Query 015891
Match_columns 398
No_of_seqs 354 out of 3210
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-38 9.1E-43 320.7 13.2 299 41-368 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.2E-32 2.1E-36 298.2 17.0 305 34-367 120-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.5E-30 8.5E-35 269.1 11.8 276 40-359 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.7E-29 3E-33 253.4 16.2 294 35-362 121-448 (591)
5 2qen_A Walker-type ATPase; unk 99.6 1.7E-14 5.6E-19 137.2 15.8 197 34-249 8-245 (350)
6 1w5s_A Origin recognition comp 99.5 4.9E-14 1.7E-18 137.1 13.1 203 36-249 20-265 (412)
7 2fna_A Conserved hypothetical 99.5 8.1E-14 2.8E-18 132.6 11.0 196 33-249 8-249 (357)
8 1njg_A DNA polymerase III subu 99.4 1.9E-12 6.6E-17 115.8 13.4 196 38-249 23-227 (250)
9 1fnn_A CDC6P, cell division co 99.4 1E-11 3.5E-16 119.7 18.1 204 35-249 14-246 (389)
10 2v1u_A Cell division control p 99.4 3.5E-12 1.2E-16 122.7 14.5 202 36-248 17-247 (387)
11 2qby_B CDC6 homolog 3, cell di 99.4 3.2E-12 1.1E-16 123.1 14.2 200 37-247 19-242 (384)
12 2qby_A CDC6 homolog 1, cell di 99.4 9E-13 3.1E-17 126.7 9.3 203 35-248 17-243 (386)
13 2chg_A Replication factor C sm 99.3 1.1E-11 3.9E-16 109.3 12.8 180 38-248 17-202 (226)
14 1sxj_B Activator 1 37 kDa subu 99.2 1E-10 3.5E-15 109.6 10.5 180 38-248 21-207 (323)
15 1iqp_A RFCS; clamp loader, ext 99.1 6.3E-10 2.2E-14 104.4 11.1 181 37-248 24-210 (327)
16 4g1u_C Hemin import ATP-bindin 99.0 6.2E-09 2.1E-13 94.9 13.5 132 62-193 36-216 (266)
17 1jr3_A DNA polymerase III subu 99.0 2.2E-09 7.4E-14 102.8 10.9 196 38-249 16-220 (373)
18 3tif_A Uncharacterized ABC tra 99.0 5.2E-09 1.8E-13 93.7 12.3 78 112-189 125-210 (235)
19 2pcj_A ABC transporter, lipopr 99.0 9.7E-09 3.3E-13 91.3 13.8 136 62-200 29-212 (224)
20 3tui_C Methionine import ATP-b 98.9 6.6E-09 2.2E-13 98.4 12.8 130 62-194 53-233 (366)
21 2olj_A Amino acid ABC transpor 98.9 1E-08 3.4E-13 93.3 13.1 132 62-193 49-227 (263)
22 2nq2_C Hypothetical ABC transp 98.9 8.8E-09 3E-13 93.3 12.5 136 63-200 31-202 (253)
23 2qi9_C Vitamin B12 import ATP- 98.9 7.2E-09 2.5E-13 93.5 11.8 127 62-192 25-200 (249)
24 2onk_A Molybdate/tungstate ABC 98.9 5.7E-09 2E-13 93.7 11.0 128 61-192 23-194 (240)
25 1vpl_A ABC transporter, ATP-bi 98.9 9E-09 3.1E-13 93.3 12.4 130 62-191 40-212 (256)
26 3gfo_A Cobalt import ATP-bindi 98.9 6.9E-09 2.4E-13 95.0 11.4 127 62-191 33-210 (275)
27 1b0u_A Histidine permease; ABC 98.9 1.3E-08 4.4E-13 92.7 12.6 82 112-193 133-221 (262)
28 1sxj_E Activator 1 40 kDa subu 98.9 7.2E-09 2.5E-13 98.5 11.0 194 38-249 14-236 (354)
29 2chq_A Replication factor C sm 98.9 4.2E-09 1.4E-13 98.4 9.2 177 38-248 17-202 (319)
30 1ji0_A ABC transporter; ATP bi 98.9 1.6E-08 5.3E-13 90.9 12.4 131 62-192 31-206 (240)
31 3fvq_A Fe(3+) IONS import ATP- 98.9 1.4E-08 4.9E-13 96.0 12.1 132 62-193 29-207 (359)
32 2pjz_A Hypothetical protein ST 98.9 1.7E-08 5.9E-13 91.8 12.2 124 63-191 30-191 (263)
33 2zu0_C Probable ATP-dependent 98.9 4.3E-08 1.5E-12 89.4 14.7 79 112-190 143-229 (267)
34 3rlf_A Maltose/maltodextrin im 98.8 1.1E-08 3.8E-13 97.4 10.9 130 62-194 28-203 (381)
35 1z47_A CYSA, putative ABC-tran 98.8 2.5E-08 8.6E-13 94.3 12.9 132 62-193 40-214 (355)
36 2it1_A 362AA long hypothetical 98.8 3.6E-08 1.2E-12 93.6 13.9 132 62-193 28-202 (362)
37 2z4s_A Chromosomal replication 98.8 2.4E-08 8.2E-13 97.9 12.9 180 38-248 105-304 (440)
38 2yz2_A Putative ABC transporte 98.8 1.7E-08 5.8E-13 92.1 11.1 127 62-191 32-204 (266)
39 1g6h_A High-affinity branched- 98.8 2.2E-08 7.6E-13 90.9 11.7 81 111-191 133-219 (257)
40 3d31_A Sulfate/molybdate ABC t 98.8 2E-08 6.7E-13 94.9 11.7 131 62-192 25-195 (348)
41 2cbz_A Multidrug resistance-as 98.8 1.9E-08 6.7E-13 90.1 11.0 133 62-200 30-201 (237)
42 3bos_A Putative DNA replicatio 98.8 6.8E-09 2.3E-13 92.7 8.0 169 38-248 28-215 (242)
43 2pze_A Cystic fibrosis transme 98.8 1.1E-07 3.6E-12 84.8 15.6 133 62-200 33-202 (229)
44 2yyz_A Sugar ABC transporter, 98.8 2.1E-08 7.2E-13 95.0 11.2 132 62-193 28-202 (359)
45 1sgw_A Putative ABC transporte 98.8 1.5E-08 5E-13 89.3 9.3 128 63-190 35-198 (214)
46 2d2e_A SUFC protein; ABC-ATPas 98.8 3.5E-08 1.2E-12 89.2 11.9 88 112-200 122-217 (250)
47 3uk6_A RUVB-like 2; hexameric 98.8 2.9E-08 1E-12 94.8 11.8 203 37-248 43-301 (368)
48 1v43_A Sugar-binding transport 98.8 7.6E-09 2.6E-13 98.6 7.4 132 62-193 36-210 (372)
49 1g29_1 MALK, maltose transport 98.8 3.8E-08 1.3E-12 93.9 12.1 132 62-193 28-208 (372)
50 3te6_A Regulatory protein SIR3 98.8 1.7E-08 5.8E-13 94.0 9.3 171 38-217 20-211 (318)
51 3pvs_A Replication-associated 98.8 1.5E-08 5.1E-13 99.3 9.1 173 38-248 26-213 (447)
52 3h4m_A Proteasome-activating n 98.8 4.9E-08 1.7E-12 89.8 12.1 184 34-248 13-229 (285)
53 1sxj_D Activator 1 41 kDa subu 98.8 4E-08 1.4E-12 93.1 11.7 190 37-248 36-233 (353)
54 1jbk_A CLPB protein; beta barr 98.7 1.7E-08 5.7E-13 86.5 7.8 46 37-86 21-66 (195)
55 1oxx_K GLCV, glucose, ABC tran 98.7 4.2E-08 1.4E-12 92.9 10.7 132 62-193 30-209 (353)
56 1hqc_A RUVB; extended AAA-ATPa 98.7 2.8E-08 9.7E-13 93.1 9.5 172 37-248 11-209 (324)
57 2ixe_A Antigen peptide transpo 98.7 9E-08 3.1E-12 87.5 12.3 69 129-200 155-229 (271)
58 2ihy_A ABC transporter, ATP-bi 98.7 2.5E-08 8.7E-13 91.5 8.5 81 111-191 141-229 (279)
59 2ff7_A Alpha-hemolysin translo 98.7 5.4E-08 1.9E-12 87.7 9.8 69 129-200 144-216 (247)
60 3bk7_A ABC transporter ATP-bin 98.7 1.1E-07 3.8E-12 96.5 12.9 136 63-200 382-545 (607)
61 1mv5_A LMRA, multidrug resista 98.7 7.1E-08 2.4E-12 86.8 10.1 133 62-200 27-210 (243)
62 3pfi_A Holliday junction ATP-d 98.7 4.9E-08 1.7E-12 92.1 9.4 172 37-248 28-225 (338)
63 1l8q_A Chromosomal replication 98.7 3.1E-07 1.1E-11 86.2 14.7 177 37-246 10-204 (324)
64 3syl_A Protein CBBX; photosynt 98.7 2.1E-07 7.1E-12 86.6 12.9 163 39-227 32-227 (309)
65 1yqt_A RNAse L inhibitor; ATP- 98.6 9E-08 3.1E-12 96.0 10.8 132 62-193 46-226 (538)
66 2bbs_A Cystic fibrosis transme 98.6 2.1E-07 7.3E-12 85.7 12.4 126 62-190 63-224 (290)
67 1yqt_A RNAse L inhibitor; ATP- 98.6 7.4E-08 2.5E-12 96.6 10.0 136 63-200 312-475 (538)
68 1d2n_A N-ethylmaleimide-sensit 98.6 7.7E-07 2.6E-11 81.3 16.1 173 37-243 32-230 (272)
69 1ye8_A Protein THEP1, hypothet 98.6 2.2E-07 7.7E-12 79.3 11.5 74 131-205 77-165 (178)
70 2qz4_A Paraplegin; AAA+, SPG7, 98.6 4.3E-07 1.5E-11 82.2 14.0 180 36-244 4-215 (262)
71 2ghi_A Transport protein; mult 98.6 1.6E-07 5.5E-12 85.3 10.9 69 129-200 154-226 (260)
72 3ozx_A RNAse L inhibitor; ATP 98.6 1.2E-07 4.2E-12 94.9 10.8 131 63-193 294-454 (538)
73 3eie_A Vacuolar protein sortin 98.6 5.1E-07 1.7E-11 84.7 14.4 176 36-244 16-221 (322)
74 3j16_B RLI1P; ribosome recycli 98.6 3.4E-07 1.2E-11 92.8 14.1 84 110-193 200-289 (608)
75 3nh6_A ATP-binding cassette SU 98.6 1.7E-07 5.9E-12 86.9 10.6 69 129-200 189-261 (306)
76 3ozx_A RNAse L inhibitor; ATP 98.6 2.7E-07 9.4E-12 92.3 12.7 83 112-194 119-206 (538)
77 1a5t_A Delta prime, HOLB; zinc 98.6 1E-06 3.5E-11 83.1 15.9 188 44-252 8-207 (334)
78 3j16_B RLI1P; ribosome recycli 98.6 2.4E-07 8.3E-12 93.9 12.0 136 64-201 379-542 (608)
79 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.1E-06 3.9E-11 82.3 15.7 178 36-245 10-217 (322)
80 3b9p_A CG5977-PA, isoform A; A 98.6 7.8E-07 2.7E-11 82.2 14.0 176 36-244 19-226 (297)
81 2iw3_A Elongation factor 3A; a 98.6 2.2E-07 7.5E-12 98.2 11.2 125 63-193 461-613 (986)
82 3u61_B DNA polymerase accessor 98.6 3.8E-07 1.3E-11 85.5 11.8 176 38-247 26-213 (324)
83 1sxj_A Activator 1 95 kDa subu 98.6 8.3E-08 2.8E-12 96.0 7.7 192 38-248 39-250 (516)
84 4gp7_A Metallophosphoesterase; 98.6 3.8E-08 1.3E-12 83.6 4.5 129 62-191 8-165 (171)
85 3bk7_A ABC transporter ATP-bin 98.6 1.6E-07 5.4E-12 95.4 9.7 131 62-192 116-295 (607)
86 3gd7_A Fusion complex of cysti 98.6 1.6E-07 5.4E-12 90.1 8.9 125 61-189 45-218 (390)
87 1sxj_C Activator 1 40 kDa subu 98.6 7E-07 2.4E-11 84.4 13.4 174 38-248 25-210 (340)
88 3cf0_A Transitional endoplasmi 98.5 1.4E-06 4.7E-11 80.9 15.1 179 36-245 13-223 (301)
89 3vfd_A Spastin; ATPase, microt 98.5 1E-06 3.6E-11 84.8 14.4 178 37-244 114-319 (389)
90 2qp9_X Vacuolar protein sortin 98.5 1.1E-06 3.6E-11 83.7 14.0 179 37-248 50-259 (355)
91 3ec2_A DNA replication protein 98.5 6.5E-07 2.2E-11 76.4 10.5 118 43-185 19-143 (180)
92 3d8b_A Fidgetin-like protein 1 98.5 7.3E-07 2.5E-11 84.9 11.7 178 37-244 83-288 (357)
93 3b5x_A Lipid A export ATP-bind 98.4 9.4E-07 3.2E-11 89.7 12.1 69 129-200 479-551 (582)
94 2zan_A Vacuolar protein sortin 98.4 3.1E-06 1.1E-10 82.9 15.0 180 36-244 132-338 (444)
95 3n70_A Transport activator; si 98.4 5.1E-07 1.8E-11 74.3 8.0 46 39-86 2-47 (145)
96 4b4t_K 26S protease regulatory 98.4 7.9E-07 2.7E-11 86.0 10.2 179 37-245 171-381 (428)
97 4b4t_J 26S protease regulatory 98.4 8.6E-07 2.9E-11 84.7 10.2 177 38-245 148-356 (405)
98 2p65_A Hypothetical protein PF 98.4 1.6E-07 5.4E-12 80.1 4.5 46 37-86 21-66 (187)
99 2iw3_A Elongation factor 3A; a 98.4 1.2E-06 4E-11 92.7 10.4 87 111-200 879-971 (986)
100 4b4t_L 26S protease subunit RP 98.4 1.6E-06 5.4E-11 84.1 10.4 178 37-245 180-389 (437)
101 3pxg_A Negative regulator of g 98.3 1.7E-06 5.8E-11 85.4 10.4 148 38-217 180-338 (468)
102 3qf4_A ABC transporter, ATP-bi 98.3 2E-06 6.9E-11 87.2 11.2 69 129-200 478-550 (587)
103 4b4t_H 26S protease regulatory 98.3 2.3E-06 7.7E-11 83.0 10.9 176 38-244 209-416 (467)
104 2yl4_A ATP-binding cassette SU 98.3 3.5E-06 1.2E-10 85.7 12.9 62 129-190 482-547 (595)
105 1lv7_A FTSH; alpha/beta domain 98.3 4.4E-06 1.5E-10 75.5 12.1 183 35-248 9-223 (257)
106 3ux8_A Excinuclease ABC, A sub 98.3 2E-06 6.8E-11 88.8 10.3 83 115-200 185-276 (670)
107 3b60_A Lipid A export ATP-bind 98.3 2.6E-06 9E-11 86.4 10.8 69 129-200 479-551 (582)
108 4b4t_M 26S protease regulatory 98.3 1.2E-06 4.2E-11 84.8 7.8 177 38-245 181-389 (434)
109 3co5_A Putative two-component 98.3 1.4E-06 4.8E-11 71.4 7.0 47 38-86 4-50 (143)
110 2w58_A DNAI, primosome compone 98.3 1.3E-06 4.3E-11 76.0 6.9 61 38-100 25-89 (202)
111 4a82_A Cystic fibrosis transme 98.3 1.5E-06 5.1E-11 88.1 8.3 69 130-201 477-549 (578)
112 3qf4_B Uncharacterized ABC tra 98.2 2.3E-06 7.8E-11 87.1 9.4 69 130-201 491-563 (598)
113 4b4t_I 26S protease regulatory 98.2 3.1E-06 1.1E-10 81.2 9.7 178 37-245 181-390 (437)
114 3cf2_A TER ATPase, transitiona 98.2 6.5E-06 2.2E-10 85.6 12.2 179 36-245 202-409 (806)
115 2ce7_A Cell division protein F 98.2 1.3E-05 4.6E-10 78.7 13.7 178 35-243 13-221 (476)
116 4fcw_A Chaperone protein CLPB; 98.2 1E-05 3.4E-10 75.1 12.3 49 38-86 17-70 (311)
117 2gno_A DNA polymerase III, gam 98.2 1.7E-05 6E-10 73.5 13.3 146 42-217 1-152 (305)
118 2kjq_A DNAA-related protein; s 98.2 8.4E-07 2.9E-11 73.4 3.9 25 62-86 35-59 (149)
119 3hu3_A Transitional endoplasmi 98.2 6.5E-06 2.2E-10 81.4 10.7 176 37-243 203-407 (489)
120 2bjv_A PSP operon transcriptio 98.2 2.4E-05 8.1E-10 70.9 13.8 47 38-86 6-52 (265)
121 3pxi_A Negative regulator of g 98.2 8.4E-06 2.9E-10 85.3 11.7 150 38-217 180-338 (758)
122 1qvr_A CLPB protein; coiled co 98.2 4.9E-06 1.7E-10 88.2 10.0 45 38-86 170-214 (854)
123 4aby_A DNA repair protein RECN 98.1 1E-05 3.5E-10 78.4 10.9 60 131-190 296-361 (415)
124 3ux8_A Excinuclease ABC, A sub 98.1 1.4E-05 4.6E-10 82.5 12.3 84 114-200 525-618 (670)
125 2r62_A Cell division protease 98.0 7.8E-07 2.7E-11 80.9 0.7 51 36-86 9-67 (268)
126 2eyu_A Twitching motility prot 98.0 1.5E-05 5.2E-10 72.2 9.0 113 62-190 24-138 (261)
127 2vf7_A UVRA2, excinuclease ABC 98.0 1.5E-05 5E-10 83.4 10.0 87 113-202 711-807 (842)
128 1in4_A RUVB, holliday junction 98.0 3.6E-05 1.2E-09 72.4 11.8 173 38-248 25-221 (334)
129 2pt7_A CAG-ALFA; ATPase, prote 98.0 2E-05 6.8E-10 74.0 9.9 107 63-189 171-279 (330)
130 1ojl_A Transcriptional regulat 98.0 5.4E-05 1.8E-09 70.2 12.5 47 38-86 2-48 (304)
131 3g5u_A MCG1178, multidrug resi 98.0 2.8E-05 9.7E-10 85.7 12.3 70 129-201 525-598 (1284)
132 4a74_A DNA repair and recombin 98.0 1.9E-05 6.4E-10 69.7 8.7 26 61-86 23-48 (231)
133 2ehv_A Hypothetical protein PH 98.0 5.6E-06 1.9E-10 74.1 5.0 25 61-85 28-52 (251)
134 1r6b_X CLPA protein; AAA+, N-t 98.0 5.5E-05 1.9E-09 79.1 13.2 45 38-86 186-230 (758)
135 2c9o_A RUVB-like 1; hexameric 98.0 7E-05 2.4E-09 73.5 13.1 50 37-86 36-86 (456)
136 3jvv_A Twitching mobility prot 97.9 3.7E-06 1.3E-10 79.7 3.6 110 63-190 123-236 (356)
137 2w0m_A SSO2452; RECA, SSPF, un 97.9 3E-05 1E-09 68.4 9.3 117 62-185 22-168 (235)
138 4f4c_A Multidrug resistance pr 97.9 1.7E-05 5.7E-10 87.7 9.0 70 129-201 1216-1289(1321)
139 2cvh_A DNA repair and recombin 97.9 3.9E-05 1.3E-09 67.1 9.7 127 49-185 8-156 (220)
140 3g5u_A MCG1178, multidrug resi 97.9 1.1E-05 3.9E-10 88.8 7.6 68 130-200 1171-1242(1284)
141 2r6f_A Excinuclease ABC subuni 97.9 5.9E-05 2E-09 79.3 12.1 87 113-202 826-922 (972)
142 3t15_A Ribulose bisphosphate c 97.9 0.00021 7.2E-09 65.8 14.4 26 61-86 34-59 (293)
143 4f4c_A Multidrug resistance pr 97.9 1.8E-05 6.2E-10 87.4 8.1 69 129-200 553-625 (1321)
144 3pxi_A Negative regulator of g 97.9 6E-05 2.1E-09 78.8 11.7 149 38-215 491-673 (758)
145 3pih_A Uvrabc system protein A 97.9 7.6E-05 2.6E-09 78.7 12.4 87 113-202 786-882 (916)
146 1n0w_A DNA repair protein RAD5 97.9 4E-05 1.4E-09 68.1 9.0 135 48-186 11-175 (243)
147 1ixz_A ATP-dependent metallopr 97.8 0.00057 1.9E-08 61.2 15.6 51 36-86 14-72 (254)
148 2ygr_A Uvrabc system protein A 97.8 8.2E-05 2.8E-09 78.5 10.9 87 113-202 844-940 (993)
149 1iy2_A ATP-dependent metallopr 97.8 0.00064 2.2E-08 61.9 15.5 53 34-86 36-96 (278)
150 2x8a_A Nuclear valosin-contain 97.8 0.00035 1.2E-08 63.6 13.4 155 37-218 9-192 (274)
151 2r44_A Uncharacterized protein 97.8 0.00015 5.1E-09 67.9 11.1 43 38-86 27-69 (331)
152 1nlf_A Regulatory protein REPA 97.7 9.5E-05 3.3E-09 67.5 9.3 123 62-188 29-184 (279)
153 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00062 2.1E-08 67.2 15.4 53 34-86 27-87 (499)
154 3b85_A Phosphate starvation-in 97.7 7.2E-06 2.5E-10 71.7 1.3 54 134-189 108-162 (208)
155 1ypw_A Transitional endoplasmi 97.7 0.0005 1.7E-08 72.2 15.1 156 35-217 201-385 (806)
156 1pzn_A RAD51, DNA repair and r 97.7 0.0001 3.4E-09 69.7 8.7 134 49-186 119-287 (349)
157 2zr9_A Protein RECA, recombina 97.7 7.1E-05 2.4E-09 70.7 7.5 103 46-158 45-149 (349)
158 1tf7_A KAIC; homohexamer, hexa 97.7 9E-05 3.1E-09 74.1 8.6 127 50-185 270-417 (525)
159 3lda_A DNA repair protein RAD5 97.7 0.00011 3.9E-09 70.5 8.6 123 61-185 176-328 (400)
160 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00063 2.2E-08 71.1 13.6 49 38-86 458-511 (758)
161 3cf2_A TER ATPase, transitiona 97.5 9.1E-05 3.1E-09 77.0 6.5 177 36-243 475-683 (806)
162 1qvr_A CLPB protein; coiled co 97.5 0.00035 1.2E-08 74.1 11.0 48 39-86 559-611 (854)
163 3hr8_A Protein RECA; alpha and 97.5 0.00019 6.5E-09 67.7 8.0 103 47-158 46-149 (356)
164 3thx_A DNA mismatch repair pro 97.5 0.00024 8.3E-09 75.2 9.7 118 62-191 661-791 (934)
165 1g8p_A Magnesium-chelatase 38 97.5 0.00015 5E-09 68.3 6.9 47 36-86 22-68 (350)
166 2vhj_A Ntpase P4, P4; non- hyd 97.5 0.00022 7.5E-09 65.9 7.5 70 62-159 122-193 (331)
167 1cr0_A DNA primase/helicase; R 97.5 0.00038 1.3E-08 64.0 9.1 26 61-86 33-58 (296)
168 1xp8_A RECA protein, recombina 97.5 0.00063 2.2E-08 64.5 10.7 105 45-158 57-162 (366)
169 3qkt_A DNA double-strand break 97.5 0.00062 2.1E-08 64.0 10.6 68 131-201 249-327 (339)
170 2ewv_A Twitching motility prot 97.4 0.00021 7E-09 68.2 7.3 112 62-190 135-249 (372)
171 2qgz_A Helicase loader, putati 97.4 0.00011 3.6E-09 68.3 5.2 48 38-86 124-175 (308)
172 1e69_A Chromosome segregation 97.4 0.00047 1.6E-08 64.3 9.6 60 130-189 219-286 (322)
173 1um8_A ATP-dependent CLP prote 97.4 0.00057 1.9E-08 65.1 10.0 49 38-86 21-95 (376)
174 3thx_B DNA mismatch repair pro 97.4 0.00015 5E-09 76.7 6.1 24 61-84 671-694 (918)
175 2o8b_B DNA mismatch repair pro 97.4 0.00042 1.4E-08 74.3 9.7 121 63-194 789-921 (1022)
176 2b8t_A Thymidine kinase; deoxy 97.4 6.7E-05 2.3E-09 66.1 3.0 113 62-185 11-126 (223)
177 2npi_A Protein CLP1; CLP1-PCF1 97.4 1.6E-05 5.3E-10 78.0 -1.5 54 131-186 236-299 (460)
178 2dr3_A UPF0273 protein PH0284; 97.3 0.00089 3.1E-08 59.3 9.8 119 61-186 21-174 (247)
179 1s96_A Guanylate kinase, GMP k 97.3 0.00059 2E-08 59.9 8.1 119 62-190 15-145 (219)
180 3m6a_A ATP-dependent protease 97.3 0.00013 4.5E-09 73.2 4.1 49 38-86 81-131 (543)
181 1ewq_A DNA mismatch repair pro 97.3 0.00075 2.6E-08 70.1 9.7 115 63-190 576-703 (765)
182 3io5_A Recombination and repai 97.2 0.00072 2.5E-08 62.3 8.0 86 65-158 30-121 (333)
183 1wb9_A DNA mismatch repair pro 97.2 0.00052 1.8E-08 71.7 7.5 25 61-85 605-629 (800)
184 1vma_A Cell division protein F 97.2 0.00091 3.1E-08 61.8 8.2 110 44-158 81-196 (306)
185 1u94_A RECA protein, recombina 97.2 0.0008 2.7E-08 63.6 7.7 104 45-158 46-151 (356)
186 2i1q_A DNA repair and recombin 97.1 0.0013 4.4E-08 61.2 9.0 109 47-159 84-215 (322)
187 2og2_A Putative signal recogni 97.1 0.001 3.6E-08 62.8 8.3 24 62-85 156-179 (359)
188 1tf7_A KAIC; homohexamer, hexa 97.1 0.00025 8.6E-09 70.8 3.9 120 62-187 38-187 (525)
189 3c8u_A Fructokinase; YP_612366 97.1 0.00044 1.5E-08 60.1 4.4 39 46-86 7-45 (208)
190 2z43_A DNA repair and recombin 97.0 0.0012 4E-08 61.7 7.2 108 48-159 94-214 (324)
191 3e70_C DPA, signal recognition 97.0 0.0029 1E-07 59.0 9.8 26 61-86 127-152 (328)
192 1rz3_A Hypothetical protein rb 97.0 0.00082 2.8E-08 58.0 5.6 43 43-86 3-45 (201)
193 2px0_A Flagellar biosynthesis 96.9 0.0099 3.4E-07 54.6 12.4 86 62-157 104-191 (296)
194 1v5w_A DMC1, meiotic recombina 96.9 0.0044 1.5E-07 58.2 10.1 108 48-159 109-230 (343)
195 1u0j_A DNA replication protein 96.8 0.0022 7.6E-08 57.6 7.3 38 47-86 90-127 (267)
196 1jr3_D DNA polymerase III, del 96.8 0.011 3.7E-07 55.3 12.5 155 62-248 17-183 (343)
197 3cmu_A Protein RECA, recombina 96.8 0.0035 1.2E-07 70.9 10.2 101 48-158 1413-1515(2050)
198 1rj9_A FTSY, signal recognitio 96.8 0.004 1.4E-07 57.4 9.0 24 62-85 101-124 (304)
199 3upu_A ATP-dependent DNA helic 96.8 0.0053 1.8E-07 60.1 10.3 39 43-86 30-68 (459)
200 1ls1_A Signal recognition part 96.8 0.003 1E-07 58.0 7.9 91 62-157 97-189 (295)
201 3tqc_A Pantothenate kinase; bi 96.8 0.0014 4.8E-08 60.9 5.6 46 41-86 70-115 (321)
202 1zp6_A Hypothetical protein AT 96.7 0.0009 3.1E-08 56.9 3.6 25 62-86 8-32 (191)
203 2orw_A Thymidine kinase; TMTK, 96.7 0.00011 3.8E-09 62.8 -2.4 37 147-185 75-113 (184)
204 3dm5_A SRP54, signal recogniti 96.7 0.011 3.7E-07 57.2 11.1 25 62-86 99-123 (443)
205 1ofh_A ATP-dependent HSL prote 96.7 0.00094 3.2E-08 61.4 3.5 49 38-86 15-73 (310)
206 3kl4_A SRP54, signal recogniti 96.6 0.0057 2E-07 59.1 8.9 25 62-86 96-120 (433)
207 3hws_A ATP-dependent CLP prote 96.6 0.0014 4.8E-08 62.1 4.5 48 39-86 16-74 (363)
208 1ypw_A Transitional endoplasmi 96.6 0.00049 1.7E-08 72.2 1.3 51 36-86 475-534 (806)
209 1zu4_A FTSY; GTPase, signal re 96.6 0.0074 2.5E-07 56.0 9.0 26 61-86 103-128 (320)
210 1kgd_A CASK, peripheral plasma 96.5 0.0011 3.8E-08 56.1 3.0 24 63-86 5-28 (180)
211 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.6E-08 56.5 3.5 24 63-86 7-30 (205)
212 3a00_A Guanylate kinase, GMP k 96.5 0.001 3.5E-08 56.6 2.6 23 64-86 2-24 (186)
213 1qhx_A CPT, protein (chloramph 96.5 0.0013 4.3E-08 55.3 2.9 23 64-86 4-26 (178)
214 1odf_A YGR205W, hypothetical 3 96.5 0.0031 1E-07 57.8 5.5 28 59-86 27-54 (290)
215 3asz_A Uridine kinase; cytidin 96.5 0.0015 5.2E-08 56.6 3.3 25 62-86 5-29 (211)
216 1htw_A HI0065; nucleotide-bind 96.5 0.0019 6.6E-08 53.5 3.8 26 61-86 31-56 (158)
217 3uie_A Adenylyl-sulfate kinase 96.4 0.0019 6.3E-08 55.6 3.7 26 61-86 23-48 (200)
218 1znw_A Guanylate kinase, GMP k 96.4 0.0017 5.7E-08 56.3 3.4 25 62-86 19-43 (207)
219 2bdt_A BH3686; alpha-beta prot 96.4 0.0018 6.2E-08 55.0 3.5 22 64-85 3-24 (189)
220 1kag_A SKI, shikimate kinase I 96.4 0.0012 4.3E-08 55.1 2.4 23 64-86 5-27 (173)
221 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0035 1.2E-07 58.8 5.5 46 41-86 2-47 (359)
222 4eun_A Thermoresistant glucoki 96.4 0.0017 5.6E-08 56.0 3.1 25 62-86 28-52 (200)
223 3lw7_A Adenylate kinase relate 96.4 0.0017 5.8E-08 54.0 3.1 20 64-83 2-21 (179)
224 1knq_A Gluconate kinase; ALFA/ 96.3 0.0024 8.1E-08 53.5 3.8 25 62-86 7-31 (175)
225 1gvn_B Zeta; postsegregational 96.3 0.0031 1.1E-07 57.7 4.8 27 60-86 30-56 (287)
226 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.2E-08 53.8 3.0 23 64-86 2-24 (173)
227 3tau_A Guanylate kinase, GMP k 96.3 0.0021 7E-08 55.8 3.4 25 62-86 7-31 (208)
228 3nbx_X ATPase RAVA; AAA+ ATPas 96.3 0.0026 8.8E-08 62.8 4.5 43 38-86 22-64 (500)
229 1lvg_A Guanylate kinase, GMP k 96.3 0.0016 5.5E-08 56.1 2.6 24 63-86 4-27 (198)
230 1j8m_F SRP54, signal recogniti 96.3 0.016 5.3E-07 53.3 9.4 91 63-158 98-190 (297)
231 1ly1_A Polynucleotide kinase; 96.3 0.0021 7.3E-08 53.8 3.3 22 64-85 3-24 (181)
232 3vaa_A Shikimate kinase, SK; s 96.3 0.0021 7.2E-08 55.3 3.1 25 62-86 24-48 (199)
233 2j41_A Guanylate kinase; GMP, 96.3 0.0023 7.8E-08 55.1 3.3 24 63-86 6-29 (207)
234 1sq5_A Pantothenate kinase; P- 96.2 0.0054 1.9E-07 56.6 5.8 26 61-86 78-103 (308)
235 2jeo_A Uridine-cytidine kinase 96.2 0.0029 9.9E-08 56.3 3.8 26 61-86 23-48 (245)
236 4a1f_A DNAB helicase, replicat 96.2 0.0076 2.6E-07 56.3 6.7 69 42-118 28-96 (338)
237 1z6g_A Guanylate kinase; struc 96.2 0.0022 7.6E-08 56.1 2.8 25 62-86 22-46 (218)
238 3aez_A Pantothenate kinase; tr 96.2 0.0032 1.1E-07 58.3 4.0 27 60-86 87-113 (312)
239 2bbw_A Adenylate kinase 4, AK4 96.1 0.0028 9.4E-08 56.5 3.4 24 63-86 27-50 (246)
240 1ex7_A Guanylate kinase; subst 96.1 0.0018 6.1E-08 55.2 2.0 23 64-86 2-24 (186)
241 2yhs_A FTSY, cell division pro 96.1 0.028 9.6E-07 55.0 10.6 26 61-86 291-316 (503)
242 3e1s_A Exodeoxyribonuclease V, 96.1 0.014 4.9E-07 58.6 8.9 24 63-86 204-227 (574)
243 3bh0_A DNAB-like replicative h 96.1 0.012 4.1E-07 54.5 7.7 68 43-118 51-118 (315)
244 1jjv_A Dephospho-COA kinase; P 96.1 0.0033 1.1E-07 54.2 3.6 22 64-85 3-24 (206)
245 2qt1_A Nicotinamide riboside k 96.1 0.0041 1.4E-07 53.7 4.2 26 61-86 19-44 (207)
246 1g5t_A COB(I)alamin adenosyltr 96.1 0.013 4.4E-07 50.1 7.1 135 62-205 27-182 (196)
247 3trf_A Shikimate kinase, SK; a 96.1 0.0029 1E-07 53.4 3.0 24 63-86 5-28 (185)
248 3t61_A Gluconokinase; PSI-biol 96.1 0.0022 7.7E-08 55.1 2.3 24 63-86 18-41 (202)
249 2yvu_A Probable adenylyl-sulfa 96.1 0.0043 1.5E-07 52.5 4.0 26 61-86 11-36 (186)
250 2rhm_A Putative kinase; P-loop 96.0 0.004 1.4E-07 52.8 3.7 25 62-86 4-28 (193)
251 3umf_A Adenylate kinase; rossm 96.0 0.028 9.6E-07 49.0 9.1 95 59-170 25-130 (217)
252 3tlx_A Adenylate kinase 2; str 96.0 0.0053 1.8E-07 54.6 4.5 41 44-86 12-52 (243)
253 1cke_A CK, MSSA, protein (cyti 96.0 0.0033 1.1E-07 55.0 3.1 24 63-86 5-28 (227)
254 2if2_A Dephospho-COA kinase; a 96.0 0.0032 1.1E-07 54.1 3.0 22 64-85 2-23 (204)
255 2qor_A Guanylate kinase; phosp 96.0 0.003 1E-07 54.5 2.6 25 62-86 11-35 (204)
256 1nks_A Adenylate kinase; therm 96.0 0.0037 1.3E-07 52.9 3.1 23 64-86 2-24 (194)
257 3ney_A 55 kDa erythrocyte memb 95.9 0.0039 1.3E-07 53.6 3.2 25 62-86 18-42 (197)
258 1uf9_A TT1252 protein; P-loop, 95.9 0.0044 1.5E-07 53.1 3.6 26 61-86 6-31 (203)
259 2gza_A Type IV secretion syste 95.9 0.029 9.8E-07 53.0 9.5 114 63-186 175-288 (361)
260 1tue_A Replication protein E1; 95.9 0.0059 2E-07 52.6 4.2 41 43-86 41-81 (212)
261 2ze6_A Isopentenyl transferase 95.9 0.0039 1.3E-07 55.9 3.3 23 64-86 2-24 (253)
262 3llm_A ATP-dependent RNA helic 95.9 0.032 1.1E-06 49.0 9.3 22 63-84 76-97 (235)
263 3lnc_A Guanylate kinase, GMP k 95.9 0.0027 9.1E-08 56.0 2.1 24 63-86 27-51 (231)
264 1y63_A LMAJ004144AAA protein; 95.9 0.0048 1.7E-07 52.2 3.6 25 62-86 9-33 (184)
265 3cmu_A Protein RECA, recombina 95.9 0.017 5.8E-07 65.5 8.8 110 40-158 361-471 (2050)
266 1kht_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 52.8 3.0 23 64-86 4-26 (192)
267 3sr0_A Adenylate kinase; phosp 95.9 0.017 5.7E-07 50.0 7.1 87 65-170 2-97 (206)
268 1tev_A UMP-CMP kinase; ploop, 95.9 0.0044 1.5E-07 52.6 3.3 24 63-86 3-26 (196)
269 1ukz_A Uridylate kinase; trans 95.9 0.0055 1.9E-07 52.6 3.9 26 61-86 13-38 (203)
270 3cm0_A Adenylate kinase; ATP-b 95.9 0.005 1.7E-07 51.9 3.5 24 63-86 4-27 (186)
271 2i3b_A HCR-ntpase, human cance 95.9 0.0038 1.3E-07 53.4 2.7 22 65-86 3-24 (189)
272 3iij_A Coilin-interacting nucl 95.8 0.0038 1.3E-07 52.5 2.6 25 62-86 10-34 (180)
273 1zuh_A Shikimate kinase; alpha 95.8 0.0046 1.6E-07 51.3 3.0 26 61-86 5-30 (168)
274 2jaq_A Deoxyguanosine kinase; 95.8 0.0046 1.6E-07 52.9 3.1 22 65-86 2-23 (205)
275 1via_A Shikimate kinase; struc 95.8 0.0044 1.5E-07 51.9 2.8 22 65-86 6-27 (175)
276 2cdn_A Adenylate kinase; phosp 95.7 0.0061 2.1E-07 52.3 3.6 26 61-86 18-43 (201)
277 1xx6_A Thymidine kinase; NESG, 95.7 0.0037 1.3E-07 53.5 2.2 110 62-185 7-118 (191)
278 2c95_A Adenylate kinase 1; tra 95.7 0.0051 1.7E-07 52.3 3.1 25 62-86 8-32 (196)
279 4e22_A Cytidylate kinase; P-lo 95.7 0.0056 1.9E-07 54.8 3.4 25 62-86 26-50 (252)
280 3cmw_A Protein RECA, recombina 95.7 0.016 5.3E-07 64.9 7.5 103 47-158 368-471 (1706)
281 2p5t_B PEZT; postsegregational 95.7 0.0065 2.2E-07 54.3 3.8 27 60-86 29-55 (253)
282 2pez_A Bifunctional 3'-phospho 95.7 0.0063 2.2E-07 51.1 3.4 25 62-86 4-28 (179)
283 3b9q_A Chloroplast SRP recepto 95.7 0.0064 2.2E-07 56.0 3.7 24 62-85 99-122 (302)
284 3k1j_A LON protease, ATP-depen 95.7 0.012 4E-07 59.8 6.0 43 38-86 41-83 (604)
285 1qf9_A UMP/CMP kinase, protein 95.7 0.0073 2.5E-07 51.1 3.8 25 62-86 5-29 (194)
286 1ny5_A Transcriptional regulat 95.7 0.2 6.8E-06 47.6 14.2 47 38-86 137-183 (387)
287 2plr_A DTMP kinase, probable t 95.6 0.0065 2.2E-07 52.3 3.4 24 63-86 4-27 (213)
288 1g41_A Heat shock protein HSLU 95.6 0.0087 3E-07 57.9 4.5 49 38-86 15-73 (444)
289 2xxa_A Signal recognition part 95.6 0.044 1.5E-06 53.0 9.4 42 45-86 77-123 (433)
290 2grj_A Dephospho-COA kinase; T 95.6 0.0078 2.7E-07 51.5 3.7 26 61-86 10-35 (192)
291 2v3c_C SRP54, signal recogniti 95.6 0.0082 2.8E-07 58.1 4.2 25 62-86 98-122 (432)
292 2bwj_A Adenylate kinase 5; pho 95.6 0.0058 2E-07 52.1 2.9 24 63-86 12-35 (199)
293 1uj2_A Uridine-cytidine kinase 95.6 0.0069 2.4E-07 54.1 3.5 26 61-86 20-45 (252)
294 1e6c_A Shikimate kinase; phosp 95.6 0.0051 1.8E-07 51.2 2.4 23 64-86 3-25 (173)
295 3sop_A Neuronal-specific septi 95.6 0.0058 2E-07 55.3 2.9 21 65-85 4-24 (270)
296 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0071 2.4E-07 54.4 3.4 24 63-86 4-27 (260)
297 2hf9_A Probable hydrogenase ni 95.6 0.013 4.3E-07 51.1 5.0 39 44-86 23-61 (226)
298 2j9r_A Thymidine kinase; TK1, 95.5 0.0097 3.3E-07 51.6 4.1 111 62-186 27-139 (214)
299 1aky_A Adenylate kinase; ATP:A 95.5 0.0067 2.3E-07 52.9 3.2 24 63-86 4-27 (220)
300 1tq4_A IIGP1, interferon-induc 95.5 0.0068 2.3E-07 58.3 3.4 24 62-85 68-91 (413)
301 2pt5_A Shikimate kinase, SK; a 95.5 0.007 2.4E-07 50.1 3.1 22 65-86 2-23 (168)
302 2iyv_A Shikimate kinase, SK; t 95.5 0.0064 2.2E-07 51.2 2.9 22 65-86 4-25 (184)
303 2f1r_A Molybdopterin-guanine d 95.5 0.0045 1.5E-07 52.0 1.8 23 64-86 3-25 (171)
304 1xjc_A MOBB protein homolog; s 95.5 0.0072 2.5E-07 50.5 3.0 25 62-86 3-27 (169)
305 2vli_A Antibiotic resistance p 95.5 0.0047 1.6E-07 51.9 1.9 24 63-86 5-28 (183)
306 2ffh_A Protein (FFH); SRP54, s 95.5 0.037 1.3E-06 53.3 8.3 25 62-86 97-121 (425)
307 1q57_A DNA primase/helicase; d 95.5 0.082 2.8E-06 52.2 11.1 50 62-116 241-291 (503)
308 2pbr_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 51.1 3.1 22 65-86 2-23 (195)
309 2wsm_A Hydrogenase expression/ 95.5 0.011 3.7E-07 51.3 4.2 41 42-86 13-53 (221)
310 2v9p_A Replication protein E1; 95.4 0.0074 2.5E-07 55.5 3.1 26 60-85 123-148 (305)
311 2wwf_A Thymidilate kinase, put 95.4 0.0077 2.6E-07 51.9 3.0 25 62-86 9-33 (212)
312 1nn5_A Similar to deoxythymidy 95.4 0.0083 2.8E-07 51.8 3.2 25 62-86 8-32 (215)
313 2v54_A DTMP kinase, thymidylat 95.4 0.0089 3E-07 51.2 3.3 24 63-86 4-27 (204)
314 2z0h_A DTMP kinase, thymidylat 95.4 0.0084 2.9E-07 50.9 3.1 22 65-86 2-23 (197)
315 3fb4_A Adenylate kinase; psych 95.4 0.0083 2.8E-07 52.0 3.1 22 65-86 2-23 (216)
316 2j37_W Signal recognition part 95.3 0.08 2.7E-06 52.1 10.4 26 61-86 99-124 (504)
317 3kta_A Chromosome segregation 95.3 0.009 3.1E-07 50.2 3.2 22 64-85 27-48 (182)
318 1m7g_A Adenylylsulfate kinase; 95.3 0.01 3.5E-07 51.3 3.6 25 62-86 24-48 (211)
319 1oix_A RAS-related protein RAB 95.3 0.011 3.7E-07 50.2 3.7 25 62-86 28-52 (191)
320 1vht_A Dephospho-COA kinase; s 95.3 0.01 3.5E-07 51.5 3.6 23 63-85 4-26 (218)
321 2vp4_A Deoxynucleoside kinase; 95.3 0.0086 3E-07 52.7 3.1 26 61-86 18-43 (230)
322 1zd8_A GTP:AMP phosphotransfer 95.3 0.0082 2.8E-07 52.6 2.9 25 62-86 6-30 (227)
323 3dl0_A Adenylate kinase; phosp 95.3 0.0092 3.2E-07 51.7 3.1 22 65-86 2-23 (216)
324 2f6r_A COA synthase, bifunctio 95.3 0.011 3.8E-07 53.7 3.8 25 61-85 73-97 (281)
325 2r8r_A Sensor protein; KDPD, P 95.2 0.01 3.5E-07 51.9 3.2 23 64-86 7-29 (228)
326 1gtv_A TMK, thymidylate kinase 95.2 0.0051 1.7E-07 53.2 1.1 22 65-86 2-23 (214)
327 1svm_A Large T antigen; AAA+ f 95.2 0.02 6.9E-07 54.3 5.3 27 60-86 166-192 (377)
328 1zak_A Adenylate kinase; ATP:A 95.2 0.0086 3E-07 52.2 2.6 24 63-86 5-28 (222)
329 2wji_A Ferrous iron transport 95.1 0.016 5.5E-07 47.7 4.0 24 63-86 3-26 (165)
330 3nwj_A ATSK2; P loop, shikimat 95.1 0.0087 3E-07 53.5 2.4 24 63-86 48-71 (250)
331 1sky_E F1-ATPase, F1-ATP synth 95.1 0.041 1.4E-06 53.5 7.2 93 64-159 152-256 (473)
332 2f9l_A RAB11B, member RAS onco 95.0 0.013 4.6E-07 49.9 3.4 24 63-86 5-28 (199)
333 2xau_A PRE-mRNA-splicing facto 95.0 0.084 2.9E-06 55.0 10.0 34 46-85 98-131 (773)
334 3p32_A Probable GTPase RV1496/ 95.0 0.025 8.6E-07 53.3 5.5 27 60-86 76-102 (355)
335 3ake_A Cytidylate kinase; CMP 95.0 0.012 4.2E-07 50.4 3.1 22 65-86 4-25 (208)
336 3cmw_A Protein RECA, recombina 95.0 0.033 1.1E-06 62.4 6.9 90 61-158 1429-1519(1706)
337 1np6_A Molybdopterin-guanine d 95.0 0.013 4.5E-07 49.2 3.0 25 62-86 5-29 (174)
338 3fwy_A Light-independent proto 95.0 0.015 5.1E-07 53.8 3.7 26 61-86 46-71 (314)
339 1fx0_B ATP synthase beta chain 94.9 0.063 2.2E-06 52.3 8.0 97 61-160 163-278 (498)
340 3be4_A Adenylate kinase; malar 94.9 0.012 3.9E-07 51.3 2.6 24 63-86 5-28 (217)
341 1lw7_A Transcriptional regulat 94.9 0.015 5.1E-07 55.0 3.6 24 63-86 170-193 (365)
342 3r20_A Cytidylate kinase; stru 94.9 0.014 4.7E-07 51.5 3.0 24 63-86 9-32 (233)
343 2wjg_A FEOB, ferrous iron tran 94.9 0.025 8.5E-07 47.4 4.6 25 62-86 6-30 (188)
344 3ice_A Transcription terminati 94.8 0.0039 1.3E-07 58.9 -0.6 26 61-86 172-197 (422)
345 2ck3_D ATP synthase subunit be 94.8 0.044 1.5E-06 53.2 6.6 97 61-160 151-265 (482)
346 1f2t_B RAD50 ABC-ATPase; DNA d 94.8 0.059 2E-06 43.8 6.6 69 130-201 57-136 (148)
347 1nij_A Hypothetical protein YJ 94.8 0.013 4.5E-07 54.3 3.0 25 62-86 3-27 (318)
348 3cr8_A Sulfate adenylyltranfer 94.8 0.018 6.2E-07 57.5 4.1 25 62-86 368-392 (552)
349 2xb4_A Adenylate kinase; ATP-b 94.8 0.015 5E-07 50.9 3.1 22 65-86 2-23 (223)
350 1e4v_A Adenylate kinase; trans 94.8 0.014 5E-07 50.5 3.0 22 65-86 2-23 (214)
351 4eaq_A DTMP kinase, thymidylat 94.8 0.029 1E-06 49.3 5.0 25 62-86 25-49 (229)
352 2yv5_A YJEQ protein; hydrolase 94.8 0.023 7.8E-07 52.3 4.3 23 63-86 165-187 (302)
353 2q6t_A DNAB replication FORK h 94.7 0.18 6.2E-06 48.9 11.0 69 46-122 186-256 (444)
354 4akg_A Glutathione S-transfera 94.7 0.15 5.2E-06 59.8 11.8 132 64-217 1268-1431(2695)
355 2qm8_A GTPase/ATPase; G protei 94.7 0.03 1E-06 52.4 5.1 26 60-85 52-77 (337)
356 2ged_A SR-beta, signal recogni 94.7 0.029 9.8E-07 47.3 4.6 26 61-86 46-71 (193)
357 2r6a_A DNAB helicase, replicat 94.7 0.11 3.6E-06 50.7 9.2 51 61-116 201-252 (454)
358 3a8t_A Adenylate isopentenyltr 94.7 0.022 7.6E-07 52.9 4.1 25 62-86 39-63 (339)
359 2zej_A Dardarin, leucine-rich 94.7 0.015 5.3E-07 48.8 2.8 22 65-86 4-25 (184)
360 1a7j_A Phosphoribulokinase; tr 94.7 0.0082 2.8E-07 54.9 1.1 25 62-86 4-28 (290)
361 1ak2_A Adenylate kinase isoenz 94.7 0.018 6.1E-07 50.6 3.3 25 62-86 15-39 (233)
362 3d3q_A TRNA delta(2)-isopenten 94.7 0.017 6E-07 53.8 3.3 23 64-86 8-30 (340)
363 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.022 7.5E-07 46.4 3.6 23 63-85 23-45 (149)
364 1ltq_A Polynucleotide kinase; 94.7 0.018 6E-07 52.7 3.3 23 64-86 3-25 (301)
365 1q3t_A Cytidylate kinase; nucl 94.6 0.019 6.4E-07 50.7 3.3 26 61-86 14-39 (236)
366 3zvl_A Bifunctional polynucleo 94.6 0.018 6E-07 55.6 3.3 26 61-86 256-281 (416)
367 1p9r_A General secretion pathw 94.6 0.031 1.1E-06 53.8 5.0 84 62-162 166-250 (418)
368 3exa_A TRNA delta(2)-isopenten 94.6 0.021 7.3E-07 52.5 3.6 24 63-86 3-26 (322)
369 2qmh_A HPR kinase/phosphorylas 94.5 0.022 7.4E-07 48.8 3.2 24 63-86 34-57 (205)
370 3crm_A TRNA delta(2)-isopenten 94.5 0.02 7E-07 52.9 3.3 24 63-86 5-28 (323)
371 2obl_A ESCN; ATPase, hydrolase 94.5 0.018 6.2E-07 54.0 3.0 26 61-86 69-94 (347)
372 3hjn_A DTMP kinase, thymidylat 94.5 0.025 8.5E-07 48.5 3.6 50 65-117 2-51 (197)
373 2dyk_A GTP-binding protein; GT 94.4 0.025 8.6E-07 45.9 3.5 23 64-86 2-24 (161)
374 2nzj_A GTP-binding protein REM 94.3 0.034 1.2E-06 45.8 4.1 25 62-86 3-27 (175)
375 1z2a_A RAS-related protein RAB 94.3 0.03 1E-06 45.6 3.7 25 62-86 4-28 (168)
376 3pih_A Uvrabc system protein A 94.3 0.11 3.9E-06 54.7 8.8 86 114-202 446-540 (916)
377 3dzd_A Transcriptional regulat 94.3 0.059 2E-06 50.9 6.1 47 38-86 129-175 (368)
378 3foz_A TRNA delta(2)-isopenten 94.2 0.029 9.9E-07 51.5 3.7 25 62-86 9-33 (316)
379 1pui_A ENGB, probable GTP-bind 94.2 0.015 5.2E-07 49.8 1.7 26 61-86 24-49 (210)
380 3euj_A Chromosome partition pr 94.2 0.025 8.5E-07 55.3 3.4 22 64-85 30-51 (483)
381 2lkc_A Translation initiation 94.2 0.036 1.2E-06 45.8 3.9 26 61-86 6-31 (178)
382 2ce2_X GTPase HRAS; signaling 94.1 0.025 8.5E-07 45.9 2.8 22 65-86 5-26 (166)
383 1g8f_A Sulfate adenylyltransfe 94.1 0.034 1.2E-06 54.9 4.2 46 39-86 373-418 (511)
384 3vr4_D V-type sodium ATPase su 94.1 0.025 8.7E-07 54.5 3.2 98 62-160 150-260 (465)
385 2gj8_A MNME, tRNA modification 94.1 0.033 1.1E-06 46.2 3.6 24 63-86 4-27 (172)
386 2hxs_A RAB-26, RAS-related pro 94.1 0.042 1.4E-06 45.4 4.2 26 61-86 4-29 (178)
387 1svi_A GTP-binding protein YSX 94.1 0.035 1.2E-06 46.7 3.8 26 61-86 21-46 (195)
388 2qag_B Septin-6, protein NEDD5 94.1 0.022 7.5E-07 54.8 2.7 25 62-86 41-65 (427)
389 1yrb_A ATP(GTP)binding protein 94.1 0.037 1.3E-06 49.2 4.1 26 61-86 12-37 (262)
390 2qnr_A Septin-2, protein NEDD5 94.0 0.023 7.7E-07 52.3 2.6 23 64-86 19-41 (301)
391 3vkw_A Replicase large subunit 94.0 0.35 1.2E-05 46.6 10.9 27 59-85 157-183 (446)
392 1z08_A RAS-related protein RAB 94.0 0.035 1.2E-06 45.5 3.5 26 61-86 4-29 (170)
393 4edh_A DTMP kinase, thymidylat 93.9 0.07 2.4E-06 46.3 5.4 24 63-86 6-29 (213)
394 1u0l_A Probable GTPase ENGC; p 93.9 0.043 1.5E-06 50.4 4.3 24 63-86 169-192 (301)
395 2rcn_A Probable GTPase ENGC; Y 93.9 0.032 1.1E-06 52.5 3.3 23 64-86 216-238 (358)
396 2www_A Methylmalonic aciduria 93.9 0.038 1.3E-06 51.9 3.8 26 61-86 72-97 (349)
397 3end_A Light-independent proto 93.9 0.036 1.2E-06 50.8 3.7 37 50-86 28-64 (307)
398 1u8z_A RAS-related protein RAL 93.8 0.046 1.6E-06 44.4 4.0 24 63-86 4-27 (168)
399 2r9v_A ATP synthase subunit al 93.8 0.079 2.7E-06 51.7 6.0 95 61-160 173-279 (515)
400 1kao_A RAP2A; GTP-binding prot 93.8 0.033 1.1E-06 45.2 2.9 23 64-86 4-26 (167)
401 2p67_A LAO/AO transport system 93.8 0.057 2E-06 50.4 4.9 27 60-86 53-79 (341)
402 1nrj_B SR-beta, signal recogni 93.8 0.038 1.3E-06 47.6 3.4 26 61-86 10-35 (218)
403 3pqc_A Probable GTP-binding pr 93.8 0.042 1.4E-06 46.1 3.6 25 62-86 22-46 (195)
404 3con_A GTPase NRAS; structural 93.8 0.033 1.1E-06 46.7 3.0 24 63-86 21-44 (190)
405 1c1y_A RAS-related protein RAP 93.8 0.035 1.2E-06 45.2 3.0 23 64-86 4-26 (167)
406 1ek0_A Protein (GTP-binding pr 93.8 0.034 1.2E-06 45.4 3.0 23 64-86 4-26 (170)
407 1fzq_A ADP-ribosylation factor 93.8 0.04 1.4E-06 46.1 3.5 26 61-86 14-39 (181)
408 1w36_D RECD, exodeoxyribonucle 93.8 0.11 3.8E-06 52.5 7.3 23 63-85 164-186 (608)
409 3q72_A GTP-binding protein RAD 93.7 0.03 1E-06 45.7 2.6 22 65-86 4-25 (166)
410 1ega_A Protein (GTP-binding pr 93.7 0.038 1.3E-06 50.7 3.6 26 61-86 6-31 (301)
411 2fn4_A P23, RAS-related protei 93.7 0.05 1.7E-06 44.9 4.0 26 61-86 7-32 (181)
412 1ky3_A GTP-binding protein YPT 93.7 0.044 1.5E-06 45.3 3.6 26 61-86 6-31 (182)
413 2ocp_A DGK, deoxyguanosine kin 93.7 0.037 1.3E-06 48.8 3.3 24 63-86 2-25 (241)
414 1fx0_A ATP synthase alpha chai 93.7 0.1 3.5E-06 51.0 6.5 95 61-160 161-267 (507)
415 2erx_A GTP-binding protein DI- 93.6 0.053 1.8E-06 44.3 4.0 23 64-86 4-26 (172)
416 3q85_A GTP-binding protein REM 93.6 0.054 1.9E-06 44.2 4.0 23 64-86 3-25 (169)
417 2dpy_A FLII, flagellum-specifi 93.6 0.032 1.1E-06 54.0 3.0 27 60-86 154-180 (438)
418 1h65_A Chloroplast outer envel 93.6 0.089 3E-06 47.3 5.7 26 61-86 37-62 (270)
419 1z0j_A RAB-22, RAS-related pro 93.6 0.042 1.5E-06 44.8 3.3 25 62-86 5-29 (170)
420 3def_A T7I23.11 protein; chlor 93.6 0.091 3.1E-06 47.0 5.7 26 61-86 34-59 (262)
421 2cxx_A Probable GTP-binding pr 93.6 0.039 1.3E-06 46.1 3.1 22 65-86 3-24 (190)
422 3lxx_A GTPase IMAP family memb 93.5 0.051 1.7E-06 47.8 3.9 26 61-86 27-52 (239)
423 2ygr_A Uvrabc system protein A 93.5 0.15 5.2E-06 53.9 8.1 84 116-202 505-597 (993)
424 1g16_A RAS-related protein SEC 93.5 0.049 1.7E-06 44.4 3.6 24 63-86 3-26 (170)
425 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.045 1.5E-06 45.1 3.3 25 62-86 6-30 (177)
426 1m7b_A RND3/RHOE small GTP-bin 93.5 0.048 1.7E-06 45.6 3.5 26 61-86 5-30 (184)
427 3l0o_A Transcription terminati 93.5 0.3 1E-05 46.1 9.1 35 49-86 164-198 (427)
428 3tw8_B RAS-related protein RAB 93.5 0.046 1.6E-06 45.2 3.4 26 61-86 7-32 (181)
429 3ihw_A Centg3; RAS, centaurin, 93.5 0.04 1.4E-06 46.3 2.9 25 62-86 19-43 (184)
430 4gzl_A RAS-related C3 botulinu 93.5 0.045 1.5E-06 46.8 3.3 40 43-86 14-53 (204)
431 1z0f_A RAB14, member RAS oncog 93.4 0.053 1.8E-06 44.7 3.7 26 61-86 13-38 (179)
432 2r6f_A Excinuclease ABC subuni 93.4 0.14 4.8E-06 54.0 7.6 84 115-201 487-579 (972)
433 4bas_A ADP-ribosylation factor 93.4 0.048 1.7E-06 46.0 3.5 27 60-86 14-40 (199)
434 1r2q_A RAS-related protein RAB 93.4 0.042 1.4E-06 44.8 3.0 24 63-86 6-29 (170)
435 2fz4_A DNA repair protein RAD2 93.4 0.32 1.1E-05 42.7 9.0 38 42-86 94-131 (237)
436 1f6b_A SAR1; gtpases, N-termin 93.4 0.043 1.5E-06 46.7 3.2 25 62-86 24-48 (198)
437 3kkq_A RAS-related protein M-R 93.4 0.063 2.1E-06 44.6 4.1 26 61-86 16-41 (183)
438 1upt_A ARL1, ADP-ribosylation 93.4 0.055 1.9E-06 44.3 3.7 25 62-86 6-30 (171)
439 3bc1_A RAS-related protein RAB 93.4 0.057 1.9E-06 45.1 3.8 26 61-86 9-34 (195)
440 3e2i_A Thymidine kinase; Zn-bi 93.4 0.044 1.5E-06 47.4 3.1 106 62-182 27-135 (219)
441 3iev_A GTP-binding protein ERA 93.4 0.053 1.8E-06 49.9 3.9 28 59-86 6-33 (308)
442 2vf7_A UVRA2, excinuclease ABC 93.3 0.2 6.7E-06 52.5 8.5 84 115-201 362-454 (842)
443 3qks_A DNA double-strand break 93.3 0.053 1.8E-06 46.6 3.6 23 63-85 23-45 (203)
444 1m2o_B GTP-binding protein SAR 93.3 0.041 1.4E-06 46.4 2.8 24 63-86 23-46 (190)
445 3cph_A RAS-related protein SEC 93.3 0.053 1.8E-06 46.3 3.5 25 62-86 19-43 (213)
446 1r8s_A ADP-ribosylation factor 93.2 0.045 1.5E-06 44.5 2.9 22 65-86 2-23 (164)
447 1mky_A Probable GTP-binding pr 93.2 0.1 3.6E-06 50.5 5.9 46 41-86 151-203 (439)
448 3tqf_A HPR(Ser) kinase; transf 93.2 0.054 1.8E-06 45.2 3.3 24 63-86 16-39 (181)
449 3qf7_A RAD50; ABC-ATPase, ATPa 93.2 0.19 6.5E-06 47.4 7.5 68 130-200 279-357 (365)
450 3f9v_A Minichromosome maintena 93.2 0.027 9.3E-07 56.9 1.7 47 38-86 295-350 (595)
451 3k53_A Ferrous iron transport 93.2 0.056 1.9E-06 48.6 3.7 24 63-86 3-26 (271)
452 3qf7_A RAD50; ABC-ATPase, ATPa 93.2 0.053 1.8E-06 51.2 3.6 21 64-84 24-44 (365)
453 3gqb_B V-type ATP synthase bet 93.2 0.051 1.8E-06 52.4 3.5 97 61-159 145-262 (464)
454 2qag_C Septin-7; cell cycle, c 93.2 0.04 1.4E-06 53.0 2.8 22 65-86 33-54 (418)
455 2qe7_A ATP synthase subunit al 93.2 0.16 5.6E-06 49.5 7.0 95 61-160 160-266 (502)
456 2o5v_A DNA replication and rep 93.1 0.054 1.9E-06 51.0 3.6 22 64-85 27-48 (359)
457 3t5g_A GTP-binding protein RHE 93.1 0.051 1.7E-06 45.1 3.1 25 62-86 5-29 (181)
458 2y8e_A RAB-protein 6, GH09086P 93.1 0.046 1.6E-06 45.0 2.8 23 64-86 15-37 (179)
459 1t9h_A YLOQ, probable GTPase E 93.1 0.025 8.5E-07 52.1 1.2 24 63-86 173-196 (307)
460 3cbq_A GTP-binding protein REM 93.1 0.051 1.7E-06 46.1 3.1 25 61-85 21-45 (195)
461 3gmt_A Adenylate kinase; ssgci 93.1 0.047 1.6E-06 47.9 2.8 25 62-86 7-31 (230)
462 2oil_A CATX-8, RAS-related pro 93.1 0.067 2.3E-06 44.9 3.8 26 61-86 23-48 (193)
463 2qu8_A Putative nucleolar GTP- 93.1 0.064 2.2E-06 46.7 3.8 26 61-86 27-52 (228)
464 2efe_B Small GTP-binding prote 93.0 0.061 2.1E-06 44.5 3.5 25 62-86 11-35 (181)
465 2a9k_A RAS-related protein RAL 93.0 0.065 2.2E-06 44.5 3.7 25 62-86 17-41 (187)
466 3eph_A TRNA isopentenyltransfe 93.0 0.052 1.8E-06 51.7 3.3 23 64-86 3-25 (409)
467 2bov_A RAla, RAS-related prote 93.0 0.072 2.5E-06 45.1 4.0 25 62-86 13-37 (206)
468 3c5c_A RAS-like protein 12; GD 93.0 0.065 2.2E-06 45.0 3.6 26 61-86 19-44 (187)
469 3clv_A RAB5 protein, putative; 93.0 0.073 2.5E-06 44.8 4.0 25 62-86 6-30 (208)
470 3bwd_D RAC-like GTP-binding pr 93.0 0.052 1.8E-06 45.0 3.0 25 62-86 7-31 (182)
471 2h92_A Cytidylate kinase; ross 93.0 0.043 1.5E-06 47.4 2.5 23 64-86 4-26 (219)
472 2iwr_A Centaurin gamma 1; ANK 93.0 0.039 1.3E-06 45.7 2.2 25 62-86 6-30 (178)
473 1zbd_A Rabphilin-3A; G protein 93.0 0.058 2E-06 45.8 3.3 25 62-86 7-31 (203)
474 2bme_A RAB4A, RAS-related prot 93.0 0.069 2.4E-06 44.4 3.7 26 61-86 8-33 (186)
475 1vg8_A RAS-related protein RAB 93.0 0.066 2.3E-06 45.5 3.6 26 61-86 6-31 (207)
476 4dsu_A GTPase KRAS, isoform 2B 93.0 0.062 2.1E-06 44.7 3.4 24 63-86 4-27 (189)
477 3ld9_A DTMP kinase, thymidylat 93.0 0.1 3.6E-06 45.5 4.9 26 61-86 19-44 (223)
478 3t1o_A Gliding protein MGLA; G 92.9 0.053 1.8E-06 45.5 3.0 25 62-86 13-37 (198)
479 1p5z_B DCK, deoxycytidine kina 92.9 0.037 1.3E-06 49.6 2.0 25 62-86 23-47 (263)
480 3b1v_A Ferrous iron uptake tra 92.9 0.091 3.1E-06 47.4 4.7 24 63-86 3-26 (272)
481 2oap_1 GSPE-2, type II secreti 92.9 0.046 1.6E-06 54.1 2.9 94 64-169 261-354 (511)
482 3bgw_A DNAB-like replicative h 92.9 0.12 4.2E-06 50.1 5.8 65 45-117 182-246 (444)
483 2atv_A RERG, RAS-like estrogen 92.9 0.054 1.8E-06 45.8 2.9 25 62-86 27-51 (196)
484 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.074 2.5E-06 44.1 3.7 24 63-86 5-28 (186)
485 2fh5_B SR-beta, signal recogni 92.8 0.058 2E-06 46.2 3.1 25 62-86 6-30 (214)
486 2fg5_A RAB-22B, RAS-related pr 92.8 0.054 1.8E-06 45.7 2.9 26 61-86 21-46 (192)
487 1ksh_A ARF-like protein 2; sma 92.8 0.071 2.4E-06 44.5 3.6 27 61-87 16-42 (186)
488 3oaa_A ATP synthase subunit al 92.8 0.31 1E-05 47.5 8.3 96 61-160 160-266 (513)
489 1moz_A ARL1, ADP-ribosylation 92.8 0.047 1.6E-06 45.4 2.4 26 61-86 16-41 (183)
490 3lv8_A DTMP kinase, thymidylat 92.8 0.1 3.5E-06 46.0 4.7 24 63-86 27-50 (236)
491 2axn_A 6-phosphofructo-2-kinas 92.8 0.062 2.1E-06 53.3 3.6 25 62-86 34-58 (520)
492 3tkl_A RAS-related protein RAB 92.8 0.079 2.7E-06 44.5 3.8 26 61-86 14-39 (196)
493 2g6b_A RAS-related protein RAB 92.7 0.082 2.8E-06 43.6 3.8 25 62-86 9-33 (180)
494 1zj6_A ADP-ribosylation factor 92.7 0.087 3E-06 44.0 4.0 26 61-86 14-39 (187)
495 1gwn_A RHO-related GTP-binding 92.7 0.056 1.9E-06 46.3 2.8 25 62-86 27-51 (205)
496 1zd9_A ADP-ribosylation factor 92.7 0.06 2E-06 45.2 3.0 25 62-86 21-45 (188)
497 2cjw_A GTP-binding protein GEM 92.7 0.062 2.1E-06 45.4 3.1 24 62-85 5-28 (192)
498 2gks_A Bifunctional SAT/APS ki 92.7 0.09 3.1E-06 52.4 4.6 46 39-86 350-395 (546)
499 2gf9_A RAS-related protein RAB 92.7 0.082 2.8E-06 44.3 3.8 25 62-86 21-45 (189)
500 2q3h_A RAS homolog gene family 92.7 0.065 2.2E-06 45.4 3.1 25 62-86 19-43 (201)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-38 Score=320.71 Aligned_cols=299 Identities=14% Similarity=0.089 Sum_probs=211.2
Q ss_pred ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc--CCCCCccccceEEEEecCCcc--cHHHHHHHHH
Q 015891 41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH--KPDVKTQFVPRIWVCTMSGQK--TAESIVKRIL 116 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~~v~~v~~~~--~~~~~~~~il 116 (398)
|||++++++|.++|... .....++|+|+||||+||||||+++|+ +.++..+|+.++|++ +++.. +...++..++
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCCCCHHHHHHHHH
Confidence 59999999999999762 244689999999999999999999997 556889999999998 98875 7889999999
Q ss_pred HHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 117 KRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK-RYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 117 ~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
.+++.... .....+..+...+...+...|.++ ++||||||||+.+++ .+. ..+||+||||||+..++..+..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----ccCCCEEEEEcCCHHHHHHcCC
Confidence 99986532 112222234566778899999996 999999999998755 222 2379999999999999887633
Q ss_pred CCceEEcCCCCChhHHHHHHHhh-hCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCCchhHHh
Q 015891 194 EENLHQLQPLSDQESCWLIYRDS-VRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGENTKLMER 272 (398)
Q Consensus 194 ~~~~~~l~~L~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~~~~~~~ 272 (398)
....|+|++|+. +++|.||.+. ++... ++...+.+++|+++|+|+||||+. +|+.+..+ .|+.
T Consensus 284 ~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~----------~g~~l~~~--~w~~ 347 (549)
T 2a5y_B 284 TCEFIEVTSLEI-DECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMM----------FFKSCEPK--TFEK 347 (549)
T ss_dssp CEEEEECCCCCH-HHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHH----------HHTTCCSS--SHHH
T ss_pred CCeEEECCCCCH-HHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHH----------HHHHhccc--hHHH
Confidence 456899999999 6788888884 44321 356677899999999999999877 56666433 3433
Q ss_pred HHHHHhhhc-cCCCCCCcchhhhhhHHHHHHHHH-hh-hcc---------------hHhhhHHHHHHHHHh--CCchH--
Q 015891 273 KRSILRDSA-NLPNSKQLEEEVEKLQGQITKMIE-EK-RAK---------------QREQRKNAEELKRKC--GGLPL-- 330 (398)
Q Consensus 273 w~~~L~~~~-~lp~~~~~~~~~~~l~~sy~~l~~-e~-cf~---------------~~~~~~~~~~il~~~--g~~~~-- 330 (398)
+ ..+.... ..+...+.. .++.||+.|+. .+ ||. +..+...-..+|... |+.+.
T Consensus 348 ~-~~l~~~l~~~~~~~i~~----~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~ 422 (549)
T 2a5y_B 348 M-AQLNNKLESRGLVGVEC----ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNE 422 (549)
T ss_dssp H-HHHHHHHHHHCSSTTCC----CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC------
T ss_pred H-HHhHHHhhcccHHHHHH----HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCC
Confidence 2 3333221 223333444 77778887766 33 652 222211113344444 44321
Q ss_pred ----------HHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHHHhhcCC
Q 015891 331 ----------AAKLLGEIKAQEELRR----KEKLLKDILDEIERVVAANRRP 368 (398)
Q Consensus 331 ----------~~~~l~~~~~~~~i~~----~~~~mHdll~dm~~~i~~~e~~ 368 (398)
.+..|.++ +++.... ..+.||||+||+|+++++++..
T Consensus 423 ~~~~~~~~~~~l~~L~~r-sLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 423 EEQLDDEVADRLKRLSKR-GALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -CCCTHHHHHHHHHTTTB-SSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCCHHHHHHHHHHHHHc-CCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 25566666 6666521 3589999999999998876643
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=6.2e-32 Score=298.19 Aligned_cols=305 Identities=16% Similarity=0.116 Sum_probs=215.2
Q ss_pred CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Cccccc-eEEEEecCCcc--cHH
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFVP-RIWVCTMSGQK--TAE 109 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~-~~~v~~v~~~~--~~~ 109 (398)
+.+++.||||++++++|.++|.. .++..++|+|+||||+||||||++++++.+. ..+|.. ++|+. +++.. ...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~--~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~ 196 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWK--LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDKSGLL 196 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHT--TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhh--ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCchHHH
Confidence 34457799999999999999976 4567899999999999999999999987322 344554 56888 88743 344
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHH
Q 015891 110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKL 187 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v 187 (398)
..+..++..++........ .....+.+...++..+.++ ++||||||+|+...++. ..+||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~------~~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQR-LPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA------FDNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSS-CCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT------TCSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccC-CCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh------hcCCCEEEEEcCCHHH
Confidence 5567777777654432211 1356677788888888877 99999999999865442 3679999999999998
Q ss_pred HHHhcCCCceEEcCC-CCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcCC
Q 015891 188 TTEMVGEENLHQLQP-LSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGEN 266 (398)
Q Consensus 188 ~~~~~~~~~~~~l~~-L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~~ 266 (398)
+..+.+....+++.+ |+. ++++.||....+... +...+.+++|+++|+|+||||.. +|+++..+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~-~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~----------~~~~l~~~ 334 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGR-EKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSL----------IGALLRDF 334 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCH-HHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHH----------HHHHHHHS
T ss_pred HHhhcCCceEEEecCCCCH-HHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHH----------HHHHhhcC
Confidence 865546678899996 988 668888887543322 22334788999999999999776 66766543
Q ss_pred chhHHhHHHHHhhhccCCCCCC-------cchhhhhhHHHHHHHHH-hh-hcc----hH----hhhHHHHHHHHHhCCch
Q 015891 267 TKLMERKRSILRDSANLPNSKQ-------LEEEVEKLQGQITKMIE-EK-RAK----QR----EQRKNAEELKRKCGGLP 329 (398)
Q Consensus 267 ~~~~~~w~~~L~~~~~lp~~~~-------~~~~~~~l~~sy~~l~~-e~-cf~----~~----~~~~~~~~il~~~g~~~ 329 (398)
. ..|...++.+.+.+...+ .+.....++.||+.|.. ++ ||. +. ...+.+..++...+...
T Consensus 335 ~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~ 411 (1249)
T 3sfz_A 335 P---NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEV 411 (1249)
T ss_dssp S---SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHH
T ss_pred h---hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHH
Confidence 3 457777777764332221 13466789999999988 44 442 21 23334444442211111
Q ss_pred H-HHHHHhhhhhhhhhh-HHH---HHHHHHHHHHHHHHHhhcC
Q 015891 330 L-AAKLLGEIKAQEELR-RKE---KLLKDILDEIERVVAANRR 367 (398)
Q Consensus 330 ~-~~~~l~~~~~~~~i~-~~~---~~mHdll~dm~~~i~~~e~ 367 (398)
. .+..|.++ +++... ++. +.||||+|+++++.+.++.
T Consensus 412 ~~~l~~L~~~-sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 412 EDILQEFVNK-SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHT-TSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHhc-cceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 2 57777888 888763 333 8999999999999877653
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=2.5e-30 Score=269.09 Aligned_cols=276 Identities=11% Similarity=0.102 Sum_probs=192.4
Q ss_pred cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHHHH
Q 015891 40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRILKR 118 (398)
Q Consensus 40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il~~ 118 (398)
.|||++++++|.++|.. . +..++|+|+||||+||||||++++++.++..+|+. ++|++ +++..+...++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~--~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE--L-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH--C-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc--c-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCCCCHHHHHHHHHHH
Confidence 49999999999999975 2 34789999999999999999999987557888997 88998 99888877777777665
Q ss_pred cCCCC---CCCCCc--C-CCchHHHHHHHHHHH---hCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891 119 LGVDD---GTTNSF--E-GQGLAFLDYVLQQQL---IGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT 189 (398)
Q Consensus 119 l~~~~---~~~~~~--~-~~~~~~~~~~l~~~l---~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~ 189 (398)
++... ...... . ....+.....++..+ .++++||||||+|+.+.++.+. +||+||||||++.++.
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH------SSCCEEEECSCSHHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC------CCeEEEEeccChHHHH
Confidence 32211 000000 0 123344556666665 5799999999999987776542 6899999999999886
Q ss_pred HhcCCCceEEcC------CCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhh
Q 015891 190 EMVGEENLHQLQ------PLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQ 263 (398)
Q Consensus 190 ~~~~~~~~~~l~------~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l 263 (398)
.+. ....|+++ +|+. ++++.||.+.++..... ...+| |+|+||||.. +|+.+
T Consensus 280 ~l~-g~~vy~LeL~d~dL~LS~-eEA~eLF~~~~g~~~ee-------L~~eI---CgGLPLALkL----------aGs~L 337 (1221)
T 1vt4_I 280 FLS-AATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQD-------LPREV---LTTNPRRLSI----------IAESI 337 (1221)
T ss_dssp HHH-HHSSCEEEECSSSSCCCH-HHHHHHHHHHHCCCTTT-------HHHHH---CCCCHHHHHH----------HHHHH
T ss_pred hcC-CCeEEEecCccccCCcCH-HHHHHHHHHHcCCCHHH-------HHHHH---hCCCHHHHHH----------HHHHH
Confidence 542 22356666 8998 77999999887543211 33333 8899999666 66666
Q ss_pred cCCchhHHhHHHHHhhhccCCCCCCcchhhhhhHHHHHHHHH-h-h-hcc----hHh----hhHHHHHHHHHhCCc-hH-
Q 015891 264 GENTKLMERKRSILRDSANLPNSKQLEEEVEKLQGQITKMIE-E-K-RAK----QRE----QRKNAEELKRKCGGL-PL- 330 (398)
Q Consensus 264 ~~~~~~~~~w~~~L~~~~~lp~~~~~~~~~~~l~~sy~~l~~-e-~-cf~----~~~----~~~~~~~il~~~g~~-~~- 330 (398)
..+...+++|+.. . .......++.||+.|.. + + ||. +.. ..+.+..++...|.. ..
T Consensus 338 r~k~~s~eeW~~~-------~----~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~ 406 (1221)
T 1vt4_I 338 RDGLATWDNWKHV-------N----CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406 (1221)
T ss_dssp HHSCSSHHHHHHC-------S----CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHH
T ss_pred hCCCCCHHHHhcC-------C----hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHH
Confidence 5443367788763 1 24556699999999988 6 6 442 222 233444444433321 22
Q ss_pred HHHHHhhhhhhhhhh--HHHHHHHHHHHHHH
Q 015891 331 AAKLLGEIKAQEELR--RKEKLLKDILDEIE 359 (398)
Q Consensus 331 ~~~~l~~~~~~~~i~--~~~~~mHdll~dm~ 359 (398)
.+..|.++ +++... ...+.||||+++++
T Consensus 407 ~L~eLvdR-SLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKY-SLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTS-SSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhh-CCEEEeCCCCEEEehHHHHHHh
Confidence 67788888 888773 35689999998865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=253.37 Aligned_cols=294 Identities=17% Similarity=0.112 Sum_probs=197.1
Q ss_pred CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccccc-ceEEEEecCCccc--HHH
Q 015891 35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFV-PRIWVCTMSGQKT--AES 110 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~~v~~v~~~~~--~~~ 110 (398)
.+++.||||+.+++.|.++|.. ..+..++|+|+||||+||||||..++++... ...|. .++|++ ++.... ...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~~~~~ 197 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSK--LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKSGLLM 197 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTT--STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhc--ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchHHHHH
Confidence 3457899999999999999975 3456899999999999999999999987333 67785 688988 765422 223
Q ss_pred HHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH
Q 015891 111 IVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT 188 (398)
Q Consensus 111 ~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~ 188 (398)
.+..++..++...... .......+.....+...+.+ +++||||||+|+...++. ..++++||||||+..++
T Consensus 198 ~l~~l~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~------l~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA------FDSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT------TCSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH------hcCCCeEEEECCCcHHH
Confidence 3344455555321110 11124566677778888876 789999999999765432 25689999999999877
Q ss_pred HHhcCCCceEEc---CCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCChHHHHHHhhhhcC
Q 015891 189 TEMVGEENLHQL---QPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSSKQLVEELGKLQGE 265 (398)
Q Consensus 189 ~~~~~~~~~~~l---~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~lpl~~~lg~~l~~ 265 (398)
..+. ...+++ ++|+. ++++.||.+..+... ....+.+.+|+++|+|+|+||.. +|..+..
T Consensus 271 ~~~~--~~~~~v~~l~~L~~-~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~----------~a~~l~~ 333 (591)
T 1z6t_A 271 DSVM--GPKYVVPVESSLGK-EKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSL----------IGALLRD 333 (591)
T ss_dssp TTCC--SCEEEEECCSSCCH-HHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHH----------HHHHHHH
T ss_pred HhcC--CCceEeecCCCCCH-HHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHH----------HHHHHhc
Confidence 6542 345555 58998 668888887655321 12234788999999999999776 5565543
Q ss_pred CchhHHhHHHHHhhhccCCCCC-------CcchhhhhhHHHHHHHHH-hh-hc------chH--hhhHHHHHHHHHhCCc
Q 015891 266 NTKLMERKRSILRDSANLPNSK-------QLEEEVEKLQGQITKMIE-EK-RA------KQR--EQRKNAEELKRKCGGL 328 (398)
Q Consensus 266 ~~~~~~~w~~~L~~~~~lp~~~-------~~~~~~~~l~~sy~~l~~-e~-cf------~~~--~~~~~~~~il~~~g~~ 328 (398)
.. ..|...++.+.+.+... ........++.||+.|+. ++ || ..+ .....+..++ +..
T Consensus 334 ~~---~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~---~~~ 407 (591)
T 1z6t_A 334 FP---NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW---DME 407 (591)
T ss_dssp ST---TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHH---TCC
T ss_pred Cc---hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHh---ccC
Confidence 32 35777777666332221 123455688999999988 44 33 222 2222233332 222
Q ss_pred h---H-HHHHHhhhhhhhhhhH----HHHHHHHHHHHHHHHH
Q 015891 329 P---L-AAKLLGEIKAQEELRR----KEKLLKDILDEIERVV 362 (398)
Q Consensus 329 ~---~-~~~~l~~~~~~~~i~~----~~~~mHdll~dm~~~i 362 (398)
+ . .+..|.++ +++.... ..+.||||+|+++++.
T Consensus 408 ~~~~~~~l~~L~~~-~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 408 TEEVEDILQEFVNK-SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHHHT-TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 1 1 56777777 7776522 2578999999998876
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=1.7e-14 Score=137.16 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=128.1
Q ss_pred CCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc------c
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK------T 107 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~------~ 107 (398)
...++.|+||+.+++.|.+++.. . +.+.|+|++|+|||||++.+++. .. .+|+. +.... +
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----~--~~v~i~G~~G~GKT~Ll~~~~~~--~~-----~~~~~-~~~~~~~~~~~~ 73 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----Y--PLTLLLGIRRVGKSSLLRAFLNE--RP-----GILID-CRELYAERGHIT 73 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----C--SEEEEECCTTSSHHHHHHHHHHH--SS-----EEEEE-HHHHHHTTTCBC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----C--CeEEEECCCcCCHHHHHHHHHHH--cC-----cEEEE-eecccccccCCC
Confidence 34557899999999999999864 1 79999999999999999999886 21 56666 44322 4
Q ss_pred HHHHHHHHHHHcCCC--------------CCCCCCcCCCchHHHHHHHHHHHhC-CCcEEEecCCCC---------HHHH
Q 015891 108 AESIVKRILKRLGVD--------------DGTTNSFEGQGLAFLDYVLQQQLIG-KRYLIVLDDFED---------MEVC 163 (398)
Q Consensus 108 ~~~~~~~il~~l~~~--------------~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVLDdv~~---------~~~~ 163 (398)
...++..+...+... .... .............+...... ++.+|||||++. .+.+
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTL-EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTS-CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceee-ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455556565554320 0000 00113344455555555543 499999999985 2445
Q ss_pred HHHHhHcCCCCCCEEEEEeCChHHHHHh----------cCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHH
Q 015891 164 KHLSKVLPRGYGERLIITSRNEKLTTEM----------VGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDL 232 (398)
Q Consensus 164 ~~l~~~l~~~~gs~IIiTTR~~~v~~~~----------~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 232 (398)
..+.......++.++|+|++...+...+ .+. ...+++.||+. ++...++.+.+...+.... .+.+
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~-~e~~~~l~~~~~~~~~~~~---~~~~ 228 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDK-DTSVEFLKRGFREVNLDVP---ENEI 228 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCH-HHHHHHHHHHHHTTTCCCC---HHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCH-HHHHHHHHHHHHHcCCCCC---HHHH
Confidence 5555444333578899999876543321 111 34789999999 6677788776543322222 2367
Q ss_pred HHHHHhcCCCchhhhcc
Q 015891 233 EEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 233 ~~I~~~c~GlPlai~~~ 249 (398)
..|++.|+|+|+++..+
T Consensus 229 ~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVF 245 (350)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHH
Confidence 78999999999987664
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=4.9e-14 Score=137.15 Aligned_cols=203 Identities=17% Similarity=0.178 Sum_probs=128.7
Q ss_pred CCCCcccchhhHHHHHHHH-hccCCC--CCeeEEEE--EcCCCChHHHHHHHHHcCCCCCcc-----cc-ceEEEEecCC
Q 015891 36 PPANVHGFANEELHLQKLL-SNRGTD--DQFRAIGV--VGVAGVGKTTLCQRIFHKPDVKTQ-----FV-PRIWVCTMSG 104 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L-~~~~~~--~~~~~v~I--~G~~GiGKTtLa~~v~~~~~~~~~-----F~-~~~~v~~v~~ 104 (398)
.|+.|+||+.+++.|..++ ...... .....+.| +|++|+|||||++.+++. .... +. ..+|+. +..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVN-AFN 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEE-GGG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEE-CCC
Confidence 4478999999999999998 531112 24556777 999999999999999876 3321 12 246666 556
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCH--------HHHHHHHhHcCC--
Q 015891 105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM--------EVCKHLSKVLPR-- 172 (398)
Q Consensus 105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~--------~~~~~l~~~l~~-- 172 (398)
..+...++..++..++...... ..........+...+. +++++|||||++.. +.+..+...+..
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~ 172 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVR----GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP 172 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCT----TCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCC----CCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc
Confidence 6678888999999987653211 1223444555666654 67899999999853 333333333321
Q ss_pred --C--CCCEEEEEeCChHHHHHhc--------CCCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHh
Q 015891 173 --G--YGERLIITSRNEKLTTEMV--------GEENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEK 238 (398)
Q Consensus 173 --~--~gs~IIiTTR~~~v~~~~~--------~~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~ 238 (398)
+ .+..+|+||++..+...+. .....+.++|++. ++.+.++.+.+.. .....+ .+....|++.
T Consensus 173 ~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~-~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~ 248 (412)
T 1w5s_A 173 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS-RELYTILEQRAELGLRDTVWE---PRHLELISDV 248 (412)
T ss_dssp CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHH
T ss_pred cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH-HHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHH
Confidence 2 3445788887665432211 1123499999999 6688888653221 111111 2366778888
Q ss_pred cC------CCchhhhcc
Q 015891 239 LQ------GQNEDAVNF 249 (398)
Q Consensus 239 c~------GlPlai~~~ 249 (398)
|+ |.|..+..+
T Consensus 249 ~~~~~~~~G~p~~~~~l 265 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVA 265 (412)
T ss_dssp HCGGGTSCCCHHHHHHH
T ss_pred HHHhccCCCcHHHHHHH
Confidence 88 999876654
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.49 E-value=8.1e-14 Score=132.62 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCCCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-----cc
Q 015891 33 KSKPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-----KT 107 (398)
Q Consensus 33 ~~~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-----~~ 107 (398)
+...++.|+||+.+++.|.+ +. . +++.|+|++|+|||||++.+++. ... ..+|+. +... .+
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~----~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~-~~~~~~~~~~~ 73 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LR----A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLD-LRKFEERNYIS 73 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TC----S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEE-GGGGTTCSCCC
T ss_pred CCCCHHHhcChHHHHHHHHH-hc----C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEE-chhhccccCCC
Confidence 33456789999999999999 63 2 69999999999999999999886 222 246776 5432 23
Q ss_pred HHHHHHHHHHHcC------------------CCCCCCC-Cc-----CCCchHHHHHHHHHHHhCCCcEEEecCCCCH---
Q 015891 108 AESIVKRILKRLG------------------VDDGTTN-SF-----EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--- 160 (398)
Q Consensus 108 ~~~~~~~il~~l~------------------~~~~~~~-~~-----~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--- 160 (398)
....+..+...+. ...+... .. ...........+.+... ++.+|||||++..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 3333333332220 0000000 00 01223333333332211 4899999999752
Q ss_pred ---HHHHHHHhHcCCCCCCEEEEEeCChHHHHHh----------cCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchH
Q 015891 161 ---EVCKHLSKVLPRGYGERLIITSRNEKLTTEM----------VGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKS 226 (398)
Q Consensus 161 ---~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~----------~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~ 226 (398)
++...+........+.++|+|++.......+ .+. ...+++.||+. +++..++.+.++..+.....
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~ 231 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSR-EEAIEFLRRGFQEADIDFKD 231 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCH-HHHHHHHHHHHHHHTCCCCC
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCH-HHHHHHHHHHHHHcCCCCCc
Confidence 3334444333323478899999987643321 112 35789999999 66788887755321111111
Q ss_pred HHHHHHHHHHHhcCCCchhhhcc
Q 015891 227 QARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 227 ~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
...|++.|+|+|+.+..+
T Consensus 232 -----~~~i~~~t~G~P~~l~~~ 249 (357)
T 2fna_A 232 -----YEVVYEKIGGIPGWLTYF 249 (357)
T ss_dssp -----HHHHHHHHCSCHHHHHHH
T ss_pred -----HHHHHHHhCCCHHHHHHH
Confidence 278899999999987664
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.41 E-value=1.9e-12 Score=115.81 Aligned_cols=196 Identities=15% Similarity=0.120 Sum_probs=110.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.+++||+..++.|..++... .....+.|+|++|+||||||+.+++. ....+....+ . ....... ..+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~---~~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~-~-~~~~~~~----~~~~~ 91 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG---RIHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITAT-P-CGVCDNC----REIEQ 91 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT---CCCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSS-C-CSCSHHH----HHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCC-C-CcccHHH----HHHhc
Confidence 56999999999999999751 22358899999999999999999875 2111110000 0 0000000 00000
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCChH-HH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNEK-LT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~ 188 (398)
..................... .+...+ ..++.+||+||++ +....+.+...+. ...+..+|+||+... +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000000000000001111111 111111 2457899999998 4555566665554 345778888887653 22
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
..+......++++|++. ++...++.+.+.......++ +....|++.|+|.|..+..+
T Consensus 171 ~~l~~r~~~i~l~~l~~-~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~~~~~~~ 227 (250)
T 1njg_A 171 VTILSRCLQFHLKALDV-EQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSL 227 (250)
T ss_dssp HHHHTTSEEEECCCCCH-HHHHHHHHHHHHHTTCCBCH---HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhccCCCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 22223456899999998 66888888755433322222 35678999999999987663
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=1e-11 Score=119.69 Aligned_cols=204 Identities=15% Similarity=0.216 Sum_probs=132.0
Q ss_pred CCCCCcccchhhHHHHHHHHhcc--CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCcccHHHH
Q 015891 35 KPPANVHGFANEELHLQKLLSNR--GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~~~~~ 111 (398)
..|+.++||+.+++.+..++... ......+.+.|+|++|+|||||++.+++. ..... ...+++. .....+...+
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~-~~~~~~~~~~ 90 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYIN-GFIYRNFTAI 90 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEE-TTTCCSHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEe-CccCCCHHHH
Confidence 34478999999999999988752 11222348999999999999999999876 32221 2345665 6666777888
Q ss_pred HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCC--HHHHHHHHhHcCC--C---CCCEEEEEe
Q 015891 112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFED--MEVCKHLSKVLPR--G---YGERLIITS 182 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~--~~~~~~l~~~l~~--~---~gs~IIiTT 182 (398)
+..++..++..... ...........+...+. +++.+|||||++. ......|...+.. . .+..||+||
T Consensus 91 ~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 91 IGEIARSLNIPFPR----RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHHTTCCCCS----SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHHHHHhCccCCC----CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 88999888754321 11234444555555554 4678999999984 5656666555532 1 467888888
Q ss_pred CChHHHHHhcC------CCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhc---------CCCchh
Q 015891 183 RNEKLTTEMVG------EENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKL---------QGQNED 245 (398)
Q Consensus 183 R~~~v~~~~~~------~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c---------~GlPla 245 (398)
++..+...+.. ....+.++|++. ++...++.+.+.. .....+ .+..+.|++.+ .|.|..
T Consensus 167 ~~~~~~~~l~~~~~~r~~~~~i~~~pl~~-~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 167 HNDAVLNNLDPSTRGIMGKYVIRFSPYTK-DQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp SSTHHHHTSCHHHHHHHTTCEEECCCCBH-HHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred CCchHHHHhCHHhhhcCCCceEEeCCCCH-HHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 87654332210 124799999998 6677777664321 111222 23666777888 688766
Q ss_pred hhcc
Q 015891 246 AVNF 249 (398)
Q Consensus 246 i~~~ 249 (398)
+..+
T Consensus 243 ~~~~ 246 (389)
T 1fnn_A 243 AIDI 246 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=3.5e-12 Score=122.72 Aligned_cols=202 Identities=16% Similarity=0.178 Sum_probs=128.1
Q ss_pred CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc------ccceEEEEecCCcccHH
Q 015891 36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ------FVPRIWVCTMSGQKTAE 109 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~~v~~v~~~~~~~ 109 (398)
.|+.|+||+.+++.+..++...........+.|+|++|+||||||+.+++. .... -...+|+. .....+..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~-~~~~~~~~ 93 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVN-ARHRETPY 93 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEE-TTTSCSHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEE-CCcCCCHH
Confidence 447899999999999999865222456778999999999999999999876 3221 12245666 66677788
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHh--CCCcEEEecCCCCHH----HHHHHHhHcC---C---CCCCE
Q 015891 110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI--GKRYLIVLDDFEDME----VCKHLSKVLP---R---GYGER 177 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~~----~~~~l~~~l~---~---~~gs~ 177 (398)
.++..++..++..... ...........+...+. +++.+|||||++... ..+.+...+. . ..+..
T Consensus 94 ~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~ 169 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPF----TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVS 169 (387)
T ss_dssp HHHHHHHHHHSCCCCS----SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CE
T ss_pred HHHHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEE
Confidence 8889999998764321 11234444555666663 357899999999542 3344443332 1 44667
Q ss_pred EEEEeCChHHH----HHhcCC--CceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhh
Q 015891 178 LIITSRNEKLT----TEMVGE--ENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDA 246 (398)
Q Consensus 178 IIiTTR~~~v~----~~~~~~--~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai 246 (398)
+|+||+...+. ..+... ...+.++|++. ++...++.+.+.. .....++ +..+.+++.++ |.|..+
T Consensus 170 ~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~ 245 (387)
T 2v1u_A 170 LVGITNSLGFVENLEPRVKSSLGEVELVFPPYTA-PQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRA 245 (387)
T ss_dssp EEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCH-HHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHH
T ss_pred EEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCH-HHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHH
Confidence 88888765221 111111 24789999998 6677777764321 1112222 24566677776 888654
Q ss_pred hc
Q 015891 247 VN 248 (398)
Q Consensus 247 ~~ 248 (398)
..
T Consensus 246 ~~ 247 (387)
T 2v1u_A 246 LD 247 (387)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=3.2e-12 Score=123.11 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=126.3
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc--------ccceEEEEecCCcc-c
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ--------FVPRIWVCTMSGQK-T 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~--------F~~~~~v~~v~~~~-~ 107 (398)
|+.|+||+.+++.+..++.........+.+.|+|++|+||||||+.+++. .... ....+|+. ..... +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~-~~~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVN-CREVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEE-HHHHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEE-CccCCCC
Confidence 47899999999999988865223345678999999999999999999876 3211 22345665 55545 6
Q ss_pred HHHHHHHHHHHc-CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHH---HHH-HHhHcCCCCCCEEEEEe
Q 015891 108 AESIVKRILKRL-GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEV---CKH-LSKVLPRGYGERLIITS 182 (398)
Q Consensus 108 ~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~---~~~-l~~~l~~~~gs~IIiTT 182 (398)
...++..++..+ +..... ...........+...+..++.+|||||++.... .+. +...+....+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPK----HGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCS----SSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEE
Confidence 777788888877 332211 112334455667777776666999999985432 223 33333322678899999
Q ss_pred CChHH----HHHh-cCCCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhhh
Q 015891 183 RNEKL----TTEM-VGEENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDAV 247 (398)
Q Consensus 183 R~~~v----~~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai~ 247 (398)
+...+ ...+ ......+.++|++. ++...++.+.+.. .....++ +..+.|++.|+ |.|..+.
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDA-EQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCH-HHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCH-HHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHH
Confidence 87531 1111 11134899999988 6678888764321 1112222 24556677776 8776543
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=9e-13 Score=126.73 Aligned_cols=203 Identities=17% Similarity=0.219 Sum_probs=125.9
Q ss_pred CCCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc---cceEEEEecCCcccHHHH
Q 015891 35 KPPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF---VPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~~v~~v~~~~~~~~~ 111 (398)
..|+.|+||+.+++.+..++...........+.|+|++|+|||||++.+++. ....+ ...+|+. .........+
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~-~~~~~~~~~~ 93 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYIN-TRQIDTPYRV 93 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEE-HHHHCSHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEE-CCCCCCHHHH
Confidence 3457899999999999998875212455678999999999999999999886 33332 2345665 5555566677
Q ss_pred HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhC--CCcEEEecCCCCH------HHHHHHHhHcC--CCCCCEEEEE
Q 015891 112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIG--KRYLIVLDDFEDM------EVCKHLSKVLP--RGYGERLIIT 181 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVLDdv~~~------~~~~~l~~~l~--~~~gs~IIiT 181 (398)
+..++..++..... ...........+...+.. ++.+|||||++.. +.+..+...+. ...+..+|+|
T Consensus 94 ~~~i~~~l~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 94 LADLLESLDVKVPF----TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHHHTTTTSCCCCS----SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHHHhCCCCCC----CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 77777777654321 112344445556566643 4899999999853 23333333332 2335677888
Q ss_pred eCChHHHHHhc-----C-CCceEEcCCCCChhHHHHHHHhhhCC--CCCcchHHHHHHHHHHHHhcC---CCchhhhc
Q 015891 182 SRNEKLTTEMV-----G-EENLHQLQPLSDQESCWLIYRDSVRD--KDAQLKSQARKDLEEKLEKLQ---GQNEDAVN 248 (398)
Q Consensus 182 TR~~~v~~~~~-----~-~~~~~~l~~L~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~~~I~~~c~---GlPlai~~ 248 (398)
|++..+...+. . ....+.++|++. ++...++.+.+.. ......+ +..+.+++.++ |.|..+..
T Consensus 170 ~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~-~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 170 TNDVKFVDLLDPRVKSSLSEEEIIFPPYNA-EELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp ESCGGGGGGCTTHHHHTTTTEEEEECCCCH-HHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHH
T ss_pred ECCCChHhhhCHHHhccCCCeeEEeCCCCH-HHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHH
Confidence 88764322211 1 125899999998 6678887764321 1112222 24555666666 88886554
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.33 E-value=1.1e-11 Score=109.27 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=109.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccc-eEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVP-RIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~-~~~v~~v~~~~~~~~~~~~i 115 (398)
.+++||+..++.+..++.. .....+.|+|++|+|||+||+.+++. .... +.. .+.+. .+...........+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMN-ASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEE-TTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEec-cccccChHHHHHHH
Confidence 5799999999999999975 23334999999999999999999875 2222 221 22233 32222222221111
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHHh
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTEM 191 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~~ 191 (398)
........ ....++.+||+||++. ....+.+...+. ...++++|+||+... +...+
T Consensus 90 ~~~~~~~~--------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 90 KEFARTAP--------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp HHHHTSCC--------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHhcccC--------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence 11111000 0024678999999984 455555555554 345678888887653 22222
Q ss_pred cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 192 VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 192 ~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
......+++.+++. ++...++.+.+...+...++ +..+.|++.++|.|..+..
T Consensus 150 ~~r~~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 150 QSRCAVFRFKPVPK-EAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp HTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred HHhCceeecCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 23345899999998 66777777654322222222 3567788899999987554
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1e-10 Score=109.65 Aligned_cols=180 Identities=17% Similarity=0.299 Sum_probs=108.4
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~~~~~~~~~~i 115 (398)
++++|++..++.+..++.. +....+.|+|++|+||||+|+.+++. .... +. ..+++. .+...... .+..+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELN-ASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEEC-TTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEec-CccccChH-HHHHH
Confidence 5799999999999999965 23333999999999999999999876 3221 21 123333 22221211 11112
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTE 190 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~ 190 (398)
+..+.... ..+ .+++.++|+||++. ....+.|...+. ...++++|+||+... +...
T Consensus 93 ~~~~~~~~-------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 93 IKHFAQKK-------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHHHHBC-------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHhcc-------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 21110000 001 24578999999984 444444554543 335678888887643 2223
Q ss_pred hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+......+++.+++. ++...++.+.+...+...++ +....|++.|+|.|..+..
T Consensus 154 l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 154 LQSQCAILRYSKLSD-EDVLKRLLQIIKLEDVKYTN---DGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp HHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred HHhhceEEeecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 334456899999998 66777777644322222222 3567888999999976544
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=6.3e-10 Score=104.39 Aligned_cols=181 Identities=15% Similarity=0.217 Sum_probs=108.2
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCcccHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~~~~~~~~~~ 114 (398)
.++++|++..++.+..++.. +....+.|+|++|+||||+|+.+++. +... +. ..+.+. .+..... ..+..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~-~~~~~ 95 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELN-ASDERGI-NVIRE 95 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEE-TTCHHHH-HTTHH
T ss_pred HHHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEee-ccccCch-HHHHH
Confidence 35699999999999999975 23345999999999999999999876 3221 11 122222 2211111 11111
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHH
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTE 190 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~ 190 (398)
.+..+.... .....++.++|+||++. .+..+.|...+. ...++++|+||.... +...
T Consensus 96 ~~~~~~~~~-------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 96 KVKEFARTK-------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp HHHHHHHSC-------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHhhC-------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHH
Confidence 111100000 00114678999999984 455555655554 345678888887643 2122
Q ss_pred hcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 191 MVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 191 ~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+......+.+.|++. ++...++.+.+...+...++ +....|++.++|.|..+..
T Consensus 157 l~sr~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 157 IQSRCAIFRFRPLRD-EDIAKRLRYIAENEGLELTE---EGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp HHHTEEEEECCCCCH-HHHHHHHHHHHHTTTCEECH---HHHHHHHHHHTTCHHHHHH
T ss_pred HHhhCcEEEecCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHCCCCHHHHHH
Confidence 222234789999997 66777777655443333333 3567788889998887554
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.97 E-value=6.2e-09 Score=94.94 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=85.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc--------------ceEEEEecC-------------------Cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV--------------PRIWVCTMS-------------------GQ 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~--------------~~~~v~~v~-------------------~~ 105 (398)
.-.+++|+|++|+|||||++.+..-..-. . .|+ .+.++..-. ..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 115 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG 115 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCc
Confidence 45689999999999999999996531100 0 000 011211000 00
Q ss_pred ccHHHHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhC------CCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 106 KTAESIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIG------KRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~------k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
........+++..+++..... .....+++++++..+++.|.. ++-+|+||++. |......+...+. .
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 122345667888888765432 334589999999999999998 99999999999 4443333333332 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..+..||++||+.+.+..+++
T Consensus 196 ~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 196 QEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HSSEEEEEECSCHHHHHHHCS
T ss_pred cCCCEEEEEEcCHHHHHHhCC
Confidence 235689999999988776543
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.97 E-value=2.2e-09 Score=102.75 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=107.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|++..++.+...+.. ......+.|+|++|+||||+|+.+++.......+... . ...... ...+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~---~-~~~~~~----~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT---P-CGVCDN----CREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSS---C-CSSSHH----HHHHHT
T ss_pred hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC---C-CcccHH----HHHHhc
Confidence 5699999999999999965 1224578999999999999999998752111111000 0 000000 011110
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNEK-LT 188 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~ 188 (398)
.-...............+.... +...+ .+++.++|+||++ +....+.+...+.. ..+..+|++|.+.. +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHH-HHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred cCCCceEEecccccCCHHHHHH-HHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 0000000000000011111122 22222 2356899999998 44555566555542 34566777776442 22
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhcc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNF 249 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~ 249 (398)
..+......+++.+++. ++...++.+.+...+...++ +....|++.++|.|..+..+
T Consensus 164 ~~l~sr~~~i~~~~l~~-~~~~~~l~~~~~~~~~~~~~---~a~~~l~~~~~G~~r~~~~~ 220 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDV-EQIRHQLEHILNEEHIAHEP---RALQLLARAAEGSLRDALSL 220 (373)
T ss_dssp HHHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCBCH---HHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHhheeEeeCCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHCCCCHHHHHHH
Confidence 23334457899999998 66777777654322222222 25677888999999877654
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.96 E-value=5.2e-09 Score=93.73 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR 183 (398)
..+++..+++... .......+++++++..+++.+..++-+|+||++. |......+...+. ...|..||++||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4456777777542 3344568999999999999999999999999999 4444444444432 223789999999
Q ss_pred ChHHHH
Q 015891 184 NEKLTT 189 (398)
Q Consensus 184 ~~~v~~ 189 (398)
+.+++.
T Consensus 205 d~~~~~ 210 (235)
T 3tif_A 205 DINVAR 210 (235)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998763
No 19
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.95 E-value=9.7e-09 Score=91.29 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=85.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cc------------------cceEEEEec---CCccc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QF------------------VPRIWVCTM---SGQKT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F------------------~~~~~v~~v---~~~~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .| ..+.++..- ....+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 108 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPML 108 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHH
Confidence 34689999999999999999996531100 0 00 012222100 00001
Q ss_pred --------HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CC
Q 015891 108 --------AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RG 173 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~ 173 (398)
......++++.+++.... ......+.+++++..+++.+..++-+++||++. |....+.+...+. ..
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 188 (224)
T 2pcj_A 109 KMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188 (224)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 112345677888876532 334458999999999999999999999999999 4444444443332 12
Q ss_pred CCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 174 YGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.|..||++||+.+.+ .+ .++++.+
T Consensus 189 ~g~tvi~vtHd~~~~-~~--~d~v~~l 212 (224)
T 2pcj_A 189 GGTSIVMVTHERELA-EL--THRTLEM 212 (224)
T ss_dssp TTCEEEEECSCHHHH-TT--SSEEEEE
T ss_pred CCCEEEEEcCCHHHH-Hh--CCEEEEE
Confidence 378999999998876 33 2444444
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.94 E-value=6.6e-09 Score=98.39 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=86.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc-----------------ceEEEEecCCcc---------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV-----------------PRIWVCTMSGQK--------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~-----------------~~~~v~~v~~~~--------------- 106 (398)
.-.+++|+|++|+|||||++.+..-..-.. .|+ .+.++ .+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v---~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMI---FQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEE---CSSCCCCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEE---eCCCccCCCCCHHHHHHHH
Confidence 456899999999999999999965311100 000 11121 1110
Q ss_pred ---------cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 107 ---------TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 107 ---------~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
...+...++++.+++... .......+++++++..++++|..++-+|++|++. |......+...+.
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 112335667888887653 3334558999999999999999999999999999 4433333333332
Q ss_pred -CCCCCEEEEEeCChHHHHHhcCC
Q 015891 172 -RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
...|.+||++||+.+++..+++.
T Consensus 210 ~~~~g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 210 NRRLGLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp HHHSCCEEEEEESCHHHHHHHCSE
T ss_pred HHhCCCEEEEEecCHHHHHHhCCE
Confidence 23488999999999888776443
No 21
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.93 E-value=1e-08 Score=93.31 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=84.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc----------------ceEEEEecC---CcccH-----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV----------------PRIWVCTMS---GQKTA----------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~----------------~~~~v~~v~---~~~~~----------- 108 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+ .+.++..-. ...+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~ 128 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV 128 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999996531100 0 000 112221000 00011
Q ss_pred --------HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCC
Q 015891 109 --------ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGY 174 (398)
Q Consensus 109 --------~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~ 174 (398)
.....++++.+++... .......+++++++..+++.+..++-+|+||++. |....+.+...+. ...
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 208 (263)
T 2olj_A 129 RKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 1234566777777543 2334458999999999999999999999999999 4444443333332 123
Q ss_pred CCEEEEEeCChHHHHHhcC
Q 015891 175 GERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~ 193 (398)
|..||++||+.+.+..+++
T Consensus 209 g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 209 GMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp TCEEEEECSCHHHHHHHCS
T ss_pred CCEEEEEcCCHHHHHHhCC
Confidence 7899999999887776533
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.92 E-value=8.8e-09 Score=93.26 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=87.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCC-ccc---cceEEEEe---------cC------C----------cccHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQF---VPRIWVCT---------MS------G----------QKTAESIVK 113 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~~v~~---------v~------~----------~~~~~~~~~ 113 (398)
-.+++|+|++|+|||||++.++.-..-. ... ..+.++.. +. . .........
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 4589999999999999999997652110 000 01111110 00 0 001123456
Q ss_pred HHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChH
Q 015891 114 RILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEK 186 (398)
Q Consensus 114 ~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~ 186 (398)
.+++.+++... .......+++++++..+++.+..++-+++||++. |....+.+...+. ...|..||++||+.+
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 77888887643 2334458999999999999999999999999999 4444444443332 223789999999988
Q ss_pred HHHHhcCCCceEEc
Q 015891 187 LTTEMVGEENLHQL 200 (398)
Q Consensus 187 v~~~~~~~~~~~~l 200 (398)
.+..++ ++++.+
T Consensus 191 ~~~~~~--d~v~~l 202 (253)
T 2nq2_C 191 QVVAIA--NKTLLL 202 (253)
T ss_dssp HHHHHC--SEEEEE
T ss_pred HHHHhC--CEEEEE
Confidence 776543 334444
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.92 E-value=7.2e-09 Score=93.52 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=84.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE-----------------EEecCCc------ccH----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW-----------------VCTMSGQ------KTA---------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~-----------------v~~v~~~------~~~---------- 108 (398)
.-.+++|+|++|+|||||++.++.- .... +.++ +.++.+. .+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl--~~p~--G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM--TSGK--GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS--SCCE--EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC--CCCC--eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 3458999999999999999999765 2111 1111 1111111 011
Q ss_pred ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCc-------EEEecCCC---CHHHHHHHHhHcC--C
Q 015891 109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRY-------LIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~-------LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
......+++.+++... .......+++++++..+.+.+..++- +++||++. |....+.+...+. .
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 3345677888887643 22334589999999999999999888 99999999 4444444444332 1
Q ss_pred CCCCEEEEEeCChHHHHHhc
Q 015891 173 GYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~ 192 (398)
..|..||++||+.+.+..++
T Consensus 181 ~~g~tviivtHd~~~~~~~~ 200 (249)
T 2qi9_C 181 QQGLAIVMSSHDLNHTLRHA 200 (249)
T ss_dssp HTTCEEEEECSCHHHHHHHC
T ss_pred hCCCEEEEEeCCHHHHHHhC
Confidence 23789999999988776543
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.92 E-value=5.7e-09 Score=93.69 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=84.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE---------------EEecCCc-------------------c
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW---------------VCTMSGQ-------------------K 106 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~---------------v~~v~~~-------------------~ 106 (398)
.. .+++|+|++|+|||||++.+..-... ..+.++ +.++.+. .
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~ 98 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV 98 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc
Confidence 45 78999999999999999999653110 000010 0001110 0
Q ss_pred c---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCC
Q 015891 107 T---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGE 176 (398)
Q Consensus 107 ~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs 176 (398)
. ..+...++++.+++... .......+++++++..+++.+..++-+++||++. |....+.+...+. ...|.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 99 ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0 12345667888887653 2334458999999999999999999999999999 5544444444432 12377
Q ss_pred EEEEEeCChHHHHHhc
Q 015891 177 RLIITSRNEKLTTEMV 192 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~ 192 (398)
.||++||+.+.+..++
T Consensus 179 tvi~vtHd~~~~~~~~ 194 (240)
T 2onk_A 179 PILHVTHDLIEAAMLA 194 (240)
T ss_dssp CEEEEESCHHHHHHHC
T ss_pred EEEEEeCCHHHHHHhC
Confidence 8999999987766543
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.92 E-value=9e-09 Score=93.27 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=83.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-------------ceEEEEecC---CcccH--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-------------PRIWVCTMS---GQKTA-------------- 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-------------~~~~v~~v~---~~~~~-------------- 108 (398)
.-.+++|+|++|+|||||++.++.-.... . .|. .+.++..-. ...+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 119 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 45689999999999999999996541110 0 000 112221000 00011
Q ss_pred ----HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE
Q 015891 109 ----ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL 178 (398)
Q Consensus 109 ----~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I 178 (398)
.....++++.+++... .......+.+++++..+++.+..++-+++||++. |......+...+. ...|..|
T Consensus 120 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ti 199 (256)
T 1vpl_A 120 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199 (256)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEE
Confidence 1234566777777543 2233458999999999999999999999999999 4444333333332 1247899
Q ss_pred EEEeCChHHHHHh
Q 015891 179 IITSRNEKLTTEM 191 (398)
Q Consensus 179 IiTTR~~~v~~~~ 191 (398)
|++||+.+.+..+
T Consensus 200 iivtHd~~~~~~~ 212 (256)
T 1vpl_A 200 LVSSHNMLEVEFL 212 (256)
T ss_dssp EEEECCHHHHTTT
T ss_pred EEEcCCHHHHHHH
Confidence 9999998877664
No 26
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.91 E-value=6.9e-09 Score=94.98 Aligned_cols=127 Identities=19% Similarity=0.153 Sum_probs=83.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc----------------ceEEEEecCCcc-------c--------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV----------------PRIWVCTMSGQK-------T-------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~----------------~~~~v~~v~~~~-------~-------- 107 (398)
.-.+++|+|++|+|||||++.+..-.... . .|+ .+.++ .+.. +
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v---~Q~~~~~~~~~tv~e~l~~~ 109 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIV---FQDPDNQLFSASVYQDVSFG 109 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEE---CSSGGGTCCSSBHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEE---EcCcccccccCcHHHHHHHH
Confidence 34689999999999999999996531100 0 000 11122 1110 1
Q ss_pred ----------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--
Q 015891 108 ----------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-- 171 (398)
Q Consensus 108 ----------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-- 171 (398)
..+...++++.+++... .......+++++++..+++.|..++-+|+||++. |......+...+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 110 AVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 12335567778887653 2334458999999999999999999999999999 4443333333332
Q ss_pred C-CCCCEEEEEeCChHHHHHh
Q 015891 172 R-GYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 172 ~-~~gs~IIiTTR~~~v~~~~ 191 (398)
. ..|.+||++||+.+.+..+
T Consensus 190 ~~~~g~tvi~vtHdl~~~~~~ 210 (275)
T 3gfo_A 190 QKELGITIIIATHDIDIVPLY 210 (275)
T ss_dssp HHHHCCEEEEEESCCSSGGGG
T ss_pred HhhCCCEEEEEecCHHHHHHh
Confidence 1 2388999999998777654
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.89 E-value=1.3e-08 Score=92.69 Aligned_cols=82 Identities=11% Similarity=0.238 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 112 VKRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 112 ~~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..++++.+++... .......+++++++..+++.+..++-+|+||++. |....+.+...+. ...|..||++||+
T Consensus 133 ~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4567777887653 3344558999999999999999999999999999 4443333333332 1237889999999
Q ss_pred hHHHHHhcC
Q 015891 185 EKLTTEMVG 193 (398)
Q Consensus 185 ~~v~~~~~~ 193 (398)
.+.+..+++
T Consensus 213 ~~~~~~~~d 221 (262)
T 1b0u_A 213 MGFARHVSS 221 (262)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCC
Confidence 887766533
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=7.2e-09 Score=98.50 Aligned_cols=194 Identities=16% Similarity=0.211 Sum_probs=103.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC---CCCCc-cccc------------------
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK---PDVKT-QFVP------------------ 95 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~---~~~~~-~F~~------------------ 95 (398)
++++|.+..++.+..++.. ...... +.|+|++|+||||+++.+++. +.... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~--~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQ--PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTC--TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred HHhcCCHHHHHHHHHHHhh--CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 5689999999988888722 222233 899999999999999998763 10000 0000
Q ss_pred --eEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHc
Q 015891 96 --RIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVL 170 (398)
Q Consensus 96 --~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l 170 (398)
.+.+. .+.. .......++++..+....... ... .+ ..+..++.++||||++. ....+.+...+
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 91 PYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQVD---------FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp SSEEEEC-CC----CCHHHHHHHHHHHTTTTC-----------------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred cceEEec-HhhcCCcchHHHHHHHHHHHHhcccc---------ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 01111 0000 000001222222221110000 000 00 00234678999999994 44445555555
Q ss_pred C-CCCCCEEEEEeCChH-HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 171 P-RGYGERLIITSRNEK-LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 171 ~-~~~gs~IIiTTR~~~-v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
. ...++++|++|++.. +...+......+++.|++. ++...++.+.....+...+. .+....|++.++|.+..+..
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSD-SEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCH-HHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHH
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCH-HHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHH
Confidence 3 334678888888743 3233334457899999998 66777776644322222220 12567788889998877655
Q ss_pred c
Q 015891 249 F 249 (398)
Q Consensus 249 ~ 249 (398)
.
T Consensus 236 ~ 236 (354)
T 1sxj_E 236 M 236 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 29
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.88 E-value=4.2e-09 Score=98.38 Aligned_cols=177 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC-Ccccc-ceEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQFV-PRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~~v~~v~~~~~~~~~~~~i 115 (398)
++++|++..++.+..++.. +....+.|+|++|+|||++|+.+++. . ...+. ..+.+. .+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~-~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMN-ASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT----TCCCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEE-TTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhC----CCCCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEe-CccccCh-------
Confidence 5689999999999988854 33334899999999999999999876 2 11111 122233 2221000
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHH--H-hCCCcEEEecCCCC--HHHHHHHHhHcCC-CCCCEEEEEeCChH-HH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQ--L-IGKRYLIVLDDFED--MEVCKHLSKVLPR-GYGERLIITSRNEK-LT 188 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVLDdv~~--~~~~~~l~~~l~~-~~gs~IIiTTR~~~-v~ 188 (398)
.........+... + ..++.++|+||++. ....+.|...+.. ..++++|+||.... +.
T Consensus 83 ----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 83 ----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ----------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ----------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 0011111111111 1 24578999999984 4555556666653 34677787776543 22
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+......+++.|++. ++...++.+.+...+...++ +....+++.++|.+..+..
T Consensus 147 ~~l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPK-EAMKKRLLEICEKEGVKITE---DGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHTTCEEEECCCCCH-HHHHHHHHHHHHTTCCCBCH---HHHHHHHHTTTTCHHHHHH
T ss_pred hHHHhhCeEEEecCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 33334456899999998 66777777655443333333 3566788888888876544
No 30
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.88 E-value=1.6e-08 Score=90.94 Aligned_cols=131 Identities=13% Similarity=0.135 Sum_probs=82.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--cc--------------c-ceEEEEe---cCC----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QF--------------V-PRIWVCT---MSG---------------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F--------------~-~~~~v~~---v~~---------------- 104 (398)
.-.+++|+|++|+|||||++.++.-.... . .| . .+.++.. +..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 34689999999999999999996531100 0 00 0 0122210 000
Q ss_pred -cccHHHHHHHHHHHcC-CCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCC
Q 015891 105 -QKTAESIVKRILKRLG-VDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGE 176 (398)
Q Consensus 105 -~~~~~~~~~~il~~l~-~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs 176 (398)
.......+..+++.++ +... .......+.+++++..+.+.+..++-+++||++. |....+.+...+. ...|.
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ 190 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 0112234556666663 5432 2334458999999999999999999999999999 4444444443332 12478
Q ss_pred EEEEEeCChHHHHHhc
Q 015891 177 RLIITSRNEKLTTEMV 192 (398)
Q Consensus 177 ~IIiTTR~~~v~~~~~ 192 (398)
.||++||+.+.+..++
T Consensus 191 tvi~vtHd~~~~~~~~ 206 (240)
T 1ji0_A 191 TILLVEQNALGALKVA 206 (240)
T ss_dssp CEEEEESCHHHHHHHC
T ss_pred EEEEEecCHHHHHHhC
Confidence 8999999987665543
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.86 E-value=1.4e-08 Score=95.99 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=86.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc----------------eEEEEe---------cCC---------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP----------------RIWVCT---------MSG--------- 104 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~----------------~~~v~~---------v~~--------- 104 (398)
.-.+++|+|++|+|||||++.++.-..... .|+. +.++.. +.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999965311100 0110 111110 000
Q ss_pred ---cccHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCC
Q 015891 105 ---QKTAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGY 174 (398)
Q Consensus 105 ---~~~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~ 174 (398)
.........++++.+++... .......+++++++..+++.|..++-+|+||++. |......+...+. ...
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 00123456678888888653 2334458999999999999999999999999999 4433333332221 235
Q ss_pred CCEEEEEeCChHHHHHhcC
Q 015891 175 GERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 175 gs~IIiTTR~~~v~~~~~~ 193 (398)
|.+||++||+...+..+++
T Consensus 189 g~tvi~vTHd~~ea~~~aD 207 (359)
T 3fvq_A 189 GKSAVFVSHDREEALQYAD 207 (359)
T ss_dssp TCEEEEECCCHHHHHHHCS
T ss_pred CCEEEEEeCCHHHHHHHCC
Confidence 8899999999988877644
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.86 E-value=1.7e-08 Score=91.76 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE--------------EE-ecCCcc----cH--------------H
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW--------------VC-TMSGQK----TA--------------E 109 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~--------------v~-~v~~~~----~~--------------~ 109 (398)
-.+++|+|++|+|||||++.++.-. ...+.++ +. ++.+.. +. .
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 4589999999999999999997651 1111111 11 233221 11 1
Q ss_pred HHHHHHHHHcCCC-CC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCC
Q 015891 110 SIVKRILKRLGVD-DG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRN 184 (398)
Q Consensus 110 ~~~~~il~~l~~~-~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~ 184 (398)
....++++.+++. .. .......+.+++++..+++.+..++-+++||++. |....+.+...+..-.. .||++||+
T Consensus 106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd 184 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHE 184 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESC
T ss_pred HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcC
Confidence 2345677778876 42 2333458999999999999999999999999999 55555555544432222 89999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
.+.+..+
T Consensus 185 ~~~~~~~ 191 (263)
T 2pjz_A 185 LDMLNLY 191 (263)
T ss_dssp GGGGGGC
T ss_pred HHHHHHh
Confidence 8766554
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.85 E-value=4.3e-08 Score=89.43 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHcCCCC-C-CCCCc-CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVDD-G-TTNSF-EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~~-~-~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
..++++.+++.. . ..... ..+.+++++..++++|..++-+|+||++. |....+.+...+. ...|..||++||
T Consensus 143 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp HHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 446677788753 2 22222 38999999999999999999999999999 4544444444443 234789999999
Q ss_pred ChHHHHH
Q 015891 184 NEKLTTE 190 (398)
Q Consensus 184 ~~~v~~~ 190 (398)
+.+.+..
T Consensus 223 d~~~~~~ 229 (267)
T 2zu0_C 223 YQRILDY 229 (267)
T ss_dssp SGGGGGT
T ss_pred CHHHHHh
Confidence 9876654
No 34
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.85 E-value=1.1e-08 Score=97.44 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=86.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE---------------EEecCCc------c--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW---------------VCTMSGQ------K-------------- 106 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~---------------v~~v~~~------~-------------- 106 (398)
.-.+++|+|++|+|||||++.++.-... ..+.++ +.++.++ .
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~ 104 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC
Confidence 3468999999999999999999754111 011111 1111111 0
Q ss_pred ----cHHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCC
Q 015891 107 ----TAESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYG 175 (398)
Q Consensus 107 ----~~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~g 175 (398)
...+...++++.+++... ...+...+++++++..|.+.|..++-+|+||++. |......+...+. ...|
T Consensus 105 ~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g 184 (381)
T 3rlf_A 105 AKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (381)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 112345677888887653 2334458999999999999999999999999999 4433333333332 2237
Q ss_pred CEEEEEeCChHHHHHhcCC
Q 015891 176 ERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~~~~ 194 (398)
..||++||+...+..+++.
T Consensus 185 ~tii~vTHd~~ea~~~aDr 203 (381)
T 3rlf_A 185 RTMIYVTHDQVEAMTLADK 203 (381)
T ss_dssp CEEEEECSCHHHHHHHCSE
T ss_pred CEEEEEECCHHHHHHhCCE
Confidence 8999999999887776443
No 35
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.84 E-value=2.5e-08 Score=94.29 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=85.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---ccc------------ceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFV------------PRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~------------~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|+|++|+|||||++.++.-..... .|+ .+.++.. +....+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 346899999999999999999975421100 010 1112110 000000
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
..+...++++.+++... .......+++++++..+.+.|..++-+|+||++. |....+.+...+. ...|..|
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 199 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTS 199 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 12345667888887653 2334458999999999999999999999999998 4443333333332 2237899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 200 i~vTHd~~~a~~~ad 214 (355)
T 1z47_A 200 VFVTHDQEEALEVAD 214 (355)
T ss_dssp EEECSCHHHHHHHCS
T ss_pred EEECCCHHHHHHhCC
Confidence 999999888776543
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.83 E-value=3.6e-08 Score=93.56 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=85.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe---cCCccc----------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT---MSGQKT---------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~---v~~~~~---------------- 107 (398)
.-.+++|+|++|+|||||++.++.-..... .| ..+.++.. +....+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 456899999999999999999975411100 00 01112110 000000
Q ss_pred --HHHHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
..+...++++.+++.... ......+++++++..+.+.|..++-+++||++. |......+...+. ...|.++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 122356678888886542 334458999999999999999999999999998 4443333333332 2237899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 188 i~vTHd~~~a~~~ad 202 (362)
T 2it1_A 188 VYVTHDQAEALAMAD 202 (362)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEECCCHHHHHHhCC
Confidence 999999887766543
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.83 E-value=2.4e-08 Score=97.85 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=102.4
Q ss_pred CCcc-cchhh--HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc--eEEEEecCCcccHHHHH
Q 015891 38 ANVH-GFANE--ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP--RIWVCTMSGQKTAESIV 112 (398)
Q Consensus 38 ~~~v-GR~~~--~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~--~~~v~~v~~~~~~~~~~ 112 (398)
++|| |.... ...+...... .. ....+.|+|++|+||||||+.+++. ....+.. .+++. ...+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~--~~-~~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~-------~~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKH--PG-RYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT-------SEKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHS--TT-SSCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE-------HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhC--CC-CCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee-------HHHHH
Confidence 4566 64433 3334443332 11 2678999999999999999999886 4333322 33443 22233
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh-
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE- 185 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~- 185 (398)
..+...+... . ...+...+..++.+|+|||++.. ...+.+...+. ...|..||+||++.
T Consensus 173 ~~~~~~~~~~----------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 173 NDLVDSMKEG----------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp HHHHHHHHTT----------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred HHHHHHHHcc----------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 3344333211 1 12233444447889999999732 23333433332 24577899998862
Q ss_pred --------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 186 --------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 186 --------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+...+ .....+.+++++. ++...++.+.+...+...++ +....|++.+.|.+..+..
T Consensus 239 ~~l~~l~~~L~sR~-~~g~~i~l~~p~~-e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 239 QKLSEFQDRLVSRF-QMGLVAKLEPPDE-ETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp GGCSSCCHHHHHHH-HSSBCCBCCCCCH-HHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHHHhhc-cCCeEEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 333333 2245788999988 66777777644322222222 2566788888888876544
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.83 E-value=1.7e-08 Score=92.13 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=83.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------ceEEEEecCCcc-------c-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------PRIWVCTMSGQK-------T------------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------~~~~v~~v~~~~-------~------------- 107 (398)
.-.+++|+|++|+|||||++.++.-.... . .++ .+.++ .+.. +
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v---~q~~~~~~~~~tv~enl~~~~~~~~ 108 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIA---FQYPEDQFFAERVFDEVAFAVKNFY 108 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEE---CSSGGGGCCCSSHHHHHHHTTTTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEE---eccchhhcCCCcHHHHHHHHHHhcC
Confidence 45689999999999999999996541100 0 010 11222 1110 0
Q ss_pred ----HHHHHHHHHHHcCCC--CC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCC
Q 015891 108 ----AESIVKRILKRLGVD--DG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYG 175 (398)
Q Consensus 108 ----~~~~~~~il~~l~~~--~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~g 175 (398)
......++++.+++. .. .......+++++++..+.+.|..++-+++||++. |....+.+...+. ...|
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 188 (266)
T 2yz2_A 109 PDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188 (266)
T ss_dssp TTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcC
Confidence 122345677888876 32 3334458999999999999999999999999999 4444444444432 1237
Q ss_pred CEEEEEeCChHHHHHh
Q 015891 176 ERLIITSRNEKLTTEM 191 (398)
Q Consensus 176 s~IIiTTR~~~v~~~~ 191 (398)
..||++||+.+.+..+
T Consensus 189 ~tii~vtHd~~~~~~~ 204 (266)
T 2yz2_A 189 KTVILISHDIETVINH 204 (266)
T ss_dssp CEEEEECSCCTTTGGG
T ss_pred CEEEEEeCCHHHHHHh
Confidence 8999999998766654
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.83 E-value=2.2e-08 Score=90.87 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
...++++.+++... .......+.+++++..+++.+..++-+|+||++. |....+.+...+. ...|..||++||+
T Consensus 133 ~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 133 KAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45667788887643 2333458999999999999999999999999999 4444443333332 1237899999999
Q ss_pred hHHHHHh
Q 015891 185 EKLTTEM 191 (398)
Q Consensus 185 ~~v~~~~ 191 (398)
.+.+..+
T Consensus 213 ~~~~~~~ 219 (257)
T 1g6h_A 213 LDIVLNY 219 (257)
T ss_dssp CSTTGGG
T ss_pred HHHHHHh
Confidence 8766554
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.83 E-value=2e-08 Score=94.90 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=85.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccc------------eEEEEe---cCCcccHH--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVP------------RIWVCT---MSGQKTAE-------------- 109 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~------------~~~v~~---v~~~~~~~-------------- 109 (398)
.-.+++|+|++|+|||||++.++.-..... .|+. +.++.. +....+..
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 104 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 346899999999999999999976421100 0110 112110 00000110
Q ss_pred -HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEE
Q 015891 110 -SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIIT 181 (398)
Q Consensus 110 -~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiT 181 (398)
+...++++.+++.... ......+++++++..+.+.|..++-+|+||++. |....+.+...+. ...|.+||++
T Consensus 105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3355678888876532 334458999999999999999999999999998 4443333333332 2347899999
Q ss_pred eCChHHHHHhc
Q 015891 182 SRNEKLTTEMV 192 (398)
Q Consensus 182 TR~~~v~~~~~ 192 (398)
||+...+..++
T Consensus 185 THd~~~~~~~a 195 (348)
T 3d31_A 185 THDQTEARIMA 195 (348)
T ss_dssp ESCHHHHHHHC
T ss_pred eCCHHHHHHhC
Confidence 99988776653
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.82 E-value=1.9e-08 Score=90.09 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=81.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEE----EecCCcc-----cHH-----------HHHHHHHHH---
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWV----CTMSGQK-----TAE-----------SIVKRILKR--- 118 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v----~~v~~~~-----~~~-----------~~~~~il~~--- 118 (398)
.-.+++|+|++|+|||||++.+..- .. ...+.+++ .++.+.. +.. .....++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 106 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE--MD-KVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC--SE-EEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CC-CCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhh
Confidence 4468999999999999999999775 21 11222211 1122211 010 111222222
Q ss_pred ---cCCCC------CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC----CCCCCEEEEEe
Q 015891 119 ---LGVDD------GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP----RGYGERLIITS 182 (398)
Q Consensus 119 ---l~~~~------~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~----~~~gs~IIiTT 182 (398)
++... ........+++++++..+++.+..++-+++||++. |......+...+. ...+..||++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivt 186 (237)
T 2cbz_A 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186 (237)
T ss_dssp HHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEEC
T ss_pred HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 22211 01223458999999999999999999999999999 5555555555551 23478999999
Q ss_pred CChHHHHHhcCCCceEEc
Q 015891 183 RNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l 200 (398)
|+.+.+.. .++++.+
T Consensus 187 H~~~~~~~---~d~v~~l 201 (237)
T 2cbz_A 187 HSMSYLPQ---VDVIIVM 201 (237)
T ss_dssp SCSTTGGG---SSEEEEE
T ss_pred cChHHHHh---CCEEEEE
Confidence 99876543 2444444
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.82 E-value=6.8e-09 Score=92.66 Aligned_cols=169 Identities=16% Similarity=0.113 Sum_probs=96.9
Q ss_pred CCcccch---hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFA---NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~---~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
++|+|.+ ..++.+..++.. .....+.|+|++|+||||||+.+++. .........++. .......
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~-~~~~~~~------ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG----DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIP-LGIHASI------ 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT----CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-GGGGGGS------
T ss_pred hhccCCCCCHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-HHHHHHH------
Confidence 5688743 556666666643 35678999999999999999999876 332223345555 3321100
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCC-CEEEEEeCCh--
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYG-ERLIITSRNE-- 185 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~g-s~IIiTTR~~-- 185 (398)
+ . .. + .. ..++.+||+||++.. .+.+.+...+. ...+ .++|+||+..
T Consensus 95 ----~--~---------~~-------~-~~-~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 95 ----S--T---------AL-------L-EG-LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp ----C--G---------GG-------G-TT-GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred ----H--H---------HH-------H-Hh-ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 0 0 00 0 00 134689999999832 22344443332 1122 2477777632
Q ss_pred -------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 186 -------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 186 -------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+...+ .....+++.+++. ++...++.+.+...+...++ +....|++.+.|.+..+..
T Consensus 151 ~~~~~~~~l~~r~-~~~~~i~l~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 151 EAGFVLPDLVSRM-HWGLTYQLQPMMD-DEKLAALQRRAAMRGLQLPE---DVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp TTTCCCHHHHHHH-HHSEEEECCCCCG-GGHHHHHHHHHHHTTCCCCH---HHHHHHHHHTTTCHHHHHH
T ss_pred HHHHhhhhhhhHh-hcCceEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHccCCHHHHHH
Confidence 222222 1126899999999 66777777654322222222 3566788888888876654
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.82 E-value=1.1e-07 Score=84.84 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=82.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHH-----------HHHHHHHHHcCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAE-----------SIVKRILKRLGV 121 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~-----------~~~~~il~~l~~ 121 (398)
.-.+++|+|++|+|||||++.++.- ... ..+.++ +.++.+.. +.. ......+..+++
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl--~~p-~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l 109 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE--LEP-SEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS--SCC-SEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CcC-CccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCc
Confidence 3468999999999999999999875 211 112111 11122211 111 111223333222
Q ss_pred CC------C------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC-CCCCCEEEEEeCC
Q 015891 122 DD------G------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP-RGYGERLIITSRN 184 (398)
Q Consensus 122 ~~------~------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~-~~~gs~IIiTTR~ 184 (398)
.. . .......+.+++++..+++.+..++-+++||++. |....+.+... +. ...+..||++||+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~ 189 (229)
T 2pze_A 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189 (229)
T ss_dssp HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCC
T ss_pred HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCC
Confidence 11 0 0112358999999999999999999999999999 55666666654 32 2347899999999
Q ss_pred hHHHHHhcCCCceEEc
Q 015891 185 EKLTTEMVGEENLHQL 200 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l 200 (398)
.+.+.. .++++.+
T Consensus 190 ~~~~~~---~d~v~~l 202 (229)
T 2pze_A 190 MEHLKK---ADKILIL 202 (229)
T ss_dssp HHHHHH---CSEEEEE
T ss_pred hHHHHh---CCEEEEE
Confidence 877654 2444444
No 44
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.81 E-value=2.1e-08 Score=95.03 Aligned_cols=132 Identities=15% Similarity=0.148 Sum_probs=85.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe---cCCc---------------ccH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT---MSGQ---------------KTA 108 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~---v~~~---------------~~~ 108 (398)
.-.+++|+|++|+|||||++.++.-..... .| ..+.++.. +... ...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 456899999999999999999975311000 00 01112110 0000 000
Q ss_pred ---HHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 109 ---ESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 109 ---~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
.....++++.+++... .......+++++++..+.+.|..++-+|+||++. |....+.+...+. ...|..+
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 1345678888888653 3334458999999999999999999999999998 4433333333332 2237899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 188 i~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 188 VYVTHDQAEAMTMAS 202 (359)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEEcCCHHHHHHhCC
Confidence 999999887766543
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.80 E-value=1.5e-08 Score=89.33 Aligned_cols=128 Identities=19% Similarity=0.089 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc---------ceEEEEecC---CcccH----------------HHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV---------PRIWVCTMS---GQKTA----------------ESI 111 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~---------~~~~v~~v~---~~~~~----------------~~~ 111 (398)
-.+++|+|++|+|||||++.++.-.... . .|. .+.++..-. ...+. ...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 114 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE 114 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHH
Confidence 4579999999999999999997642110 0 011 112221000 00011 223
Q ss_pred HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
..++++.+++..........+.+++++..+.+.+..++-+++||++.+ ....+.+...+. ...|..||++||+.+
T Consensus 115 ~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 115 IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp HHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred HHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 456777788765422334589999999999999999999999999983 322222222221 123678999999976
Q ss_pred HHHH
Q 015891 187 LTTE 190 (398)
Q Consensus 187 v~~~ 190 (398)
.+..
T Consensus 195 ~~~~ 198 (214)
T 1sgw_A 195 SYCD 198 (214)
T ss_dssp TTSS
T ss_pred HHHH
Confidence 5443
No 46
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.80 E-value=3.5e-08 Score=89.20 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHcCCC-C-CCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 112 VKRILKRLGVD-D-GTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 112 ~~~il~~l~~~-~-~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
..++++.+++. . ....... .+.+++++..+.+.|..++-+|+||++. |....+.+...+. ...|..||++||
T Consensus 122 ~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp HHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34566777773 2 2233344 7999999999999999999999999999 4444444443332 235789999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+.+.+..+ ..++++.+
T Consensus 202 d~~~~~~~-~~d~v~~l 217 (250)
T 2d2e_A 202 YQRILNYI-QPDKVHVM 217 (250)
T ss_dssp SSGGGGTS-CCSEEEEE
T ss_pred CHHHHHHh-cCCEEEEE
Confidence 98766543 12344444
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.79 E-value=2.9e-08 Score=94.80 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=105.4
Q ss_pred CCCcccchhhHHHHH---HHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEe---cCCcccHHH
Q 015891 37 PANVHGFANEELHLQ---KLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCT---MSGQKTAES 110 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~---~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~---v~~~~~~~~ 110 (398)
.++|+|++..++.+. ..+.. .....+.+.|+|++|+|||+||+.+++. ...... .+.+.. .+.......
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~--~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~~-~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIRE--GKIAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDTP-FTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHT--TCCTTCEEEEEESTTSSHHHHHHHHHHH--HCSSCC-EEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCCCHHHHHHHHHHH--hcccCC-cccccchhhhhcccchhH
Confidence 467999999877744 44433 2223468999999999999999999887 322111 111110 112223333
Q ss_pred HHHHHHHHc-CCC--------------------CC----CCCCcCCCchHHHHHHHHHHH-----hCC----CcEEEecC
Q 015891 111 IVKRILKRL-GVD--------------------DG----TTNSFEGQGLAFLDYVLQQQL-----IGK----RYLIVLDD 156 (398)
Q Consensus 111 ~~~~il~~l-~~~--------------------~~----~~~~~~~~~~~~~~~~l~~~l-----~~k----~~LlVLDd 156 (398)
.+...+... +.. .. .............+..+.... .++ +.+|++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 333333321 110 00 000000011222333332222 122 46999999
Q ss_pred CC--CHHHHHHHHhHcCCCCCCEEEEEeCC-------------hHHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCC
Q 015891 157 FE--DMEVCKHLSKVLPRGYGERLIITSRN-------------EKLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKD 221 (398)
Q Consensus 157 v~--~~~~~~~l~~~l~~~~gs~IIiTTR~-------------~~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~ 221 (398)
++ +.+....+...+.......++++|.. ..+...+......+.++|++. ++...++.+.+....
T Consensus 198 i~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~-~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSE-KDTKQILRIRCEEED 276 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCH-HHHHHHHHHHHHHTT
T ss_pred ccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCH-HHHHHHHHHHHHHcC
Confidence 99 44655666666654333445555531 111111223334589999988 667777776544333
Q ss_pred CcchHHHHHHHHHHHHhcC-CCchhhhc
Q 015891 222 AQLKSQARKDLEEKLEKLQ-GQNEDAVN 248 (398)
Q Consensus 222 ~~~~~~~~~~~~~I~~~c~-GlPlai~~ 248 (398)
...++ +....|++.+. |.|..+..
T Consensus 277 ~~~~~---~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 277 VEMSE---DAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CCBCH---HHHHHHHHHHHHSCHHHHHH
T ss_pred CCCCH---HHHHHHHHHhcCCCHHHHHH
Confidence 33333 35667778887 77776554
No 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.78 E-value=7.6e-09 Score=98.56 Aligned_cols=132 Identities=13% Similarity=0.106 Sum_probs=85.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cc------------cceEEEEe-------cC--C---------ccc-
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QF------------VPRIWVCT-------MS--G---------QKT- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F------------~~~~~v~~-------v~--~---------~~~- 107 (398)
.-.+++|+|++|+|||||++.++.-..... .| ..+.++.. .+ + ...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 115 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 115 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 456899999999999999999965311000 00 01111110 00 0 001
Q ss_pred --HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEE
Q 015891 108 --AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERL 178 (398)
Q Consensus 108 --~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~I 178 (398)
..+...++++.+++... .......+++++++..+.+.|..++-+|+||++. |....+.+...+. ...|..|
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 12346678888887653 3334458999999999999999999999999998 4443333333332 2237899
Q ss_pred EEEeCChHHHHHhcC
Q 015891 179 IITSRNEKLTTEMVG 193 (398)
Q Consensus 179 IiTTR~~~v~~~~~~ 193 (398)
|++||+...+..+++
T Consensus 196 i~vTHd~~~a~~~ad 210 (372)
T 1v43_A 196 IYVTHDQVEAMTMGD 210 (372)
T ss_dssp EEEESCHHHHHHHCS
T ss_pred EEEeCCHHHHHHhCC
Confidence 999999887766543
No 49
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.78 E-value=3.8e-08 Score=93.85 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=85.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc---cccceEE---------------EEecCCc------cc----------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---QFVPRIW---------------VCTMSGQ------KT---------- 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~~---------------v~~v~~~------~~---------- 107 (398)
.-.+++|+|++|+|||||++.++.-..... .|+..-+ +.++.+. .+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 346899999999999999999975421100 0111000 1111111 01
Q ss_pred --------HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---C
Q 015891 108 --------AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---R 172 (398)
Q Consensus 108 --------~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~ 172 (398)
..+...++++.+++... .......+++++++..+.+.|..++-+|+||++. |......+...+. .
T Consensus 108 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 187 (372)
T 1g29_1 108 LRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187 (372)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH
Confidence 11235567788887653 2334458999999999999999999999999998 4433333333332 2
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..|..||++||+...+..+++
T Consensus 188 ~~g~tvi~vTHd~~~a~~~ad 208 (372)
T 1g29_1 188 QLGVTTIYVTHDQVEAMTMGD 208 (372)
T ss_dssp HHTCEEEEEESCHHHHHHHCS
T ss_pred hcCCEEEEECCCHHHHHHhCC
Confidence 237899999999888776543
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.7e-08 Score=94.03 Aligned_cols=171 Identities=9% Similarity=0.056 Sum_probs=101.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCC---Cc---cccceEEEEecCCcccHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDV---KT---QFVPRIWVCTMSGQKTAESI 111 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~---~~---~F~~~~~v~~v~~~~~~~~~ 111 (398)
..+.||+++++.|...|...-.......+.|+|++|+|||++++.+++.... .. .| ..+.+. .....+....
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~IN-c~~~~t~~~~ 97 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHID-ALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEE-TTCCC--HHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEe-ccccCCHHHH
Confidence 3488999999999988876434567788999999999999999999876210 01 12 234555 5556677788
Q ss_pred HHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHH--HhCCCcEEEecCCCCHHHHHHHHhHc--CCCCCC--EEEEEeCCh
Q 015891 112 VKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQ--LIGKRYLIVLDDFEDMEVCKHLSKVL--PRGYGE--RLIITSRNE 185 (398)
Q Consensus 112 ~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~k~~LlVLDdv~~~~~~~~l~~~l--~~~~gs--~IIiTTR~~ 185 (398)
+..|++++...... .....+.+...+... -..++++++||+++.....+.|..++ +....+ .||.++.+.
T Consensus 98 ~~~I~~~L~g~~~~----~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 98 YEKIWFAISKENLC----GDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHhcCCCCC----chHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 88999988543211 112222223333321 13567999999999531122233222 112233 344445443
Q ss_pred HH----H-----HHhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891 186 KL----T-----TEMVGEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 186 ~v----~-----~~~~~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
+. . ..+ ....+.+.|.+. ++...++.+.+
T Consensus 174 d~~~~~L~~~v~SR~--~~~~i~F~pYt~-~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKA--HFTEIKLNKVDK-NELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHT--TEEEEECCCCCH-HHHHHHHHHHH
T ss_pred ccchhhcchhhhccC--CceEEEeCCCCH-HHHHHHHHHHH
Confidence 21 1 121 125789999999 66777666543
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.77 E-value=1.5e-08 Score=99.31 Aligned_cols=173 Identities=18% Similarity=0.268 Sum_probs=100.7
Q ss_pred CCcccchhhH---HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEE---LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~---~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
++++|.+..+ ..|...+.. .....+.|+|++|+||||||+.+++. ....|. .+. .. ..... .+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~----~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f~---~l~-a~-~~~~~-~ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA----GHLHSMILWGPPGTGKTTLAEVIARY--ANADVE---RIS-AV-TSGVK-EIRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH----TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEEE---EEE-TT-TCCHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc----CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCeE---EEE-ec-cCCHH-HHHH
Confidence 6789999888 778888865 34578999999999999999999987 333332 112 11 11111 1111
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH--HHHHHHHhHcCCCCCCEEEE-EeCChH--HHH
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM--EVCKHLSKVLPRGYGERLII-TSRNEK--LTT 189 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~--~~~~~l~~~l~~~~gs~IIi-TTR~~~--v~~ 189 (398)
++.. ........++.+|++||++.. ...+.|...+..+ ...+|. ||.+.. +..
T Consensus 94 ~~~~---------------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 94 AIER---------------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHH---------------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCH
T ss_pred HHHH---------------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCH
Confidence 1111 001112356889999999943 3333344444332 334444 544432 222
Q ss_pred HhcCCCceEEcCCCCChhHHHHHHHhhhCC-------CCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 190 EMVGEENLHQLQPLSDQESCWLIYRDSVRD-------KDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 190 ~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.+.....++.+.+++. ++...++.+.+.. ..... ..+..+.|++.+.|.+..+..
T Consensus 152 aL~sR~~v~~l~~l~~-edi~~il~~~l~~~~~~~~~~~~~i---~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 152 ALLSRARVYLLKSLST-EDIEQVLTQAMEDKTRGYGGQDIVL---PDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHHTTEEEEECCCCCH-HHHHHHHHHHHHCTTTSSTTSSEEC---CHHHHHHHHHHHCSCHHHHHH
T ss_pred HHhCceeEEeeCCcCH-HHHHHHHHHHHHHHhhhhccccCcC---CHHHHHHHHHHCCCCHHHHHH
Confidence 2224456889999998 6677777775543 11222 233667778888888876554
No 52
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.77 E-value=4.9e-08 Score=89.81 Aligned_cols=184 Identities=15% Similarity=0.226 Sum_probs=102.8
Q ss_pred CCCCCCcccchhhHHHHHHHHhccC---------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRG---------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG 104 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~ 104 (398)
....++++|.+..++.|.+.+.... .......+.|+|++|+|||+||+.+++. ....| +.+. ...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~-~~~ 86 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVV-GSE 86 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEE-GGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-hHH
Confidence 3445789999999999998874310 1134567999999999999999999887 33222 2222 111
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc-
Q 015891 105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL- 170 (398)
Q Consensus 105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l- 170 (398)
-.. . ............+.......+.+|+|||++.. .....+...+
T Consensus 87 ~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 87 LVK--------------K------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp GCC--------------C------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHH--------------h------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 000 0 00011222233344444567789999999743 1122222222
Q ss_pred -----CCCCCCEEEEEeCChHHHH-Hhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCC
Q 015891 171 -----PRGYGERLIITSRNEKLTT-EMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQG 241 (398)
Q Consensus 171 -----~~~~gs~IIiTTR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~G 241 (398)
....+..||.||....... .+. .....+.+++.+. ++...++...+.......+. ....+++.+.|
T Consensus 147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g 221 (285)
T 3h4m_A 147 EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDE-KGRLEILKIHTRKMNLAEDV----NLEEIAKMTEG 221 (285)
T ss_dssp HHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCH-HHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTT
T ss_pred HhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCH-HHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCC
Confidence 2234567788887543211 111 1234688988887 66777877755443222111 34567777777
Q ss_pred C-chhhhc
Q 015891 242 Q-NEDAVN 248 (398)
Q Consensus 242 l-Plai~~ 248 (398)
. |..|..
T Consensus 222 ~~~~~i~~ 229 (285)
T 3h4m_A 222 CVGAELKA 229 (285)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 4 334433
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=4e-08 Score=93.14 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=105.3
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccc-eEEEEecCCcccHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVP-RIWVCTMSGQKTAESIVK 113 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~-~~~v~~v~~~~~~~~~~~ 113 (398)
..+++|++..++.+..++.. .....+.|+|++|+||||+|+.+++. +.. .+.. ...+. .+....... +.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~la~~--l~~~~~~~~~~~~~~-~~~~~~~~~-~~ 107 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKS----ANLPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELN-ASDERGISI-VR 107 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTC----TTCCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEEC-SSSCCCHHH-HT
T ss_pred HHHhhCCHHHHHHHHHHHhc----CCCCEEEEECCCCCCHHHHHHHHHHH--hCCCcccccceEEEc-cccccchHH-HH
Confidence 36799999999999999864 22333899999999999999999876 221 1211 22222 222222222 11
Q ss_pred HHHHHcC-CCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CCCCCEEEEEeCChH-HH
Q 015891 114 RILKRLG-VDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RGYGERLIITSRNEK-LT 188 (398)
Q Consensus 114 ~il~~l~-~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~ 188 (398)
..+..+. ...... ... .....-..++.+|++||++. ....+.+...+. .....++|++|.... +.
T Consensus 108 ~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 108 EKVKNFARLTVSKP----SKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177 (353)
T ss_dssp THHHHHHHSCCCCC----CTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred HHHHHHhhhccccc----chh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCc
Confidence 1111111 000000 000 00001123456999999983 444455555543 234567777775432 22
Q ss_pred HHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 189 TEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 189 ~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..+......+.+.|++. ++....+.+.+...+...++ +..+.|++.++|.|..+..
T Consensus 178 ~~l~sR~~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~---~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDA-SNAIDRLRFISEQENVKCDD---GVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHHHSEEEECCCCCH-HHHHHHHHHHHHTTTCCCCH---HHHHHHHHHTSSCHHHHHH
T ss_pred chhhccCceEEeCCCCH-HHHHHHHHHHHHHhCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 22222234789999998 55666666654333322223 3667888899999887554
No 54
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.75 E-value=1.7e-08 Score=86.54 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+.++||++.++.+.+.+.. .....+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999854 44567899999999999999999775
No 55
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.73 E-value=4.2e-08 Score=92.93 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=84.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-c--ccc-----------------ceEEEEe---cCCc-------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-T--QFV-----------------PRIWVCT---MSGQ------------- 105 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~--~F~-----------------~~~~v~~---v~~~------------- 105 (398)
.-.+++|+|++|+|||||++.++.-.... . .|+ .+.++.. +...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~ 109 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHH
Confidence 44689999999999999999997531110 0 011 1112210 0000
Q ss_pred --cc---HHHHHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CC
Q 015891 106 --KT---AESIVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RG 173 (398)
Q Consensus 106 --~~---~~~~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~ 173 (398)
.. ..+...++++.+++... .......+++++++..+++.|..++-+|+||++. |....+.+...+. ..
T Consensus 110 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 189 (353)
T 1oxx_K 110 MKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189 (353)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 01 12345678888888653 2334458999999999999999999999999998 3322222222221 22
Q ss_pred CCCEEEEEeCChHHHHHhcC
Q 015891 174 YGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~~~~ 193 (398)
.|..||++||+.+.+..+++
T Consensus 190 ~g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 190 LGVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp HCCEEEEEESCHHHHHHHCS
T ss_pred cCCEEEEEeCCHHHHHHhCC
Confidence 37889999999887766543
No 56
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=2.8e-08 Score=93.11 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=102.3
Q ss_pred CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
.++|+|++..++.+..++.... .......+.|+|++|+|||+||+.+++. .... ..++. .........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~-~~~~~~~~~----- 79 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTS-GPAIEKPGD----- 79 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEEC-TTTCCSHHH-----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEe-ccccCChHH-----
Confidence 3679999999999988886410 1123467899999999999999999886 2222 22333 222111111
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCCH--HHHHHHHhHcCCC-----------------
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFEDM--EVCKHLSKVLPRG----------------- 173 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~~--~~~~~l~~~l~~~----------------- 173 (398)
+...+. .++.+|+|||++.. .....+...+...
T Consensus 80 -------------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 80 -------------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp -------------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred -------------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 111221 35679999999843 3333333333210
Q ss_pred --CCCEEEEEeCChH-HHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 174 --YGERLIITSRNEK-LTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 174 --~gs~IIiTTR~~~-v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
++.++|.||.... +...+... ...+.+.+++. ++...++.+.+.......++ +....+++.+.|.|..+..
T Consensus 135 ~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~-~e~~~~l~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~ 209 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP-EELAQGVMRDARLLGVRITE---EAALEIGRRSRGTMRVAKR 209 (324)
T ss_dssp ECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCH-HHHHHHHHHHHHTTTCCCCH---HHHHHHHHHSCSCHHHHHH
T ss_pred CCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHccCCHHHHHH
Confidence 2356777766432 11111122 35889999998 66777777755433333222 3667788889999976554
No 57
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.72 E-value=9e-08 Score=87.49 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+.+.|..++-+|+||++. |......+...+. ...|..||++||+...+.. .++++.+
T Consensus 155 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~---~d~v~~l 229 (271)
T 2ixe_A 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER---AHHILFL 229 (271)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT---CSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh---CCEEEEE
Confidence 458999999999999999999999999999 4544444444443 2237899999999887653 3445544
No 58
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.72 E-value=2.5e-08 Score=91.50 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEE--EEEe
Q 015891 111 IVKRILKRLGVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERL--IITS 182 (398)
Q Consensus 111 ~~~~il~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~I--IiTT 182 (398)
...++++.+++... .......+.+++++..+++.+..++-+|+||++. |....+.+...+. ...|..| |++|
T Consensus 141 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 141 EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 34567777887543 2333458999999999999999999999999999 4444443333332 1226678 9999
Q ss_pred CChHHHHHh
Q 015891 183 RNEKLTTEM 191 (398)
Q Consensus 183 R~~~v~~~~ 191 (398)
|+.+.+..+
T Consensus 221 Hd~~~~~~~ 229 (279)
T 2ihy_A 221 HFIEEITAN 229 (279)
T ss_dssp SCGGGCCTT
T ss_pred cCHHHHHHh
Confidence 998765443
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.70 E-value=5.4e-08 Score=87.72 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=49.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+..++-+|+||++. |......+...+. ...|..||++||+...+.. .++++.+
T Consensus 144 ~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~---~d~v~~l 216 (247)
T 2ff7_A 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---ADRIIVM 216 (247)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT---SSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh---CCEEEEE
Confidence 358999999999999999999999999999 4433333333332 1247899999999876543 3445544
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.69 E-value=1.1e-07 Score=96.48 Aligned_cols=136 Identities=18% Similarity=0.203 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--cc-ceEEEEecC---CcccHH--------------HHHHHHHHHcCC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FV-PRIWVCTMS---GQKTAE--------------SIVKRILKRLGV 121 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~-~~~~v~~v~---~~~~~~--------------~~~~~il~~l~~ 121 (398)
-.+++|+|++|+|||||++.++.-... ... +. .+.++..-. ...+.. ....+++..+++
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999875211 111 11 122221000 011111 123456677777
Q ss_pred CCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891 122 DDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 122 ~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
..... .....+++++++..++++|..++-+|+||++. |......+...+. ...|..||++||+...+..++
T Consensus 462 ~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a-- 539 (607)
T 3bk7_A 462 IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS-- 539 (607)
T ss_dssp TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC--
T ss_pred chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence 64322 33458999999999999999999999999999 4444333433332 234788999999998887764
Q ss_pred CceEEc
Q 015891 195 ENLHQL 200 (398)
Q Consensus 195 ~~~~~l 200 (398)
++++.+
T Consensus 540 drv~vl 545 (607)
T 3bk7_A 540 DRLIVF 545 (607)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 344444
No 61
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.68 E-value=7.1e-08 Score=86.78 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=82.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC----------------ccc-cceEEEEe--------cCC-------cccHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK----------------TQF-VPRIWVCT--------MSG-------QKTAE 109 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~----------------~~F-~~~~~v~~--------v~~-------~~~~~ 109 (398)
.-.+++|+|++|+|||||++.++.-.... ..+ ..+.++.. +.+ .....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~ 106 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCH
Confidence 45689999999999999999996431100 000 00112110 100 00112
Q ss_pred HHHHHHHHHcCCCCCCC------------CCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------HHHHHHHhHc
Q 015891 110 SIVKRILKRLGVDDGTT------------NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------EVCKHLSKVL 170 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------~~~~~l~~~l 170 (398)
.....++..+++..... .....+.+++++..+++.+..++-+++||++.+. ...+.+....
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 33455666666543211 1235899999999999999999999999999832 4444444332
Q ss_pred CCCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 171 PRGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 171 ~~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
.|..||++||+...+.. .++++.+
T Consensus 187 ---~~~tvi~vtH~~~~~~~---~d~v~~l 210 (243)
T 1mv5_A 187 ---KGRTTLVIAHRLSTIVD---ADKIYFI 210 (243)
T ss_dssp ---TTSEEEEECCSHHHHHH---CSEEEEE
T ss_pred ---CCCEEEEEeCChHHHHh---CCEEEEE
Confidence 37899999999887654 2444444
No 62
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.68 E-value=4.9e-08 Score=92.15 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=102.8
Q ss_pred CCCcccchhhHHHHHHHHhccC-CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHH
Q 015891 37 PANVHGFANEELHLQKLLSNRG-TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~-~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~i 115 (398)
.++++|++..++.+..++.... .......+.|+|++|+|||+||+.+++. ....| +.+. .......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~-~~~~~~~------- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTA-APMIEKS------- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEE-GGGCCSH-------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEec-chhccch-------
Confidence 3679999999999999887510 1234567899999999999999999876 33332 2222 2111110
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHH--hCCCcEEEecCCCC--HHHHHHHHhHcCCC------------------
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL--IGKRYLIVLDDFED--MEVCKHLSKVLPRG------------------ 173 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVLDdv~~--~~~~~~l~~~l~~~------------------ 173 (398)
. .+...+ ..+..+|+|||++. ......+...+...
T Consensus 95 -------------------~----~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 95 -------------------G----DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp -------------------H----HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred -------------------h----HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 0 111122 23578999999994 34444444333211
Q ss_pred -CCCEEEEEeCChH-HHHHhcC-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 174 -YGERLIITSRNEK-LTTEMVG-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 174 -~gs~IIiTTR~~~-v~~~~~~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
++..+|.+|.... +...+.. ....+.+.+++. ++...++.+.........++ +....|++.+.|.|..+..
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~-~e~~~il~~~~~~~~~~~~~---~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD-SELALILQKAALKLNKTCEE---KAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHTTCEECH---HHHHHHHHTTTTCHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHCcCHHHHHH
Confidence 1246666665532 1111112 246899999988 66777777654433322222 3566788889999866554
No 63
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.67 E-value=3.1e-07 Score=86.18 Aligned_cols=177 Identities=15% Similarity=0.212 Sum_probs=94.9
Q ss_pred CCCcc-cch--hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHH
Q 015891 37 PANVH-GFA--NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVK 113 (398)
Q Consensus 37 ~~~~v-GR~--~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~ 113 (398)
.++|+ |.. .....+..++.. .......+.|+|++|+||||||+.+++. ....-...++++ . .....
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~--~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~-~------~~~~~ 78 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALEN--LGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS-A------DDFAQ 78 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHT--TTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE-H------HHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhC--cCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE-H------HHHHH
Confidence 35565 533 233445555543 2224567999999999999999999876 221111233443 2 22233
Q ss_pred HHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----HHHHHHHhHcC--CCCCCEEEEEeCCh--
Q 015891 114 RILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----EVCKHLSKVLP--RGYGERLIITSRNE-- 185 (398)
Q Consensus 114 ~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----~~~~~l~~~l~--~~~gs~IIiTTR~~-- 185 (398)
.+...+... . ...+...+ .++.+|++||++.. ...+.+...+. ...+..||+||...
T Consensus 79 ~~~~~~~~~----------~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 79 AMVEHLKKG----------T----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHHHHHHHT----------C----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHHHHHHcC----------c----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 333322110 0 11222223 24789999999732 23333333332 23466788887632
Q ss_pred -------HHHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhh
Q 015891 186 -------KLTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDA 246 (398)
Q Consensus 186 -------~v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai 246 (398)
.+...+ .....++++| +. ++...++.+.+.......++ +....|++.+ |....+
T Consensus 144 ~l~~l~~~L~sR~-~~~~~i~l~~-~~-~e~~~il~~~~~~~~~~l~~---~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 144 KLDGVSDRLVSRF-EGGILVEIEL-DN-KTRFKIIKEKLKEFNLELRK---EVIDYLLENT-KNVREI 204 (324)
T ss_dssp GCTTSCHHHHHHH-HTSEEEECCC-CH-HHHHHHHHHHHHHTTCCCCH---HHHHHHHHHC-SSHHHH
T ss_pred HHHHhhhHhhhcc-cCceEEEeCC-CH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHhC-CCHHHH
Confidence 233333 2236789999 66 66777777654332223333 3556677777 776543
No 64
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.66 E-value=2.1e-07 Score=86.56 Aligned_cols=163 Identities=14% Similarity=0.166 Sum_probs=91.4
Q ss_pred CcccchhhHHHHHHHHhcc-----------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 39 NVHGFANEELHLQKLLSNR-----------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~-----------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.++|.+..++.|.+++... ........+.|+|++|+|||+||+.+++............++. +...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~-~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS-VTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEE-ECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEE-EcHH--
Confidence 5899999999988776521 0134456799999999999999998876511111111111222 2210
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC-----------CHHHHHHHHhHcC-CCCC
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE-----------DMEVCKHLSKVLP-RGYG 175 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~-----------~~~~~~~l~~~l~-~~~g 175 (398)
.+... ............+.. .++.+|+|||++ +......|...+. ...+
T Consensus 109 ----------~l~~~------~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 109 ----------DLVGQ------YIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp ----------GTCCS------STTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred ----------Hhhhh------cccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 01000 000111122222222 246799999998 4455555555554 3446
Q ss_pred CEEEEEeCChH----------HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHH
Q 015891 176 ERLIITSRNEK----------LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQ 227 (398)
Q Consensus 176 s~IIiTTR~~~----------v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~ 227 (398)
..||+||.... +...+ ...+.+++++. ++...++.+.+........+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~---~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~ 227 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRI---AHHIEFPDYSD-EELFEIAGHMLDDQNYQMTPE 227 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHE---EEEEEECCCCH-HHHHHHHHHHHHHTTCEECHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhC---CeEEEcCCcCH-HHHHHHHHHHHHHcCCCCCHH
Confidence 77888876432 22222 36889999998 667777776554333333443
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.65 E-value=9e-08 Score=96.00 Aligned_cols=132 Identities=11% Similarity=0.141 Sum_probs=84.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC--CCc----------cccc----------------eEEEE-ecCCc-----cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKT----------QFVP----------------RIWVC-TMSGQ-----KT 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~----------~F~~----------------~~~v~-~v~~~-----~~ 107 (398)
.-.+++|+|++|+|||||++.+..-.. ... .|.. ..++. ++... ..
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 125 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK 125 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhcc
Confidence 456899999999999999999976411 000 0110 01111 00000 01
Q ss_pred HHH---------HHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891 108 AES---------IVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 108 ~~~---------~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
... ...+++..+++..... .....+++++++..|++.|..++-+|+||++. |....+.+...+. .
T Consensus 126 v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 205 (538)
T 1yqt_A 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205 (538)
T ss_dssp HHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 111 2456788888865332 33358999999999999999999999999999 4443333322222 1
Q ss_pred CCCCEEEEEeCChHHHHHhcC
Q 015891 173 GYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~~ 193 (398)
..|..||++||+...+..+++
T Consensus 206 ~~g~tvi~vsHd~~~~~~~~d 226 (538)
T 1yqt_A 206 EEGKSVLVVEHDLAVLDYLSD 226 (538)
T ss_dssp HTTCEEEEECSCHHHHHHHCS
T ss_pred hcCCEEEEEeCCHHHHHHhCC
Confidence 247899999999988877543
No 66
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.65 E-value=2.1e-07 Score=85.74 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=78.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEE----EEecCCcc-----cHHHH----------HHHHHHHcCCC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIW----VCTMSGQK-----TAESI----------VKRILKRLGVD 122 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~----v~~v~~~~-----~~~~~----------~~~il~~l~~~ 122 (398)
.-.+++|+|++|+|||||++.+..- .. ...+.++ +.++.+.. +..+. ....+..+++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl--~~-p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~ 139 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE--LE-PSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE 139 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS--SC-EEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC--CC-CCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChH
Confidence 4568999999999999999999765 21 1111111 11122211 11111 11222222221
Q ss_pred C-----C-------CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhH-cC-CCCCCEEEEEeCCh
Q 015891 123 D-----G-------TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKV-LP-RGYGERLIITSRNE 185 (398)
Q Consensus 123 ~-----~-------~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~-l~-~~~gs~IIiTTR~~ 185 (398)
. . .......+++++++..+++.+..++-+++||++. |....+.+... +. ...+..||++||+.
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~ 219 (290)
T 2bbs_A 140 EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219 (290)
T ss_dssp HHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred HHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 1 0 0011358999999999999999999999999999 55555566554 22 23478999999998
Q ss_pred HHHHH
Q 015891 186 KLTTE 190 (398)
Q Consensus 186 ~v~~~ 190 (398)
+.+..
T Consensus 220 ~~~~~ 224 (290)
T 2bbs_A 220 EHLKK 224 (290)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 87654
No 67
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.64 E-value=7.4e-08 Score=96.59 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=84.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCC-Ccc--ccc-eEEEEecC---CcccHHHH--------------HHHHHHHcCC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDV-KTQ--FVP-RIWVCTMS---GQKTAESI--------------VKRILKRLGV 121 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-~~~v~~v~---~~~~~~~~--------------~~~il~~l~~ 121 (398)
-.+++|+|++|+|||||++.++.-... ... +.. +.++..-. ...+.... ...++..+++
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999875211 111 111 22222000 01122221 2233344454
Q ss_pred CCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCC
Q 015891 122 DDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 122 ~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
... .......+++++++..++++|..++-+||||++. |......+...+. ...|..||++||+.+.+..++
T Consensus 392 ~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~-- 469 (538)
T 1yqt_A 392 IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS-- 469 (538)
T ss_dssp GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC--
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--
Confidence 332 2233458999999999999999999999999999 4444333433332 124788999999998887764
Q ss_pred CceEEc
Q 015891 195 ENLHQL 200 (398)
Q Consensus 195 ~~~~~l 200 (398)
++++.+
T Consensus 470 drv~vl 475 (538)
T 1yqt_A 470 DRLMVF 475 (538)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 344444
No 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.64 E-value=7.7e-07 Score=81.25 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=98.7
Q ss_pred CCCcccchhhHHHHHHH-------HhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHH
Q 015891 37 PANVHGFANEELHLQKL-------LSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAE 109 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~-------L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~ 109 (398)
...++|....++.+... +.. ........+.|+|++|+|||+||+.+++. ....| +.+. ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~-~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~-~~~~---- 100 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKN-SDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKIC-SPDK---- 100 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHH-CSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEE-CGGG----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhc-cCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-CHHH----
Confidence 45688988887776662 321 12456788999999999999999999886 22222 1222 1110
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH------------HHHHHHHhHcCC----C
Q 015891 110 SIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM------------EVCKHLSKVLPR----G 173 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~------------~~~~~l~~~l~~----~ 173 (398)
.++.. ...........+......++.+|+|||++.. ...+.+...+.. .
T Consensus 101 --------~~g~~-------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 165 (272)
T 1d2n_A 101 --------MIGFS-------ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG 165 (272)
T ss_dssp --------CTTCC-------HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTT
T ss_pred --------hcCCc-------hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCC
Confidence 00000 0001112223333444466889999998632 344555544431 2
Q ss_pred CCCEEEEEeCChHHHHH--hcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 174 YGERLIITSRNEKLTTE--MVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 174 ~gs~IIiTTR~~~v~~~--~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
....||.||........ +.+. ...+.+++++..++...++.+... . . .+....|++.+.|.+
T Consensus 166 ~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~---~--~---~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 166 RKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN---F--K---DKERTTIAQQVKGKK 230 (272)
T ss_dssp CEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC---S--C---HHHHHHHHHHHTTSE
T ss_pred CCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC---C--C---HHHHHHHHHHhcCCC
Confidence 23446777877765544 1222 567899999886666666665321 1 1 225667788888854
No 69
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.64 E-value=2.2e-07 Score=79.32 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=53.1
Q ss_pred CCchHHHHHHHHHH-----HhCCCcEEEecC--CC---CHHHHHHHHhHcCCCCCCEEEEEe---CChHHHHHhcCC--C
Q 015891 131 GQGLAFLDYVLQQQ-----LIGKRYLIVLDD--FE---DMEVCKHLSKVLPRGYGERLIITS---RNEKLTTEMVGE--E 195 (398)
Q Consensus 131 ~~~~~~~~~~l~~~-----l~~k~~LlVLDd--v~---~~~~~~~l~~~l~~~~gs~IIiTT---R~~~v~~~~~~~--~ 195 (398)
.+.+++++..+.+. +..++-+++||+ +. +....+.+...+.. .+..+|++| ++..++..++.. .
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-~~~~~i~~~H~~h~~~~~~~i~~r~~~ 155 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGA 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-TTSEEEEECCSSCCSHHHHHHHTCTTC
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-CCCeEEEEEccCCCchHHHHHHhcCCc
Confidence 56788888888885 889999999999 65 45555666666644 455577777 466777766554 5
Q ss_pred ceEEcCCCCC
Q 015891 196 NLHQLQPLSD 205 (398)
Q Consensus 196 ~~~~l~~L~~ 205 (398)
.++++.+.+.
T Consensus 156 ~i~~~~~~~r 165 (178)
T 1ye8_A 156 VLIELTPENR 165 (178)
T ss_dssp EEEECCTTTT
T ss_pred EEEEecCcCH
Confidence 6888887776
No 70
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.64 E-value=4.3e-07 Score=82.22 Aligned_cols=180 Identities=11% Similarity=0.140 Sum_probs=96.3
Q ss_pred CCCCcccchhhHHHHHHHHhcc--C------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 36 PPANVHGFANEELHLQKLLSNR--G------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~--~------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.-++++|.+..++.|.+++... . .....+.+.|+|++|+|||++|+.+++. ....| +.+. .+.-..
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~-~~~~~~ 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMA-GAEFVE 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEE-TTTTSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEec-hHHHHh
Confidence 3467999999888887765420 0 1134566889999999999999999886 32222 2233 221100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----------------HHHHHHHhHc
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----------------EVCKHLSKVL 170 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----------------~~~~~l~~~l 170 (398)
.............+.......+.+|+|||++.. ..+..+...+
T Consensus 78 --------------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 137 (262)
T 2qz4_A 78 --------------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM 137 (262)
T ss_dssp --------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH
T ss_pred --------------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh
Confidence 000111222333444444566899999999853 1111222222
Q ss_pred C---CCCCCEEEEEeCChHHHH-Hhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTT-EMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+..||.||....... .+. .....+.+++.+. ++...++.+.+.......... .....+++.+.|.+
T Consensus 138 ~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~-~~r~~il~~~~~~~~~~~~~~--~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 138 DGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL-QERREIFEQHLKSLKLTQSST--FYSQRLAELTPGFS 214 (262)
T ss_dssp HTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCH-HHHHHHHHHHHHHTTCCBTHH--HHHHHHHHTCTTCC
T ss_pred hCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCH-HHHHHHHHHHHHhCCCCcchh--hHHHHHHHHCCCCC
Confidence 1 123456677776543221 111 1246778877777 667777776543322222221 13456777777765
Q ss_pred h
Q 015891 244 E 244 (398)
Q Consensus 244 l 244 (398)
-
T Consensus 215 ~ 215 (262)
T 2qz4_A 215 G 215 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.63 E-value=1.6e-07 Score=85.26 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=49.8
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+.+++++..+++.+..++-+++||++. |....+.+...+. ...+..||++||+...+.. .++++.+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~---~d~i~~l 226 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS---AESIILL 226 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT---CSEEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh---CCEEEEE
Confidence 458999999999999999999999999999 4444333333332 1236799999999876542 3445544
No 72
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.62 E-value=1.2e-07 Score=94.86 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCC-cc--ccc--eEEEEe-cCC--cccHHH---------------HHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQ--FVP--RIWVCT-MSG--QKTAES---------------IVKRILKRL 119 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~--F~~--~~~v~~-v~~--~~~~~~---------------~~~~il~~l 119 (398)
-.+++|+|++|+|||||++.++.-.... .. +.. ..++.. ... .....+ ...++++.+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~ 373 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL 373 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc
Confidence 4589999999999999999998652111 10 111 111110 000 111111 123334444
Q ss_pred CCCCC-CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhc
Q 015891 120 GVDDG-TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 120 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~ 192 (398)
++... .......+++++++..++++|..++-+|+||++. |......+...+. ...|..||++||+...+..++
T Consensus 374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 44332 2233448999999999999999999999999999 4433333333332 234788999999999888764
Q ss_pred C
Q 015891 193 G 193 (398)
Q Consensus 193 ~ 193 (398)
+
T Consensus 454 D 454 (538)
T 3ozx_A 454 D 454 (538)
T ss_dssp S
T ss_pred C
Confidence 3
No 73
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.62 E-value=5.1e-07 Score=84.67 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=100.8
Q ss_pred CCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 36 PPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.-++++|.+..++.|.+++.. .......+.+.|+|++|+|||+||+++++. ....| +.+. .
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~-~----- 84 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVS-S----- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEE-H-----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEc-h-----
Confidence 346799999999999988731 012233567999999999999999999886 32222 2222 1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--- 171 (398)
..+ .... ...........+......++.+|+|||++.. .....+...+.
T Consensus 85 -~~l----~~~~----------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 85 -SDL----VSKW----------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp -HHH----HTTT----------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred -HHH----hhcc----------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 111 1000 0011222233344444567889999999832 11222222221
Q ss_pred -CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 172 -RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
...+..||.||.... +... ....+.+++.+. ++...++...+......... .....|++.+.|..-
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~R---f~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~---~~l~~la~~t~g~sg 221 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRR---FERRIYIPLPDL-AARTTMFEINVGDTPCVLTK---EDYRTLGAMTEGYSG 221 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHH---CCEEEECCCCCH-HHHHHHHHHHHTTCCCCCCH---HHHHHHHHTTTTCCH
T ss_pred ccCCceEEEEecCChhhCCHHHHcc---cCeEEEeCCCCH-HHHHHHHHHHhccCCCCCCH---HHHHHHHHHcCCCCH
Confidence 233556666776532 2232 245677766665 77888888766554332222 256778888887543
No 74
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.62 E-value=3.4e-07 Score=92.76 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCCCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 110 SIVKRILKRLGVDDGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 110 ~~~~~il~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
....++++.+++.... ......+++++++..+++.|..++-+++||++. |......+...+. ...|..||++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3456778888876532 233458999999999999999999999999999 4443333333332 234778999999
Q ss_pred ChHHHHHhcC
Q 015891 184 NEKLTTEMVG 193 (398)
Q Consensus 184 ~~~v~~~~~~ 193 (398)
+...+..+++
T Consensus 280 dl~~~~~~~d 289 (608)
T 3j16_B 280 DLSVLDYLSD 289 (608)
T ss_dssp CHHHHHHHCS
T ss_pred CHHHHHHhCC
Confidence 9988877643
No 75
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.60 E-value=1.7e-07 Score=86.87 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=49.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..|++.|..++-+||||++. |......+...+. ...+.++|++||+...+.. .++++.+
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~---aD~i~vl 261 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN---ADQILVI 261 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT---CSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc---CCEEEEE
Confidence 347999999999999999999999999999 4433333333332 1235789999999887754 3455554
No 76
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.60 E-value=2.7e-07 Score=92.31 Aligned_cols=83 Identities=8% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891 112 VKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEK 186 (398)
Q Consensus 112 ~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~ 186 (398)
...++..+++..... .....+++++++..|+++|..++-+|+||++. |......+...+. ...|..||++||+..
T Consensus 119 ~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~ 198 (538)
T 3ozx_A 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198 (538)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence 456777887765332 23348999999999999999999999999999 4433333333322 112789999999998
Q ss_pred HHHHhcCC
Q 015891 187 LTTEMVGE 194 (398)
Q Consensus 187 v~~~~~~~ 194 (398)
.+..+++.
T Consensus 199 ~~~~~~d~ 206 (538)
T 3ozx_A 199 VLDYLTDL 206 (538)
T ss_dssp HHHHHCSE
T ss_pred HHHhhCCE
Confidence 88776443
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.60 E-value=1e-06 Score=83.07 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891 44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDD 123 (398)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~ 123 (398)
++..+.+...+.. ..-...+.++|++|+|||++|+.+++. +....... ... ...... ...+...-..+.
T Consensus 8 ~~~~~~l~~~i~~---~~~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~-~~~-c~~c~~----c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQA---GRGHHALLIQALPGMGDDALIYALSRY--LLCQQPQG-HKS-CGHCRG----CQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHT---TCCCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBT-TBC-CSCSHH----HHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHc---CCcceeEEEECCCCchHHHHHHHHHHH--HhCCCCCC-CCC-CCCCHH----HHHHhcCCCCCE
Confidence 4556667776653 233567999999999999999999765 11110000 000 000000 000000000000
Q ss_pred CCCCC---cCCCchHHHHHHHHHHH-----hCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHh
Q 015891 124 GTTNS---FEGQGLAFLDYVLQQQL-----IGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEM 191 (398)
Q Consensus 124 ~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~ 191 (398)
..... ......+..+. +.+.+ .+++.++|+|+++ +.+..+.|...+.. ..++.+|++|.+. .+...+
T Consensus 77 ~~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 00000 00112222222 22222 2456899999999 44555666666643 3456777777665 344444
Q ss_pred cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhccCCC
Q 015891 192 VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVNFPSS 252 (398)
Q Consensus 192 ~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~~a~~ 252 (398)
......+++.+++. ++....+.+... .++ +.+..+++.++|.|..+..++..
T Consensus 156 ~SRc~~~~~~~~~~-~~~~~~L~~~~~-----~~~---~~~~~l~~~s~G~~r~a~~~l~~ 207 (334)
T 1a5t_A 156 RSRCRLHYLAPPPE-QYAVTWLSREVT-----MSQ---DALLAALRLSAGSPGAALALFQG 207 (334)
T ss_dssp HTTSEEEECCCCCH-HHHHHHHHHHCC-----CCH---HHHHHHHHHTTTCHHHHHHTTSS
T ss_pred hhcceeeeCCCCCH-HHHHHHHHHhcC-----CCH---HHHHHHHHHcCCCHHHHHHHhcc
Confidence 45667899999998 556666665441 111 25567889999999988776654
No 78
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.4e-07 Score=93.86 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=86.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCc-c-cc--ceEEEEe---------c--------CCcccHHHHHHHHHHHcCCC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKT-Q-FV--PRIWVCT---------M--------SGQKTAESIVKRILKRLGVD 122 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~-F~--~~~~v~~---------v--------~~~~~~~~~~~~il~~l~~~ 122 (398)
.+++|+|++|+|||||++.++.-..-.. . .. ...++.. + ............+++.+++.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 5799999999999999999976421110 0 00 0111110 0 00011123345667777776
Q ss_pred CCC-CCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC---CCCCCEEEEEeCChHHHHHhcCCC
Q 015891 123 DGT-TNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP---RGYGERLIITSRNEKLTTEMVGEE 195 (398)
Q Consensus 123 ~~~-~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~~~~~~~~ 195 (398)
... ......+++++++..++++|..++-+|+||++. |......+...+. ...|..||++||+.+.+..++ +
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a--D 536 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA--D 536 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC--S
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC--C
Confidence 532 334458999999999999999999999999999 4433333333332 234789999999998887753 4
Q ss_pred ceEEcC
Q 015891 196 NLHQLQ 201 (398)
Q Consensus 196 ~~~~l~ 201 (398)
+++.+.
T Consensus 537 rvivl~ 542 (608)
T 3j16_B 537 KVIVFE 542 (608)
T ss_dssp EEEECE
T ss_pred EEEEEe
Confidence 455443
No 79
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.58 E-value=1.1e-06 Score=82.26 Aligned_cols=178 Identities=14% Similarity=0.202 Sum_probs=101.2
Q ss_pred CCCCcccchhhHHHHHHHHhc--------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 36 PPANVHGFANEELHLQKLLSN--------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~--------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.-++++|.+..++.|.+.+.. .......+.+.|+|++|+|||+||+++++... ...| +.+. .+.-..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~-~~~l~~ 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSIS-SSDLVS 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEE-CCSSCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEE-hHHHHh
Confidence 346799999999999887642 01123457899999999999999999998620 1121 2222 221100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--- 171 (398)
. ............+......++.+|+|||++.. .....+...+.
T Consensus 85 --------------~------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 85 --------------K------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp --------------S------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred --------------h------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 0 00122223333444444567899999999843 11112222221
Q ss_pred -CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 172 -RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
...+..||.||.... +.. .....+.+++.+. ++...+++..+........+ .....|++.+.|.+-+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~r---Rf~~~i~i~~P~~-~~r~~il~~~l~~~~~~l~~---~~l~~la~~t~G~sga 217 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRR---RFEKRIYIPLPEP-HARAAMFKLHLGTTQNSLTE---ADFRELGRKTDGYSGA 217 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHH---TCCEEEECCCCCH-HHHHHHHHHHHTTCCBCCCH---HHHHHHHHTCTTCCHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHh---hcCeEEEeCCcCH-HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHcCCCCHH
Confidence 123445565665432 222 2345677866665 77788887766544332222 3567888889887543
No 80
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.57 E-value=7.8e-07 Score=82.23 Aligned_cols=176 Identities=13% Similarity=0.209 Sum_probs=98.8
Q ss_pred CCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 36 PPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.-++++|.+..++.|.+++... ........+.|+|++|+||||+|+.+++. ....| +.+. .+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNIS-AASLTS 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEE-STTTSS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEee-HHHHhh
Confidence 3467999999999999877430 01123568999999999999999999886 32222 2222 211100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhH---cC
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKV---LP 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~---l~ 171 (398)
. ............+......++.+|+|||++.. .....+... ++
T Consensus 93 --------------~------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 93 --------------K------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp --------------S------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred --------------c------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 0 00122233334444455567899999999732 111112111 22
Q ss_pred C---CCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 172 R---GYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 172 ~---~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. +.+..||.||.... +...+ ...+.+.+.+. +....++...+......... .....|++.+.|.+
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~R~---~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~---~~~~~la~~~~g~~ 225 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALRRF---TKRVYVSLPDE-QTRELLLNRLLQKQGSPLDT---EALRRLAKITDGYS 225 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHHHC---CEEEECCCCCH-HHHHHHHHHHHGGGSCCSCH---HHHHHHHHHTTTCC
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHhhC---CeEEEeCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCC
Confidence 1 13456677777542 33322 35667755554 66677776654332222222 35677888888888
Q ss_pred h
Q 015891 244 E 244 (398)
Q Consensus 244 l 244 (398)
-
T Consensus 226 ~ 226 (297)
T 3b9p_A 226 G 226 (297)
T ss_dssp H
T ss_pred H
Confidence 6
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.56 E-value=2.2e-07 Score=98.17 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=85.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCcccc-----ceEEEEecCCc-------ccH-----------HHHHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV-----PRIWVCTMSGQ-------KTA-----------ESIVKRILKRL 119 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~-----~~~~v~~v~~~-------~~~-----------~~~~~~il~~l 119 (398)
-.+++|+|++|+|||||++.+.... +. .++ ...+ +.+. .+. ......++..+
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~-i~-g~~~~~~~~~~~---v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~l 535 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQ-VD-GFPTQEECRTVY---VEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF 535 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTC-ST-TCCCTTTSCEEE---TTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cC-CCccccceeEEE---EcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHc
Confidence 4579999999999999999998421 10 111 0111 2211 111 23456678888
Q ss_pred CCCC--CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCChHHHHHhcC
Q 015891 120 GVDD--GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRNEKLTTEMVG 193 (398)
Q Consensus 120 ~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~ 193 (398)
++.. ........+++++++..|.+.+..++-+|+||++. |....+.+...+.. .|..||++||+...+..+++
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCE 613 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCS
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCC
Confidence 8742 12333458999999999999999999999999999 44444455555543 58899999999988876543
No 82
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.56 E-value=3.8e-07 Score=85.50 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=99.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
++++|.+..++.+..++.. ......+.+.|++|+|||++|+.+++. ... ..+.+. .+. .. ...+...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~-~~~-~~-~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVN-GSD-CK-IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEE-TTT-CC-HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEc-ccc-cC-HHHHHHHHH
Confidence 6799999999999999974 233467788899999999999999887 321 123333 222 11 111111111
Q ss_pred HcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCChH-HHHHhc
Q 015891 118 RLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNEK-LTTEMV 192 (398)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~~-v~~~~~ 192 (398)
.+.... .+.+++.+|++||++. .+..+.|...+. ...++++|+||.... +...+.
T Consensus 95 ~~~~~~--------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 95 NFASAA--------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp HHHHBC--------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred HHHhhc--------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 110000 0012578999999994 445555555543 234678888887643 111111
Q ss_pred CCCceEEcCCCCChhHHHH-------HHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhh
Q 015891 193 GEENLHQLQPLSDQESCWL-------IYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAV 247 (398)
Q Consensus 193 ~~~~~~~l~~L~~~e~~~~-------l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~ 247 (398)
.....+++++++. ++... .+.+.+...+...++ .+....|++.++|.+..+.
T Consensus 155 sR~~~i~~~~~~~-~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 155 SRCRVITFGQPTD-EDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHSEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred hhCcEEEeCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 1235789999987 43221 122222211222211 1366677888888776643
No 83
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=8.3e-08 Score=96.04 Aligned_cols=192 Identities=16% Similarity=0.186 Sum_probs=103.5
Q ss_pred CCcccchhhHHHHHHHHhccC-------------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC
Q 015891 38 ANVHGFANEELHLQKLLSNRG-------------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG 104 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-------------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~ 104 (398)
++++|++..++.|..++.... .....+.+.|+|++|+||||+|+.+++. .. +. .+.+. .+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~~-~i~in-~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--YD-ILEQN-ASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--CE-EEEEC-TTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEe-CCC
Confidence 679999999999999986410 0123578999999999999999999987 31 21 22333 333
Q ss_pred cccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-----HHHHHHHhHcCCCCCCEEE
Q 015891 105 QKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-----EVCKHLSKVLPRGYGERLI 179 (398)
Q Consensus 105 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-----~~~~~l~~~l~~~~gs~II 179 (398)
.... ..+...+........ .... ..... . ......++.+|++||++.. ..+..+...+.. .+..||
T Consensus 113 ~~~~-~~~~~~i~~~~~~~~-~~~~-~~~~~---~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~~~~iI 183 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNMS-VVGY-FKHNE---E--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-TSTPLI 183 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBCC-STTT-TTC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-CSSCEE
T ss_pred cchH-HHHHHHHHHHhcccc-HHHH-Hhhhh---h--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-cCCCEE
Confidence 3222 222222222111100 0000 00000 0 0011246789999999832 222334333332 234466
Q ss_pred EEeCChH--HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 180 ITSRNEK--LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 180 iTTR~~~--v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+++.+.. ....+......+.+.+++. ++...++.+.+.......++ +....|++.++|.+..+..
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~-~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDA-NSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCH-HHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHH
Confidence 6655432 1122334456789999988 55666665533221222222 2567788889997665443
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.56 E-value=3.8e-08 Score=83.57 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=71.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--cccceEEEEecCCcccHH---HHHHHH---HHHcCCCCCCCCCcCCCc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--QFVPRIWVCTMSGQKTAE---SIVKRI---LKRLGVDDGTTNSFEGQG 133 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~~v~~v~~~~~~~---~~~~~i---l~~l~~~~~~~~~~~~~~ 133 (398)
...+++|+|++|+|||||++.++....+.. .+...++-. ........ ..+... ....+...........+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 86 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDD-ENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQES 86 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSS-TTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCc-ccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHH
Confidence 457899999999999999997543210000 000000000 00001011 111111 112222211111112366
Q ss_pred hHHHHHHHHHHHhCCCcEEEecCCCCH---H----------------HHHHHHhHcC--CCCCCEEEEEeCChHHHHHh
Q 015891 134 LAFLDYVLQQQLIGKRYLIVLDDFEDM---E----------------VCKHLSKVLP--RGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 134 ~~~~~~~l~~~l~~k~~LlVLDdv~~~---~----------------~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~ 191 (398)
+++++..+++.+..++.+++||++.+. . ....+...+. ...|..+|++||+.+.+..+
T Consensus 87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 778888999999999999999999843 2 3345555554 23488899999998877654
No 85
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.56 E-value=1.6e-07 Score=95.38 Aligned_cols=131 Identities=14% Similarity=0.182 Sum_probs=84.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC--CCc----------cccc----------------eEEEE-ecCCc-----cc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKT----------QFVP----------------RIWVC-TMSGQ-----KT 107 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~----------~F~~----------------~~~v~-~v~~~-----~~ 107 (398)
.-.+++|+|++|+|||||++.+..-.. ... .|.. ..++. ++... .+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t 195 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGK 195 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSB
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhcccc
Confidence 456899999999999999999976411 000 0110 01110 00000 01
Q ss_pred HH---------HHHHHHHHHcCCCCCCC-CCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--C
Q 015891 108 AE---------SIVKRILKRLGVDDGTT-NSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--R 172 (398)
Q Consensus 108 ~~---------~~~~~il~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~ 172 (398)
.. ....+++..+++..... .....+++++++..|++.|..++-+|+||++. |......+...+. .
T Consensus 196 v~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 196 VRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp HHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 11 12456788888765322 23348999999999999999999999999999 4433333333322 1
Q ss_pred CCCCEEEEEeCChHHHHHhc
Q 015891 173 GYGERLIITSRNEKLTTEMV 192 (398)
Q Consensus 173 ~~gs~IIiTTR~~~v~~~~~ 192 (398)
..|..||++||+...+..++
T Consensus 276 ~~g~tvIivsHdl~~~~~~a 295 (607)
T 3bk7_A 276 NEGKAVLVVEHDLAVLDYLS 295 (607)
T ss_dssp HTTCEEEEECSCHHHHHHHC
T ss_pred hcCCEEEEEecChHHHHhhC
Confidence 24789999999998887654
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.55 E-value=1.6e-07 Score=90.06 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=79.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-----------------ecCCc----------------cc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-----------------TMSGQ----------------KT 107 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-----------------~v~~~----------------~~ 107 (398)
..-.+++|+|++|+|||||++.++.-. . ..+.+++. ++.+. ..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~--~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~ 120 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL--N--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS--E--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC--C--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhcccc
Confidence 345689999999999999999997631 1 11111111 01111 01
Q ss_pred HHHHHHHHHHHcCCCCC-CCCCc-----------CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-
Q 015891 108 AESIVKRILKRLGVDDG-TTNSF-----------EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~-~~~~~-----------~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~- 171 (398)
......++++.+++... ...+. ..+++++++..+++.|..++-+|+||++. |......+...+.
T Consensus 121 ~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 12334566666665431 11111 27999999999999999999999999998 4444444444443
Q ss_pred CCCCCEEEEEeCChHHHH
Q 015891 172 RGYGERLIITSRNEKLTT 189 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v~~ 189 (398)
...+..+|++||+.....
T Consensus 201 ~~~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 201 AFADCTVILCEARIEAML 218 (390)
T ss_dssp TTTTSCEEEECSSSGGGT
T ss_pred HhCCCEEEEEEcCHHHHH
Confidence 234788999999976443
No 87
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=7e-07 Score=84.36 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=100.9
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccc-eEEEEecCCcccHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVP-RIWVCTMSGQKTAESIVKRI 115 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~-~~~v~~v~~~~~~~~~~~~i 115 (398)
..++|.+..++.|...+.. ++...+.++|++|+||||+|+.+++. +.. .+.. ...+. .+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~----g~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~-~~~~~~~------- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDE----GKLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELN-ASDDRGI------- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEEC-TTSCCSH-------
T ss_pred HHhcCcHHHHHHHHHHHhc----CCCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEc-CcccccH-------
Confidence 4578999999999988865 23333899999999999999999876 211 1111 11122 2211111
Q ss_pred HHHcCCCCCCCCCcCCCchHHHHHHHHHHH------hCCCcEEEecCCC--CHHHHHHHHhHcC-CCCCCEEEEEeCChH
Q 015891 116 LKRLGVDDGTTNSFEGQGLAFLDYVLQQQL------IGKRYLIVLDDFE--DMEVCKHLSKVLP-RGYGERLIITSRNEK 186 (398)
Q Consensus 116 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVLDdv~--~~~~~~~l~~~l~-~~~gs~IIiTTR~~~ 186 (398)
...+..+.... ...+.++|+|+++ ..+..+.|...+. ....+++|++|....
T Consensus 91 -------------------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 91 -------------------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp -------------------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred -------------------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 11111122111 1236799999998 3444455555553 234566777765432
Q ss_pred -HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 187 -LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 187 -v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
+...+......+.+.+++. ++....+.+.+.......++ +..+.|++.++|.+..+..
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~-~~~~~~l~~~~~~~~~~i~~---~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQ-EAIERRIANVLVHEKLKLSP---NAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCH-HHHHHHHHHHHHTTTCCBCH---HHHHHHHHHHTTCHHHHHH
T ss_pred ccchhHHhhceeEeccCCCH-HHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCCHHHHHH
Confidence 2222334455789999998 55666666544332322333 2556778888888875543
No 88
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.55 E-value=1.4e-06 Score=80.92 Aligned_cols=179 Identities=13% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
.-++++|.+..++.|.+++... ..-...+.+.|+|++|+|||+||+++++. .... ++. +.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~-v~--- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FIS-IK--- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEE-EC---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEE-EE---
Confidence 3467999999999998877530 01234568999999999999999999987 3222 222 22
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHH----------------HHHHHHhHc
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDME----------------VCKHLSKVL 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~----------------~~~~l~~~l 170 (398)
...+...+ ++.. .......+.......+.+|+|||++... ....+...+
T Consensus 82 -~~~l~~~~---~g~~-----------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 82 -GPELLTMW---FGES-----------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp -HHHHHHHH---HTTC-----------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred -hHHHHhhh---cCch-----------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 12222222 1211 1122344555555678999999998431 112222222
Q ss_pred C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+..||.||...+.... +. .....+.+++.+. ++...+++..+.......+. ....+++.+.|.|
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~-~~r~~il~~~l~~~~~~~~~----~~~~la~~~~g~s 221 (301)
T 3cf0_A 147 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFS 221 (301)
T ss_dssp HSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBCSSC----CHHHHHHTCSSCC
T ss_pred hcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH-HHHHHHHHHHHccCCCCccc----hHHHHHHHcCCCC
Confidence 1 2335677778776543221 11 2245788877776 66777777765443221111 2345566677666
Q ss_pred hh
Q 015891 244 ED 245 (398)
Q Consensus 244 la 245 (398)
-+
T Consensus 222 g~ 223 (301)
T 3cf0_A 222 GA 223 (301)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 89
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.53 E-value=1e-06 Score=84.78 Aligned_cols=178 Identities=13% Similarity=0.183 Sum_probs=96.7
Q ss_pred CCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 37 PANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
-++++|.+..++.|.+++... ......+.+.|+|++|+|||+||+.+++. ....| +.+. .+.-..
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~-~~~l~~- 186 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNIS-AASLTS- 186 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEEC-SCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEee-HHHhhc-
Confidence 467999999999999887320 01123568999999999999999999886 32222 2222 211110
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---C
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---R 172 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---~ 172 (398)
.. . ..........+.......+.+|+|||++.. .....+...+. .
T Consensus 187 -~~-------~-----------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 -KY-------V-----------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred -cc-------c-----------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 00 0 011122233333344556789999999732 11111111111 1
Q ss_pred --CCCCEEEEEeCChH-HHHHhc-CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 173 --GYGERLIITSRNEK-LTTEMV-GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 173 --~~gs~IIiTTR~~~-v~~~~~-~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
.....||.||.... +-..+. .....+.+.+.+. ++...++...+......... +....|++.+.|..-
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~-~~r~~il~~~~~~~~~~l~~---~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE-ETRLLLLKNLLCKQGSPLTQ---KELAQLARMTDGYSG 319 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHTTSCCCSCH---HHHHHHHHHTTTCCH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH-HHHHHHHHHHHHhcCCCCCH---HHHHHHHHHcCCCCH
Confidence 22345566665432 111111 2234677877666 66777777765443333222 256778888888665
No 90
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.53 E-value=1.1e-06 Score=83.66 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=100.8
Q ss_pred CCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 37 PANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
-++++|.+..++.|.+.+... ......+.+.|+|++|+|||+||+++++. ....| +.+. .
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~-~------ 117 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVS-S------ 117 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEE-H------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEee-H------
Confidence 367999999999999877320 11223456899999999999999999987 32222 1222 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC----
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---- 171 (398)
..+ .... ...........+......++.+|+|||++.. .....+...+.
T Consensus 118 ~~l----~~~~----------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 118 SDL----VSKW----------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp HHH----HSCC-------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred HHH----hhhh----------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 111 1100 0011222333344444567899999999842 11222222221
Q ss_pred CCCCCEEEEEeCChH-----HHHHhcCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch-h
Q 015891 172 RGYGERLIITSRNEK-----LTTEMVGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE-D 245 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~-----v~~~~~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl-a 245 (398)
...+..||.||.... +.. .....+.+.+.+. ++...++...+........ ......|++.+.|..- .
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~r---Rf~~~i~i~~P~~-~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRR---RFERRIYIPLPDL-AARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHH---TCCEEEECCCCCH-HHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHc---ccCEEEEeCCcCH-HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHH
Confidence 123455666776442 222 2346777876666 6677888776654332222 2256778888888543 4
Q ss_pred hhc
Q 015891 246 AVN 248 (398)
Q Consensus 246 i~~ 248 (398)
|..
T Consensus 257 l~~ 259 (355)
T 2qp9_X 257 IAV 259 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.49 E-value=6.5e-07 Score=76.37 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcccc-ceEEEEecCCcccHHHHHHHHHHHcCC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFV-PRIWVCTMSGQKTAESIVKRILKRLGV 121 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~~v~~v~~~~~~~~~~~~il~~l~~ 121 (398)
....++.+.+++... .......++|+|++|+|||||++.+++. ...... .+.++. ...+...+...+..
T Consensus 19 ~~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~--~~~~~g~~~~~~~-------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKA--IYEKKGIRGYFFD-------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHH--HHHHSCCCCCEEE-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHH--HHHHcCCeEEEEE-------HHHHHHHHHHHhcC
Confidence 444555555555431 2234578999999999999999999876 221111 123333 23333333332211
Q ss_pred CCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC----HHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 122 DDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED----MEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~----~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
.. . .. +...+ .++.+|||||++. ....+.+...+. ...+..+|+||+..
T Consensus 89 ~~--------~--~~----~~~~~-~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GK--------D--TK----FLKTV-LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TC--------C--SH----HHHHH-HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ch--------H--HH----HHHHh-cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 10 0 01 11112 2578999999982 233334433332 23578899999754
No 92
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.49 E-value=7.3e-07 Score=84.88 Aligned_cols=178 Identities=10% Similarity=0.131 Sum_probs=97.0
Q ss_pred CCCcccchhhHHHHHHHHhcc---C-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 37 PANVHGFANEELHLQKLLSNR---G-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
-++++|.+..++.|.+.+... . .....+.+.|+|++|+|||+||+.+++. ....| +.+. .+.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~i~-~~~l~~- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGATF---FSIS-ASSLTS- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCEE---EEEE-GGGGCC-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCeE---EEEe-hHHhhc-
Confidence 367999999999999887420 0 1134668999999999999999999886 32222 2333 221100
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC----
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP---- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~---- 171 (398)
. ............+......++.+|+|||++.. .....+...+.
T Consensus 156 -------------~------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 216 (357)
T 3d8b_A 156 -------------K------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT 216 (357)
T ss_dssp -------------S------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC---
T ss_pred -------------c------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc
Confidence 0 00011122223333333467899999999532 11122222221
Q ss_pred -CCCCCEEEEEeCChH-HHHHh-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 172 -RGYGERLIITSRNEK-LTTEM-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 172 -~~~gs~IIiTTR~~~-v~~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
...+..||.||.... +...+ ......+.+...+. ++...++...+........ .+....|++.+.|..-
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~-~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~ 288 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA-SARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSG 288 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH-HHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCH
Confidence 122445666675432 11111 12244677766665 6677777665433222222 2366778888888543
No 93
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.45 E-value=9.4e-07 Score=89.68 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=50.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+..++-+++|||+. |....+.+...+. ...|.++|++||+.+.... .++++.+
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~---~d~i~~l 551 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ---ADEILVV 551 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh---CCEEEEE
Confidence 348999999999999999999999999999 4444444444443 2247889999999877654 3445544
No 94
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.44 E-value=3.1e-06 Score=82.92 Aligned_cols=180 Identities=15% Similarity=0.207 Sum_probs=99.6
Q ss_pred CCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 36 PPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
.-++++|.+..++.|.+.+... ......+.+.|+|++|+|||+||+++++. .. ...++. ++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~~----~~~~~~-v~~~~- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN----NSTFFS-ISSSD- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--CC----SSEEEE-ECCC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--cC----CCCEEE-EeHHH-
Confidence 3467999999999999877320 01234578999999999999999999987 31 112222 22211
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcCC--
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLPR-- 172 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~-- 172 (398)
+.... .+.. ... ....+......++.+|+|||++.. .....+...+..
T Consensus 204 ---l~~~~---~g~~--------~~~---~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 ---LVSKW---LGES--------EKL---VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp --------------C--------CCT---HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred ---HHhhh---cchH--------HHH---HHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 00000 1110 011 223333344567899999999843 222223323321
Q ss_pred --CCCCEEEEEeCChHHH-HHh-cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 173 --GYGERLIITSRNEKLT-TEM-VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 173 --~~gs~IIiTTR~~~v~-~~~-~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
..+..||.||...... ..+ ......+.+.+.+. ++...++...+........+ .....|++.+.|.+-
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~-~~r~~il~~~l~~~~~~l~~---~~l~~la~~t~G~sg 338 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA-HARAAMFRLHLGSTQNSLTE---ADFQELGRKTDGYSG 338 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH-HHHHHHHHHHHTTSCEECCH---HHHHHHHHHTTTCCH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH-HHHHHHHHHHHhcCCCCCCH---HHHHHHHHHcCCCCH
Confidence 2355677677654221 111 12245677755554 77778887766543322222 356778888888654
No 95
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.43 E-value=5.1e-07 Score=74.27 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+++|++..+.++.+.+... ......|.|+|++|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHH--hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999988652 233455889999999999999999886
No 96
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.9e-07 Score=86.02 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=102.2
Q ss_pred CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
-+++.|.++.++.|.+.+... .+-...+-+.++||+|+|||+||+++++. ....| +.+. .+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~-~~~l~~ 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVN-GSEFVH 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEE-GGGTCC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEe-cchhhc
Confidence 367899999999888866430 13345678999999999999999999987 33332 2222 221100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhH--
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKV-- 169 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~-- 169 (398)
..-......++..+..+-...++++++|+++.. . ....|...
T Consensus 245 --------------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 245 --------------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp --------------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred --------------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 000122233344455555678999999999721 1 11122212
Q ss_pred -cCCCCCCEEEEEeCChHHHHH-h-c--CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 170 -LPRGYGERLIITSRNEKLTTE-M-V--GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 170 -l~~~~gs~IIiTTR~~~v~~~-~-~--~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
+....+..||.||...+.... + . ..+..+++..++..++...+|+..........+- ....|++.+.|..-
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~----dl~~lA~~t~G~sg 380 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA----DLDSLIIRNDSLSG 380 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC----CHHHHHHHTTTCCH
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc----CHHHHHHHCCCCCH
Confidence 223345567777765432111 1 1 1245677866877676677776654332211111 35677888888764
Q ss_pred h
Q 015891 245 D 245 (398)
Q Consensus 245 a 245 (398)
|
T Consensus 381 a 381 (428)
T 4b4t_K 381 A 381 (428)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=8.6e-07 Score=84.71 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=102.1
Q ss_pred CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
+++.|.++.+++|.+.+.. ..+-..++-|.++||+|+|||.||+++++. ....| +.+. .+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~-~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVS-GAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEE-GGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEE-hHHhhc-
Confidence 6788999999998876543 012345678999999999999999999987 33333 2222 211100
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHc--
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVL-- 170 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l-- 170 (398)
..-......++..+..+-...+++|++|+++.. .. ...+...+
T Consensus 221 -------------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 221 -------------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp -------------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred -------------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 000122233344455555678999999999832 11 11222222
Q ss_pred -CCCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 171 -PRGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 171 -~~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
....+..||.||...+.... + ...+..++++..+. ++...+|+..........+- ....|++.+.|..-|
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~-~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV-AARAEILRIHSRKMNLTRGI----NLRKVAEKMNGCSGA 356 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCH-HHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSCCHH
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCH-HHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCCCHH
Confidence 22334566777765432211 1 13377888865554 77788887655443221111 356778888887643
No 98
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=1.6e-07 Score=80.08 Aligned_cols=46 Identities=26% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 37 PANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++||+.+++.+.+.+.. .....+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999854 44567799999999999999999775
No 99
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.36 E-value=1.2e-06 Score=92.67 Aligned_cols=87 Identities=23% Similarity=0.235 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCCC---CCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcCCCCCCEEEEEeCC
Q 015891 111 IVKRILKRLGVDDG---TTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLPRGYGERLIITSRN 184 (398)
Q Consensus 111 ~~~~il~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~~~~gs~IIiTTR~ 184 (398)
...+++..+++... .......+++++++..|.+.+..++-+||||++. |......+...+..- +..||++||+
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD 957 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHS 957 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSC
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECC
Confidence 35667788887632 2233458999999999999999999999999999 555555565555422 4689999999
Q ss_pred hHHHHHhcCCCceEEc
Q 015891 185 EKLTTEMVGEENLHQL 200 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l 200 (398)
.+.+..++ ++++.+
T Consensus 958 ~e~v~~l~--DrVivL 971 (986)
T 2iw3_A 958 AEFTKNLT--EEVWAV 971 (986)
T ss_dssp HHHHTTTC--CEEECC
T ss_pred HHHHHHhC--CEEEEE
Confidence 98876643 445544
No 100
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.6e-06 Score=84.08 Aligned_cols=178 Identities=14% Similarity=0.217 Sum_probs=101.9
Q ss_pred CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
-+++.|.++.++.|.+.+... .+-..++-|.++||+|+|||+||+++++. ....| +.+. .+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~-~s~l~s 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSP-ASGIVD 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGTCC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-hhhhcc
Confidence 367889999999888866430 12345788999999999999999999987 33332 2222 221100
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHc-
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVL- 170 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l- 170 (398)
..........+..+..+-...+++|++|+++.. .. +..+...+
T Consensus 254 --------------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 254 --------------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp --------------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 000122233344455555678999999999821 11 11222222
Q ss_pred --CCCCCCEEEEEeCChHHHHHh-c--C-CCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 171 --PRGYGERLIITSRNEKLTTEM-V--G-EENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 171 --~~~~gs~IIiTTR~~~v~~~~-~--~-~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
....+..||.||...+..... . + .+..++++ ++..++...+|+..+.......+- ....|++.+.|..-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~-lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~sG 388 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP-LPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGFNG 388 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC-CCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSCCH
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecC-CcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCCCH
Confidence 223456788888765433221 1 1 24567775 455477777777655432211111 34667788888764
Q ss_pred h
Q 015891 245 D 245 (398)
Q Consensus 245 a 245 (398)
|
T Consensus 389 A 389 (437)
T 4b4t_L 389 A 389 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 101
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.33 E-value=1.7e-06 Score=85.37 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=79.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-----ccceEEEEecCCcccHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-----FVPRIWVCTMSGQKTAESIV 112 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~~v~~v~~~~~~~~~~ 112 (398)
+++|||+.+++.+...|.. ....-+.|+|++|+|||++|+.+++. +... +...-++. +...
T Consensus 180 d~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~-l~~~------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMT-LDMG------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEEC-C----------
T ss_pred CCccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE-eeCC-------
Confidence 5699999999999999965 33445789999999999999999876 2111 11111222 1111
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHH----
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLT---- 188 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~---- 188 (398)
....| .........+...-..++.+|++| ...+....|...+. ....++|.+|......
T Consensus 246 ---~~~~g-----------~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 ---TKYRG-----------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA-RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT-SSSCEEEEECCTTTTHHHHT
T ss_pred ---ccccc-----------hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc-CCCEEEEecCCHHHHHHHhh
Confidence 00000 000112233333444678899999 33333333443333 2245666666544311
Q ss_pred --HHhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891 189 --TEMVGEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 189 --~~~~~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
..+......+.+++.+. ++...++....
T Consensus 309 ~~~al~~Rf~~i~v~~p~~-e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSV-DESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCH-HHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCH-HHHHHHHHHHH
Confidence 11112234688988887 66777777644
No 102
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.33 E-value=2e-06 Score=87.24 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=50.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+..++-+++|||+. |......+...+. ...+.++|++||+.+.+.. .++++.+
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~---~d~i~vl 550 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL---ADKILVL 550 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTT---SSEEEEE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHh---CCEEEEE
Confidence 458999999999999999999999999999 4444444443332 2347899999999877653 3555555
No 103
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.3e-06 Score=82.97 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=100.4
Q ss_pred CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
+++.|.++.++.|.+.+.. .-+-...+-|.++||+|+|||+||+++++. ....| +.+. .+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs-~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVI-GSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEE-hHHhhc-
Confidence 6789999999999876432 113346788999999999999999999987 33333 2222 111000
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------H---HHHHHHhHcC-
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------E---VCKHLSKVLP- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~---~~~~l~~~l~- 171 (398)
. .-......++..+..+-...+++|++|+++.. . ....+...+.
T Consensus 282 -------------k------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 282 -------------K------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp -------------C------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred -------------c------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 0 00122233344455555678999999999822 1 1111111221
Q ss_pred --CCCCCEEEEEeCChHHHHH-h---cCCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 172 --RGYGERLIITSRNEKLTTE-M---VGEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~-~---~~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
...+..||.||...+.+.. + ...+..++++..+. ++...+|+..+.......+- ....|++.+.|..-
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~-~~R~~Ilk~~l~~~~l~~dv----dl~~LA~~T~GfSG 416 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL-EGRANIFRIHSKSMSVERGI----RWELISRLCPNSTG 416 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCH-HHHHHHHHHHHTTSCBCSSC----CHHHHHHHCCSCCH
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCH-HHHHHHHHHHhcCCCCCCCC----CHHHHHHHCCCCCH
Confidence 2234456777764432211 1 12367788855444 77788887665443222111 34667788888754
No 104
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.33 E-value=3.5e-06 Score=85.73 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
...+++++++..+++.+..++-+++|||+. |....+.+...+. ...+.++|++||+.+....
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~ 547 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc
Confidence 458999999999999999999999999999 4444444444433 1236789999999887654
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.32 E-value=4.4e-06 Score=75.48 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=94.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcc--------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 35 KPPANVHGFANEELHLQKLLSNR--------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~--------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..-++++|.+..++.+.+++..- ......+-+.|+|++|+||||||+.+++. ....| +.+. .+.-.
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~-~~~~~ 82 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTIS-GSDFV 82 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEEC-SCSST
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEe-HHHHH
Confidence 34467999998888877654320 00122446899999999999999999876 22222 2222 11100
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l 170 (398)
. . ............+.......+.++++||++.. .....+...+
T Consensus 83 ~----------------~----~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 83 E----------------M----FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142 (257)
T ss_dssp T----------------S----CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred H----------------H----hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 0 0 00112223334444444556789999998521 1122222222
Q ss_pred C---CCCCCEEEEEeCChHHH-HHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCC-C
Q 015891 171 P---RGYGERLIITSRNEKLT-TEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQG-Q 242 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~G-l 242 (398)
. ...+..||.||...+.. ..+. .....+.+++.+. ++...++.......... +.. ....++..+.| .
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~-~~r~~il~~~~~~~~l~--~~~--~~~~la~~~~G~~ 217 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV-RGREQILKVHMRRVPLA--PDI--DAAIIARGTPGFS 217 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBC--TTC--CHHHHHHTCTTCC
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCH-HHHHHHHHHHHhcCCCC--ccc--cHHHHHHHcCCCC
Confidence 1 23345677777655322 1111 1245677766555 55666666654332211 111 23446666777 5
Q ss_pred chhhhc
Q 015891 243 NEDAVN 248 (398)
Q Consensus 243 Plai~~ 248 (398)
+-.|..
T Consensus 218 ~~dl~~ 223 (257)
T 1lv7_A 218 GADLAN 223 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 106
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.30 E-value=2e-06 Score=88.79 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=56.1
Q ss_pred HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCc--EEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRY--LIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~--LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
++..+++... .......+++++++..|+++|..++- +|+||++. |......+...+. ...|.+||++||+.
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3666776542 23344589999999999999999877 99999998 3322222222221 23478999999999
Q ss_pred HHHHHhcCCCceEEc
Q 015891 186 KLTTEMVGEENLHQL 200 (398)
Q Consensus 186 ~v~~~~~~~~~~~~l 200 (398)
+++.. .++++.+
T Consensus 265 ~~~~~---~d~ii~l 276 (670)
T 3ux8_A 265 DTMLA---ADYLIDI 276 (670)
T ss_dssp HHHHH---CSEEEEE
T ss_pred HHHhh---CCEEEEe
Confidence 87654 3455555
No 107
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.29 E-value=2.6e-06 Score=86.37 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=50.2
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++.+..++-+++|||+. |....+.+...+. ...|.++|++||+.+.... .++++.+
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~---~d~i~~l 551 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ---ADEIVVV 551 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT---CSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh---CCEEEEE
Confidence 358999999999999999999999999999 4444444443332 1237889999999875543 3555555
No 108
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.2e-06 Score=84.79 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=98.2
Q ss_pred CCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccH
Q 015891 38 ANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTA 108 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~ 108 (398)
+++.|-++.++.|.+.+.. ..+-..++-|.++||+|+|||+||+++++. ....| +.+. .+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~-~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLA-APQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEE-GGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEe-hhhhhh-
Confidence 6789999999998876432 012345788999999999999999999987 33332 2222 211000
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhHcC-
Q 015891 109 ESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKVLP- 171 (398)
Q Consensus 109 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~l~- 171 (398)
. .-......++..+..+-...+++|++|+++.. .. ...+...+.
T Consensus 254 -------------~------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 254 -------------M------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp -------------S------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred -------------c------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 0 00112222333444444567999999999722 11 112222222
Q ss_pred --CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 172 --RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
...+..||.||...+.... +. ..+..++++..+. ++...+|+..+.......+- ....|++.+.|..-|
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~-~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~sGA 389 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE-DSRAQILQIHSRKMTTDDDI----NWQELARSTDEFNGA 389 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCH-HHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSCCHH
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCH-HHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCCHH
Confidence 2234466667766543322 11 1255778855444 77777776544322111111 346678888887643
No 109
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.27 E-value=1.4e-06 Score=71.42 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.++|++..++++.+.+... ......|.|+|++|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~--~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAA--AKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHH--HTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHH--hCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 35799999999988887652 123345889999999999999999886
No 110
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.27 E-value=1.3e-06 Score=75.97 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=38.5
Q ss_pred CCcccch----hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE
Q 015891 38 ANVHGFA----NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC 100 (398)
Q Consensus 38 ~~~vGR~----~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~ 100 (398)
++|++.+ ..++.+..++...........+.|+|++|+|||+||+.+++. .......++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 5566544 344556666654211112278999999999999999999886 333333445555
No 111
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.26 E-value=1.5e-06 Score=88.08 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=50.1
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+++++++..+++.+..++-+++|||+. |......+...+. ...+.++|++||+.+.... .++++.++
T Consensus 477 ~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~---~d~i~~l~ 549 (578)
T 4a82_A 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH---ADKIVVIE 549 (578)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT---CSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc---CCEEEEEE
Confidence 47999999999999999999999999998 4444444443332 2346789999999876543 35555553
No 112
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.25 E-value=2.3e-06 Score=87.05 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
..+++++++..+++.+..++-+++|||+. |......+...+. ...|.++|++||+.+....+ ++++.++
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~---d~i~~l~ 563 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA---DLIIVLR 563 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHC---SEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC---CEEEEEE
Confidence 47899999999999999999999999999 4433333333332 12478999999998877653 4555553
No 113
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.1e-06 Score=81.21 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
-+++.|.++.++.|.+.+.. ...-...+-|.++||+|+|||.||+++++. ....|- .+. .+.-.+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~fi---~v~-~s~l~s 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATFL---RIV-GSELIQ 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEEE---EEE-SGGGCC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCEE---EEE-HHHhhh
Confidence 36788999999988886543 012345688999999999999999999987 333331 222 111000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HH---HHHHHhH--
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EV---CKHLSKV-- 169 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~---~~~l~~~-- 169 (398)
. .-......++..+..+-...+++|++|+++.. .. ...+...
T Consensus 255 --------------k------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 255 --------------K------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp --------------S------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred --------------c------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 0 00122223334444455667999999998821 11 1111111
Q ss_pred -cCCCCCCEEEEEeCChHHHHHh-c---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCch
Q 015891 170 -LPRGYGERLIITSRNEKLTTEM-V---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNE 244 (398)
Q Consensus 170 -l~~~~gs~IIiTTR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPl 244 (398)
+....+..||.||...+..... . ..+..++++ +++.++...+|+..+.......+- ....|++.+.|..-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~-lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~GfSG 389 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE-NPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDLSG 389 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC-CCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSCCH
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC-CcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCCH
Confidence 2223455677788665543321 1 114456774 455477778887665443222111 35667788888764
Q ss_pred h
Q 015891 245 D 245 (398)
Q Consensus 245 a 245 (398)
|
T Consensus 390 A 390 (437)
T 4b4t_I 390 A 390 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 114
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.23 E-value=6.5e-06 Score=85.59 Aligned_cols=179 Identities=11% Similarity=0.162 Sum_probs=102.4
Q ss_pred CCCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 36 PPANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
.-+++.|.++.+++|.+++.. ...-..++-|.++|++|+|||+||+++++. ...+| +.+. .+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~-~~--- 272 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-GP--- 272 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEE-HH---
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEE-hH---
Confidence 346788999999998887542 112245778999999999999999999998 43332 2232 11
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHc---
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVL--- 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l--- 170 (398)
++... ........++..+..+....+.+|+|||++.. .....|...+
T Consensus 273 -------~l~sk----------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 273 -------EIMSK----------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (806)
T ss_dssp -------HHHSS----------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC
T ss_pred -------Hhhcc----------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc
Confidence 11110 00122333445555555678999999999832 1122222222
Q ss_pred CCCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchh
Q 015891 171 PRGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNED 245 (398)
Q Consensus 171 ~~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPla 245 (398)
....+..||.||...+.... +. .-.+.++++..+. ++...+++..........+. ....|++++.|..-+
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~-~~R~~IL~~~l~~~~~~~dv----dl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHTKNMKLADDV----DLEQVANETHGHVGA 409 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH-HHHHHHHHHTCSSSEECTTC----CHHHHHHHCCSCCHH
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH-HHHHHHHHHHhcCCCCCccc----CHHHHHHhcCCCCHH
Confidence 22234556667765432221 11 1255788865554 66777777655432211111 356677888877643
No 115
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.22 E-value=1.3e-05 Score=78.66 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=100.0
Q ss_pred CCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 35 KPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
..-++++|.++.++++.+++..-. .....+-+.|+|++|+|||+||+.+++. ....| +.+. .+.-.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is-~~~~~ 86 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHIS-GSDFV 86 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEE-GGGTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCC-HHHHH
Confidence 344679999998888877654310 1122345889999999999999999886 22222 2222 22110
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l 170 (398)
.. .........+..+.......+.+|+|||++.. .....+...+
T Consensus 87 ~~--------------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 87 EL--------------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp TC--------------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred HH--------------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 00 00122344455666666778999999999631 1122222222
Q ss_pred C---CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+..||.||+..+.... +. .....+.+++.+. ++...+++......... +.. ....|++.+.|..
T Consensus 147 d~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~-~~R~~Il~~~~~~~~l~--~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM-LGRKKILEIHTRNKPLA--EDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHHTTSCBC--TTC--CHHHHHHTCTTCC
T ss_pred hccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCH-HHHHHHHHHHHHhCCCc--chh--hHHHHHHhcCCCc
Confidence 1 2245677888877654321 11 1244778876665 55666666544432211 111 2345777788877
No 116
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.22 E-value=1e-05 Score=75.08 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhcc-----CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNR-----GTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~-----~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|.+..++.+...+... ........+.|+|++|+|||++|+.+++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 45889999999998888751 01112358999999999999999999876
No 117
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=1.7e-05 Score=73.49 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=86.5
Q ss_pred cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC-CCCccccceEEEEecCC-cccHHHHHHHHHHHc
Q 015891 42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP-DVKTQFVPRIWVCTMSG-QKTAESIVKRILKRL 119 (398)
Q Consensus 42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~l 119 (398)
|-++.++.|...+.. ++...+.++|++|+||||+|+.+.+.. ...........+. ... ..... .++++.+.+
T Consensus 1 g~~~~~~~L~~~i~~----~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~~~~~id-~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEGENIGID-DIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHT----CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSSSCBCHH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHC----CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCcCCCCHH-HHHHHHHHH
Confidence 445667778888865 236789999999999999999997630 0111122334443 222 22221 223333333
Q ss_pred CCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCC-CCCCEEEEEeCCh-HHHHHhcCCC
Q 015891 120 GVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPR-GYGERLIITSRNE-KLTTEMVGEE 195 (398)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~-~~gs~IIiTTR~~-~v~~~~~~~~ 195 (398)
...+ ..+++-++|+|+++ +....+.|...+.. .+.+.+|++|.+. .+...+...
T Consensus 75 ~~~p---------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR- 132 (305)
T 2gno_A 75 NYSP---------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR- 132 (305)
T ss_dssp TSCC---------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-
T ss_pred hhcc---------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-
Confidence 2111 01346799999999 45555666666642 3466777776554 454555444
Q ss_pred ceEEcCCCCChhHHHHHHHhhh
Q 015891 196 NLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 196 ~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
.+++.+++. ++....+.+.+
T Consensus 133 -~~~f~~l~~-~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVP-KEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCC-HHHHHHHHHHH
T ss_pred -eEeCCCCCH-HHHHHHHHHHh
Confidence 899999999 66666666654
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.19 E-value=8.4e-07 Score=73.40 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++|+|++|+|||||++.+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876
No 119
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.18 E-value=6.5e-06 Score=81.41 Aligned_cols=176 Identities=12% Similarity=0.173 Sum_probs=99.1
Q ss_pred CCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
..+++|.+..++.|.+++... ........+.|+|++|+|||+||+++++. ....| +.+. .
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn-~----- 271 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-G----- 271 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEE-H-----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEE-c-----
Confidence 356899999999999887541 01244567999999999999999999886 32222 2222 1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC---
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP--- 171 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~--- 171 (398)
.. +...+ ...........+......++.+|+|||++.. .....|...+.
T Consensus 272 -~~----l~~~~----------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 272 -PE----IMSKL----------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp -HH----HHTSC----------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred -hH----hhhhh----------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc
Confidence 11 11100 0112223344555556677899999999411 12222222222
Q ss_pred CCCCCEEEEEeCChHH-HHHhc---CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 172 RGYGERLIITSRNEKL-TTEMV---GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 172 ~~~gs~IIiTTR~~~v-~~~~~---~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
...+..||.||..... -..+. .....+.+.+.+. ++...++...+.......+. ...++++.+.|..
T Consensus 337 ~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~-~eR~~IL~~~~~~~~l~~~~----~l~~la~~t~g~s 407 (489)
T 3hu3_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHTKNMKLADDV----DLEQVANETHGHV 407 (489)
T ss_dssp TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCH-HHHHHHHHHHTTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCH-HHHHHHHHHHHhcCCCcchh----hHHHHHHHccCCc
Confidence 2334566667765432 11221 2244678877776 66777777655443222111 3455666776653
No 120
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.18 E-value=2.4e-05 Score=70.91 Aligned_cols=47 Identities=23% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.++|.+..+..+.+.+... ......+.|+|++|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHL--APLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHH--TTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHH--hCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 56899999999888777652 123457889999999999999999987
No 121
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.16 E-value=8.4e-06 Score=85.34 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCC---CCCccccceEEEEecCCcccHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKP---DVKTQFVPRIWVCTMSGQKTAESIVKR 114 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~---~~~~~F~~~~~v~~v~~~~~~~~~~~~ 114 (398)
+++|||+.+++.+...|.. ....-+.|+|++|+|||++|+.+++.. .+.......-++. +.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~-~~~---------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDM---------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C------------
T ss_pred CCccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE-ecc----------
Confidence 5799999999999999965 334458899999999999999998751 0111111111221 111
Q ss_pred HHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH-----
Q 015891 115 ILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT----- 189 (398)
Q Consensus 115 il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~----- 189 (398)
+.... ..........+......++.+|++| ...+....+...+. ....++|.||.......
T Consensus 245 -----g~~~~------G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~-~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 -----GTKYR------GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA-RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT-SSSCEEEEECCTTTTHHHHTTC
T ss_pred -----ccccc------chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh-cCCEEEEeCCChHHHHHHhhcc
Confidence 00000 0111122334444445678999999 33333333433333 23456666665443111
Q ss_pred -HhcCCCceEEcCCCCChhHHHHHHHhhh
Q 015891 190 -EMVGEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 190 -~~~~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
.+......+.+++.+. ++...++....
T Consensus 311 ~al~rRf~~i~v~~p~~-~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSV-DESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCH-HHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCH-HHHHHHHHHHH
Confidence 1111235688988887 66777777543
No 122
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.16 E-value=4.9e-06 Score=88.21 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++||+.++..+...|.. .....+.|+|++|+|||+||+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 6799999999999999865 33445789999999999999999875
No 123
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.13 E-value=1e-05 Score=78.37 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHHHhCCC--cEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHH
Q 015891 131 GQGLAFLDYVLQQQLIGKR--YLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 131 ~~~~~~~~~~l~~~l~~k~--~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~ 190 (398)
.+++++++..+...+..++ -+|||||++ |....+.+...+. ...+..||++||+..++..
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 4889999999999998888 999999999 4555555544443 2258899999999988753
No 124
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.13 E-value=1.4e-05 Score=82.53 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=57.1
Q ss_pred HHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCC---cEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeC
Q 015891 114 RILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKR---YLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSR 183 (398)
Q Consensus 114 ~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~---~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR 183 (398)
+.+..+++... .......+++++++..+++.|..++ -+|+||++. |......+...+. ...|.+||++||
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtH 604 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 604 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 44555666432 2334458999999999999998765 599999999 4433333333332 234789999999
Q ss_pred ChHHHHHhcCCCceEEc
Q 015891 184 NEKLTTEMVGEENLHQL 200 (398)
Q Consensus 184 ~~~v~~~~~~~~~~~~l 200 (398)
+.+++.. .++++.+
T Consensus 605 d~~~~~~---~d~i~~l 618 (670)
T 3ux8_A 605 NLDVIKT---ADYIIDL 618 (670)
T ss_dssp CHHHHTT---CSEEEEE
T ss_pred CHHHHHh---CCEEEEe
Confidence 9987643 4667776
No 125
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.04 E-value=7.8e-07 Score=80.94 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 36 PPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++++|.+..++.+.+.+..-. .....+.+.|+|++|+|||+||+.+++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34679999999988888765200 0112344889999999999999999886
No 126
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.02 E-value=1.5e-05 Score=72.18 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH--HHcCCCCCCCCCcCCCchHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL--KRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il--~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
.-.+++|+|++|+|||||++.+..- +...+...+++....-..-.... ..++ ..++.. ......
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----------~~~l~~ 89 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----------TKSFAD 89 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----------BSCHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----------HHHHHH
Confidence 4679999999999999999999764 22222333333211100000000 0000 001110 122367
Q ss_pred HHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 140 VLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
.+++.+..++-+|++|++.|.+....+.... ..|..|++|||+.+....
T Consensus 90 ~la~aL~~~p~illlDEp~D~~~~~~~l~~~--~~g~~vl~t~H~~~~~~~ 138 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMRDLETVETALRAA--ETGHLVFGTLHTNTAIDT 138 (261)
T ss_dssp HHHHHHHHCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSSHHHH
T ss_pred HHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH--ccCCEEEEEeCcchHHHH
Confidence 7888888899999999998775544333222 247789999999775443
No 127
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.02 E-value=1.5e-05 Score=83.42 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=62.6
Q ss_pred HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
.+++..+++... .......+++++++..|++.|..+ +-++|||++. |....+.+...+. ...|..||++|
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 456777777652 334445899999999999999885 6999999999 4444444443332 23488999999
Q ss_pred CChHHHHHhcCCCceEEcCC
Q 015891 183 RNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l~~ 202 (398)
|+.+++ .. .++++.+.|
T Consensus 791 Hdl~~i-~~--aDrii~L~p 807 (842)
T 2vf7_A 791 HKMQVV-AA--SDWVLDIGP 807 (842)
T ss_dssp CCHHHH-TT--CSEEEEECS
T ss_pred CCHHHH-Hh--CCEEEEECC
Confidence 999887 33 467788754
No 128
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.02 E-value=3.6e-05 Score=72.40 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=92.8
Q ss_pred CCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
+.++|.+..++.+...+... ........++|+|++|+||||||+.+++. ....|. ... ..-...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~s-g~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTS-GPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEE-TTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEe-chHhcC---------
Confidence 56889988888888777531 01223467999999999999999999886 322221 111 100000
Q ss_pred HHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC--HHHHHHHHhHcC-CC------------------CC
Q 015891 117 KRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED--MEVCKHLSKVLP-RG------------------YG 175 (398)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--~~~~~~l~~~l~-~~------------------~g 175 (398)
.......+ ..+ .++.++++|++.. ....+.+...+. .. +.
T Consensus 90 -----------------~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 -----------------QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp -----------------HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred -----------------HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 11111111 111 2456888898873 233333332221 10 01
Q ss_pred CEEE-EEeCChHHHHHhcCC-CceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 176 ERLI-ITSRNEKLTTEMVGE-ENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 176 s~II-iTTR~~~v~~~~~~~-~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
..++ .|++...+...+... ...+.+++.+. ++...++.+.........+ .+.+..|++.+.|.|..+..
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~-~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTV-KELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCH-HHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCH-HHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHH
Confidence 2233 344433322222122 34578999988 6677777764322222222 23678889999999976544
No 129
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.01 E-value=2e-05 Score=73.96 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCC--CchHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEG--QGLAFLDYV 140 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~--~~~~~~~~~ 140 (398)
-..++|+|++|+|||||++.+..- +. .-...+.+.... ... .... ...... .+++.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~-e~~-------------~~~~-~~~i~~~~ggg~~~r~~ 232 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTE-EIV-------------FKHH-KNYTQLFFGGNITSADC 232 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSC-CCC-------------CSSC-SSEEEEECBTTBCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCee-ccc-------------cccc-hhEEEEEeCCChhHHHH
Confidence 458999999999999999999876 22 224455555221 110 0000 000000 145677888
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHH
Q 015891 141 LQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTT 189 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~ 189 (398)
+++.|..++-+|++|++.+.+..+.+.... . .+..+|+|||..+...
T Consensus 233 la~aL~~~p~ilildE~~~~e~~~~l~~~~-~-g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 233 LKSCLRMRPDRIILGELRSSEAYDFYNVLC-S-GHKGTLTTLHAGSSEE 279 (330)
T ss_dssp HHHHTTSCCSEEEECCCCSTHHHHHHHHHH-T-TCCCEEEEEECSSHHH
T ss_pred HHHHhhhCCCEEEEcCCChHHHHHHHHHHh-c-CCCEEEEEEcccHHHH
Confidence 999999999999999999866555554332 2 2335889998876443
No 130
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.00 E-value=5.4e-05 Score=70.20 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.++|++..+..+.+.+... ......|.|+|++|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~--a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV--APSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH--CSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH--hCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 45899999999999888762 233456889999999999999999875
No 131
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.00 E-value=2.8e-05 Score=85.65 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=51.7
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+++++++..+++.+-.++-++||||+. |.+....+...+. ...|.++|++||+.+.... .++++.++
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~---~d~i~vl~ 598 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN---ADVIAGFD 598 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT---CSEEEECS
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc---CCEEEEEE
Confidence 358999999999999999999999999999 4444444444433 2347899999999877654 35555554
No 132
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.99 E-value=1.9e-05 Score=69.71 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-.+++|+|++|+|||||++.++..
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999763
No 133
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.97 E-value=5.6e-06 Score=74.15 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..-.+++|+|++|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3467899999999999999998873
No 134
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=5.5e-05 Score=79.14 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=39.1
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++||+.+++.+.+.|.. ....-+.|+|++|+|||++|+.+++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999965 34566789999999999999999865
No 135
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.96 E-value=7e-05 Score=73.51 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=37.7
Q ss_pred CCCcccchhhHHHHHHHHhcc-CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 37 PANVHGFANEELHLQKLLSNR-GTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~~-~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+.++|.+..++.+..++... ......+.+.++|++|+|||+||+.+++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 377999999988766554331 12233467999999999999999999876
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.95 E-value=3.7e-06 Score=79.71 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=66.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC----CCCcCCCchHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT----TNSFEGQGLAFLD 138 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~~~ 138 (398)
..+++|+|++|+|||||++.+... +.......+.. +...... ...... .... ........
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t--~ed~~e~-----------~~~~~~~~v~q~~~-~~~~~~~~ 186 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILT--IEDPIEF-----------VHESKKCLVNQREV-HRDTLGFS 186 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEE--EESSCCS-----------CCCCSSSEEEEEEB-TTTBSCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEE--ccCcHHh-----------hhhccccceeeeee-ccccCCHH
Confidence 459999999999999999999764 22211222221 1111100 000000 0000 01112234
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 139 YVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 139 ~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
..+++.|..++-+|++|++.+.+..+.+.... ..|..||+|+|+.+.+..
T Consensus 187 ~~La~aL~~~PdvillDEp~d~e~~~~~~~~~--~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMRDLETIRLALTAA--ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEESCSSHHHH
T ss_pred HHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH--hcCCEEEEEEccChHHHH
Confidence 57999999999999999999987766554443 237789999999876644
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=3e-05 Score=68.38 Aligned_cols=117 Identities=21% Similarity=0.152 Sum_probs=62.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCC--------------
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTN-------------- 127 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~-------------- 127 (398)
.-.+++|.|++|+|||||++.++.. ....-..++|+. ... ....+... +..++.......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVT-TEE--SRDSIIRQ-AKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEE-SSS--CHHHHHHH-HHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEE-ccc--CHHHHHHH-HHHhcchHHHHhhCCEEEEecccccc
Confidence 3468999999999999999999854 222112355555 322 33333332 224443221100
Q ss_pred ----CcCCCchHHHHHHHHHHHh-CCCc--EEEecCCC-----CH----HHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891 128 ----SFEGQGLAFLDYVLQQQLI-GKRY--LIVLDDFE-----DM----EVCKHLSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 128 ----~~~~~~~~~~~~~l~~~l~-~k~~--LlVLDdv~-----~~----~~~~~l~~~l~~~~gs~IIiTTR~~ 185 (398)
.....+...+...+...+. .++- +||+|++. +. ..++.+.... ...+..||+|||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~-~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVL-NKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHH-HHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHH-HhCCCeEEEEeccC
Confidence 0001134444444444443 3666 99999998 32 2222232221 23478999999987
No 138
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.94 E-value=1.7e-05 Score=87.71 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=51.6
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEcC
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQLQ 201 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l~ 201 (398)
...+++++++-.+++++-.++-+||||+++ |.+....+...+. ...++++|+++|.-+... ..++++-|+
T Consensus 1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~---~aD~I~Vld 1289 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM---NADCIAVVS 1289 (1321)
T ss_dssp CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT---TCSEEEEES
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH---hCCEEEEEE
Confidence 347899999999999999999999999998 4455556666665 346788888888654332 345666654
No 139
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.93 E-value=3.9e-05 Score=67.13 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=66.0
Q ss_pred HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCC---
Q 015891 49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGT--- 125 (398)
Q Consensus 49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~--- 125 (398)
.|..++.. .-..-.+++|.|++|+|||||++.++. ..-..++|++ .........+ ..+...++.....
T Consensus 8 ~LD~~l~G--gi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (220)
T 2cvh_A 8 SLDSLLGG--GFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVD-TEGGFSPERL-VQMAETRGLNPEEALS 78 (220)
T ss_dssp HHHHHTTS--SBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEE-SSCCCCHHHH-HHHHHTTTCCHHHHHH
T ss_pred HHHHhhcC--CCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEE-CCCCCCHHHH-HHHHHhcCCChHHHhh
Confidence 34455531 224456899999999999999999987 1123467776 5443344333 2333333321100
Q ss_pred -CCCcCCCchH---HHHHHHHHHHhCCCcEEEecCCCCH-----------HH-HHH---HHhHcCCCCCCEEEEEeCCh
Q 015891 126 -TNSFEGQGLA---FLDYVLQQQLIGKRYLIVLDDFEDM-----------EV-CKH---LSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 126 -~~~~~~~~~~---~~~~~l~~~l~~k~~LlVLDdv~~~-----------~~-~~~---l~~~l~~~~gs~IIiTTR~~ 185 (398)
.........+ .....+...+..++-+||+|++... .. .+. +.... ...+..||+|++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~vi~~~h~~ 156 (220)
T 2cvh_A 79 RFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIA-RKHNIPVIVINQVH 156 (220)
T ss_dssp HEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH-HHHTCCEEEEECSS
T ss_pred cEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHH-HHcCCEEEEEeeEE
Confidence 0000111222 2233333333335889999998832 11 111 22221 22367899999864
No 140
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.93 E-value=1.1e-05 Score=88.78 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=50.3
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
..+++++++..+++++..++-+||||++. |......+...+. ...|.+||++||+.+.... .++++.+
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~---~dri~vl 1242 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN---ADLIVVI 1242 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS---CSEEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc---CCEEEEE
Confidence 47999999999999999999999999999 4444444444443 2347789999998876543 3555555
No 141
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.91 E-value=5.9e-05 Score=79.30 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=61.5
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
.+++..+++.. ........+++++++..+++.|..+ +-++|||++. |......+...+. ...|..||++|
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45677777765 2333445899999999999999875 4999999999 4444444433332 23478999999
Q ss_pred CChHHHHHhcCCCceEEcCC
Q 015891 183 RNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l~~ 202 (398)
|+.+++. ..++++.+.|
T Consensus 906 Hdl~~i~---~aDrIivL~p 922 (972)
T 2r6f_A 906 HNLDVIK---TADYIIDLGP 922 (972)
T ss_dssp CCHHHHT---TCSEEEEECS
T ss_pred CCHHHHH---hCCEEEEEcC
Confidence 9998764 2467777754
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.89 E-value=0.00021 Score=65.77 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++.+.|+|++|+|||+||+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999987
No 143
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.88 E-value=1.8e-05 Score=87.43 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=46.3
Q ss_pred cCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HHHHHHHHhHcC-CCCCCEEEEEeCChHHHHHhcCCCceEEc
Q 015891 129 FEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---MEVCKHLSKVLP-RGYGERLIITSRNEKLTTEMVGEENLHQL 200 (398)
Q Consensus 129 ~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~~~~~~~~~~~l 200 (398)
...+++++++..+++++-.++-++||||+.+ .+....+...+. ...+.++|++||....... .++++.+
T Consensus 553 ~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~---aD~Iivl 625 (1321)
T 4f4c_A 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN---ADLIISC 625 (1321)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT---CSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh---CCEEEEe
Confidence 4589999999999999999999999999983 222223333332 1246677777777654433 3455544
No 144
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=6e-05 Score=78.84 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHH
Q 015891 38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIV 112 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~ 112 (398)
..++|.+..++.+...+.... .......+.++|++|+|||++|+.+++. ....-...+.++ ++.-..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~-~s~~~~----- 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRID-MSEYME----- 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEE-GGGGCS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEe-chhccc-----
Confidence 568999999999888887521 1122347999999999999999999876 222112233444 332110
Q ss_pred HHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC--CHHHHHHHHhHcCC------------CCCCE
Q 015891 113 KRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE--DMEVCKHLSKVLPR------------GYGER 177 (398)
Q Consensus 113 ~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~--~~~~~~~l~~~l~~------------~~gs~ 177 (398)
... .. .. .+...+ .....+|+|||++ +.+....|...+.. ..+.+
T Consensus 563 ---------~~~------~~-~~----~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 622 (758)
T 3pxi_A 563 ---------KHS------TS-GG----QLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTI 622 (758)
T ss_dssp ---------SCC------CC--------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCE
T ss_pred ---------ccc------cc-cc----hhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeE
Confidence 000 00 00 111222 2345699999998 44544444444431 13568
Q ss_pred EEEEeCC-----hHH----H----HH-hcCCCceEEcCCCCChhHHHHHHHh
Q 015891 178 LIITSRN-----EKL----T----TE-MVGEENLHQLQPLSDQESCWLIYRD 215 (398)
Q Consensus 178 IIiTTR~-----~~v----~----~~-~~~~~~~~~l~~L~~~e~~~~l~~~ 215 (398)
||+||.. ..+ . .. ......++.+.||+. ++...++..
T Consensus 623 iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~-~~~~~i~~~ 673 (758)
T 3pxi_A 623 LIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK-KHLTEIVSL 673 (758)
T ss_dssp EEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH-HHHHHHHHH
T ss_pred EEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH-HHHHHHHHH
Confidence 8888872 111 0 00 112246889999988 656655544
No 145
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.88 E-value=7.6e-05 Score=78.72 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 113 KRILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
.+++..+++... .......+++++++..|++.|..+ +-|+|||++. |....+.+...+. ...|.+||++|
T Consensus 786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456666776542 233445899999999999999765 4799999999 4444444444433 23478999999
Q ss_pred CChHHHHHhcCCCceEEcCC
Q 015891 183 RNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l~~ 202 (398)
|+.+++.. .++++.|.|
T Consensus 866 HdL~~i~~---ADrIivLgp 882 (916)
T 3pih_A 866 HNLDVIKN---ADHIIDLGP 882 (916)
T ss_dssp CCHHHHTT---CSEEEEEES
T ss_pred CCHHHHHh---CCEEEEecC
Confidence 99987653 577888854
No 146
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=4e-05 Score=68.14 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891 48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDD 123 (398)
Q Consensus 48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~ 123 (398)
..|..+|.. .-..-.+++|+|++|+|||||++.++....... .-..++|+. ......... +..++..++...
T Consensus 11 ~~LD~~l~g--gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~-~~~~~~~~~-~~~~~~~~g~~~ 86 (243)
T 1n0w_A 11 KELDKLLQG--GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID-TEGTFRPER-LLAVAERYGLSG 86 (243)
T ss_dssp HHHHHHTTT--SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHH-HHHHHHHTTCCH
T ss_pred hHHHHhhcC--CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE-CCCCcCHHH-HHHHHHHcCCCH
Confidence 345555532 223567999999999999999999987421221 124577777 444333332 233445555432
Q ss_pred C----CCCCcCCCchHH---HHHHHHHHHh-CCCcEEEecCCCCH---H-------H-----HHHHHhHc-C--CCCCCE
Q 015891 124 G----TTNSFEGQGLAF---LDYVLQQQLI-GKRYLIVLDDFEDM---E-------V-----CKHLSKVL-P--RGYGER 177 (398)
Q Consensus 124 ~----~~~~~~~~~~~~---~~~~l~~~l~-~k~~LlVLDdv~~~---~-------~-----~~~l~~~l-~--~~~gs~ 177 (398)
. ............ ....+...+. .++-+||+|++... . . ...+...+ . ...++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t 166 (243)
T 1n0w_A 87 SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA 166 (243)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 0 000000112222 2223444443 47889999998832 1 1 11111111 1 234889
Q ss_pred EEEEeCChH
Q 015891 178 LIITSRNEK 186 (398)
Q Consensus 178 IIiTTR~~~ 186 (398)
||+|++...
T Consensus 167 vi~~~h~~~ 175 (243)
T 1n0w_A 167 VVITNQVVA 175 (243)
T ss_dssp EEEEC----
T ss_pred EEEEeeeee
Confidence 999998653
No 147
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.82 E-value=0.00057 Score=61.25 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 36 PPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++++|.+....++.++...-. .-.-.+-+.|+|++|+|||||++.+++.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34678998877777766543210 0111223999999999999999999986
No 148
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.80 E-value=8.2e-05 Score=78.52 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=60.8
Q ss_pred HHHHHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC---CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEe
Q 015891 113 KRILKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK---RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITS 182 (398)
Q Consensus 113 ~~il~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTT 182 (398)
.+++..+++.. ........+++++++..+++.|..+ +-++|||++. |....+.+...+. ...|..||++|
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 35667777754 1233445899999999999999875 4999999999 4444444443332 23478999999
Q ss_pred CChHHHHHhcCCCceEEcCC
Q 015891 183 RNEKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 183 R~~~v~~~~~~~~~~~~l~~ 202 (398)
|+.+++. . .++++.+.|
T Consensus 924 Hdl~~i~-~--aDrIivL~p 940 (993)
T 2ygr_A 924 HNLDVIK-T--SDWIIDLGP 940 (993)
T ss_dssp CCHHHHT-T--CSEEEEEES
T ss_pred CCHHHHH-h--CCEEEEECC
Confidence 9998764 2 466777743
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.78 E-value=0.00064 Score=61.88 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++++|.+...+++.++..... .-.-.+-++|+|++|+|||||++.++..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3444679999988877776554210 0011223899999999999999999987
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.76 E-value=0.00035 Score=63.62 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=80.2
Q ss_pred CCCcccchhhHHHHHHHHhc---------cCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCccc
Q 015891 37 PANVHGFANEELHLQKLLSN---------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKT 107 (398)
Q Consensus 37 ~~~~vGR~~~~~~l~~~L~~---------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~ 107 (398)
-+++.|.++..+.|.+.+.. ...-.-.+-++|+|++|+|||||++.++.. ... ..+.+. ...-..
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~-g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVK-GPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEE-TTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEE-cHHHHh
Confidence 36788988888888775431 001111233999999999999999999886 222 123333 111000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcCC--
Q 015891 108 AESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLPR-- 172 (398)
Q Consensus 108 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~~-- 172 (398)
. ............+.......+.++++|+++.. .....+...+..
T Consensus 83 ~--------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~ 142 (274)
T 2x8a_A 83 M--------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE 142 (274)
T ss_dssp S--------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC
T ss_pred h--------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc
Confidence 0 00000011112222222446789999999731 111222222322
Q ss_pred -CCCCEEEEEeCChHHHHHh----cCCCceEEcCCCCChhHHHHHHHhhhC
Q 015891 173 -GYGERLIITSRNEKLTTEM----VGEENLHQLQPLSDQESCWLIYRDSVR 218 (398)
Q Consensus 173 -~~gs~IIiTTR~~~v~~~~----~~~~~~~~l~~L~~~e~~~~l~~~~~~ 218 (398)
....-++.+|...++.... ...+..+.++..+. ++...+++....
T Consensus 143 ~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~-~~r~~il~~~~~ 192 (274)
T 2x8a_A 143 ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP-ADRLAILKTITK 192 (274)
T ss_dssp STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH-HHHHHHHHHHTT
T ss_pred ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH-HHHHHHHHHHHh
Confidence 1234456677766544321 12366778865555 777778776553
No 151
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.76 E-value=0.00015 Score=67.88 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|++..++.+...+.. ...+.|+|++|+|||+||+.+.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999998888765 246899999999999999999886
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.74 E-value=9.5e-05 Score=67.52 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=61.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc--------cccceEEEEecCCccc-HHHHH------------HHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT--------QFVPRIWVCTMSGQKT-AESIV------------KRILKRLG 120 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~--------~F~~~~~v~~v~~~~~-~~~~~------------~~il~~l~ 120 (398)
.-.+++|+|++|+|||||++.++....... .-..++++. ...... ....+ ..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~-~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP-AEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE-SSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE-CCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 457899999999999999999875310000 012355665 443321 11111 12234444
Q ss_pred CCCCCCCCcC-CCchHHHHHHHHHHHhCCCcEEEecCCCC--------HHHHHHHHhHcC---CCCCCEEEEEeCChHHH
Q 015891 121 VDDGTTNSFE-GQGLAFLDYVLQQQLIGKRYLIVLDDFED--------MEVCKHLSKVLP---RGYGERLIITSRNEKLT 188 (398)
Q Consensus 121 ~~~~~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVLDdv~~--------~~~~~~l~~~l~---~~~gs~IIiTTR~~~v~ 188 (398)
+......... .+..+ ...+. .+..++-+||||.+.. ......+...+. ...|+.||++||+....
T Consensus 108 l~~~~~~~~~~ls~g~--~~~i~-~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 108 IQPLIGSLPNIMAPEW--FDGLK-RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp ECCCTTSCCCTTSHHH--HHHHH-HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred EeecCCCCcccCCHHH--HHHHH-HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 3332111111 22222 33343 3344688999999884 111122222221 23488999999987543
No 153
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.73 E-value=0.00062 Score=67.23 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred CCCCCCcccchhhHHHHHHHHhccC--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 34 SKPPANVHGFANEELHLQKLLSNRG--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 34 ~~~~~~~vGR~~~~~~l~~~L~~~~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++++|.+..+..+.++...-. ...-.+-+.|+|++|+||||||++++..
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445789999988888777654310 0111334999999999999999999987
No 154
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.72 E-value=7.2e-06 Score=71.69 Aligned_cols=54 Identities=9% Similarity=0.237 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891 134 LAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLP-RGYGERLIITSRNEKLTT 189 (398)
Q Consensus 134 ~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~ 189 (398)
+++++..+.+.+..++-+|+||++.+. ..+.+...+. ...|..|| +||+...+.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 444455667778889999999999954 3333333332 23477888 999886544
No 155
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.70 E-value=0.0005 Score=72.20 Aligned_cols=156 Identities=11% Similarity=0.126 Sum_probs=86.4
Q ss_pred CCCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc
Q 015891 35 KPPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ 105 (398)
Q Consensus 35 ~~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~ 105 (398)
..-++++|.+..++.|.+++... -.-.....+.|+|++|+||||||+.+++. ....| +.+. ..
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~-~~-- 272 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLIN-GP-- 272 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEE-HH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEE-ch--
Confidence 33467999999999998887530 01234567999999999999999999987 33332 2232 10
Q ss_pred ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH-------------HHHHHHHhHcC-
Q 015891 106 KTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM-------------EVCKHLSKVLP- 171 (398)
Q Consensus 106 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~-------------~~~~~l~~~l~- 171 (398)
. +. +.. ...........+.......+.++++||++.. .....+...+.
T Consensus 273 ----~----l~---~~~-------~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 273 ----E----IM---SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp ----H----HS---SSS-------TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS
T ss_pred ----H----hh---hhh-------hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh
Confidence 0 00 000 0111223334455555567899999999511 11222222222
Q ss_pred --CCCCCEEEEEeCChHHHHH-hc---CCCceEEcCCCCChhHHHHHHHhhh
Q 015891 172 --RGYGERLIITSRNEKLTTE-MV---GEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 172 --~~~gs~IIiTTR~~~v~~~-~~---~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
...+..+|.||........ +. .....+.+...+. +....++....
T Consensus 335 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~-~~r~~il~~~~ 385 (806)
T 1ypw_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA-TGRLEILQIHT 385 (806)
T ss_dssp SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH-HHHHHHHHHTT
T ss_pred hcccccEEEecccCCchhcCHHHhcccccccccccCCCCH-HHHHHHHHHHH
Confidence 2235567777766532221 11 1134456655555 55666666543
No 156
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.69 E-value=0.0001 Score=69.72 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=70.9
Q ss_pred HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc---c-ceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891 49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF---V-PRIWVCTMSGQKTAESIVKRILKRLGVDDG 124 (398)
Q Consensus 49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F---~-~~~~v~~v~~~~~~~~~~~~il~~l~~~~~ 124 (398)
.|..+|.. .-..-.++.|+|++|+|||||+++++......... . .++|++ ....+.. ..+..+...+++...
T Consensus 119 ~LD~lL~g--gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~-~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 119 SLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRP-ERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCH-HHHHHHHHTTTCCHH
T ss_pred HHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCH-HHHHHHHHHcCCCHH
Confidence 34444432 33467899999999999999999998762112222 2 347887 4433322 223444554443321
Q ss_pred CC-------CCcCCCchHHHHHHHHHHHh------CCCcEEEecCCCCH-HH--------------HHHHHhHcC---CC
Q 015891 125 TT-------NSFEGQGLAFLDYVLQQQLI------GKRYLIVLDDFEDM-EV--------------CKHLSKVLP---RG 173 (398)
Q Consensus 125 ~~-------~~~~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~~~-~~--------------~~~l~~~l~---~~ 173 (398)
.. .........+....+...+. .++-+||+|.+... +. ...+...+. ..
T Consensus 195 ~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~ 274 (349)
T 1pzn_A 195 EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 274 (349)
T ss_dssp HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000112223334444443 47889999999843 11 112221221 23
Q ss_pred CCCEEEEEeCChH
Q 015891 174 YGERLIITSRNEK 186 (398)
Q Consensus 174 ~gs~IIiTTR~~~ 186 (398)
.+..||+|++...
T Consensus 275 ~~~tvii~~h~~~ 287 (349)
T 1pzn_A 275 YDIAVFVTNQVQA 287 (349)
T ss_dssp TTCEEEEEEECC-
T ss_pred cCcEEEEEccccc
Confidence 4789999998653
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.67 E-value=7.1e-05 Score=70.69 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=61.4
Q ss_pred hHHHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891 46 EELHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG 124 (398)
Q Consensus 46 ~~~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~ 124 (398)
-...|..+|. . .-..-.++.|.|++|+||||||.+++.. ....=..++|++ .....+.. .++.++....
T Consensus 45 G~~~LD~~Lg~G--Gl~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~-~E~~~~~~-----~a~~lG~~~~ 114 (349)
T 2zr9_A 45 GSISLDVALGIG--GLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFID-AEHALDPE-----YAKKLGVDTD 114 (349)
T ss_dssp SCHHHHHHTSSS--SEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCGG
T ss_pred CCHHHHHHhccC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEE-CCCCcCHH-----HHHHcCCCHH
Confidence 3445666664 2 2235678999999999999999999765 222223467877 65544432 2555665432
Q ss_pred CCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891 125 TTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE 158 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~ 158 (398)
..........++....+..... .+.-+||+|.+.
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 115 SLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGG
T ss_pred HeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChH
Confidence 2211112345555544444443 357899999987
No 158
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.67 E-value=9e-05 Score=74.10 Aligned_cols=127 Identities=14% Similarity=0.058 Sum_probs=73.9
Q ss_pred HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC-------
Q 015891 50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD------- 122 (398)
Q Consensus 50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~------- 122 (398)
+...|.. .-..-.+++|.|++|+|||||++.++.. ....=..++++. .... ...+.... ..++..
T Consensus 270 ld~vL~g--~i~~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~-~ee~--~~~l~~~~-~~~g~~~~~~~~~ 341 (525)
T 1tf7_A 270 LDEMCGG--GFFKDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFA-YEES--RAQLLRNA-YSWGMDFEEMERQ 341 (525)
T ss_dssp HHHHTTS--SEESSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEE-SSSC--HHHHHHHH-HTTSCCHHHHHHT
T ss_pred HHHHhCC--CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEE-EeCC--HHHHHHHH-HHcCCCHHHHHhC
Confidence 4444432 2245679999999999999999999765 111111234544 2221 22222221 222221
Q ss_pred ---C-CCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCC---HH-----HHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 123 ---D-GTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFED---ME-----VCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 123 ---~-~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~---~~-----~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
. ....+...+.++.++..+.+.+..++-+||+| +.+ .. ..+.+...+. ...|..||+||++.
T Consensus 342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 0 11122335778888889999999999999999 652 12 2333322222 23578999999986
No 159
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.65 E-value=0.00011 Score=70.49 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=64.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCCC----CCCCcCCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG----TTNSFEGQ 132 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~ 132 (398)
..-.++.|+|++|+|||||++.++-...... .-..++|++ ....+.... +..+++.+++... ........
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid-~E~~~~~~r-l~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID-TEGTFRPVR-LVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe-CCCccCHHH-HHHHHHHcCCChHhHhhcEEEeccC
Confidence 3457999999999999999997753211211 123477777 444444333 3445666665421 00000112
Q ss_pred chHHHH---HHHHHHH-hCCCcEEEecCCCCH-----H--------H--HHHHHhHc---CCCCCCEEEEEeCCh
Q 015891 133 GLAFLD---YVLQQQL-IGKRYLIVLDDFEDM-----E--------V--CKHLSKVL---PRGYGERLIITSRNE 185 (398)
Q Consensus 133 ~~~~~~---~~l~~~l-~~k~~LlVLDdv~~~-----~--------~--~~~l~~~l---~~~~gs~IIiTTR~~ 185 (398)
...... ..+...+ ..+.-+||+|.+... . + ...+...+ ....+..||+|+|..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 222222 2222322 346889999998731 1 0 01111111 123488999999863
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=0.00063 Score=71.09 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|.+..++.+...+.... .......+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 468899999988888776410 1123457999999999999999999886
No 161
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.54 E-value=9.1e-05 Score=77.03 Aligned_cols=177 Identities=15% Similarity=0.209 Sum_probs=86.1
Q ss_pred CCCCcccchhhHHHHHHHHhcc---------CCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcc
Q 015891 36 PPANVHGFANEELHLQKLLSNR---------GTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQK 106 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~---------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~ 106 (398)
.-.++.|.++..+.|.+.+... ......+-+.++|++|+|||.||+++++. .... ++. ++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~-v~~-- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FIS-IKG-- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEE-CCH--
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEE-ecc--
Confidence 3466788888888888765431 12234567899999999999999999998 3322 222 221
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHHHHhCCCcEEEecCCCCH----------------HHHHHHHhHc
Q 015891 107 TAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQQLIGKRYLIVLDDFEDM----------------EVCKHLSKVL 170 (398)
Q Consensus 107 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~----------------~~~~~l~~~l 170 (398)
.+++... -......++..+..+-...+++|+||+++.. .....|...+
T Consensus 545 ------~~l~s~~----------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~m 608 (806)
T 3cf2_A 545 ------PELLTMW----------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEM 608 (806)
T ss_dssp ------HHHHTTT----------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHH
T ss_pred ------chhhccc----------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHH
Confidence 1122111 0123344455555555668999999999832 0112222222
Q ss_pred C---CCCCCEEEEEeCChHHHHH-h-c--CCCceEEcCCCCChhHHHHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCc
Q 015891 171 P---RGYGERLIITSRNEKLTTE-M-V--GEENLHQLQPLSDQESCWLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQN 243 (398)
Q Consensus 171 ~---~~~gs~IIiTTR~~~v~~~-~-~--~~~~~~~l~~L~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlP 243 (398)
. ...+.-||-||...+.+.. + . .-+..+.++..+. ++...+|+..+.......+- ....|++.+.|..
T Consensus 609 dg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~-~~R~~il~~~l~~~~~~~~~----dl~~la~~t~g~S 683 (806)
T 3cf2_A 609 DGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE-KSRVAILKANLRKSPVAKDV----DLEFLAKMTNGFS 683 (806)
T ss_dssp HSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC------CHHHHTTTTTSSCC--CCC------------------
T ss_pred hCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCH-HHHHHHHHHHhcCCCCCCCC----CHHHHHHhCCCCC
Confidence 2 2223334445543322111 1 1 2367788855444 77778887766543222111 3456677777765
No 162
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=0.00035 Score=74.06 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred CcccchhhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.++|.+..++.+...+.... .......+.|+|++|+|||++|+.+++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999888876521 1122368999999999999999999876
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.00019 Score=67.72 Aligned_cols=103 Identities=18% Similarity=0.115 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891 47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT 126 (398)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~ 126 (398)
...|...|.. +.-..-.++.|.|++|+|||||+.+++.. ....=..++|++ .....+.. .++.++......
T Consensus 46 ~~~LD~~Lg~-GGi~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId-~E~s~~~~-----ra~rlgv~~~~l 116 (356)
T 3hr8_A 46 SLAIDIATGV-GGYPRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFID-AEHALDPV-----YAKNLGVDLKSL 116 (356)
T ss_dssp CHHHHHHTSS-SSEETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHHTCCGGGC
T ss_pred CHHHHHHhcc-CCccCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEe-cccccchH-----HHHHcCCchhhh
Confidence 3456666641 12345679999999999999999999865 222222367777 55444433 455666553322
Q ss_pred CCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891 127 NSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE 158 (398)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~ 158 (398)
........++....+...+. .+.-++|+|.+.
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 117 LISQPDHGEQALEIVDELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp EEECCSSHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred hhhhccCHHHHHHHHHHHhhhcCCCeEEehHhh
Confidence 21223445555555555554 567899999876
No 164
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.52 E-value=0.00024 Score=75.20 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=61.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCC--CCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFL 137 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 137 (398)
...+++|+|++|+||||+++.+.--.. ....|-. ...+..+. .++..++...... ...+.....
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d----------~i~~~ig~~d~l~--~~lStf~~e 728 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD----------CILARVGAGDSQL--KGVSTFMAE 728 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS----------EEEEECC-----------CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH----------HHHHhcCchhhHH--HhHhhhHHH
Confidence 457999999999999999999821000 0001110 11111000 0111111111100 012344444
Q ss_pred HHHHHHHH--hCCCcEEEecCCC---CHHHHHH----HHhHcCCCCCCEEEEEeCChHHHHHh
Q 015891 138 DYVLQQQL--IGKRYLIVLDDFE---DMEVCKH----LSKVLPRGYGERLIITSRNEKLTTEM 191 (398)
Q Consensus 138 ~~~l~~~l--~~k~~LlVLDdv~---~~~~~~~----l~~~l~~~~gs~IIiTTR~~~v~~~~ 191 (398)
...+...+ ..++-|++||++. |...... +...+....|+++|++||+.+++..+
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALA 791 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGG
T ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHh
Confidence 45555555 6788999999997 4422222 22223233589999999998877643
No 165
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.49 E-value=0.00015 Score=68.26 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCCCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 36 PPANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-++++|.+...+.+...+.. .....+.|+|++|+|||+||+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~----~~~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVD----PGIGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHC----GGGCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhC----CCCceEEEECCCCccHHHHHHHHHHh
Confidence 346699998866665444432 12334999999999999999999876
No 166
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.47 E-value=0.00022 Score=65.95 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=45.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEec--CCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTM--SGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
..+++.|+|++|+|||+||.+++.. .-..+.|+. + .+. +... . .+.+....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs-~~~eE~-------------v~~~-------~-~~le~~l~ 174 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYAT-VRFGEP-------------LSGY-------N-TDFNVFVD 174 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEE-EEBSCS-------------STTC-------B-CCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEE-ecchhh-------------hhhh-------h-cCHHHHHH
Confidence 3467789999999999999999874 112345666 4 221 0000 0 23455555
Q ss_pred HHHHHHhCCCcEEEecCCCC
Q 015891 140 VLQQQLIGKRYLIVLDDFED 159 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv~~ 159 (398)
.+.+.+...+ +||+|++..
T Consensus 175 ~i~~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 175 DIARAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHHHHCS-EEEEECCTT
T ss_pred HHHHHHhhCC-EEEEecccc
Confidence 5666666666 999999983
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.46 E-value=0.00038 Score=64.03 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-.+++|.|++|+|||||++.++..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999765
No 168
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.45 E-value=0.00063 Score=64.50 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC
Q 015891 45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG 124 (398)
Q Consensus 45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~ 124 (398)
.-...|..+|.. +.-..-.++.|.|++|+||||||.+++.. ....-..++|++ .....+.. .+..++....
T Consensus 57 TG~~~LD~~Lg~-GGl~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~-~E~s~~~~-----~a~~~g~d~~ 127 (366)
T 1xp8_A 57 TGSLSLDLALGV-GGIPRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFID-AEHALDPV-----YARALGVNTD 127 (366)
T ss_dssp CSCHHHHHHTSS-SSEETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCGG
T ss_pred CCCHHHHHHhCC-CCccCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEE-CCCChhHH-----HHHHcCCCHH
Confidence 334556666641 02234568999999999999999998765 222223578888 66554432 2455665432
Q ss_pred CCCCcCCCchHHHHHHHHHHHh-CCCcEEEecCCC
Q 015891 125 TTNSFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFE 158 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~ 158 (398)
..........++....+..... ...-+||+|.+.
T Consensus 128 ~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 128 ELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred HceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 2111112345565666655554 356799999876
No 169
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.45 E-value=0.00062 Score=63.99 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCchHHH------HHHHHHHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceEE
Q 015891 131 GQGLAFL------DYVLQQQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLHQ 199 (398)
Q Consensus 131 ~~~~~~~------~~~l~~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~~ 199 (398)
.++++++ +..+.+.+..++-+++||++. |......+...+. ...+..||++||+..+... .++++.
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~---~d~~~~ 325 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA---ADHVIR 325 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG---CSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh---CCEEEE
Confidence 6677776 345666777889999999999 4544444433332 2346689999999876443 245555
Q ss_pred cC
Q 015891 200 LQ 201 (398)
Q Consensus 200 l~ 201 (398)
+.
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.45 E-value=0.00021 Score=68.17 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=63.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceE-EEEecCCcccHHHHHHHHHH--HcCCCCCCCCCcCCCchHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRI-WVCTMSGQKTAESIVKRILK--RLGVDDGTTNSFEGQGLAFLD 138 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-~v~~v~~~~~~~~~~~~il~--~l~~~~~~~~~~~~~~~~~~~ 138 (398)
...+++|+|++|+|||||++.+... +.......+ ++. -.-....... ..++. .++.. .....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e-~~~e~~~~~~-~~~v~Q~~~g~~-----------~~~~~ 199 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE-DPIEYVFKHK-KSIVNQREVGED-----------TKSFA 199 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE-SSCCSCCCCS-SSEEEEEEBTTT-----------BSCSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec-ccHhhhhccC-ceEEEeeecCCC-----------HHHHH
Confidence 4578999999999999999999764 222212333 222 1100000000 00000 01110 11124
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 139 YVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 139 ~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
..++..+...+-+|++|++.+.+......... ..|..|+.|+|+.+....
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~--~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAA--ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH--TTTCEEEECCCCCSHHHH
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH--hcCCEEEEEECcchHHHH
Confidence 57888888899999999999776544332222 346779999998765443
No 171
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.45 E-value=0.00011 Score=68.32 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=32.7
Q ss_pred CCcccc----hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGF----ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR----~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++|++. ...++.+.+++... .......+.|+|++|+|||+||.++++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~-~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQY-PSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHC-SCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHHHHhc-cccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456543 33444555666542 1112578999999999999999999886
No 172
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.44 E-value=0.00047 Score=64.32 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=43.0
Q ss_pred CCCchHHHHHHHHHHHh----CCCcEEEecCCC---CHHHHHHHHhHcC-CCCCCEEEEEeCChHHHH
Q 015891 130 EGQGLAFLDYVLQQQLI----GKRYLIVLDDFE---DMEVCKHLSKVLP-RGYGERLIITSRNEKLTT 189 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~----~k~~LlVLDdv~---~~~~~~~l~~~l~-~~~gs~IIiTTR~~~v~~ 189 (398)
..+.+++++..+.+.+. ..+.+++||++. |....+.+...+. ...+..||+|||+..+..
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~ 286 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME 286 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHh
Confidence 47889999999999886 567899999999 4444444444433 224678999999876544
No 173
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.41 E-value=0.00057 Score=65.15 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHh----cc----------------------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLS----NR----------------------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~----~~----------------------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|.+..++.|...+. .. ........+.|+|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 458999999998887772 10 01123456899999999999999999987
No 174
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.40 E-value=0.00015 Score=76.69 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIF 84 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~ 84 (398)
+...+++|+|++|+|||||.+.+.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHH
Confidence 346799999999999999999874
No 175
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.40 E-value=0.00042 Score=74.29 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCC---CCC-ccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKP---DVK-TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD 138 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~---~~~-~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 138 (398)
..+++|+|++|+|||||++.+.--. ++. .-+.....+. +... ++..++.........+.-..+...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~-v~d~---------I~~rig~~d~~~~~~stf~~em~~ 858 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLT-PIDR---------VFTRLGASDRIMSGESTFFVELSE 858 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEEC-CCSB---------EEEECC---------CHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCC-HHHH---------HHHHcCCHHHHhhchhhhHHHHHH
Confidence 5799999999999999999882110 011 0011111111 1110 001111111100000000111122
Q ss_pred HHHHHHHhCCCcEEEecCCC---CHHH-----HHHHHhHcCCCCCCEEEEEeCChHHHHHhcCC
Q 015891 139 YVLQQQLIGKRYLIVLDDFE---DMEV-----CKHLSKVLPRGYGERLIITSRNEKLTTEMVGE 194 (398)
Q Consensus 139 ~~l~~~l~~k~~LlVLDdv~---~~~~-----~~~l~~~l~~~~gs~IIiTTR~~~v~~~~~~~ 194 (398)
..+...+..++-||+||++. +... +..+. .+....|+++|++||+.+++...+..
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~-~L~~~~g~~vl~~TH~~el~~~~~d~ 921 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVK-ELAETIKCRTLFSTHYHSLVEDYSQN 921 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHH-HHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence 34445567789999999996 4322 22222 22223488999999999988775443
No 176
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=6.7e-05 Score=66.08 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=62.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
.-.++.++|+.|+||||++..++.+ ...+-..++.+. ...... ....+++.++....... ..........+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~-~~~d~r---~~~~i~srlG~~~~~~~---~~~~~~i~~~i 81 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFK-PKIDTR---SIRNIQSRTGTSLPSVE---VESAPEILNYI 81 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE-ECCCGG---GCSSCCCCCCCSSCCEE---ESSTHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEE-eccCch---HHHHHHHhcCCCccccc---cCCHHHHHHHH
Confidence 4578999999999999999888766 322222233332 111111 11234444554432211 12223333333
Q ss_pred HHHHhC-CCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891 142 QQQLIG-KRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 142 ~~~l~~-k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~ 185 (398)
...+.. +.-+||+|++. +.++.+.+....+ .+..||+|-++.
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAE--NGFVVIISGLDK 126 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEECCSB
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh--CCCeEEEEeccc
Confidence 333322 35699999998 3456555554333 378899999844
No 177
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.38 E-value=1.6e-05 Score=78.00 Aligned_cols=54 Identities=7% Similarity=-0.017 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHH--HhCCCcE----EEecC-CCCH---HHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891 131 GQGLAFLDYVLQQQ--LIGKRYL----IVLDD-FEDM---EVCKHLSKVLPRGYGERLIITSRNEK 186 (398)
Q Consensus 131 ~~~~~~~~~~l~~~--l~~k~~L----lVLDd-v~~~---~~~~~l~~~l~~~~gs~IIiTTR~~~ 186 (398)
.+.+++++..+.+. |..++.+ ++||+ ++.. . .+.+...+.. .+..+|++|++..
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~-~~~tviiVth~~~ 299 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK-LNVNIMLVLCSET 299 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH-TTCCEEEEECCSS
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH-hCCCEEEEEccCc
Confidence 56678888888888 9999999 99999 7732 2 2333333321 1344666666654
No 178
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.00089 Score=59.34 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCC------C---------
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDG------T--------- 125 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~------~--------- 125 (398)
..-.++.|.|++|+|||||+.+++.. ....=..++|++ ... ...++...+ ..++.... .
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~-~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~ 94 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVA-LEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTA 94 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE-ccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchh
Confidence 34568999999999999999888654 222223466666 332 223332222 23332210 0
Q ss_pred -C--------C-CcCCCchHHHHHHHHHHHh-CCCcEEEecCCCCH---------HHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891 126 -T--------N-SFEGQGLAFLDYVLQQQLI-GKRYLIVLDDFEDM---------EVCKHLSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 126 -~--------~-~~~~~~~~~~~~~l~~~l~-~k~~LlVLDdv~~~---------~~~~~l~~~l~~~~gs~IIiTTR~~ 185 (398)
. . .....+.......+.+.+. .+.-++|+|.+... .....+.... ...+..||+|++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~-~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 95 GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL-AGTGCTSIFVSQVS 173 (247)
T ss_dssp TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH-HHTTCEEEEEEECC
T ss_pred hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH-HHCCCeEEEEecCC
Confidence 0 0 0001234444555555553 35779999998732 1222222222 23578899998865
Q ss_pred H
Q 015891 186 K 186 (398)
Q Consensus 186 ~ 186 (398)
.
T Consensus 174 ~ 174 (247)
T 2dr3_A 174 V 174 (247)
T ss_dssp -
T ss_pred C
Confidence 3
No 179
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.31 E-value=0.00059 Score=59.89 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=60.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccceEEEEecCCc----------ccHHHHHHHHHHHcC-CCCCCCCCc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPRIWVCTMSGQ----------KTAESIVKRILKRLG-VDDGTTNSF 129 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~v~~v~~~----------~~~~~~~~~il~~l~-~~~~~~~~~ 129 (398)
.-.+++|+|++|+|||||++.+... ... .+...+.+..-... +.....+..+...-. .+......
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~--~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~- 91 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT--QPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG- 91 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH--SCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc--CCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh-
Confidence 4579999999999999999999875 221 22222222211100 111122222222100 00000000
Q ss_pred CCCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 130 EGQGLAFLDYVLQQQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
...+.. ...+...+. +..++||| -|......+...++ .+..|+++|++...+..
T Consensus 92 ~~yg~~--~~~v~~~l~-~G~illLD--LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 92 NYYGTS--REAIEQVLA-TGVDVFLD--IDWQGAQQIRQKMP--HARSIFILPPSKIELDR 145 (219)
T ss_dssp EEEEEE--HHHHHHHHT-TTCEEEEE--CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHH
T ss_pred ccCCCC--HHHHHHHHh-cCCeEEEE--ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHH
Confidence 000000 123444444 35788999 45555555666665 47889999999766543
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.29 E-value=0.00013 Score=73.17 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.0
Q ss_pred CCcccchhhHHHHHHHHhc--cCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSN--RGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~--~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++|.+...+.+.+.+.. .........++|+|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3478888877777654432 012224668999999999999999999886
No 181
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.28 E-value=0.00075 Score=70.06 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCC--CCccccc--eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPD--VKTQFVP--RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLD 138 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~--~~~~F~~--~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 138 (398)
..+++|+|++|+|||||++.+..-.. ....|-. ...+..+.+ ++..++..+.- ....+......
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~----------i~~~~~~~d~l--~~g~S~~~~e~ 643 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG----------IYTRIGASDDL--AGGKSTFMVEM 643 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE----------EEEECCC--------CCSHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH----------hhccCCHHHHH--HhcccHHHHHH
Confidence 46899999999999999998853200 0111111 111110110 00111111100 00123333444
Q ss_pred HHHHHHH--hCCCcEEEecCC---CCH-H--HH-HHHHhHcCCCCCCEEEEEeCChHHHHH
Q 015891 139 YVLQQQL--IGKRYLIVLDDF---EDM-E--VC-KHLSKVLPRGYGERLIITSRNEKLTTE 190 (398)
Q Consensus 139 ~~l~~~l--~~k~~LlVLDdv---~~~-~--~~-~~l~~~l~~~~gs~IIiTTR~~~v~~~ 190 (398)
..+...+ ..++-|++||++ .+. + .. ..+...+.. .|+++|++||+.++...
T Consensus 644 ~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 644 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTAL 703 (765)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTC
T ss_pred HHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh
Confidence 5566666 778999999999 643 1 11 123233322 58899999999887653
No 182
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.24 E-value=0.00072 Score=62.29 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=54.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCcc--ccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH-HHHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQ--FVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFL-DYVL 141 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-~~~l 141 (398)
++.|.|++|+|||||+.+++.. .... =..++|++ .....+.. .++.++..............++. ...+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId-~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYD-SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEE-SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEe-ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 7899999999999999998765 2222 13477887 65555542 37778876543222223455555 3333
Q ss_pred HHH--H-hCCCcEEEecCCC
Q 015891 142 QQQ--L-IGKRYLIVLDDFE 158 (398)
Q Consensus 142 ~~~--l-~~k~~LlVLDdv~ 158 (398)
... + ..++-+||+|-+.
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHHTCCTTCCEEEEEECST
T ss_pred HHHHHhhccCceEEEEeccc
Confidence 222 2 3468899999887
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.20 E-value=0.00052 Score=71.70 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
....+++|+|++|+|||||++.+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3457999999999999999998853
No 184
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00091 Score=61.82 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHhccC----CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC-cccHHHHHHHHHHH
Q 015891 44 ANEELHLQKLLSNRG----TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG-QKTAESIVKRILKR 118 (398)
Q Consensus 44 ~~~~~~l~~~L~~~~----~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~-~~~~~~~~~~il~~ 118 (398)
..-.+.|.+.|.... ......+++|+|++|+||||++..++.. ....-..+.++. ... .......+..++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~-~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAA-ADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEE-ECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEc-cccccHHHHHHHHHHHHH
Confidence 344555666664321 1235679999999999999999999765 222211233443 221 11222334455666
Q ss_pred cCCCCCCCCCcCCCchHHH-HHHHHHHHhCCCcEEEecCCC
Q 015891 119 LGVDDGTTNSFEGQGLAFL-DYVLQQQLIGKRYLIVLDDFE 158 (398)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVLDdv~ 158 (398)
+++...... ........ ...+.+.+..+.-++|+|.+-
T Consensus 158 ~gl~~~~~~--s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHS--EGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCS--TTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecC--CccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 655431111 11122222 235666677778899999886
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.15 E-value=0.0008 Score=63.57 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=61.4
Q ss_pred hhHHHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891 45 NEELHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDD 123 (398)
Q Consensus 45 ~~~~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~ 123 (398)
.-...|..+|. . .-..-.++.|.|++|+||||||.+++.. ....-..++|++ .....+.. .+..++...
T Consensus 46 TG~~~LD~~Lg~G--Gl~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid-~E~s~~~~-----~a~~~g~~~ 115 (356)
T 1u94_A 46 TGSLSLDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDI 115 (356)
T ss_dssp CSCHHHHHHTSSS--SEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCCCCHH-----HHHHTTCCG
T ss_pred CCCHHHHHHhccC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe-CCCCccHH-----HHHHcCCCh
Confidence 33455666663 1 2235678999999999999999998765 222223577887 65554432 245555543
Q ss_pred CCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891 124 GTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE 158 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~ 158 (398)
...........++....+.... ..+.-+||+|.+.
T Consensus 116 ~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 116 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred hheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 2211111233455555444443 3567799999987
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.15 E-value=0.0013 Score=61.24 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=61.5
Q ss_pred HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc---------cc-----cceEEEEecCCcccHHHHH
Q 015891 47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT---------QF-----VPRIWVCTMSGQKTAESIV 112 (398)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~~v~~v~~~~~~~~~~ 112 (398)
...|..+|.. .-..-.++.|+|++|+||||||.+++....... .. ..++|++ ....++...+.
T Consensus 84 ~~~LD~~l~G--Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~-~e~~~~~~~l~ 160 (322)
T 2i1q_A 84 SSELDSVLGG--GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFRPERIM 160 (322)
T ss_dssp CHHHHHHTTS--SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCCHHHHH
T ss_pred ChhHHHhcCC--CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE-CCCCCCHHHHH
Confidence 3455555532 234567999999999999999999876421111 11 3577877 66555554444
Q ss_pred HHHHHHcCCCCC----CCCCcCCCchH---HHHHHHHHHHhC--CCcEEEecCCCC
Q 015891 113 KRILKRLGVDDG----TTNSFEGQGLA---FLDYVLQQQLIG--KRYLIVLDDFED 159 (398)
Q Consensus 113 ~~il~~l~~~~~----~~~~~~~~~~~---~~~~~l~~~l~~--k~~LlVLDdv~~ 159 (398)
.++..++.... ........+.+ .....+...+.. +.-+||+|.+..
T Consensus 161 -~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 161 -QMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp -HHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred -HHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 34455555321 00000112222 233445555543 567999999873
No 187
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.14 E-value=0.001 Score=62.76 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
...+++|+|++|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999999864
No 188
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.11 E-value=0.00025 Score=70.84 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHH-cCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCC----------------CC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIF-HKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVD----------------DG 124 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~-~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~----------------~~ 124 (398)
.-.+++|+|++|+|||||++.+. .. ....-...+++. .... ... .......++.. ..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~G--l~~~~~g~i~v~-g~~~--~~~-~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNG--IIEFDEPGVFVT-FEET--PQD-IIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHCCCEEEEE-SSSC--HHH-HHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEE-EeCC--HHH-HHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 45789999999999999999952 22 111113466666 3221 111 11111111110 00
Q ss_pred --CCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCCC--------HHHHHHHHhHcC--CCCCCEEEEEeCChHH
Q 015891 125 --TTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFED--------MEVCKHLSKVLP--RGYGERLIITSRNEKL 187 (398)
Q Consensus 125 --~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~~--------~~~~~~l~~~l~--~~~gs~IIiTTR~~~v 187 (398)
.......-+...+...+...+ ..++-+++||.+.. ....+.+...+. ...|..||+||++...
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 000011122344455555555 46888999999963 222222322222 2248899999998754
No 189
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.05 E-value=0.00044 Score=60.11 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=29.7
Q ss_pred hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++|.+.+.. ......+++|+|++|+|||||++.+...
T Consensus 7 ~~~~~~~~~~~--~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDP--RQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCT--TCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555543 2356789999999999999999999765
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.01 E-value=0.0012 Score=61.66 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=60.8
Q ss_pred HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc----ccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891 48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ----FVPRIWVCTMSGQKTAESIVKRILKRLGVDD 123 (398)
Q Consensus 48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~ 123 (398)
..|..+|.. .-..-.++.|+|++|+||||||.+++........ -..++|++ ....++...+. .++..++...
T Consensus 94 ~~LD~~L~G--Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~-~e~~~~~~~l~-~~~~~~g~~~ 169 (324)
T 2z43_A 94 QALDGLLAG--GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID-TEGTFRWERIE-NMAKALGLDI 169 (324)
T ss_dssp HHHHHHTTT--SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCCHHHHH-HHHHHTTCCH
T ss_pred hhHHHhcCC--CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHHH-HHHHHhCCCH
Confidence 445555532 2234569999999999999999999765212211 13477887 65555554443 3455565532
Q ss_pred CC----CCCcCCCchH---HHHHHHHHHHh--CCCcEEEecCCCC
Q 015891 124 GT----TNSFEGQGLA---FLDYVLQQQLI--GKRYLIVLDDFED 159 (398)
Q Consensus 124 ~~----~~~~~~~~~~---~~~~~l~~~l~--~k~~LlVLDdv~~ 159 (398)
.. .......+.+ .....+...+. .+.-+||+|.+..
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 170 DNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 10 0000111222 23344455554 4678999999884
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.00 E-value=0.0029 Score=58.96 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|+|++|+||||+++.++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998764
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.99 E-value=0.00082 Score=58.04 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
|++.++.|.+.+... ......+++|.|++|+||||+++.+...
T Consensus 3 ~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 566777788777652 2345689999999999999999999764
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.91 E-value=0.0099 Score=54.56 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=47.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCc-cccceEEEEecC-CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKT-QFVPRIWVCTMS-GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~ 139 (398)
...+++++|++|+||||++..++.. ... .=..+.++. .. ......+.+.......+..... ......+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~-~D~~r~~a~eqL~~~~~~~gl~~~~-----~~~~~~l~~ 175 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFIT-TDTYRIAAVEQLKTYAELLQAPLEV-----CYTKEEFQQ 175 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEE-CCCSSTTHHHHHHHHHTTTTCCCCB-----CSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEe-cCcccchHHHHHHHHHHhcCCCeEe-----cCCHHHHHH
Confidence 4679999999999999999998764 221 101234444 22 2233334444444444443211 122333444
Q ss_pred HHHHHHhCCCcEEEecCC
Q 015891 140 VLQQQLIGKRYLIVLDDF 157 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv 157 (398)
.+.. + .+.-++|+|-.
T Consensus 176 al~~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 176 AKEL-F-SEYDHVFVDTA 191 (296)
T ss_dssp HHHH-G-GGSSEEEEECC
T ss_pred HHHH-h-cCCCEEEEeCC
Confidence 4443 2 56789999954
No 194
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.88 E-value=0.0044 Score=58.21 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=60.9
Q ss_pred HHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCc----cccceEEEEecCCcccHHHHHHHHHHHcCCCC
Q 015891 48 LHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKT----QFVPRIWVCTMSGQKTAESIVKRILKRLGVDD 123 (398)
Q Consensus 48 ~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~ 123 (398)
..|..+|.. .-..-.++.|+|++|+||||||.+++....... .-..++|++ ....++...+ ..++..++...
T Consensus 109 ~~LD~~LgG--Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~-~E~~~~~~~l-~~~~~~~g~~~ 184 (343)
T 1v5w_A 109 QEFDKLLGG--GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFRPDRL-RDIADRFNVDH 184 (343)
T ss_dssp HHHHHHTTS--SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCCHHHH-HHHHHHTTCCH
T ss_pred hhHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCCHHHH-HHHHHHcCCCH
Confidence 445555532 334667999999999999999999876521211 123477887 6555455443 33445555432
Q ss_pred C----CC---CCcCCCchHHHHHHHHHHHh---CCCcEEEecCCCC
Q 015891 124 G----TT---NSFEGQGLAFLDYVLQQQLI---GKRYLIVLDDFED 159 (398)
Q Consensus 124 ~----~~---~~~~~~~~~~~~~~l~~~l~---~k~~LlVLDdv~~ 159 (398)
. .. ..............+...+. .+.-+||+|.+..
T Consensus 185 ~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1 00 00111222223334444444 4567999999873
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.85 E-value=0.0022 Score=57.64 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-+..+|.. ..+....+.|+|++|+|||++|.++++.
T Consensus 90 ~~~l~~~l~~--~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATK--KFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTT--CSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3446666653 2244567999999999999999999885
No 196
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.84 E-value=0.011 Score=55.33 Aligned_cols=155 Identities=10% Similarity=-0.031 Sum_probs=94.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
-..++.++|+.|.||++.+..+.+. .. ..|.....+. +....+..++...+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~--~~~~~~~~~~~~~-~~~~~~~~~l~~~~~------------------------ 69 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQV--AAAQGFEEHHTFS-IDPNTDWNAIFSLCQ------------------------ 69 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHH--HHHHTCCEEEEEE-CCTTCCHHHHHHHHH------------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHH--HHhCCCCeeEEEE-ecCCCCHHHHHHHhc------------------------
Confidence 4678999999999999999988765 21 1232211222 222223222221111
Q ss_pred HHHHHhCCCcEEEecCCCC---HHHHHHHHhHcCC-CCCCEEEEEeCC-------hHHHHHhcCCCceEEcCCCCChhHH
Q 015891 141 LQQQLIGKRYLIVLDDFED---MEVCKHLSKVLPR-GYGERLIITSRN-------EKLTTEMVGEENLHQLQPLSDQESC 209 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~---~~~~~~l~~~l~~-~~gs~IIiTTR~-------~~v~~~~~~~~~~~~l~~L~~~e~~ 209 (398)
..-+.+++-++|+|+++. .+..+.|...+.. .+++.+|+++.+ ..+...+......++..+++. ++.
T Consensus 70 -~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~-~~l 147 (343)
T 1jr3_D 70 -AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ-AQL 147 (343)
T ss_dssp -HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT-THH
T ss_pred -CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH-HHH
Confidence 112235678999999865 2455566666652 346666666543 356666656678899999998 556
Q ss_pred HHHHHhhhCCCCCcchHHHHHHHHHHHHhcCCCchhhhc
Q 015891 210 WLIYRDSVRDKDAQLKSQARKDLEEKLEKLQGQNEDAVN 248 (398)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~c~GlPlai~~ 248 (398)
.....+.+...+...++ +.+..+++.++|...++..
T Consensus 148 ~~~l~~~~~~~g~~i~~---~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 148 PRWVAARAKQLNLELDD---AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHTTCEECH---HHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHhchHHHHHHH
Confidence 66666655444444333 3667788889998877664
No 197
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.83 E-value=0.0035 Score=70.91 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHHHh-ccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891 48 LHLQKLLS-NRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT 126 (398)
Q Consensus 48 ~~l~~~L~-~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~ 126 (398)
..|..+|. - .-...+.+.|+|++|+|||+||.++... ....=..+.|++ +....+... ++.+|.+....
T Consensus 1413 ~~LD~lLG~G--Gi~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~-~e~~~~~l~-----a~~~G~dl~~l 1482 (2050)
T 3cmu_A 1413 LSLDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPIY-----ARKLGVDIDNL 1482 (2050)
T ss_dssp HHHHHHHSSS--SEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEC-TTSCCCHHH-----HHHTTCCTTTC
T ss_pred HHHHHhcCCC--CccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEE-cccccCHHH-----HHHcCCCchhc
Confidence 34666664 1 2346789999999999999999999765 222212366776 666555444 45566443322
Q ss_pred CCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891 127 NSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE 158 (398)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~ 158 (398)
........++....+.+.. ..++.+||+|++.
T Consensus 1483 ~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1483 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 2111233445455555444 3578899999995
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.81 E-value=0.004 Score=57.40 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
...+++|+|++|+|||||++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999999964
No 199
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0053 Score=60.11 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+..+...+.. ..+.+.|.|++|+||||++..+...
T Consensus 30 Q~~av~~~~~~i~~-----~~~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 30 QKNAFNIVMKAIKE-----KKHHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHHS-----SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 33444445555543 1238999999999999999988765
No 200
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.78 E-value=0.003 Score=58.00 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=49.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCCCCcCCCchHHH-HH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTTNSFEGQGLAFL-DY 139 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~-~~ 139 (398)
...+++++|++|+||||++..++.. ....-..+.++. .... ......+..+....++...... .......+ ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~-~d~~~~~~~~ql~~~~~~~~l~~~~~~--~~~~p~~l~~~ 171 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVA-ADTQRPAAREQLRLLGEKVGVPVLEVM--DGESPESIRRR 171 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEE-CCSSCHHHHHHHHHHHHHHTCCEEECC--TTCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEec-CCcccHhHHHHHHHhcccCCeEEEEcC--CCCCHHHHHHH
Confidence 4679999999999999999999765 222212234444 3222 1222223344555554321100 01122222 34
Q ss_pred HHHHHHhCCCcEEEecCC
Q 015891 140 VLQQQLIGKRYLIVLDDF 157 (398)
Q Consensus 140 ~l~~~l~~k~~LlVLDdv 157 (398)
.+......+.-++|+|.+
T Consensus 172 ~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 172 VEEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHHTCCEEEEECC
T ss_pred HHHHHHhCCCCEEEEeCC
Confidence 455554567789999998
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.77 E-value=0.0014 Score=60.90 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+|-...+..+...+..........+++|.|++|+|||||++.+...
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444445555555544323456779999999999999999998654
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.71 E-value=0.0009 Score=56.94 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999886
No 203
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.69 E-value=0.00011 Score=62.78 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=25.8
Q ss_pred CCCcEEEecCCCC--HHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891 147 GKRYLIVLDDFED--MEVCKHLSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 147 ~k~~LlVLDdv~~--~~~~~~l~~~l~~~~gs~IIiTTR~~ 185 (398)
.+..+|++|++.. .++.+.+....+. +..|++|.++.
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeecc
Confidence 3456999999983 4666666555433 77899988754
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.011 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|.++|++|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888754
No 205
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.66 E-value=0.00094 Score=61.39 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcc--C--------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNR--G--------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~--~--------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.++|++..++.+...+... . .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877530 0 0123457889999999999999999886
No 206
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.63 E-value=0.0057 Score=59.09 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988754
No 207
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.62 E-value=0.0014 Score=62.08 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhc-----------cCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSN-----------RGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~-----------~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.++|.+..++.+...+.. .........+.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 469999999998888731 001124567899999999999999999987
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.60 E-value=0.00049 Score=72.24 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=38.7
Q ss_pred CCCCcccchhhHHHHHHHHhccC---------CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 36 PPANVHGFANEELHLQKLLSNRG---------TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 36 ~~~~~vGR~~~~~~l~~~L~~~~---------~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-.+++|.+...+.|.+.+.... .-.....+.++|++|+||||||+.+++.
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 34678899988888888765310 1123567899999999999999999886
No 209
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.57 E-value=0.0074 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|+|++|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998765
No 210
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0011 Score=56.06 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|+|++|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 211
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.54 E-value=0.0013 Score=56.51 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|+|++|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 212
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.52 E-value=0.001 Score=56.60 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++++|+|++|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.47 E-value=0.0013 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999886
No 214
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.46 E-value=0.0031 Score=57.81 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
......+|+|.|++|+|||||++.+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999998765
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.46 E-value=0.0015 Score=56.56 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|.|++|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999774
No 216
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.45 E-value=0.0019 Score=53.47 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-.+++|.|++|+|||||++.++.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999775
No 217
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.43 E-value=0.0019 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|.|++|+|||||++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999876
No 218
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.42 E-value=0.0017 Score=56.28 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-.+++|+|++|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999764
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.41 E-value=0.0018 Score=55.02 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 220
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.41 E-value=0.0012 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|+|+|++|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 221
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.39 E-value=0.0035 Score=58.77 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred ccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 41 HGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
|..+...+.+...+......+....+.|+|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4445566666666654223455677999999999999999999775
No 222
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.39 E-value=0.0017 Score=55.97 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.0017 Score=54.03 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRI 83 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v 83 (398)
.+|+|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 224
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.35 E-value=0.0024 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999765
No 225
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.34 E-value=0.0031 Score=57.68 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
......+.|.|++|+||||+++.+...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999875
No 226
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0018 Score=53.84 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|+|.|++|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 227
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.32 E-value=0.0021 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999886
No 228
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.32 E-value=0.0026 Score=62.84 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|++..++.+...+.. ..-+.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~------~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH------TCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhc------CCeeEeecCchHHHHHHHHHHHHH
Confidence 5689999999988887765 247899999999999999999986
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.32 E-value=0.0016 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.654 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+.++|+|++|+|||||++.+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999764
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.32 E-value=0.016 Score=53.26 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=49.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC-CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS-GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
..+++++|++|+||||++..++.. ....-..+.++. .. ........+..+....+..-.... ...+........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~-~D~~r~~a~~ql~~~~~~~~v~v~~~~--~~~~p~~~~~~~ 172 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVG-ADVYRPAALEQLQQLGQQIGVPVYGEP--GEKDVVGIAKRG 172 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEE-CCCSSSHHHHHHHHHHHHHTCCEECCT--TCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEe-cCCCCHHHHHHHHHHhccCCeEEEecC--CCCCHHHHHHHH
Confidence 679999999999999999998765 222212244444 32 223333344455555554321110 112223332223
Q ss_pred HHHHh-CCCcEEEecCCC
Q 015891 142 QQQLI-GKRYLIVLDDFE 158 (398)
Q Consensus 142 ~~~l~-~k~~LlVLDdv~ 158 (398)
...+. ..--++|+|-+-
T Consensus 173 l~~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 173 VEKFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHHHTTCSEEEEECCC
T ss_pred HHHHHhCCCCEEEEeCCC
Confidence 33333 455699999864
No 231
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.30 E-value=0.0021 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.27 E-value=0.0021 Score=55.25 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|++|+||||+++.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.26 E-value=0.0023 Score=55.06 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 234
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.21 E-value=0.0054 Score=56.65 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|.|++|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999774
No 235
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.20 E-value=0.0029 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|.|++|+|||||++.+...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.19 E-value=0.0076 Score=56.30 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=43.1
Q ss_pred cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHH
Q 015891 42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKR 118 (398)
Q Consensus 42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~ 118 (398)
|...-+..|..++. +-..-.++.|.|.+|+||||||..++.. ....=..++|++ -..+..++...++..
T Consensus 28 gi~TG~~~LD~~~g---Gl~~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fS---lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS---GFNKGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFS---LEMSAEQLALRALSD 96 (338)
T ss_dssp SBCCSCHHHHHHHC---SBCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEE---SSSCHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc---CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe---CCCCHHHHHHHHHHH
Confidence 33344455555553 2345578999999999999999999776 222112355655 345556666666554
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.17 E-value=0.0022 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-.+++|+|++|+|||||++.+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 238
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.16 E-value=0.0032 Score=58.27 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....+++|.|++|+|||||++.+..-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 356789999999999999999999763
No 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.15 E-value=0.0028 Score=56.47 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|+|++|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999843
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.15 E-value=0.0018 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.|.|+||+|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999999876
No 241
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.14 E-value=0.028 Score=55.01 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|+|++|+|||||++.++..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34679999999999999999999765
No 242
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.13 E-value=0.014 Score=58.64 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++.|.|++|+||||++..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 478899999999999999998764
No 243
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.13 E-value=0.012 Score=54.48 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=43.3
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHH
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKR 118 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~ 118 (398)
...-+..|..++ . +-..-.++.|.|.+|+||||||..++.. ....-..++|++ .. .+..++...++..
T Consensus 51 i~TG~~~LD~~l-g--Gl~~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~s-lE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 51 VPSGFTELDRMT-Y--GYKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS-LE--MGKKENIKRLIVT 118 (315)
T ss_dssp BCCSCHHHHHHH-S--SBCTTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEE-SS--SCHHHHHHHHHHH
T ss_pred ccCChHHHHhhc-C--CCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEE-CC--CCHHHHHHHHHHH
Confidence 333444555555 2 3355678999999999999999998765 111114566766 33 5566666666654
No 244
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.11 E-value=0.0033 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 245
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.11 E-value=0.0041 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|+|++|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999876
No 246
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.10 E-value=0.013 Score=50.08 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=64.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCC--cccHHHHHHHHHHHcCCCC--CC-CCCcCC-----
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSG--QKTAESIVKRILKRLGVDD--GT-TNSFEG----- 131 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~--~~~~~~~~~~il~~l~~~~--~~-~~~~~~----- 131 (398)
....|.|++.+|.||||+|-.+.-+ ...+=..++++.++.. ......++.. ++... .. ......
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHH
Confidence 3467778888889999999888654 1111112444442322 2223333333 22100 00 000000
Q ss_pred --CchHHHHHHHHHHHhC-CCcEEEecCCCCH-----HHHHHHHhHcC-CCCCCEEEEEeCChH--HHHHhcCCCceEEc
Q 015891 132 --QGLAFLDYVLQQQLIG-KRYLIVLDDFEDM-----EVCKHLSKVLP-RGYGERLIITSRNEK--LTTEMVGEENLHQL 200 (398)
Q Consensus 132 --~~~~~~~~~l~~~l~~-k~~LlVLDdv~~~-----~~~~~l~~~l~-~~~gs~IIiTTR~~~--v~~~~~~~~~~~~l 200 (398)
...........+.+.+ +--|||||++... -..+.+...+. .-....||+|+|+.. +.. -.+.+-++
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e---~AD~VTem 177 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD---LADTVSEL 177 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH---HCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH---hCcceeee
Confidence 1112223334444444 4569999998521 11112222332 334678999999853 222 23556666
Q ss_pred CCCCC
Q 015891 201 QPLSD 205 (398)
Q Consensus 201 ~~L~~ 205 (398)
.+...
T Consensus 178 ~~vkH 182 (196)
T 1g5t_A 178 RPVKH 182 (196)
T ss_dssp CCSCC
T ss_pred cceeC
Confidence 65554
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.08 E-value=0.0029 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+.|.|+|++|+||||+++.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.07 E-value=0.0022 Score=55.11 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999775
No 249
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0043 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999876
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.04 E-value=0.004 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.305 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|.|.|++|+||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 251
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.02 E-value=0.028 Score=48.96 Aligned_cols=95 Identities=19% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEE-------ecCCcccHHHHHHHHHHHcCCCCCCCCCcCC
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVC-------TMSGQKTAESIVKRILKRLGVDDGTTNSFEG 131 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~-------~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~ 131 (398)
.-.+.++|.|.|++|+||||.|+.+... . .| ..++ .+............++..=.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~--~--g~---~hIstGdllR~~i~~~t~lg~~~~~~~~~G~l---------- 87 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK--F--HF---NHLSSGDLLRAEVQSGSPKGKELKAMMERGEL---------- 87 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH--H--CC---EEECHHHHHHHHHTTCCHHHHHHHHHHHHTCC----------
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH--H--CC---ceEcHHHHHHHHHHcCCchHHHHHHHHhcCCC----------
Confidence 3356889999999999999999999876 1 11 1221 011222333344444433111
Q ss_pred CchHHHHHHHHHHHh---CCCcEEEecCCC-CHHHHHHHHhHc
Q 015891 132 QGLAFLDYVLQQQLI---GKRYLIVLDDFE-DMEVCKHLSKVL 170 (398)
Q Consensus 132 ~~~~~~~~~l~~~l~---~k~~LlVLDdv~-~~~~~~~l~~~l 170 (398)
-..+-....+...+. ....-+|||..- +..+.+.|...+
T Consensus 88 Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~ 130 (217)
T 3umf_A 88 VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEV 130 (217)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhC
Confidence 112223344444442 244568899964 677777665544
No 252
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.01 E-value=0.0053 Score=54.62 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+.++...+.. .......|+|.|++|+||||+|+.+...
T Consensus 12 ~~~~~~~~~~~~~--~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 12 IDLLNELKRRYAC--LSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHH--HTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444444332 2235678999999999999999999765
No 253
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.00 E-value=0.0033 Score=54.99 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+|+|+|++|+||||+++.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 254
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.00 E-value=0.0032 Score=54.14 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..|+|.|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.96 E-value=0.003 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999876
No 256
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.96 E-value=0.0037 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..|.|.|++|+||||+++.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 257
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.95 E-value=0.0039 Score=53.57 Aligned_cols=25 Identities=16% Similarity=0.507 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++++|+|++|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4678999999999999999999865
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0044 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999999874
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.94 E-value=0.029 Score=52.99 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=59.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQ 142 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~ 142 (398)
-..++|+|++|+|||||++.+..- +.. -...+.+.... ...... .-..++.-..................++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~--~~~-~~g~I~ie~~~-e~~~~~----~~~~v~~v~~q~~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE--IPF-DQRLITIEDVP-ELFLPD----HPNHVHLFYPSEAKEEENAPVTAATLLR 246 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT--SCT-TSCEEEEESSS-CCCCTT----CSSEEEEECC----------CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--CCC-CceEEEECCcc-ccCccc----cCCEEEEeecCccccccccccCHHHHHH
Confidence 458999999999999999999876 222 23445544221 110000 0000000000000000001123456677
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891 143 QQLIGKRYLIVLDDFEDMEVCKHLSKVLPRGYGERLIITSRNEK 186 (398)
Q Consensus 143 ~~l~~k~~LlVLDdv~~~~~~~~l~~~l~~~~gs~IIiTTR~~~ 186 (398)
..+...+-.+++|++...+..+.+.. ++.+ ...++.|+|...
T Consensus 247 ~~l~~~pd~~l~~e~r~~~~~~~l~~-l~~g-~~~~l~t~H~~~ 288 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGGEAYDFINV-AASG-HGGSITSCHAGS 288 (361)
T ss_dssp HHTTSCCSEEEESCCCSTHHHHHHHH-HHTT-CCSCEEEEECSS
T ss_pred HHHhcCCCEEEEcCchHHHHHHHHHH-HhcC-CCeEEEEECCCC
Confidence 77888888999999997666665543 3333 223566766554
No 260
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.94 E-value=0.0059 Score=52.58 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=30.8
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-+..+..++.. -++...+.|+|++|+||||+|.++++.
T Consensus 41 ~~~f~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 41 FITFLGALKSFLKG---TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 33446667777753 234457999999999999999999876
No 261
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.94 E-value=0.0039 Score=55.90 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999875
No 262
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.92 E-value=0.032 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHH
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIF 84 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~ 84 (398)
.+.+.|.|+.|+||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3689999999999998766553
No 263
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.91 E-value=0.0027 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=16.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHH-cC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIF-HK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~-~~ 86 (398)
-.+++|+|++|+|||||++.+. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998 54
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.90 E-value=0.0048 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|++|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 265
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.90 E-value=0.017 Score=65.50 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=69.5
Q ss_pred cccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHc
Q 015891 40 VHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRL 119 (398)
Q Consensus 40 ~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l 119 (398)
..+...-...|..+|.. +.-..-.++.|.|++|+||||||.+++.. ....=..++|++ .....+.. .++.+
T Consensus 361 ~~~I~TG~~~LD~lLG~-GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis-~E~s~~~~-----~a~~l 431 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGA-GGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKL 431 (2050)
T ss_dssp CCEECCSCHHHHHHHSS-SSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEC-TTSCCCHH-----HHHHT
T ss_pred CceeeCCCHHHHHHhcc-CCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEE-cCCCHHHH-----HHHHc
Confidence 34444555667777741 02345779999999999999999999776 222223577877 65555532 25667
Q ss_pred CCCCCCCCCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891 120 GVDDGTTNSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE 158 (398)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~ 158 (398)
+.+............++....+.+.. ..+.-+||+|.+.
T Consensus 432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 76543332222345566666665544 3567899999987
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.90 E-value=0.0039 Score=52.78 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999775
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.90 E-value=0.017 Score=50.00 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=49.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecC--------CcccHHHHHHHHHHHcCCCCCCCCCcCCCchHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMS--------GQKTAESIVKRILKRLGVDDGTTNSFEGQGLAF 136 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~--------~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 136 (398)
+|.|.|++|+||+|.|+.+... |. ...++ .+ .........+.++..=.+ -.-+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~g-~~~is-tGdllR~~i~~~t~lg~~~~~~~~~G~l----------vpd~i 63 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------KG-FVHIS-TGDILREAVQKGTPLGKKAKEYMERGEL----------VPDDL 63 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------HC-CEEEE-HHHHHHHHHHHTCHHHHHHHHHHHHTCC----------CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HC-CeEEc-HHHHHHHHHHhcChhhhhHHHHHhcCCc----------CCHHH
Confidence 5789999999999999999876 11 12222 11 111222233333332111 11233
Q ss_pred HHHHHHHHHhCCCcEEEecCCC-CHHHHHHHHhHc
Q 015891 137 LDYVLQQQLIGKRYLIVLDDFE-DMEVCKHLSKVL 170 (398)
Q Consensus 137 ~~~~l~~~l~~k~~LlVLDdv~-~~~~~~~l~~~l 170 (398)
....+...+..... +|||..= +..+.+.|...+
T Consensus 64 v~~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~~l 97 (206)
T 3sr0_A 64 IIALIEEVFPKHGN-VIFDGFPRTVKQAEALDEML 97 (206)
T ss_dssp HHHHHHHHCCSSSC-EEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCc-eEecCCchhHHHHHHHHhhH
Confidence 45566677765544 7889864 677777665554
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.89 E-value=0.0044 Score=52.55 Aligned_cols=24 Identities=42% Similarity=0.567 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+|+|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
No 269
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.87 E-value=0.0055 Score=52.59 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|+.|+||||+++.+...
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.86 E-value=0.005 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|.|++|+||||+++.+...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.85 E-value=0.0038 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+++|+|++|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 272
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.82 E-value=0.0038 Score=52.50 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|.|+|++|+||||+++.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999875
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.80 E-value=0.0046 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=21.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|+.|+||||+++.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.79 E-value=0.0046 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999876
No 275
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.78 E-value=0.0044 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|.|.|++|+||||+++.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 276
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.75 E-value=0.0061 Score=52.28 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 277
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.0037 Score=53.48 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=56.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
.-.+..++|+.|+||||.+..+.++.. ...+...++-. .-.. ..-...+.+.++....... . .... .+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~-~~d~---r~~~~~i~s~~g~~~~a~~-~--~~~~----~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKP-EIDN---RYSKEDVVSHMGEKEQAVA-I--KNSR----EI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEE-C----------CEEECTTSCEEECEE-E--SSST----HH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEe-ccCc---cchHHHHHhhcCCceeeEe-e--CCHH----HH
Confidence 347899999999999998888866521 11222222221 1100 0001122223332211110 0 1111 23
Q ss_pred HHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCCh
Q 015891 142 QQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNE 185 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~ 185 (398)
...+.++--+|++|++. +.++++.+....+ .+..||+|.++.
T Consensus 75 ~~~~~~~~dvViIDEaqfl~~~~v~~l~~l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 75 LKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAE--SGRRVICAGLDM 118 (191)
T ss_dssp HHHCCTTCSEEEECSGGGSCTHHHHHHHHHHH--TTCEEEEEECSB
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHHHHHHHh--CCCEEEEEeccc
Confidence 33333334699999987 4566666655443 277899998865
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.74 E-value=0.0051 Score=52.29 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|+|.|++|+||||+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 279
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.73 E-value=0.0056 Score=54.76 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|+|.|++|+||||+++.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999865
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.72 E-value=0.016 Score=64.92 Aligned_cols=103 Identities=18% Similarity=0.133 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCC
Q 015891 47 ELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTT 126 (398)
Q Consensus 47 ~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~ 126 (398)
...|..+|.. +.-..-+++.|.|++|+||||||.+++.. ....=..++|++ .....+.. .++.++.+....
T Consensus 368 i~~LD~lLg~-GGl~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis-~E~s~~~~-----~a~~lGvd~~~L 438 (1706)
T 3cmw_A 368 SLSLDIALGA-GGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDIDNL 438 (1706)
T ss_dssp CHHHHHHTSS-SSEETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEC-TTSCCCHH-----HHHHTTCCGGGC
T ss_pred cHHHHHHhcc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEE-ccCchHHH-----HHHHcCCCHHHe
Confidence 4455555530 02245679999999999999999999765 222223577887 66555542 256676654332
Q ss_pred CCcCCCchHHHHHHHHHHH-hCCCcEEEecCCC
Q 015891 127 NSFEGQGLAFLDYVLQQQL-IGKRYLIVLDDFE 158 (398)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~l-~~k~~LlVLDdv~ 158 (398)
........++....+.... ..+.-+||+|-+.
T Consensus 439 ~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 439 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 2222344566666555544 3467899999987
No 281
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0065 Score=54.33 Aligned_cols=27 Identities=33% Similarity=0.291 Sum_probs=23.7
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
......+.|.|++|+||||+|+.+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999876
No 282
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.69 E-value=0.0063 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999774
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0064 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
...+++|+|++|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999864
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.68 E-value=0.012 Score=59.77 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.++|.+..++.+...+.. ...+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~------g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ------KRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT------TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccC------CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 5689999999988888865 258999999999999999999886
No 285
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.67 E-value=0.0073 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|+|.|++|+||||+++.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 286
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.66 E-value=0.2 Score=47.63 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=35.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|....+.++.+.+... ......|.|.|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI--SCAECPVLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--TTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh--cCCCCCeEEecCCCcCHHHHHHHHHHh
Confidence 35778777788877776652 222344699999999999999999765
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.65 E-value=0.0065 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|.|++|+||||+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 288
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.62 E-value=0.0087 Score=57.94 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhcc----------CCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNR----------GTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~----------~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|.++..+.|...+... ......+-+.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999888887776320 00113466999999999999999999887
No 289
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.61 E-value=0.044 Score=53.01 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhccC-----CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 45 NEELHLQKLLSNRG-----TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 45 ~~~~~l~~~L~~~~-----~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-.++|.++|.... .....++|.++|.+|+||||++..++..
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455666665311 1135689999999999999999998765
No 290
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.60 E-value=0.0078 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999774
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.59 E-value=0.0082 Score=58.15 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|+|+|++|+||||++..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999765
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.59 E-value=0.0058 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+|+|.|++|+||||+++.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 293
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.58 E-value=0.0069 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.57 E-value=0.0051 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..|+|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 295
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.57 E-value=0.0058 Score=55.32 Aligned_cols=21 Identities=48% Similarity=0.798 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHc
Q 015891 65 AIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.++|+|++|+|||||++.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999965
No 296
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.56 E-value=0.0071 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 297
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.55 E-value=0.013 Score=51.10 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 44 ANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 44 ~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++..+.+...+.. .....|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~----~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK----HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445556666543 45788999999999999999999876
No 298
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.55 E-value=0.0097 Score=51.58 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=53.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVL 141 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l 141 (398)
.-.+..++|+-|+||||.+...+.+ ....-..++.+. .... ...-...+.+.++........ .... .+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r--~~~~g~kVli~k-~~~d--~R~ge~~i~s~~g~~~~a~~~---~~~~----~~ 94 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRR--TQFAKQHAIVFK-PCID--NRYSEEDVVSHNGLKVKAVPV---SASK----DI 94 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEE-CC-------------------CCEEEC---SSGG----GG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE-eccC--CcchHHHHHhhcCCeeEEeec---CCHH----HH
Confidence 4568889999999999988887665 222211222222 1111 111122345555544321111 1111 11
Q ss_pred HHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEeCChH
Q 015891 142 QQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITSRNEK 186 (398)
Q Consensus 142 ~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTTR~~~ 186 (398)
...+.++--+|++|++. +.++++.+....+ .+..||+|-++.+
T Consensus 95 ~~~~~~~~dvViIDEaQF~~~~~V~~l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 95 FKHITEEMDVIAIDEVQFFDGDIVEVVQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp GGGCCSSCCEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEECSBC
T ss_pred HHHHhcCCCEEEEECcccCCHHHHHHHHHHhh--CCCEEEEEecccc
Confidence 12222334599999998 4556665554433 3778999999653
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.54 E-value=0.0067 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|++|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 300
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.53 E-value=0.0068 Score=58.26 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
...+++|+|++|+|||||++.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.52 E-value=0.007 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 302
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.52 E-value=0.0064 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+|+|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 303
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.51 E-value=0.0045 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++|+|++|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.50 E-value=0.0072 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|.|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999875
No 305
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.49 E-value=0.0047 Score=51.93 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=17.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 306
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.48 E-value=0.037 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++++|++|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999765
No 307
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.47 E-value=0.082 Score=52.18 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=32.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccceEEEEecCCcccHHHHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~~v~~v~~~~~~~~~~~~il 116 (398)
.-.++.|.|.+|+||||||.+++.. .... =..++|++ .. .+..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s-~E--~s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAM-LE--ESVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEE-SS--SCHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEe-cc--CCHHHHHHHHH
Confidence 4568999999999999999999776 2222 12466766 43 33444544443
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.47 E-value=0.0074 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 309
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.011 Score=51.30 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.6
Q ss_pred cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.+...+.+...+.. .....++|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~----~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE----SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH----HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc----cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444556666666643 46789999999999999999999775
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.43 E-value=0.0074 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=22.6
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
-..-.+++|+|++|+|||||++.+..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 34567899999999999999999864
No 311
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.39 E-value=0.0077 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|.|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 312
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.39 E-value=0.0083 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|.|+.|+||||+++.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 313
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.37 E-value=0.0089 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999987
No 314
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.36 E-value=0.0084 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.36 E-value=0.0083 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999765
No 316
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.34 E-value=0.08 Score=52.13 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...++|+|+|.+|+||||++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999753
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.33 E-value=0.009 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+.+|+|++|+|||||+.+++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999965
No 318
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.33 E-value=0.01 Score=51.33 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|.|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999775
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.32 E-value=0.011 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.475 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++|+|++|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568999999999999999999876
No 320
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.32 E-value=0.01 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 321
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.31 E-value=0.0086 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+++|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999998764
No 322
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.30 E-value=0.0082 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|.|++|+||||+++.+...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999875
No 323
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.27 E-value=0.0092 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999775
No 324
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.26 E-value=0.011 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.675 Sum_probs=22.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999973
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.24 E-value=0.01 Score=51.93 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.|.+.|.||+||||+|..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 45888999999999998888765
No 326
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.18 E-value=0.0051 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
No 327
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.16 E-value=0.02 Score=54.29 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.....++|+|++|+|||||++.+...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345679999999999999999999864
No 328
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.15 E-value=0.0086 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 329
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.10 E-value=0.016 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|.+|+|||||++.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999875
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.10 E-value=0.0087 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|++|+||||+++.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999875
No 331
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.06 E-value=0.041 Score=53.45 Aligned_cols=93 Identities=17% Similarity=0.281 Sum_probs=50.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCccc-HHHHHHHHHHHcCCCCCC--CCCcCCCchHHH--
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKT-AESIVKRILKRLGVDDGT--TNSFEGQGLAFL-- 137 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~-~~~~~~~il~~l~~~~~~--~~~~~~~~~~~~-- 137 (398)
..++|+|++|+|||||++.+..+ ....+ ..++++. +.+... ..+++.++...=.+.... ........+.+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~-iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~ 228 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAG-VGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV 228 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEE-ESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEee-eccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHH
Confidence 46899999999999999999776 33322 2344554 555443 334444444321010000 000011122222
Q ss_pred ---HHHHHHHHh---CCCcEEEecCCCC
Q 015891 138 ---DYVLQQQLI---GKRYLIVLDDFED 159 (398)
Q Consensus 138 ---~~~l~~~l~---~k~~LlVLDdv~~ 159 (398)
...+++++. ++..|+++||+..
T Consensus 229 ~~~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 229 ALTGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 223455543 5789999999984
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.03 E-value=0.013 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...++|+|++|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999876
No 333
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.03 E-value=0.084 Score=55.04 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=23.7
Q ss_pred hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..+.|...+.. ...+.|+|+.|+||||++..+..
T Consensus 98 q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 98 QRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp GHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHH
Confidence 34445555532 35799999999999997666643
No 334
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.025 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....+|+|+|.+|+|||||+..+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998654
No 335
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.01 E-value=0.012 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999775
No 336
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.96 E-value=0.033 Score=62.36 Aligned_cols=90 Identities=16% Similarity=0.085 Sum_probs=62.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
++-++|-|+|+.|+||||||.++... ....=...+|+. .....+.. +++.+|.+............++....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~-~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFID-AEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEC-TTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEe-cCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHH
Confidence 34589999999999999999999765 333334577877 66666654 27888887654433333455666666
Q ss_pred HHHHHhC-CCcEEEecCCC
Q 015891 141 LQQQLIG-KRYLIVLDDFE 158 (398)
Q Consensus 141 l~~~l~~-k~~LlVLDdv~ 158 (398)
+...++. ..-+||+|-|.
T Consensus 1501 ~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHTCCSEEEESCST
T ss_pred HHHHHHcCCCCEEEEccHH
Confidence 6666644 67899999886
No 337
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.96 E-value=0.013 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|.|++|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999765
No 338
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.95 E-value=0.015 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+..++|+|.|.||+||||.+..+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 56899999999999999988877543
No 339
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.92 E-value=0.063 Score=52.33 Aligned_cols=97 Identities=12% Similarity=0.225 Sum_probs=58.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC---------CCc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDDGTT---------NSF 129 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~---------~~~ 129 (398)
.+-..++|+|.+|+|||+|+..+.++ +. .+-+.++++. +.+.. ....++.++...=.++.... ...
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~-iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~ 239 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGG-VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQM 239 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEE-ESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECT
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEE-cccCcHHHHHHHHhhhcccccccccccccceEEEEeCC
Confidence 45567899999999999999999876 32 2335667776 77654 45556666665422221000 000
Q ss_pred CCCc-----hHHHHHHHHHHHhC---CCcEEEecCCCCH
Q 015891 130 EGQG-----LAFLDYVLQQQLIG---KRYLIVLDDFEDM 160 (398)
Q Consensus 130 ~~~~-----~~~~~~~l~~~l~~---k~~LlVLDdv~~~ 160 (398)
+... .......+++++++ +..|+++||+...
T Consensus 240 d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 240 NEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp TSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1111 12223445667765 6899999999843
No 340
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.89 E-value=0.012 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999876
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.88 E-value=0.015 Score=55.00 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...++|+|++|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999765
No 342
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.88 E-value=0.014 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|.|++|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.85 E-value=0.025 Score=47.39 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||++.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 344
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.84 E-value=0.0039 Score=58.94 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-..++|+|++|+|||||++.+.+.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHH
Confidence 45668999999999999999988764
No 345
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.83 E-value=0.044 Score=53.22 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC-ccccceEEEEecCCcc-cHHHHHHHHHHHcCCCC-----CCC---CCcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK-TQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDD-----GTT---NSFE 130 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~-----~~~---~~~~ 130 (398)
.+-..++|+|.+|+|||+|+..+.++ +. .+-+.++++. +.+.. ...++++++...=.+.. ... ...+
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~--~~~~~~~v~V~~~-iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d 227 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINN--VAKAHGGYSVFAG-VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMN 227 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH--TTTTCSSEEEEEE-ESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTT
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHh--hHhhCCCEEEEEE-CCCcchHHHHHHHHhhhccccccccCCceEEEEEECCC
Confidence 45567899999999999999999876 22 2224456665 66553 45566666665433320 000 0011
Q ss_pred CCchHH-----HHHHHHHHHh---CCCcEEEecCCCCH
Q 015891 131 GQGLAF-----LDYVLQQQLI---GKRYLIVLDDFEDM 160 (398)
Q Consensus 131 ~~~~~~-----~~~~l~~~l~---~k~~LlVLDdv~~~ 160 (398)
.....+ ....++++++ ++..||++|++...
T Consensus 228 ~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 228 EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 111222 2233455554 47899999999843
No 346
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=94.83 E-value=0.059 Score=43.84 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHH------HHHhCCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceE
Q 015891 130 EGQGLAFLDYVLQ------QQLIGKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLH 198 (398)
Q Consensus 130 ~~~~~~~~~~~l~------~~l~~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~ 198 (398)
..+++++++..+. +.+..++-+++||++. |....+.+...+. ...|..||++||+..+.. + .++++
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~-~--~d~ii 133 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-A--ADHVI 133 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG-G--CSEEE
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH-h--CCEEE
Confidence 3678888887664 6778889999999999 4444444444443 223678999999986433 2 24555
Q ss_pred EcC
Q 015891 199 QLQ 201 (398)
Q Consensus 199 ~l~ 201 (398)
.+.
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 347
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.82 E-value=0.013 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|+.|+|||||++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999865
No 348
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.82 E-value=0.018 Score=57.48 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+++|+|++|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4578999999999999999999876
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.80 E-value=0.015 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 350
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.79 E-value=0.014 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 351
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.79 E-value=0.029 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999887
No 352
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.75 E-value=0.023 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.+++|+|++|+|||||++.+. .
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CcEEEEECCCCCCHHHHHHHHH-H
Confidence 3689999999999999999998 6
No 353
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.74 E-value=0.18 Score=48.86 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=43.2
Q ss_pred hHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-ccceEEEEecCCcccHHHHHHHHHHH-cCCC
Q 015891 46 EELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FVPRIWVCTMSGQKTAESIVKRILKR-LGVD 122 (398)
Q Consensus 46 ~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~~v~~v~~~~~~~~~~~~il~~-l~~~ 122 (398)
-+..|..++ . +-..-.++.|.|.+|+||||||..++.. .... =..++|++ . ..+..++...++.. .+..
T Consensus 186 G~~~LD~~l-g--Gl~~G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~s-l--E~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 186 GFKELDQLI-G--TLGPGSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYS-L--EMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp SCHHHHHHH-C--CCCTTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEE-S--SSCHHHHHHHHHHHHTTCC
T ss_pred CCHhhhhhc-C--CcCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEE-C--CCCHHHHHHHHHHHHcCCC
Confidence 344555555 2 3345678999999999999999999765 2211 12466665 4 34455666666543 3444
No 354
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.72 E-value=0.15 Score=59.76 Aligned_cols=132 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCc-----CCCchHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSF-----EGQGLAFLD 138 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~-----~~~~~~~~~ 138 (398)
+-+.++|++|+|||++|+.+... ... .....+. ++...+...++..+-..+.......... .
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~--~~~--~~~~~in-fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~-------- 1334 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRN--SSL--YDVVGIN-FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSD-------- 1334 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS--CSS--CEEEEEE-CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSS--------
T ss_pred CeEEEECCCCCCHHHHHHHHHhc--CCC--CceEEEE-eecCCCHHHHHHHHHHHhhhccccCCccccCCCC--------
Q ss_pred HHHHHHHhCCCcEEEecCCC----CH----HHHHHHHhHcCCCC-------------CCEEEEEeCCh------HHHHHh
Q 015891 139 YVLQQQLIGKRYLIVLDDFE----DM----EVCKHLSKVLPRGY-------------GERLIITSRNE------KLTTEM 191 (398)
Q Consensus 139 ~~l~~~l~~k~~LlVLDdv~----~~----~~~~~l~~~l~~~~-------------gs~IIiTTR~~------~v~~~~ 191 (398)
+++.++.+||+. +. ...+.++..+..+. +..+|.++-.. .+...+
T Consensus 1335 --------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1335 --------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp --------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred --------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Q ss_pred cCCCceEEcCCCCChhHHHHHHHhhh
Q 015891 192 VGEENLHQLQPLSDQESCWLIYRDSV 217 (398)
Q Consensus 192 ~~~~~~~~l~~L~~~e~~~~l~~~~~ 217 (398)
.....++.+...+. ++...+|...+
T Consensus 1407 lRrf~vi~i~~P~~-~~l~~I~~~il 1431 (2695)
T 4akg_A 1407 TRHAAILYLGYPSG-KSLSQIYEIYY 1431 (2695)
T ss_dssp HTTEEEEECCCCTT-THHHHHHHHHH
T ss_pred hheeeEEEeCCCCH-HHHHHHHHHHH
No 355
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.72 E-value=0.03 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.1
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
-....+++|+|++|+|||||++.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999975
No 356
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.029 Score=47.26 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999876
No 357
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.68 E-value=0.11 Score=50.69 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCCccc-cceEEEEecCCcccHHHHHHHHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQF-VPRIWVCTMSGQKTAESIVKRIL 116 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~~v~~v~~~~~~~~~~~~il 116 (398)
..-.++.|.|.+|+|||||+..++.. ..... ..++|++ .. .+..++...++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s-~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFS-LE--MSAQQLVMRML 252 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEE-SS--SCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEE-CC--CCHHHHHHHHH
Confidence 45679999999999999999999776 32211 2466665 33 34455555544
No 358
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.68 E-value=0.022 Score=52.91 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|.|+|+.|+|||||+..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999987
No 359
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.68 E-value=0.015 Score=48.79 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 360
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.67 E-value=0.0082 Score=54.92 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=19.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999764
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.67 E-value=0.018 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|.|.|++|+||||+++.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999876
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.66 E-value=0.017 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999876
No 363
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.66 E-value=0.022 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..+.+|+|++|+|||||..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998853
No 364
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.65 E-value=0.018 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 365
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.64 E-value=0.019 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|.|++|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45668999999999999999999874
No 366
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.62 E-value=0.018 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999875
No 367
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.61 E-value=0.031 Score=53.80 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=47.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCccccc-eEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVP-RIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
...+++|+|++|+|||||++.+... +... .. +.++. -.-...... ..+.. ............
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~--l~~~-~g~I~~~e-d~ie~~~~~-----~~q~~--------v~~~~g~~f~~~ 228 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE--LNSS-ERNILTVE-DPIEFDIDG-----IGQTQ--------VNPRVDMTFARG 228 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH--HCCT-TSCEEEEE-SSCCSCCSS-----SEEEE--------CBGGGTBCHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh--cCCC-CCEEEEec-ccchhccCC-----cceEE--------EccccCcCHHHH
Confidence 4678999999999999999999775 2222 23 33333 111100000 00000 000001122455
Q ss_pred HHHHHhCCCcEEEecCCCCHHH
Q 015891 141 LQQQLIGKRYLIVLDDFEDMEV 162 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~~~~~ 162 (398)
++..++..+.++++.++.+...
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et 250 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLET 250 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHH
T ss_pred HHHHhccCCCeEEEcCcCCHHH
Confidence 7777888899999999988643
No 368
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.55 E-value=0.021 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+++|.||.|+|||||+..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468899999999999999999887
No 369
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.51 E-value=0.022 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-+.|.|.|++|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999886
No 370
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.48 E-value=0.02 Score=52.93 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|+|+.|+|||||++.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 371
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.46 E-value=0.018 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-.+++|+|++|+|||||++.+.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999887
No 372
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.46 E-value=0.025 Score=48.49 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=31.2
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.|+|-|.-|+||||.++.+.+. ....-..+.+.. ..........+..++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~tr-eP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKR-EPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEE-SSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEE-CCCCCcHHHHHHHHhh
Confidence 4788899999999999999876 333322333333 3333444455555554
No 373
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.44 E-value=0.025 Score=45.86 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..|+++|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999876
No 374
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.34 E-value=0.034 Score=45.76 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||++.+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3457899999999999999999765
No 375
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.30 E-value=0.03 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||++.+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3556899999999999999999875
No 376
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.26 E-value=0.11 Score=54.74 Aligned_cols=86 Identities=19% Similarity=0.253 Sum_probs=58.5
Q ss_pred HHHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCCc--EEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCC
Q 015891 114 RILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKRY--LIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRN 184 (398)
Q Consensus 114 ~il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~~--LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~ 184 (398)
..+..+++... .......+++++++..|++.|..++. ++|||++. |....+.+...+. ...|.+||++||+
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44556777542 23344589999999999999988655 99999999 3322222222222 2458899999999
Q ss_pred hHHHHHhcCCCceEEcCC
Q 015891 185 EKLTTEMVGEENLHQLQP 202 (398)
Q Consensus 185 ~~v~~~~~~~~~~~~l~~ 202 (398)
.+++.. .++++.+.|
T Consensus 526 ~~~~~~---aD~ii~lgp 540 (916)
T 3pih_A 526 EEVIRN---ADHIIDIGP 540 (916)
T ss_dssp HHHHHT---CSEEEEEES
T ss_pred HHHHHh---CCEEEEEcC
Confidence 988754 466777733
No 377
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.25 E-value=0.059 Score=50.93 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=35.4
Q ss_pred CCcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..++|....+.++...+.. -......|.|+|.+|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~--~a~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPK--IAKSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHH--HHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhh--hhccchhheEEeCCCchHHHHHHHHHHh
Confidence 4688888887777776654 1223345789999999999999999765
No 378
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.25 E-value=0.029 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...++.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 4578999999999999999999876
No 379
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.20 E-value=0.015 Score=49.81 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||++.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999998765
No 380
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.19 E-value=0.025 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+++|+|++|+|||||++.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999964
No 381
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.16 E-value=0.036 Score=45.83 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+...|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999875
No 382
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.14 E-value=0.025 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999765
No 383
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.14 E-value=0.034 Score=54.86 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=33.0
Q ss_pred CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..+.|.+..+.+.+.... ......+|.+.|++|+||||+++.+...
T Consensus 373 ~~f~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHH
Confidence 344555556666665422 2234578999999999999999999887
No 384
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.13 E-value=0.025 Score=54.55 Aligned_cols=98 Identities=13% Similarity=0.197 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcCCCCCcc-cc-ceEEEEecCCc-ccHHHHHHHHHHHcCCCCCCC--CCcCCCchHH
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQ-FV-PRIWVCTMSGQ-KTAESIVKRILKRLGVDDGTT--NSFEGQGLAF 136 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~-F~-~~~~v~~v~~~-~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~ 136 (398)
+-..++|+|.+|+|||+|+.++.+....... =+ .++++. +.+. ....+++.++...=.++.... ...+.....+
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 3445789999999999999999887322111 11 345555 5544 344555555444211110000 0001122222
Q ss_pred H-----HHHHHHHHh---CCCcEEEecCCCCH
Q 015891 137 L-----DYVLQQQLI---GKRYLIVLDDFEDM 160 (398)
Q Consensus 137 ~-----~~~l~~~l~---~k~~LlVLDdv~~~ 160 (398)
. ...++++++ ++..|+++||+...
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 2 234566665 46899999999843
No 385
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.10 E-value=0.033 Score=46.22 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|.+|+|||||++.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 386
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.09 E-value=0.042 Score=45.35 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...--|+|+|.+|+|||||+..+.+.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999765
No 387
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.08 E-value=0.035 Score=46.75 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999876
No 388
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.08 E-value=0.022 Score=54.81 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++|+|++|+|||||++.++..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3334999999999999999999764
No 389
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.05 E-value=0.037 Score=49.24 Aligned_cols=26 Identities=35% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++.+.|.+|+||||++..++..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35688999999999999999999754
No 390
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.04 E-value=0.023 Score=52.26 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=19.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.|+|+|++|+|||||++.++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34699999999999999998753
No 391
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.99 E-value=0.35 Score=46.56 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.....++..|.|.+|+||||+++..++
T Consensus 157 ~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 157 HVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345788999999999999999998875
No 392
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.98 E-value=0.035 Score=45.45 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-.|+|+|.+|+|||||++.+...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567899999999999999999865
No 393
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.94 E-value=0.07 Score=46.27 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999776
No 394
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.93 E-value=0.043 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.+++|+|++|+|||||++.+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 358999999999999999999875
No 395
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.87 E-value=0.032 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+++|+|++|+|||||++.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999876
No 396
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.86 E-value=0.038 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....+|+|+|.+|+|||||.+.+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999763
No 397
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.86 E-value=0.036 Score=50.82 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 50 LQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 50 l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+...|.........++|+|+|.||+||||+|..++..
T Consensus 28 l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 28 VQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp ------------CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccccccCCceEEEEECCCCccHHHHHHHHHHH
Confidence 4444433223346788999999999999999988654
No 398
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.85 E-value=0.046 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-|+++|.+|+|||||++.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999865
No 399
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.82 E-value=0.079 Score=51.75 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=52.4
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchH
Q 015891 61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLA 135 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~ 135 (398)
.+-..++|+|.+|+|||+|| ..+.+. .. -+. ++++. +.+.. ....+.+.+...=.++.... ...+.....
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~-IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~ 247 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQ--KG--QGVYCIYVA-IGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASL 247 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTT--TT--TTEEEEEEE-ESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHH
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHh--hc--CCcEEEEEE-cCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHH
Confidence 44567899999999999995 577776 22 232 35555 66554 34455555554211111000 000111222
Q ss_pred HH-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891 136 FL-----DYVLQQQLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 136 ~~-----~~~l~~~l~--~k~~LlVLDdv~~~ 160 (398)
+. ...++++++ ++..||++||+...
T Consensus 248 r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 248 QYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 22 224455554 47899999999843
No 400
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.78 E-value=0.033 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999765
No 401
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.78 E-value=0.057 Score=50.45 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....+++|+|.+|+|||||+..+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999653
No 402
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.038 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|++|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999999876
No 403
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.76 E-value=0.042 Score=46.09 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4557899999999999999999876
No 404
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.76 E-value=0.033 Score=46.74 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.-.|+++|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999999865
No 405
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.76 E-value=0.035 Score=45.25 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
--|+|+|.+|+|||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999865
No 406
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.75 E-value=0.034 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
--|+++|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 407
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.75 E-value=0.04 Score=46.07 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||++.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999775
No 408
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.75 E-value=0.11 Score=52.54 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+.+.|.|++|+||||++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999887754
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.74 E-value=0.03 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-|+|+|.+|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5889999999999999999754
No 410
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.73 E-value=0.038 Score=50.68 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+...|+|+|.+|+|||||++.+...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34678999999999999999999865
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.72 E-value=0.05 Score=44.93 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|..|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45667999999999999999999876
No 412
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.71 E-value=0.044 Score=45.31 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34667899999999999999999765
No 413
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.037 Score=48.80 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|.|+.|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999876
No 414
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.65 E-value=0.1 Score=50.98 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCccc-HHHHHHHHHHHcCCC-------CCCCCCcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQKT-AESIVKRILKRLGVD-------DGTTNSFE 130 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~~-~~~~~~~il~~l~~~-------~~~~~~~~ 130 (398)
.+-..++|+|.+|+|||+|| ..+.+.. . -+. ++++. +.+... ...+.+.+...=.++ ....+...
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~-iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~ 235 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVA-IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATL 235 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEE-ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGG
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEE-cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHH
Confidence 34566889999999999995 5777762 2 232 35555 665543 344444443321111 11111111
Q ss_pred CCchHHHHHHHHHHHh--CCCcEEEecCCCCH
Q 015891 131 GQGLAFLDYVLQQQLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 131 ~~~~~~~~~~l~~~l~--~k~~LlVLDdv~~~ 160 (398)
-.........++++++ ++..||++||+...
T Consensus 236 r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 236 QYLAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp TTHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1111222334455553 57899999999854
No 415
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.63 E-value=0.053 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
--|+|+|.+|+|||||++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 416
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.61 E-value=0.054 Score=44.25 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
--|+|+|.+|+|||||+..+...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999754
No 417
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.61 E-value=0.032 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-..-..++|+|++|+|||||++.+.+.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999999886
No 418
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.61 E-value=0.089 Score=47.26 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+++|.+|+|||||...+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999876
No 419
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.59 E-value=0.042 Score=44.84 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999876
No 420
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.57 E-value=0.091 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|..|+|||||+..+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999876
No 421
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.56 E-value=0.039 Score=46.13 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|+|.+|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999876
No 422
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.54 E-value=0.051 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||++.+...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45678999999999999999999876
No 423
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.54 E-value=0.15 Score=53.94 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHcCCCC--CCCCCcCCCchHHHHHHHHHHHhCC--CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChH
Q 015891 116 LKRLGVDD--GTTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEK 186 (398)
Q Consensus 116 l~~l~~~~--~~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~ 186 (398)
+..+|+.. .......+++++.++..|++.|... +.++|||++. +....+.|...+. ...|..|||++|+.+
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 584 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED 584 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH
Confidence 56667753 2333445899999999999999887 5899999999 4444444433332 245889999999998
Q ss_pred HHHHhcCCCceEEcCC
Q 015891 187 LTTEMVGEENLHQLQP 202 (398)
Q Consensus 187 v~~~~~~~~~~~~l~~ 202 (398)
+... +++++.|.|
T Consensus 585 ~i~~---ADrIi~Lgp 597 (993)
T 2ygr_A 585 TIEH---ADWIVDIGP 597 (993)
T ss_dssp HHHT---CSEEEEECS
T ss_pred HHHh---CCEEEEecC
Confidence 7653 477788854
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.52 E-value=0.049 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.--|+|+|.+|+|||||+..+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999865
No 425
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.51 E-value=0.045 Score=45.12 Aligned_cols=25 Identities=28% Similarity=0.483 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999999765
No 426
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.48 E-value=0.048 Score=45.55 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...--|+|+|.+|+|||||++.+.+.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 427
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.48 E-value=0.3 Score=46.12 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 49 HLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 49 ~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
++.+.|.. -.+-..++|+|.+|+|||+|+..+.+.
T Consensus 164 raID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 164 RLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHH
Confidence 34555543 345567899999999999999988875
No 428
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.48 E-value=0.046 Score=45.16 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+...-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 45667899999999999999999765
No 429
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.45 E-value=0.04 Score=46.30 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||+..+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999888765
No 430
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.45 E-value=0.045 Score=46.79 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 43 FANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 43 R~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+....+.+..+.. ....-.|+|+|.+|+|||||+..+.+.
T Consensus 14 ~~~~~~~m~~~~~----~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYF----QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhh----cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3344444444432 234567899999999999999999865
No 431
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.44 E-value=0.053 Score=44.67 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+....|+|+|.+|+|||||++.+...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34667999999999999999999866
No 432
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.44 E-value=0.14 Score=54.03 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCC--CcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGK--RYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
.+..+|+... ......+++++.++..|+..|... +.++|||++. +....+.|...+. ...|.+||+++|+.
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 3667787642 333445899999999999999887 4899999999 3322222222221 24588999999999
Q ss_pred HHHHHhcCCCceEEcC
Q 015891 186 KLTTEMVGEENLHQLQ 201 (398)
Q Consensus 186 ~v~~~~~~~~~~~~l~ 201 (398)
++... +++++.|.
T Consensus 567 ~~i~~---ADrIi~Lg 579 (972)
T 2r6f_A 567 DTMLA---ADYLIDIG 579 (972)
T ss_dssp HHHHS---CSEEEEEC
T ss_pred HHHHh---CCEEEEeC
Confidence 87653 46666664
No 433
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.44 E-value=0.048 Score=45.97 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 60 DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 60 ~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
......|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 346778999999999999999999776
No 434
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.43 E-value=0.042 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.--|+|+|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 435
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.42 E-value=0.32 Score=42.66 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=26.9
Q ss_pred cchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 42 GFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 42 GR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-|+...+.+..++.. .-+.|+|+.|.|||.+|..+...
T Consensus 94 l~~~Q~~ai~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 94 LRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp CCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhC-------CCEEEEeCCCCCHHHHHHHHHHH
Confidence 355555556555532 12788999999999999988765
No 436
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.42 E-value=0.043 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+...|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999764
No 437
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.41 E-value=0.063 Score=44.61 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=22.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-.|+|+|.+|+|||||+..+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999865
No 438
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.41 E-value=0.055 Score=44.26 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999765
No 439
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.40 E-value=0.057 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+...-|+|+|.+|+|||||+..+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999865
No 440
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.38 E-value=0.044 Score=47.42 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=52.1
Q ss_pred CeeEEEEEcCCCChHHH-HHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHH
Q 015891 62 QFRAIGVVGVAGVGKTT-LCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYV 140 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 140 (398)
.-.+..|+|+-|+|||| |.+.+.+- ........++-. ..+.......+.+.+|...+.... .....
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~--~~~g~kvli~kp----~~D~R~~~~~I~Sr~G~~~~a~~v---~~~~d---- 93 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRG--IYAKQKVVVFKP----AIDDRYHKEKVVSHNGNAIEAINI---SKASE---- 93 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE----C-----------CBTTBCCEEEEE---SSGGG----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH--HHcCCceEEEEe----ccCCcchhhhHHHhcCCceeeEEe---CCHHH----
Confidence 45788999999999999 55555432 112233333322 111112223455666655432211 11111
Q ss_pred HHHHHhCCCcEEEecCCC--CHHHHHHHHhHcCCCCCCEEEEEe
Q 015891 141 LQQQLIGKRYLIVLDDFE--DMEVCKHLSKVLPRGYGERLIITS 182 (398)
Q Consensus 141 l~~~l~~k~~LlVLDdv~--~~~~~~~l~~~l~~~~gs~IIiTT 182 (398)
+...+..+...|++|++. +.++.+.+.... ..|-.||+.-
T Consensus 94 i~~~i~~~~dvV~IDEaQFf~~~~v~~l~~la--~~gi~Vi~~G 135 (219)
T 3e2i_A 94 IMTHDLTNVDVIGIDEVQFFDDEIVSIVEKLS--ADGHRVIVAG 135 (219)
T ss_dssp GGGSCCTTCSEEEECCGGGSCTHHHHHHHHHH--HTTCEEEEEE
T ss_pred HHHHHhcCCCEEEEechhcCCHHHHHHHHHHH--HCCCEEEEee
Confidence 112234567899999998 545555555443 2466777654
No 441
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.38 E-value=0.053 Score=49.91 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 59 TDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 59 ~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.......|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999999999999999999875
No 442
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.34 E-value=0.2 Score=52.46 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHcCCCCC--CCCCcCCCchHHHHHHHHHHHhCCC--cEEEecCCCC---HHHHHHHHhHcC--CCCCCEEEEEeCCh
Q 015891 115 ILKRLGVDDG--TTNSFEGQGLAFLDYVLQQQLIGKR--YLIVLDDFED---MEVCKHLSKVLP--RGYGERLIITSRNE 185 (398)
Q Consensus 115 il~~l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~k~--~LlVLDdv~~---~~~~~~l~~~l~--~~~gs~IIiTTR~~ 185 (398)
.+..+|+... ......+++++.++..|++.|..++ .++|||++.. ....+.|...+. ...|..||+++|+.
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4667787642 3334458999999999999999887 5999999983 222222222221 23588999999999
Q ss_pred HHHHHhcCCCceEEcC
Q 015891 186 KLTTEMVGEENLHQLQ 201 (398)
Q Consensus 186 ~v~~~~~~~~~~~~l~ 201 (398)
++... .++++.+.
T Consensus 442 ~~l~~---aD~ii~lg 454 (842)
T 2vf7_A 442 DVIRR---ADWLVDVG 454 (842)
T ss_dssp HHHTT---CSEEEEEC
T ss_pred HHHHh---CCEEEEeC
Confidence 87653 45666664
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.34 E-value=0.053 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHc
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..+.+|+|++|+||||+..+++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46889999999999999998853
No 444
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.32 E-value=0.041 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|.+|+|||||++.+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 445
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.053 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999999865
No 446
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.25 E-value=0.045 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-|+|+|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 447
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.24 E-value=0.1 Score=50.49 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=34.2
Q ss_pred ccchhhHHHHHHHHhccC-C------CCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 41 HGFANEELHLQKLLSNRG-T------DDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 41 vGR~~~~~~l~~~L~~~~-~------~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|.++.++.|.+.+.... . ......++|+|.+|+|||||++.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 466777777777765321 1 224568999999999999999999876
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.23 E-value=0.054 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-..|.|.|++|+||||||..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999999875
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.20 E-value=0.19 Score=47.38 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred CCCchHHHHHHHHHHHh------CCCcEEEecCCC---CHHHHHHHHhHcC--CCCCCEEEEEeCChHHHHHhcCCCceE
Q 015891 130 EGQGLAFLDYVLQQQLI------GKRYLIVLDDFE---DMEVCKHLSKVLP--RGYGERLIITSRNEKLTTEMVGEENLH 198 (398)
Q Consensus 130 ~~~~~~~~~~~l~~~l~------~k~~LlVLDdv~---~~~~~~~l~~~l~--~~~gs~IIiTTR~~~v~~~~~~~~~~~ 198 (398)
..+++++++..+.+.+. .++-+++||++. |....+.+...+. ...|..||++||+..+... .++++
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~---~d~~~ 355 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEA---FDRKL 355 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTT---CSCEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh---CCEEE
Confidence 47899999999888887 789999999999 4444444443332 2358899999999987443 24455
Q ss_pred Ec
Q 015891 199 QL 200 (398)
Q Consensus 199 ~l 200 (398)
.+
T Consensus 356 ~l 357 (365)
T 3qf7_A 356 RI 357 (365)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 450
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.027 Score=56.88 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=33.2
Q ss_pred CCcccchhhHHHHHHHHhccCCCC---------CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 38 ANVHGFANEELHLQKLLSNRGTDD---------QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 38 ~~~vGR~~~~~~l~~~L~~~~~~~---------~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.++|.+...+.+...|.. ... ...-+.|+|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 5688988766666444432 110 0115899999999999999999876
No 451
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.18 E-value=0.056 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|.+|+|||||++.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 452
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.17 E-value=0.053 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIF 84 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~ 84 (398)
.+.+|+|++|+|||||..+++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999875
No 453
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.17 E-value=0.051 Score=52.42 Aligned_cols=97 Identities=10% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCCCCC--------cccc-ceEEEEecCCcc-cHHHHHHHHHHHcC-CCCCC--CC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKPDVK--------TQFV-PRIWVCTMSGQK-TAESIVKRILKRLG-VDDGT--TN 127 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~~v~~v~~~~-~~~~~~~~il~~l~-~~~~~--~~ 127 (398)
.+-..++|.|.+|+|||+|+.++++..... ++=+ .++++. +.+.. ....++.++... + ++... ..
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~-iGeR~~Ev~e~~~~l~~~-g~~~rtvvv~~ 222 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA-MGITQRELSYFIQEFERT-GALSRSVLFLN 222 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE-EEECHHHHHHHHHHHHHT-SGGGGEEEEEE
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE-ecCchHHHHHHHHHhhhc-ccccceEEEEE
Confidence 344567899999999999999998873321 1111 344555 55443 344555554432 1 11000 00
Q ss_pred CcCCCchHHH-----HHHHHHHHh---CCCcEEEecCCCC
Q 015891 128 SFEGQGLAFL-----DYVLQQQLI---GKRYLIVLDDFED 159 (398)
Q Consensus 128 ~~~~~~~~~~-----~~~l~~~l~---~k~~LlVLDdv~~ 159 (398)
..+.....+. ...++++++ ++..|+++||+..
T Consensus 223 t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 223 KADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp ETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0011222222 234566665 4688999999984
No 454
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.17 E-value=0.04 Score=52.98 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHcC
Q 015891 65 AIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 65 ~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.|+|+|++|+|||||++.++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3699999999999999999875
No 455
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.17 E-value=0.16 Score=49.48 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=53.2
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccc-eEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchH
Q 015891 61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVP-RIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLA 135 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~ 135 (398)
.+-..++|+|.+|+|||+|| ..+.+. .. -+. ++++. +.+.. ....+.+.+...=.++.... ...+.....
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~-iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 234 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQ--KG--QDVICIYVA-IGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPL 234 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGG--GS--CSEEEEEEE-ESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHH
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHh--hc--CCcEEEEEE-CCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHH
Confidence 45567899999999999995 577776 22 232 35555 66554 34455555554322221100 001112222
Q ss_pred HH-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891 136 FL-----DYVLQQQLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 136 ~~-----~~~l~~~l~--~k~~LlVLDdv~~~ 160 (398)
+. ...+.++++ ++..||++||+...
T Consensus 235 r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 235 LYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 22 124455554 47899999998843
No 456
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.14 E-value=0.054 Score=50.96 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHc
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.+++|+|++|+|||||..+++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4899999999999999999974
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.14 E-value=0.051 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4567899999999999999999854
No 458
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.13 E-value=0.046 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.|+|+|..|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999754
No 459
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.12 E-value=0.025 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
-.+++|+|++|+|||||++.+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 358999999999999999999765
No 460
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.11 E-value=0.051 Score=46.14 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHc
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
.....|+|+|.+|+|||||++.+..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3466899999999999999999853
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.09 E-value=0.047 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....++|.|++|+||||+|+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999775
No 462
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.08 E-value=0.067 Score=44.95 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+..--|+|+|.+|+|||||+..+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 463
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.07 E-value=0.064 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34677999999999999999999775
No 464
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.05 E-value=0.061 Score=44.50 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4457899999999999999999765
No 465
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.04 E-value=0.065 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||++.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3567899999999999999999865
No 466
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.03 E-value=0.052 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|+|.|+.|+|||||+..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 57899999999999999999875
No 467
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.03 E-value=0.072 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999765
No 468
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.02 E-value=0.065 Score=44.99 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...--|+|+|.+|+|||||+..+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 34567899999999999999999765
No 469
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.00 E-value=0.073 Score=44.78 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..-.|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999999876
No 470
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.00 E-value=0.052 Score=44.96 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999865
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.99 E-value=0.043 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHcC
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999775
No 472
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.99 E-value=0.039 Score=45.66 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+++|.+|+|||||+..+.+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999999875
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.98 E-value=0.058 Score=45.78 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999876
No 474
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.97 E-value=0.069 Score=44.43 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+..--|+|+|.+|+|||||++.+.+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999765
No 475
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.96 E-value=0.066 Score=45.47 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=22.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34667999999999999999999765
No 476
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.96 E-value=0.062 Score=44.73 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.--|+|+|.+|+|||||+..+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999865
No 477
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.95 E-value=0.1 Score=45.51 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|.|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999876
No 478
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.95 E-value=0.053 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.163 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999877665
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.95 E-value=0.037 Score=49.59 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|.|+.|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998876
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.94 E-value=0.091 Score=47.39 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999875
No 481
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.94 E-value=0.046 Score=54.09 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=51.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHHHcCCCCCCCCCcCCCchHHHHHHHHH
Q 015891 64 RAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILKRLGVDDGTTNSFEGQGLAFLDYVLQQ 143 (398)
Q Consensus 64 ~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~l~~ 143 (398)
..++|+|++|+|||||++.+..- +. .-...+.+.+.. ...... -.++.... .... ..........++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~--i~-~~~giitied~~-E~~~~~-----~~~v~~~~--r~~~-~~~~~~~~~~l~~ 328 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF--IP-PDAKVVSIEDTR-EIKLYH-----ENWIAEVT--RTGM-GEGEIDMYDLLRA 328 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG--SC-TTCCEEEEESSC-CCCCCC-----SSEEEEEC--BCCS-SSCCBCHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--CC-CCCCEEEEcCcc-cccCCC-----CCeEEEEe--eccc-ccCCcCHHHHHHH
Confidence 45899999999999999999876 32 223344444111 110000 00000000 0000 0111123445677
Q ss_pred HHhCCCcEEEecCCCCHHHHHHHHhH
Q 015891 144 QLIGKRYLIVLDDFEDMEVCKHLSKV 169 (398)
Q Consensus 144 ~l~~k~~LlVLDdv~~~~~~~~l~~~ 169 (398)
.++..+-.++++++...+....+...
T Consensus 329 ~LR~~PD~iivgEir~~E~~~~l~a~ 354 (511)
T 2oap_1 329 ALRQRPDYIIVGEVRGREAQTLFQAM 354 (511)
T ss_dssp TGGGCCSEEEESCCCSTHHHHHHHHH
T ss_pred hhccCCCeEEeCCcCHHHHHHHHHhh
Confidence 78888999999999987766555543
No 482
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.91 E-value=0.12 Score=50.06 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcCCCCCccccceEEEEecCCcccHHHHHHHHHH
Q 015891 45 NEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHKPDVKTQFVPRIWVCTMSGQKTAESIVKRILK 117 (398)
Q Consensus 45 ~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~~v~~v~~~~~~~~~~~~il~ 117 (398)
.-+..|..++. +-..-..+.|.|.+|+||||||.+++.+ ....=..++|++ .. .+..++...++.
T Consensus 182 TG~~~LD~~lg---Gl~~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fS-lE--ms~~ql~~R~~~ 246 (444)
T 3bgw_A 182 SGFTELDRMTY---GYKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS-LE--MGKKENIKRLIV 246 (444)
T ss_dssp CSCHHHHHHHS---SBCSSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEEC-SS--SCTTHHHHHHHH
T ss_pred CCcHHHHhhcC---CCCCCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEE-CC--CCHHHHHHHHHH
Confidence 33444555552 3345678999999999999999999776 222212355655 33 344445555444
No 483
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.054 Score=45.77 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999999865
No 484
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.87 E-value=0.074 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.--|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999765
No 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.84 E-value=0.058 Score=46.24 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
....|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999876
No 486
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.84 E-value=0.054 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...--|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999866
No 487
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.82 E-value=0.071 Score=44.46 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcCC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHKP 87 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~~ 87 (398)
.....|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 356779999999999999999998763
No 488
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.82 E-value=0.31 Score=47.53 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCeeEEEEEcCCCChHHHHH-HHHHcCCCCCccccceEEEEecCCcc-cHHHHHHHHHHHcCCCCCCC--CCcCCCchHH
Q 015891 61 DQFRAIGVVGVAGVGKTTLC-QRIFHKPDVKTQFVPRIWVCTMSGQK-TAESIVKRILKRLGVDDGTT--NSFEGQGLAF 136 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~~v~~v~~~~-~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~ 136 (398)
.+-..++|.|..|+|||+|+ ..+.+. +..-..++++. +.+.. ....++..+...=.++.... ...+.....+
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~-IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r 235 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVA-IGQKASTISNVVRKLEEHGALANTIVVVATASESAALQ 235 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEE-ESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHH
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEE-ecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHH
Confidence 44567889999999999996 567765 22212245666 77654 34555565544322221100 0011122222
Q ss_pred H-----HHHHHHHHh--CCCcEEEecCCCCH
Q 015891 137 L-----DYVLQQQLI--GKRYLIVLDDFEDM 160 (398)
Q Consensus 137 ~-----~~~l~~~l~--~k~~LlVLDdv~~~ 160 (398)
. ...+.++++ ++..||++||+...
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 236 YLAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 1 123444553 57899999999843
No 489
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.81 E-value=0.047 Score=45.38 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998754
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.78 E-value=0.1 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHcC
Q 015891 63 FRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 63 ~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 491
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.78 E-value=0.062 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...+|.++|++|+||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 492
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.77 E-value=0.079 Score=44.47 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+...-|+|+|..|+|||||+..+.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567999999999999999999875
No 493
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.082 Score=43.63 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999999765
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.087 Score=44.04 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 61 DQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 61 ~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
.....|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999865
No 495
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.72 E-value=0.056 Score=46.32 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||++.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999876
No 496
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.72 E-value=0.06 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3556899999999999999999865
No 497
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.71 E-value=0.062 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHc
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFH 85 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~ 85 (398)
..--|+|+|.+|+|||||+..+..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999974
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.70 E-value=0.09 Score=52.44 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=31.4
Q ss_pred CcccchhhHHHHHHHHhccCCCCCeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 39 NVHGFANEELHLQKLLSNRGTDDQFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 39 ~~vGR~~~~~~l~~~L~~~~~~~~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
+.+-|.+..+.+.+.... ......+|.+.|++|+||||+|+.+...
T Consensus 350 ~~~~r~eV~~~lr~~~~~--~~~~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 350 EWFTRPEVAEILAETYVP--KHKQGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp TTTSCHHHHHHHHHHSCC--GGGCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHhhcc--ccccceEEEccCCCCCCHHHHHHHHHHH
Confidence 334455555555555421 2234578999999999999999999775
No 499
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.68 E-value=0.082 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
...-|+|+|.+|+|||||+..+...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999765
No 500
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.67 E-value=0.065 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=20.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHcC
Q 015891 62 QFRAIGVVGVAGVGKTTLCQRIFHK 86 (398)
Q Consensus 62 ~~~~v~I~G~~GiGKTtLa~~v~~~ 86 (398)
..--|+|+|.+|+|||||+..+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999865
Done!