Query 015892
Match_columns 398
No_of_seqs 394 out of 2401
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 01:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 8.3E-41 1.8E-45 321.3 29.7 287 2-290 66-356 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 1.3E-40 2.8E-45 293.9 24.3 253 36-290 39-298 (300)
3 CHL00175 minD septum-site dete 100.0 4.5E-35 9.7E-40 274.4 22.6 239 37-286 8-255 (281)
4 TIGR01969 minD_arch cell divis 100.0 6.7E-35 1.5E-39 268.9 21.7 228 45-287 1-234 (251)
5 PRK13232 nifH nitrogenase redu 100.0 9.1E-35 2E-39 271.1 21.9 233 44-286 1-247 (273)
6 PRK13235 nifH nitrogenase redu 100.0 3.3E-34 7.1E-39 267.5 22.1 233 44-286 1-249 (274)
7 PRK13233 nifH nitrogenase redu 100.0 1.8E-34 3.9E-39 269.5 20.2 229 43-286 1-250 (275)
8 TIGR03371 cellulose_yhjQ cellu 100.0 2.9E-34 6.2E-39 263.9 17.9 235 44-287 1-245 (246)
9 COG2894 MinD Septum formation 100.0 2.7E-34 5.9E-39 245.1 13.2 232 43-286 1-248 (272)
10 CHL00072 chlL photochlorophyll 100.0 6.8E-33 1.5E-37 259.1 23.6 224 47-286 3-246 (290)
11 PRK13236 nitrogenase reductase 100.0 2.9E-33 6.3E-38 263.0 20.9 235 43-287 5-254 (296)
12 cd02040 NifH NifH gene encodes 100.0 3.3E-33 7.1E-38 260.5 20.5 235 44-289 1-251 (270)
13 PRK13234 nifH nitrogenase redu 100.0 2.2E-33 4.7E-38 263.7 19.0 233 43-287 3-252 (295)
14 PRK13185 chlL protochlorophyll 100.0 6.9E-33 1.5E-37 258.2 21.2 229 43-288 1-250 (270)
15 PRK13230 nitrogenase reductase 100.0 5.6E-33 1.2E-37 259.8 20.2 234 44-288 1-250 (279)
16 PRK10818 cell division inhibit 100.0 5.7E-33 1.2E-37 258.8 20.1 231 43-285 1-248 (270)
17 TIGR01968 minD_bact septum sit 100.0 8.6E-33 1.9E-37 256.3 20.0 229 44-285 1-238 (261)
18 PRK13869 plasmid-partitioning 100.0 2.7E-33 5.9E-38 273.0 17.3 236 42-287 119-398 (405)
19 PRK10037 cell division protein 100.0 7.4E-33 1.6E-37 254.8 17.6 229 44-292 1-244 (250)
20 COG0455 flhG Antiactivator of 100.0 2E-32 4.3E-37 249.7 19.8 233 43-288 1-243 (262)
21 TIGR01287 nifH nitrogenase iro 100.0 2.2E-32 4.8E-37 255.4 20.3 233 45-288 1-249 (275)
22 PRK13231 nitrogenase reductase 100.0 1.9E-32 4.1E-37 254.3 18.9 234 43-287 1-242 (264)
23 TIGR01281 DPOR_bchL light-inde 100.0 2.2E-32 4.9E-37 254.5 19.3 227 45-288 1-248 (268)
24 COG1192 Soj ATPases involved i 100.0 1.2E-32 2.6E-37 255.1 15.6 237 43-290 1-257 (259)
25 cd02032 Bchl_like This family 100.0 1.3E-31 2.8E-36 249.2 20.6 225 45-286 1-246 (267)
26 PRK13705 plasmid-partitioning 100.0 1.3E-31 2.8E-36 259.6 17.3 240 40-288 102-381 (388)
27 PF06564 YhjQ: YhjQ protein; 100.0 2.4E-31 5.2E-36 237.8 16.9 229 44-289 1-241 (243)
28 PHA02518 ParA-like protein; Pr 100.0 2.5E-31 5.4E-36 238.7 17.0 204 45-288 1-210 (211)
29 PHA02519 plasmid partition pro 100.0 4.5E-31 9.8E-36 255.2 19.4 237 42-287 104-380 (387)
30 TIGR03453 partition_RepA plasm 100.0 3E-31 6.6E-36 258.7 18.1 234 42-285 102-372 (387)
31 TIGR03815 CpaE_hom_Actino heli 100.0 6.5E-30 1.4E-34 243.9 19.3 220 40-281 89-320 (322)
32 cd02037 MRP-like MRP (Multiple 100.0 2.4E-29 5.2E-34 217.8 19.1 167 46-251 1-169 (169)
33 cd02117 NifH_like This family 100.0 6.5E-29 1.4E-33 223.0 19.1 194 45-250 1-212 (212)
34 cd02036 MinD Bacterial cell di 100.0 5.1E-29 1.1E-33 217.7 17.3 179 46-276 1-179 (179)
35 PF06155 DUF971: Protein of un 100.0 3E-29 6.5E-34 192.1 7.6 88 296-384 1-89 (89)
36 TIGR02016 BchX chlorophyllide 100.0 2E-27 4.3E-32 222.8 20.0 230 45-289 1-254 (296)
37 COG0489 Mrp ATPases involved i 100.0 5.4E-27 1.2E-31 215.9 19.9 205 41-255 54-263 (265)
38 COG1149 MinD superfamily P-loo 99.9 2.8E-26 6.1E-31 203.4 20.2 218 44-284 1-281 (284)
39 cd02033 BchX Chlorophyllide re 99.9 1.1E-25 2.3E-30 211.9 23.8 225 42-287 29-276 (329)
40 PRK13849 putative crown gall t 99.9 1.8E-26 3.9E-31 208.5 15.7 190 44-268 1-197 (231)
41 COG3640 CooC CO dehydrogenase 99.9 9.1E-25 2E-29 189.7 19.2 219 46-285 2-252 (255)
42 TIGR01007 eps_fam capsular exo 99.9 4.4E-25 9.6E-30 197.0 15.8 170 44-219 17-194 (204)
43 cd03110 Fer4_NifH_child This p 99.9 4.7E-25 1E-29 192.8 15.5 178 46-248 1-179 (179)
44 TIGR03018 pepcterm_TyrKin exop 99.9 4.3E-25 9.4E-30 197.3 15.3 166 40-213 31-207 (207)
45 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 5.4E-25 1.2E-29 194.9 8.0 190 47-255 1-195 (195)
46 TIGR03029 EpsG chain length de 99.9 9.3E-24 2E-28 197.1 15.8 167 41-214 100-274 (274)
47 COG1348 NifH Nitrogenase subun 99.9 1.8E-22 3.9E-27 174.3 17.5 233 44-287 1-250 (278)
48 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 3.6E-22 7.9E-27 178.1 17.5 228 45-287 1-249 (273)
49 COG4963 CpaE Flp pilus assembl 99.9 2.7E-22 5.9E-27 187.0 17.3 233 39-287 99-345 (366)
50 cd03111 CpaE_like This protein 99.9 5.1E-22 1.1E-26 157.8 13.1 102 46-214 1-106 (106)
51 TIGR01005 eps_transp_fam exopo 99.9 8.7E-22 1.9E-26 208.2 14.0 172 42-219 544-722 (754)
52 cd02038 FleN-like FleN is a me 99.9 2.1E-21 4.5E-26 162.3 13.1 109 46-218 1-110 (139)
53 PF07015 VirC1: VirC1 protein; 99.8 2.7E-20 5.8E-25 164.1 16.0 184 44-262 1-191 (231)
54 PRK09841 cryptic autophosphory 99.8 2.7E-20 5.9E-25 195.0 16.1 169 42-216 529-704 (726)
55 PRK11519 tyrosine kinase; Prov 99.8 2.5E-20 5.4E-25 195.0 15.4 169 42-216 524-699 (719)
56 cd02042 ParA ParA and ParB of 99.8 4.3E-20 9.3E-25 146.5 12.7 99 46-213 1-104 (104)
57 cd00550 ArsA_ATPase Oxyanion-t 99.8 6.8E-21 1.5E-25 175.2 8.5 203 47-250 2-239 (254)
58 PF09140 MipZ: ATPase MipZ; I 99.8 5.8E-21 1.3E-25 168.7 5.5 210 45-269 1-234 (261)
59 COG3536 Uncharacterized protei 99.8 7.1E-20 1.5E-24 137.5 7.9 93 293-388 3-96 (120)
60 TIGR02409 carnitine_bodg gamma 99.8 3.4E-20 7.4E-25 179.6 7.0 80 307-387 2-82 (366)
61 cd02035 ArsA ArsA ATPase funct 99.8 6E-20 1.3E-24 165.2 7.3 166 47-218 1-183 (217)
62 PF13614 AAA_31: AAA domain; P 99.8 7.5E-19 1.6E-23 150.1 6.9 141 45-191 1-156 (157)
63 PF02374 ArsA_ATPase: Anion-tr 99.7 1.8E-17 3.8E-22 155.9 11.1 197 44-249 1-285 (305)
64 TIGR02410 carnitine_TMLD trime 99.7 2.3E-18 5E-23 166.2 4.8 68 319-387 1-71 (362)
65 KOG3888 Gamma-butyrobetaine,2- 99.7 1.4E-17 3E-22 151.8 3.8 85 302-387 23-108 (407)
66 COG0003 ArsA Predicted ATPase 99.6 2.5E-15 5.3E-20 140.9 12.5 192 44-249 2-284 (322)
67 KOG3889 Predicted gamma-butyro 99.6 2.1E-16 4.6E-21 138.9 4.4 70 317-387 17-86 (371)
68 cd03114 ArgK-like The function 99.5 1.6E-13 3.6E-18 115.5 14.1 123 47-190 2-127 (148)
69 TIGR00064 ftsY signal recognit 99.5 1.1E-12 2.5E-17 121.4 15.6 168 42-245 70-249 (272)
70 KOG2825 Putative arsenite-tran 99.5 1.7E-13 3.6E-18 120.2 8.7 183 37-219 11-267 (323)
71 cd02034 CooC The accessory pro 99.5 2.8E-13 6.2E-18 108.9 8.9 109 50-182 4-115 (116)
72 PRK13886 conjugal transfer pro 99.4 1.5E-12 3.3E-17 116.9 13.8 48 43-90 1-48 (241)
73 cd01983 Fer4_NifH The Fer4_Nif 99.4 2.8E-12 6.1E-17 99.6 11.4 92 47-213 2-99 (99)
74 PRK10867 signal recognition pa 99.4 1.3E-11 2.9E-16 120.6 15.3 168 43-246 99-273 (433)
75 cd03115 SRP The signal recogni 99.3 4E-11 8.7E-16 104.0 15.6 162 49-245 4-171 (173)
76 PRK00090 bioD dithiobiotin syn 99.3 1.2E-11 2.5E-16 111.9 11.6 190 47-249 2-201 (222)
77 PF10609 ParA: ParA/MinD ATPas 99.3 1.1E-11 2.3E-16 91.1 7.9 68 153-220 2-69 (81)
78 PRK10416 signal recognition pa 99.3 1.6E-10 3.6E-15 109.2 17.0 168 43-246 113-292 (318)
79 TIGR00347 bioD dethiobiotin sy 99.3 5.2E-11 1.1E-15 102.6 12.3 154 49-213 2-166 (166)
80 TIGR00959 ffh signal recogniti 99.3 1E-10 2.3E-15 114.3 15.3 167 45-246 99-272 (428)
81 TIGR01425 SRP54_euk signal rec 99.3 1.7E-10 3.7E-15 112.2 16.0 167 43-245 99-271 (429)
82 PRK13768 GTPase; Provisional 99.2 2.7E-11 5.8E-16 111.4 9.6 45 43-88 1-45 (253)
83 PRK00771 signal recognition pa 99.2 2E-10 4.3E-15 112.7 14.3 167 42-246 93-265 (437)
84 PRK14493 putative bifunctional 99.2 2E-10 4.3E-15 106.2 13.4 201 44-286 1-206 (274)
85 PRK11889 flhF flagellar biosyn 99.2 5.5E-10 1.2E-14 106.4 15.1 163 43-246 240-410 (436)
86 PRK01077 cobyrinic acid a,c-di 99.1 1.9E-09 4.2E-14 107.3 16.6 203 43-286 2-216 (451)
87 cd03109 DTBS Dethiobiotin synt 99.1 3.3E-09 7.2E-14 87.8 14.9 126 48-248 3-134 (134)
88 PRK12726 flagellar biosynthesi 99.1 2.3E-09 5.1E-14 101.8 14.9 163 43-245 205-374 (407)
89 TIGR00345 arsA arsenite-activa 99.1 8.1E-10 1.7E-14 103.4 10.5 74 177-250 190-267 (284)
90 PRK12724 flagellar biosynthesi 99.0 4.9E-09 1.1E-13 101.2 14.0 159 44-245 223-391 (432)
91 TIGR00750 lao LAO/AO transport 99.0 9.8E-09 2.1E-13 96.9 15.5 153 42-218 32-185 (300)
92 PRK12374 putative dithiobiotin 99.0 1.1E-08 2.4E-13 92.9 15.3 194 43-252 1-205 (231)
93 PRK12727 flagellar biosynthesi 99.0 7.4E-09 1.6E-13 102.4 14.5 159 43-245 349-516 (559)
94 PRK05703 flhF flagellar biosyn 99.0 4.5E-09 9.7E-14 103.4 12.6 160 44-245 221-389 (424)
95 COG0541 Ffh Signal recognition 98.9 1.3E-08 2.9E-13 97.1 13.7 166 44-245 100-271 (451)
96 PRK14974 cell division protein 98.9 2.2E-08 4.8E-13 95.1 14.9 167 43-245 139-311 (336)
97 COG0132 BioD Dethiobiotin synt 98.9 4.7E-08 1E-12 86.9 14.8 201 43-253 1-207 (223)
98 PRK05632 phosphate acetyltrans 98.9 3.5E-08 7.6E-13 103.2 14.6 172 43-254 1-200 (684)
99 PF00448 SRP54: SRP54-type pro 98.8 6.6E-08 1.4E-12 85.3 13.3 165 44-244 1-171 (196)
100 PRK12723 flagellar biosynthesi 98.8 6.1E-08 1.3E-12 93.8 13.8 161 43-245 173-344 (388)
101 PF13500 AAA_26: AAA domain; P 98.8 4.1E-08 8.9E-13 87.1 11.0 188 45-254 1-196 (199)
102 TIGR00313 cobQ cobyric acid sy 98.8 1E-07 2.2E-12 95.4 14.8 195 47-251 1-225 (475)
103 PRK00784 cobyric acid synthase 98.8 1.2E-07 2.5E-12 95.6 15.2 195 43-252 1-229 (488)
104 PRK09435 membrane ATPase/prote 98.8 2.3E-07 5.1E-12 87.9 15.2 151 42-218 54-207 (332)
105 PRK13505 formate--tetrahydrofo 98.7 3.8E-07 8.2E-12 90.1 16.0 91 187-284 355-457 (557)
106 TIGR00379 cobB cobyrinic acid 98.6 8.6E-07 1.9E-11 88.3 15.2 198 47-285 2-212 (449)
107 PRK14723 flhF flagellar biosyn 98.6 3.4E-07 7.3E-12 94.9 12.1 162 44-245 185-355 (767)
108 TIGR03499 FlhF flagellar biosy 98.6 8.6E-08 1.9E-12 89.6 6.7 43 43-86 193-237 (282)
109 PRK06731 flhF flagellar biosyn 98.6 1.3E-06 2.9E-11 80.5 14.4 163 43-246 74-244 (270)
110 PRK14722 flhF flagellar biosyn 98.5 1.5E-06 3.3E-11 83.5 13.7 163 43-245 136-313 (374)
111 COG1703 ArgK Putative periplas 98.4 8.4E-06 1.8E-10 74.6 15.2 151 41-216 48-200 (323)
112 COG0552 FtsY Signal recognitio 98.4 6.5E-07 1.4E-11 83.1 6.9 169 42-246 137-317 (340)
113 PRK06995 flhF flagellar biosyn 98.4 3.3E-06 7E-11 83.8 12.3 159 44-245 256-423 (484)
114 COG1797 CobB Cobyrinic acid a, 98.4 6.5E-06 1.4E-10 79.0 13.0 170 46-254 2-183 (451)
115 PF03308 ArgK: ArgK protein; 98.3 5.3E-06 1.1E-10 74.8 9.2 127 43-188 28-155 (266)
116 PRK06278 cobyrinic acid a,c-di 98.1 0.00011 2.3E-09 73.3 16.4 169 40-248 234-418 (476)
117 KOG0780 Signal recognition par 98.1 3.1E-05 6.6E-10 73.0 10.3 153 42-222 99-257 (483)
118 COG1419 FlhF Flagellar GTP-bin 98.0 0.00012 2.6E-09 70.3 13.0 142 44-219 203-352 (407)
119 KOG0781 Signal recognition par 97.9 6E-05 1.3E-09 72.8 9.9 160 37-216 371-541 (587)
120 PRK13896 cobyrinic acid a,c-di 97.9 0.00022 4.7E-09 70.3 14.2 169 44-253 1-178 (433)
121 cd04170 EF-G_bact Elongation f 97.9 9.3E-05 2E-09 68.8 10.6 96 149-251 61-157 (268)
122 COG1763 MobB Molybdopterin-gua 97.9 0.00019 4.1E-09 60.8 11.3 42 43-85 1-42 (161)
123 COG1341 Predicted GTPase or GT 97.8 0.00015 3.3E-09 69.3 10.7 44 43-87 72-115 (398)
124 PRK14494 putative molybdopteri 97.8 8E-05 1.7E-09 67.0 7.9 39 44-83 1-39 (229)
125 TIGR00176 mobB molybdopterin-g 97.7 0.00026 5.6E-09 60.0 10.0 38 46-84 1-38 (155)
126 cd04168 TetM_like Tet(M)-like 97.7 0.00065 1.4E-08 61.9 12.3 93 149-248 61-154 (237)
127 cd01886 EF-G Elongation factor 97.6 0.0039 8.4E-08 58.0 17.0 96 149-251 61-157 (270)
128 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00069 1.5E-08 62.9 11.8 94 149-249 68-162 (267)
129 PRK14495 putative molybdopteri 97.5 0.00079 1.7E-08 65.6 11.1 39 44-83 1-39 (452)
130 PRK14721 flhF flagellar biosyn 97.5 0.0023 5E-08 62.8 13.8 160 43-245 190-358 (420)
131 COG1492 CobQ Cobyric acid synt 97.5 0.00043 9.3E-09 67.9 8.2 197 46-251 3-228 (486)
132 PF03205 MobB: Molybdopterin g 97.5 0.00031 6.8E-09 58.4 6.4 40 45-85 1-41 (140)
133 cd04167 Snu114p Snu114p subfam 97.4 0.0012 2.5E-08 59.2 10.1 67 150-217 69-135 (213)
134 PRK10751 molybdopterin-guanine 97.3 0.0012 2.5E-08 56.8 7.7 42 43-85 5-46 (173)
135 cd01884 EF_Tu EF-Tu subfamily. 97.2 0.0029 6.4E-08 55.8 10.3 68 150-217 63-130 (195)
136 KOG1532 GTPase XAB1, interacts 97.2 0.0044 9.6E-08 56.2 11.0 50 40-90 15-64 (366)
137 PF06155 DUF971: Protein of un 97.2 0.00025 5.5E-09 54.0 2.3 31 358-388 3-34 (89)
138 PF03029 ATP_bind_1: Conserved 97.1 7.5E-05 1.6E-09 68.0 -0.8 36 53-88 4-39 (238)
139 TIGR02237 recomb_radB DNA repa 97.1 0.0012 2.7E-08 58.7 7.0 39 44-83 12-50 (209)
140 cd03116 MobB Molybdenum is an 97.1 0.0011 2.3E-08 56.4 6.2 41 44-85 1-41 (159)
141 PLN02974 adenosylmethionine-8- 97.1 0.04 8.7E-07 58.9 18.5 64 150-214 183-252 (817)
142 PRK12740 elongation factor G; 97.1 0.0039 8.5E-08 65.7 10.8 94 149-249 57-151 (668)
143 cd00477 FTHFS Formyltetrahydro 97.0 0.0013 2.7E-08 64.9 6.4 48 43-93 37-87 (524)
144 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.0029 6.4E-08 53.5 7.4 34 47-81 5-38 (159)
145 COG0857 Pta BioD-like N-termin 96.9 0.0051 1.1E-07 58.9 9.5 37 43-79 1-37 (354)
146 PRK00889 adenylylsulfate kinas 96.9 0.0017 3.7E-08 56.1 5.8 41 43-84 3-43 (175)
147 cd04166 CysN_ATPS CysN_ATPS su 96.9 0.0085 1.8E-07 53.4 10.3 69 150-218 75-143 (208)
148 PRK00652 lpxK tetraacyldisacch 96.8 0.0049 1.1E-07 58.6 8.5 41 44-84 49-90 (325)
149 PRK00741 prfC peptide chain re 96.8 0.018 3.9E-07 58.7 13.1 94 149-249 76-170 (526)
150 PRK13506 formate--tetrahydrofo 96.8 0.0023 5E-08 63.7 6.4 49 43-94 53-104 (578)
151 cd01394 radB RadB. The archaea 96.8 0.002 4.4E-08 57.8 5.5 41 44-85 19-59 (218)
152 cd00881 GTP_translation_factor 96.8 0.0078 1.7E-07 52.1 9.0 67 150-217 60-126 (189)
153 cd01891 TypA_BipA TypA (tyrosi 96.8 0.047 1E-06 47.9 14.1 68 150-218 63-130 (194)
154 cd01125 repA Hexameric Replica 96.8 0.0032 6.9E-08 57.4 6.4 39 46-84 2-52 (239)
155 PF01583 APS_kinase: Adenylyls 96.8 0.0027 5.9E-08 53.5 5.4 42 44-86 2-43 (156)
156 PRK07667 uridine kinase; Provi 96.8 0.003 6.5E-08 55.6 6.0 39 45-84 18-56 (193)
157 PRK05973 replicative DNA helic 96.8 0.0021 4.5E-08 58.2 5.0 76 5-84 27-103 (237)
158 KOG1533 Predicted GTPase [Gene 96.7 0.0014 3.1E-08 58.0 3.6 38 52-89 9-46 (290)
159 TIGR00490 aEF-2 translation el 96.7 0.0079 1.7E-07 63.8 9.8 68 149-217 83-150 (720)
160 PRK07952 DNA replication prote 96.7 0.0021 4.6E-08 58.6 4.8 35 47-81 101-135 (244)
161 PRK03846 adenylylsulfate kinas 96.7 0.0032 7E-08 55.6 5.7 46 39-85 19-64 (198)
162 PRK04296 thymidine kinase; Pro 96.7 0.013 2.8E-07 51.4 9.5 36 43-79 1-36 (190)
163 TIGR00503 prfC peptide chain r 96.7 0.018 3.8E-07 58.7 11.6 87 149-242 77-163 (527)
164 PRK10218 GTP-binding protein; 96.6 0.042 9E-07 56.9 13.9 84 149-239 65-148 (607)
165 cd04163 Era Era subfamily. Er 96.6 0.021 4.6E-07 47.8 10.1 67 150-217 49-123 (168)
166 TIGR00708 cobA cob(I)alamin ad 96.6 0.014 3E-07 50.1 8.6 38 44-83 6-43 (173)
167 PRK00007 elongation factor G; 96.6 0.029 6.2E-07 59.4 12.9 94 149-249 72-166 (693)
168 cd04165 GTPBP1_like GTPBP1-lik 96.6 0.033 7.2E-07 50.2 11.4 67 150-217 82-150 (224)
169 PF07755 DUF1611: Protein of u 96.5 0.021 4.5E-07 53.4 10.2 163 43-245 111-291 (301)
170 PRK00093 GTP-binding protein D 96.5 0.021 4.5E-07 57.0 11.0 66 150-216 47-120 (435)
171 PRK06696 uridine kinase; Valid 96.5 0.0043 9.3E-08 56.0 5.5 43 42-85 20-62 (223)
172 TIGR01618 phage_P_loop phage n 96.5 0.0087 1.9E-07 53.6 7.3 36 41-84 9-44 (220)
173 PRK09361 radB DNA repair and r 96.5 0.0042 9.1E-08 56.0 5.4 38 44-82 23-60 (225)
174 TIGR01394 TypA_BipA GTP-bindin 96.5 0.019 4.2E-07 59.3 10.7 68 149-217 61-128 (594)
175 COG0529 CysC Adenylylsulfate k 96.5 0.005 1.1E-07 52.3 5.2 43 42-85 21-63 (197)
176 PRK00049 elongation factor Tu; 96.4 0.029 6.4E-07 55.2 10.8 68 150-217 73-140 (396)
177 PRK08233 hypothetical protein; 96.4 0.0036 7.7E-08 54.2 3.9 38 44-84 3-40 (182)
178 PRK14491 putative bifunctional 96.3 0.013 2.8E-07 60.6 8.3 42 43-85 9-50 (597)
179 smart00382 AAA ATPases associa 96.3 0.0096 2.1E-07 48.3 6.1 40 45-85 3-42 (148)
180 PRK00089 era GTPase Era; Revie 96.3 0.058 1.3E-06 50.7 12.1 68 150-218 51-126 (292)
181 cd01894 EngA1 EngA1 subfamily. 96.3 0.029 6.3E-07 46.8 9.2 67 150-217 43-117 (157)
182 cd01887 IF2_eIF5B IF2/eIF5B (i 96.3 0.044 9.6E-07 46.4 10.2 67 150-217 48-114 (168)
183 cd01124 KaiC KaiC is a circadi 96.3 0.006 1.3E-07 53.1 4.8 37 48-84 2-38 (187)
184 TIGR02012 tigrfam_recA protein 96.3 0.0066 1.4E-07 57.5 5.3 39 44-83 55-93 (321)
185 cd01120 RecA-like_NTPases RecA 96.3 0.0062 1.3E-07 51.3 4.7 38 49-86 3-40 (165)
186 PF13481 AAA_25: AAA domain; P 96.2 0.0061 1.3E-07 53.4 4.5 39 47-85 34-82 (193)
187 PRK12739 elongation factor G; 96.2 0.05 1.1E-06 57.6 12.0 94 149-249 70-164 (691)
188 TIGR00682 lpxK tetraacyldisacc 96.2 0.0084 1.8E-07 56.7 5.6 41 43-83 27-68 (311)
189 PRK14489 putative bifunctional 96.2 0.058 1.3E-06 52.5 11.6 42 43-85 204-245 (366)
190 PRK13351 elongation factor G; 96.2 0.059 1.3E-06 57.1 12.5 89 149-244 70-158 (687)
191 cd04125 RabA_like RabA-like su 96.2 0.37 8E-06 41.8 15.7 68 150-217 47-117 (188)
192 COG0050 TufB GTPases - transla 96.2 0.019 4.1E-07 52.7 7.4 91 150-242 73-164 (394)
193 cd03113 CTGs CTP synthetase (C 96.2 0.054 1.2E-06 48.7 10.2 174 53-249 10-237 (255)
194 cd02028 UMPK_like Uridine mono 96.2 0.0078 1.7E-07 52.3 4.9 38 47-85 2-39 (179)
195 cd01393 recA_like RecA is a b 96.2 0.015 3.1E-07 52.4 6.9 39 44-83 19-63 (226)
196 PF13479 AAA_24: AAA domain 96.1 0.022 4.7E-07 51.0 7.7 31 45-84 4-34 (213)
197 cd04127 Rab27A Rab27a subfamil 96.1 0.28 6E-06 42.1 14.4 88 150-241 61-152 (180)
198 cd04171 SelB SelB subfamily. 96.1 0.032 6.9E-07 46.9 8.3 67 151-217 50-116 (164)
199 TIGR00484 EF-G translation elo 96.0 0.22 4.8E-06 52.8 15.6 95 149-250 72-167 (689)
200 PTZ00141 elongation factor 1- 96.0 0.013 2.8E-07 58.5 6.0 68 149-216 82-156 (446)
201 PRK15453 phosphoribulokinase; 96.0 0.015 3.2E-07 53.8 5.8 44 42-86 3-46 (290)
202 PRK05480 uridine/cytidine kina 96.0 0.016 3.4E-07 51.7 5.9 39 43-84 5-43 (209)
203 PHA02542 41 41 helicase; Provi 95.9 0.01 2.3E-07 59.4 5.2 41 45-85 190-230 (473)
204 PRK06762 hypothetical protein; 95.9 0.011 2.5E-07 50.4 4.8 37 43-83 1-37 (166)
205 cd01885 EF2 EF2 (for archaea a 95.9 0.082 1.8E-06 47.6 10.5 66 150-216 71-136 (222)
206 cd01122 GP4d_helicase GP4d_hel 95.9 0.012 2.6E-07 54.7 5.0 37 47-83 32-69 (271)
207 COG1066 Sms Predicted ATP-depe 95.9 0.022 4.9E-07 54.8 6.8 39 44-83 92-130 (456)
208 PRK05986 cob(I)alamin adenolsy 95.9 0.041 8.9E-07 48.0 7.8 37 46-83 24-60 (191)
209 cd02027 APSK Adenosine 5'-phos 95.9 0.011 2.5E-07 49.6 4.3 37 49-85 3-39 (149)
210 KOG1534 Putative transcription 95.9 0.0094 2E-07 52.0 3.8 44 43-86 1-44 (273)
211 PLN03127 Elongation factor Tu; 95.8 0.098 2.1E-06 52.2 11.5 68 150-217 122-189 (447)
212 cd02029 PRK_like Phosphoribulo 95.8 0.015 3.2E-07 53.3 5.2 40 46-86 1-40 (277)
213 cd04110 Rab35 Rab35 subfamily. 95.8 0.26 5.5E-06 43.4 13.0 67 151-217 54-122 (199)
214 PHA00729 NTP-binding motif con 95.7 0.015 3.3E-07 52.1 4.8 24 46-70 19-42 (226)
215 PLN03126 Elongation factor Tu; 95.7 0.064 1.4E-06 54.0 9.7 68 150-217 142-209 (478)
216 cd01890 LepA LepA subfamily. 95.7 0.1 2.2E-06 44.7 9.9 66 150-217 65-131 (179)
217 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.018 4E-07 53.1 5.4 38 46-83 37-74 (259)
218 PRK05439 pantothenate kinase; 95.7 0.024 5.2E-07 53.5 6.1 46 39-85 81-128 (311)
219 TIGR03574 selen_PSTK L-seryl-t 95.7 0.013 2.9E-07 53.7 4.4 35 49-83 3-37 (249)
220 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.018 3.8E-07 52.2 5.1 40 44-84 19-64 (235)
221 cd04139 RalA_RalB RalA/RalB su 95.6 0.25 5.3E-06 41.4 11.9 67 150-217 46-117 (164)
222 TIGR00455 apsK adenylylsulfate 95.6 0.024 5.2E-07 49.4 5.6 44 40-84 14-57 (184)
223 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.6 0.5 1.1E-05 40.5 13.8 67 150-217 48-119 (172)
224 cd01889 SelB_euk SelB subfamil 95.6 0.057 1.2E-06 47.2 8.0 66 150-217 66-132 (192)
225 cd01883 EF1_alpha Eukaryotic e 95.6 0.034 7.5E-07 49.9 6.6 69 150-218 75-150 (219)
226 PF13245 AAA_19: Part of AAA d 95.5 0.027 5.9E-07 41.4 4.8 34 47-80 12-49 (76)
227 TIGR03575 selen_PSTK_euk L-ser 95.5 0.016 3.5E-07 55.3 4.3 39 48-86 2-41 (340)
228 PRK07414 cob(I)yrinic acid a,c 95.5 0.11 2.4E-06 44.7 8.9 45 36-82 14-58 (178)
229 cd04161 Arl2l1_Arl13_like Arl2 95.5 0.42 9.1E-06 40.6 12.7 68 150-217 41-112 (167)
230 PF01695 IstB_IS21: IstB-like 95.4 0.024 5.1E-07 49.2 4.9 39 43-82 46-84 (178)
231 cd00984 DnaB_C DnaB helicase C 95.4 0.023 4.9E-07 51.8 5.0 38 47-84 15-53 (242)
232 COG1484 DnaC DNA replication p 95.4 0.022 4.7E-07 52.4 4.8 38 43-81 104-141 (254)
233 PF13173 AAA_14: AAA domain 95.4 0.021 4.6E-07 46.5 4.3 38 45-84 3-40 (128)
234 cd01864 Rab19 Rab19 subfamily. 95.4 0.21 4.6E-06 42.1 10.7 66 151-217 51-120 (165)
235 PF13207 AAA_17: AAA domain; P 95.4 0.019 4.1E-07 46.0 3.8 31 47-83 2-32 (121)
236 PF00485 PRK: Phosphoribulokin 95.4 0.023 4.9E-07 50.0 4.5 37 46-83 1-41 (194)
237 COG1618 Predicted nucleotide k 95.4 0.036 7.7E-07 46.6 5.3 37 42-79 3-39 (179)
238 PRK12736 elongation factor Tu; 95.3 0.1 2.2E-06 51.3 9.6 68 150-217 73-140 (394)
239 TIGR00436 era GTP-binding prot 95.3 0.28 6.2E-06 45.5 12.1 66 150-217 46-119 (270)
240 cd00154 Rab Rab family. Rab G 95.3 0.4 8.7E-06 39.5 12.0 68 150-217 47-117 (159)
241 PRK01906 tetraacyldisaccharide 95.3 0.025 5.3E-07 54.1 4.9 41 44-84 56-97 (338)
242 TIGR00485 EF-Tu translation el 95.3 0.17 3.7E-06 49.7 11.0 68 150-217 73-140 (394)
243 PRK06526 transposase; Provisio 95.3 0.011 2.5E-07 54.3 2.5 36 45-81 99-134 (254)
244 cd00880 Era_like Era (E. coli 95.3 0.11 2.3E-06 42.9 8.4 66 151-217 44-116 (163)
245 cd04101 RabL4 RabL4 (Rab-like4 95.3 0.39 8.4E-06 40.4 11.9 68 150-217 50-119 (164)
246 COG1663 LpxK Tetraacyldisaccha 95.2 0.069 1.5E-06 50.4 7.5 42 44-85 47-89 (336)
247 cd01888 eIF2_gamma eIF2-gamma 95.2 0.13 2.9E-06 45.4 9.2 66 152-217 83-149 (203)
248 COG3367 Uncharacterized conser 95.2 0.4 8.6E-06 44.9 12.0 165 44-249 148-326 (339)
249 PF01926 MMR_HSR1: 50S ribosom 95.2 0.19 4.2E-06 39.8 9.1 63 150-214 45-116 (116)
250 cd04160 Arfrp1 Arfrp1 subfamil 95.1 0.39 8.5E-06 40.5 11.6 67 150-217 48-119 (167)
251 cd04122 Rab14 Rab14 subfamily. 95.1 0.52 1.1E-05 39.8 12.3 68 150-217 49-119 (166)
252 COG4108 PrfC Peptide chain rel 95.1 0.11 2.4E-06 50.4 8.6 85 150-243 79-165 (528)
253 PRK05306 infB translation init 95.1 0.3 6.4E-06 52.1 12.7 67 150-217 335-401 (787)
254 PRK08533 flagellar accessory p 95.1 0.06 1.3E-06 48.7 6.7 39 44-83 24-62 (230)
255 cd01882 BMS1 Bms1. Bms1 is an 95.1 0.28 6E-06 44.3 11.0 64 151-217 82-145 (225)
256 PF02606 LpxK: Tetraacyldisacc 95.0 0.035 7.6E-07 52.9 5.1 41 43-83 34-75 (326)
257 COG2403 Predicted GTPase [Gene 95.0 0.034 7.4E-07 52.6 4.7 38 44-81 126-163 (449)
258 COG3598 RepA RecA-family ATPas 95.0 0.029 6.2E-07 52.3 4.1 41 46-86 90-140 (402)
259 PRK05433 GTP-binding protein L 95.0 0.16 3.4E-06 52.8 10.0 67 150-217 72-138 (600)
260 cd01860 Rab5_related Rab5-rela 95.0 0.69 1.5E-05 38.7 12.6 68 150-217 48-118 (163)
261 PF03796 DnaB_C: DnaB-like hel 95.0 0.037 8.1E-07 51.0 4.9 39 46-84 20-59 (259)
262 cd01867 Rab8_Rab10_Rab13_like 95.0 0.53 1.2E-05 39.8 11.9 67 151-217 51-120 (167)
263 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 94.9 0.68 1.5E-05 39.0 12.5 67 151-217 50-119 (166)
264 PRK15494 era GTPase Era; Provi 94.9 0.34 7.3E-06 46.6 11.6 66 150-217 98-172 (339)
265 PRK05541 adenylylsulfate kinas 94.9 0.054 1.2E-06 46.7 5.6 40 43-83 6-45 (176)
266 cd04124 RabL2 RabL2 subfamily. 94.9 0.47 1E-05 40.0 11.3 67 150-217 47-116 (161)
267 smart00175 RAB Rab subfamily o 94.9 0.45 9.7E-06 39.8 11.2 67 151-217 48-117 (164)
268 cd04112 Rab26 Rab26 subfamily. 94.9 0.55 1.2E-05 40.9 12.0 67 151-217 49-118 (191)
269 cd04109 Rab28 Rab28 subfamily. 94.9 0.49 1.1E-05 42.2 11.9 67 151-217 49-121 (215)
270 cd04113 Rab4 Rab4 subfamily. 94.8 0.48 1E-05 39.7 11.2 67 150-217 47-117 (161)
271 cd01868 Rab11_like Rab11-like. 94.8 0.41 8.9E-06 40.3 10.7 67 151-217 51-120 (165)
272 CHL00071 tufA elongation facto 94.8 0.22 4.8E-06 49.3 10.2 68 150-217 73-140 (409)
273 cd00983 recA RecA is a bacter 94.8 0.049 1.1E-06 51.7 5.2 39 44-83 55-93 (325)
274 PTZ00133 ADP-ribosylation fact 94.7 2.5 5.4E-05 36.5 15.9 68 150-217 59-130 (182)
275 cd04137 RheB Rheb (Ras Homolog 94.7 0.55 1.2E-05 40.2 11.5 66 151-217 48-118 (180)
276 PF00154 RecA: recA bacterial 94.7 0.26 5.5E-06 46.8 9.8 40 44-84 53-92 (322)
277 cd02025 PanK Pantothenate kina 94.7 0.05 1.1E-06 48.9 4.9 38 46-84 1-40 (220)
278 smart00173 RAS Ras subfamily o 94.7 0.88 1.9E-05 38.1 12.5 67 151-218 47-118 (164)
279 PRK07933 thymidylate kinase; V 94.7 0.077 1.7E-06 47.5 6.0 37 46-83 2-38 (213)
280 PRK09302 circadian clock prote 94.7 0.095 2.1E-06 53.4 7.5 40 44-84 31-71 (509)
281 COG2874 FlaH Predicted ATPases 94.6 0.094 2E-06 46.2 6.2 103 44-159 28-131 (235)
282 PLN02924 thymidylate kinase 94.6 0.066 1.4E-06 48.1 5.5 44 37-81 9-52 (220)
283 TIGR03600 phage_DnaB phage rep 94.6 0.049 1.1E-06 54.1 5.1 37 47-83 196-233 (421)
284 cd01866 Rab2 Rab2 subfamily. 94.6 0.56 1.2E-05 39.8 11.1 66 152-217 53-121 (168)
285 PRK09183 transposase/IS protei 94.6 0.058 1.3E-06 49.8 5.2 37 44-81 102-138 (259)
286 cd01861 Rab6 Rab6 subfamily. 94.6 0.89 1.9E-05 37.9 12.2 66 152-217 49-117 (161)
287 PLN00043 elongation factor 1-a 94.6 0.16 3.6E-06 50.7 8.7 69 149-217 82-157 (447)
288 cd02023 UMPK Uridine monophosp 94.6 0.054 1.2E-06 47.7 4.8 37 46-85 1-37 (198)
289 TIGR03881 KaiC_arch_4 KaiC dom 94.5 0.079 1.7E-06 47.8 5.9 39 44-83 20-58 (229)
290 cd04120 Rab12 Rab12 subfamily. 94.5 1.5 3.3E-05 38.7 14.0 67 151-217 48-117 (202)
291 PRK06067 flagellar accessory p 94.5 0.065 1.4E-06 48.6 5.3 39 44-83 25-63 (234)
292 PLN03118 Rab family protein; P 94.5 0.36 7.8E-06 42.9 10.0 67 151-217 61-132 (211)
293 cd02019 NK Nucleoside/nucleoti 94.5 0.081 1.8E-06 38.0 4.7 32 47-81 2-33 (69)
294 cd01898 Obg Obg subfamily. Th 94.5 0.76 1.7E-05 38.8 11.7 66 152-217 48-126 (170)
295 KOG2749 mRNA cleavage and poly 94.5 0.081 1.8E-06 49.9 5.7 46 42-88 101-146 (415)
296 cd04152 Arl4_Arl7 Arl4/Arl7 su 94.5 2.4 5.1E-05 36.6 14.9 67 150-217 50-121 (183)
297 COG4240 Predicted kinase [Gene 94.5 0.057 1.2E-06 47.9 4.4 40 43-83 49-89 (300)
298 cd04108 Rab36_Rab34 Rab34/Rab3 94.4 0.57 1.2E-05 40.0 10.7 67 151-217 48-118 (170)
299 cd04118 Rab24 Rab24 subfamily. 94.4 0.76 1.6E-05 39.9 11.6 66 152-217 50-117 (193)
300 cd04119 RJL RJL (RabJ-Like) su 94.3 0.94 2E-05 37.9 11.8 68 150-217 47-122 (168)
301 PRK12735 elongation factor Tu; 94.3 0.33 7.2E-06 47.8 10.1 68 150-217 73-140 (396)
302 TIGR03420 DnaA_homol_Hda DnaA 94.3 0.079 1.7E-06 47.6 5.3 41 43-84 37-77 (226)
303 cd03112 CobW_like The function 94.3 0.27 5.8E-06 41.7 8.2 33 49-83 4-36 (158)
304 cd00878 Arf_Arl Arf (ADP-ribos 94.2 0.5 1.1E-05 39.4 9.9 67 151-217 42-112 (158)
305 PF00009 GTP_EFTU: Elongation 94.2 0.079 1.7E-06 46.2 5.0 69 149-218 67-135 (188)
306 cd00876 Ras Ras family. The R 94.2 0.7 1.5E-05 38.3 10.7 68 151-218 46-117 (160)
307 PTZ00416 elongation factor 2; 94.2 0.25 5.4E-06 53.4 9.6 68 150-218 90-157 (836)
308 smart00178 SAR Sar1p-like memb 94.1 2.1 4.6E-05 37.0 13.9 83 150-242 59-146 (184)
309 cd04154 Arl2 Arl2 subfamily. 94.1 1.1 2.3E-05 38.2 11.9 66 151-217 57-127 (173)
310 TIGR03594 GTPase_EngA ribosome 94.1 0.26 5.6E-06 49.0 9.1 67 150-217 45-119 (429)
311 PRK06217 hypothetical protein; 94.1 0.075 1.6E-06 46.2 4.6 33 45-83 2-34 (183)
312 PRK03003 GTP-binding protein D 94.1 0.3 6.5E-06 49.3 9.5 67 150-217 84-158 (472)
313 PRK06835 DNA replication prote 94.1 0.068 1.5E-06 51.1 4.6 40 43-83 182-221 (329)
314 PRK12377 putative replication 94.1 0.081 1.8E-06 48.4 4.9 37 45-82 102-138 (248)
315 PRK09270 nucleoside triphospha 94.0 0.1 2.3E-06 47.1 5.6 41 43-84 32-73 (229)
316 cd04121 Rab40 Rab40 subfamily. 94.0 1.3 2.9E-05 38.6 12.3 67 151-217 54-122 (189)
317 TIGR03172 probable selenium-de 94.0 0.07 1.5E-06 48.1 4.2 30 46-78 1-30 (232)
318 TIGR00487 IF-2 translation ini 94.0 0.73 1.6E-05 47.7 12.2 64 153-217 136-199 (587)
319 PRK08118 topology modulation p 93.9 0.063 1.4E-06 46.0 3.7 24 45-69 2-25 (167)
320 PRK05595 replicative DNA helic 93.9 0.082 1.8E-06 52.9 5.1 38 46-83 202-240 (444)
321 cd04148 RGK RGK subfamily. Th 93.9 1.3 2.9E-05 39.6 12.4 66 150-217 48-118 (221)
322 COG4088 Predicted nucleotide k 93.9 0.065 1.4E-06 46.9 3.6 34 50-83 6-39 (261)
323 PRK05380 pyrG CTP synthetase; 93.8 0.23 5E-06 50.0 7.9 50 43-92 1-51 (533)
324 PRK10512 selenocysteinyl-tRNA- 93.8 0.27 5.8E-06 51.2 8.7 65 153-217 52-116 (614)
325 KOG3888 Gamma-butyrobetaine,2- 93.8 0.098 2.1E-06 49.2 4.9 39 295-334 75-113 (407)
326 cd04123 Rab21 Rab21 subfamily. 93.8 1.3 2.9E-05 36.7 11.7 68 151-218 48-118 (162)
327 cd04115 Rab33B_Rab33A Rab33B/R 93.8 1 2.2E-05 38.2 11.1 67 150-217 49-121 (170)
328 PRK11823 DNA repair protein Ra 93.8 0.1 2.2E-06 52.2 5.4 38 46-83 81-118 (446)
329 cd01672 TMPK Thymidine monopho 93.8 0.11 2.5E-06 45.3 5.2 36 45-81 1-36 (200)
330 TIGR01393 lepA GTP-binding pro 93.8 0.38 8.2E-06 49.9 9.7 67 150-217 68-134 (595)
331 cd00009 AAA The AAA+ (ATPases 93.8 0.12 2.6E-06 42.0 5.1 40 44-84 19-58 (151)
332 PRK05642 DNA replication initi 93.7 0.091 2E-06 47.7 4.6 35 49-83 49-83 (234)
333 PRK08727 hypothetical protein; 93.7 0.095 2.1E-06 47.6 4.7 36 46-82 43-78 (233)
334 TIGR00554 panK_bact pantothena 93.7 0.14 3.1E-06 47.9 5.9 43 42-85 60-104 (290)
335 PRK08506 replicative DNA helic 93.7 0.099 2.1E-06 52.7 5.2 39 46-84 193-231 (472)
336 cd01121 Sms Sms (bacterial rad 93.7 0.1 2.3E-06 50.7 5.1 38 46-83 83-120 (372)
337 PF02572 CobA_CobO_BtuR: ATP:c 93.7 0.12 2.6E-06 44.3 4.9 27 55-81 13-39 (172)
338 cd04153 Arl5_Arl8 Arl5/Arl8 su 93.6 1.5 3.3E-05 37.4 11.9 68 150-217 57-128 (174)
339 PRK08760 replicative DNA helic 93.6 0.09 1.9E-06 53.0 4.7 39 46-84 230-269 (476)
340 PLN00223 ADP-ribosylation fact 93.6 4.3 9.3E-05 35.0 15.9 84 150-242 59-146 (181)
341 cd04136 Rap_like Rap-like subf 93.6 1.4 3E-05 36.8 11.5 66 151-217 48-118 (163)
342 TIGR00475 selB selenocysteine- 93.6 0.21 4.5E-06 51.7 7.4 67 151-217 49-115 (581)
343 PRK09354 recA recombinase A; P 93.6 0.12 2.5E-06 49.6 5.2 40 44-84 60-99 (349)
344 PLN00116 translation elongatio 93.6 0.33 7.3E-06 52.5 9.3 67 150-217 96-162 (843)
345 TIGR03880 KaiC_arch_3 KaiC dom 93.6 0.13 2.9E-06 46.2 5.3 39 44-83 16-54 (224)
346 PRK12317 elongation factor 1-a 93.6 0.52 1.1E-05 46.9 10.0 68 150-217 82-151 (425)
347 COG0467 RAD55 RecA-superfamily 93.5 0.16 3.4E-06 46.9 5.9 41 44-85 23-63 (260)
348 TIGR00041 DTMP_kinase thymidyl 93.5 0.15 3.2E-06 44.7 5.5 37 44-81 3-39 (195)
349 PRK00131 aroK shikimate kinase 93.5 0.092 2E-06 44.9 4.1 34 44-83 4-37 (175)
350 PF01935 DUF87: Domain of unkn 93.5 0.13 2.8E-06 46.4 5.2 40 44-84 23-63 (229)
351 TIGR00416 sms DNA repair prote 93.5 0.12 2.5E-06 51.8 5.2 38 46-83 95-132 (454)
352 COG0480 FusA Translation elong 93.5 0.44 9.5E-06 50.0 9.6 95 149-250 72-168 (697)
353 TIGR00235 udk uridine kinase. 93.4 0.11 2.4E-06 46.2 4.5 39 43-84 5-43 (207)
354 smart00177 ARF ARF-like small 93.4 3.6 7.9E-05 35.1 13.9 83 150-241 55-141 (175)
355 cd01865 Rab3 Rab3 subfamily. 93.4 1.7 3.6E-05 36.7 11.7 67 151-217 49-118 (165)
356 PRK08939 primosomal protein Dn 93.4 0.12 2.6E-06 48.9 4.9 38 44-82 156-193 (306)
357 cd04175 Rap1 Rap1 subgroup. T 93.3 1.6 3.4E-05 36.7 11.4 67 151-218 48-119 (164)
358 KOG0635 Adenosine 5'-phosphosu 93.3 0.22 4.7E-06 41.3 5.5 48 37-85 24-71 (207)
359 cd04126 Rab20 Rab20 subfamily. 93.3 5.8 0.00013 35.5 16.7 68 150-217 42-112 (220)
360 PLN02796 D-glycerate 3-kinase 93.3 0.16 3.4E-06 48.5 5.5 41 43-84 99-139 (347)
361 cd04142 RRP22 RRP22 subfamily. 93.3 1.2 2.6E-05 39.2 10.8 67 151-217 48-128 (198)
362 PRK09554 feoB ferrous iron tra 93.3 1 2.2E-05 48.2 12.1 89 150-246 48-148 (772)
363 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.16 3.5E-06 46.2 5.4 40 44-84 21-60 (237)
364 PRK00093 GTP-binding protein D 93.2 1.6 3.4E-05 43.5 12.9 67 150-217 219-296 (435)
365 PLN03108 Rab family protein; P 93.2 1.7 3.8E-05 38.5 12.0 112 152-288 55-172 (210)
366 CHL00189 infB translation init 93.2 0.37 8E-06 51.0 8.6 67 150-217 293-359 (742)
367 PRK08903 DnaA regulatory inact 93.2 0.14 3E-06 46.2 4.9 38 45-83 43-80 (227)
368 cd01863 Rab18 Rab18 subfamily. 93.2 1.9 4E-05 36.0 11.6 68 150-217 47-118 (161)
369 PLN03046 D-glycerate 3-kinase; 93.2 0.17 3.7E-06 49.4 5.7 42 43-85 211-252 (460)
370 PF13604 AAA_30: AAA domain; P 93.2 0.14 3E-06 45.2 4.7 36 44-80 18-53 (196)
371 cd01878 HflX HflX subfamily. 93.2 1.8 4E-05 37.9 12.0 67 151-217 88-165 (204)
372 PRK08181 transposase; Validate 93.2 0.1 2.2E-06 48.3 4.0 37 44-81 106-142 (269)
373 PF02421 FeoB_N: Ferrous iron 93.2 0.48 1E-05 40.0 7.7 90 150-247 45-142 (156)
374 PRK06749 replicative DNA helic 93.0 0.14 3E-06 50.9 4.9 39 46-84 187-225 (428)
375 PF05729 NACHT: NACHT domain 93.0 0.11 2.5E-06 43.7 3.8 26 48-73 3-28 (166)
376 PF12846 AAA_10: AAA-like doma 93.0 0.14 3.1E-06 47.8 4.8 33 50-82 6-38 (304)
377 PRK08116 hypothetical protein; 92.9 0.14 3.1E-06 47.5 4.6 35 47-82 117-151 (268)
378 PRK06547 hypothetical protein; 92.9 0.14 3E-06 44.1 4.1 37 42-84 13-49 (172)
379 TIGR02238 recomb_DMC1 meiotic 92.9 0.19 4.2E-06 47.7 5.4 40 44-84 96-141 (313)
380 PRK07261 topology modulation p 92.8 0.14 3.1E-06 44.0 4.2 23 46-69 2-24 (171)
381 cd01893 Miro1 Miro1 subfamily. 92.8 1.4 3.1E-05 37.1 10.4 68 150-218 45-116 (166)
382 TIGR00665 DnaB replicative DNA 92.7 0.17 3.6E-06 50.5 5.1 39 46-84 196-235 (434)
383 cd04150 Arf1_5_like Arf1-Arf5- 92.7 2.3 5.1E-05 35.6 11.5 68 150-217 42-113 (159)
384 PRK06761 hypothetical protein; 92.7 0.13 2.9E-06 47.8 3.9 40 43-83 2-42 (282)
385 PF06745 KaiC: KaiC; InterPro 92.7 0.15 3.2E-06 46.0 4.2 40 44-84 19-59 (226)
386 PF00931 NB-ARC: NB-ARC domain 92.6 0.15 3.2E-06 47.6 4.3 44 42-86 17-62 (287)
387 PRK07560 elongation factor EF- 92.6 0.52 1.1E-05 50.3 8.8 67 150-217 85-151 (731)
388 cd04117 Rab15 Rab15 subfamily. 92.6 3.5 7.5E-05 34.6 12.5 67 151-217 48-117 (161)
389 cd01895 EngA2 EngA2 subfamily. 92.6 2 4.3E-05 35.9 11.1 67 150-217 48-125 (174)
390 COG0572 Udk Uridine kinase [Nu 92.5 0.18 3.9E-06 44.8 4.5 40 44-86 8-47 (218)
391 PRK06893 DNA replication initi 92.4 0.19 4.1E-06 45.4 4.6 36 46-82 41-76 (229)
392 PRK03731 aroL shikimate kinase 92.3 0.18 3.9E-06 43.1 4.2 36 43-84 1-36 (171)
393 PRK08006 replicative DNA helic 92.3 0.2 4.4E-06 50.3 5.0 38 46-83 225-263 (471)
394 PRK04328 hypothetical protein; 92.2 0.26 5.7E-06 45.2 5.4 40 44-84 23-62 (249)
395 cd01862 Rab7 Rab7 subfamily. 92.2 2.2 4.7E-05 36.0 10.8 66 152-218 49-122 (172)
396 COG1159 Era GTPase [General fu 92.2 1.6 3.5E-05 40.5 10.3 112 45-217 7-126 (298)
397 TIGR03594 GTPase_EngA ribosome 92.2 2.6 5.7E-05 41.8 12.9 66 151-217 219-295 (429)
398 smart00174 RHO Rho (Ras homolo 92.2 1.2 2.5E-05 37.9 9.2 67 150-217 44-114 (174)
399 PTZ00035 Rad51 protein; Provis 92.2 0.37 8E-06 46.3 6.5 39 44-83 118-162 (337)
400 TIGR02655 circ_KaiC circadian 92.1 0.53 1.1E-05 47.7 7.8 39 44-83 21-60 (484)
401 cd04162 Arl9_Arfrp2_like Arl9/ 92.1 3.9 8.5E-05 34.5 12.3 67 150-217 42-111 (164)
402 PF08433 KTI12: Chromatin asso 92.0 0.21 4.6E-06 46.3 4.5 35 49-83 5-39 (270)
403 PRK04040 adenylate kinase; Pro 92.0 0.23 5E-06 43.5 4.5 27 43-70 1-27 (188)
404 cd04151 Arl1 Arl1 subfamily. 92.0 3.3 7E-05 34.5 11.5 68 150-217 41-112 (158)
405 PRK05748 replicative DNA helic 92.0 0.21 4.5E-06 50.1 4.7 39 46-84 204-243 (448)
406 COG0703 AroK Shikimate kinase 91.9 0.13 2.9E-06 43.9 2.7 34 44-83 2-35 (172)
407 PRK06921 hypothetical protein; 91.9 0.24 5.1E-06 45.9 4.6 37 44-81 117-154 (266)
408 PRK06904 replicative DNA helic 91.8 0.23 5E-06 50.0 4.8 38 46-83 222-260 (472)
409 cd04114 Rab30 Rab30 subfamily. 91.8 3.8 8.2E-05 34.4 11.8 65 152-217 56-124 (169)
410 PLN03187 meiotic recombination 91.8 0.37 8E-06 46.3 5.9 39 45-83 126-170 (344)
411 cd02024 NRK1 Nicotinamide ribo 91.8 0.17 3.7E-06 44.2 3.4 34 46-84 1-34 (187)
412 TIGR02655 circ_KaiC circadian 91.8 0.28 6.1E-06 49.6 5.4 40 45-84 263-302 (484)
413 PRK08084 DNA replication initi 91.7 0.25 5.5E-06 44.8 4.6 38 45-83 46-83 (235)
414 PRK08840 replicative DNA helic 91.7 0.26 5.7E-06 49.5 5.0 38 46-83 218-256 (464)
415 PF13401 AAA_22: AAA domain; P 91.6 0.18 3.8E-06 40.8 3.2 39 47-85 6-49 (131)
416 PF13086 AAA_11: AAA domain; P 91.6 0.19 4.1E-06 44.9 3.7 34 47-80 19-60 (236)
417 PRK05506 bifunctional sulfate 91.6 0.28 6E-06 51.4 5.3 44 41-85 457-500 (632)
418 PLN00023 GTP-binding protein; 91.6 11 0.00023 36.0 15.3 91 150-240 81-188 (334)
419 PRK00698 tmk thymidylate kinas 91.6 0.38 8.3E-06 42.3 5.5 35 44-79 3-37 (205)
420 PRK14490 putative bifunctional 91.5 0.43 9.4E-06 46.5 6.3 39 44-84 5-43 (369)
421 COG1072 CoaA Panthothenate kin 91.4 0.44 9.4E-06 43.8 5.6 43 41-84 79-123 (283)
422 COG1855 ATPase (PilT family) [ 91.3 0.25 5.4E-06 48.3 4.2 44 32-76 251-294 (604)
423 cd04155 Arl3 Arl3 subfamily. 91.3 4.9 0.00011 33.9 12.1 82 150-241 56-142 (173)
424 TIGR00337 PyrG CTP synthase. C 91.3 0.72 1.6E-05 46.5 7.6 49 45-93 2-51 (525)
425 KOG0460 Mitochondrial translat 91.3 0.49 1.1E-05 44.6 5.9 87 154-241 119-205 (449)
426 COG2895 CysN GTPases - Sulfate 91.2 0.47 1E-05 45.0 5.8 101 150-251 84-185 (431)
427 PRK06321 replicative DNA helic 91.2 0.31 6.7E-06 49.0 5.0 39 46-84 227-266 (472)
428 TIGR02034 CysN sulfate adenyly 91.2 0.24 5.1E-06 49.0 4.1 68 150-217 78-145 (406)
429 PRK13947 shikimate kinase; Pro 91.1 0.36 7.7E-06 41.2 4.7 32 46-83 3-34 (171)
430 COG0468 RecA RecA/RadA recombi 91.1 0.39 8.5E-06 44.6 5.2 39 44-83 60-98 (279)
431 PTZ00301 uridine kinase; Provi 91.1 0.45 9.7E-06 42.4 5.4 39 45-84 4-44 (210)
432 PLN03071 GTP-binding nuclear p 91.0 2 4.3E-05 38.4 9.7 68 150-217 60-129 (219)
433 PLN03186 DNA repair protein RA 91.0 0.46 1E-05 45.6 5.8 39 46-84 124-168 (342)
434 cd04116 Rab9 Rab9 subfamily. 91.0 4.3 9.3E-05 34.2 11.4 67 150-217 52-126 (170)
435 COG1160 Predicted GTPases [Gen 91.0 3.2 7E-05 40.8 11.5 112 45-217 4-124 (444)
436 cd04138 H_N_K_Ras_like H-Ras/N 91.0 6.1 0.00013 32.6 12.2 65 152-217 49-118 (162)
437 PLN02348 phosphoribulokinase 90.9 0.5 1.1E-05 45.9 5.8 43 42-85 47-104 (395)
438 PRK13946 shikimate kinase; Pro 90.8 0.32 7E-06 42.3 4.2 35 43-83 9-43 (184)
439 cd00877 Ran Ran (Ras-related n 90.8 1.8 3.9E-05 36.6 8.8 67 150-217 47-116 (166)
440 PRK09518 bifunctional cytidyla 90.7 1.5 3.4E-05 46.6 9.9 67 150-217 321-395 (712)
441 PRK05537 bifunctional sulfate 90.7 0.4 8.6E-06 49.4 5.3 40 44-84 392-432 (568)
442 PRK00081 coaE dephospho-CoA ki 90.7 0.35 7.6E-06 42.5 4.3 34 43-83 1-34 (194)
443 COG0237 CoaE Dephospho-CoA kin 90.6 0.38 8.3E-06 42.5 4.5 34 43-83 1-34 (201)
444 COG0504 PyrG CTP synthase (UTP 90.6 2.1 4.4E-05 42.5 9.7 46 45-90 2-48 (533)
445 PRK09165 replicative DNA helic 90.6 0.35 7.7E-06 49.0 4.8 39 46-84 218-271 (497)
446 COG1102 Cmk Cytidylate kinase 90.6 0.26 5.5E-06 41.6 3.1 24 46-70 2-25 (179)
447 PF13671 AAA_33: AAA domain; P 90.6 0.21 4.6E-06 41.1 2.7 31 48-83 2-32 (143)
448 PRK05636 replicative DNA helic 90.5 0.4 8.6E-06 48.7 5.1 39 46-84 266-305 (505)
449 PLN03210 Resistant to P. syrin 90.5 0.38 8.2E-06 54.1 5.4 38 42-80 205-242 (1153)
450 PF02223 Thymidylate_kin: Thym 90.5 0.34 7.3E-06 42.1 4.1 29 55-84 6-34 (186)
451 PF13191 AAA_16: AAA ATPase do 90.5 0.38 8.3E-06 41.3 4.4 40 44-84 24-63 (185)
452 PF09848 DUF2075: Uncharacteri 90.5 0.35 7.6E-06 46.8 4.5 39 45-83 1-41 (352)
453 PRK04220 2-phosphoglycerate ki 90.4 0.5 1.1E-05 44.3 5.2 36 43-83 91-126 (301)
454 COG3854 SpoIIIAA ncharacterize 90.3 0.45 9.7E-06 42.6 4.5 73 9-83 103-180 (308)
455 TIGR02729 Obg_CgtA Obg family 90.2 5.9 0.00013 37.9 12.6 66 152-217 205-285 (329)
456 cd00157 Rho Rho (Ras homology) 90.2 1 2.2E-05 38.0 6.7 68 150-217 46-116 (171)
457 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 90.2 7.8 0.00017 33.5 12.4 68 150-217 51-121 (182)
458 COG0125 Tmk Thymidylate kinase 90.2 0.67 1.5E-05 41.2 5.6 36 43-79 2-37 (208)
459 cd02021 GntK Gluconate kinase 90.0 0.3 6.5E-06 40.7 3.2 32 49-85 3-34 (150)
460 PRK06851 hypothetical protein; 90.0 1.2 2.5E-05 43.2 7.5 47 42-89 212-258 (367)
461 PRK13695 putative NTPase; Prov 90.0 0.64 1.4E-05 39.9 5.3 31 46-77 2-32 (174)
462 PRK12339 2-phosphoglycerate ki 89.8 0.35 7.6E-06 42.6 3.6 33 46-82 4-36 (197)
463 TIGR02236 recomb_radA DNA repa 89.8 0.46 1E-05 45.0 4.7 40 44-84 95-140 (310)
464 COG2074 2-phosphoglycerate kin 89.7 0.35 7.6E-06 43.7 3.4 31 40-70 83-114 (299)
465 TIGR00073 hypB hydrogenase acc 89.4 0.85 1.9E-05 40.4 5.8 40 43-84 21-60 (207)
466 PRK04301 radA DNA repair and r 89.4 0.48 1.1E-05 45.1 4.4 40 44-84 102-147 (317)
467 PLN02748 tRNA dimethylallyltra 89.3 0.62 1.3E-05 46.6 5.3 43 35-83 13-55 (468)
468 PLN02327 CTP synthase 89.3 1.2 2.6E-05 45.1 7.3 49 45-93 2-51 (557)
469 PRK05124 cysN sulfate adenylyl 89.3 0.52 1.1E-05 47.5 4.8 69 150-218 105-173 (474)
470 KOG0744 AAA+-type ATPase [Post 89.3 0.61 1.3E-05 43.8 4.7 51 43-95 176-230 (423)
471 PF05970 PIF1: PIF1-like helic 89.2 0.43 9.3E-06 46.4 4.0 33 47-79 24-56 (364)
472 PF06418 CTP_synth_N: CTP synt 89.2 1.1 2.3E-05 40.9 6.2 49 45-93 2-51 (276)
473 TIGR02239 recomb_RAD51 DNA rep 89.1 0.68 1.5E-05 44.0 5.2 40 44-84 96-141 (316)
474 PF01202 SKI: Shikimate kinase 89.1 0.27 5.8E-06 41.6 2.2 25 55-84 2-26 (158)
475 PRK07004 replicative DNA helic 89.1 0.51 1.1E-05 47.4 4.5 38 47-84 215-253 (460)
476 PRK13975 thymidylate kinase; P 89.1 0.49 1.1E-05 41.4 4.0 27 43-70 1-27 (196)
477 PF13238 AAA_18: AAA domain; P 89.0 0.36 7.8E-06 38.7 2.9 20 50-69 3-22 (129)
478 cd04177 RSR1 RSR1 subgroup. R 88.9 7.7 0.00017 32.6 11.3 66 151-217 48-118 (168)
479 PRK09302 circadian clock prote 88.9 0.68 1.5E-05 47.2 5.4 39 44-83 273-311 (509)
480 TIGR00376 DNA helicase, putati 88.8 0.6 1.3E-05 48.9 5.0 34 47-80 175-208 (637)
481 COG1100 GTPase SAR1 and relate 88.7 1.7 3.6E-05 38.6 7.2 68 151-218 53-124 (219)
482 cd01874 Cdc42 Cdc42 subfamily. 88.7 5.1 0.00011 34.2 10.1 67 150-217 47-117 (175)
483 PF00910 RNA_helicase: RNA hel 88.7 0.49 1.1E-05 37.1 3.3 22 51-72 4-25 (107)
484 cd04128 Spg1 Spg1p. Spg1p (se 88.5 6.1 0.00013 34.1 10.5 67 151-217 48-116 (182)
485 COG2109 BtuR ATP:corrinoid ade 88.3 0.97 2.1E-05 39.1 5.0 41 39-81 24-64 (198)
486 PF06414 Zeta_toxin: Zeta toxi 88.3 0.47 1E-05 41.8 3.4 40 44-85 14-53 (199)
487 PHA02530 pseT polynucleotide k 88.3 0.48 1.1E-05 44.5 3.6 36 43-83 1-36 (300)
488 COG5256 TEF1 Translation elong 88.2 0.98 2.1E-05 43.8 5.5 101 150-250 83-192 (428)
489 TIGR01313 therm_gnt_kin carboh 88.2 0.5 1.1E-05 40.0 3.3 30 50-84 3-32 (163)
490 PF01745 IPT: Isopentenyl tran 88.2 0.88 1.9E-05 40.3 4.8 34 44-81 1-34 (233)
491 PF00004 AAA: ATPase family as 88.1 0.79 1.7E-05 36.8 4.4 29 52-83 5-33 (132)
492 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 88.1 6.6 0.00014 35.3 10.7 68 150-217 47-117 (222)
493 PRK09519 recA DNA recombinatio 88.1 0.77 1.7E-05 48.7 5.2 42 44-86 60-101 (790)
494 PRK12338 hypothetical protein; 88.0 0.5 1.1E-05 44.7 3.5 24 45-69 5-28 (319)
495 PRK03003 GTP-binding protein D 88.0 3 6.5E-05 42.1 9.3 43 173-217 291-334 (472)
496 PRK13949 shikimate kinase; Pro 87.9 0.57 1.2E-05 40.2 3.5 33 45-83 2-34 (169)
497 PRK06851 hypothetical protein; 87.9 1.5 3.2E-05 42.5 6.6 48 44-91 29-76 (367)
498 PLN02165 adenylate isopentenyl 87.9 0.61 1.3E-05 44.4 3.9 38 40-83 39-76 (334)
499 PRK00091 miaA tRNA delta(2)-is 87.7 0.67 1.5E-05 43.8 4.1 35 43-83 3-37 (307)
500 PF02562 PhoH: PhoH-like prote 87.5 0.71 1.5E-05 40.9 3.9 33 47-79 21-55 (205)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=8.3e-41 Score=321.28 Aligned_cols=287 Identities=39% Similarity=0.640 Sum_probs=220.0
Q ss_pred hhhHHHHHHhcCCCccceeEEeeecCCCCcccccccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 2 FEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|.+.|.++|.+++|++.+.++++..... .....-...+.+|+++|+|.|+||||||||+|+|||.+||+.|+||++||+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 66 LKEQCSAELLRITGAKAIDWKLSHNIAT-LKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeeehhh-hccccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 5678999999999999999988875321 101011235777899999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc--CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcC
Q 015892 82 DVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 159 (398)
Q Consensus 82 D~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~ 159 (398)
|+|+++++.++|.+...... .....+.+....++...+.+. .......++++.....+.+++....|+.||||||||
T Consensus 145 D~qgps~~~~lg~~~~~~~~-~~~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~ 223 (369)
T PRK11670 145 DIYGPSIPTMLGAEDQRPTS-PDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDM 223 (369)
T ss_pred CCCCCCcchhcCCcccCCcc-cCCceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeC
Confidence 99999998888764321111 011122332223333222111 111223345555566777777543368999999999
Q ss_pred CCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCC--CceecccCCChHHHHHH
Q 015892 160 PPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQ 237 (398)
Q Consensus 160 pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~--~~~~~~~~~~~~~~~~~ 237 (398)
||++++..+...++.++|.+++|++|+..++.++.+.++.+.+.+++++|+|+||+.+.+. .+....+.++..+.+++
T Consensus 224 PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae 303 (369)
T PRK11670 224 PPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAE 303 (369)
T ss_pred CCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHH
Confidence 9999987666656778899999999999999999999999999999999999999866543 22222345567899999
Q ss_pred HhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHh
Q 015892 238 QFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 290 (398)
Q Consensus 238 ~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~~i~~~ 290 (398)
.++.++++.||.+..+.++...|+|+..+.|+++.+++|.+|++++.+++...
T Consensus 304 ~~~~~ll~~IP~~~~I~ea~~~G~Pv~~~~p~s~~a~~y~~LA~el~~~~~~~ 356 (369)
T PRK11670 304 KYHTQLLGQMPLHISLREDLDRGTPTVVSRPESEFTAIYRQLADRVAAQLYWQ 356 (369)
T ss_pred HcCCcEEEEeCCChHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999988544
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-40 Score=293.90 Aligned_cols=253 Identities=42% Similarity=0.675 Sum_probs=225.3
Q ss_pred ccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceee-eccC
Q 015892 36 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYL 114 (398)
Q Consensus 36 ~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~-~~~~ 114 (398)
.++++.+...+|+|.|+||||||||+|+|||.+||+.|++|.++|+|..+++.+.++|.+.+...... ....+ ....
T Consensus 39 ~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~--~g~~Pv~~~~ 116 (300)
T KOG3022|consen 39 KQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSD--NGWIPVVVNK 116 (300)
T ss_pred ccccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecC--CCceeeeecC
Confidence 46688889999999999999999999999999999999999999999999999999999877643332 23333 5568
Q ss_pred CeEEEecccCC---CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCC-CeEEEEeCCChhhH
Q 015892 115 GVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAF 190 (398)
Q Consensus 115 ~l~vlp~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~-d~viiv~~p~~~s~ 190 (398)
++.+++.++.. .+...|+++.....|++++....|+..||+|||||||+++.++.+.+...- +.+++|++|+..++
T Consensus 117 ~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl 196 (300)
T KOG3022|consen 117 NLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVAL 196 (300)
T ss_pred CeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhh
Confidence 99999988544 347789999999999999999999999999999999999999887664443 77999999999999
Q ss_pred HHHHHHHHHHhccCCCeeEEEEccccccC--CCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCC
Q 015892 191 IDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 268 (398)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~vV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~ 268 (398)
.++.+-++++++.+++++|+|.||..+.+ +.+....|...-.+.+++.+|+++++.||.|+.+.++.+.|.|+++..|
T Consensus 197 ~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p 276 (300)
T KOG3022|consen 197 QDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYP 276 (300)
T ss_pred HHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCC
Confidence 99999999999999999999999999987 3566667777888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 015892 269 CGEVANTFQDLGVCVVQQCAKI 290 (398)
Q Consensus 269 ~s~~~~~~~~la~~i~~~i~~~ 290 (398)
.|+++.+|.+++.+|.+.+.+.
T Consensus 277 ~s~~~~af~~i~~~i~~~~~~~ 298 (300)
T KOG3022|consen 277 DSPASEAFEDIAEKLVEQLSSK 298 (300)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999887654
No 3
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=4.5e-35 Score=274.44 Aligned_cols=239 Identities=25% Similarity=0.321 Sum_probs=186.4
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc----c---ccc-CCCCCce
Q 015892 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----L---LEM-NPEKRTI 108 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~----~---~~~-~~~~~~i 108 (398)
+.+.++|+++|+|+|+||||||||+|+|||.+|+++|+||++||+|+|++++..+++.+.. + ... ....+.+
T Consensus 8 ~~~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~ 87 (281)
T CHL00175 8 KEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQAL 87 (281)
T ss_pred hhhcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhhe
Confidence 3466778999999999999999999999999999999999999999998888888776532 1 111 1122223
Q ss_pred ee-eccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015892 109 IP-TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 109 ~~-~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
.. ..+++++++|++...... ... ...+.++++.+....||||||||||+++.....+ +.++|.+++|++|+.
T Consensus 88 ~~~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~ 160 (281)
T CHL00175 88 IRDKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEI 160 (281)
T ss_pred eecCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCCh
Confidence 32 346899999986543211 111 2235566655542289999999999998776655 567899999999999
Q ss_pred hhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 188 LAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
.++.++.++++.+.+.+....++|+|++..+.... ......+++++.++.++++.||++..+.+|...|+|+.++.
T Consensus 161 ~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~ 236 (281)
T CHL00175 161 TAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQA----NDMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNK 236 (281)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhh----hccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCC
Confidence 99999999999999888777899999975432111 01113567888899989999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 268 ~~s~~~~~~~~la~~i~~~ 286 (398)
|+++++++|++||++|.++
T Consensus 237 ~~~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 237 KLTLSGIAFENAARRLVGK 255 (281)
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999988865
No 4
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=6.7e-35 Score=268.90 Aligned_cols=228 Identities=25% Similarity=0.354 Sum_probs=177.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc---ccc---cCCCCCceeeeccCCeEE
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE---MNPEKRTIIPTEYLGVKL 118 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~---~~~---~~~~~~~i~~~~~~~l~v 118 (398)
|+|+|.|+||||||||+|+|||.+|+++|+||++||+|+|++++..+++.+.. +.+ .....+........|+++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKV 80 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEE
Confidence 58999999999999999999999999999999999999998788888776531 111 111122222334578999
Q ss_pred EecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHH
Q 015892 119 VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 198 (398)
Q Consensus 119 lp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~ 198 (398)
+|++.......... ...+.+++..+. +.||||||||||+++..+..+ +..+|.+++|++|+..++..+.++++
T Consensus 81 lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~~ 153 (251)
T TIGR01969 81 IPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTKI 153 (251)
T ss_pred EeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHHH
Confidence 99775433222111 233555555543 789999999999999887766 55789999999999999999888888
Q ss_pred HHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHHHHH
Q 015892 199 MFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQD 278 (398)
Q Consensus 199 ~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~ 278 (398)
.....+.+..++|+|++..... . ...+.+++.++.++++.||++..+.+|...|+|+.++.|+++++++|++
T Consensus 154 ~~~~~~~~~~~vv~N~~~~~~~-~-------~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 225 (251)
T TIGR01969 154 VAEKLGTAILGVVLNRVTRDKT-E-------LGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFME 225 (251)
T ss_pred HHHhcCCceEEEEEECCCchhh-h-------hHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHHH
Confidence 8877788889999999643211 1 1345677778888889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 015892 279 LGVCVVQQC 287 (398)
Q Consensus 279 la~~i~~~i 287 (398)
|+++|..+-
T Consensus 226 la~~i~~~~ 234 (251)
T TIGR01969 226 LAAELAGIE 234 (251)
T ss_pred HHHHHHhcc
Confidence 999987654
No 5
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=9.1e-35 Score=271.07 Aligned_cols=233 Identities=18% Similarity=0.167 Sum_probs=172.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc--ccccc---c----CCCCCceeeeccC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLE---M----NPEKRTIIPTEYL 114 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~--~~~~~---~----~~~~~~i~~~~~~ 114 (398)
||+|+|+ +||||||||+|+|||..||++|+||++||+|||++++..++|.. .++.+ . ....+.+.....+
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~ 79 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFG 79 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCC
Confidence 4899999 99999999999999999999999999999999999998886532 22111 1 1111223333467
Q ss_pred CeEEEecccCCCcccc-cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCChhhHHH
Q 015892 115 GVKLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
|++++|++........ .........+.+.++.+ +++||||||||++++... ......+.++|.+++|++|+..|+.+
T Consensus 80 ~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~ 158 (273)
T PRK13232 80 DIKCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYA 158 (273)
T ss_pred CeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHH
Confidence 9999997653222111 11111222355566555 478999999998776311 11111134789999999999999999
Q ss_pred HHHHHHHHhcc---CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCC
Q 015892 193 VAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 269 (398)
Q Consensus 193 ~~~~~~~l~~~---~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~ 269 (398)
+.++++.++.. +.+..|+|+|+.. .. ..++..+++++.++..+++.||.+..+.+|...|+|+..+.|+
T Consensus 159 ~~~~~k~l~~~~~~~l~~~GiV~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 230 (273)
T PRK13232 159 ANNICKGLAKFAKGGARLGGIICNSRN--VD------GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDPE 230 (273)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEeCCC--CC------ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCCC
Confidence 99888877754 5667799999742 11 1234678899999988888999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 015892 270 GEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 270 s~~~~~~~~la~~i~~~ 286 (398)
++++++|.++++++.++
T Consensus 231 s~~a~~y~~La~el~~~ 247 (273)
T PRK13232 231 SNQAKEYLTLAHNVQNN 247 (273)
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 99999999999998765
No 6
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=3.3e-34 Score=267.49 Aligned_cols=233 Identities=19% Similarity=0.169 Sum_probs=166.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc--ccc---ccc---CCCCCceeeeccCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRL---LEM---NPEKRTIIPTEYLG 115 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~--~~~---~~~---~~~~~~i~~~~~~~ 115 (398)
||+|+|+ +||||||||+|+|||++||++|+|||+||+|||++++..+++.. .++ ... ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 5899999 79999999999999999999999999999999999988775422 111 111 11222344455689
Q ss_pred eEEEecccCCCcccccCCcc-HH-HHHHHHHhhc-cCCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCChhhHH
Q 015892 116 VKLVSFGFSGQGRAIMRGPM-VS-GVINQLLTTT-EWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~-~~-~~l~~ll~~~-~~~~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
++++|++............. .. ..++.+ ... ..++||||||||++++.... ...+.+.++|.+++|++|+..|+.
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~ 158 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQL-GAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMY 158 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhh-chhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHH
Confidence 99999764332211111111 11 223322 111 02679999999976553211 111112378999999999999999
Q ss_pred HHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.++.. +++..++|+|+.... ..++..+.+.+.++..+++.||++..+.+|...|+|+.++.
T Consensus 159 g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~--------~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~ 230 (274)
T PRK13235 159 AANNICKGILKYADAGGVRLGGLICNSRKVD--------NEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYD 230 (274)
T ss_pred HHHHHHHHHHHHhhcCCCceeEEEEecCCCC--------chHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEEC
Confidence 999888776543 455678999963211 12356788888899878888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 268 ~~s~~~~~~~~la~~i~~~ 286 (398)
|+++++++|.+|++++.++
T Consensus 231 p~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 231 PTHPQADEYRALARKIDEN 249 (274)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999998755
No 7
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=269.50 Aligned_cols=229 Identities=16% Similarity=0.159 Sum_probs=171.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCcccCCcc--cccc---c----CCCCCceeeec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPEN--RLLE---M----NPEKRTIIPTE 112 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q~~~~~~~l~~~~--~~~~---~----~~~~~~i~~~~ 112 (398)
|+++|+|+ +||||||||+|+|||++||+ +|+|||+||+|||++++..++|... ++.+ . ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 68999999 89999999999999999997 6999999999999998876655432 1111 1 11123445566
Q ss_pred cCCeEEEecccCCCcccccCCccH-HHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhc------CCCeEEEEeCC
Q 015892 113 YLGVKLVSFGFSGQGRAIMRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------PLTAAVIVTTP 185 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~------a~d~viiv~~p 185 (398)
.+|++++|++.............. ...+...++.+. ++||||||||++.+ +.++ +. ++|.+++|++|
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~---~~~a--l~~~~~~~aad~viIp~~p 153 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDV---VCGG--FAMPIRDGKAQEVYIVASG 153 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCce---eecc--ccccchhccCceEEEeccc
Confidence 789999998754432111111111 112455555553 78999999995433 2222 22 68999999999
Q ss_pred ChhhHHHHHHHHHHHh----ccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCC
Q 015892 186 QKLAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 261 (398)
Q Consensus 186 ~~~s~~~~~~~~~~l~----~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~ 261 (398)
+..|+.++.++++.+. ..+++..|+|+|+.. .. .+++..+++.+.++.+++..||++..+.+|...|+
T Consensus 154 ~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~~------~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~ 225 (275)
T PRK13233 154 EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN--VD------GELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKK 225 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--CC------cHHHHHHHHHHHcCCceeeecCcchHHHHHHHcCC
Confidence 9999999999876663 446778899999732 11 12246788899999888889999999999999999
Q ss_pred ceEeeCCCCHHHHHHHHHHHHHHHH
Q 015892 262 PEVAADPCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 262 ~v~~~~~~s~~~~~~~~la~~i~~~ 286 (398)
|+.++.|+++++++|.++++++.++
T Consensus 226 pv~~~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 226 TVVEFDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999765
No 8
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=2.9e-34 Score=263.94 Aligned_cols=235 Identities=18% Similarity=0.230 Sum_probs=170.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccc----cc---cCCCCCceeeeccCCe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE---MNPEKRTIIPTEYLGV 116 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~----~~---~~~~~~~i~~~~~~~l 116 (398)
|++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +...++.+... .. .............+|+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 79 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL-LRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGV 79 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch-HHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCe
Confidence 6899999999999999999999999999999999999999975 44445533211 00 0111111122234799
Q ss_pred EEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH-
Q 015892 117 KLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK- 195 (398)
Q Consensus 117 ~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~- 195 (398)
+++|.+.................+++++..+.+..||||||||||+.+..+..+ +.++|.+++|+.|+..++..+.+
T Consensus 80 ~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~~ 157 (246)
T TIGR03371 80 LFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQQ 157 (246)
T ss_pred EEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHHH
Confidence 999965432211111111123456677766643456999999999999887766 56889999999999999999884
Q ss_pred HHHHHhccCC-CeeEEEEccccccCCCceecccCCChHHHHHHHhCCC-eEEecCCChhhhhcccCCCceEeeCCCCHHH
Q 015892 196 GVRMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPEVAADPCGEVA 273 (398)
Q Consensus 196 ~~~~l~~~~~-~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~ 273 (398)
+.+.+..... ...++|+|++.... ...++..+.+.+.++.+ +.+.||++..+.+|...|+|+.++.|+++++
T Consensus 158 ~~~l~~~~~~~~~~~iv~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~~ 231 (246)
T TIGR03371 158 ALALFAGSGPRIGPHFLINQFDPAR------QLSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQAA 231 (246)
T ss_pred HHHHhhcccccccceEEeeccCcch------hhHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHHH
Confidence 4445543332 23789999964332 12234556677788876 3466999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 015892 274 NTFQDLGVCVVQQC 287 (398)
Q Consensus 274 ~~~~~la~~i~~~i 287 (398)
++|++|+++|++++
T Consensus 232 ~~~~~la~~~l~~~ 245 (246)
T TIGR03371 232 HDIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 9
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-34 Score=245.07 Aligned_cols=232 Identities=21% Similarity=0.287 Sum_probs=184.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccccccc-------C--CCCCceeeecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM-------N--PEKRTIIPTEY 113 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~-------~--~~~~~i~~~~~ 113 (398)
|+++|.|+|+||||||||+++||+.+||++|+||++||+|..--+++..+|.+..+... + .....+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 78999999999999999999999999999999999999999888899999998764331 1 11223445667
Q ss_pred CCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHH
Q 015892 114 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 114 ~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~ 193 (398)
++|.++|++.... -..+..+.+...+.++. ..+|||||+|||.|+......+ +..+|.+++|++|+..|+++.
T Consensus 81 ~nL~lLPAsQtrd-Kdalt~E~v~~vv~eL~----~~~fDyIi~DsPAGIE~G~~~A--~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRD-KDALTPEGVKKVVNELK----AMDFDYIIIDSPAGIEQGFKNA--VYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccC-cccCCHHHHHHHHHHHH----hcCCCEEEecCcchHHHHHHhh--hhccceEEEEcCCCccccccc
Confidence 9999999875433 22234444555566653 2689999999999999777665 678899999999999999999
Q ss_pred HHHHHHHhccC----CC---eeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEee
Q 015892 194 AKGVRMFSKLK----VP---CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 266 (398)
Q Consensus 194 ~~~~~~l~~~~----~~---~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~ 266 (398)
.|.+..+.... .. ...+++||+++..-... .--..+++.+.+.+++++.||.+..+-.|.+.|.|+...
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~G----eMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~ 229 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRG----EMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILD 229 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccC----CcccHHHHHHHhCCceEEeecCchhhheecCCCCCeEeC
Confidence 99999887654 22 37899999765442110 012578999999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 015892 267 DPCGEVANTFQDLGVCVVQQ 286 (398)
Q Consensus 267 ~~~s~~~~~~~~la~~i~~~ 286 (398)
+.+.++++|..+|+.++.+
T Consensus 230 -~~~~a~~Ay~d~arRllGe 248 (272)
T COG2894 230 -DNSDAGKAYRDIARRLLGE 248 (272)
T ss_pred -CCchHHHHHHHHHHHHhCC
Confidence 4569999999999887653
No 10
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=100.00 E-value=6.8e-33 Score=259.13 Aligned_cols=224 Identities=19% Similarity=0.159 Sum_probs=165.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc-cccc---------cCCCCCceeeeccCCe
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE---------MNPEKRTIIPTEYLGV 116 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~-~~~~---------~~~~~~~i~~~~~~~l 116 (398)
|+|++ ||||||||+|+|||+.||++|+|||+||+|||++++..+.+... ++.+ .....+..+....+|+
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGV 81 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCe
Confidence 88886 99999999999999999999999999999999988876644321 2110 1111222333446899
Q ss_pred EEEecccCCCcccc--cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 117 KLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 117 ~vlp~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
+++|++........ ........+++.+ ... ++||||||||++++....+. ..+.++|.+++|+.|+..|+.++.
T Consensus 82 ~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~~~sl~~~~ 157 (290)
T CHL00072 82 DCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNGFDALFAAN 157 (290)
T ss_pred EEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechhh-hhhhcCCEEEEEecCCHHHHHHHH
Confidence 99998865433221 1111122233333 222 47999999998876432221 125578999999999999999999
Q ss_pred HHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCC
Q 015892 195 KGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCG 270 (398)
Q Consensus 195 ~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s 270 (398)
++++.++.. +++..++|+|++. .+ ...+++.+.++.+++..||++..+.+|...|+|+.++.|++
T Consensus 158 ~l~~~i~~~~~~~~l~~~gvv~n~~~--~~---------~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s 226 (290)
T CHL00072 158 RIAASVREKARTHPLRLAGLVGNRTS--KR---------DLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVESE 226 (290)
T ss_pred HHHHHHHHHhccCCCceEEEEEeCCC--ch---------hHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCCC
Confidence 998877654 4567899999864 11 34667888899888889999999999999999999999999
Q ss_pred H----HHHHHHHHHHHHHHH
Q 015892 271 E----VANTFQDLGVCVVQQ 286 (398)
Q Consensus 271 ~----~~~~~~~la~~i~~~ 286 (398)
+ ++++|.+|+++|.++
T Consensus 227 ~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 227 PSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred cchhHHHHHHHHHHHHHHhC
Confidence 8 589999999998765
No 11
>PRK13236 nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.9e-33 Score=262.96 Aligned_cols=235 Identities=20% Similarity=0.177 Sum_probs=171.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--ccccc--------CCCCCceeeec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTE 112 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~~~--------~~~~~~i~~~~ 112 (398)
.+++|+| ++||||||||+|+|||+.||++|+|||+||+|+|++++..+++... ++.+. ....+.+....
T Consensus 5 ~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~~~ 83 (296)
T PRK13236 5 NIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVMLTG 83 (296)
T ss_pred CceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhheeC
Confidence 3599999 6799999999999999999999999999999999999998876443 22111 11222233455
Q ss_pred cCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh-hhhhhhhhcCCCeEEEEeCCChhhHH
Q 015892 113 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~-~~~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
..|++++|++....... ..+......++.+.....+++||||+|||++.... .......+.++|.+++|++|+..|+.
T Consensus 84 ~~gv~llpa~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~ 162 (296)
T PRK13236 84 FRGVKCVESGGPEPGVG-CAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMY 162 (296)
T ss_pred CCCeEEEECCCCCCCCC-CcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHH
Confidence 68999999874333211 11111222344444333357999999999654321 11111113488999999999999999
Q ss_pred HHHHHHHHH----hccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l----~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++.+.+ ...+.+..++|+||. +... .....+.+++.++..+++.||++..+.+|...|+|+..+.
T Consensus 163 g~~~~~~~l~k~~~~~~l~i~gIv~Nr~--~~~~------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~~ 234 (296)
T PRK13236 163 AANNIARGILKYAHTGGVRLGGLICNSR--NVDR------EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEYA 234 (296)
T ss_pred HHHHHHHHHHHHhhCCCceeEEEEecCC--CCcc------hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhcC
Confidence 888665533 334577889999983 2211 1135788999999888889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 268 ~~s~~~~~~~~la~~i~~~i 287 (398)
|+++++++|.++++++.++.
T Consensus 235 p~s~~a~~y~~La~ell~~~ 254 (296)
T PRK13236 235 PDSNQGNEYRALAKKIINND 254 (296)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999987755
No 12
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=3.3e-33 Score=260.49 Aligned_cols=235 Identities=20% Similarity=0.210 Sum_probs=169.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--ccc---cc--CC--CCCceeeeccC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLL---EM--NP--EKRTIIPTEYL 114 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~---~~--~~--~~~~i~~~~~~ 114 (398)
||+|+|. +||||||||+|+|||.+||++|+||++||+|||++++..+++... ++. .. .. ....+.....+
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFG 79 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCC
Confidence 6899999 699999999999999999999999999999999988877654221 111 10 00 12223344568
Q ss_pred CeEEEecccCCCcccccCCcc--HHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCChhhHH
Q 015892 115 GVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
|++++|++............. ....++. +..+. +.||||||||++.+..... ....+.++|.+++|++|+..++.
T Consensus 80 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~ 157 (270)
T cd02040 80 GIKCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 157 (270)
T ss_pred CeEEEeCCCCCCCCCCcCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHH
Confidence 999999875443221111111 1112333 33333 7899999999875531111 11112368999999999999999
Q ss_pred HHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.+..+ +.+..++|.|+.. . ..+.+..+++.+.++.++++.||++..+.+|...|+|+.++.
T Consensus 158 ~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~~ 229 (270)
T cd02040 158 AANNICKGILKYAKSGGVRLGGLICNSRN--T------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEYD 229 (270)
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEecCC--C------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEec
Confidence 998887766543 4667788888732 1 122346788888999888889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGVCVVQQCAK 289 (398)
Q Consensus 268 ~~s~~~~~~~~la~~i~~~i~~ 289 (398)
|+++++++|.++++++.++.+.
T Consensus 230 p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 230 PESKQADEYRELARKIVENKLL 251 (270)
T ss_pred CCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886554
No 13
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=263.69 Aligned_cols=233 Identities=17% Similarity=0.171 Sum_probs=169.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--cccc--------cCCCCCceeeec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTE 112 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~~--------~~~~~~~i~~~~ 112 (398)
.|++|+|. +||||||||+++|||..|+++|+|||+||+|||++++..+++... ++.+ .+...+.++.+.
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 46999997 999999999999999999999999999999999999876654321 2111 111222333455
Q ss_pred cCCeEEEecccCCCcccccCCccHHHHHH-HHHhhcc-CCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCChhh
Q 015892 113 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLA 189 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~~~~~~~~~~l~-~ll~~~~-~~~yD~VIID~pp~~~~~~~-~~~~~~a~d~viiv~~p~~~s 189 (398)
.+|+++||++...... ........++ ..++.+. .++||||||||++++....+ ..+...++|.+++|++|+..|
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6899999986533321 1111122333 2343321 26899999999654321111 110013789999999999999
Q ss_pred HHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEe
Q 015892 190 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 265 (398)
Q Consensus 190 ~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~ 265 (398)
+.++.++++.+.+. +++..++|+|+.+.. ..++..+.+.+.++.+++..||++..+.+|...|+|+.+
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~--------~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~ 230 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTD--------RELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIE 230 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCc--------hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEE
Confidence 99999998877654 456789999964311 123467888888998888889999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 015892 266 ADPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 266 ~~~~s~~~~~~~~la~~i~~~i 287 (398)
+.|+++++++|.+|+++++++.
T Consensus 231 ~~p~s~aa~~y~~La~ell~~~ 252 (295)
T PRK13234 231 YAPDSKQAGEYRALAEKIHANS 252 (295)
T ss_pred ECCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999997764
No 14
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-33 Score=258.20 Aligned_cols=229 Identities=18% Similarity=0.159 Sum_probs=165.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCC-cccccc---------cCCCCCceeeec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE---------MNPEKRTIIPTE 112 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~-~~~~~~---------~~~~~~~i~~~~ 112 (398)
|+++|+|. +||||||||+|+|||.+||++|+|||+||+|||++.+..+.+. ..++.+ .+...+.+....
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~ 79 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYEG 79 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheeeC
Confidence 78999999 6999999999999999999999999999999999877655321 111111 111122223344
Q ss_pred cCCeEEEecccCCCcccc--cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCChhh
Q 015892 113 YLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLA 189 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~~~s 189 (398)
.+|++++|++........ .........++.+ .+ +++||||||||++++.... ..+ +.++|.+++|++|+..+
T Consensus 80 ~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~~~~--l~~AD~viip~~~~~~s 154 (270)
T PRK13185 80 YNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGFAAP--LQYADYALIVTANDFDS 154 (270)
T ss_pred CCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcccch--hhhCcEEEEEecCchhh
Confidence 689999998765432211 1111111233331 12 3789999999987664322 222 45789999999999999
Q ss_pred HHHHHHHHHHHhc----cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEe
Q 015892 190 FIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 265 (398)
Q Consensus 190 ~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~ 265 (398)
+.++.++++.+.. .+++..++|+|++.. ....+++.+.++.+++..||++..+.+|...|+|+.+
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~ 223 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFE 223 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----------HHHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhh
Confidence 9999998887653 356678999999531 1246778888998888889999999999999999999
Q ss_pred eCCCC----HHHHHHHHHHHHHHHHHH
Q 015892 266 ADPCG----EVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 266 ~~~~s----~~~~~~~~la~~i~~~i~ 288 (398)
+.|++ +++++|.++++++.++..
T Consensus 224 ~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 224 MEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred hCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 98864 478999999999876543
No 15
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=5.6e-33 Score=259.81 Aligned_cols=234 Identities=18% Similarity=0.164 Sum_probs=164.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc-ccccc--------CCCCCceeeeccC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLEM--------NPEKRTIIPTEYL 114 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~-~~~~~--------~~~~~~i~~~~~~ 114 (398)
|++|+|+ +||||||||+|+|||++||++|+|||+||+|||++++..+.+... ++.+. ....+.+. ..++
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~-~~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIY-EGFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHhee-eCCC
Confidence 6899999 799999999999999999999999999999999998887644211 11110 11122333 4578
Q ss_pred CeEEEecccCCCcccccCCccH--HHHHHHHHhhccCCCCcEEEEcCCCCCChhh-hhhhhhcCCCeEEEEeCCChhhHH
Q 015892 115 GVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
|++++|++.............. ...++. +..+.+..||||||||++++.... .....+.++|.+++|++|+..|+.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 9999998754332111111111 112222 222222479999999977543211 111113468999999999999999
Q ss_pred HHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.+... +.++.+++.|+ +... ...+..+.+++.++.++++.||++..+.+|...|+|+.++.
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~-r~~~-------~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNG-RSVI-------DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEec-cCCC-------chhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 999887766543 45556777553 1111 01246788899999888889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 268 ~~s~~~~~~~~la~~i~~~i~ 288 (398)
|+++++++|.++++++.++..
T Consensus 230 p~~~~a~~y~~La~ell~~~~ 250 (279)
T PRK13230 230 PDSEISNIFRELAEAIYENNT 250 (279)
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999987533
No 16
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=5.7e-33 Score=258.81 Aligned_cols=231 Identities=17% Similarity=0.227 Sum_probs=173.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc----ccc---cC-CCCCceee-ecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLE---MN-PEKRTIIP-TEY 113 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~----~~~---~~-~~~~~i~~-~~~ 113 (398)
|+|+|+|.|+||||||||+|+|||+.||++|++|++||+|+|++++..++|.+.. +.+ .. ...+.+.. ...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 6899999999999999999999999999999999999999998888888776532 111 11 11122222 235
Q ss_pred CCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHH
Q 015892 114 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 114 ~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~ 193 (398)
+|++++|++.... ..... ...+.++++.+....||||||||||+++..+..+ +.++|.+++|++|+..++.++
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 8999999875431 11111 1223455554432479999999999999887766 568899999999999999999
Q ss_pred HHHHHHHhccC-------CC-eeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEe
Q 015892 194 AKGVRMFSKLK-------VP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 265 (398)
Q Consensus 194 ~~~~~~l~~~~-------~~-~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~ 265 (398)
.++++.+.... .+ ..++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~- 228 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI- 228 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhh----cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-
Confidence 99999876421 12 2578889865332110 01124678888899888899999999999999999998
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 015892 266 ADPCGEVANTFQDLGVCVVQ 285 (398)
Q Consensus 266 ~~~~s~~~~~~~~la~~i~~ 285 (398)
+.++++.+++|++|++++.+
T Consensus 229 ~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 229 LDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred eCCCCHHHHHHHHHHHHHhC
Confidence 67888999999999998754
No 17
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=100.00 E-value=8.6e-33 Score=256.30 Aligned_cols=229 Identities=24% Similarity=0.362 Sum_probs=174.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc----ccc---cC-CCCCceee-eccC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLE---MN-PEKRTIIP-TEYL 114 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~----~~~---~~-~~~~~i~~-~~~~ 114 (398)
+|+|+|+|+||||||||+|+|||..|+++|+||++||+|+|++++..+++.+.. +.+ .. ...+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 589999999999999999999999999999999999999997777777775432 111 11 11111111 1347
Q ss_pred CeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 115 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
+++++|++..... .... ...+.++++.+. +.||||||||||+++.....+ +.++|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 9999997653221 1111 123555555553 789999999999998776655 5688999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHH
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 274 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~ 274 (398)
++++.+...+....++|+|++........ .....+++.+.++.++++.||++..+.+|...|+|+.++.+ +++++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~ 227 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKG----DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGK 227 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccc----cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHH
Confidence 99999988876678999999754321110 11236778888998888999999999999999999998765 89999
Q ss_pred HHHHHHHHHHH
Q 015892 275 TFQDLGVCVVQ 285 (398)
Q Consensus 275 ~~~~la~~i~~ 285 (398)
+|.+|+++|.+
T Consensus 228 ~~~~La~~l~~ 238 (261)
T TIGR01968 228 AFENIARRILG 238 (261)
T ss_pred HHHHHHHHHhc
Confidence 99999998864
No 18
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=100.00 E-value=2.7e-33 Score=272.99 Aligned_cols=236 Identities=20% Similarity=0.187 Sum_probs=170.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--------ccc-------cCCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLE-------MNPEKR 106 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--------~~~-------~~~~~~ 106 (398)
..++||+|.|.||||||||+|+|||..||++|+|||+||+|||++.+. ++|.... +.. .....+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~-~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~ 197 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSA-LLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHH-HcCCCccccccccccHHHHHhccccCCCHHH
Confidence 357999999999999999999999999999999999999999976544 4453221 110 112233
Q ss_pred ceeeeccCCeEEEecccCCCccccc----------CCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCC
Q 015892 107 TIIPTEYLGVKLVSFGFSGQGRAIM----------RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 176 (398)
Q Consensus 107 ~i~~~~~~~l~vlp~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~ 176 (398)
.+.++.++|++++|++......+.. ........|++.++.+. +.||||||||||+++..+.++ +.++
T Consensus 198 ~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~~a--l~aA 274 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTLSG--LCAA 274 (405)
T ss_pred heeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHHHH--HHHc
Confidence 4556677999999987543322111 00112245777777774 799999999999999887766 6789
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHH-------hcc--C--CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-
Q 015892 177 TAAVIVTTPQKLAFIDVAKGVRMF-------SKL--K--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 244 (398)
Q Consensus 177 d~viiv~~p~~~s~~~~~~~~~~l-------~~~--~--~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 244 (398)
|.+|+|+.|+..++.++..+++.+ .+. + .+.+++|+|++.... ..+++..+.+.+.++..++
T Consensus 275 d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~------~~~~~~~~~l~~~~~~~vl~ 348 (405)
T PRK13869 275 TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD------APQTKVAALLRNMFEDHVLT 348 (405)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC------cHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999988887632 221 2 346789999964332 2334577888888886554
Q ss_pred EecCCChhhhhcccCCCceEeeCCCCHHH-------HHHHHHHHHHHHHH
Q 015892 245 FDLPIRPTLSASGDSGMPEVAADPCGEVA-------NTFQDLGVCVVQQC 287 (398)
Q Consensus 245 ~~ip~~~~i~~a~~~g~~v~~~~~~s~~~-------~~~~~la~~i~~~i 287 (398)
..||.+..+.+|...|+|+.++.|.+... +.+..++.||.+.+
T Consensus 349 ~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~~~~~~~~~ei~~~~ 398 (405)
T PRK13869 349 NPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEALI 398 (405)
T ss_pred CcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999875434 44444444544444
No 19
>PRK10037 cell division protein; Provisional
Probab=100.00 E-value=7.4e-33 Score=254.80 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=158.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--------ccccCCCCCceeeeccCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 115 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--------~~~~~~~~~~i~~~~~~~ 115 (398)
|++|+|.|.||||||||+|+|||..||++|+|||+||+|+|++.+. ++|.... +.......+.+.. ..+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRL-SFNVDFTHRQGWARALLDGQDWRDAGLR-YTSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHH-HhCCCccccchHHHHHhcCCCchhhhcc-ccCC
Confidence 5799999999999999999999999999999999999999975443 3343211 1111122222233 2479
Q ss_pred eEEEecccCCC-cccccCC-ccHHHHHHHHHhhccC-CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHH
Q 015892 116 VKLVSFGFSGQ-GRAIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 116 l~vlp~~~~~~-~~~~~~~-~~~~~~l~~ll~~~~~-~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
+++||++.... +...... ......+...++.+.. ..||||||||||+.+..+..+ +.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~a--l~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQL--LSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHH--HHhCCEEEEEcCcCHHHH--
Confidence 99999852111 0000000 0111235555555521 689999999999999877666 668899999999987653
Q ss_pred HHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHh---CCCeE-EecCCChhhhhcccCCCceEeeCC
Q 015892 193 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHL-FDLPIRPTLSASGDSGMPEVAADP 268 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~ 268 (398)
++..+........+++|++.... +..+++.+.+ +.+++ ..||.+..+.+|...|+|+.++.|
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~~----------~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~ 220 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIGS----------QLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRS 220 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCccc----------HHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCC
Confidence 33333322234567788864211 2344444444 44444 359999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q 015892 269 CGEVANTFQDLGVCVVQQCAKIRQ 292 (398)
Q Consensus 269 ~s~~~~~~~~la~~i~~~i~~~~~ 292 (398)
+++++++|+.|++++++.++-++.
T Consensus 221 ~s~aa~~~~~l~~el~~~~~~~~~ 244 (250)
T PRK10037 221 DSLAAEEILTLANWCLLHYSGLKT 244 (250)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999887643
No 20
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=2e-32 Score=249.67 Aligned_cols=233 Identities=27% Similarity=0.327 Sum_probs=183.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH-HHHHHHCCCcEEEEEecCCCCCCCcccCCcccc------cccCC-CCCceeeeccC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMNP-EKRTIIPTEYL 114 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nL-A~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~------~~~~~-~~~~i~~~~~~ 114 (398)
|+++|+|.|+||||||||+|+|| |..++.+|++|++||+|+..++++.++|.+... ..... ..+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 67999999999999999999999 555556788889999999999999999877531 22232 33444444449
Q ss_pred CeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 115 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
|+++||++....+...+..+.....+..+ ...|||||||||+|++..+... +..+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l-----~~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKEL-----EELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHH-----HhcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 99999998887776666666666666666 3778999999999999888766 4566999999999999999999
Q ss_pred HHHHHHhccCCCeeE--EEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHH
Q 015892 195 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 272 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~--vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~ 272 (398)
.+++.+...+....+ +|+|+++....... ......+...++ +.+..+|+++.+.++...|.|+..+.|++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~----~~~~~~~~~~~~--~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~a 227 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVD----VAALLIQVVKQV--PVLQVIPFDPEVRRALAEGKPIVLYSPNSKA 227 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhH----HHHHHHHHHHhC--CceeEeccChHHHHHhhcCCcEEEeCCCCHH
Confidence 999999999988777 99999863222210 001223333333 3678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015892 273 ANTFQDLGVCVVQQCA 288 (398)
Q Consensus 273 ~~~~~~la~~i~~~i~ 288 (398)
++++.++|..+.+...
T Consensus 228 s~ai~~lA~~l~~~~~ 243 (262)
T COG0455 228 SQAIKELAAKLAGLPE 243 (262)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999887543
No 21
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=100.00 E-value=2.2e-32 Score=255.39 Aligned_cols=233 Identities=20% Similarity=0.222 Sum_probs=165.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---cccC----CCCCceeeeccCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN----PEKRTIIPTEYLG 115 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~~~~----~~~~~i~~~~~~~ 115 (398)
++|+|+ +||||||||+|+|||.+||++|+||++||+|||++++..+++.... + .... ...+.+......|
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 79 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCC
Confidence 579998 5999999999999999999999999999999999988776553221 1 1111 1222344556789
Q ss_pred eEEEecccCCCcccccCCccH--HHHHHHHHhhccCCCCcEEEEcCCCCCChhhh-hhhhhcCCCeEEEEeCCChhhHHH
Q 015892 116 VKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~-~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
++++|++.............. ..+++. +..+. ++||||||||++....... ......++|.+++|++|+..++.+
T Consensus 80 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~ 157 (275)
T TIGR01287 80 IRCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYA 157 (275)
T ss_pred EEEEeCCCCCccCCCccchhhhHHHHHHH-hhhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHH
Confidence 999997643322111010000 123333 23333 6899999999765531111 111123789999999999999999
Q ss_pred HHHHHHHHhc----cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCC
Q 015892 193 VAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 268 (398)
Q Consensus 193 ~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~ 268 (398)
+.++++.+.. .+.+..++|.|+.. . ....+..+++.+.++.++++.||++..+.+|...|+|+.++.|
T Consensus 158 ~~~l~~~i~~~~~~~~~~~~giv~n~~~--~------~~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (275)
T TIGR01287 158 ANNICKGILKYAKSGGVRLGGLICNSRN--V------DDEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDP 229 (275)
T ss_pred HHHHHHHHHHHHhcCCCeeeEEEEcCCC--C------chHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeCC
Confidence 9888765543 35566778888621 1 1122456788888988888899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 015892 269 CGEVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 269 ~s~~~~~~~~la~~i~~~i~ 288 (398)
+++++++|+++++++.++++
T Consensus 230 ~s~~a~~~~~la~ell~~~~ 249 (275)
T TIGR01287 230 ESEQANEYRELAKKIYENTE 249 (275)
T ss_pred CCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988653
No 22
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=1.9e-32 Score=254.35 Aligned_cols=234 Identities=19% Similarity=0.159 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc-cc---ccc--CCCCCceeeeccCCe
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RL---LEM--NPEKRTIIPTEYLGV 116 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~-~~---~~~--~~~~~~i~~~~~~~l 116 (398)
.||+|+|. +||||||||+|+|||..||++| |||+||+|||++++..+++... ++ ... ....+.+....++|+
T Consensus 1 ~~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (264)
T PRK13231 1 VMKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGI 78 (264)
T ss_pred CceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCe
Confidence 37899999 6999999999999999999999 9999999999988876654321 11 111 112223344557899
Q ss_pred EEEecccCCCcccccCCc-cHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 117 KLVSFGFSGQGRAIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 117 ~vlp~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~-~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
+++|++............ .....+.+.+..+ ++.||||||||++.+...... .....++|.+++|++|+..|+.++.
T Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~ 157 (264)
T PRK13231 79 LCVESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAAN 157 (264)
T ss_pred EEEEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHH
Confidence 999976433211111111 0111123334444 378999999997755311110 1112478999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHH
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 274 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~ 274 (398)
++++.++..+....++|.|+.. .. ...+..+++.+.++.+++..||++..+.+|...|+|+.++.|++++++
T Consensus 158 ~~~~~i~~~~~~~~~vv~~~~~--~~------~~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~ 229 (264)
T PRK13231 158 NIARGIKKLKGKLGGIICNCRG--ID------NEVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQAS 229 (264)
T ss_pred HHHHHHHHcCCcceEEEEcCCC--Cc------cHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHHH
Confidence 9999998877666788888743 21 122467888888988778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 015892 275 TFQDLGVCVVQQC 287 (398)
Q Consensus 275 ~~~~la~~i~~~i 287 (398)
+|.+++++|.+++
T Consensus 230 ~~~~la~el~~~~ 242 (264)
T PRK13231 230 VYRKLANNIMNNT 242 (264)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999865
No 23
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=100.00 E-value=2.2e-32 Score=254.48 Aligned_cols=227 Identities=19% Similarity=0.168 Sum_probs=164.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCC-cccc---c------ccCCCCCceeeeccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRL---L------EMNPEKRTIIPTEYL 114 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~-~~~~---~------~~~~~~~~i~~~~~~ 114 (398)
++|+|. +||||||||+|+|||++||++|+|||+||+|||++++..+.+. ..++ . ..+...+.++....+
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYG 79 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCC
Confidence 368888 7999999999999999999999999999999999877655332 1111 1 111122223345568
Q ss_pred CeEEEecccCCCccc--ccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCChhhHH
Q 015892 115 GVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
|+++||++....... .........+++.+ .+ .+.||||||||++++... ...+ +.++|.+++|+.|+..++.
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~~~--l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 80 GVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFATP--LQYADYALVVAANDFDALF 154 (268)
T ss_pred CeEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccccc--hhhcCEEEEEecCchhHHH
Confidence 999999875543211 11111122333332 12 368999999998876432 2222 5678999999999999999
Q ss_pred HHHHHHHHHhc----cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.+.. .+++..++|+||+... +..+++.+.++.+++..||.+..+.+|...|+|+.++.
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~ 223 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEME 223 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhC
Confidence 99998887664 3466789999996432 24677788889888888999999999999999999998
Q ss_pred CCC----HHHHHHHHHHHHHHHHHH
Q 015892 268 PCG----EVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 268 ~~s----~~~~~~~~la~~i~~~i~ 288 (398)
|++ .++++|+++++++.++..
T Consensus 224 ~~~~~~~~~a~~~~~la~el~~~~~ 248 (268)
T TIGR01281 224 ESGPELAAVTQEYLRMAEYLLAGPE 248 (268)
T ss_pred cccccchHHHHHHHHHHHHHHhcCC
Confidence 765 367899999999877544
No 24
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-32 Score=255.12 Aligned_cols=237 Identities=22% Similarity=0.304 Sum_probs=175.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCCCCCCCcccCCccc-------ccccCC---CCCceeee
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR-------LLEMNP---EKRTIIPT 111 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q~~~~~~~l~~~~~-------~~~~~~---~~~~i~~~ 111 (398)
||++|+|+|.||||||||+|+|||.+|| .+|+|||+||+|||++++..+ +.... +..... .......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWL-GLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhc-CCCcccchhHHHHHhcccccccchhccc-
Confidence 6899999999999999999999999999 667999999999997655544 43222 111111 1111222
Q ss_pred ccCCeEEEecccCCCc--ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh
Q 015892 112 EYLGVKLVSFGFSGQG--RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 189 (398)
Q Consensus 112 ~~~~l~vlp~~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s 189 (398)
..++++++|+.....+ ............++.++..+ .++||||||||||+++..+.++ +.++|.+++|+.|+..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~l~~na--l~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGVLTLNA--LAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhHHHHHH--HHHcCeeEEecCchHHH
Confidence 4689999998755431 11111223444566665544 3799999999999998887776 66889999999999999
Q ss_pred HHHHHHHHHHHhccC------CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCe-EEecCCChhhhhcccCCCc
Q 015892 190 FIDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH-LFDLPIRPTLSASGDSGMP 262 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~------~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ip~~~~i~~a~~~g~~ 262 (398)
+.++..+++.+.... ....++++|+...... ...+..+.+.+.++.+. ...||.+..++++...|.+
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~ 229 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTK------LADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKP 229 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcc------hHHHHHHHHHHHhccccccccCcccccHHhHHHcCCC
Confidence 999998777765542 2567888888544331 23356677777776443 3559999999999999999
Q ss_pred eEeeCCCCHHHHHHHHHHHHHHHHHHHh
Q 015892 263 EVAADPCGEVANTFQDLGVCVVQQCAKI 290 (398)
Q Consensus 263 v~~~~~~s~~~~~~~~la~~i~~~i~~~ 290 (398)
+..+.++++.+++|.+++.++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 230 LYEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred ceecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999988653
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=100.00 E-value=1.3e-31 Score=249.21 Aligned_cols=225 Identities=20% Similarity=0.168 Sum_probs=162.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCC-ccccc---------ccCCCCCceeeeccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLL---------EMNPEKRTIIPTEYL 114 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~-~~~~~---------~~~~~~~~i~~~~~~ 114 (398)
++|+|. +||||||||+|+|||+.||++|+|||+||+|||++.+..+.+. ..++. ..+.....++...++
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYG 79 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheEEECCC
Confidence 478888 5999999999999999999999999999999998766555321 11211 111222333345568
Q ss_pred CeEEEecccCCCcccc--cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCChhhHH
Q 015892 115 GVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
|++++|++........ ........+++.+ . . .+.||||||||++++... ...+ +.++|.+++|++|+..++.
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~~~a--l~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 80 GVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGFAAP--LNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccchhh--hhhcCEEEEEecCCcccHH
Confidence 9999998754322111 1111112233332 1 2 368999999998876533 2222 5578999999999999999
Q ss_pred HHHHHHHHHhc----cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 192 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 192 ~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
++.++++.++. .+++..++|+||+... ...+++.+.++.+++..||++..+.+|...|+|+.++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~ 223 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMD 223 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhC
Confidence 99998877664 3566788999996421 24567778889888888999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHH
Q 015892 268 PCGEV----ANTFQDLGVCVVQQ 286 (398)
Q Consensus 268 ~~s~~----~~~~~~la~~i~~~ 286 (398)
|+++. +++|.+|+++++++
T Consensus 224 ~~~~~a~e~a~~y~~La~~il~~ 246 (267)
T cd02032 224 ESDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred cccccccHHHHHHHHHHHHHHhc
Confidence 88764 67899999888664
No 26
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.98 E-value=1.3e-31 Score=259.64 Aligned_cols=240 Identities=16% Similarity=0.148 Sum_probs=170.4
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe-cCCCCCCCcccCCccc--------cc----c-cCCCC
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENR--------LL----E-MNPEK 105 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl-D~q~~~~~~~l~~~~~--------~~----~-~~~~~ 105 (398)
...+++||+|.|.||||||||+|+|||+.||++|+|||+||+ |||++++.. +|.... +. . .....
T Consensus 102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (388)
T PRK13705 102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMY-HGWVPDLHIHAEDTLLPFYLGEKDDAT 180 (388)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhh-cCcCccccccccccHHHHHhcCCCchh
Confidence 335789999999999999999999999999999999999996 999986643 343211 10 0 01123
Q ss_pred CceeeeccCCeEEEecccCCCcccc-----cC----CccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCC
Q 015892 106 RTIIPTEYLGVKLVSFGFSGQGRAI-----MR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 176 (398)
Q Consensus 106 ~~i~~~~~~~l~vlp~~~~~~~~~~-----~~----~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~ 176 (398)
..+.++.++|+++||++......+. .. .......++..++.+. ++||||||||||+++..+.++ +.++
T Consensus 181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~na--l~Aa 257 (388)
T PRK13705 181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTINV--VCAA 257 (388)
T ss_pred hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHHH--HHHc
Confidence 3455666799999998643321110 00 0123456777777664 889999999999999888776 6688
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHHhcc-------C-CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-Eec
Q 015892 177 TAAVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDL 247 (398)
Q Consensus 177 d~viiv~~p~~~s~~~~~~~~~~l~~~-------~-~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~i 247 (398)
|.+++|+.|+..++.++..+++.+..+ + .+.+.+++|++...... ......+.+.+.||..++ ..|
T Consensus 258 D~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-----~~~~~~~~l~~~~~~~vl~~~I 332 (388)
T PRK13705 258 DVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGS-----QSPWMEEQIRDAWGSMVLKNVV 332 (388)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCch-----HHHHHHHHHHHHhccccccccC
Confidence 999999999999999888877766542 1 13356889985432211 111245678888886544 358
Q ss_pred CCChhhhhcccCCCceEeeCCCC--------HHHHHHHHHHHHHHHHHH
Q 015892 248 PIRPTLSASGDSGMPEVAADPCG--------EVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 248 p~~~~i~~a~~~g~~v~~~~~~s--------~~~~~~~~la~~i~~~i~ 288 (398)
|.+..+.+|...+++++++.+.. .+.+.+..+.++|.+++-
T Consensus 333 ~~s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~~ 381 (388)
T PRK13705 333 RETDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLI 381 (388)
T ss_pred cccchHhhhhhcCCCceeEccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998643 245566666777666553
No 27
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=2.4e-31 Score=237.80 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=170.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--------ccccCCCCCceeeeccCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 115 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--------~~~~~~~~~~i~~~~~~~ 115 (398)
|++|++.|.||||||||+|+|||+.|++.|++|++||+|||+ .+...||.... ........+.. ....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~-~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAA-YRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHh-hccCCC
Confidence 789999999999999999999999999999999999999984 66666665532 12222222222 334589
Q ss_pred eEEEecccCCCcccc-c--CCccHHHHHHHHHhhcc-CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHH
Q 015892 116 VKLVSFGFSGQGRAI-M--RGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 116 l~vlp~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~-~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
++++|.|........ + .... ...+.+.+..+. ...||+||||||++.+..+..+ +..+|.+++|+.|+..|..
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~-~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~~ 155 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQD-PQWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASHA 155 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcC-HHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHHH
Confidence 999998754332211 1 1111 122333333332 4789999999999999888777 5578999999999999976
Q ss_pred HHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCH
Q 015892 192 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGE 271 (398)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~ 271 (398)
.+.+. .+. ...++|+|++.... .++++....+++.++......|+.|+.+.||...++|+.+|+|.|.
T Consensus 156 ~L~q~-----~l~-~~~~~liNq~~~~s------~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~ 223 (243)
T PF06564_consen 156 RLHQR-----ALP-AGHRFLINQYDPAS------QLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQ 223 (243)
T ss_pred HHHHh-----ccc-CCcEEEEeccCccc------hHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccCH
Confidence 55431 122 23588999954443 4556777777888876666789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015892 272 VANTFQDLGVCVVQQCAK 289 (398)
Q Consensus 272 ~~~~~~~la~~i~~~i~~ 289 (398)
++++|..||.+++.+...
T Consensus 224 Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 224 AAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999877653
No 28
>PHA02518 ParA-like protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=238.66 Aligned_cols=204 Identities=22% Similarity=0.261 Sum_probs=150.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
++|+|+|.||||||||+|+|||++|+++|+||++||+|||++++.++-.... +.+++|....
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~------------------~~~~i~~~~~ 62 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREE------------------GEPLIPVVRM 62 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhccc------------------CCCCCchhhc
Confidence 5899999999999999999999999999999999999999977665311100 0011221100
Q ss_pred CCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc-
Q 015892 125 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 203 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~- 203 (398)
. ..+...+..+ ...||||||||||+.+.....+ +.++|.+++|+.|+..++.++.++++.+...
T Consensus 63 --------~----~~~~~~l~~~-~~~~d~viiD~p~~~~~~~~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 63 --------G----KSIRADLPKV-ASGYDYVVVDGAPQDSELARAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred --------c----HHHHHHHHHH-hccCCEEEEeCCCCccHHHHHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 1 1233333333 3789999999999999887766 5588999999999999999988888776643
Q ss_pred ----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe-cCCChhhhhcccCCCceEeeCCCCHHHHHHHH
Q 015892 204 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-LPIRPTLSASGDSGMPEVAADPCGEVANTFQD 278 (398)
Q Consensus 204 ----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~ 278 (398)
+.+..++|.|+....... .. ...+..+.++.+++.. ++.+..+.+|...|+++.++.|.++++++|.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~~------~~-~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~~~~ 200 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQL------YR-EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQ 200 (211)
T ss_pred hhCCCCceEEEEEeccCCcchH------HH-HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHHHHH
Confidence 355678888885322211 11 2333344456666655 55567999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 015892 279 LGVCVVQQCA 288 (398)
Q Consensus 279 la~~i~~~i~ 288 (398)
|++|+.+++.
T Consensus 201 l~~ei~~~~~ 210 (211)
T PHA02518 201 LVKELFRGIS 210 (211)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 29
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.97 E-value=4.5e-31 Score=255.21 Aligned_cols=237 Identities=18% Similarity=0.180 Sum_probs=168.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe-cCCCCCCCcccCCcccc-----------ccc--CCCCCc
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL-----------LEM--NPEKRT 107 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl-D~q~~~~~~~l~~~~~~-----------~~~--~~~~~~ 107 (398)
+.++||+|+|.||||||||+|+|||+.||++|+|||+||+ |||++.+. ++|..... ... ......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~-~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASM-YHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCccc-ccCcCccccccccccHHHHHhCCCcchHhh
Confidence 4579999999999999999999999999999999999996 99998665 44432211 001 112334
Q ss_pred eeeeccCCeEEEecccCCCcccc--c----CC---ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCe
Q 015892 108 IIPTEYLGVKLVSFGFSGQGRAI--M----RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 178 (398)
Q Consensus 108 i~~~~~~~l~vlp~~~~~~~~~~--~----~~---~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~ 178 (398)
+.++.++|+++||++......+. . .. ......++..++.+. ++||||||||||+++..+.++ +.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~nA--L~AAd~ 259 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTINV--VCAADV 259 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHHH--HHHhCE
Confidence 55667799999998754321111 0 00 123345777777764 899999999999999888776 678899
Q ss_pred EEEEeCCChhhHHHHHHHHHHHhcc-------C-CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-EecCC
Q 015892 179 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 249 (398)
Q Consensus 179 viiv~~p~~~s~~~~~~~~~~l~~~-------~-~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ip~ 249 (398)
+++|+.|+..++.++.++++.+..+ + .+.+.+++|++. .+.. ...+...+.+.+.||..++ ..||.
T Consensus 260 vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~--~~~~---~~~~~i~~~l~~~~g~~vl~~~I~~ 334 (387)
T PHA02519 260 IVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYS--LTVG---NQSRWMEEQIRNTWGSMVLRQVVRV 334 (387)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeEC--CCCc---hHHHHHHHHHHHHhccccccccCcC
Confidence 9999999999999887766655321 1 234668999854 3211 1112356778889986655 44888
Q ss_pred ChhhhhcccCCCceEeeCCCC--------HHHHHHHHHHHHHHHHH
Q 015892 250 RPTLSASGDSGMPEVAADPCG--------EVANTFQDLGVCVVQQC 287 (398)
Q Consensus 250 ~~~i~~a~~~g~~v~~~~~~s--------~~~~~~~~la~~i~~~i 287 (398)
+..+.+|...+++++++.+.+ .+.+.+..+.++|.+++
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~~~ 380 (387)
T PHA02519 335 TDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFNDL 380 (387)
T ss_pred cchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988655 24556666666666533
No 30
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.97 E-value=3e-31 Score=258.75 Aligned_cols=234 Identities=21% Similarity=0.210 Sum_probs=165.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccc-----------c----ccCCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-----------L----EMNPEKR 106 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~-----------~----~~~~~~~ 106 (398)
+.+++|+|.|.||||||||+|+|||.+||++|+|||+||+|||++.+ .+++..... . ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLS-ALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHH-HHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 46799999999999999999999999999999999999999997644 444432211 0 0112233
Q ss_pred ceeeeccCCeEEEecccCCCccccc------C----CccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCC
Q 015892 107 TIIPTEYLGVKLVSFGFSGQGRAIM------R----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 176 (398)
Q Consensus 107 ~i~~~~~~~l~vlp~~~~~~~~~~~------~----~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~ 176 (398)
.+.++..+|++++|++......+.. . .......+...+..+. +.||||||||||+++..+.++ +.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~a--l~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLSA--LCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHHH--HHHc
Confidence 4455567899999976432211110 0 0112234666666664 899999999999999877766 6688
Q ss_pred CeEEEEeCCChhhHHHHHHHHHH-------Hhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-
Q 015892 177 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 244 (398)
Q Consensus 177 d~viiv~~p~~~s~~~~~~~~~~-------l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~- 244 (398)
|.+|+|+.|+..++.++..+++. ++.. +....++|+|++.... ..+++..+.+.+.++..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~------~~~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPND------GPQAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCC------ccHHHHHHHHHHHhcccccc
Confidence 99999999999888877655443 2322 2346789999965433 1233566778888886655
Q ss_pred EecCCChhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 015892 245 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 285 (398)
Q Consensus 245 ~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~ 285 (398)
..||.+..+.+|...|.|++++.|++..+++|.+..+++.+
T Consensus 332 ~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~ 372 (387)
T TIGR03453 332 NPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDA 372 (387)
T ss_pred ccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999886545555555544444
No 31
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.97 E-value=6.5e-30 Score=243.86 Aligned_cols=220 Identities=20% Similarity=0.233 Sum_probs=168.1
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--cc--cc---CCC-----CCc
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL--EM---NPE-----KRT 107 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~~--~~---~~~-----~~~ 107 (398)
..+++++|+|+|.||||||||+|+|||..|+++|+||++||+|+|++++..++|.+.. +. .. ... ...
T Consensus 89 ~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (322)
T TIGR03815 89 PPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD 168 (322)
T ss_pred CCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence 3457899999999999999999999999999999999999999999988888876532 11 00 000 001
Q ss_pred eeeeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015892 108 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 108 i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
..+. .+|+++++++.... ... ....++.+++.+ ++.||||||||||+.+..+..+ +.++|.+++|++|+.
T Consensus 169 ~~~~-~~~l~vl~~~~~~~--~~~----~~~~l~~~l~~l-~~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~ 238 (322)
T TIGR03815 169 ALPR-RGGLSVLSWGRAVG--AAL----PPAAVRAVLDAA-RRGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADV 238 (322)
T ss_pred hCCC-cCCeEEEecCCCCc--CCC----CHHHHHHHHHHH-HhcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcH
Confidence 1222 47999999775431 111 234455566555 4889999999999999876665 568899999999999
Q ss_pred hhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeC
Q 015892 188 LAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 267 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~ 267 (398)
.++.++.++++.+...+. .+.+|+|+.. . . ....+++++.+|.+++..||++..+.++...|+++. ..
T Consensus 239 ~sl~~a~r~l~~l~~~~~-~~~lVv~~~~--~-~-------~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~ 306 (322)
T TIGR03815 239 RAVAAAARVCPELGRRNP-DLRLVVRGPA--P-A-------GLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-AS 306 (322)
T ss_pred HHHHHHHHHHHHHhhhCC-CeEEEEeCCC--C-C-------CCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CC
Confidence 999999999998887654 3567777532 1 1 124678999999999999999999999999999988 67
Q ss_pred CCCHHHHHHHHHHH
Q 015892 268 PCGEVANTFQDLGV 281 (398)
Q Consensus 268 ~~s~~~~~~~~la~ 281 (398)
+++++++++..+.+
T Consensus 307 ~~~~~~~~~~~~l~ 320 (322)
T TIGR03815 307 RRRPLGRAAAEVLD 320 (322)
T ss_pred CCCHHHHHHHHHHh
Confidence 78888877776643
No 32
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.97 E-value=2.4e-29 Score=217.80 Aligned_cols=167 Identities=57% Similarity=0.980 Sum_probs=132.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
+|+|+|+||||||||+|+|||..||++|+||++||+|+|++++..+..
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~-------------------------------- 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR-------------------------------- 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh--------------------------------
Confidence 589999999999999999999999999999999999999976543310
Q ss_pred CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCC
Q 015892 126 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 205 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~ 205 (398)
.......++.++..+.+..||||||||||++++.......+.++|.+++|++|+..++.++.++++.+++.+.
T Consensus 49 -------~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 49 -------GPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred -------CcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 0011234555555443479999999999999876654432357899999999999999999999999999999
Q ss_pred CeeEEEEcccccc--CCCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015892 206 PCIAVVENMCHFD--ADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 206 ~~~~vV~N~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
+..++|+||+... ...+....+.....+++.+.++.+.++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 9999999998642 112222223456789999999999999999874
No 33
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.96 E-value=6.5e-29 Score=223.01 Aligned_cols=194 Identities=21% Similarity=0.181 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--cccc--------cCCCCCceeeeccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEYL 114 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~~--------~~~~~~~i~~~~~~ 114 (398)
++|+|+| ||||||||+|+|||.+||++|+|||+||+|||++++..+++... ++.+ .....+.+.....+
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCC
Confidence 5799995 99999999999999999999999999999999988877655332 1111 11122233445678
Q ss_pred CeEEEecccCCCcccccCCc--cHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhc--CCCeEEEEeCCChhhH
Q 015892 115 GVKLVSFGFSGQGRAIMRGP--MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLAF 190 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~--a~d~viiv~~p~~~s~ 190 (398)
|++++|++............ .....++ .+..+ +++||||||||++.+..... ...+. ++|.+++|++|+..++
T Consensus 80 ~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl 156 (212)
T cd02117 80 GVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMAL 156 (212)
T ss_pred CcEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHH
Confidence 99999987654433222111 1122333 44444 37899999999765531111 01133 7899999999999999
Q ss_pred HHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCC
Q 015892 191 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 250 (398)
Q Consensus 191 ~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~ 250 (398)
.++.++++.++.+ +.+..++|+||+..+ .+.+..+++++.++.+++..||++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 157 YAANNICKGIRKYAKSGGVRLGGLICNSRNTD--------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 9999988888765 456789999996543 122467899999999999999985
No 34
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.96 E-value=5.1e-29 Score=217.68 Aligned_cols=179 Identities=30% Similarity=0.480 Sum_probs=144.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
+|+|.|+||||||||+|+|||..|+++|+||++||+|+|++++..+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999977776655432110 00 0
Q ss_pred CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCC
Q 015892 126 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 205 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~ 205 (398)
+...+ .. |||||||||+.+.....+ +..+|.+++|+.|+..++.++.++++.++..+.
T Consensus 57 --------------~~~~~----~~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL----AG--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc----cC--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00111 01 999999999998776655 568899999999999999999999999988888
Q ss_pred CeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHHH
Q 015892 206 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTF 276 (398)
Q Consensus 206 ~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~ 276 (398)
+..++|+|++...... ..+..+++++.++.+++..||++..+.++...|+++.++.|+++++++|
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 8899999997544321 1233577888889888889999999999999999999999999887654
No 35
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=99.96 E-value=3e-29 Score=192.13 Aligned_cols=88 Identities=33% Similarity=0.589 Sum_probs=75.8
Q ss_pred ceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCCCc
Q 015892 296 TAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFS 375 (398)
Q Consensus 296 ~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dgh~ 375 (398)
+.+++++..+.+.|+|+||.+ +.|++.|||||||||.|+++.++||.++...+|.+|+|.+++.+|+|+|+|+|+|||.
T Consensus 1 ~~i~l~~~~~~l~i~w~DG~~-~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~ 79 (89)
T PF06155_consen 1 TEIKLDKDERHLEIEWSDGQE-SRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHD 79 (89)
T ss_dssp -EEEEECCTTEEEEEETTSEE-EEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB-
T ss_pred CeEEEecCCCEEEEEECCCCE-EEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCc
Confidence 356788889999999999998 9999999999999999999999999778999999999999999999999999999995
Q ss_pred -ccCChHHHH
Q 015892 376 -QIAPYDQLQ 384 (398)
Q Consensus 376 -s~y~~~~L~ 384 (398)
|+|+|+|||
T Consensus 80 sgiY~~~~Lr 89 (89)
T PF06155_consen 80 SGIYPWEWLR 89 (89)
T ss_dssp --EEEHHHHH
T ss_pred eeEecHHHhC
Confidence 599999997
No 36
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.95 E-value=2e-27 Score=222.81 Aligned_cols=230 Identities=20% Similarity=0.203 Sum_probs=146.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc--ccccccC----------CCCCceeeec
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLEMN----------PEKRTIIPTE 112 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~--~~~~~~~----------~~~~~i~~~~ 112 (398)
++|+|+ +||||||||+|+|||..||++|+|||+||+|||++++..+++.. .++.+.. ...+.+.+..
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 89999999999999999999999999999999999998886522 1222110 0111122222
Q ss_pred cCCeEEEecccCCCcccccCCc--cHHHHHHHHHhhcc--CCCCcEEEEcCCCCC---ChhhhhhhhhcCCCeEEEEeCC
Q 015892 113 YLGVKLVSFGFSGQGRAIMRGP--MVSGVINQLLTTTE--WGELDYLVIDMPPGT---GDIQLTLCQVVPLTAAVIVTTP 185 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~~~~~--~~~~~l~~ll~~~~--~~~yD~VIID~pp~~---~~~~~~~~~~~a~d~viiv~~p 185 (398)
..+.+...............+. ........+++.+. ..+||||||||++.+ +.... ....++|.+++|+.|
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~~~--~a~~~Ad~viVvt~~ 157 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFATP--LARSLAEEVIVIGSN 157 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCccccccccc--hhhhhCCeEEEEecc
Confidence 2221110000000000000000 00001122222221 258999999997644 11111 113478999999999
Q ss_pred ChhhHHHHHHHHH---HHhccC--CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCC
Q 015892 186 QKLAFIDVAKGVR---MFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSG 260 (398)
Q Consensus 186 ~~~s~~~~~~~~~---~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g 260 (398)
+..++.++..+.+ .+++.+ .++.++|+||+... ...++++++++.++++.||+++.+.++. .+
T Consensus 158 e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~-----------~~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~ 225 (296)
T TIGR02016 158 DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGS-----------GEAQAFAREVGIPVLAAIPADEELRRKS-LA 225 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCc-----------cHHHHHHHHcCCCeEEECCCCHHHHHHh-cC
Confidence 9999987766655 455553 66899999996321 2467889999999999999999999844 33
Q ss_pred CceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 015892 261 MPEVAADPCGEVANTFQDLGVCVVQQCAK 289 (398)
Q Consensus 261 ~~v~~~~~~s~~~~~~~~la~~i~~~i~~ 289 (398)
.+.....+.+..++.|.++++.|.+++..
T Consensus 226 ~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 226 YQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 44433444556899999999999887653
No 37
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.95 E-value=5.4e-27 Score=215.87 Aligned_cols=205 Identities=41% Similarity=0.613 Sum_probs=163.7
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--cc---ccCCCCCceeeeccCC
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIPTEYLG 115 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~~---~~~~~~~~i~~~~~~~ 115 (398)
.+..++|+|.|+|||+||||+|+|||..||+.|+||++||+|..+++.+.+++.+.. +. ..+.....+.+....+
T Consensus 54 ~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 133 (265)
T COG0489 54 KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKV 133 (265)
T ss_pred cccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccce
Confidence 356899999999999999999999999999999999999999999999999988642 12 1222222222223467
Q ss_pred eEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 116 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
+++++.+. ....+++......+.+++..+.|+.||||||||||+.++......+. ..|.+++|++|+......+++
T Consensus 134 lsi~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~-~~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 134 LSILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQR-IPDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EEEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhc-cCCeEEEEeCCccchHHHHHH
Confidence 77777655 44556677778889999999887889999999999999877666543 346999999999999999999
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhh
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA 255 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~ 255 (398)
.++++++.+.+++|+|.||..+.+...- ....+.+.++++ ++++.+|.+....+
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhh
Confidence 9999999999999999999877663210 245677888888 78888998876554
No 38
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.95 E-value=2.8e-26 Score=203.39 Aligned_cols=218 Identities=25% Similarity=0.329 Sum_probs=159.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccc---------cccCCC----------
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL---------LEMNPE---------- 104 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~---------~~~~~~---------- 104 (398)
|+.|+|.|+|||+||||+|+|||..|+.. +|++|+|+|...++++.+|+.+... ...+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 56899999999999999999999999875 8999999999999999998876320 000000
Q ss_pred ---CCceee----------eccCCe-------------------------------EEEecccCCCcccccCCccHHHHH
Q 015892 105 ---KRTIIP----------TEYLGV-------------------------------KLVSFGFSGQGRAIMRGPMVSGVI 140 (398)
Q Consensus 105 ---~~~i~~----------~~~~~l-------------------------------~vlp~~~~~~~~~~~~~~~~~~~l 140 (398)
.+.+.. ...+|. .++.+.+. ...+....++
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~------vGe~~s~~lV 153 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLN------VGEEESGKLV 153 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeecc------CCccccchHH
Confidence 111110 000110 11111000 1111223344
Q ss_pred HHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCC
Q 015892 141 NQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 220 (398)
Q Consensus 141 ~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~ 220 (398)
..+..... +.-|++|||+|||.+-....+ +..+|.+++|++|++++++++++.++.++.++++ .++|+||. +..
T Consensus 154 ~~~kk~a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~--~~g 227 (284)
T COG1149 154 TALKKHAK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRY--NLG 227 (284)
T ss_pred HHHHHhhh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecC--CCC
Confidence 44444432 336999999999999888776 6689999999999999999999999999999998 57888995 221
Q ss_pred CceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCCCCHHHHHHHHHHHHHH
Q 015892 221 GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVV 284 (398)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~ 284 (398)
....+++.+..|+++++.||++..+.++...|.|+.+ ++++.+..+...+..+.
T Consensus 228 --------~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 228 --------DSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLK 281 (284)
T ss_pred --------chHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHH
Confidence 1258899999999999999999999999999999988 77777777766655443
No 39
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.95 E-value=1.1e-25 Score=211.90 Aligned_cols=225 Identities=23% Similarity=0.320 Sum_probs=159.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--ccccc---CC-C-----CCceee
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM---NP-E-----KRTIIP 110 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~~~---~~-~-----~~~i~~ 110 (398)
+..++|+|+ +|||+||||+++|||.+||++|+||++||+|++++++..+++... .+.+. .. . .+.+..
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 457999998 599999999999999999999999999999999999988887542 21111 00 0 011122
Q ss_pred eccCCeEEEecccCCCcccccCCccHHHHHH--HHHhh---ccCCCCcEEEEcCCCCCC--hhhhhhhhhcCCCeEEEEe
Q 015892 111 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVT 183 (398)
Q Consensus 111 ~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~VIID~pp~~~--~~~~~~~~~~a~d~viiv~ 183 (398)
. ..|++++..+. ...+.+......+. ++++. ..| .||||||||+++.. ...+... ...++.+++|+
T Consensus 108 ~-~~gv~~~~~g~----p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVVt 180 (329)
T cd02033 108 K-RDGVFAMELGG----PEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVVG 180 (329)
T ss_pred E-eCCEEEecCCC----CeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEeC
Confidence 2 35777765321 22333332222121 23333 344 79999999977553 1111111 22468999999
Q ss_pred CCChhhHHH---HHHHHHHHhccC--CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhccc
Q 015892 184 TPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGD 258 (398)
Q Consensus 184 ~p~~~s~~~---~~~~~~~l~~~~--~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~ 258 (398)
+|+..++.+ +.+.++++++++ .+.+++|+||... ....+++++.++.++++.||+++.+.++..
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a~~ 249 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRKSA 249 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 999999976 455667777774 5789999999531 134788999999999999999999999999
Q ss_pred CCCceEeeCCCCHHHHHHHHHHHHHHHHH
Q 015892 259 SGMPEVAADPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 259 ~g~~v~~~~~~s~~~~~~~~la~~i~~~i 287 (398)
.|+++ ..|.++++++|+++|+.|.+..
T Consensus 250 ~g~~~--~~p~s~~a~~f~~LA~~I~~~~ 276 (329)
T cd02033 250 AYQIV--GRPGTTWGPLFEQLATNVAEAP 276 (329)
T ss_pred cCCee--cCCCCHHHHHHHHHHHHHHHhc
Confidence 99953 5678899999999999987743
No 40
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.94 E-value=1.8e-26 Score=208.46 Aligned_cols=190 Identities=19% Similarity=0.247 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
|++|+|.|.||||||||+|+|||..|+++|+||++||+|||++.+.++-.... . ..++......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~---------~----~~~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALR---------S----NTWDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhcc---------c----cCCCccceec---
Confidence 58999999999999999999999999999999999999999876554311100 0 0000000000
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 203 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~ 203 (398)
.. .....++..++....+.||||||||||+.+.....+ +.++|.+++|+.|+..++.++.++++.+.+.
T Consensus 65 --------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~ 133 (231)
T PRK13849 65 --------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIEL 133 (231)
T ss_pred --------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 00 011234555444433689999999999999877766 5688999999999999998888887665432
Q ss_pred ------CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE-EecCCChhhhhcccCCCceEeeCC
Q 015892 204 ------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADP 268 (398)
Q Consensus 204 ------~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ip~~~~i~~a~~~g~~v~~~~~ 268 (398)
+++ ..+|+|++..+... ...+..+++.+.+ +++ ..|+.+..+.++...|.+.....+
T Consensus 134 ~~~~~~~l~-~~iv~~~~~~~~~~-----~~~~~~~~~~~~~--~vl~t~I~~r~~~~~a~~~G~~~~~~~~ 197 (231)
T PRK13849 134 LLSENLAIP-TAILRQRVPVGRLT-----TSQRAMSDMLESL--PVVDSPMHERDAFAAMKERGMLHLTLLN 197 (231)
T ss_pred HHHhCCCCC-eEEEEEecccccCC-----HHHHHHHHHHhcC--CCCCccccchHHHHHHHhcCCcccchhh
Confidence 333 45899997433211 1112334444433 334 448888999999999997765444
No 41
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.93 E-value=9.1e-25 Score=189.73 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=161.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCcccCCcccc---------c----------------
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRL---------L---------------- 99 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q~~~~~~~l~~~~~~---------~---------------- 99 (398)
+|+|+ +||||||||+|+-||..|..+ |++||+||+|| ..+++..||.+... .
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 57776 999999999999977777766 59999999999 55677667765420 0
Q ss_pred ccCCCCCcee---eeccCCeEEEecccCC---CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhh
Q 015892 100 EMNPEKRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 173 (398)
Q Consensus 100 ~~~~~~~~i~---~~~~~~l~vlp~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~ 173 (398)
..+.....+. ....++++++..+... ..+... ...+++.+++.+....||+||+||-.|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp----~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP----MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch----HHHHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 0000011111 1223457777655332 233332 23456666666555779999999999999777666 4
Q ss_pred cCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 015892 174 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 253 (398)
Q Consensus 174 ~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i 253 (398)
..+|.+++|++|+..|+..+++..++..+++++.+++|+|++.... ..+.......+.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e----------~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEE----------ELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccchh----------HHHHhhhhccCCeEEEEccCCHHH
Confidence 5789999999999999999999999999999999999999975431 356677788898899999999999
Q ss_pred hhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 015892 254 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 285 (398)
Q Consensus 254 ~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~ 285 (398)
.++-..|.|+.... .+.+++.++++.+.+
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~ 252 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIK 252 (255)
T ss_pred HhccccCCccccch---hhhHHHHHHHHHHHh
Confidence 99999999998753 566777777766654
No 42
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.93 E-value=4.4e-25 Score=197.04 Aligned_cols=170 Identities=21% Similarity=0.261 Sum_probs=125.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc---cccc---c-CCCCCceeeeccCCe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---RLLE---M-NPEKRTIIPTEYLGV 116 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~---~~~~---~-~~~~~~i~~~~~~~l 116 (398)
+|+|+|+|.|||+||||+|.|||..||++|+||++||+|+|.+.+..+++... .+.+ . ....+.+.....+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 89999999999999999999999999999999999999999988776665433 1111 1 111223333344799
Q ss_pred EEEecccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 117 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 117 ~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
+++|++...... ..+.. ..++.+++.+ +..||||||||||.... .........+|.+++|+.|+..+...+.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~----~~l~~~l~~l-~~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQS----SNFKTLIETL-RKYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHH-HhcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHH
Confidence 999976543322 22222 2355555555 38999999999994321 11111123579999999999999999999
Q ss_pred HHHHHhccCCCeeEEEEccccccC
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
.++.+++.+.+++|+|+|++....
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccccc
Confidence 999999999999999999976443
No 43
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=4.7e-25 Score=192.75 Aligned_cols=178 Identities=26% Similarity=0.329 Sum_probs=123.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
.|+|+|+|||+||||+|+|||..| +||++||+|++.++++.+++.+......... .......+...+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 489999999999999999999999 7999999999999999998876432110000 000000111111111100
Q ss_pred CcccccCCccHHHHHHHHH-hhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC
Q 015892 126 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 204 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~ 204 (398)
.. ....+.+.+ ....++.||||||||||+.+.....+ +..+|.+++|+.|+..++.++.++++.+++.+
T Consensus 74 -------~~-~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GK-LVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HH-HHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 11 111222222 11124799999999999998876655 45789999999999999999999999999888
Q ss_pred CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecC
Q 015892 205 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 248 (398)
Q Consensus 205 ~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip 248 (398)
.+ +++|+|++...... .....++.+.+|.++++.||
T Consensus 144 ~~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 144 IP-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CC-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 76 58999997543321 12456677888999999887
No 44
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.93 E-value=4.3e-25 Score=197.33 Aligned_cols=166 Identities=23% Similarity=0.257 Sum_probs=123.1
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCcccCCccc--ccc---cC--CCCCceeee
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE---MN--PEKRTIIPT 111 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q~~~~~~~l~~~~~--~~~---~~--~~~~~i~~~ 111 (398)
..+++++|+|+|.|||+||||+|+|||.+||+ .|+|||+||+|++++.++.+++.+.. +.+ .. ...+.+...
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~ 110 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPT 110 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccC
Confidence 34578999999999999999999999999997 69999999999999888777765532 111 11 122223333
Q ss_pred ccCCeEEEecccCCCcccc-cCCccHHHHHHHHHhhccCCCC--cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh
Q 015892 112 EYLGVKLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 188 (398)
Q Consensus 112 ~~~~l~vlp~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~y--D~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~ 188 (398)
..++++++|++........ ... ..+++++..+. ..| |||||||||+.+......+ ...+|.+++|++|+..
T Consensus 111 ~~~~l~vl~~g~~~~~~~~~~~~----~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~~ 184 (207)
T TIGR03018 111 NIGRLSLLPAGRRHPNPTELLAS----QRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGRT 184 (207)
T ss_pred CCCCEEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCCC
Confidence 4579999998765433211 222 34555555553 667 9999999999974332221 3367999999999999
Q ss_pred hHHHHHHHHHHHhccCCCeeEEEEc
Q 015892 189 AFIDVAKGVRMFSKLKVPCIAVVEN 213 (398)
Q Consensus 189 s~~~~~~~~~~l~~~~~~~~~vV~N 213 (398)
+..++.+.++.++ +.+.+|+|+|
T Consensus 185 ~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 185 TQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CHHHHHHHHHHhc--CCCeEEEEeC
Confidence 9999999999998 6788999988
No 45
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.91 E-value=5.4e-25 Score=194.85 Aligned_cols=190 Identities=25% Similarity=0.338 Sum_probs=124.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 126 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~ 126 (398)
|+|+|.||||||||+|++||..|+++|+||++||+|+|++.+..+++............... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 69 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI-----------LKNFESQ 69 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH-----------HESCCHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhh-----------hhccchh
Confidence 78999999999999999999999999999999999999988877765511100000000000 0000000
Q ss_pred cccccCC-ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC-
Q 015892 127 GRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK- 204 (398)
Q Consensus 127 ~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~- 204 (398)
.... .. ......++++++.+.+..||||||||||+++.....+ +.++|.+++|+.|+..++.++.++++.++..+
T Consensus 70 ~~~~-~~~~~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~ 146 (195)
T PF01656_consen 70 DIYQ-GEEYLDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGK 146 (195)
T ss_dssp HHHH-HCHCHHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhh-hhhhhHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhcc
Confidence 0000 00 0233456666665433459999999999999886655 56889999999999999999999999999887
Q ss_pred -CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCC-eE-EecCCChhhhh
Q 015892 205 -VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HL-FDLPIRPTLSA 255 (398)
Q Consensus 205 -~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~ip~~~~i~~ 255 (398)
.+..++|+|++....... .....+.....++.+ ++ +.||++..+.|
T Consensus 147 ~~~~~~vv~N~v~~~~~~~-----~~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 147 KLKIIGVVINRVDPGNESK-----LQEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp TEEEEEEEEEEETSCCHHH-----HHHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred ccceEEEEEeeeCCCccch-----HHHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 457899999974432110 011233334444433 22 67999887764
No 46
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.91 E-value=9.3e-24 Score=197.14 Aligned_cols=167 Identities=19% Similarity=0.277 Sum_probs=125.8
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc-----ccccCCCCCceee-eccC
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-----LLEMNPEKRTIIP-TEYL 114 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~-----~~~~~~~~~~i~~-~~~~ 114 (398)
.+..++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+.++.+++.+.. ........+.+.. ...+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 355799999999999999999999999999999999999999999887777665432 1112222223322 2357
Q ss_pred CeEEEecccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCChhhHHH
Q 015892 115 GVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFID 192 (398)
Q Consensus 115 ~l~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~~s~~~ 192 (398)
|++++|++...... ..+..+ .+..+++.+ ++.||||||||||..... .... ...+|.+++|+.++..+..+
T Consensus 180 ~l~~lp~g~~~~~~~~~~~~~----~~~~~l~~l-~~~yD~ViiD~pp~~~~~d~~~~--~~~~d~vilV~~~~~t~~~~ 252 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELLARP----AFTDLLNKV-MGDYDVVIVDTPSAEHSSDAQIV--ATRARGTLIVSRVNETRLHE 252 (274)
T ss_pred CEEEEeCcCCCCCHHHHhCcH----HHHHHHHHH-HhcCCEEEEeCCCcccccHHHHH--HHhCCeEEEEEECCCCCHHH
Confidence 99999988654322 223322 345555555 489999999999976422 2222 33679999999999999999
Q ss_pred HHHHHHHHhccCCCeeEEEEcc
Q 015892 193 VAKGVRMFSKLKVPCIAVVENM 214 (398)
Q Consensus 193 ~~~~~~~l~~~~~~~~~vV~N~ 214 (398)
+.+.++.++..+.+.+|+|+|+
T Consensus 253 ~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 253 LTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHhCCCCEEEEEeCC
Confidence 9999999999999999999995
No 47
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.8e-22 Score=174.31 Aligned_cols=233 Identities=20% Similarity=0.202 Sum_probs=170.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc--ccccc--------cCCCCCceeeecc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLE--------MNPEKRTIIPTEY 113 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~--~~~~~--------~~~~~~~i~~~~~ 113 (398)
|+.|+|+ +|||.||||++.|+|.+||+.|+||++|-+||...++..+++.. +++.+ .....+.++.+.+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 5789999 99999999999999999999999999999999999988888732 22111 2344567778888
Q ss_pred CCeEEEecccCCCcccccCCcc--HHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhh-hhhhcCCCeEEEEeCCChhhH
Q 015892 114 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 190 (398)
Q Consensus 114 ~~l~vlp~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~-~~~~~a~d~viiv~~p~~~s~ 190 (398)
.|+..+-++-..........-. ..+.|+++-.. .+..|+||.|..+..--.-.+ -..-..+|.+.+|+.-+..++
T Consensus 80 ~Gv~CVEsGGPepGvGCAGRGVitai~~Le~lgaf--~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGCAGRGVITAINLLEELGAF--EEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCcccchHHHHHHHHHHhCCc--cccCCEEEEeccCceeecceeeehhcccCcEEEEEecCchHHH
Confidence 8999998665443333222111 12233333221 134699999985422100010 001225799999999999999
Q ss_pred HHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEee
Q 015892 191 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 266 (398)
Q Consensus 191 ~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~ 266 (398)
..+....+-++++ +.+.-|+|.|.-..+ ...+.++.+++++|.+++..+|.+..+.+|...++++.++
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~--------~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVD--------RERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCcc--------cHHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 9887776655543 467889999973221 2236789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 015892 267 DPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 267 ~~~s~~~~~~~~la~~i~~~i 287 (398)
+|+|..++.|++||+.|.+.-
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~ 250 (278)
T COG1348 230 APDSNQAEEYRELAKKILENE 250 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCC
Confidence 999999999999998887543
No 48
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.89 E-value=3.6e-22 Score=178.06 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=154.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcc--cccc--------cCCCCCceeeeccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEYL 114 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~--~~~~--------~~~~~~~i~~~~~~ 114 (398)
|.|+|+ +|||.||||++.||+.+||++|+||+.|.+||...++..+++... ++++ .+...+.++...+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 578999 999999999999999999999999999999999988877765432 2221 11223345566678
Q ss_pred CeEEEecccCCCcccccCCccHHHHHHHHHhhc--cCCCCcEEEEcCCCC-----CChhhhhhhhhcCCCeEEEEeCCCh
Q 015892 115 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTT--EWGELDYLVIDMPPG-----TGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 115 ~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~yD~VIID~pp~-----~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
|+..+-++.......... ......++ +++.. -..+||||+.|.-.. +..... -..++.+++|+.-+.
T Consensus 80 gi~CvEsGGPePGvGCaG-RGI~~a~~-~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir----~g~a~evyIVtSge~ 153 (273)
T PF00142_consen 80 GILCVESGGPEPGVGCAG-RGIITALE-LLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR----EGYAQEVYIVTSGEF 153 (273)
T ss_dssp GEEEEE---SCTTSSBHH-HHHHHHHH-HHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH----TTS-SEEEEEEBSSH
T ss_pred CceeeccCCCcccccccc-cchhhhhh-hHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh----hccCCEEEEEecCcH
Confidence 888887654332221111 11111122 22211 125699999996432 222221 235699999999999
Q ss_pred hhHHHHHHHHHHHhcc----CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCCCce
Q 015892 188 LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 263 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v 263 (398)
.|+..+..+.+-++++ +.+..|+|.|.-... ...+..++++++.|.++++.||++..++++...++++
T Consensus 154 mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--------~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TV 225 (273)
T PF00142_consen 154 MSLYAANNICKAIKNFADRGGARLGGIICNSRNVD--------DEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTV 225 (273)
T ss_dssp HHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSST--------THHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-C
T ss_pred HHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCC--------CchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEE
Confidence 9999888887777665 346789999952211 1225789999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHH
Q 015892 264 VAADPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 264 ~~~~~~s~~~~~~~~la~~i~~~i 287 (398)
++..|.|+.++.|++||+.|.+.-
T Consensus 226 ie~~P~s~~a~~yr~LA~~I~~~~ 249 (273)
T PF00142_consen 226 IEAAPDSEQAQEYRELARKILENP 249 (273)
T ss_dssp CCC-TTSHHHHHHHHHHHHHHH--
T ss_pred EEeCCCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988664
No 49
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.89 E-value=2.7e-22 Score=186.97 Aligned_cols=233 Identities=22% Similarity=0.284 Sum_probs=185.8
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCCCCCCCcccCCccc--cccc--------CCCCCc
Q 015892 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLEM--------NPEKRT 107 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q~~~~~~~l~~~~~--~~~~--------~~~~~~ 107 (398)
...+.+++++|.+.|||||-||+|.|+|+.++. .+..|+++|+|.|+++...+++.+.. +.+. ....+.
T Consensus 99 s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~ 178 (366)
T COG4963 99 SIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDS 178 (366)
T ss_pred hhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHH
Confidence 445568999999999999999999999999995 58999999999999887777766542 1111 111223
Q ss_pred eeeeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh
Q 015892 108 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 108 i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~ 187 (398)
......++++++|..........+.......++..+ +..||+||+|.|-.+.+++... +..+|.++++++|+.
T Consensus 179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~~~~~Ll~~~-----~~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl 251 (366)
T COG4963 179 LLTRLASGLKLLAAPTELAKNYDLKTGAVERLLDLL-----RGSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSL 251 (366)
T ss_pred HHhccCCCceeecCCcchhhhcccccchHHHHHHHh-----hccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccH
Confidence 334456899999977655544444444444433333 4899999999998888888877 668899999999999
Q ss_pred hhHHHHHHHHHHHhccCC--CeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCCh-hhhhcccCCCceE
Q 015892 188 LAFIDVAKGVRMFSKLKV--PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEV 264 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~-~i~~a~~~g~~v~ 264 (398)
.|++..+++++.+++++. +...+|+|++..+... ..+++.+.++++.+..+|+|+ .+..|.+.|+++.
T Consensus 252 ~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~ 322 (366)
T COG4963 252 ASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---------EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLS 322 (366)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---------CHHHHHHHhCCchhccccCCchhhhhhhccCcccc
Confidence 999999999999998754 4678899996544422 278999999999999999999 5668999999999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHHH
Q 015892 265 AADPCGEVANTFQDLGVCVVQQC 287 (398)
Q Consensus 265 ~~~~~s~~~~~~~~la~~i~~~i 287 (398)
+.+|++++++++.+++..+..++
T Consensus 323 E~~~~~~~~k~l~~la~~l~~~~ 345 (366)
T COG4963 323 EVDPGSPAAKALAQLAQSLGGRI 345 (366)
T ss_pred ccCCCChHHHHHHHHHHHhcCcc
Confidence 99999999999999999887653
No 50
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.88 E-value=5.1e-22 Score=157.80 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
+|++.|+|||+||||++.|||..+++. |++|+++|+|+|.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999753
Q ss_pred CCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccC
Q 015892 125 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 204 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~ 204 (398)
|||||||||+++..+..+ +.++|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999999877665 56789999999999999999999999998876
Q ss_pred CC---eeEEEEcc
Q 015892 205 VP---CIAVVENM 214 (398)
Q Consensus 205 ~~---~~~vV~N~ 214 (398)
.+ ...+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 53 68888886
No 51
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.87 E-value=8.7e-22 Score=208.19 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=129.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---c-ccCCCCCceeeeccCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---L-EMNPEKRTIIPTEYLG 115 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~-~~~~~~~~i~~~~~~~ 115 (398)
+.+++|+|+|.|||+||||+|+|||..||+.|+|||+||+|++.++++.+++.... + . ......+.+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 45699999999999999999999999999999999999999998887777765432 1 1 1112223344455689
Q ss_pred eEEEecccCCCc-ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 116 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 116 l~vlp~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
++++|++..... ...+..+ .+..+++.+ ++.||||||||||..+......+ ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~----~~~~~l~~l-~~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASP----AMFSLVIHA-RLYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccH----HHHHHHHHH-HhhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 999998854322 2222333 344445444 48999999999999875443332 2357999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEccccccC
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
+.++.++..+.+..|+|+|++....
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhh
Confidence 9999999989899999999965433
No 52
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.87 E-value=2.1e-21 Score=162.26 Aligned_cols=109 Identities=36% Similarity=0.521 Sum_probs=95.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
+|+|+|+|||+||||++.++|..++.+|.+|+++|+|+|+++..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999876432
Q ss_pred CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc-C
Q 015892 126 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 204 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~-~ 204 (398)
||||||||||+++.....+ +..+|.+++|++|+..++.++.++++.+... +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 9999999999999887766 5577999999999999999999998888653 4
Q ss_pred CCeeEEEEcccccc
Q 015892 205 VPCIAVVENMCHFD 218 (398)
Q Consensus 205 ~~~~~vV~N~~~~~ 218 (398)
...+++|+|++...
T Consensus 97 ~~~~~lVvN~~~~~ 110 (139)
T cd02038 97 VLNFRVVVNRAESP 110 (139)
T ss_pred CCCEEEEEeCCCCH
Confidence 45688999997543
No 53
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.85 E-value=2.7e-20 Score=164.11 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=122.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
|++|+|+|.|||+||||.+..||..|+++|.+|.+||+||+.+...|.-..... . .-.+++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~----~--------~~~~~~~V~~~-- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRP----G--------AWPDRIEVYEA-- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcccc----C--------CCCCCeeEEec--
Confidence 689999999999999999999999999999999999999999877663111100 0 00112222211
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhcc
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 203 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~ 203 (398)
.-...++..++......|||||||+.++-+.....+ +..+|.+++|+.++......+.++++.+.+.
T Consensus 67 -----------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~ 133 (231)
T PF07015_consen 67 -----------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRRL 133 (231)
T ss_pred -----------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 011235555554433569999999999888766555 5678999999999999999998888877654
Q ss_pred ------CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE-ecCCChhhhhcccCCCc
Q 015892 204 ------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF-DLPIRPTLSASGDSGMP 262 (398)
Q Consensus 204 ------~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~ip~~~~i~~a~~~g~~ 262 (398)
.++ ..|+++|+....... ......++.+ +.|++- .+..+..++.-...|..
T Consensus 134 ~~~~~~~ip-~~Vl~Tr~~~~~~~~-----~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~l 191 (231)
T PF07015_consen 134 EKAERRDIP-AAVLFTRVPAARLTR-----AQRIISEQLE--SLPVLDTELHERDAFRAMFSRGLL 191 (231)
T ss_pred HHhhCCCCC-eeEEEecCCcchhhH-----HHHHHHHHHh--cCCccccccccHHHHHHHHHhcch
Confidence 234 468889875332110 1112233333 344442 25555567766666643
No 54
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.84 E-value=2.7e-20 Score=194.97 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=127.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc-----ccccC-CCCCceeeeccCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-----LLEMN-PEKRTIIPTEYLG 115 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~-----~~~~~-~~~~~i~~~~~~~ 115 (398)
+..|+|+|+|.+||+||||+|+|||..||..|+|||+||+|++.+.++.+++.... +.... ...+.+.....+|
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 45799999999999999999999999999999999999999998887776665432 11111 2233444555579
Q ss_pred eEEEecccCCCc-ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 116 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 116 l~vlp~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
+++||++..... .+.+.. ..+..+++.+ +..||||||||||.+...-...+ ...+|.+++|+.++..+...+.
T Consensus 609 l~vl~~g~~~~~p~ell~~----~~~~~ll~~l-~~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~ 682 (726)
T PRK09841 609 FDVITRGQVPPNPSELLMR----DRMRQLLEWA-NDHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVS 682 (726)
T ss_pred EEEEeCCCCCCCHHHHhCc----HHHHHHHHHH-HhcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHH
Confidence 999998754322 222222 2455566555 38999999999997764211111 2356999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEcccc
Q 015892 195 KGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
..++.+...+.++.|+|+|++.
T Consensus 683 ~~~~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 683 LSMQRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred HHHHHHHhCCCceEEEEEeCcc
Confidence 9999999999999999999975
No 55
>PRK11519 tyrosine kinase; Provisional
Probab=99.84 E-value=2.5e-20 Score=195.04 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=129.3
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--c---ccc-CCCCCceeeeccCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEM-NPEKRTIIPTEYLG 115 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~---~~~-~~~~~~i~~~~~~~ 115 (398)
...++|+|+|.+||+||||+|.|||..||+.|+|||+||+|++.+.++.+++.... + ... ....+.+.....+|
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~ 603 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIAN 603 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCC
Confidence 45699999999999999999999999999999999999999999988877765432 1 111 12234445555689
Q ss_pred eEEEecccCCCcc-cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 116 VKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 116 l~vlp~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
+++||++...... +.+ ....+..+++.+. ..||||||||||.+...- .......+|.+++|+.++......+.
T Consensus 604 l~~lp~g~~~~~~~ell----~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~D-a~~l~~~~d~~l~Vvr~~~t~~~~~~ 677 (719)
T PRK11519 604 FDLIPRGQVPPNPSELL----MSERFAELVNWAS-KNYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNTLKEVE 677 (719)
T ss_pred EEEEeCCCCCCCHHHHh----hHHHHHHHHHHHH-hcCCEEEEeCCCcccchH-HHHHHHHCCeEEEEEeCCCCCHHHHH
Confidence 9999987543322 222 2345666666664 899999999999765221 11113356999999999999999999
Q ss_pred HHHHHHhccCCCeeEEEEcccc
Q 015892 195 KGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
..++.+...+.+.+|+|+|++.
T Consensus 678 ~~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 678 TSLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHHHHhCCCCeEEEEEeCCc
Confidence 9999999999999999999974
No 56
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.84 E-value=4.3e-20 Score=146.53 Aligned_cols=99 Identities=33% Similarity=0.525 Sum_probs=86.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
+|+|.|.|||+||||+|.+||..++++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999998
Q ss_pred CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHH---HHhc
Q 015892 126 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 202 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~---~l~~ 202 (398)
||+||||+||+.+.....+ +.++|.+++|+.|+..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999877655 56789999999999999999999987 3333
Q ss_pred c--CCCeeEEEEc
Q 015892 203 L--KVPCIAVVEN 213 (398)
Q Consensus 203 ~--~~~~~~vV~N 213 (398)
. .....++|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 2 3456778776
No 57
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.83 E-value=6.8e-21 Score=175.21 Aligned_cols=203 Identities=17% Similarity=0.178 Sum_probs=119.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc----ccccCCCC-------Ccee-eeccC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLEMNPEK-------RTII-PTEYL 114 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~----~~~~~~~~-------~~i~-~~~~~ 114 (398)
|.++++|||+||||+|+|+|..+|++|+|||+||+|++. +++.+|+.+-. ........ .... .....
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 456779999999999999999999999999999999984 66666655410 00000000 0000 00000
Q ss_pred CeEEEecccCCCc-----ccccCCccHHH--HHHHHHhhccCCCCcEEEEcCCCCCChhh-hh----------hhhhcCC
Q 015892 115 GVKLVSFGFSGQG-----RAIMRGPMVSG--VINQLLTTTEWGELDYLVIDMPPGTGDIQ-LT----------LCQVVPL 176 (398)
Q Consensus 115 ~l~vlp~~~~~~~-----~~~~~~~~~~~--~l~~ll~~~~~~~yD~VIID~pp~~~~~~-~~----------~~~~~a~ 176 (398)
.++.++....... ......+.... .+..+.+.+.+..||+|||||||.-.... +. .+.-...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~ 160 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPER 160 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 1111111100000 00011122222 23334444444689999999999422110 10 1111123
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCC-ce----ecccCCChHHHHHHHhCCCeEEecCCC
Q 015892 177 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG-KR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 250 (398)
Q Consensus 177 d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~-~~----~~~~~~~~~~~~~~~~g~~~~~~ip~~ 250 (398)
+.+++|+.|+..++..+.++++.+...++++.++|+|++...... .. ....++..++++.+.|+...+..+|+.
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 578999999999999999999999999999999999998654431 10 012233456777777765556667753
No 58
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.82 E-value=5.8e-21 Score=168.66 Aligned_cols=210 Identities=26% Similarity=0.301 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
.+|+|.|+||||||||+|+|||.+|+++|+||.++|+|..++++..+++.......... .....+ ....++.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~g-i~Lp~p----~~~~L~~--- 72 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDG-IELPVP----SHFFLPP--- 72 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT-----------EEE-SSS---
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcC-cccCCc----cceeecc---
Confidence 48999999999999999999999999999999999999999999888764432211110 000011 1111111
Q ss_pred CCcccccCCc-cHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHH-----------
Q 015892 125 GQGRAIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID----------- 192 (398)
Q Consensus 125 ~~~~~~~~~~-~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~----------- 192 (398)
.......++ .....+.+++..+. .++||||||||++-+.....+ ...||.++.|.+++...+.-
T Consensus 73 -~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~~lsr~A--hs~ADtLiTPlNdSfvDfDllg~vD~~~~~v 148 (261)
T PF09140_consen 73 -DQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGTDDRLSRVA--HSMADTLITPLNDSFVDFDLLGQVDPETFKV 148 (261)
T ss_dssp -HHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-HHHHHH--HHT-SEEEEEEESSHHHHCCCEEE-TTTS-E
T ss_pred -cccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCCCcHHHHHH--HHhCCEEEccCchhHHhHHHHhccCccccee
Confidence 111111222 12346777777775 789999999996655444433 45779999888886665431
Q ss_pred ----H-HHHHHHHhcc----C-CCee-EEEEccccccC-CCceecccCCChHHHHHHHhCCCeEEecCCChhhhhcccCC
Q 015892 193 ----V-AKGVRMFSKL----K-VPCI-AVVENMCHFDA-DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSG 260 (398)
Q Consensus 193 ----~-~~~~~~l~~~----~-~~~~-~vV~N~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g 260 (398)
. ..++-..++. + .++- .++-||..... +++ ..-.+.++++.++.|..+..-+-.+--++|-.-.|
T Consensus 149 ~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~a~Nk---~~~~~~l~~ls~rigfr~~~G~~eRvi~RelFp~G 225 (261)
T PF09140_consen 149 IGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLDARNK---RRVEEALEELSKRIGFRVAPGFSERVIYRELFPRG 225 (261)
T ss_dssp EEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--HHHH---HHHHHHHHHHHHHHT-EEEE--B--HHHCCCGGGT
T ss_pred cCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHHhHHH---HHHHHHHHHHHHhhCceeCCCcchhhhhHHhcccc
Confidence 0 1121112221 2 2222 23446643322 111 11124577888888976555566666777877888
Q ss_pred CceEeeCCC
Q 015892 261 MPEVAADPC 269 (398)
Q Consensus 261 ~~v~~~~~~ 269 (398)
.++.+....
T Consensus 226 lTllDl~~~ 234 (261)
T PF09140_consen 226 LTLLDLKDA 234 (261)
T ss_dssp --GGGSCTT
T ss_pred chhhccccc
Confidence 887776543
No 59
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=7.1e-20 Score=137.47 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=86.3
Q ss_pred cccceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCC
Q 015892 293 QVSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPD 372 (398)
Q Consensus 293 ~~~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~d 372 (398)
..|+.++..+..+.+.|+|.||.. ++++...||..||||+|.....+|+.+.... .++.+..++++|||+|+|.|+|
T Consensus 3 ~~P~~lrvsk~r~~L~l~f~dg~~-~~L~ae~LRv~sPsAEvqghgp~q~v~v~gk--r~V~i~~i~p~GnYavri~FdD 79 (120)
T COG3536 3 QWPTELRVSKDRKVLSLTFADGAP-FRLPAEFLRVLSPSAEVQGHGPGQRVLVPGK--RNVQIRDIEPVGNYAVRILFDD 79 (120)
T ss_pred CCCceeEEeccCcEEEEEeCCCCc-ccCCHHHHHhcCchHHhcccCCCCceeeecc--ccceEEEeEecCceEEEEEecC
Confidence 457788899999999999999999 9999999999999999999999999998877 6899999999999999999999
Q ss_pred CC-cccCChHHHHhhhh
Q 015892 373 GF-SQIAPYDQLQTMER 388 (398)
Q Consensus 373 gh-~s~y~~~~L~~~~~ 388 (398)
|| +++|+|.||++++.
T Consensus 80 gHDsGiy~W~YL~~lg~ 96 (120)
T COG3536 80 GHDSGIYTWAYLHELGE 96 (120)
T ss_pred CcccCcccHHHHHHHhh
Confidence 99 78999999999854
No 60
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.80 E-value=3.4e-20 Score=179.56 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=75.3
Q ss_pred EEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCC-eeEEEEcCCCCcccCChHHHHh
Q 015892 307 IKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGN-YAVSITWPDGFSQIAPYDQLQT 385 (398)
Q Consensus 307 l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~-~~~~i~w~dgh~s~y~~~~L~~ 385 (398)
+.|+|.||.+ +.||+.||||||+|+.|+|+.|+||.+++.++|.+|+|.+++++++ +.+.|.|+|||.|+|+++||++
T Consensus 2 l~v~w~dg~~-~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQDGKT-SRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHLSEFPAEWLKK 80 (366)
T ss_pred eEEEeCCCCE-eeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCceEcCHHHHhh
Confidence 6799999998 9999999999999999999999999999999999999999999874 4589999999999999999998
Q ss_pred hh
Q 015892 386 ME 387 (398)
Q Consensus 386 ~~ 387 (398)
.+
T Consensus 81 ~~ 82 (366)
T TIGR02409 81 RC 82 (366)
T ss_pred cc
Confidence 75
No 61
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.80 E-value=6e-20 Score=165.21 Aligned_cols=166 Identities=23% Similarity=0.250 Sum_probs=104.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC-------CCCcccCCccc-------ccccCCCCCceeeec
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENR-------LLEMNPEKRTIIPTE 112 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~-------~~~~~l~~~~~-------~~~~~~~~~~i~~~~ 112 (398)
|.++++|||+||||++++||..+|+.|+||++||+|++.+ ++..+++.... ...............
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 3577899999999999999999999999999999999984 33333331000 000000000000000
Q ss_pred cCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhh-hhhc--CCCeEEEEeCCChhh
Q 015892 113 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVV--PLTAAVIVTTPQKLA 189 (398)
Q Consensus 113 ~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~-~~~~--a~d~viiv~~p~~~s 189 (398)
..+..+++.+.. ..+..-.-.+.++++.+.+..||||||||||+........ ..+. .++.+++|+.|+..+
T Consensus 81 ~~~~~~~~~~~~------~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAAA------LPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhcc------CCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH
Confidence 112223332211 1111111125556655543349999999999744221111 1122 247899999999999
Q ss_pred HHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 190 FIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+..+.++++.++..+.+..++|+|++...
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 99999999999999999999999997544
No 62
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.76 E-value=7.5e-19 Score=150.05 Aligned_cols=141 Identities=27% Similarity=0.369 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc--ccc---cC----------CCCCcee
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE---MN----------PEKRTII 109 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~--~~~---~~----------~~~~~i~ 109 (398)
|+|+|+|.+||+||||+|.|||..||++|++|++||+|...+.+..+++.+.. +.+ .. ...+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 78999999999999999999999999999999999999999888877766543 111 11 1122233
Q ss_pred eeccCCeEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh
Q 015892 110 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 189 (398)
Q Consensus 110 ~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s 189 (398)
.....+++++|..........+..+....++..+ +..||+||||+|+......... .+..+|.+++|+.|+..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l-----~~~yd~IivD~~~~~~~~~~~~-~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDAL-----KEHYDYIIVDLPSSLSNPDTQA-VLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHH-----HHHSSEEEEEEESTTTHTHHHH-HHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHH-----HHcCCEEEEECcCCccHHHHHH-HHHHCCEEEEEECCCccc
Confidence 3344899999876665555555555555555555 3699999999999988765431 255789999999999987
Q ss_pred HH
Q 015892 190 FI 191 (398)
Q Consensus 190 ~~ 191 (398)
++
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 63
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.73 E-value=1.8e-17 Score=155.90 Aligned_cols=197 Identities=21% Similarity=0.226 Sum_probs=117.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
||+|.| ++||||||||+|+.+|..+|++|+|||++..||..+. ...|+.+-. .........+||+.+-.+.
T Consensus 1 ~r~~~~-~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L-~d~l~~~~~-------~~~~~v~~~~~L~a~eid~ 71 (305)
T PF02374_consen 1 MRILFF-GGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL-SDVLGQKLG-------GEPTKVEGVPNLSAMEIDP 71 (305)
T ss_dssp -SEEEE-EESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH-HHHHTS--B-------SS-EEETTCSSEEEEE--H
T ss_pred CeEEEE-ecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH-HHHhCCcCC-------CCCeEecCCCCceeeecCH
Confidence 455555 5999999999999999999999999999999997643 334443210 0000001123454443211
Q ss_pred CC---------------------------CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhh-------
Q 015892 124 SG---------------------------QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------- 169 (398)
Q Consensus 124 ~~---------------------------~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~------- 169 (398)
.. ......++-.-...+..+.+.+..++||+||+||||.-....+-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~ 151 (305)
T PF02374_consen 72 EAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLR 151 (305)
T ss_dssp HHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHH
Confidence 00 00000122222223444444444589999999999965321100
Q ss_pred ------------------hh-----------------------------hhc--CCCeEEEEeCCChhhHHHHHHHHHHH
Q 015892 170 ------------------LC-----------------------------QVV--PLTAAVIVTTPQKLAFIDVAKGVRMF 200 (398)
Q Consensus 170 ------------------~~-----------------------------~~~--a~d~viiv~~p~~~s~~~~~~~~~~l 200 (398)
.. .+. ....+++|++|+..++..+.+++..+
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L 231 (305)
T PF02374_consen 152 WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTEL 231 (305)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence 00 000 13478999999999999999999999
Q ss_pred hccCCCeeEEEEccccccCCCc-----eecccCCChHHHHHHHhCCCeEEecCC
Q 015892 201 SKLKVPCIAVVENMCHFDADGK-----RYYPFGRGSGSQVVQQFGIPHLFDLPI 249 (398)
Q Consensus 201 ~~~~~~~~~vV~N~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~ip~ 249 (398)
...+++.-++|+|++....... .....+...++++.+.|....+..+|.
T Consensus 232 ~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~ 285 (305)
T PF02374_consen 232 KLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPL 285 (305)
T ss_dssp HHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE-
T ss_pred HhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999999999999986555331 001123346677778776555666765
No 64
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.72 E-value=2.3e-18 Score=166.19 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=63.3
Q ss_pred EechhhhhcCCCCCccccCCCCcccccCCCCC---CCCccceEEecCCeeEEEEcCCCCcccCChHHHHhhh
Q 015892 319 FLHPATVRRNDRSAQSVDEWTGDQKLQYTDVP---EDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTME 387 (398)
Q Consensus 319 ~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~---~~~~~~~~~~~~~~~~~i~w~dgh~s~y~~~~L~~~~ 387 (398)
.||++||||||+|++|+|+.|+||++++.++| .++.+.++..++++ |+|+|+|||.|.|+++||++.+
T Consensus 1 ~f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~~-l~i~W~dgh~s~y~~~wL~~~~ 71 (362)
T TIGR02410 1 IFHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDEDT-LRVTWPDGHVSKFKEDWLIRHS 71 (362)
T ss_pred CCCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCCe-EEEEecCCCceecCHHHHHhcc
Confidence 37999999999999999999999999888887 99999999988874 9999999999999999999874
No 65
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.68 E-value=1.4e-17 Score=151.78 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=78.3
Q ss_pred cCCcEEEEEecCCCeeEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEec-CCeeEEEEcCCCCcccCCh
Q 015892 302 KSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPM-GNYAVSITWPDGFSQIAPY 380 (398)
Q Consensus 302 ~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~-~~~~~~i~w~dgh~s~y~~ 380 (398)
+..+.++|.|.|+.. ..||.+||||||||+.||+++++.|++.+..++.++.|..+..+ +...|.|+|+|||.|.|++
T Consensus 23 n~~~iv~v~~~d~~~-~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~s~Fpl 101 (407)
T KOG3888|consen 23 NRSHIVQVPWFDRKS-LTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHHSQFPL 101 (407)
T ss_pred CCcceEeecccCCCc-ccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCcccCCH
Confidence 556788899999999 99999999999999999999999999999999999999999998 3457999999999999999
Q ss_pred HHHHhhh
Q 015892 381 DQLQTME 387 (398)
Q Consensus 381 ~~L~~~~ 387 (398)
+||++-|
T Consensus 102 ~wlker~ 108 (407)
T KOG3888|consen 102 QWLKERC 108 (407)
T ss_pred HHHHhhC
Confidence 9999874
No 66
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.63 E-value=2.5e-15 Score=140.92 Aligned_cols=192 Identities=22% Similarity=0.278 Sum_probs=120.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc---cCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~---l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
++++ |+++||||||||+|+.+|..+|+.|+|||+|-.||..+..+.+ +|.+..-.. +||+.+.
T Consensus 2 ~riv-~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~-------------~nL~a~e 67 (322)
T COG0003 2 TRIV-FFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG-------------PNLDALE 67 (322)
T ss_pred cEEE-EEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC-------------CCCceee
Confidence 4444 5569999999999999999999999999999999987665544 122111000 2222222
Q ss_pred cc---------------------------cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh-----
Q 015892 121 FG---------------------------FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL----- 168 (398)
Q Consensus 121 ~~---------------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~----- 168 (398)
.+ .........++-+-...+..+.+....+.||+||+||+|.-....+
T Consensus 68 iD~~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~ 147 (322)
T COG0003 68 LDPEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPE 147 (322)
T ss_pred ecHHHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHH
Confidence 11 0111112223333333455666666568899999999995432110
Q ss_pred ------h-hh-----hh--------------------------------------c--CCCeEEEEeCCChhhHHHHHHH
Q 015892 169 ------T-LC-----QV--------------------------------------V--PLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 169 ------~-~~-----~~--------------------------------------~--a~d~viiv~~p~~~s~~~~~~~ 196 (398)
. .. .+ . .-....+|..|+..++....+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra 227 (322)
T COG0003 148 VLGWYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRA 227 (322)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHH
Confidence 0 00 00 0 0245688999999999999999
Q ss_pred HHHHhccCCCeeEEEEccccccCCCc----eecccCCChHHHHHHHhCCCeEEecCC
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGK----RYYPFGRGSGSQVVQQFGIPHLFDLPI 249 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~ip~ 249 (398)
+..+...+++..++++|++.+..... .....++....++.+.|....+..+|.
T Consensus 228 ~~~l~~~~i~v~~vi~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~ 284 (322)
T COG0003 228 VERLSLYGIPVDAVIVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPL 284 (322)
T ss_pred HHHHHHcCCchheeeeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEecc
Confidence 99999999999999999876665431 111122234566666776555666665
No 67
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.62 E-value=2.1e-16 Score=138.89 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=66.1
Q ss_pred eEEechhhhhcCCCCCccccCCCCcccccCCCCCCCCccceEEecCCeeEEEEcCCCCcccCChHHHHhhh
Q 015892 317 EFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTME 387 (398)
Q Consensus 317 ~~~~~~~~LR~~c~c~~c~~~~t~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~w~dgh~s~y~~~~L~~~~ 387 (398)
...++++||||||+|++|+|..|.||..|+.++|.++.|+.+.+++. .|+|+|+|||.|.|+.+|+-.-+
T Consensus 17 ~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~skydl~~i~~~~ 86 (371)
T KOG3889|consen 17 KLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQSKYDLGNIIREG 86 (371)
T ss_pred eEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccccccchhHHhhhh
Confidence 47899999999999999999999999999999999999999999987 69999999999999999997663
No 68
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.54 E-value=1.6e-13 Score=115.48 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=75.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CcccCCcccccccCCCCCceeeeccCCeEE--Eeccc
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKL--VSFGF 123 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~l~v--lp~~~ 123 (398)
|.+. +|||+||||++.+++..++++|.||+++|+|++.+.. ..+++....+. ... ..+++.+ +|.+.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRME-------RHA--SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhh-------hee--cCCCceEEEcCCcC
Confidence 4554 9999999999999999999999999999999975432 11222111110 111 1134433 33331
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 190 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~ 190 (398)
..... .......++ .+....|||||||| +|.+...... +..+|.+++|++|+...-
T Consensus 72 ~~~~~----~~~~~~~~~----~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~ 127 (148)
T cd03114 72 FLGGL----SRATPEVIR----VLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDD 127 (148)
T ss_pred ccccc----chhHHHHHH----HHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhH
Confidence 11110 011222232 22225899999999 7777665554 567899999999994433
No 69
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.48 E-value=1.1e-12 Score=121.37 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+.+++|+|+ +++|+||||++++||..+++.|++|++||+|++..... ..+.. ....-++.+++.
T Consensus 70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~------~ql~~---------~~~~~~i~~~~~ 133 (272)
T TIGR00064 70 NKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI------EQLEE---------WAKRLGVDVIKQ 133 (272)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHH------HHHHH---------HHHhCCeEEEeC
Confidence 346899999 79999999999999999999999999999998643210 00000 000113444432
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhh------hhhc------CCCeEEEEeCCChhh
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLA 189 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~------~~~~------a~d~viiv~~p~~~s 189 (398)
.... +........+.....+.||+|||||||......... .... ..+.+++|+... ..
T Consensus 134 ~~~~---------dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~ 203 (272)
T TIGR00064 134 KEGA---------DPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TG 203 (272)
T ss_pred CCCC---------CHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CC
Confidence 2211 111111111221113789999999999765221100 0011 268889998886 45
Q ss_pred HHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 190 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
-..+.....+.+..+ ..++|+|+++...+. +..-.+...++.|+.+
T Consensus 204 ~~~~~~~~~f~~~~~--~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~ 249 (272)
T TIGR00064 204 QNALEQAKVFNEAVG--LTGIILTKLDGTAKG--------GIILSIAYELKLPIKF 249 (272)
T ss_pred HHHHHHHHHHHhhCC--CCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEE
Confidence 555555544444443 579999997655443 3556666677876544
No 70
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.7e-13 Score=120.17 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=110.9
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc---cCCcccccccCCCCCceeeecc
Q 015892 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPEKRTIIPTEY 113 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~---l~~~~~~~~~~~~~~~i~~~~~ 113 (398)
..-+.+......|+++||||||||.+..||..||+-+.+||+|-.||..|.++.+ ++...+...+-...-+......
T Consensus 11 ~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~ 90 (323)
T KOG2825|consen 11 QNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPN 90 (323)
T ss_pred HHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCc
Confidence 3344445566778889999999999999999999999999999999988877665 2222221111111000000000
Q ss_pred CCeEEEec--------------ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhh----------
Q 015892 114 LGVKLVSF--------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT---------- 169 (398)
Q Consensus 114 ~~l~vlp~--------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~---------- 169 (398)
.++.-++- ++..+-...+++-+-.-.+.+.+..++.-+||+||+||.|.-..+.+-
T Consensus 91 ~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~l 170 (323)
T KOG2825|consen 91 VEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGL 170 (323)
T ss_pred hhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHH
Confidence 00110110 000000001111111122344444455578999999999943211100
Q ss_pred -------------------hhhh----------------------------cCCCeEEEEeCCChhhHHHHHHHHHHHhc
Q 015892 170 -------------------LCQV----------------------------VPLTAAVIVTTPQKLAFIDVAKGVRMFSK 202 (398)
Q Consensus 170 -------------------~~~~----------------------------~a~d~viiv~~p~~~s~~~~~~~~~~l~~ 202 (398)
...+ -.+...++|+.|+..|+..+.|+++.+.+
T Consensus 171 gKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k 250 (323)
T KOG2825|consen 171 GKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAK 250 (323)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHh
Confidence 0000 02567899999999999999999999999
Q ss_pred cCCCeeEEEEccccccC
Q 015892 203 LKVPCIAVVENMCHFDA 219 (398)
Q Consensus 203 ~~~~~~~vV~N~~~~~~ 219 (398)
.+++...+|+|..-+..
T Consensus 251 ~~idthnIIVNQLL~~~ 267 (323)
T KOG2825|consen 251 QGIDTHNIIVNQLLFPD 267 (323)
T ss_pred cCCcccceeeeeccCCC
Confidence 99999999999976544
No 71
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.46 E-value=2.8e-13 Score=108.89 Aligned_cols=109 Identities=30% Similarity=0.259 Sum_probs=69.5
Q ss_pred EcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeE-EEecc--cCCC
Q 015892 50 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVK-LVSFG--FSGQ 126 (398)
Q Consensus 50 ~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~-vlp~~--~~~~ 126 (398)
..+|||+||||++.+||..|+++|++|+++|+|| ++....+... ..++.. +..+. ....
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~----------------~~~~~~~i~~g~~~~~~~ 65 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVE----------------VGEIKLLLVMGMGRPGGE 65 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhc----------------cCCceEEEEecccccCCC
Confidence 3489999999999999999999999999999999 2221111111 001111 11111 1111
Q ss_pred cccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEE
Q 015892 127 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 182 (398)
Q Consensus 127 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv 182 (398)
....... ..+++++..+....|||+|+||++|+......+ ...+|.+++|
T Consensus 66 g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 66 GCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 1111111 156666666544899999999999999877665 3466877776
No 72
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.45 E-value=1.5e-12 Score=116.91 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 90 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~ 90 (398)
|++++.|.++||||||||+|++||.+|+++|++|++||+||+.++...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 789999999999999999999999999999999999999999865543
No 73
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.41 E-value=2.8e-12 Score=99.64 Aligned_cols=92 Identities=40% Similarity=0.587 Sum_probs=74.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 126 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~ 126 (398)
+++. +|||+||||++.+||..|++.|++|+++|
T Consensus 2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~---------------------------------------------- 34 (99)
T cd01983 2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID---------------------------------------------- 34 (99)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence 4444 66699999999999999999999999999
Q ss_pred cccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh---hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHh--
Q 015892 127 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS-- 201 (398)
Q Consensus 127 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~---~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~-- 201 (398)
|++|+|++++.+... ... ...+|.+++|+.|+..++....+..+...
T Consensus 35 --------------------------d~iivD~~~~~~~~~~~~~~~--~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~ 86 (99)
T cd01983 35 --------------------------DYVLIDTPPGLGLLVLLCLLA--LLAADLVIIVTTPEALAVLGARRLTEVVLEL 86 (99)
T ss_pred --------------------------CEEEEeCCCCccchhhhhhhh--hhhCCEEEEecCCchhhHHHHHHHHHHHHHh
Confidence 899999999998775 333 45779999999999999998888854332
Q ss_pred -ccCCCeeEEEEc
Q 015892 202 -KLKVPCIAVVEN 213 (398)
Q Consensus 202 -~~~~~~~~vV~N 213 (398)
.......++++|
T Consensus 87 ~~~~~~~~~vv~N 99 (99)
T cd01983 87 AIEGLRPVGVVVN 99 (99)
T ss_pred hccCCceEEEEeC
Confidence 234455667765
No 74
>PRK10867 signal recognition particle protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=120.61 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.+.+|.++ +..|+||||++++||..|+++ |++|++||+|++.+....-+.. .....++++++.
T Consensus 99 ~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~---------------~a~~~gv~v~~~ 162 (433)
T PRK10867 99 PPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT---------------LGEQIGVPVFPS 162 (433)
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH---------------HHhhcCCeEEec
Confidence 35677766 799999999999999999998 9999999999987643211100 001234555553
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhh----hhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~----~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
+.. .....+....+.......||+|||||++.... .... .......+.+++|+.+.. -.++..
T Consensus 163 ~~~---------~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~av~ 231 (433)
T PRK10867 163 GDG---------QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQDAVN 231 (433)
T ss_pred CCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHHHHH
Confidence 211 11223334444333336899999999997642 1111 111223467788888642 234444
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
..+.+.+ .+++.++|+|+.+...+. +.+..+...++.|+.+.
T Consensus 232 ~a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~fi 273 (433)
T PRK10867 232 TAKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKFI 273 (433)
T ss_pred HHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 4444443 356679999997654443 35677888888876543
No 75
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.34 E-value=4e-11 Score=104.01 Aligned_cols=162 Identities=21% Similarity=0.209 Sum_probs=96.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCCCcc
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 128 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~ 128 (398)
+..++.|+||||++.++|..+++.|.+|+++|+|++.+.....+.. .....++++++....
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~---- 64 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV---------------LGEQVGVPVFEEGEG---- 64 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH---------------hcccCCeEEEecCCC----
Confidence 3449999999999999999999999999999999976543221110 001134555553211
Q ss_pred cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhh-h---hhhcCCCeEEEEeCCChhhHHHHHHHHHHHhc
Q 015892 129 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT-L---CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 202 (398)
Q Consensus 129 ~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~-~---~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~ 202 (398)
......+.+.+.......||+||||+|+.... .... . ......+.+++|+.+.. .-.......+..+.
T Consensus 65 -----~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~~~~~~~~~~ 138 (173)
T cd03115 65 -----KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAVNQAKAFNEA 138 (173)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHHHHHHHHHhh
Confidence 11222333333322247899999999997632 1111 1 11123688888998853 22333333333334
Q ss_pred cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 203 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 203 ~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+ ..++|+|+++...+.. ..-.+....+.|+.+
T Consensus 139 ~~--~~~viltk~D~~~~~g--------~~~~~~~~~~~p~~~ 171 (173)
T cd03115 139 LG--ITGVILTKLDGDARGG--------AALSIRAVTGKPIKF 171 (173)
T ss_pred CC--CCEEEEECCcCCCCcc--------hhhhhHHHHCcCeEe
Confidence 44 5789999976544332 233377778877543
No 76
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.33 E-value=1.2e-11 Score=111.89 Aligned_cols=190 Identities=14% Similarity=0.050 Sum_probs=109.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCccc-CCccccccc-CCCCCceeeeccCCeEEEecccC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV-SPENRLLEM-NPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l-~~~~~~~~~-~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
|.|.+.-.|+|||+++++|+..|.++|++|...- |......... ..+..+... ...... ......+. .....+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K--Pv~~g~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~~~~~s 76 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK--PVQSGCEETDRNGDALALQRLSGLPLD--YEDVNPYR-FEEPLS 76 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe--eEecCCCCCCCcHHHHHHHHHcCCCCC--hhhcCcee-eCCCCC
Confidence 5678889999999999999999999999998843 3221111000 000000000 000000 00000111 111110
Q ss_pred CCcccccC-CccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCC-------CeEEEEeCCChhhHHHHHHH
Q 015892 125 GQGRAIMR-GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL-------TAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 125 ~~~~~~~~-~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~-------d~viiv~~p~~~s~~~~~~~ 196 (398)
..-..... .......+.+.++.+. +.||+||||+++++....... +..+ ..+++|+.++..++..+...
T Consensus 77 p~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~--~~~adl~~~l~~pvilV~~~~~~~i~~~~~~ 153 (222)
T PRK00090 77 PHLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTED--LTLADLAKQLQLPVILVVGVKLGCINHTLLT 153 (222)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCC--CcHHHHHHHhCCCEEEEECCCCcHHHHHHHH
Confidence 00000000 0111233444444443 789999999998864322111 1111 34789999999998888888
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCC
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 249 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~ 249 (398)
++.++..+.+..++|+|++.... . ...++..+.+++.++.++++.+|+
T Consensus 154 i~~l~~~~~~i~gvIlN~~~~~~-~----~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 154 LEAIRARGLPLAGWVANGIPPEP-G----LRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHHHHCCCCeEEEEEccCCCcc-h----hHHHHHHHHHHHHcCCCeEEecCC
Confidence 88888888899999999965431 1 123356788899999999999997
No 77
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.30 E-value=1.1e-11 Score=91.15 Aligned_cols=68 Identities=56% Similarity=0.937 Sum_probs=54.9
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCC
Q 015892 153 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 220 (398)
Q Consensus 153 D~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~ 220 (398)
||+|||+|||.++..++..+....+.+++|++|+..|..++.+.++++++.+++++|+|.||..+.+.
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp 69 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCP 69 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-T
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCC
Confidence 89999999999999998888778899999999999999999999999999999999999999887763
No 78
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.28 E-value=1.6e-10 Score=109.20 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|+++ +..|+||||++.+||..++..|++|+++|+|++......-+. ......++.+++..
T Consensus 113 ~~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~---------------~~a~~~~i~~~~~~ 176 (318)
T PRK10416 113 KPFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQ---------------VWGERVGVPVIAQK 176 (318)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHH---------------HHHHHcCceEEEeC
Confidence 46899998 588999999999999999999999999999997543110000 00111245555532
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh------hhhh------hcCCCeEEEEeCCChhhH
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQ------VVPLTAAVIVTTPQKLAF 190 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~------~~~~------~~a~d~viiv~~p~~~s~ 190 (398)
..... .....+.+.... ...||+|||||||....... .... -...+..++|+.+.. .-
T Consensus 177 ~~~dp--------a~~v~~~l~~~~-~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-g~ 246 (318)
T PRK10416 177 EGADP--------ASVAFDAIQAAK-ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-GQ 246 (318)
T ss_pred CCCCH--------HHHHHHHHHHHH-hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-Ch
Confidence 11110 111122222212 37899999999997652110 1100 013466788888773 44
Q ss_pred HHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 191 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
.++.+...+.... ...++|+|+.+...+. +..-.+...++.|+.+.
T Consensus 247 ~~~~~a~~f~~~~--~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 247 NALSQAKAFHEAV--GLTGIILTKLDGTAKG--------GVVFAIADELGIPIKFI 292 (318)
T ss_pred HHHHHHHHHHhhC--CCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 4555443333333 4569999997644433 35566667778775543
No 79
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.28 E-value=5.2e-11 Score=102.57 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=89.2
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccc-c---ccCCCCCceeeeccCCeEEEecccC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-L---EMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~-~---~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
|++..+|+||||+|.+||..|+++|+||.+++--..+... .+.+... . ........+ ..+. ...+..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~---~d~d~~~i~~~~~~~~~~~~~-----~~~~-~~~~~~ 72 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEK---TNSDALLLQNISGTALDWDEV-----NPYA-FALPLS 72 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCC---CchHHHHHHHHcCCCCchhcc-----CCee-eCCCCC
Confidence 5678999999999999999999999999997533322110 0000000 0 000000000 0000 000000
Q ss_pred CCccccc-CCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHHHH
Q 015892 125 GQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 197 (398)
Q Consensus 125 ~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~ 197 (398)
..-.... ..+.....+.+.+..+ ++.||+||||+|+++.... ..... .-.+.+++|+.+...++..+....
T Consensus 73 p~~~~~~~~~~~~~~~i~~~~~~l-~~~~D~viid~~g~~~~~~~~~~~~~dl~~-~~~~~vilV~~~~~~~~~~~~~~~ 150 (166)
T TIGR00347 73 PHIAADQEGRPIDLEELSKHLRTL-EQKYDFVLVEGAGGLCVPITEEYTTADLIK-LLQLPVILVVRVKLGTINHTLLTV 150 (166)
T ss_pred hHHHHHHhCCCCCHHHHHHHHHHH-HhcCCEEEEEcCCccccCCCCCCcHHHHHH-HhCCCEEEEECCCCcHHHHHHHHH
Confidence 0000001 1011122244444444 3789999999998755211 11111 113568999999999999999999
Q ss_pred HHHhccCCCeeEEEEc
Q 015892 198 RMFSKLKVPCIAVVEN 213 (398)
Q Consensus 198 ~~l~~~~~~~~~vV~N 213 (398)
+.+++.+.++.|+|+|
T Consensus 151 ~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 151 EHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHCCCCeEEEEeC
Confidence 9999999999999988
No 80
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.27 E-value=1e-10 Score=114.33 Aligned_cols=167 Identities=20% Similarity=0.232 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
..|.+..+..|+||||++++||..|+ +.|++|++||+|++.+....-+... ....++.+.+.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~---------------a~~~gvp~~~~~~ 163 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVL---------------GQQVGVPVFALGK 163 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHH---------------HHhcCCceEecCC
Confidence 34555559999999999999999987 6899999999999765422111000 0012233333211
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhhh----hhhcCCCeEEEEeCCChhhHHHHHHHH
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLTL----CQVVPLTAAVIVTTPQKLAFIDVAKGV 197 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~~----~~~~a~d~viiv~~p~~~s~~~~~~~~ 197 (398)
. ........+.+.......||+|||||++.... ..... ......+.+++|+.+.. -.++....
T Consensus 164 ~---------~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t--gq~~~~~a 232 (428)
T TIGR00959 164 G---------QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT--GQDAVNTA 232 (428)
T ss_pred C---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc--hHHHHHHH
Confidence 0 11122233333333237899999999996532 11111 11223577888888652 23444444
Q ss_pred HHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 198 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 198 ~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
+.+.. .+++.++|+|+.+...+. +.+..+...++.|+.+.
T Consensus 233 ~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~fi 272 (428)
T TIGR00959 233 KTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKFI 272 (428)
T ss_pred HHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 44432 245679999997654433 35778888888876543
No 81
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.25 E-value=1.7e-10 Score=112.21 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+.+|.++ +..|+||||++++||..|+++|++|++|++|++.++....+... ....++.+....
T Consensus 99 ~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~---------------a~~~~vp~~~~~ 162 (429)
T TIGR01425 99 KQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQN---------------ATKARIPFYGSY 162 (429)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHH---------------hhccCCeEEeec
Confidence 35788887 68999999999999999999999999999999875432221100 000123222211
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh---hhhh---hhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLC---QVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~---~~~~---~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
. ..+......+.+..+....||+|||||++...... ..+. .....+.+++|+.+... .+....
T Consensus 163 ~---------~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~ 231 (429)
T TIGR01425 163 T---------ESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQ 231 (429)
T ss_pred C---------CCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHH
Confidence 0 11112223333333323689999999998664311 1111 12234678888886432 122333
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+.+.+ .....++|+|+.+...+. +..-.+....+.|+.+
T Consensus 232 a~~F~~-~~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 232 AKAFKD-SVDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIF 271 (429)
T ss_pred HHHHHh-ccCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEE
Confidence 344432 235679999997766544 3455666677776543
No 82
>PRK13768 GTPase; Provisional
Probab=99.25 E-value=2.7e-11 Score=111.39 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 88 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~ 88 (398)
|+++|.|. ++||+||||++.+++..++.+|++|++||+||+...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 67777776 6699999999999999999999999999999986544
No 83
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.21 E-value=2e-10 Score=112.67 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=101.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
..+.+|.++ +..|+||||++++||..|.++|++|++||+|++.+....-+.. + ....++.+...
T Consensus 93 ~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~---l------------a~~~gvp~~~~ 156 (437)
T PRK00771 93 LKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ---L------------AEKIGVPFYGD 156 (437)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH---H------------HHHcCCcEEec
Confidence 346778877 7899999999999999999999999999999976532110000 0 00012222221
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
. ........+...++.. ..+|+|||||+|...... .........|.+++|+.+... .++..
T Consensus 157 ~---------~~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~ 223 (437)
T PRK00771 157 P---------DNKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKN 223 (437)
T ss_pred C---------CccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHH
Confidence 1 0112233455555544 457999999998665321 111223457889999998653 22223
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
..+.+.. .++..++|+|+.+...+. +.+-.+....+.|+.+.
T Consensus 224 ~a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~fi 265 (437)
T PRK00771 224 QAKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKFI 265 (437)
T ss_pred HHHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEEE
Confidence 3333322 245689999997655544 35667777788775543
No 84
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.21 E-value=2e-10 Score=106.19 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|+.... . .-+.+ +..................+-+.
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g~D-s~~~~~aGa~~v~~~s~~~~~~~---- 71 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDGTD-TGRHFDAGADVVYGLTDGEWVAS---- 71 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCCCC-cHHHHHCCCcEEEEecCCeEEEE----
Confidence 6799999886 9999999999999999999 8999999995421 0 00000 00000000111111111111100
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCC-eEEEEeCCChhhHHHHHHHHHHHhc
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFIDVAKGVRMFSK 202 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d-~viiv~~p~~~s~~~~~~~~~~l~~ 202 (398)
..... +.+++..+. ..||+||||+++.....-.....+...| .+++|..|+... +..+++.+++
T Consensus 72 -------~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d---~~~lve~~~~ 136 (274)
T PRK14493 72 -------GRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLD---TEDLVAALES 136 (274)
T ss_pred -------ecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccC---HHHHHHHHHh
Confidence 01122 344444333 5799999999998763222222344556 788888888877 4455555554
Q ss_pred cCCCe-eEEEEccccccCCCceecccCCChHHHHHHHhCCC--eEEecCCChhhhhcccCCCceEeeCC-CCHHHHHHHH
Q 015892 203 LKVPC-IAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP--HLFDLPIRPTLSASGDSGMPEVAADP-CGEVANTFQD 278 (398)
Q Consensus 203 ~~~~~-~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~ip~~~~i~~a~~~g~~v~~~~~-~s~~~~~~~~ 278 (398)
...++ +..++|++....... ..|.- +.+.+.... .+...+....+|.. ...+.+.+.+
T Consensus 137 ~~~~l~~~~li~~~~~~~~~~---------------~~GAi~~F~G~VR~r~---~~~g~~v~~L~ye~y~~~A~~~l~~ 198 (274)
T PRK14493 137 QPPYVTLESLVAKVKRSPDAD---------------KAGAIATFTGRVRAKE---DADDEPTEYLEFEKYDGVADERMAA 198 (274)
T ss_pred cCCCCCHHHHHHHHhccCCCC---------------CCcEEEEEEeEEEccc---cCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 43221 233445533211100 00211 123333111 11233445566643 3456778888
Q ss_pred HHHHHHHH
Q 015892 279 LGVCVVQQ 286 (398)
Q Consensus 279 la~~i~~~ 286 (398)
+++++.++
T Consensus 199 I~~e~~~~ 206 (274)
T PRK14493 199 IREELKQR 206 (274)
T ss_pred HHHHHHHh
Confidence 88877765
No 85
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.18 E-value=5.5e-10 Score=106.38 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC-CcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~-~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.+++|++++. +|+||||+++.||..|..+|++|+++|+|++.... ..+- . .....++.++..
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk-------~---------yae~lgipv~v~ 302 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ-------D---------YVKTIGFEVIAV 302 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-------H---------HhhhcCCcEEec
Confidence 3578888855 99999999999999999999999999999985221 1110 0 001123444432
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccC-CCCcEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCChhhHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~-~~yD~VIID~pp~~~~~~~------~~~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
. .. ..+...+..+.. .+||+|||||++....... .......-+.+++|+.+.. .-.++.
T Consensus 303 ~---------d~----~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-k~~d~~ 368 (436)
T PRK11889 303 R---------DE----AAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMI 368 (436)
T ss_pred C---------CH----HHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-ChHHHH
Confidence 1 11 112333333321 3699999999986542211 1111122366777766543 334556
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
..++.+.. .++-++|+++.+...+. +.+-.+...++.|+.+.
T Consensus 369 ~i~~~F~~--~~idglI~TKLDET~k~--------G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 369 EIITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 410 (436)
T ss_pred HHHHHhcC--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 66666665 45568999996655433 45667777788775543
No 86
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.12 E-value=1.9e-09 Score=107.35 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=114.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
+|+.|.|.+.++|+||||++++|+..|+++|++|..+..+|+.... ..... .......+++...
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~--------~~~~~------~~g~~~~~ld~~~-- 65 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDP--------AYHTA------ATGRPSRNLDSWM-- 65 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccH--------HHHHH------HhCCCcccCCcee--
Confidence 4678999999999999999999999999999999999886543111 00000 0000001122111
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCChhhHH--
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFI-- 191 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~---------~~~~~~~~~a~d~viiv~~p~~~s~~-- 191 (398)
.. ...+.+.+..+. ..||++||....|+-+ .....+.... .-+++|+.+...+..
T Consensus 66 --------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a 131 (451)
T PRK01077 66 --------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAA 131 (451)
T ss_pred --------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHH
Confidence 11 123444444443 7899999987754422 1122222222 356777777654432
Q ss_pred HHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh-hcccCCCceEeeCCCC
Q 015892 192 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDSGMPEVAADPCG 270 (398)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~-~a~~~g~~v~~~~~~s 270 (398)
.+...+..+ ..++++.++|+|++.... . .+...+..+..+.++++.||+++.+. .+...|. +......
T Consensus 132 ~l~~~~~~~-~~~i~i~GvI~N~v~~~~-~-------~~~l~~~l~~~gipvLG~IP~~~~l~~p~r~lgl--~~~~e~~ 200 (451)
T PRK01077 132 ALVLGFATF-DPDVRIAGVILNRVGSER-H-------YQLLREALERCGIPVLGALPRDAALALPERHLGL--VQASEHG 200 (451)
T ss_pred HHHHHHHHh-CCCCCEEEEEEECCCChh-H-------HHHHHHHHHhcCCCEEEEeeCCcccCCCccccCC--CCccccc
Confidence 222222333 226788999999974321 0 12234444457899999999998664 2232332 1111122
Q ss_pred HHHHHHHHHHHHHHHH
Q 015892 271 EVANTFQDLGVCVVQQ 286 (398)
Q Consensus 271 ~~~~~~~~la~~i~~~ 286 (398)
...+.+..+++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (451)
T PRK01077 201 DLEARLDALADLVEEH 216 (451)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 3455566666665544
No 87
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.11 E-value=3.3e-09 Score=87.81 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=94.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCCCc
Q 015892 48 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 127 (398)
Q Consensus 48 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~~ 127 (398)
.|..++| +|||+++..|+..|.++|.+|..+....+
T Consensus 3 ~~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~------------------------------------------- 38 (134)
T cd03109 3 GFGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT------------------------------------------- 38 (134)
T ss_pred EEeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC-------------------------------------------
Confidence 3455677 99999999999999999999999887774
Q ss_pred ccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHh
Q 015892 128 RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 201 (398)
Q Consensus 128 ~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~ 201 (398)
+|++||+.++|+... ......... ..+++|++|+..++.++...++.++
T Consensus 39 ------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~ 93 (134)
T cd03109 39 ------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAAR 93 (134)
T ss_pred ------------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHH
Confidence 466777766655411 111111111 3479999999999998999999999
Q ss_pred ccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecC
Q 015892 202 KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 248 (398)
Q Consensus 202 ~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip 248 (398)
..+....+++.|+...... ......+.+++.++.+.++.+|
T Consensus 94 ~~g~~i~gvi~N~~~~~~~------~~~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 94 IKGIILNGVLGNVIVEKEG------LATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred hcCCceeEEEEccCCCccc------hhhhhHHHHHHhcCCCEEEeCC
Confidence 9999999999998654321 1113578889999999998886
No 88
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=2.3e-09 Score=101.82 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
..++|+|++.+ ||||||++++||..+.++|++|.+|++|+|......-+ .... ...++.+...
T Consensus 205 ~~~ii~lvGpt-GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQL------k~ya---------e~lgvpv~~~- 267 (407)
T PRK12726 205 NHRIISLIGQT-GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF------QGYA---------DKLDVELIVA- 267 (407)
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHH------HHHh---------hcCCCCEEec-
Confidence 36899999765 99999999999999999999999999999865321111 0000 0012222211
Q ss_pred cCCCcccccCCccHHHHHHHHHhhcc-CCCCcEEEEcCCCCCCh--hhhhh----hhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGD--IQLTL----CQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIID~pp~~~~--~~~~~----~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
..... +...+..+. .+.||+|||||++.... ..+.. ......+.+++|..+. ....++..
T Consensus 268 --------~dp~d----L~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~ 334 (407)
T PRK12726 268 --------TSPAE----LEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMT 334 (407)
T ss_pred --------CCHHH----HHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHH
Confidence 01111 233333221 15799999999987431 11111 1111234556666553 23334444
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.++.+.. ++.-++|+++.+...+. +.+-.+....+.|+.+
T Consensus 335 i~~~f~~--l~i~glI~TKLDET~~~--------G~~Lsv~~~tglPIsy 374 (407)
T PRK12726 335 ILPKLAE--IPIDGFIITKMDETTRI--------GDLYTVMQETNLPVLY 374 (407)
T ss_pred HHHhcCc--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEE
Confidence 4444433 44568999997655443 4566777788877544
No 89
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.07 E-value=8.1e-10 Score=103.38 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=54.3
Q ss_pred CeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCcee----cccCCChHHHHHHHhCCCeEEecCCC
Q 015892 177 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 250 (398)
Q Consensus 177 d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~ip~~ 250 (398)
..+++|+.|+..++..+.++++.+...+.+..++|+|++......... ...+++.++++.+.++...+..+|..
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 458999999999999999999999999999999999997654211111 12334566777777765456666653
No 90
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.02 E-value=4.9e-09 Score=101.21 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=91.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHH-HHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~L-a~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
+++|+|. +.+|+||||++.+||..+ ..+|++|+++|+|+|.......+... ....++.+.+..
T Consensus 223 ~~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~y---------------Ae~lgvp~~~~~ 286 (432)
T PRK12724 223 RKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRY---------------ADTMGMPFYPVK 286 (432)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHH---------------HHhcCCCeeehH
Confidence 3556665 899999999999999876 57899999999999876433211100 011122222210
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhhhh-hhc------CCCeEEEEeCCChhhHHHH
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLTLC-QVV------PLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~~~-~~~------a~d~viiv~~p~~~s~~~~ 193 (398)
........+ .+..||+|||||++.... ..+..+ .+. .-...++|+.+... -.++
T Consensus 287 ------------~~~~l~~~l----~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~-~~~~ 349 (432)
T PRK12724 287 ------------DIKKFKETL----ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS-YHHT 349 (432)
T ss_pred ------------HHHHHHHHH----HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC-HHHH
Confidence 011222222 236899999999764321 111111 011 12356677766543 3455
Q ss_pred HHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 194 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
....+.+..+++ -++|+++.+...+. +.+-.+....+.|+.+
T Consensus 350 ~~~~~~f~~~~~--~glIlTKLDEt~~~--------G~il~i~~~~~lPI~y 391 (432)
T PRK12724 350 LTVLKAYESLNY--RRILLTKLDEADFL--------GSFLELADTYSKSFTY 391 (432)
T ss_pred HHHHHHhcCCCC--CEEEEEcccCCCCc--------cHHHHHHHHHCCCEEE
Confidence 566666655544 58999997655443 3556677777877544
No 91
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.01 E-value=9.8e-09 Score=96.94 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc-ccCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
..+++|.|. +++|+||||++.+|+..+.++|++|.+|++|++.+.+.. +++....+.. ....+++.+.+
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 101 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRS 101 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeee
Confidence 357888888 889999999999999999999999999999997643321 1221111110 01123444433
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHH
Q 015892 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF 200 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l 200 (398)
.+.... .. ........+++.+....||+|||||++ .+...... ...+|.++++..|... ..+......+
T Consensus 102 ~~~~~~----~~--~~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~~--~el~~~~~~l 170 (300)
T TIGR00750 102 MPTRGH----LG--GLSQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGTG--DDLQGIKAGL 170 (300)
T ss_pred cCcccc----cc--chhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCcc--HHHHHHHHHH
Confidence 222110 00 011223333333334789999999985 55544444 3456888888766532 2333333322
Q ss_pred hccCCCeeEEEEcccccc
Q 015892 201 SKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 201 ~~~~~~~~~vV~N~~~~~ 218 (398)
. +.+ .-+|+|+++..
T Consensus 171 ~--~~~-~ivv~NK~Dl~ 185 (300)
T TIGR00750 171 M--EIA-DIYVVNKADGE 185 (300)
T ss_pred h--hhc-cEEEEEccccc
Confidence 2 222 25788997543
No 92
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.01 E-value=1.1e-08 Score=92.89 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=112.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc----cCCcccccccCCCCCceeeeccCCeEE
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM----VSPENRLLEMNPEKRTIIPTEYLGVKL 118 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~----l~~~~~~~~~~~~~~~i~~~~~~~l~v 118 (398)
|++.|.|.+.-.|+|||+++..|+..|.++|.+|..+ -|..+..... ...+..+....... +...+.+.
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~--KPi~~g~~~~~~~~~~~D~~~l~~~~~~----~~~~~~~~- 73 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGY--KPVAKGSKETPEGLRNKDALVLQSVSSI----ELPYEAVN- 73 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--CccccCCccCCCCCchHHHHHHHHhcCC----CCCHHhcc-
Confidence 5678999999999999999999999999999999986 4433321110 00000000000000 00000000
Q ss_pred EecccCCCcccccCCc--cHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh-----hhhhhhcCCCeEEEEeCCChhhHH
Q 015892 119 VSFGFSGQGRAIMRGP--MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQKLAFI 191 (398)
Q Consensus 119 lp~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-----~~~~~~~a~d~viiv~~p~~~s~~ 191 (398)
|..+.........+. ....+.+.+ ..+. ..||+|||++.+|+.... ..-.....---+++|+.....++.
T Consensus 74 -p~~~~~~~a~~~~~~~i~~~~i~~~~-~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~in 150 (231)
T PRK12374 74 -PIALSEEESSVAHSCPINYTLMSNGL-ANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCIN 150 (231)
T ss_pred -CeecCCCcChHHcCCcCCHHHHHHHH-HHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChHH
Confidence 001111100001111 112333333 3343 899999999998654322 111111122457888877777888
Q ss_pred HHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChh
Q 015892 192 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 252 (398)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~ 252 (398)
.+.-..+.+...+++..++|+|++..... ...+..+.+.+..+.+.++.+|+.+.
T Consensus 151 ~~lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~~ 205 (231)
T PRK12374 151 HALLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLPR 205 (231)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCCC
Confidence 88888888888899999999999754321 12234567777778889999998643
No 93
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.00 E-value=7.4e-09 Score=102.40 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC--CCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
.+++|+|+ +.+|+||||++.+||..++++ |++|.+|+.|++.......+. ... ...++.+..
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk------~ya---------~iLgv~v~~ 412 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH------SYG---------RQLGIAVHE 412 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH------Hhh---------cccCceeEe
Confidence 46899998 678999999999999998875 589999999997643211110 000 001221111
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh-----hhh-h-hcCCCeEEEEeCCChhhHHHH
Q 015892 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-----TLC-Q-VVPLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~-----~~~-~-~~a~d~viiv~~p~~~s~~~~ 193 (398)
. ... ..+...+..+ .+||+|||||++....... ..+ . ....+.++++..+. ..++
T Consensus 413 a---------~d~----~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss---~~Dl 474 (559)
T PRK12727 413 A---------DSA----ESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH---FSDL 474 (559)
T ss_pred c---------CcH----HHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC---hhHH
Confidence 0 011 1233333333 5799999999985432111 000 0 11234444444443 4445
Q ss_pred HHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 194 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
...++.+... ...++|+|+++...+. +..-.+....+.++.+
T Consensus 475 ~eii~~f~~~--~~~gvILTKlDEt~~l--------G~aLsv~~~~~LPI~y 516 (559)
T PRK12727 475 DEVVRRFAHA--KPQGVVLTKLDETGRF--------GSALSVVVDHQMPITW 516 (559)
T ss_pred HHHHHHHHhh--CCeEEEEecCcCccch--------hHHHHHHHHhCCCEEE
Confidence 5556666554 4578999997554322 3445555566766443
No 94
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.99 E-value=4.5e-09 Score=103.40 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+++|+|+ +.+||||||++++||..++ +.|++|++||+|+|...... .+.... ...++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~e------qL~~~a---------~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVE------QLKTYA---------KIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHH------HHHHHH---------HHhCCceEcc
Confidence 5688888 5699999999999999998 46899999999998532210 000000 0112222211
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh--h-hhhhhcC-C---CeEEEEeCCChhhHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVVP-L---TAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~--~-~~~~~~a-~---d~viiv~~p~~~s~~~~~ 194 (398)
. ........++.+ ..||+|||||++...... . ....+.. + ..+++|+.+. ....++.
T Consensus 285 ~---------~~~~l~~~l~~~------~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPKELAKALEQL------RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred C---------CHHhHHHHHHHh------CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 0 111222233332 579999999997543211 0 1111111 1 2334444433 3445666
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+++.+...++ -++|+++++..... +.+-.+....+.|+.+
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~~~--------G~i~~~~~~~~lPv~y 389 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETSSL--------GSILSLLIESGLPISY 389 (424)
T ss_pred HHHHHhCCCCC--CEEEEecccccccc--------cHHHHHHHHHCCCEEE
Confidence 66677766554 58899986543322 3455666677776543
No 95
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.3e-08 Score=97.08 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=104.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
+.+|.++ +=-|.||||+|.-||.+|.++|++|++|-+|.+-+..-.-|. .....-++++.+.+
T Consensus 100 P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~---------------~La~q~~v~~f~~~- 162 (451)
T COG0541 100 PTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK---------------QLAEQVGVPFFGSG- 162 (451)
T ss_pred CeEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHH---------------HHHHHcCCceecCC-
Confidence 4567766 555789999999999999999999999999998765321100 00011244444421
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHHHH
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 197 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~ 197 (398)
.+.....+.++.++..+...||+|||||.+.+.... ...-....-|.+++|++... -.++....
T Consensus 163 --------~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~--GQdA~~~A 232 (451)
T COG0541 163 --------TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI--GQDAVNTA 232 (451)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc--chHHHHHH
Confidence 111223345666665555789999999998765321 11111223478888887532 23344444
Q ss_pred HHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 198 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 198 ~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
+.+.+ .+++.|+|+++.+-+.++. ..-.+....|.|+-+
T Consensus 233 ~aF~e-~l~itGvIlTKlDGdaRGG--------aALS~~~~tg~PIkF 271 (451)
T COG0541 233 KAFNE-ALGITGVILTKLDGDARGG--------AALSARAITGKPIKF 271 (451)
T ss_pred HHHhh-hcCCceEEEEcccCCCcch--------HHHhhHHHHCCCeEE
Confidence 44433 4567899999987777663 566677777877543
No 96
>PRK14974 cell division protein FtsY; Provisional
Probab=98.94 E-value=2.2e-08 Score=95.11 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|.|. +..|+||||++.+||..|.+.|++|++++.|.+.......+. .....-|+.+++..
T Consensus 139 ~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~---------------~~a~~lgv~v~~~~ 202 (336)
T PRK14974 139 KPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE---------------EHAERLGVKVIKHK 202 (336)
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH---------------HHHHHcCCceeccc
Confidence 36788877 699999999999999999999999999999986432211000 00011233333321
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--hhhhhh----hhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLTLC----QVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--~~~~~~----~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
.. ......+...++......||+|||||++.... ..+..+ ....-+.+++|+.... . .+....
T Consensus 203 ~g---------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g-~d~~~~ 271 (336)
T PRK14974 203 YG---------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-G-NDAVEQ 271 (336)
T ss_pred CC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-c-hhHHHH
Confidence 11 11122233333332236799999999986642 111111 1123477788877643 2 233333
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
.+.+.. ....-++|+|+.+...+. +..-.+....+.|+.+
T Consensus 272 a~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~ 311 (336)
T PRK14974 272 AREFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILF 311 (336)
T ss_pred HHHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEE
Confidence 333322 234578999997665544 3455555666776554
No 97
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.91 E-value=4.7e-08 Score=86.85 Aligned_cols=201 Identities=16% Similarity=0.100 Sum_probs=116.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
||+.+.|.+.--|||||.+|..|+.+|..+|++|...-.=-.|..-... ..+..... ............+...+..+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~-~~D~~~l~--~~~~~~~~~~~~~py~f~~P 77 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAE-NSDALVLQ--RLSGLDLSYELINPYRFKEP 77 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCC-CchHHHHH--HhcCCCcccccccceecCCC
Confidence 7899999999999999999999999999999999875321111110000 00000000 00000000011122222211
Q ss_pred cCCCccccc-CCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh-----hhhhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 123 FSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~-----~~~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
.+..-.... ........+..-+..+. ..||+|||-..+|+-... ..-....-..-+|+|+....-++..+.-.
T Consensus 78 ~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt 156 (223)
T COG0132 78 LSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLT 156 (223)
T ss_pred CCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHH
Confidence 111111000 11111223333333333 699999999999885221 11111112246899999999999999999
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 253 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i 253 (398)
++.++..+++..|+|.|......... ......+.+..+.+..+.+|+-+..
T Consensus 157 ~eal~~~gl~l~G~I~n~~~~~~~~~------~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 157 VEALRARGLPLAGWVANGINPELDHY------AEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHCCCCEEEEEEccCCCchhHH------HHHHHHHHHhcCCCccccccCCccc
Confidence 99999999999999999854433211 1223357778888889999985543
No 98
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.86 E-value=3.5e-08 Score=103.17 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
|+|.|.|.+...|+|||+++..|+..|.++|+||..+--..+++.. ..... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~~~~~----------------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------MSEVE----------------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------HHHHH----------------HHHhcc
Confidence 6788999999999999999999999999999999998733332100 00000 000000
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCChhhHHHHH--
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVA-- 194 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~a~d~viiv~~p~~~s~~~~~-- 194 (398)
..+.....+...+..+. ..||+||||++.+.+.... ..+.. -...+++|+.++..++.++.
T Consensus 58 ---------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~-L~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ---------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKN-LGAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ---------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHH-hCCCEEEEECCCCCChHHHHHH
Confidence 00111122233333343 7899999999876653211 11111 13678999999887765433
Q ss_pred --HHHHHHh-ccCCCeeEEEEccccccCCCceecccCCChHHH-----------------HHHHhCCCeEEecCCChhhh
Q 015892 195 --KGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQ-----------------VVQQFGIPHLFDLPIRPTLS 254 (398)
Q Consensus 195 --~~~~~l~-~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~g~~~~~~ip~~~~i~ 254 (398)
...+.+. ..+.+..|+|+|+++...... ...... .....+.++++.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQ------GRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHH------HHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 3334444 446889999999943222100 011111 12334777899999998654
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.84 E-value=6.6e-08 Score=85.28 Aligned_cols=165 Identities=18% Similarity=0.198 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
+++|+++ +-.||||||+++-||..+..+|++|.+|-+|.+...... .+. .....-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~e------QL~---------~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVE------QLK---------TYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHH------HHH---------HHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHH------HHH---------HHHHHhccccchhhc
Confidence 4788988 555899999999999999988999999999987532111 000 001112444443211
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHHHH
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 197 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~ 197 (398)
.......+.+.++....++||+|||||++...... ........-+.+++|+.++... .++....
T Consensus 65 ---------~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~~~~~ 134 (196)
T PF00448_consen 65 ---------ESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDLEQAL 134 (196)
T ss_dssp ---------TSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHHHHHH
T ss_pred ---------chhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHHHHHH
Confidence 11222344444444334789999999987443211 1112223456778887776543 4555555
Q ss_pred HHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE
Q 015892 198 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 244 (398)
Q Consensus 198 ~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 244 (398)
+....+++ -++|+++.+...+. +.+-.+....+.|+.
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~ 171 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPIS 171 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEE
T ss_pred HHhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeE
Confidence 55555555 48899996554433 345666677777643
No 100
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.83 E-value=6.1e-08 Score=93.81 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEE
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKL 118 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~v 118 (398)
.+++|.++ ++.||||||+++.||..+.. +|++|++|++|++.......+..-. ..-|+.+
T Consensus 173 ~~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a---------------~~lgvpv 236 (388)
T PRK12723 173 KKRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYG---------------DIMGIPV 236 (388)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHh---------------hcCCcce
Confidence 35677776 77899999999999999873 5899999999997544322111000 0011211
Q ss_pred EecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh------hhhhhcCCC-eEEEEeCCChhhHH
Q 015892 119 VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLT-AAVIVTTPQKLAFI 191 (398)
Q Consensus 119 lp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~a~d-~viiv~~p~~~s~~ 191 (398)
.... . ...+...+... ..||+|||||++....... ........+ ..++|+.++.. -.
T Consensus 237 ~~~~------------~-~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~ 300 (388)
T PRK12723 237 KAIE------------S-FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TS 300 (388)
T ss_pred EeeC------------c-HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HH
Confidence 1100 0 11233333332 6899999999976542211 111111112 57777777653 34
Q ss_pred HHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 192 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
++.+.++.+..+ ..-++|+++.+..... +.+-.+....+.|+.+
T Consensus 301 ~~~~~~~~~~~~--~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~y 344 (388)
T PRK12723 301 DVKEIFHQFSPF--SYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSY 344 (388)
T ss_pred HHHHHHHHhcCC--CCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEE
Confidence 455555555443 4568999996654433 3566677777776543
No 101
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.80 E-value=4.1e-08 Score=87.12 Aligned_cols=188 Identities=18% Similarity=0.217 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccccccc-CCCCCceeeeccCCeEEEeccc
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
|.|-|++.-.|||||+++..|+.+|.++|.||..+=-=.++... +.+...... ..... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~----d~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED----DEDAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC----SSHHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC----CchHHHHHHHhCCCc---ccccccccccCccc
Confidence 56889999999999999999999999999999865332111110 000000000 00000 00000000111000
Q ss_pred CCCcccccCCccHHHHHHHH-HhhccCCCCcEEEEcCCCCCChh------hhhhhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 124 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~VIID~pp~~~~~------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
...-.....+ ....+.++ ...+. +.+|++||+...+.... ....+.... ..+++|+.....++..+...
T Consensus 74 ~~~~~~~~~~--~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 SPHLAAELEG--VDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp -HHHHHHHHT------HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred CHHHHhhccC--CcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0000000000 00113333 24443 79999999998876531 111111222 35788888888899999999
Q ss_pred HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh
Q 015892 197 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 254 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~ 254 (398)
++.++..+.++.|+|+|++... +..+.+.+..+.++++.||+++.+.
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999998999999999995322 3688899999999999999998764
No 102
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.80 E-value=1e-07 Score=95.37 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=102.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCccc---CCcc---cccc----cCCCCCceeeecc--C
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV---SPEN---RLLE----MNPEKRTIIPTEY--L 114 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l---~~~~---~~~~----~~~~~~~i~~~~~--~ 114 (398)
|.|++...+||||++++.|+..|.++|++|..+- ||+-++.... +.+. .... .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fK--p~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~ 78 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFK--SQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPK 78 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEC--CcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcC
Confidence 4578889999999999999999999999998654 4421111111 1110 0000 0000111111110 0
Q ss_pred ---CeEEEecccCC--Ccc---cccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh--------hhhhhhhcCCCe
Q 015892 115 ---GVKLVSFGFSG--QGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTA 178 (398)
Q Consensus 115 ---~l~vlp~~~~~--~~~---~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~--------~~~~~~~~a~d~ 178 (398)
...++-.+... ... ...........+.+.+..+. ..||+||||+++|+... ....+....++
T Consensus 79 ~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap- 156 (475)
T TIGR00313 79 GNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD- 156 (475)
T ss_pred CCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-
Confidence 01111111100 000 00010122333444444443 68999999999876541 12222233344
Q ss_pred EEEEeCCChhhH-HHHHHHHHHHhcc-CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015892 179 AVIVTTPQKLAF-IDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 179 viiv~~p~~~s~-~~~~~~~~~l~~~-~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
+++|+.....+. ..+..+++.+... +..+.|+|+|++..+. ...++..+.+++..|.++++.+|+++
T Consensus 157 VILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 157 AILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred EEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 566677666533 3444455554443 2568899999975421 11224556667777999999988864
No 103
>PRK00784 cobyric acid synthase; Provisional
Probab=98.80 E-value=1.2e-07 Score=95.57 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=103.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc------ccccc----cCCCCCceeeec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE------NRLLE----MNPEKRTIIPTE 112 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~------~~~~~----~~~~~~~i~~~~ 112 (398)
||+.|.|++...|||||++++.|+..|+++|++|..+ -|++.+.....+.+ ..... .......+
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~--Kpv~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i---- 74 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPF--KAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDM---- 74 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc--cchhccccceECCCCCeeHHHHHHHHHhCCCCchhcc----
Confidence 6788999999999999999999999999999999876 34321111111100 00000 00000011
Q ss_pred cCCeEEEecccCCC------------ccc--ccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh--------hhhhh
Q 015892 113 YLGVKLVSFGFSGQ------------GRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--------IQLTL 170 (398)
Q Consensus 113 ~~~l~vlp~~~~~~------------~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~--------~~~~~ 170 (398)
+-+.+-|...... +.. ..........+.+.+..+. +.||++||+...|+-. .....
T Consensus 75 -~P~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dl 152 (488)
T PRK00784 75 -NPVLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGF 152 (488)
T ss_pred -CCEEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHH
Confidence 1111111111000 000 0001122223333333343 7899999997744331 01121
Q ss_pred hhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc-cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecC
Q 015892 171 CQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 248 (398)
Q Consensus 171 ~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~-~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip 248 (398)
+.... --+|+|+..... ++..+...++.+.. .+.++.|+|+|++..+. ...++..+.+++..+.++++.+|
T Consensus 153 ak~l~-~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~iP 225 (488)
T PRK00784 153 AEAAD-APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVLP 225 (488)
T ss_pred HHHcC-CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEcC
Confidence 11122 245667766544 35555544555553 34688999999975321 11123455577778999999999
Q ss_pred CChh
Q 015892 249 IRPT 252 (398)
Q Consensus 249 ~~~~ 252 (398)
+++.
T Consensus 226 ~~~~ 229 (488)
T PRK00784 226 YLDD 229 (488)
T ss_pred CCcC
Confidence 8754
No 104
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.76 E-value=2.3e-07 Score=87.94 Aligned_cols=151 Identities=14% Similarity=0.099 Sum_probs=90.2
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc-ccCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
..+.+|.|. +-.|+||||++..|+..|..+|++|.+|..||+.+.+.. ++|-...... ....+++.+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 456788988 557999999999999999999999999999997653321 2221111110 01223333333
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeC-CChhhHHHHHH-HHH
Q 015892 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAK-GVR 198 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~-p~~~s~~~~~~-~~~ 198 (398)
.+... .. ......+.+.+..+....||+|||||++-.... ... ...+|.+++|+. +...++...+. .++
T Consensus 124 ~~~~~----~l--~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~i--~~~aD~vlvv~~p~~gd~iq~~k~gi~E 194 (332)
T PRK09435 124 SPSSG----TL--GGVARKTRETMLLCEAAGYDVILVETVGVGQSE-TAV--AGMVDFFLLLQLPGAGDELQGIKKGIME 194 (332)
T ss_pred cCCcc----cc--cchHHHHHHHHHHHhccCCCEEEEECCCCccch-hHH--HHhCCEEEEEecCCchHHHHHHHhhhhh
Confidence 21100 00 112334444444444478999999998844332 223 346799999986 55556655544 222
Q ss_pred HHhccCCCeeEEEEcccccc
Q 015892 199 MFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 199 ~l~~~~~~~~~vV~N~~~~~ 218 (398)
.. + .+|+|+.+..
T Consensus 195 ~a---D----IiVVNKaDl~ 207 (332)
T PRK09435 195 LA---D----LIVINKADGD 207 (332)
T ss_pred hh---h----eEEeehhccc
Confidence 22 1 4788997643
No 105
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.73 E-value=3.8e-07 Score=90.12 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeE----------EecCCChhhhhc
Q 015892 187 KLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL----------FDLPIRPTLSAS 256 (398)
Q Consensus 187 ~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~~ip~~~~i~~a 256 (398)
..++.++.+.++.++.++++. .|.+|+...+...+ .+.+++++++.|.+.+ +.+|+++.+.++
T Consensus 355 ~sGl~NL~RHIenvr~FGvPv-VVAINKFd~DTe~E------i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA 427 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPV-VVAINKFVTDTDAE------IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVEL 427 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCE-EEEEeCCCCCCHHH------HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHH
Confidence 335668888899999999985 56679966555321 1467888888999988 889999998888
Q ss_pred ccCCCc--eEeeCCCCHHHHHHHHHHHHHH
Q 015892 257 GDSGMP--EVAADPCGEVANTFQDLGVCVV 284 (398)
Q Consensus 257 ~~~g~~--v~~~~~~s~~~~~~~~la~~i~ 284 (398)
...+.+ -..|..+.++.+.++.+|++|-
T Consensus 428 ~~~~~s~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 428 IEEGESNFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred HhcCCCCCceecCCCCcHHHHHHHHHHHcc
Confidence 876554 1235556788899999998864
No 106
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.62 E-value=8.6e-07 Score=88.33 Aligned_cols=198 Identities=19% Similarity=0.155 Sum_probs=105.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 126 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~~ 126 (398)
|.|++...||||||+++.|+.+|+++|++|...-.-+.. . +..+..... .....+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~------~--D~~~~~~~~------g~~~~~ld~-------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY------I--DPMFHTQAT------GRPSRNLDS-------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC------C--CHHHHHHHh------CCchhhCCc--------
Confidence 678889999999999999999999999999988642210 0 101000000 000001110
Q ss_pred cccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCCh---------hhhhhhhhcCCCeEEEEeCCChhhHHHHHHHH
Q 015892 127 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 197 (398)
Q Consensus 127 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~---------~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~ 197 (398)
... . ...+.+.+..+. ..+|++||....|+-+ .....+.... .-+|+|+..... ...+..+.
T Consensus 60 --~~~---~-~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~-~~t~~al~ 130 (449)
T TIGR00379 60 --FFM---S-EAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRL-SRSAAAIV 130 (449)
T ss_pred --ccC---C-HHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchH-HHHHHHHH
Confidence 001 1 233444444443 6899999998855521 1222222222 245666665421 12222222
Q ss_pred HHH--hccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhhh-hcccC-CCceEeeCCCCHHH
Q 015892 198 RMF--SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDS-GMPEVAADPCGEVA 273 (398)
Q Consensus 198 ~~l--~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i~-~a~~~-g~~v~~~~~~s~~~ 273 (398)
..+ ...++++.|+|+|++..... .....+.+++..+.++++.+|+++.+. ..... ..|..+ .....
T Consensus 131 ~~~~~~~~~i~i~GvIlN~v~~~~~-------~~~~~~~i~~~~gipvLG~IP~~~~l~~p~rhLgLv~~~e---~~~~~ 200 (449)
T TIGR00379 131 LGYRSFDPGVKLKGVILNRVGSERH-------LEKLKIAVEPLRGIPILGVIPRQQDLKVPDRHLGLVPAGE---REIIQ 200 (449)
T ss_pred HHHHhhCCCCCEEEEEEECCCCHHH-------HHHHHHHHHHhCCCCEEEEecCccccCCCCcccCCCChhh---hhhHH
Confidence 112 12377889999999753211 112345556667899999999998654 21111 223333 23344
Q ss_pred HHHHHHHHHHHH
Q 015892 274 NTFQDLGVCVVQ 285 (398)
Q Consensus 274 ~~~~~la~~i~~ 285 (398)
..+..+++.+.+
T Consensus 201 ~~~~~~~~~~~~ 212 (449)
T TIGR00379 201 QIFDWLAEVVEK 212 (449)
T ss_pred HHHHHHHHHHHh
Confidence 556666665544
No 107
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=3.4e-07 Score=94.87 Aligned_cols=162 Identities=14% Similarity=0.162 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCC-CcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+++|+|+ +-.||||||+...||..+. .+| ++|.+++.|.+...... .+... ....++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~e------QL~~~---------a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALE------QLRIY---------GRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHH------HHHHH---------HHhCCCCcccc
Confidence 5789988 7789999999999999886 566 69999999986532211 00000 00011111110
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCC---hhhhhhh---hhcCCCeEEEEeCCChhhHHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQLTLC---QVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~---~~~~~~~---~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
... ..+...+..+ .+||+|||||++-.. ....... ....-+.+++|+.... ...++..
T Consensus 249 ---------~~~----~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 ---------KDA----ADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ---------CCH----HHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 011 1234444433 688999999998332 1111111 1112356778877663 3445566
Q ss_pred HHHHHhcc-CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 196 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 196 ~~~~l~~~-~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
+++.+... ..++-++|+++.+...+. +.+-.+....+.|+.+
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~--------G~iL~i~~~~~lPI~y 355 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL--------GPALDTVIRHRLPVHY 355 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc--------cHHHHHHHHHCCCeEE
Confidence 66666553 345679999997655433 3566667777776544
No 108
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.59 E-value=8.6e-08 Score=89.62 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHC-C-CcEEEEEecCCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 86 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G-~rVllIDlD~q~~ 86 (398)
.+++|+|+ +.+||||||+++.||..++.+ | ++|.+|++|++..
T Consensus 193 ~~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46789988 568999999999999999976 5 9999999999763
No 109
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.59 E-value=1.3e-06 Score=80.51 Aligned_cols=163 Identities=15% Similarity=0.197 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCC-CCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS-LPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~-~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.+.+|+|. +++|+||||+...||..+..+|.+|.++++|++... ...+- .. ....++.+...
T Consensus 74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~-------~~---------~~~~~~~~~~~ 136 (270)
T PRK06731 74 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ-------DY---------VKTIGFEVIAV 136 (270)
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-------HH---------hhhcCceEEec
Confidence 34688887 669999999999999999988999999999987421 11110 00 00012333221
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhcc-CCCCcEEEEcCCCCCC--hhhh-hh---hhhcCCCeEEEEeCCChhhHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTG--DIQL-TL---CQVVPLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIID~pp~~~--~~~~-~~---~~~~a~d~viiv~~p~~~s~~~~~ 194 (398)
. .. ..+...+..+. ...||+|||||++... ...+ .. .....-+.+++|+.++.. -.++.
T Consensus 137 ~---------~~----~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~ 202 (270)
T PRK06731 137 R---------DE----AAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMI 202 (270)
T ss_pred C---------CH----HHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHH
Confidence 0 11 11233333221 1479999999998763 2111 11 112233566777776532 23444
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
..++.+.. ...-++|+++.+...+. +.+-.+....+.|+.+.
T Consensus 203 ~~~~~f~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 203 EIITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 244 (270)
T ss_pred HHHHHhCC--CCCCEEEEEeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 55566655 45568999996654433 35666777778775543
No 110
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.54 E-value=1.5e-06 Score=83.54 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH-CC-CcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G-~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
.+.+++|+ +..||||||++..||..+.. .| .+|.+|..|.+...... .+... ...-|+.+..
T Consensus 136 ~g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E------qL~~~---------a~~~gv~~~~ 199 (374)
T PRK14722 136 RGGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE------QLRIF---------GKILGVPVHA 199 (374)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH------HHHHH---------HHHcCCceEe
Confidence 35688877 77899999999999998874 56 69999999997432110 00000 0001222211
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCC--hhhhhh-hhhc---CCCeEEEEeCCChhhHHHHH
Q 015892 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLTL-CQVV---PLTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~--~~~~~~-~~~~---a~d~viiv~~p~~~s~~~~~ 194 (398)
. .........+.++ .++|+|||||++... ...... ..+. .....++|+.+.. ....+.
T Consensus 200 ~---------~~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~ 263 (374)
T PRK14722 200 V---------KDGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLN 263 (374)
T ss_pred c---------CCcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHH
Confidence 1 0111222333333 678999999997442 111111 1111 2244567776654 334444
Q ss_pred HHHHHHhccC-------CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 195 KGVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 195 ~~~~~l~~~~-------~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
..++.+.... .+.-++|+++.+...+. +.+-.+....+.|+.+
T Consensus 264 evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~y 313 (374)
T PRK14722 264 EVVQAYRSAAGQPKAALPDLAGCILTKLDEASNL--------GGVLDTVIRYKLPVHY 313 (374)
T ss_pred HHHHHHHHhhcccccccCCCCEEEEeccccCCCc--------cHHHHHHHHHCcCeEE
Confidence 5555554432 13578999996654433 3555666666766543
No 111
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.44 E-value=8.4e-06 Score=74.56 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=94.0
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-cccCCcccccccCCCCCceeeeccCCeEEE
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLV 119 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 119 (398)
...+.+|+++ +-+|+||||+.-.|...|.++|+||.+|-.||..+-+- .+||..-.+.. ....+|+.+-
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~---------~~~~~~vFiR 117 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQR---------LAVDPGVFIR 117 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHh---------hccCCCeEEe
Confidence 3457899998 77899999999999999999999999999999654332 12332211111 1124677777
Q ss_pred ecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh-HHHHHHHHH
Q 015892 120 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVR 198 (398)
Q Consensus 120 p~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s-~~~~~~~~~ 198 (398)
|.+....- ..++....+.+..+....||+|||.|-+ .+..-... ...+|.+++++.|..-. +...+.-+-
T Consensus 118 s~~srG~l------GGlS~at~~~i~~ldAaG~DvIIVETVG-vGQsev~I--~~~aDt~~~v~~pg~GD~~Q~iK~Gim 188 (323)
T COG1703 118 SSPSRGTL------GGLSRATREAIKLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFLVVMIPGAGDDLQGIKAGIM 188 (323)
T ss_pred ecCCCccc------hhhhHHHHHHHHHHHhcCCCEEEEEecC-CCcchhHH--hhhcceEEEEecCCCCcHHHHHHhhhh
Confidence 64432211 1223344444444444799999999965 34333333 33569999999996543 333333322
Q ss_pred HHhccCCCeeEEEEcccc
Q 015892 199 MFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 199 ~l~~~~~~~~~vV~N~~~ 216 (398)
.+.. -+|+|+.+
T Consensus 189 EiaD------i~vINKaD 200 (323)
T COG1703 189 EIAD------IIVINKAD 200 (323)
T ss_pred hhhh------eeeEeccC
Confidence 2221 36789954
No 112
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.39 E-value=6.5e-07 Score=83.15 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=100.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
+.+.||.|+ +=-||||||+..-||..|.++|++|++.=+|......- ...-.+...-|+++|..
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi---------------EQL~~w~er~gv~vI~~ 200 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI---------------EQLEVWGERLGVPVISG 200 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH---------------HHHHHHHHHhCCeEEcc
Confidence 457889888 56699999999999999999999999999888532110 00001112257777764
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhc------------CCCeEEEEeCCChhh
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------------PLTAAVIVTTPQKLA 189 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~------------a~d~viiv~~p~~~s 189 (398)
.. . .+.....-..++....+.||+|||||.+.+..-.--+..+. +-+.++++.+...-
T Consensus 201 ~~-G--------~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG- 270 (340)
T COG0552 201 KE-G--------ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG- 270 (340)
T ss_pred CC-C--------CCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC-
Confidence 21 1 12222333333333348999999999987754221111111 12346666554321
Q ss_pred HHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 190 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
.+.....+.+.+ -.++-|+|+++++...++. .+-.+...++.|+.+.
T Consensus 271 -qnal~QAk~F~e-av~l~GiIlTKlDgtAKGG--------~il~I~~~l~~PI~fi 317 (340)
T COG0552 271 -QNALSQAKIFNE-AVGLDGIILTKLDGTAKGG--------IILSIAYELGIPIKFI 317 (340)
T ss_pred -hhHHHHHHHHHH-hcCCceEEEEecccCCCcc--------eeeeHHHHhCCCEEEE
Confidence 112222233332 2345799999987666664 4567888888886543
No 113
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.39 E-value=3.3e-06 Score=83.82 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCC-CcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G-~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
++||+|+ +--||||||++..||..+. ++| ++|.+|+.|++..... ..+... ...-|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~------EQLr~~---------AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH------EQLRIY---------GKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH------HHHHHH---------HHHhCCCeecc
Confidence 5799998 6679999999999999986 556 5999999999642210 000000 00011111100
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh---hhhhh-hcC---CCeEEEEeCCChhhHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQ-VVP---LTAAVIVTTPQKLAFIDVA 194 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~---~~~~~-~~a---~d~viiv~~p~~~s~~~~~ 194 (398)
. ... .....+ ..+ .++|+++|||++ .+... ..... +.. -...++|+.... ....+.
T Consensus 320 ~---------~~~---Dl~~aL-~~L--~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~-~~~~l~ 382 (484)
T PRK06995 320 K---------DAA---DLRLAL-SEL--RNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS-HGDTLN 382 (484)
T ss_pred C---------Cch---hHHHHH-Hhc--cCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCC-cHHHHH
Confidence 0 000 111122 122 678999999965 33211 11111 111 123455555433 334555
Q ss_pred HHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 195 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 195 ~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
+.++.+...+ ..++|+|+.+...+. +.+-.+...++.|+.+
T Consensus 383 ~i~~~f~~~~--~~g~IlTKlDet~~~--------G~~l~i~~~~~lPI~y 423 (484)
T PRK06995 383 EVVQAYRGPG--LAGCILTKLDEAASL--------GGALDVVIRYKLPLHY 423 (484)
T ss_pred HHHHHhccCC--CCEEEEeCCCCcccc--------hHHHHHHHHHCCCeEE
Confidence 5555555544 468899997655433 3566677777776543
No 114
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.36 E-value=6.5e-06 Score=79.01 Aligned_cols=170 Identities=21% Similarity=0.233 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 125 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~~ 125 (398)
.|.+.+...|+||||+|..|..+|+++|++|--.-.-|. ++++... ..+.-...-|||
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPD------YIDP~~H--------~~atG~~srNLD-------- 59 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPD------YIDPGYH--------TAATGRPSRNLD-------- 59 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCC------ccCchhh--------hHhhCCccCCCc--------
Confidence 467788999999999999999999999988844333221 1111100 000000011222
Q ss_pred CcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh---------hhhhhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 126 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 126 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~---------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
..++.. ..++.+...-. ++.|+.||..--|+-+. +...+.+.. --||+|++....|-. +..+
T Consensus 60 --~~mm~~----~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S-~AAi 130 (451)
T COG1797 60 --SWMMGE----EGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRS-VAAI 130 (451)
T ss_pred --hhhcCH----HHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHH-HHHH
Confidence 122222 23444444332 67888888654443222 111111111 247888888776643 3333
Q ss_pred HHHHhcc--CCCeeEEEEccccccCCCceecccCCChHHHHHHH-hCCCeEEecCCChhhh
Q 015892 197 VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTLS 254 (398)
Q Consensus 197 ~~~l~~~--~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~ip~~~~i~ 254 (398)
+.=++.+ ++++.|||+|++.... + .+...+..+. .|+++++.+|.++.+.
T Consensus 131 v~G~~~fdp~v~iaGVIlNrVgser----H----~~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 131 VKGFKHFDPDVNIAGVILNRVGSER----H----YELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHhcCCCCceEEEEEecCCCHH----H----HHHHHHHhhhcCCCcEEEEecCCcccC
Confidence 4444444 4668999999975332 1 1344444444 6899999999988643
No 115
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.25 E-value=5.3e-06 Score=74.81 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC-cccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.+.+|+|+ +-+|+||||+.-.|+..+.++|+||.++-.||..+-+- .+||..-.+.. ....+|+++-|.
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~---------~~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQE---------LSRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHH---------HHTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcC---------cCCCCCEEEeec
Confidence 57899997 77899999999999999999999999999999654332 23443222211 122467777664
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 188 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~ 188 (398)
.....- ..+.......+..+..-.||+|||-|-+ .+..-... ...+|.+++++.|..-
T Consensus 98 atRG~l------GGls~~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I--~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 98 ATRGSL------GGLSRATRDAVRLLDAAGFDVIIIETVG-VGQSEVDI--ADMADTVVLVLVPGLG 155 (266)
T ss_dssp ---SSH------HHHHHHHHHHHHHHHHTT-SEEEEEEES-SSTHHHHH--HTTSSEEEEEEESSTC
T ss_pred CcCCCC------CCccHhHHHHHHHHHHcCCCEEEEeCCC-CCccHHHH--HHhcCeEEEEecCCCc
Confidence 322110 1122334444444434689999999975 44433444 3466999999999654
No 116
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.13 E-value=0.00011 Score=73.28 Aligned_cols=169 Identities=14% Similarity=0.062 Sum_probs=96.2
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEE
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 119 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 119 (398)
++..|+.|.|++...|+||||+|+.|+.+|.++ |...-..|.. .+ + .+..+.+
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~-------------id-------~----~p~~~~~ 286 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDV-------------RD-------I----VPSLYLL 286 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCCh-------------hh-------c----CCcceec
Confidence 344577899999999999999999999999975 5444422100 00 0 0111111
Q ss_pred ecccCCCcccc--cCC-ccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh---------hhhhhcCCCeEEEEeCCCh
Q 015892 120 SFGFSGQGRAI--MRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---------TLCQVVPLTAAVIVTTPQK 187 (398)
Q Consensus 120 p~~~~~~~~~~--~~~-~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~---------~~~~~~a~d~viiv~~p~~ 187 (398)
+...+...+.. ... ......++.+ ....+|++||....|+-+... ..+.... --+++|+....
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~----~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~ 361 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFV----KNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSK 361 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHH----HhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCC
Confidence 10000000000 000 1122333332 113689999999877655311 1111111 35788888888
Q ss_pred hhHHHHHHH----HHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecC
Q 015892 188 LAFIDVAKG----VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 248 (398)
Q Consensus 188 ~s~~~~~~~----~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip 248 (398)
.++..+... .+.++..++++.|+|+|++.... +.+....+.+..|+|+++.+|
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~--------~~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME--------IFEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH--------HHHHHHHHHHhcCCCEEEecc
Confidence 776554443 34555668889999999975211 124456667778999998844
No 117
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.1e-05 Score=72.98 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=87.7
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
..+.||.|++. -|+||||++.-||+++.++|++|++|=+|........-+... ....++.+..+
T Consensus 99 ~kpsVimfVGL-qG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqn---------------A~k~~iP~ygs 162 (483)
T KOG0780|consen 99 GKPSVIMFVGL-QGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQN---------------ATKARVPFYGS 162 (483)
T ss_pred CCCcEEEEEec-cCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHH---------------hHhhCCeeEec
Confidence 34678888855 477999999999999999999999999998654322111100 00112222221
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
. ...+...+..+-.+..+++.||+||+||++...... ........=|.+|+|++.+.-- .+..
T Consensus 163 y---------te~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ--aae~ 231 (483)
T KOG0780|consen 163 Y---------TEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ--AAEA 231 (483)
T ss_pred c---------cccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH--hHHH
Confidence 1 111222333444444446899999999998664321 1111112237888898865432 1122
Q ss_pred HHHHHhccCCCeeEEEEccccccCCCc
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDADGK 222 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~~~~ 222 (398)
..+.+.. .+.+-++|+++.+-..++.
T Consensus 232 Qa~aFk~-~vdvg~vIlTKlDGhakGG 257 (483)
T KOG0780|consen 232 QARAFKE-TVDVGAVILTKLDGHAKGG 257 (483)
T ss_pred HHHHHHH-hhccceEEEEecccCCCCC
Confidence 2222221 3456788889876655543
No 118
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.99 E-value=0.00012 Score=70.31 Aligned_cols=142 Identities=17% Similarity=0.213 Sum_probs=79.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH--HCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 121 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La--~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~ 121 (398)
.++|+++ +--||||||+-+-||+.++ ...+||.+|-+|..--. ....+...... =|+.+.-.
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG------A~EQLk~Ya~i---------m~vp~~vv 266 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG------AVEQLKTYADI---------MGVPLEVV 266 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh------HHHHHHHHHHH---------hCCceEEe
Confidence 7899998 5669999999999999999 45689999999986422 11111100000 01111110
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhh------hhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~------~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
....+ +...+..+ .+||+|+|||.+.-..... ..........+.+|+..+ ....+++.
T Consensus 267 ---------~~~~e----l~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dlke 330 (407)
T COG1419 267 ---------YSPKE----LAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDLKE 330 (407)
T ss_pred ---------cCHHH----HHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHHHH
Confidence 11122 33333333 7899999999763211111 111111123344444443 34456777
Q ss_pred HHHHHhccCCCeeEEEEccccccC
Q 015892 196 GVRMFSKLKVPCIAVVENMCHFDA 219 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~~~ 219 (398)
.++.+..+++ -++|+++.+...
T Consensus 331 i~~~f~~~~i--~~~I~TKlDET~ 352 (407)
T COG1419 331 IIKQFSLFPI--DGLIFTKLDETT 352 (407)
T ss_pred HHHHhccCCc--ceeEEEcccccC
Confidence 7777766655 588989854433
No 119
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=6e-05 Score=72.83 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=96.1
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCc-ccccccCCCCCceeeeccCC
Q 015892 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLG 115 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~-~~~~~~~~~~~~i~~~~~~~ 115 (398)
..+-.+.+.+|+|+ +=-||||||--+-+|++|-+.++||++.-||+..+..---|+.. ..+..... .-
T Consensus 371 sar~~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~----------~~ 439 (587)
T KOG0781|consen 371 SARRRKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHG----------TM 439 (587)
T ss_pred HHHhcCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhcc----------ch
Confidence 33444578999999 66799999999999999999999999999999754321111100 00100000 00
Q ss_pred eEEEecccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh---hhh---hhhcCCCeEEEEeCC--Ch
Q 015892 116 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTL---CQVVPLTAAVIVTTP--QK 187 (398)
Q Consensus 116 l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~---~~~---~~~~a~d~viiv~~p--~~ 187 (398)
+.+...+ .+.+...+.++++.......||+|+|||.+.+.+.. ..+ ..+..-|.++.|-+. ..
T Consensus 440 v~lfekG---------Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~ 510 (587)
T KOG0781|consen 440 VELFEKG---------YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN 510 (587)
T ss_pred hHHHhhh---------cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc
Confidence 1111111 223344566777766656899999999998775321 111 112345788888775 33
Q ss_pred hhHHHHHHHHHHHhccCCC--eeEEEEcccc
Q 015892 188 LAFIDVAKGVRMFSKLKVP--CIAVVENMCH 216 (398)
Q Consensus 188 ~s~~~~~~~~~~l~~~~~~--~~~vV~N~~~ 216 (398)
.|+..+...-+.+.....+ +-++++.+++
T Consensus 511 dsv~q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 511 DSVDQLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHHHHHHhcCCCccccceEEEEecc
Confidence 4555555555555544422 4688888743
No 120
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.93 E-value=0.00022 Score=70.31 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEeccc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 123 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~ 123 (398)
|+.|.|.+...|+||||++..|+.+|.++|.+|-.+-..|.. .++ ........ ....+++ |
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~------iD~--~~~~~~~g------~~~~nld--~--- 61 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDF------IDP--SHHEAVAG------RPSRTLD--P--- 61 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCC------CCH--HHHHHHhC------CCcccCC--h---
Confidence 346888999999999999999999999999999776653321 110 00000000 0001221 0
Q ss_pred CCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCChhhHH--HHHHHH
Q 015892 124 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI--DVAKGV 197 (398)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~----~~~~~~~a~d~viiv~~p~~~s~~--~~~~~~ 197 (398)
.... ...+++... +..+|++||....|+-+.. ...+.... --+|+|+.+...+.. .+...+
T Consensus 62 -----~~~~----~~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 62 -----WLSG----EDGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred -----hhCC----HHHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHH
Confidence 0011 122333322 2459999999987774321 11111111 247888887776433 333333
Q ss_pred HHHhc---cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCChhh
Q 015892 198 RMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 253 (398)
Q Consensus 198 ~~l~~---~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~~i 253 (398)
..+.. .++++.|+|+|++.... + .+.+.+..+. ++++++.+|..+.+
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~~~----h----~~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHGGR----H----ADGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCcHH----H----HHHHHHhhhh-cCceeEecccCCCC
Confidence 33333 37889999999964311 0 1122222222 67899999997754
No 121
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.90 E-value=9.3e-05 Score=68.80 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.|++.|+|||+...........+..+|.+++|+.++......+..+++.+...+.+.+ +++|+++..... .
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~------~ 133 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERAD------F 133 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCC------H
Confidence 467899999999865432222223557899999999987666667777777777787754 578997644321 1
Q ss_pred CChHHHHHHHhCCCeE-EecCCCh
Q 015892 229 RGSGSQVVQQFGIPHL-FDLPIRP 251 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~-~~ip~~~ 251 (398)
....+.+++.++.+.+ ..+|...
T Consensus 134 ~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 134 DKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHhCCCeEEEEecccC
Confidence 2456788888887655 4477644
No 122
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.89 E-value=0.00019 Score=60.76 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
||+|++|++.| ++||||+...|...|.++|+||.+|=-...+
T Consensus 1 m~~Il~ivG~k-~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGYK-NSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEecC-CCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 78999999777 6699999999999999999999999766654
No 123
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.83 E-value=0.00015 Score=69.30 Aligned_cols=44 Identities=36% Similarity=0.386 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 87 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~ 87 (398)
..-++.+++.+ ++||||+++-||-.+-.+|++|.+||+|+..+.
T Consensus 72 ~~~~vmvvG~v-DSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~e 115 (398)
T COG1341 72 KVGVVMVVGPV-DSGKSTLTTYLANKLLARGRKVAIIDADVGQSE 115 (398)
T ss_pred CCcEEEEECCc-CcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcc
Confidence 34577777676 789999999999999999999999999997654
No 124
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.80 E-value=8e-05 Score=66.97 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|.|++.+ |+||||++..|+..|.++|+||.+|..+.
T Consensus 1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFK-DSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 6799999886 99999999999999999999999997543
No 125
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.75 E-value=0.00026 Score=60.03 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
||+|.+.+ |+||||++..|+..|..+|+||.+|..|..
T Consensus 1 vi~i~G~~-gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIVGPK-NSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 46777555 999999999999999999999999998754
No 126
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.69 E-value=0.00065 Score=61.89 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.+.++|||+...........+..+|.+++|+.....-.......++.+...+.+.+ +++|+.+..... .
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~------~ 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD------L 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC------H
Confidence 367889999998754432222223556799999988765444456677777777788864 788997644311 1
Q ss_pred CChHHHHHHHhCCCeEEe-cC
Q 015892 229 RGSGSQVVQQFGIPHLFD-LP 248 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~~~-ip 248 (398)
...++++.+.++...+.. +|
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 257889999998765533 55
No 127
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.65 E-value=0.0039 Score=57.96 Aligned_cols=96 Identities=19% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.+.+||||+...........+..+|.+++|+.....--....+.++.+...+.+.+ +++|+.+......
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~~------ 133 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGADF------ 133 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCH------
Confidence 467889999998754433222223557799999998865444456677888888888875 6789976432111
Q ss_pred CChHHHHHHHhCCCeE-EecCCCh
Q 015892 229 RGSGSQVVQQFGIPHL-FDLPIRP 251 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~-~~ip~~~ 251 (398)
....+++.+.++...+ ..+|...
T Consensus 134 ~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 134 FRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHhCCCceEEEecccc
Confidence 1356788888875533 4467644
No 128
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.63 E-value=0.00069 Score=62.86 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
+..+.+.++|||+...........+..+|.+++|+.++..--.....+++.....+.++ .+++|+++..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~~~a~------~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDREGRD------P 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCccCCCC------H
Confidence 46788999999975432221222245679999999886533334556666666677774 5677997543321 1
Q ss_pred CChHHHHHHHhCCCeEE-ecCC
Q 015892 229 RGSGSQVVQQFGIPHLF-DLPI 249 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~~-~ip~ 249 (398)
....+++++.++.+.+. .+|.
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi 162 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 12467888889876553 3665
No 129
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.54 E-value=0.00079 Score=65.61 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=35.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|++|+|++.| |+||||+...|...|..+|+||.+|--|.
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 6799999877 99999999999999999999999976544
No 130
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.0023 Score=62.80 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=86.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHH-HC-CCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEe
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 120 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La-~~-G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp 120 (398)
.+.+|+++ +.-|+||||+..-||..+. .. +.+|.++=.|...-.... .+.. ....-|+.+..
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalE------QL~~---------~a~ilGvp~~~ 253 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHE------QLRI---------YGKLLGVSVRS 253 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHH------HHHH---------HHHHcCCceec
Confidence 46789988 7789999999999998665 33 368888877774321100 0000 00001222111
Q ss_pred cccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh----hhhhhhc---CCCeEEEEeCCChhhHHHH
Q 015892 121 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVV---PLTAAVIVTTPQKLAFIDV 193 (398)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~----~~~~~~~---a~d~viiv~~p~~~s~~~~ 193 (398)
.. .... +...+..+ .++|+|+|||+ |+.... .....+. .....++|+..+. ...++
T Consensus 254 v~---------~~~d----l~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~ 316 (420)
T PRK14721 254 IK---------DIAD----LQLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTL 316 (420)
T ss_pred CC---------CHHH----HHHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHH
Confidence 00 0111 12222222 68999999996 554311 1111111 1245666666553 34455
Q ss_pred HHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 194 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 194 ~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
...+..+... ..-++|+++.+...+. +.+-.+....+.|+.+
T Consensus 317 ~~~~~~f~~~--~~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~y 358 (420)
T PRK14721 317 DEVISAYQGH--GIHGCIITKVDEAASL--------GIALDAVIRRKLVLHY 358 (420)
T ss_pred HHHHHHhcCC--CCCEEEEEeeeCCCCc--------cHHHHHHHHhCCCEEE
Confidence 6666666554 4568999997654433 3556666677776543
No 131
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.46 E-value=0.00043 Score=67.93 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=109.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccccc------c-----c----CCCCCceee
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL------E-----M----NPEKRTIIP 110 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~------~-----~----~~~~~~i~~ 110 (398)
.|.|.+.--.+|||++++.|...|+++|++|.= +-+|.-++..+.-.+.... . . ....-.+.+
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~P--FK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP 80 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAP--FKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKP 80 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccCC--CchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEee
Confidence 455666667778999999999999999999853 3345444444432221100 0 0 000111122
Q ss_pred eccCCeEEEecccCCCcc--cc---cCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhhhhhhhhc------CC-Ce
Q 015892 111 TEYLGVKLVSFGFSGQGR--AI---MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------PL-TA 178 (398)
Q Consensus 111 ~~~~~l~vlp~~~~~~~~--~~---~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~~~~~~~~------a~-d~ 178 (398)
....+..+|-.+...... .. .........+.+.++.+. +.||+|++-...+.....+..-.+. .+ .-
T Consensus 81 ~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dap 159 (486)
T COG1492 81 CSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAP 159 (486)
T ss_pred cCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhcCCC
Confidence 222345555433221111 00 111122334455555554 8999999998876654432111111 11 24
Q ss_pred EEEEeCCChhhH-HHHHHHHHHHhc-cCCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCCCh
Q 015892 179 AVIVTTPQKLAF-IDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 179 viiv~~p~~~s~-~~~~~~~~~l~~-~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
+|+|..-+.-.. ..+.-++..+.. .+..+.|+++|+.+-+. .+-...++.+++..|.++++.+|+..
T Consensus 160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~------~ll~~gik~Le~~tg~~vlGv~P~~~ 228 (486)
T COG1492 160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDE------SLLDPGLKWLEELTGVPVLGVLPYLK 228 (486)
T ss_pred EEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCH------HHHhhHHHHHHHhhCCeeEeeccccc
Confidence 677777666322 233344444433 23457899999866554 23345688899999999999999866
No 132
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.46 E-value=0.00031 Score=58.41 Aligned_cols=40 Identities=33% Similarity=0.304 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEE-EEEecCCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYG 85 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl-lIDlD~q~ 85 (398)
++|.|++.| |+||||++..|...|.++|++|. +.|.|...
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~ 41 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQ 41 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTS
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCC
Confidence 478999887 89999999999999999999999 88999933
No 133
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.42 E-value=0.0012 Score=59.17 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+...........+..+|.+++|+.............++.+...+.+ ..+|+|+++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 457899999998644322222235577999999987543323334444555444544 4578899753
No 134
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.26 E-value=0.0012 Score=56.83 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
++.+++|+ +.-|+||||+...|...|..+|+||..|=.+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 56788888 5568999999999999999999999999776543
No 135
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.24 E-value=0.0029 Score=55.77 Aligned_cols=68 Identities=16% Similarity=0.254 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+++||||+-..........+..+|.+++|+.++..-.......+..+...+.+.+.+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 56678999999743322222223557899999999865434456677788888888766788899764
No 136
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.21 E-value=0.0044 Score=56.20 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=39.9
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 90 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~ 90 (398)
..+.+.+|.|. +-.|.||||....|-..+..++.+--+|-|||.....+.
T Consensus 15 ~~~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy 64 (366)
T KOG1532|consen 15 AIQRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPY 64 (366)
T ss_pred cccCCcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCC
Confidence 34456677777 666889999999999999999888999999997655443
No 137
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=97.16 E-value=0.00025 Score=54.04 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=25.1
Q ss_pred EEec-CCeeEEEEcCCCCcccCChHHHHhhhh
Q 015892 358 IRPM-GNYAVSITWPDGFSQIAPYDQLQTMER 388 (398)
Q Consensus 358 ~~~~-~~~~~~i~w~dgh~s~y~~~~L~~~~~ 388 (398)
+++. ++..|+|.|+||+++.|++.|||..|+
T Consensus 3 i~l~~~~~~l~i~w~DG~~~~~~~~~LRd~C~ 34 (89)
T PF06155_consen 3 IKLDKDERHLEIEWSDGQESRFPYEWLRDNCP 34 (89)
T ss_dssp EEEECCTTEEEEEETTSEEEEEEHHHHHHT-S
T ss_pred EEEecCCCEEEEEECCCCEEEECHHHHhccCC
Confidence 4443 445799999999999999999999954
No 138
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.15 E-value=7.5e-05 Score=67.96 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 015892 53 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 88 (398)
Q Consensus 53 KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~ 88 (398)
--|+||||.+.++...+...|++|.+|-+||.....
T Consensus 4 paGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~ 39 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENL 39 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccc
Confidence 359999999999999999999999999999976543
No 139
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.14 E-value=0.0012 Score=58.73 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.++ +..|+|||+++.++|...++.|.+|+.||.+.
T Consensus 12 g~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4666666 78999999999999999999999999999984
No 140
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.13 E-value=0.0011 Score=56.42 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=36.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
|++|+|++.+ |+||||++..|...|..+|++|..|-.|...
T Consensus 1 m~vi~i~G~~-gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGYS-GSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 5789999776 9999999999999999999999999887654
No 141
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.07 E-value=0.04 Score=58.85 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChhh------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcc
Q 015892 150 GELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 214 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~ 214 (398)
..+|++||.+.+|+--.. ........ --+|+|+.+..-+|..+...++.++..++++.++|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 358999999998874221 11111111 25899999999999999999999999999999999995
No 142
>PRK12740 elongation factor G; Reviewed
Probab=97.06 E-value=0.0039 Score=65.71 Aligned_cols=94 Identities=21% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
+..|++.+||||+...........+..+|.+++|+.++..-.......++.+...+.+.+ +|+|+++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467999999999865422222222557899999999977555556666777777777754 578997643311 1
Q ss_pred CChHHHHHHHhCCCeE-EecCC
Q 015892 229 RGSGSQVVQQFGIPHL-FDLPI 249 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~-~~ip~ 249 (398)
....+++.+.++.+.+ ..+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 2466778888886543 34664
No 143
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.04 E-value=0.0013 Score=64.91 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=40.4
Q ss_pred CCeEEEEEcCCC---CChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccC
Q 015892 43 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 93 (398)
Q Consensus 43 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~ 93 (398)
.+|+|.|+|.-- |-||||+|+|||..|++.|+||+++ ...+++...++
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg 87 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFG 87 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccC
Confidence 479999999877 9999999999999999999999987 44455555544
No 144
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.99 E-value=0.0029 Score=53.53 Aligned_cols=34 Identities=38% Similarity=0.570 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|-|+.+. |.||||.|..+|...+.+|+||+++=+
T Consensus 5 i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 5 IQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4445444 999999999999999999999999644
No 145
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.94 E-value=0.0051 Score=58.91 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
||+++-+++.-.|||||+++.+|+..|.++|.+|.++
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~ 37 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYF 37 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEE
Confidence 7899999999999999999999999999999999885
No 146
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.0017 Score=56.14 Aligned_cols=41 Identities=32% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+++|.+. +-.|+||||++.+||..|...|.+|.++|.|..
T Consensus 3 ~g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 46788887 666899999999999999988999999999864
No 147
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.92 E-value=0.0085 Score=53.39 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
....+.|+|||+...........+..+|.+++|+..+..-..........+...+.+.+-+|+|+++..
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 566789999986422111111124567999999988654334444455555666666566788997643
No 148
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.85 E-value=0.0049 Score=58.60 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=35.9
Q ss_pred CeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..||+|.|. -||+|||+++..||..|.++|++|.+|-=...
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 359999887 69999999999999999999999999865543
No 149
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.85 E-value=0.018 Score=58.67 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=59.9
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.+.++|||+...........+..+|.+++|+.+...--..+..+++.+...++++ -+++|+.+..... .
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~~~a~------~ 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDRDGRE------P 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcccccC------H
Confidence 36788999999975433221222255789999999886543345667777777778884 5677996533211 1
Q ss_pred CChHHHHHHHhCCCeE-EecCC
Q 015892 229 RGSGSQVVQQFGIPHL-FDLPI 249 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~-~~ip~ 249 (398)
.+.++++++.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 1356788888887644 23554
No 150
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=96.84 E-value=0.0023 Score=63.68 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCC---CChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCC
Q 015892 43 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 94 (398)
Q Consensus 43 ~~kvI~v~s~KG---GvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~ 94 (398)
..|+|.|+|.-- |-||||+|+|||..|++.|+|| ||+ ...+++...++.
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~ 104 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGV 104 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCC
Confidence 579999999777 9999999999999999999999 777 777777665543
No 151
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.82 E-value=0.002 Score=57.78 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+.++.| .+..|+||||++.++|..++.+|.+|+++|.+...
T Consensus 19 g~i~~i-~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQV-YGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 445555 47999999999999999999999999999987643
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.81 E-value=0.0078 Score=52.08 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..++++++|+|+...........+..+|.+++++.............+..+...+.+ +.+|+|+++.
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~ 126 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR 126 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence 367899999986433222222224467899999888654444445555555554444 5677898654
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.81 E-value=0.047 Score=47.86 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+.+.|+|||+.-.........+..+|.+++|+.............+..+...+.+ ..+|+|+++..
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence 567789999987433222222224567899999988654334444445555555666 46778997653
No 154
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.77 E-value=0.0032 Score=57.44 Aligned_cols=39 Identities=31% Similarity=0.326 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH------------CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~------------~G~rVllIDlD~q 84 (398)
.+++..+-||+||||++.++|..+|. .+.+|++++++-.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~ 52 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP 52 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence 35677799999999999999999873 4568999998764
No 155
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.76 E-value=0.0027 Score=53.52 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
+.+|-++ +.-|+||||+|..|...|..+|.+|.++|.|.-..
T Consensus 2 g~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3566665 77799999999999999999999999999997543
No 156
>PRK07667 uridine kinase; Provisional
Probab=96.76 E-value=0.003 Score=55.62 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+|++. +-.|+||||+|..|+..|...|.+|.++++|..
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 566665 888999999999999999999999999999974
No 157
>PRK05973 replicative DNA helicase; Provisional
Probab=96.75 E-value=0.0021 Score=58.22 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=49.1
Q ss_pred HHHHHHhcCCCccce-eEEeeecCCCCcccccccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 5 RANEVVLAIPWVNKV-NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+|.+.+.+=+|-.+- .+...+....|.. ++-.+..+ -.+.+..+..|+|||+++.++|...+++|.+|+++.++.
T Consensus 27 ~~~~~~a~~~g~~~w~~~~~~~~~~~p~~--~l~GGl~~--Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 27 EALDRIAAEEGFSSWSLLAAKAAATTPAE--ELFSQLKP--GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred HHHHHHHHHhccchHHHHHHhccCCCCHH--HhcCCCCC--CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 455556555555552 2333333333321 12223321 344555699999999999999999999999999999987
Q ss_pred C
Q 015892 84 Y 84 (398)
Q Consensus 84 q 84 (398)
.
T Consensus 103 s 103 (237)
T PRK05973 103 T 103 (237)
T ss_pred C
Confidence 4
No 158
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.73 E-value=0.0014 Score=58.00 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015892 52 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 52 ~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
+--|.||||-+..+...|+..|.+|.+|-+||..-.+.
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~ 46 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLP 46 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCC
Confidence 56689999999999999999999999999999765544
No 159
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.72 E-value=0.0079 Score=63.79 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=45.9
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+..|.+.|+|||+-..........+..+|.+++|+.....-.......++.+...+.+.+ +++|+++.
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 468999999999864422222233567899999998754323344566666666677765 88899754
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.0021 Score=58.60 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=31.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
-.+..+++|+|||+++.++|..|.++|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 34566999999999999999999999999999965
No 161
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0032 Score=55.63 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=38.4
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.....+.+|.+. +..|+||||++..|+..|...|..++++|.|...
T Consensus 19 ~~~~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 19 LHGHKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred hcCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 333457788887 6679999999999999999889999999988743
No 162
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.013 Score=51.42 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
|++++.++ +-=|+||||.+..++..++.+|++|+++
T Consensus 1 ~g~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 44555554 6669999999999999999999999998
No 163
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.67 E-value=0.018 Score=58.71 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=55.2
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.+.|+|||+...........+..+|.+++|+.+...-...+..+++.+...+.+ +-+++|+++..... .
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~------~ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD------P 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC------H
Confidence 3678899999998543222112225578999999988654333556667766666776 55677997643211 1
Q ss_pred CChHHHHHHHhCCC
Q 015892 229 RGSGSQVVQQFGIP 242 (398)
Q Consensus 229 ~~~~~~~~~~~g~~ 242 (398)
.+..+++++.++..
T Consensus 150 ~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 150 LELLDEVENELKIN 163 (527)
T ss_pred HHHHHHHHHHhCCC
Confidence 13567778888754
No 164
>PRK10218 GTP-binding protein; Provisional
Probab=96.61 E-value=0.042 Score=56.86 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=53.5
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.+.|+|||+...........+..+|.+++|+.....-.......+..+...+++.+ +++|+++..... .
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a~------~ 137 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGAR------P 137 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCCc------h
Confidence 367889999998754332222223557899999998866444556666777777888864 678997643211 1
Q ss_pred CChHHHHHHHh
Q 015892 229 RGSGSQVVQQF 239 (398)
Q Consensus 229 ~~~~~~~~~~~ 239 (398)
....+++.+.|
T Consensus 138 ~~vl~ei~~l~ 148 (607)
T PRK10218 138 DWVVDQVFDLF 148 (607)
T ss_pred hHHHHHHHHHH
Confidence 13455566655
No 165
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.60 E-value=0.021 Score=47.83 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=39.3
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..++++++|||+-..... ........+|.+++++.+..........+.+.+...+.+ ..+|+|+++.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 357899999876432111 011124456888888888765333344555555555555 4678898653
No 166
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.59 E-value=0.014 Score=50.12 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.+..++ + -|.||||.|..+|..++.+|+||+++=+-=
T Consensus 6 Gli~v~~-g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK 43 (173)
T TIGR00708 6 GIIIVHT-G-NGKGKTTAAFGMALRALGHGKKVGVIQFIK 43 (173)
T ss_pred cEEEEEC-C-CCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 4455444 3 799999999999999999999999985543
No 167
>PRK00007 elongation factor G; Reviewed
Probab=96.59 E-value=0.029 Score=59.36 Aligned_cols=94 Identities=21% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
+..+.+.+||||+-..........+..+|.+++|+.....--......++.+.+.+.+.+ +++|+++..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~------~ 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD------F 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999999754332222223557799999998755444456778888888898876 788997644321 1
Q ss_pred CChHHHHHHHhCCCe-EEecCC
Q 015892 229 RGSGSQVVQQFGIPH-LFDLPI 249 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~-~~~ip~ 249 (398)
....+++.+.++... ...+|.
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipi 166 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPI 166 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecC
Confidence 135678888887543 233555
No 168
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.56 E-value=0.033 Score=50.23 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhc--CCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~--a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+-+.+||||+--.........+. .+|.+++|+..+..-.......+..+...+++. .+|+|+++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 5778999999974332211111122 468899998876544556677888888889884 678899764
No 169
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=96.55 E-value=0.021 Score=53.36 Aligned_cols=163 Identities=18% Similarity=0.275 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 122 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~ 122 (398)
.+++|.+.+.---+||-|++..|...|.++|.++..+=....+- +. .. .|+ +
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGi----mi-a~------------------~Gv---~-- 162 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGI----MI-AG------------------YGV---P-- 162 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHH----HC-HS------------------EC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceE----EE-ec------------------CCe---e--
Confidence 67999999999999999999999999999999998876655331 11 00 000 0
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChh-----hhhhhhhcCCCeEEEEeCCChhh--------
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQKLA-------- 189 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~-----~~~~~~~~a~d~viiv~~p~~~s-------- 189 (398)
............+..+.-... ++.|++||-.-+++... ++..+.-..-|.+|+.-.|....
T Consensus 163 -----iDav~~DFvaGavE~~v~~~~-~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 163 -----IDAVPSDFVAGAVEALVPEAA-EEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHC-CC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred -----ccchhhhhHHHHHHHHHHhhC-cCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 011222334455566555543 25599999988777643 33344444669999999993322
Q ss_pred HHHHHHHHHHHhccC-----CCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEE
Q 015892 190 FIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 245 (398)
Q Consensus 190 ~~~~~~~~~~l~~~~-----~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 245 (398)
+..+.+.++.+..+. .+++++-+|-...+.. -.+...+++++++|+|..-
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~------e~~~~~~~~~~e~glPv~D 291 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEE------EAKAAIERIEEELGLPVTD 291 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HH------HHHHHHHHHHHHH-S-EE-
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCeee
Confidence 234455555555442 3378888886433321 1124678888888887543
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.53 E-value=0.021 Score=56.96 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015892 150 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~--------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
..+.+.|+|||+..... ......+..+|.+++|++....-...-..+.+.++..+.++ .+|+|+++
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~D 120 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV-ILVVNKVD 120 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcE-EEEEECcc
Confidence 44678999998644300 00111244679999998876522222234455666666664 57789976
No 171
>PRK06696 uridine kinase; Validated
Probab=96.53 E-value=0.0043 Score=55.96 Aligned_cols=43 Identities=26% Similarity=0.145 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..+.+|+|. +..|+||||+|..|+..|...|..|+.+-+|-..
T Consensus 20 ~~~~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 345667765 7889999999999999999889999998877653
No 172
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.53 E-value=0.0087 Score=53.57 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+.+..+.|+ ++.|+||||+|.+|+ .+++++|.|-.
T Consensus 9 ~~~~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 3344566666 999999999998874 47899999983
No 173
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.52 E-value=0.0042 Score=56.02 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.++.++ +..|+|||+++.++|...++.|.+|+.+|++
T Consensus 23 g~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4555555 8999999999999999999999999999998
No 174
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.51 E-value=0.019 Score=59.27 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=47.6
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+..+.+.|||||+-..........+..+|.+++|+.........+...+..+...+++. -+++|+++.
T Consensus 61 ~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred ECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 46788999999864332222122245779999999987655566677788888888886 578899764
No 175
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.005 Score=52.34 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+.+.+|=|+ +-.|.||||+|..|+..|-++|++|-++|-|---
T Consensus 21 ~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 345677777 5668899999999999999999999999999744
No 176
>PRK00049 elongation factor Tu; Reviewed
Probab=96.39 E-value=0.029 Score=55.16 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+++||||+-..........+..+|.+++++.+...-.......+..+...+.+.+.+++|+++.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45678999999743222222222456899999999876444566677788888888877678899764
No 177
>PRK08233 hypothetical protein; Provisional
Probab=96.38 E-value=0.0036 Score=54.24 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+++|+|.+.+ |+||||+|..||..|. +..++..|.+.+
T Consensus 3 ~~iI~I~G~~-GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVS-GGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 4788888776 9999999999999874 247778887764
No 178
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.34 E-value=0.013 Score=60.57 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+|++|+|++. -|+||||+...|...|.++|+||.+|--|..+
T Consensus 9 ~~~vi~ivG~-s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFCAY-SGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEEcC-CCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 4789999965 58999999999999999999999999986643
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.34 E-value=0.0096 Score=48.29 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=32.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..+.+. +..|+||||++..+|..+...+..++.++.+...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 456666 6689999999999999999877788888888754
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=96.33 E-value=0.058 Score=50.67 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+.++++|||+-..... .....+..+|.++++++.+..--......++.+...+.+ ..+|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCC
Confidence 447899999987433210 111124467889999887662223344555555555555 45778997643
No 181
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.33 E-value=0.029 Score=46.75 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=39.4
Q ss_pred CCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+...... .....+..+|.+++++.+..........+.+.++..+.+ +.+|+|+++.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457899999998554221 001113457889999887543222223455566665655 5677799643
No 182
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.29 E-value=0.044 Score=46.37 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+++.++|||+...........+..+|.+++|+.++..........+..+...+.+ +.+|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 468899999987433221111224467899999988754333444455556666766 4677799653
No 183
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.29 E-value=0.006 Score=53.09 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=33.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 48 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 48 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+..+..|+|||+++.+++...++.|.+|+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4556899999999999999999999999999998864
No 184
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.28 E-value=0.0066 Score=57.50 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++++-++ +.-|+||||++.+++...++.|.+|++||+..
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 4566666 56899999999999999999999999999875
No 185
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.0062 Score=51.27 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.4
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
+..++.|+||||++..++..++..|.+|++++.+....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 34588999999999999999999999999999987543
No 186
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.21 E-value=0.0061 Score=53.41 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=29.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHH----------CCCcEEEEEecCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 85 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~----------~G~rVllIDlD~q~ 85 (398)
++++.+.+|+||||++.++|..++. ++.+|+.|+++...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 5555688999999999999999996 67899999999853
No 187
>PRK12739 elongation factor G; Reviewed
Probab=96.21 E-value=0.05 Score=57.56 Aligned_cols=94 Identities=22% Similarity=0.122 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++.+.++++|||+-..........+..+|.+++|+.....--.....++..+...+.+.+ +++|+++..... .
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~------~ 142 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD------F 142 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999999743322222223556799999999765433455677777888888876 788997654321 1
Q ss_pred CChHHHHHHHhCCCeE-EecCC
Q 015892 229 RGSGSQVVQQFGIPHL-FDLPI 249 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~-~~ip~ 249 (398)
....+++.+.++.... ..+|.
T Consensus 143 ~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 143 FRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHhCCCceeEEecc
Confidence 1356777777765332 33554
No 188
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.19 E-value=0.0084 Score=56.68 Aligned_cols=41 Identities=37% Similarity=0.496 Sum_probs=36.5
Q ss_pred CCeEEEEEcCC-CCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~K-GGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
...||+|.|-- ||+|||-++.-||..|.++|++|.+|-=..
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35799999997 999999999999999999999999986543
No 189
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.19 E-value=0.058 Score=52.48 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
++++|+|++. -|+||||+...|...|.++|++|.+|--|...
T Consensus 204 ~~~~~~~~g~-~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVVGY-SGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEecC-CCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 5789999954 58999999999999999999999999877654
No 190
>PRK13351 elongation factor G; Reviewed
Probab=96.18 E-value=0.059 Score=57.05 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
+..+.+.++|||+...........+..+|.+++|+.....-.......++.+...+.+.+ +++|+.+..... -
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~------~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGAD------L 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCC------H
Confidence 356789999998754322222222456799999999866544455677777777788765 688997543311 1
Q ss_pred CChHHHHHHHhCCCeE
Q 015892 229 RGSGSQVVQQFGIPHL 244 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~ 244 (398)
...++++.+.++....
T Consensus 143 ~~~~~~i~~~l~~~~~ 158 (687)
T PRK13351 143 FKVLEDIEERFGKRPL 158 (687)
T ss_pred HHHHHHHHHHHCCCeE
Confidence 2457788888886544
No 191
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.18 E-value=0.37 Score=41.79 Aligned_cols=68 Identities=9% Similarity=-0.004 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
..+.+.|.|+++.-.........+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 3467788999874332222222245678899888875 445555666555555432 1246778898653
No 192
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.019 Score=52.73 Aligned_cols=91 Identities=14% Similarity=0.249 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCCCCChhhhhh-hhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 150 GELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~-~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
.+-.|-.+|||+-.+ ...++ .....+|.+|+|+..+.--+-.+..-+-+.++.+.+.+.+++|+++.-...+.. ..-
T Consensus 73 ~~rhyahVDcPGHaD-YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ell-elV 150 (394)
T COG0050 73 ANRHYAHVDCPGHAD-YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELL-ELV 150 (394)
T ss_pred CCceEEeccCCChHH-HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHH-HHH
Confidence 344578899987443 32222 123457999999988776666666666677788999999999998654422110 111
Q ss_pred CChHHHHHHHhCCC
Q 015892 229 RGSGSQVVQQFGIP 242 (398)
Q Consensus 229 ~~~~~~~~~~~g~~ 242 (398)
.....++.+.|+.+
T Consensus 151 emEvreLLs~y~f~ 164 (394)
T COG0050 151 EMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHcCCC
Confidence 12344556666644
No 193
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.18 E-value=0.054 Score=48.70 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCccc---------------ccccCCCCCce---------
Q 015892 53 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---------------LLEMNPEKRTI--------- 108 (398)
Q Consensus 53 KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~---------------~~~~~~~~~~i--------- 108 (398)
-.|.||=.+|+.++..|..+|++|..+-+||.-|--+..+.+-.. +-+.+...+.-
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 467899999999999999999999999999987655444333210 00000000000
Q ss_pred -------eeecc------CCeEEEecccCCCcccccCCccHHHHHHHHHhhcc-CCCCcEEEEcCCCCCChhhh----hh
Q 015892 109 -------IPTEY------LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL----TL 170 (398)
Q Consensus 109 -------~~~~~------~~l~vlp~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIID~pp~~~~~~~----~~ 170 (398)
+..+. .-+.++| .....+++.+..+. ...+|++|+..++..++.-. .+
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQviP--------------Hit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EA 155 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQVIP--------------HITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEA 155 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEECc--------------CccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHH
Confidence 00000 0122222 12222333333222 36899999999998886421 11
Q ss_pred hh-h----cC-----CCeEEEEeCC--ChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHHHHHHH
Q 015892 171 CQ-V----VP-----LTAAVIVTTP--QKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ 238 (398)
Q Consensus 171 ~~-~----~a-----~d~viiv~~p--~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (398)
.. + .. .+..++|... ...-..-++..++.+++.++...++|+|. .. ....+..+.++.-
T Consensus 156 irq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRs--e~-------pL~e~~keKIAlF 226 (255)
T cd03113 156 IRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRS--EK-------PLPPEIREKIALF 226 (255)
T ss_pred HHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeC--CC-------CCchHHHHHHHHh
Confidence 10 0 01 1222444332 33334466778899999999999999986 11 1223455566655
Q ss_pred hCCCeEEecCC
Q 015892 239 FGIPHLFDLPI 249 (398)
Q Consensus 239 ~g~~~~~~ip~ 249 (398)
.+++....++.
T Consensus 227 cnVpve~VI~~ 237 (255)
T cd03113 227 CDVPPEAVISA 237 (255)
T ss_pred cCCCHHHeeec
Confidence 57665444443
No 194
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.17 E-value=0.0078 Score=52.31 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
|+|. +.-|+||||+|..|+..|...|.+|.+|.+|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5554 7789999999999999999999999999998654
No 195
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.17 E-value=0.015 Score=52.44 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCC------CcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G------~rVllIDlD~ 83 (398)
++++.+. +..|+|||+++.++|...+..| .+|+.||.+.
T Consensus 19 g~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 5677766 6889999999999999988777 8999999875
No 196
>PF13479 AAA_24: AAA domain
Probab=96.13 E-value=0.022 Score=51.01 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..+.++ +.-|+||||++..+ -++++||+|..
T Consensus 4 ~~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred eEEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 345555 88899999998877 68999999985
No 197
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.11 E-value=0.28 Score=42.08 Aligned_cols=88 Identities=11% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC---CCeeEEEEccccccCCCceec
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK---VPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~~~~~~~~~ 225 (398)
..+.+-|+|+|+.-.........+..+|.++++...+ ..|+..+...+..+.... ...+.+|.|+.+.....
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~---- 136 (180)
T cd04127 61 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR---- 136 (180)
T ss_pred CEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----
Confidence 3466889999864322112122244678888888874 556666666666554431 22356788986643211
Q ss_pred ccCCChHHHHHHHhCC
Q 015892 226 PFGRGSGSQVVQQFGI 241 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~ 241 (398)
....+...++.+.++.
T Consensus 137 ~v~~~~~~~~~~~~~~ 152 (180)
T cd04127 137 QVSEEQAKALADKYGI 152 (180)
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1122334555555553
No 198
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.09 E-value=0.032 Score=46.93 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
.+.+.++|||+.-............+|.+++|+..+..-.......+..+...+.+.+-+|+|+++.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 4568899998643221111112346789999998764222223333334444455446688899654
No 199
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.00 E-value=0.22 Score=52.76 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
++++.+.++|||+-..........+..+|.+++|+.....--......++.+...+.+.+ +++|+++..... .
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------~ 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN------F 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 467889999999754332222222556799999998765333345566777777788865 688997644311 1
Q ss_pred CChHHHHHHHhCCCe-EEecCCC
Q 015892 229 RGSGSQVVQQFGIPH-LFDLPIR 250 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~-~~~ip~~ 250 (398)
....+++.+.++... ...+|.+
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135677888777543 2346653
No 200
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.98 E-value=0.013 Score=58.53 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEcccc
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
++.+.+.|||||+-..........+..+|.+++|+.+...-+ ..+.+.+..+..++++.+-+++|+.+
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 367889999999744433222333567899999999875322 36677788888899998888999975
No 201
>PRK15453 phosphoribulokinase; Provisional
Probab=95.96 E-value=0.015 Score=53.83 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
+...+|+|+ +--|+||||++..|+..|.+.|.++++++.|....
T Consensus 3 ~k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 345788887 66689999999999999988888999999998653
No 202
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.95 E-value=0.016 Score=51.68 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+.+|++. +..|+||||++..|+..+ .+.++.+++.|..
T Consensus 5 ~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 45677776 788999999999999988 4568999999875
No 203
>PHA02542 41 41 helicase; Provisional
Probab=95.95 E-value=0.01 Score=59.43 Aligned_cols=41 Identities=22% Similarity=0.116 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.-+.+.++.-|+||||++.|+|...++.|++|++++++-..
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 34556679999999999999999999999999999998744
No 204
>PRK06762 hypothetical protein; Provisional
Probab=95.95 E-value=0.011 Score=50.40 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|.+. +.-|+||||+|..|+..+ |..+.+++.|.
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 56777765 888999999999999887 44677887654
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.93 E-value=0.082 Score=47.57 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 216 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~ 216 (398)
..|.+.|+|||+-..........+..+|.+++|+.....-.......++.+...+.+ +.+++|+++
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 467889999998655433333335678999999987654444556666666666776 557789864
No 206
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.88 E-value=0.012 Score=54.69 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=32.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 83 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~ 83 (398)
+.+..+..|+||||++.++|..++.. |.+|+.+.++.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 44556999999999999999999987 99999999976
No 207
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.022 Score=54.79 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+--+...++--|+||||+-.++|..||+++ +||.|--..
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 344556679999999999999999999998 999987655
No 208
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.86 E-value=0.041 Score=47.95 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=30.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|.|+ .--|.||||.|..+|...+.+|.+|+++=+==
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 44444 45588999999999999999999999986543
No 209
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.86 E-value=0.011 Score=49.60 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=31.9
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+..+..|+||||+|..|+..+...|.++.++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 3448889999999999999999999999999887743
No 210
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.86 E-value=0.0094 Score=52.04 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=37.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
||+.-.++-+-.|.||||.+.++-...-.-|+++-+|-+||..-
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae 44 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE 44 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence 45555566677899999999999999999999999999999653
No 211
>PLN03127 Elongation factor Tu; Provisional
Probab=95.83 E-value=0.098 Score=52.25 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+++||||+--.........+..+|.+++|+..+..-.......+..+...+++.+-+++|+++.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45678999999744332222223456899999999865434456777788888898877778899764
No 212
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.82 E-value=0.015 Score=53.34 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
+|+|+ +--|+||||++..|+..|.+.|.+|.+|+.|....
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47776 56689999999999999999999999999998764
No 213
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.80 E-value=0.26 Score=43.40 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC-CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK-VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-....+....+..++.+++|..++ ..++..+...++.+.... ...+.+|.|+.+.
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 346788999864332222222244568888888874 456666666666655432 2235678898654
No 214
>PHA00729 NTP-binding motif containing protein
Probab=95.74 E-value=0.015 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
.|.++ +..||||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 44444 6789999999999999875
No 215
>PLN03126 Elongation factor Tu; Provisional
Probab=95.71 E-value=0.064 Score=53.98 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.+||+|+--.........+..+|.+++|+.....-.....+.+..+...+++.+-+++|+.+.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 45678999999633222222222456799999998765444556677777888898877888999764
No 216
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.70 E-value=0.1 Score=44.73 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+...........+..+|.+++|+..+.. +.... ..+..+...+.+ +.+|+|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-iiiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLE-IIPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCC-EEEEEECCCC
Confidence 567789999987543322222224567999999987642 22222 222233334555 5678899764
No 217
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.69 E-value=0.018 Score=53.14 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.++.+.-|+||||++.++|...+++|.+|+.++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 34445588999999999999999999999999999984
No 218
>PRK05439 pantothenate kinase; Provisional
Probab=95.67 E-value=0.024 Score=53.47 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=37.4
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHHHH--CCCcEEEEEecCCC
Q 015892 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 85 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllIDlD~q~ 85 (398)
...+.+.+|+|. +-.|+||||+|..|+..|.+ .|.+|.+|-+|-..
T Consensus 81 ~~~~~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 81 NGQKVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred cCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 344556788876 77799999999999999986 47899999999754
No 219
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.67 E-value=0.013 Score=53.67 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=31.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+..|-.|+||||+|..||..|...|.+|.++|.|.
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 45588999999999999999999999999998775
No 220
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.65 E-value=0.018 Score=52.22 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~q 84 (398)
++++.+. +..|+|||+++.+++...... +.+|+.||.+..
T Consensus 19 g~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 19 GSITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 5666665 778999999999999876543 479999999874
No 221
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.63 E-value=0.25 Score=41.42 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+...........+..++.++++... +..++..+...+..+... +.+ +.+|.|+++.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 356789999987443322222234456777777664 344555555555555443 344 5677899654
No 222
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.63 E-value=0.024 Score=49.38 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=35.7
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..+++.+|.+. +..|+||||++..|+..+...|..++++|.|.-
T Consensus 14 ~~~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 33456777766 666999999999999999888888999987763
No 223
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.60 E-value=0.5 Score=40.47 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+......+....+..+|.++++... +..|+..+....+.+... +.+ +.+|.|+++.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl 119 (172)
T cd04141 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDL 119 (172)
T ss_pred EEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhh
Confidence 346678899987543322222224467888887776 445566666544444432 233 5678899764
No 224
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.60 E-value=0.057 Score=47.23 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=36.9
Q ss_pred CCCcEEEEcCCCCCChhhhhh-hhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~-~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.++|||+-.. ..... .....+|.+++|+......-......+......+.+ +-+|+|+.+.
T Consensus 66 ~~~~~~i~DtpG~~~-~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGHAS-LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCcHH-HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 578899999986432 22211 112346888999887642212222233333444555 4578899654
No 225
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.56 E-value=0.034 Score=49.90 Aligned_cols=69 Identities=14% Similarity=0.083 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh------H-HHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA------F-IDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s------~-~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..+.+.++|||+...........+..+|.+++|+...... . ..+.+.+......+.+.+-+++|+.+..
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 6788999999864322221122234579999998886531 1 2334444555556666667788997643
No 226
>PF13245 AAA_19: Part of AAA domain
Probab=95.54 E-value=0.027 Score=41.37 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=27.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHC----CCcEEEEE
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 80 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~----G~rVllID 80 (398)
+.+..+--|+|||+++++++..+... |.+|+++-
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 34445778999999999999999865 88999873
No 227
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.49 E-value=0.016 Score=55.33 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=34.2
Q ss_pred EEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCCCC
Q 015892 48 AVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 86 (398)
Q Consensus 48 ~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q~~ 86 (398)
+|..+=.|+||||++..|+..|. .+|.+|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46668889999999999999998 5899999999998653
No 228
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.47 E-value=0.11 Score=44.70 Aligned_cols=45 Identities=22% Similarity=0.115 Sum_probs=33.8
Q ss_pred ccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 36 LPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 36 ~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
++......+.+...++ -|=||||.|..+|...+-+|+||+++=+=
T Consensus 14 ~~~~~~~~Gli~VYtG--dGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 14 LPLPYTIEGLVQVFTS--SQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred cccCCCCCCEEEEEeC--CCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 3444455566665542 36699999999999999999999998653
No 229
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.45 E-value=0.42 Score=40.64 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|+|+...........+..++.+++|++.+.. ++..+...+..+... ....+-+|.|+.+.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence 457789999987543222212224577899999887654 455555555554432 12236688899654
No 230
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.44 E-value=0.024 Score=49.22 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
..+-+.+.+ .-|+|||.+|..+|..+.++|++|+.++.+
T Consensus 46 ~~~~l~l~G-~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYG-PPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEE-STTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEh-hHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 345667664 579999999999999999999999999864
No 231
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.42 E-value=0.023 Score=51.75 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
+.+.++.-|+|||+++.++|..++.+ |.+|+.+.++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 44455888999999999999999987 999999998874
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.42 E-value=0.022 Score=52.42 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
..+-+.+. ++.|||||.+|+.+|..|.+.|.+|+++-.
T Consensus 104 ~~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred cCCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 45566666 889999999999999999988999999765
No 233
>PF13173 AAA_14: AAA domain
Probab=95.40 E-value=0.021 Score=46.51 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+++.+.+.+ ||||||++.+++..+. ...+++.+|+|-.
T Consensus 3 ~~~~l~G~R-~vGKTtll~~~~~~~~-~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPR-GVGKTTLLKQLAKDLL-PPENILYINFDDP 40 (128)
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence 566776554 8999999999998887 5578999999874
No 234
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.39 E-value=0.21 Score=42.15 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+...........+..+|.++++..++.. ++..+...++.+... +.+ +-+|.|+++.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 36789999998532222211223457888888887554 555666666655543 233 4677898654
No 235
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.37 E-value=0.019 Score=46.03 Aligned_cols=31 Identities=42% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|.| .+.-|+||||+|..||..+ |..++ ++|.
T Consensus 2 I~I-~G~~gsGKST~a~~La~~~---~~~~i--~~d~ 32 (121)
T PF13207_consen 2 III-SGPPGSGKSTLAKELAERL---GFPVI--SMDD 32 (121)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH---TCEEE--EEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHH---CCeEE--Eecc
Confidence 444 4888999999999999987 55554 4444
No 236
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.35 E-value=0.023 Score=50.03 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=30.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCc----EEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~r----VllIDlD~ 83 (398)
||+|. +-.|+||||+|..|+..|.+.|.. +.++.+|.
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 56665 777999999999999999988876 66666665
No 237
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.036 Score=46.57 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+|++.|.++ +.-||||||++.-+|-.|.+.|++|.-+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 466777776 7789999999999999999999998643
No 238
>PRK12736 elongation factor Tu; Reviewed
Probab=95.35 E-value=0.1 Score=51.34 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.+||||+--.........+..+|.+++|+..+..-.......+..+...+++.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 45678999999732222222222446799999998875434455667777788888877788999764
No 239
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.33 E-value=0.28 Score=45.49 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChh---h---h--hhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDI---Q---L--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~---~---~--~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.++++|||+-.... . . ....+..+|.++++++++...... ..+++.+...+.+. .+|+|+++.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 34568999998643210 0 0 011234679999999886543332 45566666666664 577899754
No 240
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.32 E-value=0.4 Score=39.52 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
..+++.++|+|+...........+..+|.+++++.++. .++..+...+..+.... ...+.+|.|+.+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 45788999998754332222222456799999988855 45666666666665543 2345788898654
No 241
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.31 E-value=0.025 Score=54.15 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=36.3
Q ss_pred CeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
-.||+|.|- =||+|||-++..||..|.++|++|.+|-=...
T Consensus 56 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 56 VPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred CCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 479999886 79999999999999999999999999875543
No 242
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.30 E-value=0.17 Score=49.75 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+--.........+..+|.+++|+.....-.....+.+..+...+++.+-+++|+++.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999999743322222222345699999998865333455677777888888877778899764
No 243
>PRK06526 transposase; Provisional
Probab=95.29 E-value=0.011 Score=54.26 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
+-+.++ +..|+|||++|.+||..+.++|++|+.+.+
T Consensus 99 ~nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 99 ENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred ceEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 445555 788999999999999999999999987533
No 244
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.29 E-value=0.11 Score=42.85 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCChhh-------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQ-------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~-------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
.++++++|+|+-..... ........+|.+++++.++.................+.+ ..+|+|+++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence 67899999997433211 111123457888888888766554444434444445555 4578898653
No 245
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.28 E-value=0.39 Score=40.37 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC-CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~ 217 (398)
....+.+.|+|+......+....+..+|.++++...+. .++..+...++.+.... .....+|.|+++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 45678999997532211111222456788988888754 34555556666555442 2235677898654
No 246
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.069 Score=50.35 Aligned_cols=42 Identities=33% Similarity=0.532 Sum_probs=37.7
Q ss_pred CeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 44 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..||+|.|. -||.|||-+++.||..|.++|.++.++-=...+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 479999886 799999999999999999999999999877654
No 247
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=95.23 E-value=0.13 Score=45.42 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=39.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhh-HHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s-~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+-+.|+|||+.-.........+..+|.+++|+..+... .......+..+...+.+.+-+|+|+.+.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 67899999874332222222244569999999887521 1223344555555566556678999654
No 248
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.4 Score=44.86 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=100.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCe--EEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV--KLVSF 121 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l--~vlp~ 121 (398)
+++|.+.+.---|||=|+|..|...+-..|.++..+-.+..+- +. ...|+ +-+++
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgi----l~-------------------~~~gvvvdav~~ 204 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGI----LI-------------------ADDGVVVDAVVM 204 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceee----EE-------------------ecCceEecchhH
Confidence 7899999999999999999999999999999988876665321 10 00111 11111
Q ss_pred ccCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh----hhhhhhcCCCeEEEEeCCChhhHH------
Q 015892 122 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI------ 191 (398)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~----~~~~~~~a~d~viiv~~p~~~s~~------ 191 (398)
+.....+..+.-.+...++|+|+|-.-+++.... +..+.-.+-|.++++-.|......
T Consensus 205 ------------DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~i 272 (339)
T COG3367 205 ------------DFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPI 272 (339)
T ss_pred ------------HHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcC
Confidence 1122233333322322489999999877665432 334344466899999888655444
Q ss_pred -HHHHHHHHHhcc-CCCeeEEEEccccccCCCceecccCCChHHHHHHHhCCCeEEecCC
Q 015892 192 -DVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 249 (398)
Q Consensus 192 -~~~~~~~~l~~~-~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ip~ 249 (398)
.+...+.....+ +.+++++.+|--..+. ...++..+.+..+||+|..-.+.+
T Consensus 273 p~leevi~l~e~l~~a~Vvgi~lNtr~~dE------~~are~~a~l~~efglP~~Dp~~~ 326 (339)
T COG3367 273 PPLEEVIALYELLSNAKVVGIALNTRNLDE------EEARELCAKLEAEFGLPVTDPLRF 326 (339)
T ss_pred CCHHHHHHHHHHccCCcEEEEEecccccCh------HHHHHHHHHHhhccCCcccccccc
Confidence 233333333333 3778999998633332 122356677777778665544444
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.17 E-value=0.19 Score=39.80 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCChhh---------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcc
Q 015892 150 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 214 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~---------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~ 214 (398)
....++|+|||+-..... .....+..+|.+++++..+..--.....+++.++ ....+-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 345678999998543211 1111234678899999977733344556667775 33445666674
No 250
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.15 E-value=0.39 Score=40.47 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
+.+.+.++|+|+...........+..++.+++++..... ++......+..+.+ .+.+ +.+|+|+++.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 456789999986433222212224567888998887543 34444444443322 2445 5678899753
No 251
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.15 E-value=0.52 Score=39.85 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccCC--CeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~ 217 (398)
..+.+.|.|+|+...........+..++.++++...+. .++..+...++.+..... ..+.+|.|+++.
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35678899998643322222222456788888888754 556666666665544322 246778898654
No 252
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.11 Score=50.44 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCC--CCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceeccc
Q 015892 150 GELDYLVIDMPP--GTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 150 ~~yD~VIID~pp--~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
.++-+=|+|||+ .++.-++-. +.|+|.+++|++.-.-=-..+.++.+.++-.++|++-+| |+.+...+..
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRt--LtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rdP----- 150 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRT--LTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRDP----- 150 (528)
T ss_pred CCeEEeccCCCCccccchhHHHH--HHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCCh-----
Confidence 455677899997 344455544 568899999999866555577888888888899987666 8854444331
Q ss_pred CCChHHHHHHHhCCCe
Q 015892 228 GRGSGSQVVQQFGIPH 243 (398)
Q Consensus 228 ~~~~~~~~~~~~g~~~ 243 (398)
-+.+.++++.+++..
T Consensus 151 -~ELLdEiE~~L~i~~ 165 (528)
T COG4108 151 -LELLDEIEEELGIQC 165 (528)
T ss_pred -HHHHHHHHHHhCcce
Confidence 267899999997643
No 253
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=95.12 E-value=0.3 Score=52.10 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=44.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+--............+|.+++|+..+..-...+...+..+...+++ +.+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccc
Confidence 346689999997443322222234567899999987654444555666677777888 5578899764
No 254
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.11 E-value=0.06 Score=48.74 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+. +--|+||||++.+++..++++|.+++.++.+.
T Consensus 24 g~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 24 GSLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4466665 77899999999999999999999999999775
No 255
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.11 E-value=0.28 Score=44.26 Aligned_cols=64 Identities=6% Similarity=0.047 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
...++++|||..+ ...... ...+|.++++++....-......+++.+...+.+.+-+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~-~~~l~~--ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDI-NAMIDI--AKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchH-HHHHHH--HHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 4457899999654 222223 346799999988764333344567777777777765568898653
No 256
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=95.03 E-value=0.035 Score=52.93 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=36.1
Q ss_pred CCeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
...||+|.|- -||+|||-++..||..|.++|++|.+|-=..
T Consensus 34 ~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 34 PVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred CCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3579999987 7999999999999999999999999986544
No 257
>COG2403 Predicted GTPase [General function prediction only]
Probab=95.01 E-value=0.034 Score=52.65 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
..+|+|.+..-|+|||+++.-+|..|.++|+||++|=.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 36899999999999999999999999999999999977
No 258
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.029 Score=52.29 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH----CC------CcEEEEEecCCCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGP 86 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~----~G------~rVllIDlD~q~~ 86 (398)
+.++.-+-||+||||++..|..+|+. -| .+|+.|-+...-+
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re 140 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYRE 140 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChH
Confidence 34455589999999999999999883 24 3577777766543
No 259
>PRK05433 GTP-binding protein LepA; Provisional
Probab=94.98 E-value=0.16 Score=52.80 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..|.+.|+|||+-..........+..+|.+++|++.+..--......+..+...+.+ +-+|+|+.+.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 467899999987544322222225578999999988653222233334444455666 4577899764
No 260
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.96 E-value=0.69 Score=38.69 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccCCC--eeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKVP--CIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~~~--~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+...........+..+|.++++..++ ..++..+...+..+.....+ .+.++.|+.+.
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3456788999864322222222244678899998875 44566666666666554322 35667898653
No 261
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.96 E-value=0.037 Score=51.04 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
-+.+.++.-|+|||+++.++|..++.. |.+|+.+.++..
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~ 59 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS 59 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence 455666899999999999999999987 699999999874
No 262
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.95 E-value=0.53 Score=39.84 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhccCC--CeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~ 217 (398)
.+.+.|.|+|+...........+..+|.++++... +..++..+...+..+..... ..+-+|.|+.+.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 45678899987543322222224567888888875 45566666666665554321 235677788654
No 263
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=94.94 E-value=0.68 Score=39.00 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+-|+|+|+...........+..+|.++++...+ ..++..+...++.+.... ...+.+|.|+.+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 456778899764332222112234578888888874 345556666555555432 1235677898653
No 264
>PRK15494 era GTPase Era; Provisional
Probab=94.94 E-value=0.34 Score=46.64 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCCCh---hh----hh-hhhhcCCCeEEEEeCCChhhHHHH-HHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGD---IQ----LT-LCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~---~~----~~-~~~~~a~d~viiv~~p~~~s~~~~-~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.++++|||+.... .. .. ...+..+|.++++++... ++... ...++.++..+.+.+ +|+|+++.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4456899999875321 00 00 011346788888887643 23232 345566666666654 67899764
No 265
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.92 E-value=0.054 Score=46.71 Aligned_cols=40 Identities=25% Similarity=0.210 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+|.|. +--|+||||++..|+..|...+..+.++|.|.
T Consensus 6 ~~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 6 NGYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 45677776 56688999999999999998888899987654
No 266
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.90 E-value=0.47 Score=39.99 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~ 217 (398)
..+.+-|.||++.-.........+..+|.++++..++. .+...+...++.+.+. +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccC
Confidence 45678899998644322222222456789999998754 4555666666666543 344 4578898653
No 267
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.88 E-value=0.45 Score=39.83 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+.++|+|+.-.........+..+|.++++..+.. .+...+...+..+.... ...+.+|.|+.+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 3567899998743322222222456798998888755 35555555555554432 2245677898653
No 268
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.88 E-value=0.55 Score=40.89 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccCC--CeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.++++...+. .++..+...+..+.+... ..+.+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 3567899998753322211112345788888888753 455566666666655431 235677899654
No 269
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=94.87 E-value=0.49 Score=42.17 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccC-----CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK-----VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~-----~~~~~vV~N~~~~ 217 (398)
.+.+.|.|+++.-....+....+..+|.++++.+.+.. ++..+...++.+.+.. ...+.+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 45678999986422111111224467889998887543 6666666666655432 1246778899764
No 270
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.85 E-value=0.48 Score=39.69 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.++++..++. .+...+...+..+... +. .+.+|.|+.+.
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~ 117 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI-VVILVGNKSDL 117 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEchhc
Confidence 34678899998743222211222446788888888754 4555555655555433 33 36677898654
No 271
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.80 E-value=0.41 Score=40.30 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhccCC--CeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+......+....+..++.++++... +..++..+.+.++.+..... ..+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35678899986433222222223456777777776 45666666666666654321 235677898654
No 272
>CHL00071 tufA elongation factor Tu
Probab=94.78 E-value=0.22 Score=49.25 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.++++|||+--.........+..+|.+++++.+...-.......+..+...+++.+-+++|+.+.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 45678999999722211111222456799999998875444556677778888888877788899764
No 273
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.76 E-value=0.049 Score=51.69 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++++-|+ +..|+||||+|.+++...++.|.+|+.||...
T Consensus 55 G~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 55 GRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 4566666 67999999999999999999999999999865
No 274
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.74 E-value=2.5 Score=36.49 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHh-c--cCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-K--LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~-~--~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.-.........+..+|.+++++..+. .++..+...+..+. . .....+.+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 45678999998653322221122456788999988753 44555554444332 2 122346678898653
No 275
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.72 E-value=0.55 Score=40.25 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
.|.+.|+|+|+..............++.++++...+. .++..+....+.+.+ .+.+ +.++.|+++.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 118 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDL 118 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhh
Confidence 4678899998743322221122334677777766543 445555555444433 2334 5588899764
No 276
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.70 E-value=0.26 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
++++-+++. -|+||||++.++...+.+.|..++.||....
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 789999976 5789999999999999889999999999764
No 277
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.69 E-value=0.05 Score=48.91 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=31.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH--CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~--~G~rVllIDlD~q 84 (398)
+|++. +-.|+||||+|..|+..|.. .+.+|.+|-+|..
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 35665 77899999999999999986 5678999988875
No 278
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.67 E-value=0.88 Score=38.14 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.+.|+|+|+.-.........+..++.++++...+. .++..+....+.+... +.+ +-+|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4567789998744322222222446788888877654 4555555544444332 334 45778997643
No 279
>PRK07933 thymidylate kinase; Validated
Probab=94.66 E-value=0.077 Score=47.45 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|+|- +-=|+||||++..|+..|..+|++|.++..-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~ 38 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFPR 38 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56776 44589999999999999999999999988743
No 280
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.66 E-value=0.095 Score=53.42 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
+.++.+. +-.|+|||+++.+++...+++ |.+|+.|.++..
T Consensus 31 Gs~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 31 GRPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4566665 778999999999999988877 999999999874
No 281
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.64 E-value=0.094 Score=46.21 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCcee-eeccCCeEEEecc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII-PTEYLGVKLVSFG 122 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~-~~~~~~l~vlp~~ 122 (398)
+..+.+- +--|+|||-++..+++.+-..|++|.++-... .+..++.... .....+. .-....+.++|..
T Consensus 28 GsL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~---T~refi~qm~------sl~ydv~~~~l~G~l~~~~~~ 97 (235)
T COG2874 28 GSLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL---TVREFIKQME------SLSYDVSDFLLSGRLLFFPVN 97 (235)
T ss_pred CeEEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEech---hHHHHHHHHH------hcCCCchHHHhcceeEEEEec
Confidence 4455554 77799999999999999999999999986543 1211211111 1111111 1123467777754
Q ss_pred cCCCcccccCCccHHHHHHHHHhhccCCCCcEEEEcC
Q 015892 123 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 159 (398)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~ 159 (398)
... ..+........|+.+++..+..++|+||||+
T Consensus 98 ~~~---~~~~~~~~~~~L~~l~~~~k~~~~dViIIDS 131 (235)
T COG2874 98 LEP---VNWGRRSARKLLDLLLEFIKRWEKDVIIIDS 131 (235)
T ss_pred ccc---cccChHHHHHHHHHHHhhHHhhcCCEEEEec
Confidence 332 2234445566778887777667899999998
No 282
>PLN02924 thymidylate kinase
Probab=94.64 E-value=0.066 Score=48.10 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.1
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
+....++++.|+|- +--|+||||.+..|+..|..+|++|.++..
T Consensus 9 ~~~~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~e 52 (220)
T PLN02924 9 ESSVESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWRF 52 (220)
T ss_pred CCCcCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence 34555678899988 566899999999999999999999876643
No 283
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.61 E-value=0.049 Score=54.11 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=32.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
+.+.++.-|+|||+++.++|..+| +.|++|+++.++-
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 445669999999999999999998 6799999999886
No 284
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=94.59 E-value=0.56 Score=39.79 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
..+.|+|+|+.-.........+..+|.++++...+ ..++..+...+..+.... ...+.+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 45788898774332222222234678888888874 556666666666555432 1235677798654
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=94.58 E-value=0.058 Score=49.80 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
+..+.++ +.-|+|||+++..+|..+..+|++|+.+++
T Consensus 102 ~~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CCeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 3456666 677999999999999998899999998863
No 286
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=94.58 E-value=0.89 Score=37.93 Aligned_cols=66 Identities=15% Similarity=0.048 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc-cC-CCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LK-VPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~-~~-~~~~~vV~N~~~~ 217 (398)
+.+.|+|||+...........+..+|.++++...+.. ++..+...+..+.. .+ ...+.++.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 4578999987443322222224467888888887643 45666666655443 22 1346788898765
No 287
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.57 E-value=0.16 Score=50.68 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=49.2
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhH-------HHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~-------~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
.+.+-+.|||||+--.........+..+|.+++|+.....++ ..+.+.+..+..++++.+-+++|+++.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 367889999999744433333333567899999999876433 355666777778899888888999763
No 288
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.56 E-value=0.054 Score=47.68 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+|++. +-.|+||||++..|+..+ .+.++.++.+|...
T Consensus 1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 35555 668999999999999988 56689999999643
No 289
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.53 E-value=0.079 Score=47.80 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+. +.-|+||||++.+++...+++|.+|+.+.++.
T Consensus 20 G~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CeEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4566665 78899999999999988888999999999865
No 290
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=94.53 E-value=1.5 Score=38.68 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhccCC--CeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~~~--~~~~vV~N~~~~ 217 (398)
.+.+-|.|+++.-....+...-+..+|.+++|... +..|+..+...++.+..... ..+.+|.|+.+.
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 46788999986433222222224467888888875 45667777666666654321 235778899764
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.51 E-value=0.065 Score=48.60 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+. +--|+|||+++.++++..+++|.+|++++++-
T Consensus 25 g~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 25 PSLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4566665 78899999999999999888999999999975
No 292
>PLN03118 Rab family protein; Provisional
Probab=94.49 E-value=0.36 Score=42.87 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHH-HHhcc---CCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVR-MFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~-~l~~~---~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|||+.-....+....+..+|.++++...+. .++..+...+. .+... ....+.+|.|+.+.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4678999998754433222222446788888887754 34445544332 22211 11234577898653
No 293
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.49 E-value=0.081 Score=37.98 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=26.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|++. +--|+||||++..|+..| .|.++.++|-
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 5555 566889999999999999 6788888876
No 294
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.47 E-value=0.76 Score=38.76 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCCCh------hhhh-hhhhcCCCeEEEEeCCChh--hHHHHHHHHHHHhccC----CCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGD------IQLT-LCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKLK----VPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~------~~~~-~~~~~a~d~viiv~~p~~~--s~~~~~~~~~~l~~~~----~~~~~vV~N~~~~ 217 (398)
+.+.++|||+-... .... ...+..+|.+++++..+.. ++..+....+.+.... ...+.+|+|+++.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 36889999884210 0111 1113357899999998765 5666666666655432 2234678899764
No 295
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.45 E-value=0.081 Score=49.94 Aligned_cols=46 Identities=28% Similarity=0.171 Sum_probs=36.9
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 88 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~ 88 (398)
+.+..+.+. +---+||||++.-|-.+..++|++.+.+|+|++.++.
T Consensus 101 ~~GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 101 SYGPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred ccCCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 344555555 2336899999999999999999999999999987754
No 296
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=94.45 E-value=2.4 Score=36.60 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
....+.++|+|+.-.........+..+|.+++++..+.. ++..+...+..+.. .+.+ +.+|+|+.+.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 356688899986322111111113467888888887654 34444444433322 2344 5677899653
No 297
>COG4240 Predicted kinase [General function prediction only]
Probab=94.45 E-value=0.057 Score=47.95 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCC-CcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G-~rVllIDlD~ 83 (398)
.+-++. +++--|+||||+|+.|-..|+++| +||+-+.+|-
T Consensus 49 rPli~g-isGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 49 RPLIVG-ISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred CceEEE-eecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 344555 557789999999999999999988 7999998885
No 298
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=94.39 E-value=0.57 Score=40.00 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC---CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~ 217 (398)
.+.+.|.|+|+.-....+....+..+|.+++|...+. .++..+...++.+.+.. ...+.+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 3567889998644332222223457789999988844 46666666666553322 1236788899654
No 299
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.35 E-value=0.76 Score=39.94 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=37.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccCC-CeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKV-PCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~~-~~~~vV~N~~~~ 217 (398)
+.+-|+|+++.-.........+..+|.++++...+ ..++..+...++.+..... ..+.+|.|+.+.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccc
Confidence 44567788764332211111233578888888774 4455555566666655421 235678899764
No 300
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.31 E-value=0.94 Score=37.92 Aligned_cols=68 Identities=9% Similarity=0.043 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccC-------CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK-------VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~-------~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+.-.........+..+|.++++..++.. ++..+...+..+.... ...+.+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 456788999987432222111123467889999887543 4555555555554321 2346778898654
No 301
>PRK12735 elongation factor Tu; Reviewed
Probab=94.31 E-value=0.33 Score=47.77 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=45.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+...++++|||+--.........+..+|.+++++.....-.....+.+..+...+++.+.+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45568999999742222112222446799999998865334455567777777888877677899764
No 302
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.29 E-value=0.079 Score=47.56 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
....|.++ ++.|||||+++..++..+.+.|.+++.+|++..
T Consensus 37 ~~~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34566666 677999999999999998888899999988653
No 303
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=94.27 E-value=0.27 Score=41.70 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=24.7
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+..+-=|+||||+...+.... .|.++.++-.|.
T Consensus 4 ~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 344666999999999887653 588888876665
No 304
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=94.24 E-value=0.5 Score=39.41 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc-c--CCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-L--KVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~-~--~~~~~~vV~N~~~~ 217 (398)
.+++.|+|+|+...........+..+|.++++..+... ++..+...+..+.. . ....+.+|.|+++.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence 56789999987544222222224467899999998765 45555444443322 1 12235677898653
No 305
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=94.22 E-value=0.079 Score=46.21 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 149 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 149 ~~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
...+.+.+||||+...........+..+|.+++|+.+...-.......++.+...+++ .-+++|+++..
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence 3788899999997543322222335578999999998765556778888899999999 77888996543
No 306
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.20 E-value=0.7 Score=38.34 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC---CCeeEEEEcccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK---VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~~ 218 (398)
.+.+.++|+|+...........+..+|.++++..++ ..++..+......+.... ...+.+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 467889999885433222222244678888888764 345555555555554432 23466888997643
No 307
>PTZ00416 elongation factor 2; Provisional
Probab=94.16 E-value=0.25 Score=53.43 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
..|-+.+||||+...........+..+|.+++|+.+...-......+++.+...+.+.+ +++|+++..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35778999999865543333333567899999999876544566778888887787754 667986543
No 308
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=94.13 E-value=2.1 Score=36.99 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccccCCCcee
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~ 224 (398)
+.+.+.++|+|+...........+..++.+++|+..... ++......+..+.+ .+. .+-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~-piliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV-PFLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCC-CEEEEEeCccccCC----
Confidence 456788999987543222212224567889998887543 34444444433322 233 36778898654221
Q ss_pred cccCCChHHHHHHHhCCC
Q 015892 225 YPFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~~ 242 (398)
...+++++.++..
T Consensus 134 -----~~~~~i~~~l~l~ 146 (184)
T smart00178 134 -----ASEDELRYALGLT 146 (184)
T ss_pred -----CCHHHHHHHcCCC
Confidence 2356788888743
No 309
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.11 E-value=1.1 Score=38.24 Aligned_cols=66 Identities=8% Similarity=-0.001 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
.+.+.++|+|+.-.........+..+|.+++|...+.. ++......+..+.. .+. .+-+|.|+++.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGA-TLLILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCC-CEEEEEECccc
Confidence 46688999986432211111124467888888887655 44444444433321 233 35678899654
No 310
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.10 E-value=0.26 Score=48.99 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCCh------h--hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGD------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~------~--~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
....+.|+|||+-... . ......+..+|.+++|+++...-...-..+.+.+++.+.+ +-+|+|+++.
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~ 119 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDG 119 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccC
Confidence 3445889999863211 0 0011124467889999887643222334456666666666 4567799764
No 311
>PRK06217 hypothetical protein; Validated
Probab=94.10 E-value=0.075 Score=46.23 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.|.|. +-.|+||||+|..||..| |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 345555 677999999999999876 443 677775
No 312
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.08 E-value=0.3 Score=49.28 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCCh---h---h--hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGD---I---Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~---~---~--~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
....+.|+|||+-... . . .....+..+|.+++|+..+......-..+.+.++..+.+ +.+|.|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 4456888999873311 0 0 011124467999999998653222234555666665666 4577899764
No 313
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.07 E-value=0.068 Score=51.07 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+-+.++ +.-|+|||+++..+|..+.++|++|+.+.++-
T Consensus 182 ~~~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 182 NNENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred cCCcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 34566666 67799999999999999999999999988754
No 314
>PRK12377 putative replication protein; Provisional
Probab=94.07 E-value=0.081 Score=48.39 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.-+.++ +.-|+|||++|..+|..|.++|++|+.+.+.
T Consensus 102 ~~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 455555 6779999999999999999999999988764
No 315
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.05 E-value=0.1 Score=47.13 Aligned_cols=41 Identities=32% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE-EEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll-IDlD~q 84 (398)
.+.+|++. +..|+||||++-.|+..+...+-.+.+ +.+|..
T Consensus 32 ~~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 32 RRTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 45677776 889999999999999999987766666 777653
No 316
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=93.99 E-value=1.3 Score=38.61 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhccC-CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~ 217 (398)
.+.+-|.|+++.-....+...-...+|.+++|... +..|+..+...++.+.... .-.+-+|.|+.+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 46678889876433222211113467888888876 5677778877777775532 2235678898654
No 317
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=93.98 E-value=0.07 Score=48.14 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 78 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll 78 (398)
+|+|+ |+.||||+...||..|..+|+||++
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~~g~~v~~ 30 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLV 30 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 46777 4579999999999999999999987
No 318
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.97 E-value=0.73 Score=47.67 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 153 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 153 D~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
.+.|+|||+.-............+|.+++|+..+..........+..+...+.+ +-+++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECccc
Confidence 689999997544322222224467899999987654444555556666667777 5577899764
No 319
>PRK08118 topology modulation protein; Reviewed
Probab=93.93 E-value=0.063 Score=46.03 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHH
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
+.|.|. +-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 445555 678999999999998776
No 320
>PRK05595 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.082 Score=52.89 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=32.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~ 83 (398)
-+.+.++.-|+|||+++.|+|..+| ++|++|+++.+.-
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4556678999999999999999887 6799999998875
No 321
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=93.86 E-value=1.3 Score=39.61 Aligned_cols=66 Identities=17% Similarity=0.033 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhc-CCCeEEEEeCCC-hhhHHHHHHHHHHHhccC---CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~-a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~ 217 (398)
..+.+.|+|+|+.- ...... ... .+|.+++|...+ ..++..+...+..+.... ...+.+|.|+++.
T Consensus 48 ~~~~l~i~Dt~G~~-~~~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQE-MWTEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcc-hHHHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 35678899998754 111111 122 578888888775 446666666666665432 1235778898654
No 322
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.065 Score=46.90 Aligned_cols=34 Identities=32% Similarity=0.204 Sum_probs=29.3
Q ss_pred EcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 50 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 50 ~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+=-|+||||.|-+||..|.+++.+|..+..|.
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 3477799999999999999999999997776655
No 323
>PRK05380 pyrG CTP synthetase; Validated
Probab=93.84 E-value=0.23 Score=49.99 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCeEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCccc
Q 015892 43 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMV 92 (398)
Q Consensus 43 ~~kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l 92 (398)
|+|-|.|+++ -.|.||=.+|+.|+..|..+|++|..+-+||.-|--+..+
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gtm 51 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTM 51 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCC
Confidence 4566666644 6688999999999999999999999999999876544443
No 324
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.81 E-value=0.27 Score=51.22 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 153 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 153 D~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
-+-|||||+--.........+..+|.+++|+..+..-.......+..+..++.+.+.+|+|+++.
T Consensus 52 ~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 52 VLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred EEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 46799998632221112222456799999998776444555666677777888877789999764
No 325
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=93.80 E-value=0.098 Score=49.17 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=33.6
Q ss_pred cceeeeccCCcEEEEEecCCCeeEEechhhhhcCCCCCcc
Q 015892 295 STAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQS 334 (398)
Q Consensus 295 ~~~~~~~~~~~~l~v~~~d~~~~~~~~~~~LR~~c~c~~c 334 (398)
+..+.++...+.+.|+|+||.. +.||..|||+-|....-
T Consensus 75 ~~~l~~ded~k~l~I~W~Dgh~-s~Fpl~wlker~fs~~~ 113 (407)
T KOG3888|consen 75 PQDLQIDEDRKSLVIKWSDGHH-SQFPLQWLKERCFSSQV 113 (407)
T ss_pred cceeeEcccCcEEEEEecCCCc-ccCCHHHHHhhCcchHH
Confidence 3457788889999999999999 89999999999877643
No 326
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.80 E-value=1.3 Score=36.73 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC--CCeeEEEEcccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+.+.++|+|+.-.........+..+|.++++...+. .++..+...++.+.... ...+.+|.|+.+..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 3457888888643222222112346788888887644 34555555555544332 12356778986543
No 327
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.80 E-value=1 Score=38.20 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCcEEEEcCCCCCChh-hhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~-~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
..+.+-|+|+++.-... .........+|.++++..++. .++..+...++.+... +.+ +.+|.|+.+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 35778899997643221 111111335688888888754 4556666655555443 233 5678898654
No 328
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.79 E-value=0.1 Score=52.21 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+..+..|+||||++.++|..++++|.+|+.++...
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 35555689999999999999999999999999999864
No 329
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.78 E-value=0.11 Score=45.26 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
++|+|. +-=|+||||++..|+..|..+|++|..+..
T Consensus 1 ~~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 356776 566899999999999999999999976654
No 330
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=93.77 E-value=0.38 Score=49.92 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..|.+.|+|||+...........+..+|.+++|+..+...-......+......+++ +-+|+|+++.
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl 134 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDL 134 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCC
Confidence 357889999987554332222235678999999988653222222233333345666 5677899764
No 331
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.76 E-value=0.12 Score=42.05 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+.+.++ +..|+||||++..++..+...+.+|..+++...
T Consensus 19 ~~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 19 PKNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 3455555 888999999999999999888888988887653
No 332
>PRK05642 DNA replication initiation factor; Validated
Probab=93.73 E-value=0.091 Score=47.71 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=30.7
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+..+..|+|||.++..++..+.++|++|+.++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 44488899999999999999988899999998864
No 333
>PRK08727 hypothetical protein; Validated
Probab=93.71 E-value=0.095 Score=47.56 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
-+.++ +.-|+|||.++..++..+.++|++|..+.++
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 45555 7789999999999999999999999998754
No 334
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.70 E-value=0.14 Score=47.87 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC--CCcEEEEEecCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~--G~rVllIDlD~q~ 85 (398)
+.+.+|+|. +--|+||||++..|+..+.+. +.+|.++.+|...
T Consensus 60 ~~p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 446788877 777999999999999888753 4479999988854
No 335
>PRK08506 replicative DNA helicase; Provisional
Probab=93.69 E-value=0.099 Score=52.66 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
-+.|+++.-|+|||+++.|+|..++++|++|+++-+.-.
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 355566999999999999999999999999999988763
No 336
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.69 E-value=0.1 Score=50.70 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.+.+..+..|+||||++..+|..+++.|.+|+.++...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 34555689999999999999999999999999998764
No 337
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.68 E-value=0.12 Score=44.33 Aligned_cols=27 Identities=48% Similarity=0.598 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 55 GVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 55 GvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|=||||-|..+|...+-+|.||+++=+
T Consensus 13 GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 13 GKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp SS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred CCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 559999999999999999999999854
No 338
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=93.63 E-value=1.5 Score=37.41 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHH-hcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l-~~~--~~~~~~vV~N~~~~ 217 (398)
+...+.++|+|+...........+..+|.+++|+..+.. ++..+...+..+ ... ....+.++.|+.+.
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 345688999987543221111224577889998887643 344444433333 222 12236778899653
No 339
>PRK08760 replicative DNA helicase; Provisional
Probab=93.63 E-value=0.09 Score=52.97 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=32.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q 84 (398)
-+.|.++.-|+|||+++.|+|...|. .|++|+++-+.-.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs 269 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS 269 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC
Confidence 44555699999999999999999985 5999999988764
No 340
>PLN00223 ADP-ribosylation factor; Provisional
Probab=93.61 E-value=4.3 Score=34.97 Aligned_cols=84 Identities=10% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc---cCCCeeEEEEccccccCCCceec
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~---~~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
+.+.+.|.|+|+..........-+..+|.+|+|.+.+. .++..+...+..+.. .....+.+|.|+.+....
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----
Confidence 45678889998642221111112446788999988754 344444443333321 122346778899653221
Q ss_pred ccCCChHHHHHHHhCCC
Q 015892 226 PFGRGSGSQVVQQFGIP 242 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~~ 242 (398)
...+++.+.++..
T Consensus 134 ----~~~~~~~~~l~l~ 146 (181)
T PLN00223 134 ----MNAAEITDKLGLH 146 (181)
T ss_pred ----CCHHHHHHHhCcc
Confidence 1356777777743
No 341
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.61 E-value=1.4 Score=36.78 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
.+.+.|.|+|+.-.........+..++.++++...+ ..++..+....+.+... +.+ +-+|.|+++.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 118 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDL 118 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 345678899874332211111134567777777654 45566666665555432 344 4578899654
No 342
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=93.60 E-value=0.21 Score=51.74 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+.-.........+..+|.+++|+..+..-.......+..+...+++.+.+++|+++.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3678999998632222222222456799999999876433444455566677788867788999754
No 343
>PRK09354 recA recombinase A; Provisional
Probab=93.60 E-value=0.12 Score=49.64 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
++++-|+ +--|+||||++.+++...++.|.+|+.||....
T Consensus 60 G~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s 99 (349)
T PRK09354 60 GRIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 99 (349)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 4566666 579999999999999999999999999998763
No 344
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=93.58 E-value=0.33 Score=52.54 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..|-+-|||||+-.+........+..+|.+++|+.....-...+.++++.+...+.+. .+++|+.+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~-i~~iNK~D~ 162 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 162 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCE-EEEEECCcc
Confidence 3556679999976554433334466789999999986544456677888888888876 467799654
No 345
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.56 E-value=0.13 Score=46.20 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=34.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.+. +.-|+|||+++.+++...+++|.+|+.++++-
T Consensus 16 g~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 16 GHVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4566665 56899999999999999888999999999987
No 346
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.55 E-value=0.52 Score=46.87 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hH-HHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AF-IDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~-~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+--.........+..+|.+++|+..+.. ++ ......+..+...+.+.+.+++|+.+.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 678899999997432211111224467999999888641 22 233444555566676667788999764
No 347
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.54 E-value=0.16 Score=46.88 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+++.|. +--|+|||+++.+++...++.|.+|+.|-++-..
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 5666665 7779999999999999999999999999999854
No 348
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.52 E-value=0.15 Score=44.68 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
++.|+|. +-=|+||||++..|+..|...|++|..+-.
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4678877 445889999999999999999999977643
No 349
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.51 E-value=0.092 Score=44.85 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.|.+. +..|+||||+|..||..| |. .++|.|.
T Consensus 4 ~~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 4 GPNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CCeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 4555555 888999999999999987 33 4556654
No 350
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.50 E-value=0.13 Score=46.41 Aligned_cols=40 Identities=33% Similarity=0.313 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q 84 (398)
.+-++|. +.-|+|||+++..|...+. +.|.+++++|..-.
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4677888 6779999999999999999 88999999987553
No 351
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.49 E-value=0.12 Score=51.82 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
-+.+..+.-|+||||++.++|..+++.|.+|+.++...
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 34456688999999999999999999999999999874
No 352
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.44 Score=50.04 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=65.1
Q ss_pred CC-CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceeccc
Q 015892 149 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 149 ~~-~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
|. .|.+-|||||+-.+....-...+..+|.+++|+.+..-=...+..+++.+.+.+++.+. ++|+++.-...
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~-fiNKmDR~~a~------ 144 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL-FVNKMDRLGAD------ 144 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEE-EEECccccccC------
Confidence 45 48899999999777554433446678999999998766666788889999999998754 45985432211
Q ss_pred CCChHHHHHHHhCCCeE-EecCCC
Q 015892 228 GRGSGSQVVQQFGIPHL-FDLPIR 250 (398)
Q Consensus 228 ~~~~~~~~~~~~g~~~~-~~ip~~ 250 (398)
-....+++.+.++.... ..+|..
T Consensus 145 ~~~~~~~l~~~l~~~~~~v~~pIg 168 (697)
T COG0480 145 FYLVVEQLKERLGANPVPVQLPIG 168 (697)
T ss_pred hhhhHHHHHHHhCCCceeeecccc
Confidence 12467788888875433 335543
No 353
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.40 E-value=0.11 Score=46.16 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+.+|++. +..|+||||++..|+..+.. ..+.++..|..
T Consensus 5 ~g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CeEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 45778876 78899999999999988754 35666766664
No 354
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=93.39 E-value=3.6 Score=35.11 Aligned_cols=83 Identities=10% Similarity=0.086 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc-c--CCCeeEEEEccccccCCCceec
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-L--KVPCIAVVENMCHFDADGKRYY 225 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~-~--~~~~~~vV~N~~~~~~~~~~~~ 225 (398)
..+.+.|.|+|+..........-+..+|.++++.+.+. .++..+...+..+.. . ....+.+|.|+.+....
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 129 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA----- 129 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-----
Confidence 34678999998754432221112456788999988764 345555555544422 1 12346788899654221
Q ss_pred ccCCChHHHHHHHhCC
Q 015892 226 PFGRGSGSQVVQQFGI 241 (398)
Q Consensus 226 ~~~~~~~~~~~~~~g~ 241 (398)
...+++.+.++.
T Consensus 130 ----~~~~~i~~~~~~ 141 (175)
T smart00177 130 ----MKAAEITEKLGL 141 (175)
T ss_pred ----CCHHHHHHHhCc
Confidence 123566666663
No 355
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=93.39 E-value=1.7 Score=36.68 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+.|.|+|+...........+..++.++++.+.+ ..++..+...++.+.... ...+.+|.|+++.
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECccc
Confidence 356788899763322221122244567788877754 445555555555554432 2236788898764
No 356
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.38 E-value=0.12 Score=48.93 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.+-+-++ +.-|+|||.++..+|..|+++|++|.++.+.
T Consensus 156 ~~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 3455555 6779999999999999999999999998764
No 357
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.34 E-value=1.6 Score=36.65 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEcccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~~ 218 (398)
.+.+.|.|+|+.-....+....+..+|.++++...+ ..++..+...+..+... +.+ +-+|.|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcch
Confidence 566778999864332221111234567787777654 44555665555554332 344 56888997643
No 358
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.22 Score=41.33 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=39.0
Q ss_pred cccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 37 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 37 ~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+-+.+.+-+|=++ +-.|.||||+|..|..+|-++|+-.-.+|-|--.
T Consensus 24 q~l~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 24 QKLLKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVR 71 (207)
T ss_pred HHHhcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccc
Confidence 34455667788877 5568899999999999999999999999988643
No 359
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.30 E-value=5.8 Score=35.54 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC-C-CeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-V-PCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~-~-~~~~vV~N~~~~ 217 (398)
..|.+.|+|+++.-....+....+..+|.++++...+. .++..+...+..+.... . ..+.+|.|+.+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 45678999998754332222222446788888888654 46666655444444322 1 235688898764
No 360
>PLN02796 D-glycerate 3-kinase
Probab=93.30 E-value=0.16 Score=48.52 Aligned_cols=41 Identities=24% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
.+-+|+|. +.-|+||||++..|+..+...|.++..|-+|-.
T Consensus 99 ~pliIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 99 PPLVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCEEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 45667776 778999999999999999887888888877753
No 361
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=93.27 E-value=1.2 Score=39.23 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCC------Chhh--hhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc-----CCCeeEEEEcccc
Q 015892 151 ELDYLVIDMPPGT------GDIQ--LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL-----KVPCIAVVENMCH 216 (398)
Q Consensus 151 ~yD~VIID~pp~~------~~~~--~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~-----~~~~~~vV~N~~~ 216 (398)
.|.+.|+|||+.- +... .....+..+|.++++...+ ..|+..+....+.+... ....+.+|.|+.+
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~D 127 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRD 127 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcc
Confidence 4778899997621 1110 0111245689999999884 44566666665555432 1123578889965
Q ss_pred c
Q 015892 217 F 217 (398)
Q Consensus 217 ~ 217 (398)
.
T Consensus 128 l 128 (198)
T cd04142 128 Q 128 (198)
T ss_pred c
Confidence 4
No 362
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=93.26 E-value=1 Score=48.15 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCCCCChhh------------hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQ------------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~------------~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+++.++|+|+..+... ........+|.++.|++.+... ....+...+.+.+.+ .-+++||.+.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhh
Confidence 567789999987543211 0011112578899999876532 223344556667777 4567799765
Q ss_pred cCCCceecccCCChHHHHHHHhCCCeEEe
Q 015892 218 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 246 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 246 (398)
..+.. . ....+.+++.+|.+++..
T Consensus 125 ~~~~~----i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 125 AEKQN----I-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred hhccC----c-HHHHHHHHHHhCCCEEEE
Confidence 32211 1 135677888999886644
No 363
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.25 E-value=0.16 Score=46.18 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.|. +--|+|||+++.++++..+++|.+|+.+.++-.
T Consensus 21 gs~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 21 RNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 4555554 888999999999999998899999999999873
No 364
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.23 E-value=1.6 Score=43.51 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~---------~--~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
...++.++|||+-... . ......+..+|.+++|++.+......-.+++..+...+.+ +-+|+|+++.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 4567899999873211 0 0111124467999999998764444444566666666665 4578899654
No 365
>PLN03108 Rab family protein; Provisional
Probab=93.23 E-value=1.7 Score=38.47 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccccCCCceeccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 227 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~~~~~~~~~~~ 227 (398)
+.+-|+|++............+..+|.++++...+.. ++..+...+..+... +.+ +-+|.|+.+..... ..
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~----~~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR----AV 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc----CC
Confidence 3466788875433222222223456888888887543 444444444444332 233 56778986543211 11
Q ss_pred CCChHHHHHHHhCCCeEEecCCChhhhhcccCCCceEeeCC--CCHHHHHHHHHHHHHHHHHH
Q 015892 228 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP--CGEVANTFQDLGVCVVQQCA 288 (398)
Q Consensus 228 ~~~~~~~~~~~~g~~~~~~ip~~~~i~~a~~~g~~v~~~~~--~s~~~~~~~~la~~i~~~i~ 288 (398)
..+..+.+.+.++.+ +++... .....+.|..+++.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~--------------------~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 130 STEEGEQFAKEHGLI--------------------FMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CHHHHHHHHHHcCCE--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 122334444444432 222211 22456668888887776654
No 366
>CHL00189 infB translation initiation factor 2; Provisional
Probab=93.22 E-value=0.37 Score=50.96 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=42.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.|+|||+.-.........+..+|.+++|+..+......+...+..+...+++ +-+++|+++.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCc
Confidence 357799999987432222222224567999999977654334445556666677777 4577899654
No 367
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.21 E-value=0.14 Score=46.16 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+.++ +.-|+|||+++..++..+.+.|.++..+|+..
T Consensus 43 ~~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345444 88899999999999999988999999999865
No 368
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=93.21 E-value=1.9 Score=35.99 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccC---CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~---~~~~~vV~N~~~~ 217 (398)
..+.+.++|+|+...........+..+|.++++...+. .++..+...++.+.... ...+.+|.|+.+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 34678999998754332222222345788888888754 45555555555554431 1225677898654
No 369
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.20 E-value=0.17 Score=49.45 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
.+-+|+|. +--|+||||++..|...+...|.+|..|-+|-.-
T Consensus 211 ~PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 45677776 6678999999999998888788999999888753
No 370
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.19 E-value=0.14 Score=45.18 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
.++..+ .+..|+||||+...++..+...|++|+++-
T Consensus 18 ~~~~~l-~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVL-QGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEE-EESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEE-EECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 345444 577899999999999999999999998874
No 371
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.19 E-value=1.8 Score=37.93 Aligned_cols=67 Identities=15% Similarity=0.036 Sum_probs=35.9
Q ss_pred CCcEEEEcCCCCCCh---hhh-----hhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGD---IQL-----TLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~---~~~-----~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.++|+|+|+-... ... .......+|.++++.+.+.. +........+.+...+ ...+.+|.|+++.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 347889999864221 000 00113357888888876543 3333433444444432 2246778899654
No 372
>PRK08181 transposase; Validated
Probab=93.16 E-value=0.1 Score=48.35 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
.+-+.++ +..|+|||.++..+|..+.++|++|+.+.+
T Consensus 106 ~~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 3445555 778999999999999999999999999875
No 373
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=93.16 E-value=0.48 Score=40.01 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCCChh--------hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCC
Q 015892 150 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 221 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~--------~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~ 221 (398)
....+.++|+|+-.+.. ....+.....|.++.|++++... .-..+...+.+++.|. -+++||++.-.+.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~--r~l~l~~ql~e~g~P~-vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE--RNLYLTLQLLELGIPV-VVVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH--HHHHHHHHHHHTTSSE-EEEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH--HHHHHHHHHHHcCCCE-EEEEeCHHHHHHc
Confidence 45789999999843311 11222234678999999987643 3345666677788885 5677997654433
Q ss_pred ceecccCCChHHHHHHHhCCCeEEec
Q 015892 222 KRYYPFGRGSGSQVVQQFGIPHLFDL 247 (398)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~g~~~~~~i 247 (398)
... -..+.+.+.+|.|++...
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEB
T ss_pred CCE-----ECHHHHHHHhCCCEEEEE
Confidence 221 147889999998866553
No 374
>PRK06749 replicative DNA helicase; Provisional
Probab=93.01 E-value=0.14 Score=50.91 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
-+.|.++.-|+|||+++.|+|...|++|++|+++-+.-.
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs 225 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS 225 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence 344556889999999999999999999999999988764
No 375
>PF05729 NACHT: NACHT domain
Probab=93.01 E-value=0.11 Score=43.65 Aligned_cols=26 Identities=38% Similarity=0.274 Sum_probs=22.5
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHCC
Q 015892 48 AVSSCKGGVGKSTVAVNLAYTLAGMG 73 (398)
Q Consensus 48 ~v~s~KGGvGKTT~a~nLA~~La~~G 73 (398)
.+..+.+|+||||++..++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 44569999999999999999999764
No 376
>PF12846 AAA_10: AAA-like domain
Probab=92.97 E-value=0.14 Score=47.83 Aligned_cols=33 Identities=42% Similarity=0.477 Sum_probs=29.1
Q ss_pred EcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 50 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 50 ~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+-++-|+||||++.++...+...|.+++++|-.
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 348889999999999999999999999999544
No 377
>PRK08116 hypothetical protein; Validated
Probab=92.93 E-value=0.14 Score=47.46 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
+.++ +.-|+|||.+|..+|..|.++|++|+.++..
T Consensus 117 l~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4444 7789999999999999999989999998753
No 378
>PRK06547 hypothetical protein; Provisional
Probab=92.87 E-value=0.14 Score=44.14 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..+.+|+|. +..|+||||+|..||..+ | +.++++|..
T Consensus 13 ~~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 13 GGMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 345677766 788999999999998874 3 445566643
No 379
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.87 E-value=0.19 Score=47.68 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~q 84 (398)
+.++-+ .+.-|+|||+++.++|...+. .|.+|+.||..-.
T Consensus 96 G~iteI-~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 96 MSITEV-FGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CeEEEE-ECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 344444 488899999999999976542 3579999998753
No 380
>PRK07261 topology modulation protein; Provisional
Probab=92.83 E-value=0.14 Score=43.99 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHH
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
.|.|+ +-.|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 35555 688999999999987654
No 381
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=92.79 E-value=1.4 Score=37.13 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHH-HHHHHHhcc--CCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~-~~~~~l~~~--~~~~~~vV~N~~~~~ 218 (398)
..+.+.|+|+|+...........+..+|.++++...+ ..++..+. ..++.++.. +. .+.+|.|+++..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV-PIILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEchhcc
Confidence 4578899999864332111111245678888887764 44555543 234444433 33 356778997643
No 382
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.72 E-value=0.17 Score=50.54 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q 84 (398)
-+.+.++.-|+|||+++.++|..++. .|++|+++-++..
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 34556689999999999999999986 6999999988864
No 383
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=92.67 E-value=2.3 Score=35.64 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=38.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHH-hc--cCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK--LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l-~~--~~~~~~~vV~N~~~~ 217 (398)
..+.+.|.|+|+.-.........+..+|.++++...+. .++..+...+..+ .. .....+.++.|+.+.
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 34668899998643221111112456799999998754 3455555444333 22 112345688899654
No 384
>PRK06761 hypothetical protein; Provisional
Probab=92.66 E-value=0.13 Score=47.85 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEE-EEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVll-IDlD~ 83 (398)
|+++|.|. +-.|+||||++..|+..|...|.+|-. .+.|+
T Consensus 2 m~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 2 MTKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 34566655 667899999999999999888888865 45554
No 385
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.66 E-value=0.15 Score=45.96 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~q 84 (398)
+.++.+. +--|+|||+++.++++..+++ |.+|+.+-++..
T Consensus 19 gs~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 19 GSVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred CcEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 4455555 677999999999999999988 999999999774
No 386
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.62 E-value=0.15 Score=47.61 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHC-CC-cEEEEEecCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GA-RVGIFDADVYGP 86 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~-rVllIDlD~q~~ 86 (398)
+..++|+++ +-||+||||+|..++.....+ .+ .|.-+++....+
T Consensus 17 ~~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~ 62 (287)
T PF00931_consen 17 NEVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS 62 (287)
T ss_dssp TSSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC
T ss_pred CCeEEEEEE-cCCcCCcceeeeecccccccccccccccccccccccc
Confidence 356777777 889999999999999875532 23 466677776543
No 387
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.58 E-value=0.52 Score=50.31 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..|-+.+||||+-..........+..+|.+++|+.....-.......++...+.+.+. -+++|+++.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4677899999975543222222355679999999876543445666777766667775 477899754
No 388
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=92.58 E-value=3.5 Score=34.60 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhccC--CCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~~~--~~~~~vV~N~~~~ 217 (398)
.+.+.|.|+++..............+|.++++... +..|+..+...++.+.... ...+.+|.|+.+.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35567888876433222111123456888888764 4557777776666655432 2245677898653
No 389
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.57 E-value=2 Score=35.95 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=37.8
Q ss_pred CCCcEEEEcCCCCCChh---------h--hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDI---------Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~---------~--~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+..++.++|||+..... . .....+..+|.+++++.............++.+...+.+ +.+++|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence 34568899998732210 0 011113456888888887554333334455555555555 4577899653
No 390
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=92.53 E-value=0.18 Score=44.78 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
..+|+|+ +-.|+||||+|..|...|... +|.+|-+|-.-.
T Consensus 8 ~iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 8 VIIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred eEEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 4678876 666889999999999998754 899999988654
No 391
>PRK06893 DNA replication initiation factor; Validated
Probab=92.35 E-value=0.19 Score=45.44 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.+.++ +.-|+|||+++..+|..+.++|.+|..+.++
T Consensus 41 ~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34444 7889999999999999999999999998885
No 392
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.34 E-value=0.18 Score=43.12 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
||+.|.++ +-.|+||||++..||..| |. .++|.|..
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~~ 36 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQW 36 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccHH
Confidence 56677776 777999999999999887 44 35687763
No 393
>PRK08006 replicative DNA helicase; Provisional
Probab=92.29 E-value=0.2 Score=50.34 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~ 83 (398)
-+.|.++.-|+|||++|.|+|..+|. +|++|+++-+.-
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM 263 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 44455689999999999999999984 699999998875
No 394
>PRK04328 hypothetical protein; Provisional
Probab=92.23 E-value=0.26 Score=45.16 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.++.|. +--|+|||+++.++++.-+++|.+++++.++-.
T Consensus 23 gs~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 4566665 667799999999999998889999999999763
No 395
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.23 E-value=2.2 Score=35.96 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=34.2
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHH-hcc------CCCeeEEEEcccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL------KVPCIAVVENMCHFD 218 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l-~~~------~~~~~~vV~N~~~~~ 218 (398)
+-+.++|+|+...........+..+|.++++..... .++..+....+.+ ... +.+ +.+|.|+.+..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 345688997643222222222445788888887643 3444444433322 221 333 45777986543
No 396
>COG1159 Era GTPase [General function prediction only]
Probab=92.22 E-value=1.6 Score=40.53 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
-.|++. ++-.|||||+.-+| .|.++.++---+|..- .. +. |+. .
T Consensus 7 GfVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR-~~-----------------I~-----GI~--t---- 50 (298)
T COG1159 7 GFVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTR-NR-----------------IR-----GIV--T---- 50 (298)
T ss_pred EEEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhh-hh-----------------ee-----EEE--E----
Confidence 356776 89999999997654 4789998877666321 00 00 000 0
Q ss_pred CCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCChhh--------hhhhhhcCCCeEEEEeCCChhhHHHHHHH
Q 015892 125 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKG 196 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~~~~--------~~~~~~~a~d~viiv~~p~~~s~~~~~~~ 196 (398)
.+++-+|++|||+-..+-. .....+..+|.++.+++.+..--.+-...
T Consensus 51 ------------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i 106 (298)
T COG1159 51 ------------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI 106 (298)
T ss_pred ------------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH
Confidence 1677899999987443311 01111446799999998877444455666
Q ss_pred HHHHhccCCCeeEEEEccccc
Q 015892 197 VRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 197 ~~~l~~~~~~~~~vV~N~~~~ 217 (398)
++.++..+.+. -+++|+++.
T Consensus 107 l~~lk~~~~pv-il~iNKID~ 126 (298)
T COG1159 107 LEQLKKTKTPV-ILVVNKIDK 126 (298)
T ss_pred HHHHhhcCCCe-EEEEEcccc
Confidence 77777755564 456698653
No 397
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=92.20 E-value=2.6 Score=41.78 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=39.1
Q ss_pred CCcEEEEcCCCCCCh---------hh--hhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGD---------IQ--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~---------~~--~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
...+.|+|||+-... .. .....+..+|.+++|++.+..-...-.+.+..+...+.+ +-+|+|+++.
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl 295 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDL 295 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECccc
Confidence 346899999863211 00 011124567999999987654333334555666555655 5678899754
No 398
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=92.20 E-value=1.2 Score=37.85 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHH-HHHHHHhcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~-~~~~~l~~~--~~~~~~vV~N~~~~ 217 (398)
..+.+.|.|||+.-....+....+..+|.++++...+ ..|+..+. ..+..+... +.+ +.+|.|+.+.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhh
Confidence 4567899999875432222222244678888888764 34555553 244444432 333 5778898654
No 399
>PTZ00035 Rad51 protein; Provisional
Probab=92.19 E-value=0.37 Score=46.27 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~ 83 (398)
+.++.++ +.-|+||||++..++..... .+.+|+.||...
T Consensus 118 G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 118 GSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4566665 78899999999999877652 456899999864
No 400
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.11 E-value=0.53 Score=47.68 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDlD~ 83 (398)
+.++.|. +--|+||||+|.+++..-+++ |.+++.|.++.
T Consensus 21 g~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 21 GRSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4566665 777999999999999886665 99999999974
No 401
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=92.11 E-value=3.9 Score=34.47 Aligned_cols=67 Identities=6% Similarity=0.028 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhc--cCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~--~~~~~~~vV~N~~~~ 217 (398)
..+.+.+.|+|+...........+..+|.+++|.+.+.. ++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 456788999986543222212224567889998887543 45555544444432 2334 5588899653
No 402
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.02 E-value=0.21 Score=46.33 Aligned_cols=35 Identities=29% Similarity=0.219 Sum_probs=26.3
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+..|--|+||||+|..|+..|...|.+|.+|+-|.
T Consensus 5 il~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 34478899999999999999999999999999554
No 403
>PRK04040 adenylate kinase; Provisional
Probab=92.02 E-value=0.23 Score=43.46 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHH
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
||++|+|+ +--|+||||++..|+..|.
T Consensus 1 ~~~~i~v~-G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 1 MMKVVVVT-GVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCeEEEEE-eCCCCCHHHHHHHHHHHhc
Confidence 46778777 6678999999999999885
No 404
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=91.99 E-value=3.3 Score=34.51 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHH-HHhcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVR-MFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~-~l~~~--~~~~~~vV~N~~~~ 217 (398)
....+.|+|+|+...........+..++.+++++..+.. ++......+. .++.. ....+-+|.|+.+.
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl 112 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDM 112 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCC
Confidence 346788999997544322222224567889999887654 3333333332 23322 12246778899653
No 405
>PRK05748 replicative DNA helicase; Provisional
Probab=91.98 E-value=0.21 Score=50.10 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q 84 (398)
-+.+.++.-|+|||+++.|+|...|. .|++|+++-+.-.
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34455688899999999999999884 6999999987764
No 406
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.91 E-value=0.13 Score=43.93 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.|.+++.. |+||||+...||..|... .+|.|-
T Consensus 2 ~~~IvLiG~m-GaGKSTIGr~LAk~L~~~-----F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFM-GAGKSTIGRALAKALNLP-----FIDTDQ 35 (172)
T ss_pred CccEEEEcCC-CCCHhHHHHHHHHHcCCC-----cccchH
Confidence 3445555444 899999999999988543 678776
No 407
>PRK06921 hypothetical protein; Provisional
Probab=91.86 E-value=0.24 Score=45.95 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC-CCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~-G~rVllIDl 81 (398)
..-+.++ +.-|+|||+++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4556666 667999999999999999988 999998875
No 408
>PRK06904 replicative DNA helicase; Validated
Probab=91.79 E-value=0.23 Score=50.00 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~ 83 (398)
-+.|.++.-|+|||+++.|+|...|. .|++|+++-+.-
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEM 260 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 260 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 34455689999999999999999985 599999998775
No 409
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.78 E-value=3.8 Score=34.38 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=35.4
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChh-hHHHHHHHHHHHhcc---CCCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~---~~~~~~vV~N~~~~ 217 (398)
+.+.++|+|+...........+..+|.++++.+.+.. ++..+...+..+... +.+ ..+|.|+.+.
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 4577889986432222111224467888888876543 444444444444432 333 4577898654
No 410
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.78 E-value=0.37 Score=46.30 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHH----C--CCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAG----M--GARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~----~--G~rVllIDlD~ 83 (398)
..|+-..+.-|+|||+++.+||...+. . +.+|+.||..-
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 345555588899999999999976652 1 36999999965
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.78 E-value=0.17 Score=44.16 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+|+|. +..|+||||+|..|+..+. .+.+|.+|-.
T Consensus 1 ii~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 1 IVGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 35555 7789999999999998862 4677777753
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.78 E-value=0.28 Score=49.63 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
-.+.+.++--|+||||++.++++..+++|.+|+.+-++..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 3555666888999999999999999999999999998874
No 413
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.75 E-value=0.25 Score=44.83 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
..+.++ +.-|+|||+++..+|..+.+.|++|..+.++.
T Consensus 46 ~~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 345555 77799999999999999998999999998875
No 414
>PRK08840 replicative DNA helicase; Provisional
Probab=91.68 E-value=0.26 Score=49.45 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~ 83 (398)
-+.|.++.-|+|||+++.|+|...|. +|++|+++-+.-
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEM 256 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEM 256 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 44555689999999999999999984 699999998875
No 415
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.63 E-value=0.18 Score=40.82 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=30.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHC-----CCcEEEEEecCCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 85 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~-----G~rVllIDlD~q~ 85 (398)
+.+..+..|+|||+++.+++..+... ..+|+.+++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 34445888999999999999999864 6788888887755
No 416
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.62 E-value=0.19 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=24.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHH--------HHCCCcEEEEE
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 80 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~L--------a~~G~rVllID 80 (398)
++++++--|+||||+.+.++..+ ...+.+++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67777888999999999999988 35567777653
No 417
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.58 E-value=0.28 Score=51.44 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=36.6
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..++++|.+. +.-|+||||+|..|+..|...|..+.++|-|.-.
T Consensus 457 ~~~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r 500 (632)
T PRK05506 457 GQKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVR 500 (632)
T ss_pred CCCcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhh
Confidence 3456677665 7789999999999999999889999999998743
No 418
>PLN00023 GTP-binding protein; Provisional
Probab=91.58 E-value=11 Score=36.01 Aligned_cols=91 Identities=9% Similarity=-0.055 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC--------------CCeeEEEEcc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--------------VPCIAVVENM 214 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~--------------~~~~~vV~N~ 214 (398)
..+.+-|.|+++.-....+...-+..++.+|+|...+ ..++..+...++.+.... .-.+.+|.|+
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 3567888999864332222122244678888887754 456667777776666431 1236788899
Q ss_pred ccccCCCc--eecccCCChHHHHHHHhC
Q 015892 215 CHFDADGK--RYYPFGRGSGSQVVQQFG 240 (398)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~~~~~~~~g 240 (398)
++...... .......+..++++++.|
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQG 188 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcC
Confidence 77543211 000012345666777766
No 419
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.56 E-value=0.38 Score=42.29 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+++|+|. +--|+||||++..|+..|...|..|...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 5678887 5668999999999999999888776654
No 420
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=91.52 E-value=0.43 Score=46.48 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
+.+|.|++. -|+||||++..|...|..+ ++|.++.-+..
T Consensus 5 ~~~i~i~G~-~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFCGY-SGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEEeC-CCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 578999855 5889999999999999999 99999976553
No 421
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.36 E-value=0.44 Score=43.76 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=34.9
Q ss_pred cCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCc--EEEEEecCC
Q 015892 41 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVY 84 (398)
Q Consensus 41 ~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~r--VllIDlD~q 84 (398)
.+.+-||+++ +-=||||||+|..|+..|++.+.. |-+|=+|..
T Consensus 79 ~~~pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 79 QQRPFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CCCCEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 4456677776 677999999999999999998765 888888864
No 422
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.33 E-value=0.25 Score=48.31 Aligned_cols=44 Identities=32% Similarity=0.379 Sum_probs=37.1
Q ss_pred ccccccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcE
Q 015892 32 FAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 76 (398)
Q Consensus 32 ~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rV 76 (398)
+.+++.+++...++=|.++ +--|.||||.|..||..++.+|+=|
T Consensus 251 L~dkl~eRL~eraeGILIA-G~PGaGKsTFaqAlAefy~~~GkiV 294 (604)
T COG1855 251 LSDKLKERLEERAEGILIA-GAPGAGKSTFAQALAEFYASQGKIV 294 (604)
T ss_pred CCHHHHHHHHhhhcceEEe-cCCCCChhHHHHHHHHHHHhcCcEE
Confidence 4557788888888888887 5668999999999999999999844
No 423
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.29 E-value=4.9 Score=33.90 Aligned_cols=82 Identities=9% Similarity=0.070 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhc----cCCCeeEEEEccccccCCCcee
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 224 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~~~~~~~~ 224 (398)
..+++.++|+|+...........+..++.++++++... .++......+..+.+ .+.+ +.++.|+++....
T Consensus 56 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~---- 130 (173)
T cd04155 56 DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA---- 130 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC----
Confidence 34678889987643221111111345677888877643 234443433333221 2344 4566798653221
Q ss_pred cccCCChHHHHHHHhCC
Q 015892 225 YPFGRGSGSQVVQQFGI 241 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~g~ 241 (398)
...+++.+.++.
T Consensus 131 -----~~~~~i~~~l~~ 142 (173)
T cd04155 131 -----APAEEIAEALNL 142 (173)
T ss_pred -----CCHHHHHHHcCC
Confidence 224566666653
No 424
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=91.27 E-value=0.72 Score=46.51 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=38.8
Q ss_pred eEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccC
Q 015892 45 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 93 (398)
Q Consensus 45 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~ 93 (398)
|-|.|+++ -.|.||=.+|+.|+..|..+|++|..+-+||.-|--+..+.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~Gtms 51 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMS 51 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCC
Confidence 44444433 56889999999999999999999999999998765554443
No 425
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=91.26 E-value=0.49 Score=44.63 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=54.9
Q ss_pred EEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccCCChHH
Q 015892 154 YLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGS 233 (398)
Q Consensus 154 ~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~ 233 (398)
|--+|||+-.+..--.....+.+|.+|+|+....--+-.++.-+-+.++.+++.+.+.+|+++.-...+.. ..-.-.++
T Consensus 119 YaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~l-eLVEmE~R 197 (449)
T KOG0460|consen 119 YAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEML-ELVEMEIR 197 (449)
T ss_pred cccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHH-HHHHHHHH
Confidence 45579987444322222223457999999988877777888877788889999999999997654322110 11111345
Q ss_pred HHHHHhCC
Q 015892 234 QVVQQFGI 241 (398)
Q Consensus 234 ~~~~~~g~ 241 (398)
++...||.
T Consensus 198 ElLse~gf 205 (449)
T KOG0460|consen 198 ELLSEFGF 205 (449)
T ss_pred HHHHHcCC
Confidence 55666653
No 426
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=91.25 E-value=0.47 Score=45.00 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCCChhhhhhh-hhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccccCCCceecccC
Q 015892 150 GELDYLVIDMPPGTGDIQLTLC-QVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 228 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~-~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~~~~~~~ 228 (398)
..-+|||.|||+ -...+.++. ..+.||.+|+.+..-.-=+..++|-.-...-++++.+.+-+|+.+.-.-.+..|..-
T Consensus 84 ~KRkFIiADTPG-HeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPG-HEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred ccceEEEecCCc-HHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 445799999986 444444332 234578899999886655566666555556679999999999976543222222111
Q ss_pred CChHHHHHHHhCCCeEEecCCCh
Q 015892 229 RGSGSQVVQQFGIPHLFDLPIRP 251 (398)
Q Consensus 229 ~~~~~~~~~~~g~~~~~~ip~~~ 251 (398)
......+++.+|......||.+.
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSA 185 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechh
Confidence 22344456666777777788764
No 427
>PRK06321 replicative DNA helicase; Provisional
Probab=91.19 E-value=0.31 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q 84 (398)
-+.|.++.-|+|||+++.|+|..+| +.|++|+++-+.-.
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3455568999999999999999998 46999999987763
No 428
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.15 E-value=0.24 Score=48.98 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=44.4
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+.|+|||+--.........+..+|.+++|+.....-.....+.+..+..++.+.+-+++|+++.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 56689999999732221111223557899999999765433344555666667777767788999764
No 429
>PRK13947 shikimate kinase; Provisional
Probab=91.09 E-value=0.36 Score=41.22 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.|.+. +-.|+||||++..||..| |.+ ++|.|.
T Consensus 3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 45555 777999999999999887 444 477776
No 430
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.08 E-value=0.39 Score=44.60 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++|+=|+ +-.|+||||+|.+++....+.|.+|+.||.--
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 6777787 66789999999999999999999999999865
No 431
>PTZ00301 uridine kinase; Provisional
Probab=91.08 E-value=0.45 Score=42.40 Aligned_cols=39 Identities=28% Similarity=0.599 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHH-CCC-cEEEEEecCC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGA-RVGIFDADVY 84 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~-rVllIDlD~q 84 (398)
.+|++. +-.|+||||+|..|+..|.. .|- .|+++=+|-.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 677776 66688999999999988854 343 3556666654
No 432
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=91.04 E-value=2 Score=38.44 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhccC-CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK-VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~~-~~~~~vV~N~~~~ 217 (398)
..+.+-|.|+++.-....+...-+..++.++++...+ ..++..+...++.+.... .-.+.+|.|+.+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhh
Confidence 3467888999864332221111134567778887765 455666666555554332 1235677898654
No 433
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.04 E-value=0.46 Score=45.65 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~q 84 (398)
.|....+.-|+|||+++.++|...+. .+.+|+.||..-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 44444589999999999999976542 2248999999864
No 434
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=91.02 E-value=4.3 Score=34.17 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc-------CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL-------KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~-------~~~~~~vV~N~~~~ 217 (398)
..+.+.|.|+|+.-....+....+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+.+.
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDI 126 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccc
Confidence 3466788999864322222111234568888777654 44566665554443321 223 5678898654
No 435
>COG1160 Predicted GTPases [General function prediction only]
Probab=90.99 E-value=3.2 Score=40.84 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccCCcccccccCCCCCceeeeccCCeEEEecccC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 124 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vlp~~~~ 124 (398)
.+|+++ ++--|||||+=-.|+ |.|+.+|+==| |-+-+. +...
T Consensus 4 ~~VAIV-GRPNVGKSTLFNRL~------g~r~AIV~D~p-GvTRDr-----------------~y~~------------- 45 (444)
T COG1160 4 PVVAIV-GRPNVGKSTLFNRLT------GRRIAIVSDTP-GVTRDR-----------------IYGD------------- 45 (444)
T ss_pred CEEEEE-CCCCCcHHHHHHHHh------CCeeeEeecCC-CCccCC-----------------ccce-------------
Confidence 688888 899999999865444 57888876444 211111 0000
Q ss_pred CCcccccCCccHHHHHHHHHhhccCCCCcEEEEcCCCCCC-h---hh-----hhhhhhcCCCeEEEEeCCChhhHHHHHH
Q 015892 125 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-D---IQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAK 195 (398)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIID~pp~~~-~---~~-----~~~~~~~a~d~viiv~~p~~~s~~~~~~ 195 (398)
.++....+.+|||++-.. . +. .+..++..||.++.|++....=...=..
T Consensus 46 ----------------------~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ 103 (444)
T COG1160 46 ----------------------AEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEE 103 (444)
T ss_pred ----------------------eEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 013566689999986431 1 11 1122245689999998875422222234
Q ss_pred HHHHHhccCCCeeEEEEccccc
Q 015892 196 GVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 196 ~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+.+.+...+.+ +-+|+|++..
T Consensus 104 ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 104 IAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred HHHHHHhcCCC-EEEEEEcccC
Confidence 45566644455 5567799653
No 436
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=90.97 E-value=6.1 Score=32.59 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred CcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc----CCCeeEEEEccccc
Q 015892 152 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 217 (398)
Q Consensus 152 yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~----~~~~~~vV~N~~~~ 217 (398)
+.+-|+|+|+.-....+....+..++.++++...+ ..++..+...+..+... +.+ +-+|.|+++.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34567898764332222111234567777776654 34555655555544432 333 5678899654
No 437
>PLN02348 phosphoribulokinase
Probab=90.88 E-value=0.5 Score=45.93 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCC---------------CcEEEEEecCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVYG 85 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G---------------~rVllIDlD~q~ 85 (398)
+.+.+|+|. +-.|+||||+|..|+..|...+ ..|.+|-+|-..
T Consensus 47 ~~p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 345677776 7779999999999999997542 467788777643
No 438
>PRK13946 shikimate kinase; Provisional
Probab=90.83 E-value=0.32 Score=42.27 Aligned_cols=35 Identities=40% Similarity=0.407 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.+.|.+. +-.|+||||++..||..| |.+ .+|.|.
T Consensus 9 ~~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 9 GKRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 34567766 667999999999999888 554 577774
No 439
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=90.83 E-value=1.8 Score=36.63 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=38.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHHHHHHHHHhcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~~~~~~~l~~~--~~~~~~vV~N~~~~ 217 (398)
..+.+.+.|+++.-....+....+..+|.++++...+ ..++..+...+..+... +.+ +.+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl 116 (166)
T cd00877 47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDI 116 (166)
T ss_pred EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhc
Confidence 4567889999764322111111234578888888874 34555555555555443 344 4577898654
No 440
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.70 E-value=1.5 Score=46.60 Aligned_cols=67 Identities=21% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~---~-----~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
..+.+.++|||+.... . ......+..+|.+++|++....-...-..+.+.++..+.+ +.+|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 4566888999874321 0 0111124467999999887542111122455666666665 4567798653
No 441
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.69 E-value=0.4 Score=49.44 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH-CCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~rVllIDlD~q 84 (398)
+.+|.++ +--|+||||++..||..|.. .|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 5577665 77899999999999999987 7888999999853
No 442
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=90.67 E-value=0.35 Score=42.48 Aligned_cols=34 Identities=41% Similarity=0.491 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++|+++ +.=|+||||++..|+. .|. -++|+|-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~ 34 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADA 34 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecH
Confidence 57788888 6668999999987775 354 5688886
No 443
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.62 E-value=0.38 Score=42.50 Aligned_cols=34 Identities=41% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
||++|+++ ++=|+||||+|--+ ++.|.. +||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~~~----~~~G~~--vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKIL----AELGFP--VIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHHH----HHcCCe--EEEccH
Confidence 68999999 77799999998644 445554 577775
No 444
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=90.60 E-value=2.1 Score=42.49 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=36.5
Q ss_pred eEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCc
Q 015892 45 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 90 (398)
Q Consensus 45 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~ 90 (398)
|-|.|+++ =.|.||=.+|+.||..|..+|++|-++-+||.-|--+.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpG 48 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPG 48 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCC
Confidence 34444432 45789999999999999999999999999998654433
No 445
>PRK09165 replicative DNA helicase; Provisional
Probab=90.59 E-value=0.35 Score=49.03 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHC---------------CCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~---------------G~rVllIDlD~q 84 (398)
-+.+.++.-|+||||++.|+|...|++ |.+|+++-+.-.
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 345556889999999999999999853 788998877653
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=90.59 E-value=0.26 Score=41.56 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
+|+ .|++-|+||||+|.-||..+.
T Consensus 2 ~It-IsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VIT-ISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEE-eccCCCCChhHHHHHHHHHhC
Confidence 455 469999999999999988774
No 447
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.58 E-value=0.21 Score=41.07 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 48 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 48 ~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
.++.+.-|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 34557789999999998876653 66788887
No 448
>PRK05636 replicative DNA helicase; Provisional
Probab=90.55 E-value=0.4 Score=48.67 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 84 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q 84 (398)
-+.+.++.-|+|||+++.|+|...| +.|++|+++-+.-.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 3445568899999999999999988 56899999877763
No 449
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=90.54 E-value=0.38 Score=54.13 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
...++|+++ +.||+||||+|..++..+..+-.-.+.+|
T Consensus 205 ~~~~vvgI~-G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 205 EEVRMVGIW-GSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred CceEEEEEE-cCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 346899988 89999999999999988876533334554
No 450
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=90.54 E-value=0.34 Score=42.11 Aligned_cols=29 Identities=31% Similarity=0.206 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 55 GVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 55 GvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
|+||||++..|+..|...|++ .++..-+.
T Consensus 6 GsGKtT~~~~L~~~l~~~~~~-~~~~~~~~ 34 (186)
T PF02223_consen 6 GSGKTTQIRLLAEALKEKGYK-VIITFPPG 34 (186)
T ss_dssp TSSHHHHHHHHHHHHHHTTEE-EEEEESST
T ss_pred CCCHHHHHHHHHHHHHHcCCc-ccccCCCC
Confidence 899999999999999999999 55555553
No 451
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=90.53 E-value=0.38 Score=41.31 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
++.+.|. +..|+|||++...+...+++.+.-++.++++..
T Consensus 24 ~~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4555555 778999999999999999987545888999886
No 452
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=90.51 E-value=0.35 Score=46.79 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHH--HHCCCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~L--a~~G~rVllIDlD~ 83 (398)
|.+.|+.+--|+|||.++.+||..| ...+.+++++-...
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 3566777889999999999999999 66777776655443
No 453
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.41 E-value=0.5 Score=44.35 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
++.+|. .++-.|+||||+|..||..| |..+ +|-.|.
T Consensus 91 ~p~iIl-I~G~sgsGKStlA~~La~~l---~~~~-vi~~D~ 126 (301)
T PRK04220 91 EPIIIL-IGGASGVGTSTIAFELASRL---GIRS-VIGTDS 126 (301)
T ss_pred CCEEEE-EECCCCCCHHHHHHHHHHHh---CCCE-EEechH
Confidence 455555 45888999999999999888 4443 344554
No 454
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=90.32 E-value=0.45 Score=42.60 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=48.9
Q ss_pred HHhcCCCccceeEEeeecCCCCcccccccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHH-----CCCcEEEEEecC
Q 015892 9 VVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADV 83 (398)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~-----~G~rVllIDlD~ 83 (398)
.++++..|..+|+++.-+..-.. ++|.+-+=+.+..=+..-+.-||||||+-..+|..++. .++||.+||--.
T Consensus 103 ~vkt~rdI~slniRv~r~v~Gt~--~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 103 KVKTIRDISSLNIRVARQVFGTA--NPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred cccceeeeceeeeeehhhhhccc--hHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc
Confidence 35666777778888876542111 11333333344442444478899999999999999993 489999999654
No 455
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=90.24 E-value=5.9 Score=37.94 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCCh-------hhhhhhhhcCCCeEEEEeCCChh----hHHHHHHHHHHHhccC----CCeeEEEEcccc
Q 015892 152 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKLK----VPCIAVVENMCH 216 (398)
Q Consensus 152 yD~VIID~pp~~~~-------~~~~~~~~~a~d~viiv~~p~~~----s~~~~~~~~~~l~~~~----~~~~~vV~N~~~ 216 (398)
+.++|+|+|+-... .....-.+..++.+++|++.+.. ++..+....+.+.... .....+|.|+++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 56899999864321 11111123457888999887753 4455555555554431 233558889976
Q ss_pred c
Q 015892 217 F 217 (398)
Q Consensus 217 ~ 217 (398)
.
T Consensus 285 L 285 (329)
T TIGR02729 285 L 285 (329)
T ss_pred C
Confidence 4
No 456
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.20 E-value=1 Score=38.00 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHH-HHHHHhccC-CCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAK-GVRMFSKLK-VPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~-~~~~l~~~~-~~~~~vV~N~~~~ 217 (398)
..+.+.++|+|+...........+..+|.++++..++. .+...... .+..+.... ...+.+|.|+.+.
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHh
Confidence 45678899998744322211112345788999988865 44444433 233333322 2235677898653
No 457
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=90.20 E-value=7.8 Score=33.48 Aligned_cols=68 Identities=9% Similarity=-0.057 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCC-hhhHHHH-HHHHHHHhccCC-CeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDV-AKGVRMFSKLKV-PCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~-~~s~~~~-~~~~~~l~~~~~-~~~~vV~N~~~~ 217 (398)
..+.+-|.||++.-....+....+..+|.++++...+ ..|+..+ ...++.+..... ..+.+|.|+.+.
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhh
Confidence 3466788888764222222222244678888887764 4566665 455555554321 235678898764
No 458
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=90.16 E-value=0.67 Score=41.16 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
+++.|+|=+. =|+||||.+..|+..|..+|.+|++.
T Consensus 2 ~g~fI~iEGi-DGaGKTT~~~~L~~~l~~~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIEGI-DGAGKTTQAELLKERLEERGIKVVLT 37 (208)
T ss_pred CceEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5678888744 48899999999999999999988775
No 459
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.04 E-value=0.3 Score=40.71 Aligned_cols=32 Identities=38% Similarity=0.338 Sum_probs=24.1
Q ss_pred EEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 49 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 49 v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
+..+--|+||||+|..|+..+ ...++|.|.-.
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccc
Confidence 455888999999999998874 23567877643
No 460
>PRK06851 hypothetical protein; Provisional
Probab=90.01 E-value=1.2 Score=43.23 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCC
Q 015892 42 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 89 (398)
Q Consensus 42 ~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~ 89 (398)
...+++. ..+.-|+||||+...++..+.++|++|.+.=+-..-.+++
T Consensus 212 ~~~~~~~-i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD 258 (367)
T PRK06851 212 GVKNRYF-LKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLD 258 (367)
T ss_pred ccceEEE-EeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcc
Confidence 3345554 4577899999999999999999999999986644333443
No 461
>PRK13695 putative NTPase; Provisional
Probab=89.99 E-value=0.64 Score=39.91 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEE
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 77 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVl 77 (398)
.|++. +..|+||||+...++..+...|.++.
T Consensus 2 ~i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34555 77899999999999998887888764
No 462
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.83 E-value=0.35 Score=42.63 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEec
Q 015892 46 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 82 (398)
Q Consensus 46 vI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD 82 (398)
.+.+..+..|+||||+|..||..+ |..+ ++.-|
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D 36 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGD 36 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhH
Confidence 345556999999999999998875 4443 44444
No 463
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.79 E-value=0.46 Score=45.03 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH------CCCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~------~G~rVllIDlD~q 84 (398)
+.++-|+ +.-|+||||++.++|...+. .+.+|+.||..-.
T Consensus 95 g~i~ei~-G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVF-GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 4455554 78899999999999988763 2339999999764
No 464
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=89.70 E-value=0.35 Score=43.72 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=24.6
Q ss_pred ccCCC-eEEEEEcCCCCChHHHHHHHHHHHHH
Q 015892 40 LQKIS-NIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 40 ~~~~~-kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
..+|+ ..|.+.++-.||||||+|..+|..|.
T Consensus 83 ir~~~~p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 83 IRKMKRPLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred HhccCCCeEEEecCCCCCChhHHHHHHHHHcC
Confidence 34444 57777889999999999999998774
No 465
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=89.44 E-value=0.85 Score=40.41 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..++|+|.+. -|+||||+..+++..+. .+.+|.++..|+.
T Consensus 21 ~~~~i~~~G~-~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFMSS-PGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEECC-CCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 4678888854 58999999999998775 3579999998874
No 466
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=89.35 E-value=0.48 Score=45.09 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHC------CCcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~------G~rVllIDlD~q 84 (398)
+.++-|+ +.-|+|||+++.++|...+.. +.+|+.||.+..
T Consensus 102 g~vtei~-G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEFY-GEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 4455554 788999999999999887643 358999999863
No 467
>PLN02748 tRNA dimethylallyltransferase
Probab=89.33 E-value=0.62 Score=46.57 Aligned_cols=43 Identities=33% Similarity=0.376 Sum_probs=32.5
Q ss_pred cccccccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 35 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 35 ~~~~~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+-+....++.++|+|+ +--|+|||++|..||..+ ..-+|.+|.
T Consensus 13 ~~~~~~~~~~~~i~i~-GptgsGKs~la~~la~~~-----~~eii~~Ds 55 (468)
T PLN02748 13 EGSPKQKGKAKVVVVM-GPTGSGKSKLAVDLASHF-----PVEIINADS 55 (468)
T ss_pred CCCcccCCCCCEEEEE-CCCCCCHHHHHHHHHHhc-----CeeEEcCch
Confidence 3345566677888887 677999999999999876 356788875
No 468
>PLN02327 CTP synthase
Probab=89.33 E-value=1.2 Score=45.12 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=38.9
Q ss_pred eEEEEEcC-CCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccC
Q 015892 45 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 93 (398)
Q Consensus 45 kvI~v~s~-KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~ 93 (398)
|-|.|+++ -.|.||=.+|+.|+..|..+|++|..+-+||.-|--+..+.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~Gtms 51 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMS 51 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCC
Confidence 44555433 56889999999999999999999999999998765444433
No 469
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=89.26 E-value=0.52 Score=47.53 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHHHHHHHHHHHhccCCCeeEEEEcccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 218 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~~~~~~~~~l~~~~~~~~~vV~N~~~~~ 218 (398)
+.+.++|||||+--.........+..+|.+++|+.....-.....+.+..+..++.+.+.+++|+++..
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 567899999997322211122224577999999987543222233445555566766667889997643
No 470
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.61 Score=43.82 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHH----CCCcEEEEEecCCCCCCCcccCCc
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPE 95 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~----~G~rVllIDlD~q~~~~~~~l~~~ 95 (398)
-.|+|.+. +--|+|||+++-.||+.|+- +-++..+|..... +..+.||+..
T Consensus 176 ~NRliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsES 230 (423)
T KOG0744|consen 176 WNRLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSES 230 (423)
T ss_pred eeeEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehh-HHHHHHHhhh
Confidence 34667666 66799999999999999983 2456778887763 3445555543
No 471
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=89.24 E-value=0.43 Score=46.41 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=28.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEE
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 79 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllI 79 (398)
..|.++.||+|||++.-.|...+...|+.|+++
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 456789999999999999999998877777664
No 472
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=89.24 E-value=1.1 Score=40.92 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=36.0
Q ss_pred eEEEEEc-CCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcccC
Q 015892 45 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 93 (398)
Q Consensus 45 kvI~v~s-~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~l~ 93 (398)
|-|.|++ -=.|.||=.+|+.+|..|..+|++|.++-+||.-|--+..+.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~Gtms 51 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMS 51 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCC
Confidence 4455554 367899999999999999999999999999998765544443
No 473
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=89.13 E-value=0.68 Score=44.05 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHH---CC---CcEEEEEecCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 84 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~---~G---~rVllIDlD~q 84 (398)
+.++.++ +.-|+||||++.+++...+. .| .+|+.||....
T Consensus 96 g~i~~i~-G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEIF-GEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEEE-CCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 4555555 78899999999999974432 33 58999998764
No 474
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=89.12 E-value=0.27 Score=41.64 Aligned_cols=25 Identities=44% Similarity=0.400 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 55 GVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 55 GvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
|+||||++..||..|.. -++|+|-.
T Consensus 2 GsGKStvg~~lA~~L~~-----~fiD~D~~ 26 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLGR-----PFIDLDDE 26 (158)
T ss_dssp TSSHHHHHHHHHHHHTS-----EEEEHHHH
T ss_pred CCcHHHHHHHHHHHhCC-----CccccCHH
Confidence 89999999999999853 48899873
No 475
>PRK07004 replicative DNA helicase; Provisional
Probab=89.11 E-value=0.51 Score=47.42 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=31.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHH-HCCCcEEEEEecCC
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 84 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La-~~G~rVllIDlD~q 84 (398)
+.|.++.-|+|||+++.|+|..+| +.|++|+++-+.-.
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 445568899999999999999988 46999999977764
No 476
>PRK13975 thymidylate kinase; Provisional
Probab=89.11 E-value=0.49 Score=41.37 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHH
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 70 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La 70 (398)
|++.|+|. +--|+||||++..||..|.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 56778877 6668999999999999884
No 477
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.01 E-value=0.36 Score=38.66 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=17.8
Q ss_pred EcCCCCChHHHHHHHHHHHH
Q 015892 50 SSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 50 ~s~KGGvGKTT~a~nLA~~L 69 (398)
.++.-|+||||+|..|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45778999999999999998
No 478
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=88.95 E-value=7.7 Score=32.61 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHHHHHHHhc----cCCCeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~~~~~l~~----~~~~~~~vV~N~~~~ 217 (398)
.+.+.|+|+|+......+....+..++.++++... +..++..+....+.+.. .+.++ -++.|+.+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~D~ 118 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKADL 118 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCE-EEEEEChhc
Confidence 35677889876433222211123355666666554 44466666555444432 23454 467898643
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=88.88 E-value=0.68 Score=47.21 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.++.|. +--|+|||+++.+++...+++|.+|+++.++-
T Consensus 273 g~~~li~-G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILVS-GATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 4556654 78899999999999999999999999999875
No 480
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=88.76 E-value=0.6 Score=48.86 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=29.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEE
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 80 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~rVllID 80 (398)
++++.+.-|+||||+++.+...+.++|++|+++-
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4556688899999999999999999999999975
No 481
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=88.70 E-value=1.7 Score=38.56 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=35.7
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHH-HHHHHHHhccC--CCeeEEEEcccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKLK--VPCIAVVENMCHFD 218 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~-~~~~~~l~~~~--~~~~~vV~N~~~~~ 218 (398)
.+++.++|+++-.....+...-...++.++++..... .+...+ ....+.+.... .-.+.+|.|+.+..
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 4567788887643321111111335567777776654 444433 34444555544 23467778886543
No 482
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=88.67 E-value=5.1 Score=34.23 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCC-ChhhHHHHHH-HHHHHhcc--CCCeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAK-GVRMFSKL--KVPCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p-~~~s~~~~~~-~~~~l~~~--~~~~~~vV~N~~~~ 217 (398)
..+.+.|.|+++.-.........+..+|.++++... +..++..+.. .++.+... +.+ +.+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl 117 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDL 117 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 347788999986433222222224467888888875 4456666653 44455433 333 5678898653
No 483
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=88.66 E-value=0.49 Score=37.11 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=19.2
Q ss_pred cCCCCChHHHHHHHHHHHHHHC
Q 015892 51 SCKGGVGKSTVAVNLAYTLAGM 72 (398)
Q Consensus 51 s~KGGvGKTT~a~nLA~~La~~ 72 (398)
.+..|+|||++|..||..+.+.
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHHH
Confidence 3667999999999999999864
No 484
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=88.53 E-value=6.1 Score=34.06 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHHHHHhccCC-CeeEEEEccccc
Q 015892 151 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV-PCIAVVENMCHF 217 (398)
Q Consensus 151 ~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~~~l~~~~~-~~~~vV~N~~~~ 217 (398)
.+.+-|.|+++.-.........+..+|.++++.+.+. .++..+...++.+..... ...-+|.|+++.
T Consensus 48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl 116 (182)
T cd04128 48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDL 116 (182)
T ss_pred EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 4677888987643322222222446788888887644 466666666666554321 122367898654
No 485
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.33 E-value=0.97 Score=39.09 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=31.2
Q ss_pred cccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 39 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 39 ~~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
....++.++.++ +. |=||||-|..+|....-.|+||+++=+
T Consensus 24 ~~~~~Gli~V~T-G~-GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 24 ATEEKGLIIVFT-GN-GKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred cccccCeEEEEe-cC-CCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 333445566555 33 669999999999999999999999855
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=88.31 E-value=0.47 Score=41.77 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 85 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~ 85 (398)
..++.++.+-.|+||||++..+...+. +...+.||.|.-.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHH
Confidence 355666668889999999998877766 5678889998843
No 487
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=88.30 E-value=0.48 Score=44.54 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|.+ .+.-|+||||+|..|+..+. ....+|.|.
T Consensus 1 m~~liil-~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 1 MMKIILT-VGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred CcEEEEE-EcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 4455555 58889999999999988762 456777665
No 488
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=88.20 E-value=0.98 Score=43.81 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCChhhHH-------HHHHHHHHHhccCCCeeEEEEccccccCCCc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFDADGK 222 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~~s~~-------~~~~~~~~l~~~~~~~~~vV~N~~~~~~~~~ 222 (398)
+.|-+-|||||+--....-.......||.+++|+.....++. .++.-+-+.+.+|++.+-+.+|+.+...-.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 678899999998443332223335578999999988766432 2333344556678998999999965443111
Q ss_pred eecccCCChHHHHHHHhCCCe--EEecCCC
Q 015892 223 RYYPFGRGSGSQVVQQFGIPH--LFDLPIR 250 (398)
Q Consensus 223 ~~~~~~~~~~~~~~~~~g~~~--~~~ip~~ 250 (398)
..|..-+.....+.+.+|... +..||.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiS 192 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPIS 192 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecc
Confidence 111111222333555666542 3345543
No 489
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.16 E-value=0.5 Score=40.01 Aligned_cols=30 Identities=37% Similarity=0.426 Sum_probs=23.2
Q ss_pred EcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCC
Q 015892 50 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 84 (398)
Q Consensus 50 ~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q 84 (398)
..+--|+||||+|..|+..+ | ..++|.|..
T Consensus 3 l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 34778999999999999887 3 445677764
No 490
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=88.16 E-value=0.88 Score=40.33 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEe
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 81 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDl 81 (398)
|+++.++ +--|+|||.+|+.||..+ |-.|+..|-
T Consensus 1 M~v~~i~-GpT~tGKt~~ai~lA~~~---g~pvI~~Dr 34 (233)
T PF01745_consen 1 MKVYLIV-GPTGTGKTALAIALAQKT---GAPVISLDR 34 (233)
T ss_dssp -EEEEEE--STTSSHHHHHHHHHHHH-----EEEEE-S
T ss_pred CcEEEEE-CCCCCChhHHHHHHHHHh---CCCEEEecc
Confidence 6788888 556899999999999877 567776664
No 491
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.13 E-value=0.79 Score=36.80 Aligned_cols=29 Identities=34% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 52 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 52 ~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.-|+||||++..+|..+ |..++-+|+..
T Consensus 5 G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp SSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred CcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 666999999999999987 45666665544
No 492
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=88.11 E-value=6.6 Score=35.26 Aligned_cols=68 Identities=9% Similarity=-0.051 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCCChhhhhhhhhcCCCeEEEEeCCCh-hhHHHHHHHH-HHHhccCC-CeeEEEEccccc
Q 015892 150 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSKLKV-PCIAVVENMCHF 217 (398)
Q Consensus 150 ~~yD~VIID~pp~~~~~~~~~~~~~a~d~viiv~~p~~-~s~~~~~~~~-~~l~~~~~-~~~~vV~N~~~~ 217 (398)
..+.+.|.||++.-....+....+..+|.++++...+. .++..+...+ ..+..... -.+.+|.|+++.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL 117 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccc
Confidence 34677888998643322222222446788888888644 5566654333 23333221 235678898654
No 493
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=88.10 E-value=0.77 Score=48.73 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 86 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~ 86 (398)
+.++-+ .+--|+||||++.+++...+++|.+|+.||......
T Consensus 60 GsiteI-~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~ 101 (790)
T PRK09519 60 GRVIEI-YGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD 101 (790)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence 344444 478899999999999999889999999999887543
No 494
>PRK12338 hypothetical protein; Provisional
Probab=88.03 E-value=0.5 Score=44.71 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHH
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTL 69 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~L 69 (398)
.+|. .++-.|+||||+|..||..+
T Consensus 5 ~ii~-i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 5 YVIL-IGSASGIGKSTIASELARTL 28 (319)
T ss_pred EEEE-EECCCCCCHHHHHHHHHHHC
Confidence 4554 55888999999999998887
No 495
>PRK03003 GTP-binding protein Der; Reviewed
Probab=88.01 E-value=3 Score=42.10 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=27.1
Q ss_pred hcCCCeEEEEeCCChh-hHHHHHHHHHHHhccCCCeeEEEEccccc
Q 015892 173 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 217 (398)
Q Consensus 173 ~~a~d~viiv~~p~~~-s~~~~~~~~~~l~~~~~~~~~vV~N~~~~ 217 (398)
+..+|.+++|+..+.. +..+. ..+..+...+.+ +.+|+|+++.
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~p-iIiV~NK~Dl 334 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRA-LVLAFNKWDL 334 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-EEEEEECccc
Confidence 3467899999887653 33333 445555555555 5677899764
No 496
>PRK13949 shikimate kinase; Provisional
Probab=87.89 E-value=0.57 Score=40.16 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 45 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 45 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
+.|.++ +--|+||||++..||..|. .-.+|+|.
T Consensus 2 ~~I~li-G~~GsGKstl~~~La~~l~-----~~~id~D~ 34 (169)
T PRK13949 2 ARIFLV-GYMGAGKTTLGKALARELG-----LSFIDLDF 34 (169)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHcC-----CCeecccH
Confidence 456666 5568999999999998873 23567664
No 497
>PRK06851 hypothetical protein; Provisional
Probab=87.87 E-value=1.5 Score=42.49 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecCCCCCCCcc
Q 015892 44 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 91 (398)
Q Consensus 44 ~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~q~~~~~~~ 91 (398)
.+.+.+..+--|+||||+...++..+.++|++|-.+=+....++++.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slDgv 76 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGV 76 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCceeeE
Confidence 344455668889999999999999999999998888555554566655
No 498
>PLN02165 adenylate isopentenyltransferase
Probab=87.86 E-value=0.61 Score=44.41 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=27.6
Q ss_pred ccCCCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 40 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 40 ~~~~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
....+++|+++ +--|+||||+|..||..+. .-+|++|.
T Consensus 39 ~~~~g~iivIi-GPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 39 QNCKDKVVVIM-GATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred cCCCCCEEEEE-CCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 34456677777 6679999999999988763 23667664
No 499
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=87.69 E-value=0.67 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHHHHHCCCcEEEEEecC
Q 015892 43 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 83 (398)
Q Consensus 43 ~~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~rVllIDlD~ 83 (398)
|+++|+++ +.-|+|||++|..||..+ .+.+|.+|.
T Consensus 3 ~~~~i~i~-GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIV-GPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred CceEEEEE-CCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 45666655 778999999999999875 344666665
No 500
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=87.53 E-value=0.71 Score=40.89 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=23.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHHCCC--cEEEE
Q 015892 47 VAVSSCKGGVGKSTVAVNLAYTLAGMGA--RVGIF 79 (398)
Q Consensus 47 I~v~s~KGGvGKTT~a~nLA~~La~~G~--rVllI 79 (398)
+.+..++-|+|||++|...|..+...|. |++++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5566699999999999999998877653 44444
Done!