Query 015893
Match_columns 398
No_of_seqs 143 out of 222
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v46_A Cell division control p 100.0 5.9E-63 2E-67 447.2 15.4 156 233-396 12-168 (170)
2 2lo0_A Uncharacterized protein 45.9 9.6 0.00033 29.6 2.0 19 377-395 35-53 (75)
3 3ctr_A Poly(A)-specific ribonu 30.8 14 0.00046 30.3 0.7 25 329-353 17-41 (101)
4 4h0a_A Uncharacterized protein 27.5 37 0.0013 32.9 3.3 31 312-342 88-119 (323)
5 1qzu_A Hypothetical protein MD 23.4 38 0.0013 30.7 2.3 35 233-267 131-170 (206)
6 1whv_A Poly(A)-specific ribonu 21.8 12 0.00039 30.7 -1.3 24 330-353 28-51 (100)
7 1g63_A Epidermin modifying enz 20.6 43 0.0015 29.7 2.1 35 233-267 106-145 (181)
8 1p3y_1 MRSD protein; flavoprot 19.6 41 0.0014 30.2 1.7 35 233-267 114-153 (194)
9 1sbz_A Probable aromatic acid 19.2 56 0.0019 29.4 2.5 35 233-267 113-149 (197)
10 3zqu_A Probable aromatic acid 19.0 52 0.0018 29.9 2.3 34 234-267 131-166 (209)
No 1
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=100.00 E-value=5.9e-63 Score=447.25 Aligned_cols=156 Identities=35% Similarity=0.642 Sum_probs=147.5
Q ss_pred CCCcEEEecCCcccccchhhHHHHhhcCCccCChhhhhccCCCCCceEEEEeeecCCCCCeeeEEEEEcCCCCC-CCCCC
Q 015893 233 EGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTM-KSEDW 311 (398)
Q Consensus 233 ~~~PIIivPsa~tslitm~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~~-~~~dW 311 (398)
.++||||||+++||||||+|||+|||||+||++++..+ +.+++|+|+|++++ .+.+++|+||||+.+| +||||
T Consensus 12 ~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~----~~~~~v~I~r~~~~--~~~~~~f~VVD~~~~~tkpe~W 85 (170)
T 3v46_A 12 RKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPS----VPNGLVNIEKNFER--ISRPIRFIIVDNTRMFTKPEYW 85 (170)
T ss_dssp CSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCC----CTTSEEEEEECCTT--SSSCEEEEEESSSTTCCSGGGG
T ss_pred CCCCEEEECCCccchhhHHHHHHHHhcCeecChhhccc----CCCCeEEEEEecCC--CCcceEEEEEEChHHcCCccCC
Confidence 57999999999999999999999999999999998642 24679999999864 3579999999999999 69999
Q ss_pred CeEEEEEeeCCccccCCCCCCCHHHHhccccEEEEEeCCCCCCchhcccccceEEEEeCCCCccccHHHHHHHHHHHHHH
Q 015893 312 DRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLEEF 391 (398)
Q Consensus 312 ~RVVAVFv~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~D~~~~~~FW~~le~~ 391 (398)
+|||||||+|++||||+|||++|++||++||||||+|+|+++|+ +|++|||++|.|+|+|||+|++++++||+.||+|
T Consensus 86 ~RVVAVFv~G~~WQFk~w~~~~P~elF~~v~Gf~~~~~~~~~p~--~v~~WnV~~l~l~r~kRh~D~~~~~~FW~~Le~~ 163 (170)
T 3v46_A 86 DRVVAIFTTGHTWQFNNYQWNSPQELFQRCKGYYFHFAGDSVPQ--HVQQWNVEKVELDKNKRFKDVEVVRYFWHSLEKE 163 (170)
T ss_dssp GGEEEEECCSCGGGGTTSSSCSHHHHHHHSEEEEEEETTSCCCH--HHHHSSEEEEEECSSCCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeECchhhcCCCCCCChHHHhccceEEEEEecCCCCCh--hHhhCCCEEEEeCcCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHhcc
Q 015893 392 VRSRS 396 (398)
Q Consensus 392 ~~~r~ 396 (398)
|++|+
T Consensus 164 m~~rg 168 (170)
T 3v46_A 164 LISRG 168 (170)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 99997
No 2
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=45.93 E-value=9.6 Score=29.60 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHhc
Q 015893 377 DRAAALEVWDRLEEFVRSR 395 (398)
Q Consensus 377 D~~~~~~FW~~le~~~~~r 395 (398)
+.-...+||+.|+.||..|
T Consensus 35 ~vl~TeeFW~DL~gFL~qR 53 (75)
T 2lo0_A 35 SVVATEAFWDDLQGFLEQR 53 (75)
T ss_dssp TTTTSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh
Confidence 4445679999999999876
No 3
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=30.81 E-value=14 Score=30.34 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCCCCHHHHhccccEEEEEeCCCCC
Q 015893 329 WPFKDHVEIFNKIIGFYMRFEDDSV 353 (398)
Q Consensus 329 w~~~~p~~lF~~v~gf~~~~~~~~~ 353 (398)
|+=.|...||+.+.||++.|-||..
T Consensus 17 wKt~Di~~lFs~fggv~I~WidDTs 41 (101)
T 3ctr_A 17 WKTSDLYQLFSAFGNIQISWIDDTS 41 (101)
T ss_dssp CCHHHHHHHTTTSEEEEEEEEETTE
T ss_pred hhhHHHHHHHhccCCEEEEEEcCCe
Confidence 3345899999999999999998864
No 4
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=27.51 E-value=37 Score=32.87 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=26.1
Q ss_pred CeEEEEEeeCCccccCCCCCCC-HHHHhcccc
Q 015893 312 DRVVAVFVLGKEWQFKEWPFKD-HVEIFNKII 342 (398)
Q Consensus 312 ~RVVAVFv~G~~WQFk~w~~~~-p~~lF~~v~ 342 (398)
++||+||++|..|..+++..+. -.++|++..
T Consensus 88 ~kVv~iy~~g~~~~~~p~~iG~s~~~v~~~~~ 119 (323)
T 4h0a_A 88 EEIVSVYATGEKVNVSPLKIGQHSAEIFNHTS 119 (323)
T ss_dssp TEEEEEEEESSSCCCTTCCTTSBGGGTTTSCC
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhcC
Confidence 8999999999999999988875 446877753
No 5
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=23.38 E-value=38 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCCcc-CChh
Q 015893 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~t----slitm~NiK~FLe~g~fv-~~~~ 267 (398)
.+.||||+|+..+ ..++.-|++.+-+.|.++ ||..
T Consensus 131 ~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 170 (206)
T 1qzu_A 131 RSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 170 (206)
T ss_dssp TTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCcc
Confidence 4689999997653 678899999999988754 4544
No 6
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=21.78 E-value=12 Score=30.70 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.7
Q ss_pred CCCCHHHHhccccEEEEEeCCCCC
Q 015893 330 PFKDHVEIFNKIIGFYMRFEDDSV 353 (398)
Q Consensus 330 ~~~~p~~lF~~v~gf~~~~~~~~~ 353 (398)
+=.|...||+.+.||++.|-||..
T Consensus 28 Kt~DI~~lFs~fggv~I~WidDTs 51 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQISWIDDTS 51 (100)
T ss_dssp CHHHHHHHHTTTCSCCCEEEETTE
T ss_pred hhHHHHHHhhccCCEEEEEEcCCe
Confidence 345899999999999999998764
No 7
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=20.62 E-value=43 Score=29.69 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCCcc-CChh
Q 015893 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~t----slitm~NiK~FLe~g~fv-~~~~ 267 (398)
.+.|+||+|+..+ +.++.-|+...-+.|.++ ||..
T Consensus 106 ~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 145 (181)
T 1g63_A 106 GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (181)
T ss_dssp TGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 3689999998864 578899999999988754 4544
No 8
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=19.58 E-value=41 Score=30.16 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHhhcCCcc-CChh
Q 015893 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~t----slitm~NiK~FLe~g~fv-~~~~ 267 (398)
.+.|+||+|+..+ +.++.-|+..+-+.|.++ ||..
T Consensus 114 ~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 153 (194)
T 1p3y_1 114 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 153 (194)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred cCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4689999998543 678899999999988754 4544
No 9
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=19.21 E-value=56 Score=29.44 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.3
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHhhcCCcc-CChh
Q 015893 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (398)
Q Consensus 233 ~~~PIIivPsa~-tslitm~NiK~FLe~g~fv-~~~~ 267 (398)
.+.|+||+|+.+ ...+++-|+...-+.|.++ ||..
T Consensus 113 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 149 (197)
T 1sbz_A 113 EGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMP 149 (197)
T ss_dssp HTCEEEEEECCSSBCHHHHHHHHHHHTTTCEECCCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCC
Confidence 358999999965 3679999999999988654 4444
No 10
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=19.05 E-value=52 Score=29.92 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=27.2
Q ss_pred CCcEEEecCCc-ccccchhhHHHHhhcCCc-cCChh
Q 015893 234 GVPIILVPSAS-QTLITIYNVKEFLEDGVY-IPTDV 267 (398)
Q Consensus 234 ~~PIIivPsa~-tslitm~NiK~FLe~g~f-v~~~~ 267 (398)
+.|+||+|+.+ .+.+++-|+...-+.|.. +||..
T Consensus 131 ~~plvl~Paem~~~~~~~~Nm~~L~~~G~~iipp~~ 166 (209)
T 3zqu_A 131 RRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAP 166 (209)
T ss_dssp TCCEEEEECCSSCCHHHHHHHHHHHHHTCEECCSCC
T ss_pred CCcEEEEEcccccCHHHHHHHHHHHHCCCEEeCCCc
Confidence 68999999965 378999999999988864 45544
Done!