Query 015894
Match_columns 398
No_of_seqs 151 out of 1162
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:54:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02746 hydroxymethylglutaryl 100.0 1.1E-76 2.3E-81 590.9 37.1 333 66-398 15-347 (347)
2 PRK05692 hydroxymethylglutaryl 100.0 4.5E-72 9.8E-77 547.5 37.4 287 94-380 1-287 (287)
3 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 9.4E-68 2E-72 514.1 34.7 273 100-372 1-273 (274)
4 KOG2368 Hydroxymethylglutaryl- 100.0 2.8E-67 6.1E-72 483.9 26.6 304 83-386 4-307 (316)
5 PRK11858 aksA trans-homoaconit 100.0 6.5E-65 1.4E-69 514.6 34.3 284 95-398 2-288 (378)
6 TIGR02660 nifV_homocitr homoci 100.0 2.2E-64 4.9E-69 508.6 33.6 281 98-398 2-285 (365)
7 PRK00915 2-isopropylmalate syn 100.0 7E-64 1.5E-68 524.4 34.5 287 94-398 1-299 (513)
8 TIGR02090 LEU1_arch isopropylm 100.0 8.7E-64 1.9E-68 503.9 33.8 281 98-398 1-284 (363)
9 PLN03228 methylthioalkylmalate 100.0 5.1E-63 1.1E-67 513.1 33.2 286 95-398 82-391 (503)
10 TIGR00973 leuA_bact 2-isopropy 100.0 6.8E-63 1.5E-67 514.4 33.8 284 97-398 1-296 (494)
11 PRK09389 (R)-citramalate synth 100.0 1.1E-62 2.3E-67 512.0 33.5 283 97-398 2-286 (488)
12 PLN02321 2-isopropylmalate syn 100.0 1.9E-62 4.1E-67 519.4 34.7 285 95-398 84-392 (632)
13 cd07945 DRE_TIM_CMS Leptospira 100.0 1.9E-62 4.2E-67 478.1 30.3 274 101-386 1-280 (280)
14 COG0119 LeuA Isopropylmalate/h 100.0 2.1E-62 4.6E-67 498.1 28.4 284 97-398 2-293 (409)
15 PRK12344 putative alpha-isopro 100.0 3.8E-61 8.1E-66 504.2 35.3 286 93-398 1-303 (524)
16 TIGR00977 LeuA_rel 2-isopropyl 100.0 4.6E-61 9.9E-66 503.2 35.0 287 97-398 1-300 (526)
17 TIGR00970 leuA_yeast 2-isoprop 100.0 9.7E-61 2.1E-65 504.3 33.2 293 94-398 23-336 (564)
18 PRK03739 2-isopropylmalate syn 100.0 1.8E-60 3.8E-65 501.2 33.8 291 94-398 27-337 (552)
19 PRK14847 hypothetical protein; 100.0 1.8E-59 4E-64 463.1 33.9 292 84-389 22-331 (333)
20 cd07939 DRE_TIM_NifV Streptomy 100.0 1.9E-57 4E-62 438.3 31.1 254 100-373 1-258 (259)
21 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 7.6E-57 1.7E-61 436.1 30.3 254 100-372 1-267 (268)
22 cd07948 DRE_TIM_HCS Saccharomy 100.0 9.3E-56 2E-60 427.4 31.1 258 98-373 1-262 (262)
23 cd03174 DRE_TIM_metallolyase D 100.0 9.5E-55 2.1E-59 417.2 33.0 262 101-372 1-264 (265)
24 cd07942 DRE_TIM_LeuA Mycobacte 100.0 4.2E-55 9.1E-60 426.6 29.8 262 99-373 3-284 (284)
25 KOG2367 Alpha-isopropylmalate 100.0 3E-54 6.5E-59 431.2 29.1 287 94-398 54-353 (560)
26 cd07947 DRE_TIM_Re_CS Clostrid 100.0 1E-53 2.2E-58 416.3 31.2 255 98-372 1-278 (279)
27 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 1.9E-53 4E-58 411.4 32.8 250 98-373 1-260 (263)
28 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 1.5E-53 3.2E-58 414.4 31.5 258 100-373 1-273 (273)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 3E-52 6.6E-57 405.7 29.0 249 100-375 1-269 (275)
30 PRK08195 4-hyroxy-2-oxovalerat 100.0 1.5E-50 3.3E-55 403.8 34.1 254 96-376 2-267 (337)
31 PRK12330 oxaloacetate decarbox 100.0 6.4E-51 1.4E-55 421.2 32.1 277 94-397 1-310 (499)
32 PRK12331 oxaloacetate decarbox 100.0 1.3E-50 2.8E-55 416.6 32.4 253 96-375 2-274 (448)
33 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 1.5E-50 3.3E-55 392.0 30.3 249 100-375 1-260 (266)
34 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 4.6E-50 1E-54 399.6 34.5 254 96-375 1-265 (333)
35 PRK14041 oxaloacetate decarbox 100.0 5.7E-50 1.2E-54 412.8 31.9 252 97-375 2-273 (467)
36 PRK09282 pyruvate carboxylase 100.0 1.2E-48 2.6E-53 414.3 32.9 272 96-395 2-295 (592)
37 PF00682 HMGL-like: HMGL-like 100.0 1.7E-49 3.7E-54 376.8 23.7 232 106-354 1-237 (237)
38 PRK14040 oxaloacetate decarbox 100.0 7E-48 1.5E-52 407.9 32.9 257 94-375 1-275 (593)
39 TIGR01108 oadA oxaloacetate de 100.0 3.7E-48 7.9E-53 409.6 30.6 250 100-376 1-270 (582)
40 PRK12581 oxaloacetate decarbox 100.0 2.3E-47 5E-52 391.7 32.2 261 94-379 9-287 (468)
41 PRK14042 pyruvate carboxylase 100.0 4.4E-46 9.5E-51 393.0 31.2 252 97-375 3-274 (596)
42 PRK12999 pyruvate carboxylase; 100.0 2.4E-44 5.3E-49 404.6 33.8 262 96-378 531-814 (1146)
43 TIGR02146 LysS_fung_arch homoc 100.0 7.1E-42 1.5E-46 340.5 32.0 280 100-398 1-282 (344)
44 COG5016 Pyruvate/oxaloacetate 100.0 5.1E-43 1.1E-47 345.9 19.0 253 96-375 4-276 (472)
45 TIGR01235 pyruv_carbox pyruvat 100.0 1.8E-41 3.8E-46 380.3 28.8 258 96-376 529-810 (1143)
46 COG1038 PycA Pyruvate carboxyl 100.0 4.9E-31 1.1E-35 276.6 16.7 257 96-375 534-814 (1149)
47 KOG0369 Pyruvate carboxylase [ 100.0 2.9E-28 6.2E-33 251.7 15.5 264 93-379 556-843 (1176)
48 TIGR02146 LysS_fung_arch homoc 98.6 1.8E-14 3.9E-19 143.7 -41.9 140 249-398 111-268 (344)
49 PRK07028 bifunctional hexulose 98.3 1.9E-05 4.2E-10 81.8 16.8 170 115-322 12-188 (430)
50 TIGR00423 radical SAM domain p 98.3 0.00016 3.5E-09 71.7 22.1 228 114-356 34-298 (309)
51 TIGR03699 mena_SCO4550 menaqui 98.3 0.00015 3.3E-09 72.8 21.2 224 114-356 70-329 (340)
52 PRK07094 biotin synthase; Prov 98.2 0.00032 6.8E-09 69.8 21.8 200 115-328 69-284 (323)
53 TIGR03551 F420_cofH 7,8-dideme 98.2 0.00018 3.8E-09 72.6 20.1 226 114-356 68-334 (343)
54 TIGR03700 mena_SCO4494 putativ 98.0 0.00092 2E-08 67.7 21.7 229 115-356 78-340 (351)
55 TIGR00262 trpA tryptophan synt 98.0 0.00062 1.3E-08 66.1 19.2 175 116-321 21-224 (256)
56 PRK06256 biotin synthase; Vali 98.0 0.0042 9.1E-08 62.2 24.7 219 115-357 90-324 (336)
57 PRK08445 hypothetical protein; 98.0 0.0014 3.1E-08 66.3 21.3 223 114-355 71-333 (348)
58 PLN02389 biotin synthase 97.9 0.0065 1.4E-07 62.3 26.0 218 115-357 115-354 (379)
59 PRK07360 FO synthase subunit 2 97.9 0.0012 2.7E-08 67.2 20.7 219 113-356 88-356 (371)
60 PRK09240 thiH thiamine biosynt 97.9 0.0018 4E-08 66.0 21.0 265 55-357 61-359 (371)
61 PRK13125 trpA tryptophan synth 97.9 0.0038 8.3E-08 60.0 21.4 177 115-321 14-211 (244)
62 CHL00200 trpA tryptophan synth 97.9 0.0015 3.2E-08 63.8 18.7 175 116-321 26-228 (263)
63 PLN02591 tryptophan synthase 97.9 0.0029 6.2E-08 61.4 20.4 175 116-321 13-215 (250)
64 PRK08444 hypothetical protein; 97.9 0.0015 3.3E-08 66.3 19.3 227 114-356 78-339 (353)
65 PRK15108 biotin synthase; Prov 97.8 0.017 3.6E-07 58.5 26.6 219 115-357 75-312 (345)
66 TIGR00433 bioB biotin syntheta 97.7 0.023 5E-07 55.5 25.3 219 115-354 61-295 (296)
67 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.0014 3E-08 60.9 15.6 167 116-323 9-185 (206)
68 PRK06552 keto-hydroxyglutarate 97.7 0.0053 1.1E-07 58.1 19.5 152 116-321 22-180 (213)
69 TIGR02351 thiH thiazole biosyn 97.7 0.004 8.7E-08 63.4 20.0 224 114-357 101-358 (366)
70 PRK09613 thiH thiamine biosynt 97.7 0.014 3.1E-07 61.4 23.6 226 114-356 113-379 (469)
71 PRK05718 keto-hydroxyglutarate 97.6 0.0043 9.2E-08 58.7 17.4 148 116-317 24-176 (212)
72 TIGR01182 eda Entner-Doudoroff 97.5 0.013 2.8E-07 55.2 19.0 152 116-321 17-173 (204)
73 PRK09196 fructose-1,6-bisphosp 97.5 0.018 3.9E-07 58.3 20.0 208 107-324 15-277 (347)
74 PRK05927 hypothetical protein; 97.4 0.011 2.5E-07 59.9 18.3 225 114-356 74-335 (350)
75 cd04726 KGPDC_HPS 3-Keto-L-gul 97.4 0.016 3.4E-07 53.4 17.8 165 116-322 10-184 (202)
76 PRK07315 fructose-bisphosphate 97.4 0.029 6.3E-07 55.6 20.5 192 115-325 25-233 (293)
77 PRK07084 fructose-bisphosphate 97.4 0.026 5.6E-07 56.6 20.1 195 115-323 31-267 (321)
78 PF01081 Aldolase: KDPG and KH 97.4 0.0069 1.5E-07 56.7 14.8 153 116-321 17-173 (196)
79 PRK08508 biotin synthase; Prov 97.4 0.13 2.8E-06 50.4 24.4 215 116-356 40-273 (279)
80 cd04724 Tryptophan_synthase_al 97.4 0.0093 2E-07 57.3 16.0 171 117-321 12-212 (242)
81 PRK13111 trpA tryptophan synth 97.3 0.02 4.3E-07 55.8 18.3 147 116-290 23-199 (258)
82 PRK06015 keto-hydroxyglutarate 97.3 0.042 9E-07 51.7 19.2 150 116-319 13-167 (201)
83 cd00019 AP2Ec AP endonuclease 97.3 0.036 7.7E-07 53.7 19.6 225 122-373 13-278 (279)
84 TIGR00126 deoC deoxyribose-pho 97.3 0.022 4.7E-07 53.9 17.4 181 113-324 12-204 (211)
85 PRK05926 hypothetical protein; 97.3 0.022 4.8E-07 58.3 18.5 225 113-355 96-360 (370)
86 PF00290 Trp_syntA: Tryptophan 97.2 0.036 7.8E-07 54.0 18.4 174 115-321 20-223 (259)
87 cd00945 Aldolase_Class_I Class 97.2 0.098 2.1E-06 47.2 20.3 171 117-321 11-198 (201)
88 TIGR03550 F420_cofG 7,8-dideme 97.2 0.047 1E-06 54.6 19.7 229 113-356 32-296 (322)
89 PRK08185 hypothetical protein; 97.2 0.13 2.7E-06 50.9 22.2 196 107-323 10-227 (283)
90 TIGR01521 FruBisAldo_II_B fruc 97.2 0.055 1.2E-06 54.8 20.0 199 115-324 23-275 (347)
91 TIGR01859 fruc_bis_ald_ fructo 97.2 0.081 1.8E-06 52.2 20.7 191 115-324 23-230 (282)
92 PRK13399 fructose-1,6-bisphosp 97.2 0.064 1.4E-06 54.4 20.2 200 115-324 25-277 (347)
93 PRK06801 hypothetical protein; 97.1 0.083 1.8E-06 52.3 20.4 188 115-324 25-233 (286)
94 TIGR02109 PQQ_syn_pqqE coenzym 97.1 0.26 5.6E-06 49.7 24.5 139 114-267 35-179 (358)
95 TIGR01163 rpe ribulose-phospha 97.1 0.18 3.9E-06 46.5 21.2 174 116-323 8-192 (210)
96 COG0159 TrpA Tryptophan syntha 97.1 0.034 7.4E-07 54.3 16.7 155 116-297 28-210 (265)
97 TIGR01496 DHPS dihydropteroate 97.0 0.19 4.1E-06 48.9 21.7 198 100-321 5-239 (257)
98 PRK09234 fbiC FO synthase; Rev 97.0 0.042 9.2E-07 61.8 19.1 226 113-355 554-820 (843)
99 PRK05835 fructose-bisphosphate 97.0 0.14 3.1E-06 51.0 20.8 191 115-323 24-254 (307)
100 PRK09856 fructoselysine 3-epim 97.0 0.08 1.7E-06 51.0 18.8 198 121-356 15-241 (275)
101 cd00947 TBP_aldolase_IIB Tagat 97.0 0.15 3.2E-06 50.3 20.5 190 115-324 20-226 (276)
102 PRK07709 fructose-bisphosphate 97.0 0.21 4.5E-06 49.4 21.4 190 115-323 25-232 (285)
103 PRK06245 cofG FO synthase subu 97.0 0.12 2.5E-06 51.9 20.2 229 115-356 40-300 (336)
104 cd00452 KDPG_aldolase KDPG and 97.0 0.15 3.2E-06 47.0 19.2 154 117-322 14-169 (190)
105 PRK08610 fructose-bisphosphate 96.9 0.16 3.5E-06 50.2 20.4 190 115-323 25-232 (286)
106 cd00959 DeoC 2-deoxyribose-5-p 96.9 0.11 2.3E-06 48.6 18.3 178 115-324 13-203 (203)
107 COG0826 Collagenase and relate 96.9 0.029 6.2E-07 57.0 15.4 108 172-300 13-121 (347)
108 PTZ00413 lipoate synthase; Pro 96.9 0.063 1.4E-06 54.9 17.4 144 114-269 175-331 (398)
109 PLN02428 lipoic acid synthase 96.9 0.097 2.1E-06 53.2 18.7 160 98-269 111-283 (349)
110 PRK12928 lipoyl synthase; Prov 96.9 0.025 5.4E-07 56.0 14.2 162 114-285 85-266 (290)
111 PRK07998 gatY putative fructos 96.9 0.15 3.3E-06 50.4 19.5 189 115-323 25-228 (283)
112 PRK07114 keto-hydroxyglutarate 96.9 0.065 1.4E-06 51.1 16.4 152 116-321 24-185 (222)
113 PRK12738 kbaY tagatose-bisphos 96.9 0.26 5.7E-06 48.8 21.2 189 115-323 25-231 (286)
114 PF01116 F_bP_aldolase: Fructo 96.9 0.061 1.3E-06 53.2 16.7 190 115-323 24-234 (287)
115 PRK15452 putative protease; Pr 96.8 0.02 4.3E-07 60.0 13.8 112 166-297 4-115 (443)
116 PRK13210 putative L-xylulose 5 96.8 0.19 4.1E-06 48.4 19.8 203 122-356 19-248 (284)
117 PRK12857 fructose-1,6-bisphosp 96.8 0.24 5.2E-06 49.0 20.4 189 115-323 25-231 (284)
118 PRK13397 3-deoxy-7-phosphohept 96.8 0.26 5.7E-06 47.8 20.2 182 116-326 26-223 (250)
119 PRK12737 gatY tagatose-bisphos 96.8 0.25 5.4E-06 48.9 20.4 198 107-324 15-232 (284)
120 TIGR01858 tag_bisphos_ald clas 96.8 0.29 6.3E-06 48.4 20.8 189 115-323 23-229 (282)
121 KOG3111 D-ribulose-5-phosphate 96.8 0.11 2.3E-06 48.5 16.4 180 124-352 22-215 (224)
122 PRK00507 deoxyribose-phosphate 96.8 0.18 3.9E-06 48.0 18.7 180 114-324 17-208 (221)
123 TIGR00167 cbbA ketose-bisphosp 96.8 0.27 5.8E-06 48.7 20.5 190 115-323 25-235 (288)
124 COG0502 BioB Biotin synthase a 96.8 0.34 7.3E-06 49.0 21.2 222 114-358 82-320 (335)
125 cd00958 DhnA Class I fructose- 96.8 0.024 5.3E-07 53.7 12.7 189 113-324 15-214 (235)
126 PRK09195 gatY tagatose-bisphos 96.7 0.3 6.4E-06 48.3 19.8 189 115-323 25-231 (284)
127 PRK05301 pyrroloquinoline quin 96.7 0.34 7.3E-06 49.3 20.9 139 115-268 45-189 (378)
128 PRK09140 2-dehydro-3-deoxy-6-p 96.6 0.19 4E-06 47.4 17.5 155 116-322 19-177 (206)
129 PRK13398 3-deoxy-7-phosphohept 96.6 0.66 1.4E-05 45.4 21.8 180 117-325 39-234 (266)
130 TIGR03234 OH-pyruv-isom hydrox 96.6 0.46 9.9E-06 45.3 20.2 189 122-359 17-236 (254)
131 PRK11613 folP dihydropteroate 96.6 0.87 1.9E-05 45.0 22.3 168 98-287 18-205 (282)
132 TIGR01769 GGGP geranylgeranylg 96.6 0.23 5.1E-06 46.8 17.6 180 119-321 11-202 (205)
133 COG1060 ThiH Thiamine biosynth 96.5 0.18 3.8E-06 51.7 17.9 230 112-357 86-353 (370)
134 PRK09997 hydroxypyruvate isome 96.5 0.38 8.3E-06 46.1 19.4 186 122-356 18-234 (258)
135 COG2896 MoaA Molybdenum cofact 96.5 0.43 9.4E-06 47.9 20.0 144 115-272 42-193 (322)
136 PRK13361 molybdenum cofactor b 96.5 0.22 4.9E-06 49.8 18.1 137 115-264 44-186 (329)
137 PRK06806 fructose-bisphosphate 96.5 0.82 1.8E-05 45.2 21.6 191 115-325 25-231 (281)
138 cd04729 NanE N-acetylmannosami 96.5 0.25 5.5E-06 46.4 17.4 184 89-321 2-203 (219)
139 PF04481 DUF561: Protein of un 96.4 0.12 2.7E-06 48.9 14.5 175 115-321 23-211 (242)
140 PRK06267 hypothetical protein; 96.4 0.6 1.3E-05 47.4 20.6 214 115-352 62-289 (350)
141 PLN02951 Molybderin biosynthes 96.4 0.43 9.4E-06 48.9 19.6 164 115-291 89-264 (373)
142 cd00331 IGPS Indole-3-glycerol 96.3 0.71 1.5E-05 43.2 19.5 167 116-321 28-198 (217)
143 PRK09989 hypothetical protein; 96.3 0.3 6.5E-06 46.8 17.2 186 122-356 18-234 (258)
144 TIGR03470 HpnH hopanoid biosyn 96.3 0.34 7.3E-06 48.5 18.1 157 115-289 58-228 (318)
145 PRK13307 bifunctional formalde 96.3 0.17 3.6E-06 52.3 16.1 166 116-321 182-355 (391)
146 PRK09197 fructose-bisphosphate 96.3 0.85 1.8E-05 46.3 20.7 198 115-324 28-279 (350)
147 PTZ00170 D-ribulose-5-phosphat 96.3 0.64 1.4E-05 44.3 19.0 175 116-321 16-198 (228)
148 PRK01060 endonuclease IV; Prov 96.3 1.2 2.6E-05 43.0 21.3 203 121-355 14-251 (281)
149 TIGR00510 lipA lipoate synthas 96.2 0.11 2.3E-06 51.9 13.9 141 116-268 91-242 (302)
150 TIGR02320 PEP_mutase phosphoen 96.2 0.55 1.2E-05 46.5 18.7 211 125-355 22-263 (285)
151 PRK05481 lipoyl synthase; Prov 96.2 0.22 4.8E-06 49.2 15.9 143 115-267 79-230 (289)
152 PRK08005 epimerase; Validated 96.1 0.48 1E-05 44.9 17.1 167 119-323 13-190 (210)
153 PRK13753 dihydropteroate synth 96.1 1.6 3.5E-05 43.1 21.6 153 113-287 19-195 (279)
154 PRK09722 allulose-6-phosphate 96.1 0.23 5.1E-06 47.6 15.0 166 123-322 19-195 (229)
155 TIGR00735 hisF imidazoleglycer 96.1 1 2.2E-05 43.5 19.6 205 119-357 30-253 (254)
156 smart00518 AP2Ec AP endonuclea 96.0 1.5 3.3E-05 42.1 21.3 201 123-355 14-247 (273)
157 COG0191 Fba Fructose/tagatose 96.0 0.75 1.6E-05 45.4 18.3 227 107-366 15-263 (286)
158 COG1856 Uncharacterized homolo 96.0 1.5 3.3E-05 42.0 22.1 214 117-348 40-270 (275)
159 PRK07226 fructose-bisphosphate 96.0 0.38 8.2E-06 46.9 16.4 179 115-321 35-228 (267)
160 PF01791 DeoC: DeoC/LacD famil 96.0 0.055 1.2E-06 51.5 10.2 188 120-324 20-228 (236)
161 PLN02334 ribulose-phosphate 3- 96.0 1.5 3.2E-05 41.6 19.8 172 119-322 20-200 (229)
162 PRK08883 ribulose-phosphate 3- 95.9 0.5 1.1E-05 44.9 16.2 164 120-321 13-192 (220)
163 PLN02858 fructose-bisphosphate 95.9 0.93 2E-05 54.0 21.4 222 107-366 1111-1355(1378)
164 PRK01130 N-acetylmannosamine-6 95.8 1.7 3.6E-05 40.9 20.3 180 93-321 2-199 (221)
165 COG0274 DeoC Deoxyribose-phosp 95.8 1.5 3.3E-05 41.9 18.7 180 113-321 18-209 (228)
166 PRK07535 methyltetrahydrofolat 95.8 0.62 1.3E-05 45.4 16.7 183 116-319 22-223 (261)
167 TIGR00284 dihydropteroate synt 95.8 1.6 3.6E-05 46.4 20.9 174 119-325 165-352 (499)
168 TIGR02666 moaA molybdenum cofa 95.7 1.3 2.9E-05 44.1 19.4 166 115-291 42-219 (334)
169 PRK08745 ribulose-phosphate 3- 95.7 0.35 7.6E-06 46.1 14.3 168 120-321 17-196 (223)
170 PRK12595 bifunctional 3-deoxy- 95.7 1.5 3.2E-05 44.9 19.6 177 117-325 130-325 (360)
171 PRK07455 keto-hydroxyglutarate 95.7 1.8 3.9E-05 40.0 18.7 155 117-322 22-178 (187)
172 COG0036 Rpe Pentose-5-phosphat 95.7 0.91 2E-05 43.2 16.6 173 121-324 18-198 (220)
173 PRK08091 ribulose-phosphate 3- 95.6 0.7 1.5E-05 44.3 16.0 171 118-322 24-205 (228)
174 cd04740 DHOD_1B_like Dihydroor 95.6 0.32 7E-06 47.7 14.1 101 209-323 75-185 (296)
175 TIGR01949 AroFGH_arch predicte 95.6 0.32 7E-06 47.0 13.8 191 98-323 20-226 (258)
176 COG0800 Eda 2-keto-3-deoxy-6-p 95.6 0.31 6.8E-06 46.1 13.1 152 116-320 22-177 (211)
177 TIGR03586 PseI pseudaminic aci 95.6 1.4 3.1E-05 44.4 18.7 176 117-323 15-221 (327)
178 PRK00164 moaA molybdenum cofac 95.5 1.3 2.8E-05 44.1 18.4 137 115-264 48-190 (331)
179 PRK13396 3-deoxy-7-phosphohept 95.4 2 4.4E-05 43.8 19.4 221 116-385 112-351 (352)
180 COG0191 Fba Fructose/tagatose 95.4 0.15 3.3E-06 50.2 10.9 118 216-355 7-130 (286)
181 cd00946 FBP_aldolase_IIA Class 95.4 3.6 7.9E-05 41.8 21.9 198 115-324 23-275 (345)
182 PRK05283 deoxyribose-phosphate 95.3 0.92 2E-05 44.3 15.9 201 98-330 11-235 (257)
183 cd00453 FTBP_aldolase_II Fruct 95.3 2.2 4.7E-05 43.2 18.9 193 115-323 20-271 (340)
184 COG2513 PrpB PEP phosphonomuta 95.3 0.79 1.7E-05 45.3 15.3 210 123-355 29-257 (289)
185 TIGR01361 DAHP_synth_Bsub phos 95.3 1.5 3.2E-05 42.8 17.2 179 117-325 37-232 (260)
186 PRK00278 trpC indole-3-glycero 95.2 1.8 3.9E-05 42.1 17.8 165 114-321 65-237 (260)
187 PRK06852 aldolase; Validated 95.2 1.4 3.1E-05 44.0 17.2 131 177-322 120-263 (304)
188 cd00739 DHPS DHPS subgroup of 95.2 3.4 7.4E-05 40.2 22.4 200 100-322 6-242 (257)
189 TIGR02319 CPEP_Pphonmut carbox 95.1 0.95 2.1E-05 45.0 15.6 210 124-355 28-256 (294)
190 PRK09250 fructose-bisphosphate 95.1 1.2 2.5E-05 45.3 16.4 83 177-270 151-239 (348)
191 smart00729 Elp3 Elongator prot 95.1 1.3 2.9E-05 39.5 15.6 146 115-269 29-188 (216)
192 PRK14057 epimerase; Provisiona 95.1 0.57 1.2E-05 45.6 13.7 174 118-323 31-220 (254)
193 TIGR01210 conserved hypothetic 95.0 1.1 2.3E-05 44.8 16.0 147 117-269 47-209 (313)
194 TIGR03471 HpnJ hopanoid biosyn 95.0 0.88 1.9E-05 47.8 16.0 157 116-288 227-389 (472)
195 TIGR03849 arch_ComA phosphosul 95.0 0.45 9.8E-06 45.8 12.5 145 186-353 25-183 (237)
196 TIGR00539 hemN_rel putative ox 95.0 1.1 2.4E-05 45.4 16.1 142 116-267 32-186 (360)
197 cd00423 Pterin_binding Pterin 95.0 2.1 4.5E-05 41.5 17.3 134 115-267 20-171 (258)
198 TIGR01303 IMP_DH_rel_1 IMP deh 94.9 0.11 2.4E-06 54.9 9.0 78 248-331 224-301 (475)
199 COG0320 LipA Lipoate synthase 94.9 1.3 2.9E-05 43.5 15.5 139 112-269 93-249 (306)
200 cd01320 ADA Adenosine deaminas 94.9 2.2 4.9E-05 42.2 17.8 131 177-320 78-213 (325)
201 TIGR02317 prpB methylisocitrat 94.9 0.77 1.7E-05 45.4 14.2 206 125-355 26-252 (285)
202 PRK13209 L-xylulose 5-phosphat 94.9 4 8.6E-05 39.4 20.1 138 208-356 94-247 (283)
203 cd04740 DHOD_1B_like Dihydroor 94.8 3.9 8.4E-05 40.1 19.0 185 123-325 24-261 (296)
204 TIGR00542 hxl6Piso_put hexulos 94.7 2.3 4.9E-05 41.2 17.1 142 178-356 100-242 (279)
205 COG1082 IolE Sugar phosphate i 94.7 2.5 5.4E-05 40.2 17.2 204 123-356 19-244 (274)
206 PRK09234 fbiC FO synthase; Rev 94.7 4.3 9.4E-05 46.0 21.2 226 113-356 99-366 (843)
207 PRK08227 autoinducer 2 aldolas 94.7 1.9 4.2E-05 42.2 16.2 123 177-323 99-225 (264)
208 PRK12858 tagatose 1,6-diphosph 94.7 1.8 4E-05 43.9 16.5 136 177-319 111-269 (340)
209 PRK11320 prpB 2-methylisocitra 94.6 1.3 2.9E-05 43.9 15.2 206 125-355 30-257 (292)
210 PRK05835 fructose-bisphosphate 94.5 0.58 1.2E-05 46.8 12.3 119 215-354 5-128 (307)
211 PRK12677 xylose isomerase; Pro 94.5 2.2 4.8E-05 43.9 17.0 113 120-235 32-179 (384)
212 PRK09196 fructose-1,6-bisphosp 94.4 0.65 1.4E-05 47.2 12.7 120 215-355 6-137 (347)
213 COG0269 SgbH 3-hexulose-6-phos 94.4 0.55 1.2E-05 44.5 11.3 168 115-321 12-189 (217)
214 TIGR01290 nifB nitrogenase cof 94.4 7.7 0.00017 40.8 21.6 169 115-291 59-260 (442)
215 PRK02083 imidazole glycerol ph 94.4 5 0.00011 38.5 19.0 204 118-357 29-251 (253)
216 PRK07709 fructose-bisphosphate 94.4 0.82 1.8E-05 45.3 13.1 104 215-330 6-115 (285)
217 TIGR02026 BchE magnesium-proto 94.3 1.6 3.4E-05 46.4 15.9 156 116-289 222-390 (497)
218 TIGR01521 FruBisAldo_II_B fruc 94.3 0.65 1.4E-05 47.2 12.3 117 215-352 4-132 (347)
219 PF01261 AP_endonuc_2: Xylose 94.3 0.11 2.3E-06 47.1 6.2 169 126-304 2-196 (213)
220 COG0274 DeoC Deoxyribose-phosp 94.3 1.3 2.9E-05 42.2 13.6 109 233-352 63-179 (228)
221 PRK09358 adenosine deaminase; 94.3 4.4 9.5E-05 40.5 18.3 133 176-321 85-223 (340)
222 PRK13347 coproporphyrinogen II 94.3 2.2 4.8E-05 44.7 16.8 111 152-269 121-240 (453)
223 PF01116 F_bP_aldolase: Fructo 94.3 0.26 5.7E-06 48.8 9.3 121 212-354 2-127 (287)
224 PTZ00170 D-ribulose-5-phosphat 94.2 0.27 5.8E-06 46.9 9.1 96 245-356 16-116 (228)
225 TIGR00538 hemN oxygen-independ 94.2 4 8.6E-05 42.8 18.6 150 132-290 102-275 (455)
226 PRK07259 dihydroorotate dehydr 94.2 0.96 2.1E-05 44.6 13.2 103 208-323 76-188 (301)
227 cd04733 OYE_like_2_FMN Old yel 94.2 1.4 3E-05 44.4 14.5 135 179-322 156-320 (338)
228 PF00834 Ribul_P_3_epim: Ribul 94.2 0.036 7.8E-07 52.0 2.9 167 121-321 14-191 (201)
229 PF03102 NeuB: NeuB family; I 94.1 3.3 7.1E-05 40.0 16.4 124 174-327 78-206 (241)
230 TIGR02668 moaA_archaeal probab 94.1 4.8 0.0001 39.5 18.0 136 115-264 39-180 (302)
231 cd02803 OYE_like_FMN_family Ol 94.1 2.7 5.9E-05 41.6 16.3 138 179-322 148-309 (327)
232 cd01335 Radical_SAM Radical SA 94.0 3.2 6.8E-05 36.4 15.1 136 119-264 31-172 (204)
233 PRK07565 dihydroorotate dehydr 94.0 2.5 5.5E-05 42.4 16.1 79 245-324 111-197 (334)
234 KOG4175 Tryptophan synthase al 94.0 1.3 2.8E-05 41.7 12.6 154 116-297 29-212 (268)
235 PRK13523 NADPH dehydrogenase N 94.0 2 4.4E-05 43.4 15.3 135 179-321 149-302 (337)
236 cd04735 OYE_like_4_FMN Old yel 93.9 2 4.4E-05 43.6 15.3 137 179-320 151-309 (353)
237 cd00377 ICL_PEPM Members of th 93.9 2.9 6.2E-05 40.3 15.6 189 124-326 21-228 (243)
238 TIGR03551 F420_cofH 7,8-dideme 93.9 0.52 1.1E-05 47.5 10.8 77 244-322 69-156 (343)
239 TIGR01579 MiaB-like-C MiaB-lik 93.9 3.6 7.8E-05 42.5 17.3 143 115-266 166-323 (414)
240 cd04732 HisA HisA. Phosphorib 93.8 5.8 0.00013 37.2 17.8 182 118-322 28-217 (234)
241 PRK13399 fructose-1,6-bisphosp 93.8 0.72 1.6E-05 46.9 11.5 102 214-327 5-110 (347)
242 COG2513 PrpB PEP phosphonomuta 93.8 3.1 6.8E-05 41.1 15.5 136 176-321 29-183 (289)
243 PRK06843 inosine 5-monophospha 93.7 0.89 1.9E-05 47.2 12.3 72 250-330 154-225 (404)
244 TIGR01858 tag_bisphos_ald clas 93.7 0.97 2.1E-05 44.7 12.1 118 215-354 4-126 (282)
245 PRK00366 ispG 4-hydroxy-3-meth 93.7 5.6 0.00012 40.5 17.5 239 117-397 40-315 (360)
246 cd02810 DHOD_DHPD_FMN Dihydroo 93.7 2.1 4.5E-05 41.8 14.5 78 246-324 109-196 (289)
247 PRK09249 coproporphyrinogen II 93.7 4.4 9.6E-05 42.4 17.7 109 153-269 121-239 (453)
248 PRK08673 3-deoxy-7-phosphohept 93.7 9 0.0002 38.8 19.6 181 117-326 105-301 (335)
249 PRK04180 pyridoxal biosynthesi 93.7 1.2 2.5E-05 44.2 12.4 126 170-324 22-148 (293)
250 TIGR00587 nfo apurinic endonuc 93.6 6.3 0.00014 38.3 17.6 202 122-353 14-249 (274)
251 cd04728 ThiG Thiazole synthase 93.6 2.5 5.4E-05 41.0 14.2 162 123-321 24-201 (248)
252 PLN02623 pyruvate kinase 93.6 8.7 0.00019 41.7 19.8 242 116-380 276-551 (581)
253 PRK08446 coproporphyrinogen II 93.6 3.4 7.3E-05 41.8 16.1 126 132-267 51-184 (350)
254 TIGR02320 PEP_mutase phosphoen 93.5 1.8 3.8E-05 42.9 13.6 107 206-323 61-188 (285)
255 PLN03033 2-dehydro-3-deoxyphos 93.5 8.6 0.00019 38.1 18.4 177 117-322 28-238 (290)
256 cd02933 OYE_like_FMN Old yello 93.5 3 6.4E-05 42.2 15.4 138 179-322 159-312 (338)
257 cd02810 DHOD_DHPD_FMN Dihydroo 93.5 2.1 4.6E-05 41.7 14.0 82 178-271 117-199 (289)
258 PRK05660 HemN family oxidoredu 93.5 3.2 7E-05 42.4 15.9 108 153-267 77-193 (378)
259 PRK00043 thiE thiamine-phospha 93.4 3 6.6E-05 38.3 14.4 155 121-322 23-186 (212)
260 TIGR03700 mena_SCO4494 putativ 93.4 0.8 1.7E-05 46.4 11.3 77 244-322 78-165 (351)
261 PF13714 PEP_mutase: Phosphoen 93.4 2.7 5.9E-05 40.5 14.3 183 125-325 22-220 (238)
262 TIGR00559 pdxJ pyridoxine 5'-p 93.3 0.29 6.2E-06 47.0 7.3 106 165-287 123-236 (237)
263 PF04131 NanE: Putative N-acet 93.3 0.52 1.1E-05 43.9 8.7 89 253-354 56-144 (192)
264 PRK08610 fructose-bisphosphate 93.2 1.7 3.7E-05 43.1 12.9 104 215-330 6-115 (286)
265 TIGR00612 ispG_gcpE 1-hydroxy- 93.2 9.9 0.00021 38.5 18.1 230 117-390 32-299 (346)
266 TIGR01859 fruc_bis_ald_ fructo 93.0 2 4.3E-05 42.4 13.1 104 215-330 4-112 (282)
267 cd00959 DeoC 2-deoxyribose-5-p 93.0 7.6 0.00016 36.1 16.8 140 178-351 23-169 (203)
268 PRK05628 coproporphyrinogen II 93.0 4.9 0.00011 40.9 16.3 108 153-267 78-194 (375)
269 PRK12457 2-dehydro-3-deoxyphos 93.0 10 0.00022 37.5 18.6 178 117-321 28-234 (281)
270 cd00429 RPE Ribulose-5-phospha 92.9 7.4 0.00016 35.6 18.8 173 115-321 8-191 (211)
271 cd00377 ICL_PEPM Members of th 92.9 1.8 3.9E-05 41.7 12.3 137 177-323 21-179 (243)
272 PRK05799 coproporphyrinogen II 92.8 3.1 6.8E-05 42.2 14.6 95 165-267 85-185 (374)
273 TIGR03569 NeuB_NnaB N-acetylne 92.8 9.3 0.0002 38.7 17.6 176 117-323 14-222 (329)
274 PRK08599 coproporphyrinogen II 92.7 4.4 9.5E-05 41.2 15.6 108 153-267 70-186 (377)
275 TIGR00736 nifR3_rel_arch TIM-b 92.6 9.3 0.0002 36.7 16.7 102 212-325 120-221 (231)
276 PRK14338 (dimethylallyl)adenos 92.6 4 8.6E-05 43.0 15.4 144 115-266 183-340 (459)
277 PRK08195 4-hyroxy-2-oxovalerat 92.6 2 4.4E-05 43.4 12.7 38 66-110 14-51 (337)
278 cd04727 pdxS PdxS is a subunit 92.6 1.9 4.2E-05 42.5 12.0 126 173-328 16-143 (283)
279 PRK05581 ribulose-phosphate 3- 92.5 8.8 0.00019 35.6 18.8 174 115-322 12-196 (220)
280 PRK13813 orotidine 5'-phosphat 92.5 0.76 1.6E-05 42.9 9.0 171 117-323 14-191 (215)
281 TIGR01212 radical SAM protein, 92.5 5.4 0.00012 39.6 15.5 51 212-267 162-212 (302)
282 cd04722 TIM_phosphate_binding 92.4 7.3 0.00016 34.3 18.0 134 176-330 16-149 (200)
283 PTZ00314 inosine-5'-monophosph 92.4 4.7 0.0001 43.0 15.7 160 121-312 242-407 (495)
284 TIGR01211 ELP3 histone acetylt 92.3 16 0.00035 39.3 19.7 110 175-291 206-334 (522)
285 PRK05904 coproporphyrinogen II 92.3 7.6 0.00017 39.4 16.6 106 154-266 76-188 (353)
286 cd04731 HisF The cyclase subun 92.3 10 0.00023 35.9 18.3 202 119-352 27-242 (243)
287 COG1830 FbaB DhnA-type fructos 92.3 3.1 6.6E-05 40.8 12.9 180 118-322 42-235 (265)
288 PRK04165 acetyl-CoA decarbonyl 92.3 10 0.00022 40.0 17.8 122 116-271 102-235 (450)
289 cd02932 OYE_YqiM_FMN Old yello 92.3 6 0.00013 39.7 15.7 134 179-321 161-317 (336)
290 cd04739 DHOD_like Dihydroorota 92.3 3.2 7E-05 41.6 13.7 79 245-324 109-195 (325)
291 cd02930 DCR_FMN 2,4-dienoyl-Co 92.3 5.4 0.00012 40.4 15.4 136 178-321 143-303 (353)
292 COG2100 Predicted Fe-S oxidore 92.2 5.9 0.00013 40.1 14.9 176 103-287 124-322 (414)
293 PF00701 DHDPS: Dihydrodipicol 92.2 5 0.00011 39.2 14.7 42 247-288 82-124 (289)
294 TIGR00089 RNA modification enz 92.2 9.1 0.0002 39.7 17.4 144 115-267 167-325 (429)
295 PF02679 ComA: (2R)-phospho-3- 92.2 0.89 1.9E-05 44.0 9.1 154 177-354 29-196 (244)
296 PRK07094 biotin synthase; Prov 92.1 3.3 7.1E-05 41.1 13.5 79 245-328 70-150 (323)
297 PF03932 CutC: CutC family; I 92.1 9.9 0.00021 35.8 15.8 136 168-324 3-147 (201)
298 COG3623 SgaU Putative L-xylulo 92.1 12 0.00026 36.2 17.7 219 113-366 15-260 (287)
299 PRK14325 (dimethylallyl)adenos 92.1 9.2 0.0002 39.9 17.3 144 115-266 175-334 (444)
300 TIGR00126 deoC deoxyribose-pho 92.0 11 0.00023 35.8 16.1 134 233-377 56-203 (211)
301 PRK06801 hypothetical protein; 92.0 2 4.3E-05 42.6 11.6 120 214-355 5-129 (286)
302 TIGR01430 aden_deam adenosine 91.9 10 0.00022 37.6 16.7 132 177-321 77-213 (324)
303 PRK12738 kbaY tagatose-bisphos 91.9 2.5 5.5E-05 41.9 12.2 116 215-352 6-126 (286)
304 PRK02412 aroD 3-dehydroquinate 91.9 13 0.00028 36.0 24.6 202 117-354 26-250 (253)
305 TIGR03822 AblA_like_2 lysine-2 91.9 15 0.00033 36.8 19.4 182 90-292 82-296 (321)
306 PRK14340 (dimethylallyl)adenos 91.9 4.6 9.9E-05 42.4 14.7 141 115-266 177-333 (445)
307 PRK14334 (dimethylallyl)adenos 91.8 6.5 0.00014 41.1 15.8 146 115-266 166-322 (440)
308 TIGR03821 AblA_like_1 lysine-2 91.8 15 0.00033 36.8 18.6 183 90-292 90-302 (321)
309 PRK10605 N-ethylmaleimide redu 91.8 7.1 0.00015 39.9 15.7 141 179-330 166-322 (362)
310 PRK06294 coproporphyrinogen II 91.8 3.9 8.5E-05 41.7 13.8 107 154-267 78-189 (370)
311 TIGR01520 FruBisAldo_II_A fruc 91.7 17 0.00037 37.2 21.2 198 115-324 34-287 (357)
312 PRK07259 dihydroorotate dehydr 91.7 14 0.00031 36.3 17.8 136 123-271 27-192 (301)
313 PTZ00372 endonuclease 4-like p 91.7 17 0.00037 38.0 18.4 120 177-304 223-351 (413)
314 PRK14332 (dimethylallyl)adenos 91.7 8.5 0.00019 40.4 16.5 143 115-265 182-335 (449)
315 cd00003 PNPsynthase Pyridoxine 91.6 2.2 4.8E-05 41.0 11.0 97 155-267 111-210 (234)
316 cd00954 NAL N-Acetylneuraminic 91.6 4 8.6E-05 40.1 13.3 104 178-303 60-168 (288)
317 TIGR01501 MthylAspMutase methy 91.5 6.9 0.00015 34.4 13.2 113 121-285 18-130 (134)
318 TIGR03217 4OH_2_O_val_ald 4-hy 91.5 3.2 7E-05 41.9 12.7 38 66-110 13-50 (333)
319 PRK08207 coproporphyrinogen II 91.5 4.6 0.0001 42.9 14.4 108 175-289 269-391 (488)
320 PRK12737 gatY tagatose-bisphos 91.5 3 6.6E-05 41.2 12.2 118 215-354 6-128 (284)
321 TIGR00343 pyridoxal 5'-phospha 91.5 9.4 0.0002 37.8 15.4 64 253-327 81-144 (287)
322 TIGR01496 DHPS dihydropteroate 91.4 1.6 3.5E-05 42.5 10.1 77 242-324 16-102 (257)
323 cd01321 ADGF Adenosine deamina 91.4 18 0.00038 36.7 18.4 159 178-355 76-247 (345)
324 PRK08508 biotin synthase; Prov 91.4 0.85 1.8E-05 44.7 8.2 117 206-330 40-163 (279)
325 PRK13111 trpA tryptophan synth 91.4 7.9 0.00017 37.7 14.8 152 178-352 32-197 (258)
326 cd00952 CHBPH_aldolase Trans-o 91.3 1.9 4.1E-05 42.9 10.7 82 243-324 24-110 (309)
327 PRK14335 (dimethylallyl)adenos 91.3 8.9 0.00019 40.3 16.2 144 115-266 180-343 (455)
328 PF04131 NanE: Putative N-acet 91.2 4 8.6E-05 38.1 11.8 150 123-321 3-170 (192)
329 PRK07360 FO synthase subunit 2 91.2 2.1 4.6E-05 43.7 11.2 77 244-322 90-178 (371)
330 PRK13745 anaerobic sulfatase-m 91.1 20 0.00043 37.1 18.3 140 115-267 47-200 (412)
331 PRK05265 pyridoxine 5'-phospha 91.0 0.86 1.9E-05 43.9 7.6 116 155-287 114-237 (239)
332 PTZ00314 inosine-5'-monophosph 91.0 2.6 5.6E-05 44.9 12.0 70 251-326 243-312 (495)
333 TIGR01302 IMP_dehydrog inosine 91.0 6.3 0.00014 41.4 14.7 162 119-312 223-390 (450)
334 TIGR03581 EF_0839 conserved hy 91.0 2.5 5.4E-05 40.2 10.4 89 178-288 141-236 (236)
335 PF04055 Radical_SAM: Radical 91.0 5.7 0.00012 33.8 12.2 132 114-256 26-165 (166)
336 TIGR03128 RuMP_HxlA 3-hexulose 91.0 1.3 2.8E-05 40.9 8.7 99 244-360 8-108 (206)
337 PRK05567 inosine 5'-monophosph 90.9 1.9 4.1E-05 45.7 10.8 69 251-325 230-298 (486)
338 PLN02495 oxidoreductase, actin 90.9 7.9 0.00017 40.0 14.9 84 245-329 124-222 (385)
339 PRK13209 L-xylulose 5-phosphat 90.8 5.6 0.00012 38.4 13.3 167 123-303 25-218 (283)
340 PLN02591 tryptophan synthase 90.8 11 0.00024 36.5 15.2 152 178-352 22-186 (250)
341 PRK05458 guanosine 5'-monophos 90.8 3.7 8E-05 41.5 12.2 75 246-327 95-171 (326)
342 cd04734 OYE_like_3_FMN Old yel 90.7 13 0.00028 37.6 16.3 136 179-321 148-312 (343)
343 cd00947 TBP_aldolase_IIB Tagat 90.7 3 6.4E-05 41.2 11.2 102 216-330 2-107 (276)
344 TIGR02317 prpB methylisocitrat 90.7 4.4 9.6E-05 40.1 12.5 134 178-321 26-178 (285)
345 cd00952 CHBPH_aldolase Trans-o 90.7 7.3 0.00016 38.8 14.2 80 214-304 91-175 (309)
346 PRK03170 dihydrodipicolinate s 90.7 2.2 4.7E-05 41.9 10.4 83 243-325 17-104 (292)
347 cd02072 Glm_B12_BD B12 binding 90.6 9.9 0.00022 33.2 13.3 107 122-281 17-124 (128)
348 cd06556 ICL_KPHMT Members of t 90.6 17 0.00037 35.1 16.8 140 166-323 12-175 (240)
349 cd00408 DHDPS-like Dihydrodipi 90.6 6.4 0.00014 38.1 13.5 57 215-276 81-140 (281)
350 cd00381 IMPDH IMPDH: The catal 90.6 7.7 0.00017 39.0 14.3 130 119-268 93-226 (325)
351 PRK00112 tgt queuine tRNA-ribo 90.4 16 0.00034 37.5 16.6 143 182-343 134-281 (366)
352 PF01702 TGT: Queuine tRNA-rib 90.4 6.6 0.00014 37.5 13.2 82 243-328 63-145 (238)
353 PRK09195 gatY tagatose-bisphos 90.4 3.2 6.9E-05 41.1 11.2 118 215-354 6-128 (284)
354 TIGR00167 cbbA ketose-bisphosp 90.4 4.4 9.6E-05 40.2 12.2 121 214-355 5-132 (288)
355 TIGR01302 IMP_dehydrog inosine 90.4 2.4 5.2E-05 44.5 11.0 72 249-326 224-295 (450)
356 PRK05718 keto-hydroxyglutarate 90.3 4.3 9.3E-05 38.4 11.6 70 245-323 24-93 (212)
357 COG0535 Predicted Fe-S oxidore 90.3 19 0.00041 35.2 17.8 139 114-267 46-192 (347)
358 cd02940 DHPD_FMN Dihydropyrimi 90.3 17 0.00037 35.9 16.4 77 245-322 110-198 (299)
359 cd00951 KDGDH 5-dehydro-4-deox 90.3 4.3 9.4E-05 39.9 12.1 82 242-323 15-100 (289)
360 cd04722 TIM_phosphate_binding 90.2 12 0.00027 32.8 16.9 172 119-323 12-198 (200)
361 PRK08208 coproporphyrinogen II 90.2 12 0.00025 39.1 15.8 87 175-269 141-229 (430)
362 PRK08444 hypothetical protein; 90.1 1.2 2.5E-05 45.5 8.1 103 243-356 78-204 (353)
363 PF00809 Pterin_bind: Pterin b 89.9 16 0.00034 34.3 15.0 152 115-287 15-189 (210)
364 TIGR02313 HpaI-NOT-DapA 2,4-di 89.7 14 0.0003 36.5 15.2 82 214-304 83-169 (294)
365 PRK02048 4-hydroxy-3-methylbut 89.7 9.6 0.00021 41.4 14.7 191 116-318 38-255 (611)
366 COG2185 Sbm Methylmalonyl-CoA 89.6 9.7 0.00021 34.0 12.5 94 123-270 31-124 (143)
367 PRK12857 fructose-1,6-bisphosp 89.6 3.9 8.4E-05 40.5 11.1 120 214-355 5-129 (284)
368 PF01645 Glu_synthase: Conserv 89.6 2 4.4E-05 44.1 9.3 69 259-330 170-238 (368)
369 TIGR00683 nanA N-acetylneurami 89.6 3.2 6.9E-05 40.9 10.6 82 242-323 15-102 (290)
370 PRK14331 (dimethylallyl)adenos 89.5 11 0.00024 39.3 15.0 143 115-266 174-330 (437)
371 PRK13533 7-cyano-7-deazaguanin 89.5 8.4 0.00018 41.1 14.1 137 178-326 108-249 (487)
372 COG2876 AroA 3-deoxy-D-arabino 89.5 16 0.00034 36.0 14.7 207 94-330 26-255 (286)
373 PF03740 PdxJ: Pyridoxal phosp 89.4 1.4 3E-05 42.5 7.5 74 154-230 111-189 (239)
374 TIGR01304 IMP_DH_rel_2 IMP deh 89.4 2.8 6E-05 43.1 10.2 89 213-322 119-214 (369)
375 PRK03620 5-dehydro-4-deoxygluc 89.4 3.3 7.1E-05 41.1 10.6 82 242-323 22-107 (303)
376 PRK07379 coproporphyrinogen II 89.4 6.2 0.00014 40.7 12.9 86 175-267 115-201 (400)
377 PRK07084 fructose-bisphosphate 89.3 2.5 5.4E-05 42.6 9.6 107 212-330 9-123 (321)
378 cd00950 DHDPS Dihydrodipicolin 89.3 8.2 0.00018 37.5 13.2 99 178-298 59-160 (284)
379 TIGR00674 dapA dihydrodipicoli 89.2 7.3 0.00016 38.1 12.7 104 178-303 57-164 (285)
380 PRK14336 (dimethylallyl)adenos 89.1 16 0.00035 38.0 15.8 144 115-266 152-309 (418)
381 PRK14041 oxaloacetate decarbox 89.1 3.9 8.5E-05 43.3 11.3 17 362-378 182-198 (467)
382 TIGR01125 MiaB-like tRNA modif 89.1 25 0.00055 36.5 17.3 143 115-265 163-319 (430)
383 PRK04147 N-acetylneuraminate l 89.0 3.5 7.5E-05 40.6 10.3 83 242-324 18-106 (293)
384 PRK11572 copper homeostasis pr 88.9 11 0.00023 36.7 13.3 136 168-324 4-148 (248)
385 PRK14327 (dimethylallyl)adenos 88.9 21 0.00045 38.3 16.7 145 115-267 240-398 (509)
386 PRK03170 dihydrodipicolinate s 88.9 11 0.00023 37.0 13.7 104 178-303 60-167 (292)
387 cd00950 DHDPS Dihydrodipicolin 88.8 3.6 7.9E-05 40.0 10.3 83 243-325 16-103 (284)
388 PRK11320 prpB 2-methylisocitra 88.8 7.8 0.00017 38.6 12.6 134 178-321 30-183 (292)
389 cd00956 Transaldolase_FSA Tran 88.8 12 0.00026 35.3 13.3 121 116-268 61-185 (211)
390 TIGR02351 thiH thiazole biosyn 88.8 8.4 0.00018 39.3 13.3 77 245-328 103-183 (366)
391 TIGR03849 arch_ComA phosphosul 88.7 3.5 7.7E-05 39.7 9.8 107 178-301 77-194 (237)
392 PF04476 DUF556: Protein of un 88.7 9.2 0.0002 36.9 12.4 145 118-285 66-233 (235)
393 PRK13758 anaerobic sulfatase-m 88.7 18 0.00039 36.5 15.5 161 115-288 38-223 (370)
394 TIGR03249 KdgD 5-dehydro-4-deo 88.7 4.1 8.8E-05 40.2 10.6 81 243-323 21-105 (296)
395 PRK07107 inosine 5-monophospha 88.6 10 0.00023 40.5 14.2 139 113-269 235-382 (502)
396 TIGR01064 pyruv_kin pyruvate k 88.6 36 0.00079 36.1 18.2 245 116-382 169-451 (473)
397 TIGR01431 adm_rel adenosine de 88.5 20 0.00044 38.1 16.2 159 179-355 204-373 (479)
398 cd07944 DRE_TIM_HOA_like 4-hyd 88.5 6.8 0.00015 38.2 11.9 38 66-110 9-46 (266)
399 PF13714 PEP_mutase: Phosphoen 88.5 4.9 0.00011 38.7 10.7 137 176-321 20-172 (238)
400 TIGR00674 dapA dihydrodipicoli 88.5 4.2 9.1E-05 39.8 10.5 83 243-325 14-101 (285)
401 TIGR01037 pyrD_sub1_fam dihydr 88.4 9.7 0.00021 37.4 13.1 91 223-323 87-188 (300)
402 cd02801 DUS_like_FMN Dihydrour 88.4 12 0.00025 35.0 13.1 133 178-323 73-212 (231)
403 PRK11613 folP dihydropteroate 88.4 24 0.00053 34.9 15.7 126 179-330 45-192 (282)
404 PRK09240 thiH thiamine biosynt 88.4 8.5 0.00018 39.3 13.0 79 245-329 104-185 (371)
405 TIGR03249 KdgD 5-dehydro-4-deo 88.3 17 0.00037 35.8 14.8 39 217-260 90-128 (296)
406 cd00408 DHDPS-like Dihydrodipi 88.3 26 0.00055 33.9 22.6 191 115-351 14-215 (281)
407 PRK14330 (dimethylallyl)adenos 88.3 29 0.00062 36.1 17.1 144 115-266 168-325 (434)
408 TIGR01574 miaB-methiolase tRNA 88.2 29 0.00064 36.1 17.1 144 115-266 173-332 (438)
409 PLN02417 dihydrodipicolinate s 88.2 4.4 9.6E-05 39.7 10.4 83 242-324 16-103 (280)
410 COG3473 Maleate cis-trans isom 88.2 23 0.0005 33.8 14.4 145 120-290 55-203 (238)
411 PRK14339 (dimethylallyl)adenos 88.1 36 0.00077 35.4 20.1 143 115-265 155-314 (420)
412 PF01261 AP_endonuc_2: Xylose 88.1 10 0.00023 33.9 12.2 82 178-268 1-91 (213)
413 COG2100 Predicted Fe-S oxidore 88.0 7.2 0.00016 39.5 11.5 127 231-379 117-258 (414)
414 TIGR00683 nanA N-acetylneurami 87.9 13 0.00028 36.7 13.5 80 215-304 85-169 (290)
415 PRK05283 deoxyribose-phosphate 87.9 28 0.00061 34.0 18.4 135 233-377 69-223 (257)
416 PF02679 ComA: (2R)-phospho-3- 87.9 2.3 4.9E-05 41.2 7.9 170 124-319 27-242 (244)
417 PRK14337 (dimethylallyl)adenos 87.9 26 0.00056 36.7 16.5 145 115-267 176-335 (446)
418 TIGR02313 HpaI-NOT-DapA 2,4-di 87.9 4.6 0.0001 39.8 10.4 82 243-324 16-102 (294)
419 cd00945 Aldolase_Class_I Class 87.8 20 0.00043 32.0 16.4 96 247-351 64-167 (201)
420 PRK09490 metH B12-dependent me 87.7 62 0.0013 38.5 20.7 224 122-379 167-456 (1229)
421 cd04747 OYE_like_5_FMN Old yel 87.6 22 0.00047 36.4 15.3 140 179-321 151-325 (361)
422 PRK14326 (dimethylallyl)adenos 87.5 24 0.00052 37.7 16.1 143 115-265 185-341 (502)
423 TIGR00423 radical SAM domain p 87.3 7.4 0.00016 38.6 11.5 77 244-322 35-122 (309)
424 cd02931 ER_like_FMN Enoate red 87.3 33 0.00071 35.2 16.6 136 179-321 157-332 (382)
425 PRK07807 inosine 5-monophospha 87.3 17 0.00036 38.8 14.7 132 119-269 226-360 (479)
426 PRK00311 panB 3-methyl-2-oxobu 87.2 24 0.00052 34.6 14.7 138 125-297 28-202 (264)
427 TIGR01334 modD putative molybd 87.2 21 0.00046 35.2 14.4 124 179-326 140-265 (277)
428 TIGR02321 Pphn_pyruv_hyd phosp 87.2 14 0.00031 36.7 13.3 208 124-354 27-257 (290)
429 PRK06843 inosine 5-monophospha 87.2 20 0.00043 37.3 14.8 132 119-269 152-286 (404)
430 PLN02389 biotin synthase 87.2 13 0.00027 38.4 13.4 23 246-268 117-139 (379)
431 cd03174 DRE_TIM_metallolyase D 87.2 9.7 0.00021 36.2 11.9 12 217-228 23-34 (265)
432 cd06557 KPHMT-like Ketopantoat 87.1 28 0.00061 33.9 15.0 146 118-291 18-193 (254)
433 PRK00748 1-(5-phosphoribosyl)- 87.0 26 0.00057 32.7 16.2 160 119-299 30-197 (233)
434 PRK13210 putative L-xylulose 5 87.0 24 0.00051 33.8 14.6 121 176-303 20-157 (284)
435 PRK02227 hypothetical protein; 87.0 4.7 0.0001 38.9 9.5 147 116-288 64-235 (238)
436 cd00954 NAL N-Acetylneuraminic 87.0 5.6 0.00012 39.0 10.4 81 243-323 16-102 (288)
437 PRK08255 salicylyl-CoA 5-hydro 87.0 19 0.00041 40.4 15.7 134 179-321 558-714 (765)
438 PRK09197 fructose-bisphosphate 86.8 9.5 0.00021 38.9 11.9 120 213-354 7-159 (350)
439 PF05690 ThiG: Thiazole biosyn 86.7 15 0.00032 35.5 12.5 171 123-326 23-208 (247)
440 TIGR03151 enACPred_II putative 86.7 36 0.00078 33.9 16.5 164 122-333 25-201 (307)
441 cd02940 DHPD_FMN Dihydropyrimi 86.7 14 0.0003 36.6 13.0 90 172-273 108-205 (299)
442 PTZ00300 pyruvate kinase; Prov 86.7 47 0.001 35.2 17.7 200 115-329 144-361 (454)
443 PRK15108 biotin synthase; Prov 86.6 6.8 0.00015 39.7 10.9 115 206-330 76-197 (345)
444 cd00381 IMPDH IMPDH: The catal 86.4 11 0.00024 37.9 12.3 71 250-326 95-165 (325)
445 TIGR03699 mena_SCO4550 menaqui 86.4 6.4 0.00014 39.5 10.6 77 244-322 71-158 (340)
446 TIGR00284 dihydropteroate synt 86.4 6.9 0.00015 41.8 11.2 74 247-327 164-237 (499)
447 TIGR00007 phosphoribosylformim 86.4 29 0.00062 32.5 18.6 180 119-321 28-215 (230)
448 PRK08185 hypothetical protein; 86.2 9.1 0.0002 37.9 11.3 102 216-330 2-106 (283)
449 PLN02951 Molybderin biosynthes 86.2 22 0.00048 36.4 14.6 120 214-355 94-229 (373)
450 PF04551 GcpE: GcpE protein; 86.2 43 0.00093 34.3 18.2 185 116-327 28-243 (359)
451 TIGR02082 metH 5-methyltetrahy 86.2 76 0.0016 37.7 20.3 221 122-379 151-440 (1178)
452 PRK07535 methyltetrahydrofolat 86.1 33 0.00072 33.4 15.1 121 179-330 32-168 (261)
453 PF09587 PGA_cap: Bacterial ca 86.1 7 0.00015 37.4 10.4 137 121-265 64-220 (250)
454 PLN02433 uroporphyrinogen deca 86.0 5.2 0.00011 40.3 9.8 72 248-323 179-259 (345)
455 TIGR00432 arcsn_tRNA_tgt tRNA- 86.0 11 0.00024 40.7 12.7 132 182-325 8-144 (540)
456 PRK05198 2-dehydro-3-deoxyphos 86.0 37 0.0008 33.4 18.9 177 117-322 22-227 (264)
457 cd04724 Tryptophan_synthase_al 85.9 33 0.00072 32.8 16.9 154 177-352 19-184 (242)
458 TIGR00222 panB 3-methyl-2-oxob 85.9 37 0.00081 33.3 15.4 111 165-289 14-128 (263)
459 cd04730 NPD_like 2-Nitropropan 85.9 16 0.00035 34.1 12.6 111 176-325 71-186 (236)
460 PRK13361 molybdenum cofactor b 85.9 21 0.00045 35.7 13.9 92 249-355 77-184 (329)
461 cd02801 DUS_like_FMN Dihydrour 85.8 8 0.00017 36.1 10.4 79 246-325 65-159 (231)
462 TIGR00542 hxl6Piso_put hexulos 85.8 35 0.00075 32.9 16.1 75 208-286 89-172 (279)
463 COG0821 gcpE 1-hydroxy-2-methy 85.8 44 0.00094 34.0 20.9 233 117-390 34-301 (361)
464 PRK14328 (dimethylallyl)adenos 85.8 48 0.001 34.6 17.1 143 115-265 175-331 (439)
465 cd06811 PLPDE_III_yhfX_like Ty 85.8 45 0.00098 34.2 16.7 178 122-333 67-265 (382)
466 TIGR01362 KDO8P_synth 3-deoxy- 85.7 38 0.00082 33.2 18.5 69 221-289 170-252 (258)
467 TIGR02319 CPEP_Pphonmut carbox 85.7 13 0.00028 37.0 12.1 134 178-321 29-182 (294)
468 PRK08898 coproporphyrinogen II 85.6 20 0.00044 36.8 14.1 93 165-267 108-207 (394)
469 TIGR01037 pyrD_sub1_fam dihydr 85.6 38 0.00083 33.2 19.0 49 213-271 143-192 (300)
470 COG0854 PdxJ Pyridoxal phospha 85.5 2.4 5.2E-05 40.4 6.5 119 157-288 114-240 (243)
471 PRK09057 coproporphyrinogen II 85.4 40 0.00086 34.5 16.0 94 166-268 91-190 (380)
472 TIGR03572 WbuZ glycosyl amidat 85.3 33 0.00072 32.2 19.7 157 120-297 31-202 (232)
473 TIGR00449 tgt_general tRNA-gua 85.3 25 0.00055 36.0 14.4 134 179-328 127-267 (367)
474 TIGR03820 lys_2_3_AblA lysine- 85.2 53 0.0011 34.4 20.1 182 90-292 102-314 (417)
475 TIGR02321 Pphn_pyruv_hyd phosp 85.1 18 0.00038 36.0 12.8 134 177-322 27-184 (290)
476 PRK07896 nicotinate-nucleotide 85.1 19 0.00041 35.9 12.9 90 153-270 186-276 (289)
477 cd04733 OYE_like_2_FMN Old yel 85.1 26 0.00056 35.2 14.2 121 207-327 76-259 (338)
478 cd00502 DHQase_I Type I 3-dehy 85.1 34 0.00074 32.2 18.9 185 132-351 24-224 (225)
479 PRK13585 1-(5-phosphoribosyl)- 85.0 35 0.00075 32.2 18.9 198 119-350 32-239 (241)
480 PRK05926 hypothetical protein; 84.9 14 0.00031 37.8 12.5 77 243-324 97-186 (370)
481 TIGR00433 bioB biotin syntheta 84.9 4 8.7E-05 39.7 8.2 21 310-330 164-184 (296)
482 PF01729 QRPTase_C: Quinolinat 84.8 12 0.00026 34.1 10.7 89 152-268 65-155 (169)
483 PRK14329 (dimethylallyl)adenos 84.8 39 0.00085 35.7 16.0 144 115-266 196-358 (467)
484 TIGR00262 trpA tryptophan synt 84.8 40 0.00087 32.7 18.0 151 178-352 30-195 (256)
485 TIGR02631 xylA_Arthro xylose i 84.7 52 0.0011 33.9 19.9 219 117-356 30-279 (382)
486 TIGR02666 moaA molybdenum cofa 84.6 31 0.00066 34.4 14.5 122 213-356 46-184 (334)
487 PRK09058 coproporphyrinogen II 84.5 23 0.00049 37.2 14.0 107 154-267 134-249 (449)
488 PRK14024 phosphoribosyl isomer 84.5 39 0.00084 32.3 17.4 196 120-349 33-238 (241)
489 PRK06354 pyruvate kinase; Prov 84.5 68 0.0015 35.1 17.9 250 115-386 175-458 (590)
490 PRK00164 moaA molybdenum cofac 84.4 32 0.0007 34.1 14.5 120 215-356 54-189 (331)
491 TIGR01520 FruBisAldo_II_A fruc 84.4 21 0.00046 36.5 13.1 118 213-352 13-164 (357)
492 PRK05927 hypothetical protein; 84.3 2.9 6.4E-05 42.5 7.1 78 243-322 74-162 (350)
493 PLN02925 4-hydroxy-3-methylbut 84.3 53 0.0011 36.6 16.7 176 115-301 106-307 (733)
494 COG1902 NemA NADH:flavin oxido 84.1 38 0.00083 34.7 15.0 142 179-330 156-319 (363)
495 PF04273 DUF442: Putative phos 84.1 5.7 0.00012 33.7 7.7 78 219-303 20-97 (110)
496 PRK00230 orotidine 5'-phosphat 84.1 39 0.00086 32.1 14.7 163 123-321 16-204 (230)
497 PRK00115 hemE uroporphyrinogen 84.0 5.9 0.00013 39.9 9.1 72 248-323 186-266 (346)
498 cd00956 Transaldolase_FSA Tran 83.9 39 0.00084 31.8 14.5 150 174-359 8-160 (211)
499 cd00405 PRAI Phosphoribosylant 83.8 23 0.0005 32.7 12.4 156 173-369 7-171 (203)
500 PLN02424 ketopantoate hydroxym 83.8 41 0.00089 34.1 14.7 149 116-291 39-217 (332)
No 1
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=1.1e-76 Score=590.93 Aligned_cols=333 Identities=80% Similarity=1.201 Sum_probs=316.4
Q ss_pred CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Q 015894 66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK 145 (398)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~ 145 (398)
.|+.+.++|.+..+...++.+++++..+||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk 94 (347)
T PLN02746 15 SWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPK 94 (347)
T ss_pred ccchhhhccccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcc
Confidence 78899999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894 146 WVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL 225 (398)
Q Consensus 146 ~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~ 225 (398)
++|||.|.+++++.++..++.++.++++|.+|+++|+++|++.|++++++||.|.+.|+|+|++++++.+.+++++||++
T Consensus 95 ~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~ 174 (347)
T PLN02746 95 WVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKH 174 (347)
T ss_pred cccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988778888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch
Q 015894 226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ 305 (398)
Q Consensus 226 G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl 305 (398)
|+.|+++++++||||+.++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+||
T Consensus 175 Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 254 (347)
T PLN02746 175 SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQ 254 (347)
T ss_pred CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894 306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI 385 (398)
Q Consensus 306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi 385 (398)
|+||+++|+++||++||+|++|||||||||||+||++||+++++|+.+|++++||+++|.++++++++.+|+++|++...
T Consensus 255 A~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~ 334 (347)
T PLN02746 255 ALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAV 334 (347)
T ss_pred HHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ccccccccccCCC
Q 015894 386 ALSKTSTANASKL 398 (398)
Q Consensus 386 vG~~~f~~~~s~~ 398 (398)
......+.-+|||
T Consensus 335 ~~~~~~~~~~~~~ 347 (347)
T PLN02746 335 ALSARITAAASKI 347 (347)
T ss_pred HHHhhhccccccC
Confidence 4332222245553
No 2
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=4.5e-72 Score=547.51 Aligned_cols=287 Identities=63% Similarity=1.025 Sum_probs=280.4
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP 173 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~ 173 (398)
||++|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|++|+|+|++.|.+++++.+.+.+++++.++++
T Consensus 1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~ 80 (287)
T PRK05692 1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP 80 (287)
T ss_pred CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence 47789999999999999999999999999999999999999999999999999999999999888888778899999999
Q ss_pred CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
|.+|+++|+++|++.|++++++||.|.+.|+|++++++++.+.+++++||++|+.|+++++++|+||++++++++++.++
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV 160 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894 254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333 (398)
Q Consensus 254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~ 333 (398)
++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus 161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpf 240 (287)
T PRK05692 161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY 240 (287)
T ss_pred HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCC
Q 015894 334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSG 380 (398)
Q Consensus 334 a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~ 380 (398)
||||+||++||+++.+|+.+|+++++|+++|.++++++++.+|+++|
T Consensus 241 a~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 241 APGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred CCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999987
No 3
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=9.4e-68 Score=514.14 Aligned_cols=273 Identities=59% Similarity=0.984 Sum_probs=265.9
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHH
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFE 179 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie 179 (398)
|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+...+++++.+|+++.+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~ 80 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAE 80 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999988887777666899999999999999
Q ss_pred HHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894 180 AAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 180 ~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~ 259 (398)
+|+++|++.|++++++||.|++.|+|+++++.++.+.+.+++||++|+.|+++++++|+||++++++++++.++++++.+
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 160 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD 160 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894 260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASG 339 (398)
Q Consensus 260 ~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graG 339 (398)
+|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||+||||++|+|
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG 240 (274)
T cd07938 161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240 (274)
T ss_pred cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCccChHHHHHHHHHHH
Q 015894 340 NVATEDVVYMLNGLGVRTNVDIRKLMIAGDFIC 372 (398)
Q Consensus 340 Na~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~ 372 (398)
|++||+++.+|+.+|++++||+++|.+++++++
T Consensus 241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~ 273 (274)
T cd07938 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWIS 273 (274)
T ss_pred CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999886
No 4
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-67 Score=483.93 Aligned_cols=304 Identities=70% Similarity=1.073 Sum_probs=295.8
Q ss_pred chhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh
Q 015894 83 TKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN 162 (398)
Q Consensus 83 ~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~ 162 (398)
.+.++++.....|++++|+++..|||.|.....+|++.|++++++|.+.|+..||.++|++|+|+|||+|..|++..+++
T Consensus 4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~ 83 (316)
T KOG2368|consen 4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK 83 (316)
T ss_pred hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence 35667777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894 163 VEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE 242 (398)
Q Consensus 163 ~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~ 242 (398)
.+++++.+|+||+++++.|+++|+.+|.+|-++||.|...|+||+.+|++.++.++.+.|+++++.|++|++++.|||.+
T Consensus 84 ~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye 163 (316)
T KOG2368|consen 84 FPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE 163 (316)
T ss_pred CCCccccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
+...|+.+.++++.++++||.+|.|.||.|+++|..+.+++..+.+..|...|.+|||||||.|+||.|.+++.|++.+|
T Consensus 164 G~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvD 243 (316)
T KOG2368|consen 164 GAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVD 243 (316)
T ss_pred CCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehh
Confidence 99999999999999999999999999999999999999999999999997789999999999999999999999999999
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894 323 SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386 (398)
Q Consensus 323 ~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~piv 386 (398)
.|+.|||+||||+|.+||++||+++++|+.+|++|++|+.+|.++++++.+.+|++-.++.+.+
T Consensus 244 SsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A 307 (316)
T KOG2368|consen 244 SSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQA 307 (316)
T ss_pred hhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876544
No 5
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=6.5e-65 Score=514.60 Aligned_cols=284 Identities=24% Similarity=0.335 Sum_probs=263.7
Q ss_pred CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC
Q 015894 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP 173 (398)
Q Consensus 95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~ 173 (398)
|++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+ +..+.++.+. ...+.++.+|+|
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r 75 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSE------DEKEAIKAIAKLGLNASILALNR 75 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcCh------HHHHHHHHHHhcCCCeEEEEEcc
Confidence 467999999999999999999999999999999999999999999865421 2225555554 344677888887
Q ss_pred C-HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 174 N-LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 174 n-~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
+ .+|+++++++|++.|++++++||.|.+.++|+|++++++.+.+++++||+.|+.|+ |++++.+|++++++.+
T Consensus 76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~------~~~ed~~r~~~~~l~~ 149 (378)
T PRK11858 76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSAEDASRTDLDFLIE 149 (378)
T ss_pred cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeccCCCCCHHHHHH
Confidence 5 78999999999999999999999999999999999999999999999999999887 3467889999999999
Q ss_pred HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP 332 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp 332 (398)
+++.+.++|+++|+|+||+|.++|.+++++++.+++++ +++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 150 ~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe-- 226 (378)
T PRK11858 150 FAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE-- 226 (378)
T ss_pred HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc--
Confidence 99999999999999999999999999999999999988 568999999999999999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHH-hCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 333 YAKGASGNVATEDVVYMLN-GLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 333 ~a~graGNa~lE~vv~~L~-~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|+||++||+++.+|+ .+|+++++|+++|.++++++++.+|+++|+++||||+++|+ |+|||
T Consensus 227 ----raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~-h~sGi 288 (378)
T PRK11858 227 ----RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFA-HESGI 288 (378)
T ss_pred ----cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhh-hhccc
Confidence 999999999999999 48999999999999999999999999999999999999999 99997
No 6
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=2.2e-64 Score=508.64 Aligned_cols=281 Identities=24% Similarity=0.290 Sum_probs=263.1
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CH
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NL 175 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~ 175 (398)
|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+ +.++.++.+. ..++.++.+|+| +.
T Consensus 2 v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r~~~ 75 (365)
T TIGR02660 2 VIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGE------EERAVIRAIVALGLPARLMAWCRARD 75 (365)
T ss_pred cEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHHHHcCCCcEEEEEcCCCH
Confidence 789999999999999999999999999999999999999999875421 1235555555 457789999996 68
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
++++.++++|++.|++++++||.|++.++|+|++++++.+.+++++||++|+.|+ |++++.+|++++++.++++
T Consensus 76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~~ 149 (365)
T TIGR02660 76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELAE 149 (365)
T ss_pred HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999876 5578899999999999999
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~ 335 (398)
++.++|+++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 150 ~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe----- 223 (365)
T TIGR02660 150 VAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE----- 223 (365)
T ss_pred HHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc-----
Confidence 999999999999999999999999999999999886 68999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHH-HhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 336 GASGNVATEDVVYML-NGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 336 graGNa~lE~vv~~L-~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|+||++||+++.+| ..+|+++++|+.+|.++++++++.+|+++|+++|++|+++|+ |+|||
T Consensus 224 -raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~-h~sGi 285 (365)
T TIGR02660 224 -RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFT-HESGI 285 (365)
T ss_pred -ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hccch
Confidence 99999999999999 568999999999999999999999999999999999999999 99996
No 7
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=7e-64 Score=524.40 Aligned_cols=287 Identities=23% Similarity=0.300 Sum_probs=267.7
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP 173 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~ 173 (398)
||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|.+.+ .|.+.+.+..+..+++++++|+|
T Consensus 1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r 75 (513)
T PRK00915 1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR 75 (513)
T ss_pred CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence 5778999999999999999999999999999999999999999999976431 35555544445667899999997
Q ss_pred -CHhhHHHHH----HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894 174 -NLKGFEAAV----AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS 248 (398)
Q Consensus 174 -n~~~ie~a~----~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~ 248 (398)
+..|++++. ++|++.|++|+++||.|++.++|+|++++++.+.+++++||++|+.|. |+++|.+|++++
T Consensus 76 ~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~ 149 (513)
T PRK00915 76 AVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLD 149 (513)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHH
Confidence 478899888 688999999999999999999999999999999999999999999986 678899999999
Q ss_pred HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
|+.++++.+.++|+++|+||||+|.++|.+++++++.+++++|. ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus 150 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv 229 (513)
T PRK00915 150 FLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTI 229 (513)
T ss_pred HHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999999999999999999999999999999999999885 799999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHhC----CCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 326 SGLGGCPYAKGASGNVATEDVVYMLNGL----GVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 326 ~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
+|||| |+||++||+++++|+.. |+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus 230 ~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~-h~sGi 299 (513)
T PRK00915 230 NGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFA-HESGI 299 (513)
T ss_pred ecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHH-hccch
Confidence 99999 99999999999999753 999999999999999999999999999999999999999 99996
No 8
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=8.7e-64 Score=503.95 Aligned_cols=281 Identities=23% Similarity=0.298 Sum_probs=262.4
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CH
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NL 175 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~ 175 (398)
|.|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|++++ +..+.++.+. ..+++++.+|+| +.
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~v~~~~r~~~ 74 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE------GEFEAIKKISQEGLNAEICSLARALK 74 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh------HHHHHHHHHHhcCCCcEEEEEcccCH
Confidence 579999999999999999999999999999999999999999988653 2233444443 445788999997 68
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+|+++++++|++.|++++++||.|.+.+++++++++++.+.+++++||++|+.|+++++ +.++++++++.++++
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~ 148 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFK 148 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999874443 678999999999999
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~ 335 (398)
++.++|+++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe----- 222 (363)
T TIGR02090 149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE----- 222 (363)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-----
Confidence 999999999999999999999999999999999988 78999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|+||++||+++++|+. +|+++++|+++|.++++++++.+|+++|+++|++|+++|+ |+|||
T Consensus 223 -raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~-h~sGi 284 (363)
T TIGR02090 223 -RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFA-HESGI 284 (363)
T ss_pred -ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHH-Hhcch
Confidence 9999999999999998 8999999999999999999999999999999999999999 99996
No 9
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=5.1e-63 Score=513.13 Aligned_cols=286 Identities=21% Similarity=0.296 Sum_probs=260.3
Q ss_pred CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc---------C
Q 015894 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE---------G 165 (398)
Q Consensus 95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~---------~ 165 (398)
+++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|+|... | .|.+.+.+..+..+ .
T Consensus 82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s---~--~e~e~i~~i~~~~~~~~~~~~~l~ 156 (503)
T PLN03228 82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSS---E--EEFEAVKTIAKTVGNEVDEETGYV 156 (503)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhcccccccccccc
Confidence 56899999999999999999999999999999999999999999997653 2 23333333323222 1
Q ss_pred CcEEEEeCC-HhhHHHHHHc----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC
Q 015894 166 ARFPVLTPN-LKGFEAAVAA----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGC 239 (398)
Q Consensus 166 ~~l~~l~~n-~~~ie~a~~~----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~ 239 (398)
..+.+|+|. .+|+++++++ |++.|++++++||.|++.++|+|++++++.+.++|++||++|+. |. |++
T Consensus 157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~------f~~ 230 (503)
T PLN03228 157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQ------FGC 230 (503)
T ss_pred eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------ecc
Confidence 466788885 5689999988 77899999999999999999999999999999999999999986 43 789
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHh
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
||++|++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++| +++|++|+|||+|||+||+++|+++
T Consensus 231 EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~a 310 (503)
T PLN03228 231 EDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICA 310 (503)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999886 4779999999999999999999999
Q ss_pred CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh------CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG------LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT 390 (398)
Q Consensus 317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~------~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~ 390 (398)
||++||+|++|||| |+||++||+++.+|+. +|+++++|+++|.++++++++.+|+++|+++|+||+++
T Consensus 311 Ga~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~na 384 (503)
T PLN03228 311 GARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANC 384 (503)
T ss_pred CCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHH
Confidence 99999999999999 9999999999999987 48899999999999999999999999999999999999
Q ss_pred cccccCCC
Q 015894 391 STANASKL 398 (398)
Q Consensus 391 f~~~~s~~ 398 (398)
|+ |||||
T Consensus 385 F~-heSGI 391 (503)
T PLN03228 385 FV-HESGI 391 (503)
T ss_pred HH-hccch
Confidence 99 99996
No 10
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=6.8e-63 Score=514.41 Aligned_cols=284 Identities=24% Similarity=0.333 Sum_probs=265.8
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CH
Q 015894 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NL 175 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~ 175 (398)
+|+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|||++++ .|.+.+.+..+..++.++++|+| +.
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~ 75 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE 75 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence 4789999999999999999999999999999999999999999998753 46666644445667889999998 57
Q ss_pred hhHHHHHHc----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 176 KGFEAAVAA----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 176 ~~ie~a~~~----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
+|+++++++ +.+.|+++.++||.|.+.++++|++++++.+.+++++||++|..|. |++||++|++++|+.
T Consensus 76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~ 149 (494)
T TIGR00973 76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLA 149 (494)
T ss_pred HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHH
Confidence 899999887 6788999999999999999999999999999999999999999876 678999999999999
Q ss_pred HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894 252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328 (398)
Q Consensus 252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl 328 (398)
++++.+.++|+++|+||||+|.++|.+++++++.+++++| .++|++|+|||+|||+||+++|+++||++||+|++||
T Consensus 150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl 229 (494)
T TIGR00973 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI 229 (494)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence 9999999999999999999999999999999999999987 3679999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 329 GGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 329 Gecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|| |+||++||+|+++|+. +|+++++|++.|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus 230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~-h~sGi 296 (494)
T TIGR00973 230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFA-HESGI 296 (494)
T ss_pred cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hccch
Confidence 99 9999999999999974 4899999999999999999999999999999999999999 99996
No 11
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=1.1e-62 Score=511.97 Aligned_cols=283 Identities=21% Similarity=0.293 Sum_probs=262.9
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC-H
Q 015894 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN-L 175 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-~ 175 (398)
+|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|++++ .|.+.+....+...+.++.+|++. .
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e~v~~i~~~~~~~~i~a~~r~~~ 76 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GEREAIKAVTDEGLNAEICSFARAVK 76 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHhcCCCcEEEeecccCH
Confidence 4899999999999999999999999999999999999999999998653 344443333334457889999985 6
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+|++++.++|++.|+++.++||.|.+.++++|++++++.+.+++++||++|+.|+++ .++.+|++++|+.++++
T Consensus 77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~ 150 (488)
T PRK09389 77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYK 150 (488)
T ss_pred HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999998843 34778999999999999
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~ 335 (398)
.+.++|+++|+||||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 151 ~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE----- 224 (488)
T PRK09389 151 AGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE----- 224 (488)
T ss_pred HHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-----
Confidence 999999999999999999999999999999998876 68999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|+||++||+++++|+. +|+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus 225 -RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~-h~sGi 286 (488)
T PRK09389 225 -RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFA-HESGI 286 (488)
T ss_pred -cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hcchh
Confidence 9999999999999997 5999999999999999999999999999999999999999 99996
No 12
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=1.9e-62 Score=519.35 Aligned_cols=285 Identities=22% Similarity=0.321 Sum_probs=261.0
Q ss_pred CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccC--------
Q 015894 95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEG-------- 165 (398)
Q Consensus 95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~-------- 165 (398)
|++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||. +| .|.+.+....+.+++
T Consensus 84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp------~D~e~vr~i~~~~~~~v~~~~~v 157 (632)
T PLN02321 84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP------DDLEAVKTIAKEVGNEVDEDGYV 157 (632)
T ss_pred CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc------cHHHHHHHHHHhcccCCCccccc
Confidence 778999999999999999999999999999999999999999999964 44 366654444344333
Q ss_pred CcEEEEeC-CHhhHHHHHHc--CC--CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC
Q 015894 166 ARFPVLTP-NLKGFEAAVAA--GA--KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGC 239 (398)
Q Consensus 166 ~~l~~l~~-n~~~ie~a~~~--Gv--~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~ 239 (398)
..+++|+| +.+|+++++++ ++ ..|++|+++||.|++.++|+|++++++.+.+++++||++|.. |. |++
T Consensus 158 ~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~ 231 (632)
T PLN02321 158 PVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSP 231 (632)
T ss_pred eeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------Eec
Confidence 45667887 68999999998 44 379999999999999999999999999999999999999984 44 778
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHh
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
||++|++++|+.++++++.++|+++|+||||+|+++|.+++++|+.+++++|. ++|++|+|||+|||+||+++|+++
T Consensus 232 EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A 311 (632)
T PLN02321 232 EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA 311 (632)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999874 569999999999999999999999
Q ss_pred CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh------CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG------LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT 390 (398)
Q Consensus 317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~------~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~ 390 (398)
||++||+|++|||| |+||++||+|+++|+. +|+.+++|+++|.++++++++++|+++|+|+|+||+++
T Consensus 312 GA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~na 385 (632)
T PLN02321 312 GARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANA 385 (632)
T ss_pred CCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccc
Confidence 99999999999999 9999999999999975 47899999999999999999999999999999999999
Q ss_pred cccccCCC
Q 015894 391 STANASKL 398 (398)
Q Consensus 391 f~~~~s~~ 398 (398)
|+ |+|||
T Consensus 386 Fa-heSGI 392 (632)
T PLN02321 386 FA-HESGI 392 (632)
T ss_pred ee-hhcCc
Confidence 99 99997
No 13
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=1.9e-62 Score=478.12 Aligned_cols=274 Identities=24% Similarity=0.302 Sum_probs=255.3
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHH-HhcCCCEEEEecC-CCC---CcccCCCCHHHHHHHHHhccCCcEEEEeCCH
Q 015894 101 VEVGPRDGLQNEKNIVPAVVKVELIKLL-VSSGLAVVEATSF-VSP---KWVPQLADAKDVMAAIQNVEGARFPVLTPNL 175 (398)
Q Consensus 101 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L-~~aGv~~IEvG~~-~~~---~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~ 175 (398)
+|+|||||+|.++..|++++|++|++.| +++||+.||+|+| ++| +++|++.|..++... .++.++.+|++|.
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~---~~~~~~~a~~~~~ 77 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGL---LDRIEVLGFVDGD 77 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhcc---ccCcEEEEecCcH
Confidence 5999999999999999999999999997 7889999999999 676 666666554332222 2367888899999
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+++++|+++|++.|++++++||.|.+.|+|+|++++++.+.+++++||++|++|+++++. |+||. |++++++.++++
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~ 154 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 88875 789999999999
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~ 335 (398)
++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe----- 229 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE----- 229 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-----
Confidence 999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894 336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386 (398)
Q Consensus 336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~piv 386 (398)
|+||++||+++.+|+. +|+++++|+++|.++++++++.+|+++|+|+|||
T Consensus 230 -~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 230 -RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred -cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 9999999999999964 8999999999999999999999999999999996
No 14
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-62 Score=498.10 Aligned_cols=284 Identities=29% Similarity=0.346 Sum_probs=258.9
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeC
Q 015894 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTP 173 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~ 173 (398)
+|+|.|+|||||+|.++..|+.++|++|++.|+++|+++||+|+|+++++.+ +.+....... ..+++.++.+
T Consensus 2 ~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~-----~~~~~i~~~~~~~~~~~~~~~~~ 76 (409)
T COG0119 2 KVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDF-----EFVRAIAEKAGLFICALIAALAR 76 (409)
T ss_pred CcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhH-----HHHHHHHHhcCcccchhhhhhHH
Confidence 6899999999999999999999999999999999999999999999876543 3222222122 2455667777
Q ss_pred CH-hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 174 NL-KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 174 n~-~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
+. ++++.++++|++.|++|.++||.|++.++++|+++.++.+.+++++||++|+++++ ++++.+|++++++.+
T Consensus 77 ~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed~~rt~~~~l~~ 150 (409)
T COG0119 77 AIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAEDATRTDPEFLAE 150 (409)
T ss_pred hHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------EeeccccCCHHHHHH
Confidence 65 49999999999999999999999999999999999999999999999999988874 345677999999999
Q ss_pred HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCC
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGC 331 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGec 331 (398)
+++.+.++|+++|+|+||+|.++|.+++++++.+++++| ..+|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 151 ~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE- 229 (409)
T COG0119 151 VVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE- 229 (409)
T ss_pred HHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee-
Confidence 999999999999999999999999999999999999998 479999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHh---CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 332 PYAKGASGNVATEDVVYMLNG---LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 332 p~a~graGNa~lE~vv~~L~~---~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|+||+++|+++++|.. +|+++++|+.+|.++++++++.+|+++|+|+|+||+++|+ |+|||
T Consensus 230 -----RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFa-h~sGI 293 (409)
T COG0119 230 -----RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFA-HESGI 293 (409)
T ss_pred -----ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHH-hhcch
Confidence 9999999999966653 6789999999999999999999999999999999999999 99996
No 15
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=3.8e-61 Score=504.21 Aligned_cols=286 Identities=19% Similarity=0.222 Sum_probs=259.3
Q ss_pred CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEE
Q 015894 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPV 170 (398)
Q Consensus 93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~ 170 (398)
+||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|.... .|.+ ..+.+.. +.++++++
T Consensus 1 ~~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~-----~d~~-~~~~i~~~~l~~~~i~~ 74 (524)
T PRK12344 1 MMMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP-----KDTE-FFKRAKELKLKHAKLAA 74 (524)
T ss_pred CCCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh-----hHHH-HHHHHHHhCCCCcEEEE
Confidence 36788999999999999999999999999999999999999999999975421 2333 3344432 35788888
Q ss_pred EeCC---------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-
Q 015894 171 LTPN---------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP- 240 (398)
Q Consensus 171 l~~n---------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~- 240 (398)
|++. ..+++.++++|++.|+++.++||.|.+.++|+|+++.++.+.+++++||++|+.|+ |+++
T Consensus 75 ~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~ 148 (524)
T PRK12344 75 FGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEH 148 (524)
T ss_pred EeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------Ecccc
Confidence 8753 34678899999999999999999999999999999999999999999999999987 4455
Q ss_pred --CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 241 --VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 241 --~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
+++|++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++ +++|++|+|||+|||+||+++|+++||
T Consensus 149 ~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa 227 (524)
T PRK12344 149 FFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGA 227 (524)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCC
Confidence 67799999999999999999999999999999999999999999999988 578999999999999999999999999
Q ss_pred CEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CC--CCCccChHHHHHHHHHHHHHhCCCCCCCccccccccccccc
Q 015894 319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LG--VRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANA 395 (398)
Q Consensus 319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~G--i~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~ 395 (398)
++||+|++|||| |+||++||+++++|+. +| ++|++|+++|.++++++++++|+++|+++|+||+++|+ |+
T Consensus 228 ~~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~-h~ 300 (524)
T PRK12344 228 RQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFA-HK 300 (524)
T ss_pred CEEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhh-hh
Confidence 999999999999 9999999999999975 67 44899999999999999999999999999999999999 99
Q ss_pred CCC
Q 015894 396 SKL 398 (398)
Q Consensus 396 s~~ 398 (398)
|||
T Consensus 301 SGi 303 (524)
T PRK12344 301 GGI 303 (524)
T ss_pred ccc
Confidence 997
No 16
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=4.6e-61 Score=503.17 Aligned_cols=287 Identities=17% Similarity=0.170 Sum_probs=259.9
Q ss_pred ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeCC-
Q 015894 97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTPN- 174 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~n- 174 (398)
+|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||.+.. .|.+.+.+..+. +.+.++++|+|.
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~~i~~~~r~~ 75 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP-----KDVQFFWQLKEMNFKNAKIVAFCSTR 75 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HHHHHHHHHHHhCCCCcEEEEEeeec
Confidence 4899999999999999999999999999999999999999999876421 244444444432 346889999853
Q ss_pred --------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC
Q 015894 175 --------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP 246 (398)
Q Consensus 175 --------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~ 246 (398)
.+++++++++|.+.|++|.++||.|.+.+++++++++++.+.+++++||++|+.|....+..| |++|++
T Consensus 76 r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~---D~~r~~ 152 (526)
T TIGR00977 76 RPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF---DGYKAN 152 (526)
T ss_pred CCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee---ecccCC
Confidence 235789999999999999999999999999999999999999999999999999874444322 567899
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
++|+.++++.+.++|+++|+||||+|+++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|++
T Consensus 153 ~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Tin 232 (526)
T TIGR00977 153 PEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTIN 232 (526)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999999999999999999999999999876799999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHHh-CCCC--CccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 327 GLGGCPYAKGASGNVATEDVVYMLNG-LGVR--TNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 327 GlGecp~a~graGNa~lE~vv~~L~~-~Gi~--t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|||| |+||++||+++..|.. +|++ +++|+++|.++++++++++|+++|+|+|+||+++|+ |+|||
T Consensus 233 GiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~-h~sGi 300 (526)
T TIGR00977 233 GYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFA-HKGGV 300 (526)
T ss_pred cccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceee-eeccc
Confidence 9999 9999999999999974 7877 799999999999999999999999999999999999 99997
No 17
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=9.7e-61 Score=504.29 Aligned_cols=293 Identities=18% Similarity=0.146 Sum_probs=267.5
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--c-cCCcEEE
Q 015894 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--V-EGARFPV 170 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~-~~~~l~~ 170 (398)
+.+.+.|+|||||||+|.++..|++++|++|++.|+++||+.||+|||.+. + .|.+++.+.++. . +++++++
T Consensus 23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s----~-~D~e~v~~i~~~~l~~~~~~i~a 97 (564)
T TIGR00970 23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS----Q-TDFDFVREIIEQGAIPDDVTIQV 97 (564)
T ss_pred cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----H-HHHHHHHHHHHhcCCCCCcEEEE
Confidence 455799999999999999999999999999999999999999999976543 2 678878777765 2 3689999
Q ss_pred EeCCHh-hHHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE----EeeeecCCC
Q 015894 171 LTPNLK-GFEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY----LSCVVGCPV 241 (398)
Q Consensus 171 l~~n~~-~ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~----l~~~fg~~~ 241 (398)
|+++.+ ++++++++ |++ .|++|.++||.|++.++|+|++++++.+.+++++||++|..+..+ +.+.|+.+|
T Consensus 98 l~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed 177 (564)
T TIGR00970 98 LTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPES 177 (564)
T ss_pred EcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEeccc
Confidence 999876 49999887 554 899999999999999999999999999999999999998754433 234477788
Q ss_pred CCCCCHHHHHHHHHHHHhCCC------CEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHH
Q 015894 242 EGMVPPSKVAYVSKQLYDMGC------SEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANala 312 (398)
.+|++++++.++++.+.++|+ ++|+|+||+|.++|.+++++++.+++++|. ++|++|+|||+|||+||+++
T Consensus 178 ~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANsla 257 (564)
T TIGR00970 178 FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAEL 257 (564)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHH
Confidence 899999999999999999987 499999999999999999999999998863 56999999999999999999
Q ss_pred HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccc
Q 015894 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTST 392 (398)
Q Consensus 313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~ 392 (398)
|+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|++.|.++++++++++|+++|+|+|+||+++|+
T Consensus 258 Av~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~ 331 (564)
T TIGR00970 258 GFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYT 331 (564)
T ss_pred HHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhh
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC
Q 015894 393 ANASKL 398 (398)
Q Consensus 393 ~~~s~~ 398 (398)
|+|||
T Consensus 332 -h~SGi 336 (564)
T TIGR00970 332 -AFSGS 336 (564)
T ss_pred -hccch
Confidence 99996
No 18
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=1.8e-60 Score=501.22 Aligned_cols=291 Identities=18% Similarity=0.129 Sum_probs=261.1
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH-HHHHHH-Hh-c--cCCcE
Q 015894 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK-DVMAAI-QN-V--EGARF 168 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~-~v~~~i-~~-~--~~~~l 168 (398)
+.+++.|.|+|||||+|+++..|++++|++|++.|+++||+.||+|||.. .+.+ +.++.+ +. + ++..+
T Consensus 27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~-------s~~e~e~v~~i~~~~~~~~~~~i 99 (552)
T PRK03739 27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSA-------SQTDFDFVRELIEEGLIPDDVTI 99 (552)
T ss_pred cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc-------ChHHHHHHHHHHHhcCCCCCCEE
Confidence 44579999999999999999999999999999999999999999998543 3333 455555 43 2 47899
Q ss_pred EEEeCCHh-hHHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE-EEEeeeecCCCC
Q 015894 169 PVLTPNLK-GFEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR-GYLSCVVGCPVE 242 (398)
Q Consensus 169 ~~l~~n~~-~ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~-~~l~~~fg~~~~ 242 (398)
.+|+|+.+ |+++++++ |++ .|++|+++||.|++.++++|++++++.+.+++++||++|.... ..+.+.|+.+|.
T Consensus 100 ~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDa 179 (552)
T PRK03739 100 QVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESF 179 (552)
T ss_pred EEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccC
Confidence 99999875 59999886 443 7999999999999999999999999999999999999985321 113345788999
Q ss_pred CCCCHHHHHHHHHHHHh---CCCC---EEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHH
Q 015894 243 GMVPPSKVAYVSKQLYD---MGCS---EISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~---~Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaA 313 (398)
+|++++|+.++++.+.+ +|++ +|+|+||+|+++|.+++++++.+++.+| +++|++|+|||+|||+||+++|
T Consensus 180 sR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaA 259 (552)
T PRK03739 180 TGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELA 259 (552)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHH
Confidence 99999999999999876 4655 5999999999999999999999999987 6789999999999999999999
Q ss_pred HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccccccc
Q 015894 314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTA 393 (398)
Q Consensus 314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~ 393 (398)
+++||++||+|++|+|| |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+|+||||+++|+
T Consensus 260 v~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~- 332 (552)
T PRK03739 260 LMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFT- 332 (552)
T ss_pred HHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhh-
Confidence 99999999999999999 99999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 015894 394 NASKL 398 (398)
Q Consensus 394 ~~s~~ 398 (398)
|+|||
T Consensus 333 hesGi 337 (552)
T PRK03739 333 AFSGS 337 (552)
T ss_pred hccch
Confidence 99996
No 19
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-59 Score=463.10 Aligned_cols=292 Identities=16% Similarity=0.126 Sum_probs=253.4
Q ss_pred hhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc
Q 015894 84 KDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV 163 (398)
Q Consensus 84 ~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~ 163 (398)
|.-..|..... ..|+|+|||||+|++|..|+.++|++|++.|+++||+.||+|+|.... .|.+.+.+.++..
T Consensus 22 ~~w~~~~~~~~---p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~~ 93 (333)
T PRK14847 22 RAWPARRPAAA---PIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDER 93 (333)
T ss_pred CCCcccccCCC---CceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHhC
Confidence 33344444443 459999999999999999999999999999999999999999997642 2444444444432
Q ss_pred ---cCCcEEEEeCC-HhhHHHHHHcCC----CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-Ee
Q 015894 164 ---EGARFPVLTPN-LKGFEAAVAAGA----KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY-LS 234 (398)
Q Consensus 164 ---~~~~l~~l~~n-~~~ie~a~~~Gv----~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~-l~ 234 (398)
.++++++|+|. ..||+++++++. +.|++|+++||.|++.++++++++.++.+.+.|++||++|....+. +.
T Consensus 94 ~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~ 173 (333)
T PRK14847 94 RIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWI 173 (333)
T ss_pred CCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 26889999996 578999988765 5699999999999999999999999999999999999996521100 01
Q ss_pred eeecCCCCCCCCHHHHHHHHHHHHhC-C-----CCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccch
Q 015894 235 CVVGCPVEGMVPPSKVAYVSKQLYDM-G-----CSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQ 305 (398)
Q Consensus 235 ~~fg~~~~~r~~~~~l~~~a~~l~~~-G-----ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~Gl 305 (398)
..|+.+|++|++++|+.++++.+.+. | +++|+|+||+|.++|.+++++|+.++++++ .++|++|+|||+||
T Consensus 174 V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~Gl 253 (333)
T PRK14847 174 YEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGT 253 (333)
T ss_pred EEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCch
Confidence 12667899999999999999987555 5 777999999999999999999999998875 68999999999999
Q ss_pred HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894 306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI 385 (398)
Q Consensus 306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi 385 (398)
|+||+++|+++||++||+|++|+|| |+||++||+++++|+.+|+++++|+..|.++++++++++|+++|+|+||
T Consensus 254 A~ANslaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPi 327 (333)
T PRK14847 254 AVAAAELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPY 327 (333)
T ss_pred HHHHHHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCe
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015894 386 ALSK 389 (398)
Q Consensus 386 vG~~ 389 (398)
+|-+
T Consensus 328 vg~~ 331 (333)
T PRK14847 328 AWLD 331 (333)
T ss_pred ecCC
Confidence 9975
No 20
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=1.9e-57 Score=438.33 Aligned_cols=254 Identities=24% Similarity=0.302 Sum_probs=237.5
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH-HHHHHHHHh-ccCCcEEEEeC-CHh
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA-KDVMAAIQN-VEGARFPVLTP-NLK 176 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~-~~v~~~i~~-~~~~~l~~l~~-n~~ 176 (398)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|.. .+. +++++.+.+ .+++++.+++| +.+
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~-------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~ 73 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAM-------GEEEREAIRAIVALGLPARLIVWCRAVKE 73 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-------CHHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence 57999999999999999999999999999999999999997643 322 356666654 56899999996 789
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
+++++.++|++.|++++++||.|.+.++|+|++++++.+.+++++||++|+.|+ |++++.++++++++.+++++
T Consensus 74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~ 147 (259)
T cd07939 74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEV 147 (259)
T ss_pred HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 55678899999999999999
Q ss_pred HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
+.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus 148 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------ 220 (259)
T cd07939 148 AQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------ 220 (259)
T ss_pred HHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 99999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhC-CCCCccChHHHHHHHHHHHH
Q 015894 337 ASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFICK 373 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~-Gi~t~iDl~~L~~~~~~v~~ 373 (398)
|+||++||+++.+|+.. |+++++|+++|.++++++++
T Consensus 221 ~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 221 RAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999996 99999999999999999876
No 21
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=7.6e-57 Score=436.07 Aligned_cols=254 Identities=26% Similarity=0.325 Sum_probs=238.0
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CHh
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NLK 176 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~~ 176 (398)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|+ +|+ | ++.++.++ ..+++++.+|+| +.+
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~~ 73 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVKK 73 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCHh
Confidence 5799999999999999999999999999999999999999987 432 3 35555555 468899999996 789
Q ss_pred hHHHHHHcC----CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAG----AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~G----v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
+++.+.++| ++.|++++++||.|.+.|+|++++++++.+.+++++||++|+.|. |++|+.++++++++.+
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~ 147 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIE 147 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHH
Confidence 999999999 999999999999999999999999999999999999999999876 5678889999999999
Q ss_pred HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+++++.++|+++|+|+||+|.++|.+++++++.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus 148 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 148 VVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 9999999999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCC----CCCccChHHHHHHHHHHH
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLG----VRTNVDIRKLMIAGDFIC 372 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~G----i~t~iDl~~L~~~~~~v~ 372 (398)
|+||++||+++.+|+..| +++++|+++|.+++++++
T Consensus 228 ------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~ 267 (268)
T cd07940 228 ------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVS 267 (268)
T ss_pred ------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999876 999999999999999976
No 22
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=9.3e-56 Score=427.37 Aligned_cols=258 Identities=20% Similarity=0.247 Sum_probs=232.6
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CHh
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NLK 176 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~~ 176 (398)
.+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+| +..|++.+..+++..+ ....++.++.+ +.+
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~~~l~~~--~~~~~v~~~~r~~~~ 75 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSP---AASPQSRADCEAIAKL--GLKAKILTHIRCHMD 75 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHHHHHHhC--CCCCcEEEEecCCHH
Confidence 36999999999999999999999999999999999999999984 4456654443333222 22356666654 789
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
|+++|.++|++.|++++++||.|.+.|++++++++++.+.+++++||++|+.|+++++.+| +++++++.+++++
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~------r~~~~~l~~~~~~ 149 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF------RSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC------CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887655 5668999999999
Q ss_pred HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
+.++|+++|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe------ 222 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE------ 222 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 99999999999999999999999999999999988 79999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhC---CCCCccChHHHHHHHHHHHH
Q 015894 337 ASGNVATEDVVYMLNGL---GVRTNVDIRKLMIAGDFICK 373 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~---Gi~t~iDl~~L~~~~~~v~~ 373 (398)
|+||++||+++.+|+.. |+++++|+++|.++++++++
T Consensus 223 raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 223 RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999753 67789999999999999863
No 23
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=9.5e-55 Score=417.16 Aligned_cols=262 Identities=40% Similarity=0.579 Sum_probs=249.6
Q ss_pred EeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeCC-HhhH
Q 015894 101 VEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTPN-LKGF 178 (398)
Q Consensus 101 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~n-~~~i 178 (398)
+|||||||+|++++.|++++|+++++.|+++||+.||+|++..++++|++.|.+++++.+++ .+++++.+|+++ .+++
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 59999999999999999999999999999999999999999988888999999988888875 458999999998 8899
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
+++.++|++.|+++++.||.|.+.|+++++++.++.+.+.++++|+.|+++.++++.+++| .++++++.++++.+.
T Consensus 81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~ 156 (265)
T cd03174 81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888876543 378999999999999
Q ss_pred hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS 338 (398)
Q Consensus 259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra 338 (398)
++|+++|+|+||+|.++|.++.++++.+++.+|+++|++|+|||+|||+||+++|+++||++||+|++|||+ |+
T Consensus 157 ~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~ 230 (265)
T cd03174 157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RA 230 (265)
T ss_pred HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------cc
Confidence 999999999999999999999999999999999889999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHhCCCCCccChHHHHHHHHHHH
Q 015894 339 GNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFIC 372 (398)
Q Consensus 339 GNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~ 372 (398)
||++||+++.+|+..|+++++|++.|.+++++++
T Consensus 231 Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 264 (265)
T cd03174 231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYVE 264 (265)
T ss_pred cCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876
No 24
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=4.2e-55 Score=426.64 Aligned_cols=262 Identities=20% Similarity=0.207 Sum_probs=233.8
Q ss_pred EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH-HHHHHH-Hh---ccCCcEEEEeC
Q 015894 99 KIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK-DVMAAI-QN---VEGARFPVLTP 173 (398)
Q Consensus 99 ~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~-~v~~~i-~~---~~~~~l~~l~~ 173 (398)
..+|+|||||+|+++..|++++|++|++.|+++||+.||+|| |++.|.+ ++++.+ +. .+++++.+|+|
T Consensus 3 ~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf-------P~~~~~e~e~~~~i~~~~~~~~~~~~~al~r 75 (284)
T cd07942 3 IWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGF-------PSASQTDFDFVRELIEEDLIPDDVTIQVLTQ 75 (284)
T ss_pred cccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 467899999999999999999999999999999999999996 4556665 666666 43 14789999999
Q ss_pred CHhh-HHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCH
Q 015894 174 NLKG-FEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV-RGYLSCVVGCPVEGMVPP 247 (398)
Q Consensus 174 n~~~-ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v-~~~l~~~fg~~~~~r~~~ 247 (398)
|.++ +++++++ |++ .|++++++||.|+++|+|+|++++++.+.+++++||++|++. ...+-+.|+.+|++|+++
T Consensus 76 ~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~ 155 (284)
T cd07942 76 AREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTEL 155 (284)
T ss_pred CChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCH
Confidence 9765 9999998 675 799999999999999999999999999999999999999751 112333466788889999
Q ss_pred HHHHHHHHHHHhC---CCC---EEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 248 SKVAYVSKQLYDM---GCS---EISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 248 ~~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
+++.++++.+.++ |++ +|+|+||+|.++|.+++++++.+++.+| .++|++|+|||+|||+||+++|+++||
T Consensus 156 ~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~ 235 (284)
T cd07942 156 DFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGA 235 (284)
T ss_pred HHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCC
Confidence 9999999999887 544 9999999999999999999999999886 456999999999999999999999999
Q ss_pred CEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHH
Q 015894 319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK 373 (398)
Q Consensus 319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~ 373 (398)
++||+|++|+|+ |+||++||+++.+|+.+|+++++|+.+|.++++++++
T Consensus 236 ~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 236 DRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred CEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999 9999999999999999999999999999999999763
No 25
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-54 Score=431.19 Aligned_cols=287 Identities=19% Similarity=0.256 Sum_probs=267.2
Q ss_pred CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc-CCcEEEEe
Q 015894 94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE-GARFPVLT 172 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~ 172 (398)
.|+.+++.|+|||||+|++|..|++++|++|++.|+..||++||+|||+++. .|+++....++..+ +..+++++
T Consensus 54 ~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l~ 128 (560)
T KOG2367|consen 54 DVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTLI 128 (560)
T ss_pred CcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEee
Confidence 4678999999999999999999999999999999999999999999998753 46777766666555 46888999
Q ss_pred CC-HhhHHHHHHcCCC----EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCC
Q 015894 173 PN-LKGFEAAVAAGAK----EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVP 246 (398)
Q Consensus 173 ~n-~~~ie~a~~~Gv~----~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~ 246 (398)
|+ ..+++++.|++.+ +|++|.++||+|++.++++|++++++.+.++++.+|.+|. .++ |++++.+|++
T Consensus 129 rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rse 202 (560)
T KOG2367|consen 129 RCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRSE 202 (560)
T ss_pred ccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccCc
Confidence 96 5789999998664 5999999999999999999999999999999999999994 455 8899999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
++|+++++++...+|+.++.|+||+|+.+|.+++++|+.++.+.|+ +.|+.|||||+|+|+||+..++.|||++||+
T Consensus 203 ~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~ 282 (560)
T KOG2367|consen 203 LEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEV 282 (560)
T ss_pred HHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEE
Confidence 9999999999999999999999999999999999999999999885 5699999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCC---CCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLG---VRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~G---i~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
|++|+|| |+||++||+|+++|.-.| +...+|+.+|.++.++++++.++++|+++||+|.++|+ |+||+
T Consensus 283 ~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Ft-h~SGi 353 (560)
T KOG2367|consen 283 TINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFT-HESGI 353 (560)
T ss_pred Eeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEe-ecccc
Confidence 9999999 999999999999999888 88899999999999999999999999999999999999 99996
No 26
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=1e-53 Score=416.28 Aligned_cols=255 Identities=22% Similarity=0.268 Sum_probs=229.1
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcC-----CCEEEEecCCCCCcccCCCCHHHHHHHHHhcc-CCcEEEE
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSG-----LAVVEATSFVSPKWVPQLADAKDVMAAIQNVE-GARFPVL 171 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aG-----v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l 171 (398)
|+|+|+|||||+|.++.. ++++|++|++.|.++| |+.||+++|++ +|.+++.+.++... ...+.++
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~ 72 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW 72 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence 679999999999999875 9999999999999999 99999987654 57788887776422 3455665
Q ss_pred e-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH---
Q 015894 172 T-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP--- 247 (398)
Q Consensus 172 ~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~--- 247 (398)
. +|.+|+++|+++|++.|.+++++||.|++.|+|+|++++++.+.+++++||++|+.|++++. +.+|.++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e------d~~r~d~~~~ 146 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE------DITRADIYGF 146 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE------cccCCCcccc
Confidence 5 58999999999999999999999999999999999999999999999999999999986664 5566666
Q ss_pred --HHHHHHHHHHHhCCCC-EEEEccCcCcCCH-------HHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 248 --SKVAYVSKQLYDMGCS-EISLGDTIGVGTP-------GTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 248 --~~l~~~a~~l~~~Gad-~I~L~DT~G~~~P-------~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
+++.++++.+.++|++ +|+|+||+|.++| .+++++++.++++ +|+.+|++|+|||+|||+||+++|++
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~ 226 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL 226 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHH
Confidence 3666777777779999 8999999999988 6899999999988 57778999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCccChHHHHHHHHHHH
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFIC 372 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~-Gi~t~iDl~~L~~~~~~v~ 372 (398)
+||++||+|++|||+ |+||++||+++++|+.+ |+++++|+++|.+++++++
T Consensus 227 aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~ 278 (279)
T cd07947 227 YGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFE 278 (279)
T ss_pred hCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999 99999999999999997 9999999999999999975
No 27
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=1.9e-53 Score=411.36 Aligned_cols=250 Identities=24% Similarity=0.350 Sum_probs=227.9
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCcccCCCCHHHHHHHHH-hccCCcEEEE
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-----SPKWVPQLADAKDVMAAIQ-NVEGARFPVL 171 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l 171 (398)
|+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|++. +.++.|+..++++.++.++ ..+++++.++
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~ 80 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL 80 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence 689999999999999999999999999999999999999999642 2344566677878777774 5688999988
Q ss_pred e----CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894 172 T----PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247 (398)
Q Consensus 172 ~----~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~ 247 (398)
+ .+.++++++.++|++.|++++++|+.+ .+.+++++||+.|++++++++. .+++++
T Consensus 81 ~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~v~~~~~~------~~~~~~ 140 (263)
T cd07943 81 LLPGIGTVDDLKMAADLGVDVVRVATHCTEAD--------------VSEQHIGAARKLGMDVVGFLMM------SHMASP 140 (263)
T ss_pred ecCCccCHHHHHHHHHcCCCEEEEEechhhHH--------------HHHHHHHHHHHCCCeEEEEEEe------ccCCCH
Confidence 5 367899999999999999999998853 4578899999999999988874 357899
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G 327 (398)
+++.++++++.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus 141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~G 220 (263)
T cd07943 141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG 220 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccc
Confidence 99999999999999999999999999999999999999999998668999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHH
Q 015894 328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK 373 (398)
Q Consensus 328 lGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~ 373 (398)
||| |+||++||+++.+|+..|+++++|+++|.++++++.+
T Consensus 221 lG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 221 LGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred ccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 999 9999999999999999999999999999999999765
No 28
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=1.5e-53 Score=414.39 Aligned_cols=258 Identities=22% Similarity=0.286 Sum_probs=230.4
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC---
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNV--EGARFPVLTP--- 173 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~--- 173 (398)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|++. +|+ +.+ .++.++++ +++++.++++
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~ 73 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DTE-FFARAKKLKLKHAKLAAFGSTRR 73 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHH------HHH-HHHHHHHcCCCCcEEEEEecccc
Confidence 5899999999999999999999999999999999999999954 443 222 23344332 4788887764
Q ss_pred ------CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894 174 ------NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247 (398)
Q Consensus 174 ------n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~ 247 (398)
+..+++.++++|++.|+++.++||.|.+.++|+++++.++.+.+.+++||++|+.|.++.+. | .+.+++++
T Consensus 74 ~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~ 150 (273)
T cd07941 74 AGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANP 150 (273)
T ss_pred cCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCH
Confidence 23478899999999999999999999999999999999999999999999999999876443 3 24568899
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G 327 (398)
+++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus 151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~G 230 (273)
T cd07941 151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTING 230 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHH-hCCCC--CccChHHHHHHHHHHHH
Q 015894 328 LGGCPYAKGASGNVATEDVVYMLN-GLGVR--TNVDIRKLMIAGDFICK 373 (398)
Q Consensus 328 lGecp~a~graGNa~lE~vv~~L~-~~Gi~--t~iDl~~L~~~~~~v~~ 373 (398)
||| |+||+++|+++.+|+ .+|++ +++|+++|.++++++++
T Consensus 231 lGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 231 YGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred ccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 999 999999999999998 46765 48999999999999863
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=3e-52 Score=405.65 Aligned_cols=249 Identities=21% Similarity=0.275 Sum_probs=227.0
Q ss_pred EEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEEEEeC
Q 015894 100 IVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFPVLTP 173 (398)
Q Consensus 100 i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~ 173 (398)
|+|||||||+|++ +..|++++|++|++.|+++||+.||+|+++. .++. ..++++.++.++ ..+++++.+|+|
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r 78 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR 78 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence 5799999999998 7999999999999999999999999998753 2222 356677777776 468899999987
Q ss_pred C--------------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894 174 N--------------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC 239 (398)
Q Consensus 174 n--------------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~ 239 (398)
. ..+++++.++|++.|+++++.|+ ++.+.+.+++||++|+.|.+++++++
T Consensus 79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~-- 142 (275)
T cd07937 79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG-- 142 (275)
T ss_pred cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC--
Confidence 3 45789999999999999999987 47788999999999999998887654
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~ 319 (398)
.++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||+++|+++||+
T Consensus 143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~ 219 (275)
T cd07937 143 --SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVD 219 (275)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
+||+|++|||| |+||++||+++.+|+..|+++++|+++|.+++++++++.
T Consensus 220 ~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 220 IVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred EEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999999999876
No 30
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=1.5e-50 Score=403.76 Aligned_cols=254 Identities=26% Similarity=0.354 Sum_probs=225.2
Q ss_pred CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-----CC-cccCCCCHHHHHHHH-HhccCCcE
Q 015894 96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-----PK-WVPQLADAKDVMAAI-QNVEGARF 168 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-----~~-~~p~~~D~~~v~~~i-~~~~~~~l 168 (398)
++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+... -. ..|.. +.++.++.+ +..+++++
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~-~~~e~i~~~~~~~~~~~~ 80 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH-TDEEYIEAAAEVVKQAKI 80 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC-CHHHHHHHHHHhCCCCEE
Confidence 469999999999999999999999999999999999999999985321 11 11222 345666666 46788999
Q ss_pred EEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894 169 PVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM 244 (398)
Q Consensus 169 ~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r 244 (398)
.+|. + +.++++++.++|++.||++++.++. +.+.+.+++||++|++|.++++++ ++
T Consensus 81 ~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a------~~ 140 (337)
T PRK08195 81 AALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS------HM 140 (337)
T ss_pred EEEeccCcccHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec------cC
Confidence 9865 3 6789999999999999999877664 346788999999999999988854 57
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|+||+|||+|||+||+++|+++||++||+
T Consensus 141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~ 220 (337)
T PRK08195 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG 220 (337)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence 8999999999999999999999999999999999999999999999 688999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894 324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG 376 (398)
Q Consensus 324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g 376 (398)
|+.|||+ ++||++||+++.+|+.+|+++++|+.+|.++++++..-+-
T Consensus 221 Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~~ 267 (337)
T PRK08195 221 SLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPLM 267 (337)
T ss_pred cChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhhc
Confidence 9999999 9999999999999999999999999999999998776553
No 31
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.4e-51 Score=421.23 Aligned_cols=277 Identities=20% Similarity=0.295 Sum_probs=246.1
Q ss_pred CCCccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHH-hccCCc
Q 015894 94 VPGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQ-NVEGAR 167 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~-~~~~~~ 167 (398)
|+++|+|+|||||||+|+++ .+|++++++.|++.|+++|++.||+| |.++-++. -+|+|+.++.++ .+|+++
T Consensus 1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl--~Edpwerlr~lr~~~~nt~ 78 (499)
T PRK12330 1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFL--NEDPWERLRTFRKLMPNSR 78 (499)
T ss_pred CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc--CCCHHHHHHHHHHhCCCCe
Confidence 56789999999999999988 89999999999999999999999999 33322222 268999999998 579999
Q ss_pred EEEEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894 168 FPVLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL 233 (398)
Q Consensus 168 l~~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l 233 (398)
+++|+| |. .+++.++++|+|.||||+++||+ ++++.+++.+|+.|..++++|
T Consensus 79 lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i 144 (499)
T PRK12330 79 LQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTI 144 (499)
T ss_pred EEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEE
Confidence 999997 21 35789999999999999999986 566778899999999999999
Q ss_pred eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHH
Q 015894 234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 234 ~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANala 312 (398)
+++.+ | .+++++++++++++.++|+++|+|+||+|+++|.+++++|+++++++| +++|++|+|||+|||+||+++
T Consensus 145 ~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~la 220 (499)
T PRK12330 145 CYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220 (499)
T ss_pred EEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHH
Confidence 97652 3 468999999999999999999999999999999999999999999996 889999999999999999999
Q ss_pred HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh-----------CCCCCC
Q 015894 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL-----------GRTSGS 381 (398)
Q Consensus 313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~-----------g~~~~~ 381 (398)
|+++||++||+|++|||+ ++||++||+++.+|+.+|+++++|+++|.++++++.++. +...+.
T Consensus 221 AieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v 294 (499)
T PRK12330 221 AIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEI 294 (499)
T ss_pred HHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Confidence 999999999999999999 999999999999999999999999999999999988664 455556
Q ss_pred Ccc-cccccccccccCC
Q 015894 382 KTA-IALSKTSTANASK 397 (398)
Q Consensus 382 ~~p-ivG~~~f~~~~s~ 397 (398)
.++ +.|...|. |+|+
T Consensus 295 ~~~qiPGGm~sn-l~~Q 310 (499)
T PRK12330 295 FKSQIPGGMLSN-MESQ 310 (499)
T ss_pred ccCCCCCCchhh-HHHH
Confidence 666 88888877 7664
No 32
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.3e-50 Score=416.62 Aligned_cols=253 Identities=22% Similarity=0.300 Sum_probs=227.2
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHh-ccCCcEE
Q 015894 96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQN-VEGARFP 169 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~ 169 (398)
++|+|+|||||||+|++ +..|++++|++|++.|+++|++.||+| |.++-.++ -.|++++++.+++ +++++++
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~--~e~p~e~l~~l~~~~~~~~l~ 79 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFL--NEDPWERLRKIRKAVKKTKLQ 79 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccC--CCCHHHHHHHHHHhCCCCEEE
Confidence 36999999999999998 679999999999999999999999998 32221111 1468899998875 5899999
Q ss_pred EEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|+| |. .++++|+++|++.|++|+++||.+ ++.+++++||++|+.+++++++
T Consensus 80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence 8875 43 345899999999999999999963 3667899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
+++ | +++++++.++++++.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|++
T Consensus 146 t~~-p---~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAie 220 (448)
T PRK12331 146 TTS-P---VHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIE 220 (448)
T ss_pred ecC-C---CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHH
Confidence 764 3 689999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
+||++||+|++|||+ |+||++||+++.+|+..|+++++|+++|.+++++++++.
T Consensus 221 aGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r 274 (448)
T PRK12331 221 AGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIR 274 (448)
T ss_pred cCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999997664
No 33
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=1.5e-50 Score=392.00 Aligned_cols=249 Identities=17% Similarity=0.205 Sum_probs=220.1
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----cCCCCHHHHHHHHHhc-cCCcEEEEeCC
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV----PQLADAKDVMAAIQNV-EGARFPVLTPN 174 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~----p~~~D~~~v~~~i~~~-~~~~l~~l~~n 174 (398)
|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|++...... ..+.|.+.+.+..+.. +++++.++++.
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY 80 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC
Confidence 589999999999999999999999999999999999999998653211 1233555555554544 48999999864
Q ss_pred ----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 175 ----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 175 ----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
..+++.+.++|++.|+++++.++ ++.+.+++++||++|+.|.+++++++ +++++++
T Consensus 81 ~~~~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a~------~~~~~~~ 140 (266)
T cd07944 81 GNDDIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAIS------GYSDEEL 140 (266)
T ss_pred CCCCHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEeec------CCCHHHH
Confidence 47899999999999999987653 57788999999999999998888654 5899999
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG 329 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG 329 (398)
.++++++.++|+++|+|+||+|.++|.+++++++.++++++ +++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G 220 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG 220 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC
Confidence 99999999999999999999999999999999999999987 48999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHH-HHHHHHh
Q 015894 330 GCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAG-DFICKHL 375 (398)
Q Consensus 330 ecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~-~~v~~~~ 375 (398)
+ |+||++||+++.+|+.+ +++++|+++|.+++ +++....
T Consensus 221 ~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 221 R------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred C------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence 9 99999999999999988 78899999999999 7777655
No 34
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=4.6e-50 Score=399.58 Aligned_cols=254 Identities=27% Similarity=0.359 Sum_probs=222.7
Q ss_pred CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc-ccCCCCHHHHHHHHHhccCCcEE
Q 015894 96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-----SPKW-VPQLADAKDVMAAIQNVEGARFP 169 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~-~p~~~D~~~v~~~i~~~~~~~l~ 169 (398)
++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+.. +-.+ .|...|.+.+.+..+.++++++.
T Consensus 1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~ 80 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA 80 (333)
T ss_pred CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence 36999999999999999999999999999999999999999998431 1111 12333444444444567889999
Q ss_pred EEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894 170 VLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 170 ~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~ 245 (398)
+++ + +.++++.|.++|++.||++.+.++. +.+.+.++++|++|++|.++++++ .++
T Consensus 81 ~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s------~~~ 140 (333)
T TIGR03217 81 VLLLPGIGTVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMS------HMT 140 (333)
T ss_pred EEeccCccCHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcc------cCC
Confidence 776 4 6789999999999999999887764 345688999999999999988864 468
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
++++++++++.+.++|++.|+|+||+|.++|.++++++++++++++ +++|++|+|||+|||+||+++|+++||++||+|
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S 220 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDAS 220 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEee
Confidence 9999999999999999999999999999999999999999999985 689999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
+.|||+ ++||++||+++.+|+.+|+++++|+.+|.++++.+-.-+
T Consensus 221 l~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~ 265 (333)
T TIGR03217 221 LRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL 265 (333)
T ss_pred cccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence 999999 999999999999999999999999999999988765444
No 35
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=5.7e-50 Score=412.84 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=227.8
Q ss_pred ccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHHh-ccCCcEEE
Q 015894 97 FVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQN-VEGARFPV 170 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~~-~~~~~l~~ 170 (398)
+|+|+|||||||+|+. +..|++++|++|++.|+++|++.||+|..+. ..++ -.|++++++.+++ ++++++++
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl--~e~p~e~l~~l~~~~~~~~l~~ 79 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL--NENPWERLKEIRKRLKNTKIQM 79 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc--CCCHHHHHHHHHHhCCCCEEEE
Confidence 4899999999999998 4799999999999999999999999974321 2222 1478899998875 58999999
Q ss_pred EeC--CHh-------h-----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee
Q 015894 171 LTP--NLK-------G-----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV 236 (398)
Q Consensus 171 l~~--n~~-------~-----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~ 236 (398)
|+| |.. | +++|+++|++.|++|+++||. +++...+++||++|+.|+++++++
T Consensus 80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t 145 (467)
T PRK14041 80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYT 145 (467)
T ss_pred EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEec
Confidence 876 432 3 589999999999999999984 557788999999999999999998
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 237 VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 237 fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
++ | +++++++.++++++.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|+++
T Consensus 146 ~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAiea 220 (467)
T PRK14041 146 VS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEA 220 (467)
T ss_pred cC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHh
Confidence 75 4 578999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
||++||+|++|+|+ |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus 221 Gad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr 273 (467)
T PRK14041 221 GADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVR 273 (467)
T ss_pred CCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999998775
No 36
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=1.2e-48 Score=414.31 Aligned_cols=272 Identities=21% Similarity=0.259 Sum_probs=245.3
Q ss_pred CccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHh-ccCCcEE
Q 015894 96 GFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQN-VEGARFP 169 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~ 169 (398)
++|.|+|||||||+|+.+ .+|++++|++|++.|+++|++.||+| |.++.+++ ..|+|+.++.+++ +|+++++
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl--~edp~e~l~~l~~~~~~~~l~ 79 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL--NEDPWERLRKLKKALPNTPLQ 79 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC--CccHHHHHHHHHHhCCCCEEE
Confidence 369999999999999996 68999999999999999999999998 33333332 2578888888874 5899999
Q ss_pred EEeC--CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTP--NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~--n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|+| |.. ++++|.++|++.||+|+++||. +++...+++||++|..+++++++
T Consensus 80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 9976 443 4789999999999999999985 56778899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
+++ | .+++++++++++++.++|+++|+||||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|++
T Consensus 146 t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~ 220 (592)
T PRK09282 146 TTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE 220 (592)
T ss_pred ccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH
Confidence 773 4 468999999999999999999999999999999999999999999997 78999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCC--CCCCccccccccccc
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT--SGSKTAIALSKTSTA 393 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~--~~~~~pivG~~~f~~ 393 (398)
+||++||+|++|||+ |+||++||+++.+|+..|+++++|+.+|.+++++++++...- +++..+..+.++|.
T Consensus 221 aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v~~- 293 (592)
T PRK09282 221 AGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRVLI- 293 (592)
T ss_pred hCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccEEE-
Confidence 999999999999999 999999999999999999999999999999999999988655 67888899999998
Q ss_pred cc
Q 015894 394 NA 395 (398)
Q Consensus 394 ~~ 395 (398)
|+
T Consensus 294 ~~ 295 (592)
T PRK09282 294 HQ 295 (592)
T ss_pred Ec
Confidence 75
No 37
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=1.7e-49 Score=376.75 Aligned_cols=232 Identities=30% Similarity=0.447 Sum_probs=201.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CHhhHHHHH--
Q 015894 106 RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NLKGFEAAV-- 182 (398)
Q Consensus 106 RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~~~ie~a~-- 182 (398)
|||+|++++.|++++|++|++.|+++||++||+|++.... .+.+.+.+..+..++.++.++++ +.++++.++
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 75 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREALPNARLQALCRANEEDIERAVEA 75 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhhcccccceeeeehHHHHHHHHHh
Confidence 9999999999999999999999999999999999543221 23344444444667799999986 456666544
Q ss_pred --HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 183 --AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 183 --~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
++|++.+++++++||.|.+.++++++++.++.+.++++++|++|+.|. |++++.++++++++.++++++.++
T Consensus 76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAEA 149 (237)
T ss_dssp HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHHH
T ss_pred hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHHc
Confidence 599999999999999999999999999999999999999999999995 556788899999999999999999
Q ss_pred CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCC
Q 015894 261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGN 340 (398)
Q Consensus 261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGN 340 (398)
|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||++||+|++|||+ |+||
T Consensus 150 g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~Gn 223 (237)
T PF00682_consen 150 GADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAGN 223 (237)
T ss_dssp T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTSB
T ss_pred CCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCCC
Confidence 9999999999999999999999999999999889999999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHHhCC
Q 015894 341 VATEDVVYMLNGLG 354 (398)
Q Consensus 341 a~lE~vv~~L~~~G 354 (398)
++||+++.+|+.+|
T Consensus 224 ~~le~lv~~L~~~g 237 (237)
T PF00682_consen 224 APLEELVAALERMG 237 (237)
T ss_dssp -BHHHHHHHHHHT-
T ss_pred ccHHHHHHHHhhcC
Confidence 99999999999876
No 38
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=7e-48 Score=407.87 Aligned_cols=257 Identities=22% Similarity=0.257 Sum_probs=229.6
Q ss_pred CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC-cccC-CCCHHHHHHHHH-hccCCcEE
Q 015894 94 VPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK-WVPQ-LADAKDVMAAIQ-NVEGARFP 169 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~-~~p~-~~D~~~v~~~i~-~~~~~~l~ 169 (398)
|.++|+|+|||||||+|++ +.+|++++++.|++.|+++|++.||+|..+.-+ .+|. -+|+|+.++.++ .+|+++++
T Consensus 1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq 80 (593)
T PRK14040 1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ 80 (593)
T ss_pred CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 4668999999999999999 679999999999999999999999996322110 0121 258899999888 57899999
Q ss_pred EEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|+| |. .+++.++++|++.||+|+++||. +++...+++||++|..+++++++
T Consensus 81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 9987 21 24789999999999999999884 56788899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
++ +| .++++++.++++++.++|+++|+|+||+|.++|.+++++|+++++.+. ++|++|+|||.|||+||+++|++
T Consensus 147 t~-~p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAie 221 (593)
T PRK14040 147 TT-SP---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIE 221 (593)
T ss_pred ee-CC---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHH
Confidence 65 33 457999999999999999999999999999999999999999999984 78999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
+||++||+|++|||+ |+||++||+++.+|+..|+++++|+.+|.++++++.++.
T Consensus 222 AGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 222 AGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred cCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999875
No 39
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=3.7e-48 Score=409.56 Aligned_cols=250 Identities=20% Similarity=0.281 Sum_probs=225.7
Q ss_pred EEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEec----CCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC
Q 015894 100 IVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEATS----FVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP 173 (398)
Q Consensus 100 i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~ 173 (398)
|+|||||||+|+++ .+|++++|++|++.|+++|++.||+|. .+.-.++ ..|++++++.+++ .+++++++|+|
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~--~e~~~e~l~~l~~~~~~~~l~~L~R 78 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKALPNTPLQMLLR 78 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC--CCCHHHHHHHHHHhCCCCEEEEEEc
Confidence 58999999999984 689999999999999999999999982 2221222 2578999999985 78999999976
Q ss_pred --CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894 174 --NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC 239 (398)
Q Consensus 174 --n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~ 239 (398)
|.. ++++|+++|+|.|++|+++||. +++...+++||++|+.+++++++++ +
T Consensus 79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~-~ 143 (582)
T TIGR01108 79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTT-S 143 (582)
T ss_pred cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEecc-C
Confidence 433 3588999999999999999985 4577889999999999999999876 5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~ 319 (398)
| +++++++.++++++.++|+++|+||||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|+++||+
T Consensus 144 p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~ 219 (582)
T TIGR01108 144 P---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGAD 219 (582)
T ss_pred C---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCC
Confidence 5 368999999999999999999999999999999999999999999998 789999999999999999999999999
Q ss_pred EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894 320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG 376 (398)
Q Consensus 320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g 376 (398)
+||+|++|||+ |+||++||+++.+|+.+|+++++|+++|.+++++++++..
T Consensus 220 ~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 220 GIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred EEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999998753
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.3e-47 Score=391.73 Aligned_cols=261 Identities=18% Similarity=0.221 Sum_probs=231.7
Q ss_pred CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC--cccCCCCHHHHHHHHH-hccCCcEE
Q 015894 94 VPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK--WVPQLADAKDVMAAIQ-NVEGARFP 169 (398)
Q Consensus 94 ~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~--~~p~~~D~~~v~~~i~-~~~~~~l~ 169 (398)
|.++|+|+|||||||+|+. ..++++++.+.|++.|+++|++.||+|..+.-+ ..-..+|+|+.++.++ .+|+++++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq 88 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ 88 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence 5567999999999999995 567999999999999999999999997433211 0012368999999998 68999999
Q ss_pred EEeC--CH-------hh-----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTP--NL-------KG-----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~--n~-------~~-----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|.| |. ++ ++.|++.|+|.+|+|++.+|. ++++..++.+|+.|..+++.+++
T Consensus 89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~--------------~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP--------------RNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH--------------HHHHHHHHHHHHcCCEEEEEEEE
Confidence 9987 32 24 678999999999999999875 66788899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
+. +| .++.+|+.++++++.++|+++|+|+||+|.++|.+++++|+++++ .++++|++|+|||.|||+||+++|++
T Consensus 155 t~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAie 229 (468)
T PRK12581 155 TT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVE 229 (468)
T ss_pred Ee-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHH
Confidence 76 34 468999999999999999999999999999999999999999988 56789999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCC
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTS 379 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~ 379 (398)
+||++||+|++|+|+ ++||++||+++.+|+..|+++++|+++|.+++++++++...-.
T Consensus 230 AGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~ 287 (468)
T PRK12581 230 AGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYL 287 (468)
T ss_pred cCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999999999999999999999999999998764443
No 41
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=4.4e-46 Score=392.99 Aligned_cols=252 Identities=18% Similarity=0.241 Sum_probs=229.1
Q ss_pred ccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEEE
Q 015894 97 FVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFPV 170 (398)
Q Consensus 97 ~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~~ 170 (398)
+|.|+|+|||||+|+. ..++++++.+.|++.|+++|+..||+|..+. -.+ ..+|+|+.++.++ .+|++++++
T Consensus 3 ~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rf--l~edpwerl~~~r~~~pnt~lqm 80 (596)
T PRK14042 3 KTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRF--LKEDPWSRLRQLRQALPNTQLSM 80 (596)
T ss_pred ceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecc--cCCCHHHHHHHHHHhCCCCceEE
Confidence 6999999999999966 6789999999999999999999999985432 222 2368999999998 689999999
Q ss_pred EeC--CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee
Q 015894 171 LTP--NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV 236 (398)
Q Consensus 171 l~~--n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~ 236 (398)
|.| |.. .++.++++|+|.+|+|++.+|. ++++..++.+|+.|..+++.||++
T Consensus 81 L~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k~~G~~~~~~i~yt 146 (596)
T PRK14042 81 LLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIKSHKKHAQGAICYT 146 (596)
T ss_pred EeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHHHcCCEEEEEEEec
Confidence 986 432 3578899999999999999985 667788999999999999999986
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 237 VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 237 fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
. +| .++++++.++++++.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|+++
T Consensus 147 ~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAiea 221 (596)
T PRK14042 147 T-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLA 221 (596)
T ss_pred C-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHh
Confidence 4 44 578999999999999999999999999999999999999999999986 799999999999999999999999
Q ss_pred CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
||++||+|++|||+ ++||++||+++.+|+..|+++++|+++|.++++++.++.
T Consensus 222 Gad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr 274 (596)
T PRK14042 222 GCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVR 274 (596)
T ss_pred CCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999875
No 42
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=2.4e-44 Score=404.57 Aligned_cols=262 Identities=18% Similarity=0.168 Sum_probs=230.9
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCCC-cccC-CCCHHHHHHHHH-hccCCcEE
Q 015894 96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSS--GLAVVEATSFVSPK-WVPQ-LADAKDVMAAIQ-NVEGARFP 169 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~-~~p~-~~D~~~v~~~i~-~~~~~~l~ 169 (398)
++|.|+|||||||+|++ +.+|++++++.|++.|+++ |++.||+|..+.-+ .++. -+|+|+.++.++ .+|+++++
T Consensus 531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q 610 (1146)
T PRK12999 531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQ 610 (1146)
T ss_pred CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence 46999999999999998 6899999999999999999 99999999743210 0111 268999999998 57999999
Q ss_pred EEeCC-------------Hhh-HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTPN-------------LKG-FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~n-------------~~~-ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|+|. .++ ++.++++|++.||+|++.||+ ++++..++.+|+.|..+++.+++
T Consensus 611 ~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~vk~~g~~~~~~i~y 676 (1146)
T PRK12999 611 MLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAVRETGKIAEAAICY 676 (1146)
T ss_pred EEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 99973 123 789999999999999998874 55778899999999988888887
Q ss_pred eecCCCCC--CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH
Q 015894 236 VVGCPVEG--MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 236 ~fg~~~~~--r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA 313 (398)
+-.-.|.+ .++++++.++++++.++|+++|+|+||+|+++|.+++++|+++|+++ +++|++|+|||.|||+||+++|
T Consensus 677 tg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA 755 (1146)
T PRK12999 677 TGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAA 755 (1146)
T ss_pred EecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHH
Confidence 51112333 37999999999999999999999999999999999999999999998 4799999999999999999999
Q ss_pred HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCC
Q 015894 314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT 378 (398)
Q Consensus 314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~ 378 (398)
+++||++||+|++|||+ ++||++||+++++|+..|+++++|+++|.+++++++++...-
T Consensus 756 ~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y 814 (1146)
T PRK12999 756 AEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYY 814 (1146)
T ss_pred HHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999 999999999999999999999999999999999999877444
No 43
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=7.1e-42 Score=340.54 Aligned_cols=280 Identities=19% Similarity=0.225 Sum_probs=251.5
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC-HhhH
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN-LKGF 178 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-~~~i 178 (398)
|+|||||||.|..++.|++++|+++++.|.++|++.||+|++.. .|++.+..+++...+ ....+.+++++ ..++
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 75 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCRLDDA 75 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCCHHHH
Confidence 57999999999999999999999999999999999999999653 333333333333322 23457778886 7899
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
+.+.++|++.+.++.+.|+.+...+++++.++....+...++.|++.|+.+..+++. ..+.+++++.++++.+.
T Consensus 76 ~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~------~~~~~~~~~~~~~d~~~ 149 (344)
T TIGR02146 76 KVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAED------TFRSELADLLSIYETVG 149 (344)
T ss_pred HHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEee------CCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998866664 45788999999999999
Q ss_pred hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS 338 (398)
Q Consensus 259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra 338 (398)
++|++.|+++||.|.++|.+++.+++.+++..|.+++++|+|||.|+|++|+++|+.+||+++|+|++|||+ ++
T Consensus 150 ~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~ 223 (344)
T TIGR02146 150 VFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RN 223 (344)
T ss_pred HCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CC
Confidence 999999999999999999999999999999888889999999999999999999999999999999999999 88
Q ss_pred CCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894 339 GNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398 (398)
Q Consensus 339 GNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~ 398 (398)
||++++.++..|.. .|+. .+|+..+.++++.+....++++++++|++|.++|+ |+||+
T Consensus 224 G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~-~~~g~ 282 (344)
T TIGR02146 224 GITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFT-HKAGI 282 (344)
T ss_pred CCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhh-cccch
Confidence 99999999998886 4664 48999999999999999999999999999999999 99985
No 44
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=5.1e-43 Score=345.91 Aligned_cols=253 Identities=23% Similarity=0.334 Sum_probs=230.0
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEE
Q 015894 96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFP 169 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~ 169 (398)
++|+|+|++||||+|+. ..++.+++.+.|++.|++.|+.++|+|..+. -++. .+|+|+.++.+| .+++++++
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfL--nEDPWeRLr~lk~~~~nT~LQ 81 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKAVPNTKLQ 81 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHh--cCCHHHHHHHHHHhCCCcHHH
Confidence 47999999999999998 5689999999999999999999999985432 2222 279999999999 58999999
Q ss_pred EEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894 170 VLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 170 ~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~ 235 (398)
+|.| |+.| ++++++.|+|.+|+|+.+||+ ++++.+++.+|++|..+++.+|+
T Consensus 82 MLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 82 MLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred HHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCceeEEEEEe
Confidence 9986 5433 468899999999999999996 56778899999999999999998
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
.. +|.+ +.+++.++++++.++|+|.|||+|++|+++|...+++|+++++.+| ++|.+|+|.|-|||.++.++|++
T Consensus 148 T~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvE 222 (472)
T COG5016 148 TT-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVE 222 (472)
T ss_pred cc-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHH
Confidence 75 5654 7899999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
||||+||+++..|.+ +++++++|.++.+|+..++++|+|++.|.++++++.++.
T Consensus 223 AGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr 276 (472)
T COG5016 223 AGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR 276 (472)
T ss_pred hCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999988654
No 45
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=1.8e-41 Score=380.28 Aligned_cols=258 Identities=17% Similarity=0.178 Sum_probs=230.3
Q ss_pred CccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhc--CCCEEEEecCC----CCCcccCCCCHHHHHHHHH-hccCCc
Q 015894 96 GFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSS--GLAVVEATSFV----SPKWVPQLADAKDVMAAIQ-NVEGAR 167 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~----~~~~~p~~~D~~~v~~~i~-~~~~~~ 167 (398)
++|.|+|+|||||+|+.- .++.+++.+.|++.++++ |+..+|+|..+ +-++. .+|+|+.++.+| .+|++.
T Consensus 529 ~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl--~EdPwerl~~~r~~~pn~~ 606 (1143)
T TIGR01235 529 KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFL--HEDPWERLEDLRKGVPNIL 606 (1143)
T ss_pred CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHh--cCCHHHHHHHHHHhCCCCc
Confidence 469999999999999995 689999999999999995 99999998543 22222 279999999998 689999
Q ss_pred EEEEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894 168 FPVLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL 233 (398)
Q Consensus 168 l~~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l 233 (398)
++||.| |..+ ++.++++|+|.+|+|+++||+ ++++..++.+|+.|..++++|
T Consensus 607 ~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~--------------~n~~~~~~~~~~~g~~~~~~i 672 (1143)
T TIGR01235 607 FQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWV--------------ENMRVGMDAVAEAGKVVEAAI 672 (1143)
T ss_pred eeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCH--------------HHHHHHHHHHHHcCCEEEEEE
Confidence 999997 4332 467889999999999999985 778889999999999999999
Q ss_pred eeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894 234 SCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL 311 (398)
Q Consensus 234 ~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal 311 (398)
|++-.- |....++++|+.++++++.++|+++|+|+||+|+++|.+++++|+++++++ +++|++|+|||.|+|+||++
T Consensus 673 ~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~l 751 (1143)
T TIGR01235 673 CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASML 751 (1143)
T ss_pred EEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHH
Confidence 986311 222246899999999999999999999999999999999999999999998 57999999999999999999
Q ss_pred HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894 312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG 376 (398)
Q Consensus 312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g 376 (398)
+|+++||++||+|++|||+ +++++++|.++.+|+..|+++++|+++|.+++++++++..
T Consensus 752 aA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~ 810 (1143)
T TIGR01235 752 AAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRN 810 (1143)
T ss_pred HHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999998643
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.97 E-value=4.9e-31 Score=276.56 Aligned_cols=257 Identities=19% Similarity=0.211 Sum_probs=225.3
Q ss_pred CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhc--CCCEEEEec----CCCCCcccCCCCHHHHHHHHH-hccCCc
Q 015894 96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSS--GLAVVEATS----FVSPKWVPQLADAKDVMAAIQ-NVEGAR 167 (398)
Q Consensus 96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~-~~~~~~ 167 (398)
+.+.++|+|+||++|+. ..++.+.+..+|++...++ ....+|+|- .++.+++ .+|+|+.++.+| .+||+.
T Consensus 534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL--~EdPWeRL~~lRk~~PNvl 611 (1149)
T COG1038 534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFL--KEDPWERLERLRKAVPNVL 611 (1149)
T ss_pred cceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHh--ccCHHHHHHHHHHhCCchH
Confidence 46999999999999998 3578888889999999776 678899974 3444443 279999999998 589999
Q ss_pred EEEEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894 168 FPVLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL 233 (398)
Q Consensus 168 l~~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l 233 (398)
++||.| |-.+ ++.|...|+|.+|||+++|.+ +.++-.++.+++.|..+++++
T Consensus 612 fQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNwv--------------~~M~vaidAV~e~gkv~Eati 677 (1149)
T COG1038 612 FQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNWV--------------EQMRVAIDAVREAGKVAEATI 677 (1149)
T ss_pred HHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcch--------------hhhhhHHHHHHhcCCeEEEEE
Confidence 999976 3222 478889999999999998764 667788899999999999999
Q ss_pred eeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894 234 SCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL 311 (398)
Q Consensus 234 ~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal 311 (398)
|++-.- |....++.+||.++++++.++|++++.|+|++|++.|...+.||++||+.+ ++||++|+||+.|.++|..+
T Consensus 678 CYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~ 756 (1149)
T COG1038 678 CYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYL 756 (1149)
T ss_pred EeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHHH
Confidence 985322 323357999999999999999999999999999999999999999999998 67999999999999999999
Q ss_pred HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
+|++||+|+||+++..|.+ -+.++++-.++.+|.....++++|.+.+.+++.|++.+-
T Consensus 757 aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR 814 (1149)
T COG1038 757 AAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVR 814 (1149)
T ss_pred HHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999988889999999999999999765
No 47
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.95 E-value=2.9e-28 Score=251.74 Aligned_cols=264 Identities=18% Similarity=0.173 Sum_probs=225.9
Q ss_pred CCCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHH--hcCCCEEEEec----CCCCCcccCCCCHHHHHHHHH-hcc
Q 015894 93 RVPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLV--SSGLAVVEATS----FVSPKWVPQLADAKDVMAAIQ-NVE 164 (398)
Q Consensus 93 ~~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~--~aGv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~-~~~ 164 (398)
+.| ...|+|+|+||..|+. ..++.+.+-..|++.-. -+|...+|.|. .++.++. .+++|+.++.+| .+|
T Consensus 556 n~~-g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFL--hEcPWeRL~~lRkliP 632 (1176)
T KOG0369|consen 556 NHP-GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFL--HECPWERLRELRKLIP 632 (1176)
T ss_pred cCC-CceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHH--hcChHHHHHHHHHhCC
Confidence 345 4889999999999998 34677788888888764 45899999974 3344433 268999999998 579
Q ss_pred CCcEEEEeC--CHh------h------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894 165 GARFPVLTP--NLK------G------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR 230 (398)
Q Consensus 165 ~~~l~~l~~--n~~------~------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~ 230 (398)
++.+++|.| |.. | .+.|.+.|+|.+|+|+++++. .++.--++.+++.|..|+
T Consensus 633 NIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVE 698 (1176)
T KOG0369|consen 633 NIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVE 698 (1176)
T ss_pred CCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEE
Confidence 999999876 221 2 378999999999999998763 556667889999999999
Q ss_pred EEEeeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH
Q 015894 231 GYLSCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS 308 (398)
Q Consensus 231 ~~l~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A 308 (398)
+.+|++-.. |.-+.++.+||..++++++.+|.++++|+|++|++.|...+-+|.++|+.+|++||++|.||+-|-|+|
T Consensus 699 Aai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVA 778 (1176)
T KOG0369|consen 699 AAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVA 778 (1176)
T ss_pred EEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHH
Confidence 999986322 323458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCC
Q 015894 309 NILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTS 379 (398)
Q Consensus 309 NalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~ 379 (398)
..+++..||||.||+++..|.+ -+.++++..+++.|+..-++|+++++.+.+.+.|+++.-..--
T Consensus 779 sMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYa 843 (1176)
T KOG0369|consen 779 SMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYA 843 (1176)
T ss_pred HHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999 9999999999999998888999999999999999998764433
No 48
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=98.56 E-value=1.8e-14 Score=143.69 Aligned_cols=140 Identities=14% Similarity=0.020 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCCC-EEEEccCcCcCCHHHHHHHHHHHHhhC--------------C-CCeEEEEeCCccchHHHHHHH
Q 015894 249 KVAYVSKQLYDMGCS-EISLGDTIGVGTPGTVIPMLEAVLDAV--------------P-VDKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~lv~~l~~~~--------------p-~~~l~~H~Hnd~GlA~ANala 312 (398)
.+...++.+.+.|.+ .+.+.|+. ...|..+.+++..+...- | .+...+|+||+.|++++|++.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H 189 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH 189 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 334455555667765 57778875 456777877777776432 2 245788999999999999999
Q ss_pred HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CCC-CCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LGV-RTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT 390 (398)
Q Consensus 313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~Gi-~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~ 390 (398)
+...|...+..|++|+|+ |+||++++ +..|.+ .|. ++.+++..|.....++..-++..++.++|++|.+.
T Consensus 190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~ 261 (344)
T TIGR02146 190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG 261 (344)
T ss_pred ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999996 333332 343 23455666666665555556778899999999999
Q ss_pred cccccCCC
Q 015894 391 STANASKL 398 (398)
Q Consensus 391 f~~~~s~~ 398 (398)
|+ |+|++
T Consensus 262 ~~-~~~~~ 268 (344)
T TIGR02146 262 VT-IPFNN 268 (344)
T ss_pred CC-CCCCC
Confidence 99 99875
No 49
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.32 E-value=1.9e-05 Score=81.83 Aligned_cols=170 Identities=21% Similarity=0.204 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~ 190 (398)
..+.++++++++.+.+.|++.||+|++... ....+.+.+..+..+...+...++. ..+++.+.++|++.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-----~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAGTPLIK-----SEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-----HhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 578899999999999999999999853210 0122333333333333333333322 3488999999999999
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
+....++ ..+.+++++++++|+.+...+ ++++ ++. +.++.+.+.|+|.|.+.-
T Consensus 87 v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~----e~~~~a~~~GaD~I~~~p- 139 (430)
T PRK07028 87 ILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV----KRAVELEELGVDYINVHV- 139 (430)
T ss_pred EecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH----HHHHHHHhcCCCEEEEEe-
Confidence 8644322 123567889999999876321 1111 122 235667789999987652
Q ss_pred cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 271 IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 271 ~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
|. ..+....+.++.+++.++ +||.+|+ |....|+..++++||+.|=
T Consensus 140 -g~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 140 -GIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred -ccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 22 122233457788877665 6899988 8999999999999998654
No 50
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.30 E-value=0.00016 Score=71.73 Aligned_cols=228 Identities=12% Similarity=0.122 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE 179 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie 179 (398)
..++.++.++.++...+.|+..|-+.....|..- .....++++.+++ .++..+.++++ ..+.++
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~ 111 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD--IEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLK 111 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence 3589999999999999999999888754333210 1112345555553 35677766653 134578
Q ss_pred HHHHcCCCEEE-Eec-cCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 180 AAVAAGAKEVA-IFA-SASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 180 ~a~~~Gv~~v~-i~~-~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+..++|++.+. +-. ..++-..+... +.+.++ ..++++.|++.|+.+..+++ +|.+ -+++...+.+.
T Consensus 112 ~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~----~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~ 181 (309)
T TIGR00423 112 RLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDE----WLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLL 181 (309)
T ss_pred HHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHH
Confidence 88999999774 211 12233222221 224443 34778999999999987666 6644 25677777777
Q ss_pred HHHhCCCCEE------E----EccCc-------CcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhC
Q 015894 256 QLYDMGCSEI------S----LGDTI-------GVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 256 ~l~~~Gad~I------~----L~DT~-------G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
.+.+.+.+.. = -.+|- ...+|.+...+++..|-.+|.++ |..-. +++|.- -...++.+|
T Consensus 182 ~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~~~l~~G 258 (309)
T TIGR00423 182 RIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQVALEFG 258 (309)
T ss_pred HHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHHHHHhCC
Confidence 7877765421 1 13552 23677888888888887777532 44322 455543 247889999
Q ss_pred CCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894 318 ISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR 356 (398)
Q Consensus 318 a~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~ 356 (398)
|+-+++|+..====|.|+...+ .+..++++..+++.|..
T Consensus 259 and~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~ 298 (309)
T TIGR00423 259 ANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV 298 (309)
T ss_pred CccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 9999988732110122222233 45789999999888763
No 51
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.26 E-value=0.00015 Score=72.76 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=138.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE 179 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie 179 (398)
..++.++.++.++.+.+.|++.|-+.....|.. + .....++++.+++ .+++.+.++++ ..+.++
T Consensus 70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~ 147 (340)
T TIGR03699 70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDL-G-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLE 147 (340)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHH
Confidence 358999999999999999999998864433321 1 0112344555553 34554433322 145677
Q ss_pred HHHHcCCCEEEE--eccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 180 AAVAAGAKEVAI--FASASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 180 ~a~~~Gv~~v~i--~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
...++|++.+.- .-..++-..+.-. .+|.++. .++++.+++.|+.+..+++ +| .. -+++...+.++
T Consensus 148 ~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~v~~~~i--iG-lg---Et~ed~~~~l~ 217 (340)
T TIGR03699 148 RLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLPTTATMM--FG-HV---ETLEDRIEHLE 217 (340)
T ss_pred HHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeE--ee-CC---CCHHHHHHHHH
Confidence 888999997752 1123344333321 2344443 5778999999999876666 55 22 25677778888
Q ss_pred HHHhCCCCE------EEE----ccCc----CcCCHHHHHHHHHHHHhhCCCC-eEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894 256 QLYDMGCSE------ISL----GDTI----GVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILASLQMGIST 320 (398)
Q Consensus 256 ~l~~~Gad~------I~L----~DT~----G~~~P~~v~~lv~~l~~~~p~~-~l~~H~Hnd~GlA~ANalaAl~aGa~~ 320 (398)
.+.+.+.+. |-+ .+|- ...+|.+...+++..|-.+|+. .|..-. ...|. .....|+.+||+-
T Consensus 218 ~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g~--~~~~~~l~~Gan~ 294 (340)
T TIGR03699 218 RIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQGK--EVGQLALHFGAND 294 (340)
T ss_pred HHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccCh--HHHHHHHhcCCcc
Confidence 888877654 221 2332 2467889999999988888853 132222 23333 3456789999999
Q ss_pred EeeccccCCCCCCCCCCCCCcc---HHHHHHHHHhCCCC
Q 015894 321 VDSSVSGLGGCPYAKGASGNVA---TEDVVYMLNGLGVR 356 (398)
Q Consensus 321 VD~Sv~GlGecp~a~graGNa~---lE~vv~~L~~~Gi~ 356 (398)
+++++.. |. |.. .+|..+ +++++.+++++|..
T Consensus 295 ~~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~ 329 (340)
T TIGR03699 295 FGSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFI 329 (340)
T ss_pred CCCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCC
Confidence 9988763 11 111 344433 79999999988874
No 52
>PRK07094 biotin synthase; Provisional
Probab=98.20 E-value=0.00032 Score=69.80 Aligned_cols=200 Identities=15% Similarity=0.093 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEe
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~ 192 (398)
.++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.+++.++..+..-. .+.+.++...++|++.+.+-
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence 46899999999999999999998864332211 0 11233444444433444433222 35677889999999999875
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----- 267 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----- 267 (398)
+-..+-.....++.+ ...+...+.++.+++.|+.+..+++ +|.|.. +.+.+.+.++.+.+++++.+.+
T Consensus 147 lEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ed~~~~l~~l~~l~~~~v~~~~~~P 219 (323)
T PRK07094 147 HETADKELYAKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TLEDLADDILFLKELDLDMIGIGPFIP 219 (323)
T ss_pred cccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CHHHHHHHHHHHHhCCCCeeeeecccc
Confidence 444322222334332 2345566778999999998876666 565544 5688888888899999886543
Q ss_pred -ccC----cCcCCHHHHHHHHHHHHhhCCCCeE----EEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894 268 -GDT----IGVGTPGTVIPMLEAVLDAVPVDKL----AVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328 (398)
Q Consensus 268 -~DT----~G~~~P~~v~~lv~~l~~~~p~~~l----~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl 328 (398)
++| .....+.++.++++..|..+|+..| ++-.+... -...++.+||+.+=+++..-
T Consensus 220 ~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~~~ 284 (323)
T PRK07094 220 HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLTPG 284 (323)
T ss_pred CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCCch
Confidence 221 1234567788899999888886433 33233222 23488999999776665433
No 53
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.20 E-value=0.00018 Score=72.56 Aligned_cols=226 Identities=14% Similarity=0.125 Sum_probs=140.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE 179 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie 179 (398)
..++.++.++.++.+.+.|+..|-+.....|..- .....++++.+++ .++..+.++++ ..+.++
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~--~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~ 145 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLD--GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALK 145 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence 4589999999999999999999888743333210 1112344555553 35666665421 234578
Q ss_pred HHHHcCCCEEEEeccCchHHHhh---hcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 180 AAVAAGAKEVAIFASASESFSKS---NIN---CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 180 ~a~~~Gv~~v~i~~~~Sd~~~~~---~~~---~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
+..++|++.+.. +..+.+... ++. .+.+ ...+.++.|+++|+.+...++ +|.+ + +.+...+.
T Consensus 146 ~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~~~~~~----~~~~~i~~a~~~Gi~v~s~~i--~G~~-E---t~ed~~~~ 213 (343)
T TIGR03551 146 RLKEAGLDSMPG--TAAEILDDEVRKVICPDKLSTA----EWIEIIKTAHKLGIPTTATIM--YGHV-E---TPEHWVDH 213 (343)
T ss_pred HHHHhCcccccC--cchhhcCHHHHHhcCCCCCCHH----HHHHHHHHHHHcCCcccceEE--EecC-C---CHHHHHHH
Confidence 889999998762 112332211 111 1333 335788999999999987665 5644 2 45777777
Q ss_pred HHHHHhCCCCE------EEEc----cCc--------CcCCHHHHHHHHHHHHhhCCCC--eEEEEeCCccchHHHHHHHH
Q 015894 254 SKQLYDMGCSE------ISLG----DTI--------GVGTPGTVIPMLEAVLDAVPVD--KLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 254 a~~l~~~Gad~------I~L~----DT~--------G~~~P~~v~~lv~~l~~~~p~~--~l~~H~Hnd~GlA~ANalaA 313 (398)
+..+.+++.+. |-++ .|- ..++|.+...+++..|-.+|+. .|..-. .++|.. ....+
T Consensus 214 l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~--~~~~~ 290 (343)
T TIGR03551 214 LLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLGKK--LAQVA 290 (343)
T ss_pred HHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccCHH--HHHHH
Confidence 77777666542 2222 332 2357889999999988878863 444444 345543 34788
Q ss_pred HHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894 314 LQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR 356 (398)
Q Consensus 314 l~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~ 356 (398)
+.+||+-+++|+..=--=|-|+..++ ....++++...+..|..
T Consensus 291 l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~ 334 (343)
T TIGR03551 291 LRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRI 334 (343)
T ss_pred HhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 99999999988754100122222333 34779999999888874
No 54
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.04 E-value=0.00092 Score=67.66 Aligned_cols=229 Identities=15% Similarity=0.107 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-------------CHhhHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-------------NLKGFEA 180 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------n~~~ie~ 180 (398)
.++.++.++.++...+.|+..|-+.+...|.. + .....++++.++ ..|++.+.++++ ..+.+++
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~-~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNL-P-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 47999999999999999999999886555431 1 112234455555 347777776542 1234788
Q ss_pred HHHcCCCEEE-Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 181 AVAAGAKEVA-IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 181 a~~~Gv~~v~-i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
..++|++.+. .-. +.++...+ ++..+ ....++..++++.|+++|+++...++ +|.. + ++++.++.+..+.
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Glg-E---t~edrv~~l~~Lr 227 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGHI-E---TPAHRVDHMLRLR 227 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeCC-C---CHHHHHHHHHHHH
Confidence 8999999775 211 11222211 22211 11234555778999999999987776 5532 2 4677777777777
Q ss_pred hCCCCE------EEE----ccCc------CcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 259 DMGCSE------ISL----GDTI------GVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 259 ~~Gad~------I~L----~DT~------G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+.+.+. |-+ .+|- ...+|.+...+++..|-.+|+++ |-.- -...|. ..+..++.+||+-+
T Consensus 228 ~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~-w~~~~~--~~~~~~L~~Gand~ 304 (351)
T TIGR03700 228 ELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAY-WVMLGL--KLAQVALAFGVNDL 304 (351)
T ss_pred HhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc-ccccCH--HHHHHHHhcCCCCC
Confidence 766543 333 2443 45788888998888887677521 1111 011233 35688999999999
Q ss_pred eeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894 322 DSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR 356 (398)
Q Consensus 322 D~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~ 356 (398)
++|+..=--=|-|+...+ .+..++++..++..|..
T Consensus 305 ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~ 340 (351)
T TIGR03700 305 DGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRV 340 (351)
T ss_pred CccCccceeeccccCCCCCCCCHHHHHHHHHHcCCC
Confidence 888763111111211222 46889999999988874
No 55
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.02 E-value=0.00062 Score=66.11 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHHhc----cCCcEEEEe-CCH--
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQNV----EGARFPVLT-PNL-- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~~~----~~~~l~~l~-~n~-- 175 (398)
-+.+.-+++++.|.+.|++.||+|+|.+.+. .|.. ...+.+++.++++ .++.+..|+ .|.
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~ 100 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF 100 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence 4678889999999999999999999876321 0100 0123444444432 344544444 453
Q ss_pred ----h-hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 176 ----K-GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 176 ----~-~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
+ =++.+.++|++.+-+.+- ..+...+.++.+|++|+....-++ |. ++++.+
T Consensus 101 ~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~-----P~---T~~eri 156 (256)
T TIGR00262 101 RKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVA-----PN---ADDERL 156 (256)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEEC-----CC---CCHHHH
Confidence 2 256788999998887532 124456788999999998642222 32 356666
Q ss_pred HHHHHHHHhCC-CCEEEEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894 251 AYVSKQLYDMG-CSEISLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV 321 (398)
Q Consensus 251 ~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V 321 (398)
..+++. ..| +..+......|.- .+..+.++++.+|+..+ .+|.+ ++|.. -.++-.++++||+.|
T Consensus 157 ~~i~~~--~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~v----gfGI~~~e~~~~~~~~GADgv 224 (256)
T TIGR00262 157 KQIAEK--SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPVLV----GFGISKPEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHHh--CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence 666543 123 2234555667763 46679999999998754 24444 44444 457777889999854
No 56
>PRK06256 biotin synthase; Validated
Probab=97.97 E-value=0.0042 Score=62.16 Aligned_cols=219 Identities=15% Similarity=0.054 Sum_probs=135.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec-CCCCCcccCCCCHHHHHHHHH---hccCCcEEEEe--CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMAAIQ---NVEGARFPVLT--PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~--~n~~~ie~a~~~Gv~~ 188 (398)
..+.++.++.++.+.+.|+..+-+.. ...|. ..+.+.+.+.++ +.++..+.+-. .+.+.++...++|++.
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~ 165 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDR 165 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCE
Confidence 46899999999999999987665432 22221 112234444444 33444443322 2567788899999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL- 267 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L- 267 (398)
+.+..-.|+...+ +++.+ ...+...++++.+++.|+.+...+. +|. . -+.+...+.++.+.+++++.+.+
T Consensus 166 v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g---Et~ed~~~~~~~l~~l~~~~v~i~ 236 (336)
T PRK06256 166 YNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G---ESLEDRVEHAFFLKELDADSIPIN 236 (336)
T ss_pred EecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---CCHHHHHHHHHHHHhCCCCEEeec
Confidence 8885544664433 33322 2345556778899999998876555 443 1 25788888888899999987654
Q ss_pred -----ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894 268 -----GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS 338 (398)
Q Consensus 268 -----~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra 338 (398)
+.| ....+|.++.+++..+|-.+|+..|-+=++-..-+.-.. -+++ +||+.+=+. ++=- ..
T Consensus 237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~~~g--~~lt------~~ 306 (336)
T PRK06256 237 FLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSVIVG--NYLT------TV 306 (336)
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCceeeEC--Cccc------CC
Confidence 343 234678899999999998889877766555433232222 2233 688754221 1112 45
Q ss_pred CCccHHHHHHHHHhCCCCC
Q 015894 339 GNVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 339 GNa~lE~vv~~L~~~Gi~t 357 (398)
|+...+++ .+++++|+..
T Consensus 307 g~~~~~d~-~~~~~~g~~~ 324 (336)
T PRK06256 307 GQPATADL-DMIEDLGFEI 324 (336)
T ss_pred CCChHHHH-HHHHHCCCCc
Confidence 66655555 4777788754
No 57
>PRK08445 hypothetical protein; Provisional
Probab=97.96 E-value=0.0014 Score=66.33 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=138.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH---HHHHHHH-hccCCcEEEEeC-------------CHh
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK---DVMAAIQ-NVEGARFPVLTP-------------NLK 176 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~---~v~~~i~-~~~~~~l~~l~~-------------n~~ 176 (398)
..++.++.++.++...+.|...|-+.....|. .+.+ ++++.++ ..|+.++.++.+ ..+
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e 145 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKE 145 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHH
Confidence 35799999999999999999876443222222 1333 4444555 457777766542 135
Q ss_pred hHHHHHHcCCCEEE-E-eccCchHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVA-I-FASASESFSKSN--INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~-i-~~~~Sd~~~~~~--~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
.+++..++|++.+. + .=+.+|...+.- -++|.++. .++++.|+++|+++...++ +|.. + +++...+
T Consensus 146 ~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~-E---t~edr~~ 215 (348)
T PRK08445 146 VLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV-E---NDEEIIE 215 (348)
T ss_pred HHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC-C---CHHHHHH
Confidence 67888999999763 4 223344333322 25666654 4788999999999987776 5532 2 4566666
Q ss_pred HHHHHHhCCC-----CEEE-----EccCc--------CcCCHHHHHHHHHHHHhhCCC-CeEEEEeCCccchHHHHHHHH
Q 015894 253 VSKQLYDMGC-----SEIS-----LGDTI--------GVGTPGTVIPMLEAVLDAVPV-DKLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 253 ~a~~l~~~Ga-----d~I~-----L~DT~--------G~~~P~~v~~lv~~l~~~~p~-~~l~~H~Hnd~GlA~ANalaA 313 (398)
.+..+.+++. ..+. -.+|- ..++|.+.-.+++..|-.+|+ ..|-.-. -..|..+ +..|
T Consensus 216 ~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~--~~~~ 292 (348)
T PRK08445 216 HWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI--GQLA 292 (348)
T ss_pred HHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH--HHHH
Confidence 6655555543 2221 22331 137788888888888776675 2222222 2445544 4788
Q ss_pred HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894 314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi 355 (398)
+.+||+-+++|+..=--=+.|+...| ...|+++.+.+..|.
T Consensus 293 L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~ 333 (348)
T PRK08445 293 LLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGE 333 (348)
T ss_pred HhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCC
Confidence 99999999999864211222322333 467899988888776
No 58
>PLN02389 biotin synthase
Probab=97.95 E-value=0.0065 Score=62.29 Aligned_cols=218 Identities=12% Similarity=0.055 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC----CCCCcccCCCCHHHHHHHHHhccCCcEEEEe----CCHhhHHHHHHcCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF----VSPKWVPQLADAKDVMAAIQNVEGARFPVLT----PNLKGFEAAVAAGA 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~----~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~n~~~ie~a~~~Gv 186 (398)
.++.++.++.++.+.+.|+..|-++.. ..++ .+.+.+.+.++.+....+.+.+ .+.+.++...++|+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~-----~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGl 189 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRK-----TNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGL 189 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCCh-----hHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999999877521 1111 1245566666654432222222 25678899999999
Q ss_pred CEEEEeccCch-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCC
Q 015894 187 KEVAIFASASE-SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCS 263 (398)
Q Consensus 187 ~~v~i~~~~Sd-~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad 263 (398)
+.+.+-.-.++ .|.+..-..+ .+...+.++.|++.|+.+...+. +|. .+ +++...+.+..+.+. +++
T Consensus 190 d~~~~~LeTs~~~y~~i~~~~s----~e~rl~ti~~a~~~Gi~v~sg~I--iGl-gE---t~edrv~~l~~Lr~L~~~~~ 259 (379)
T PLN02389 190 TAYNHNLDTSREYYPNVITTRS----YDDRLETLEAVREAGISVCSGGI--IGL-GE---AEEDRVGLLHTLATLPEHPE 259 (379)
T ss_pred CEEEeeecCChHHhCCcCCCCC----HHHHHHHHHHHHHcCCeEeEEEE--ECC-CC---CHHHHHHHHHHHHhcccCCc
Confidence 99988666666 3332222334 44445677899999999876655 553 22 467777777777777 456
Q ss_pred EEEE------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC-CCCC
Q 015894 264 EISL------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL-GGCP 332 (398)
Q Consensus 264 ~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl-Gecp 332 (398)
.|.+ +.| ....+|.+..+++...|-.+|+..+.+-.-- .-+..-....|+.+||+-+=+ +++ =
T Consensus 260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~--g~~~L--- 333 (379)
T PLN02389 260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT--GDKLL--- 333 (379)
T ss_pred EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE--CCccc---
Confidence 5543 355 2347788999999999888886433221111 112223457899999985532 111 1
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCCC
Q 015894 333 YAKGASGNVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 333 ~a~graGNa~lE~vv~~L~~~Gi~t 357 (398)
-+.+.+.++=+.+++++|+..
T Consensus 334 ----tt~g~~~~~d~~~~~~lg~~~ 354 (379)
T PLN02389 334 ----TTPNNDFDADQAMFKELGLIP 354 (379)
T ss_pred ----CCCCCChHHHHHHHHHcCCCc
Confidence 233444566667788888864
No 59
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.95 E-value=0.0012 Score=67.24 Aligned_cols=219 Identities=13% Similarity=0.146 Sum_probs=139.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH---Hh-ccCCcEEEEeC-------------CH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI---QN-VEGARFPVLTP-------------NL 175 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~-------------n~ 175 (398)
...++.++.++.++.+.+.|+..+-+.+...|. ..+.+.+.+.+ ++ .+++.+.++++ ..
T Consensus 88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~ 163 (371)
T PRK07360 88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE 163 (371)
T ss_pred CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH
Confidence 346899999999999999999999998654442 22344444444 43 35666666532 23
Q ss_pred hhHHHHHHcCCCEEEEeccCchH----HHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASES----FSKS--NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK 249 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~----~~~~--~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~ 249 (398)
+.+++..++|++.+.- ...++ ..+. .-.++.++- .++++.|+++|+.+...+. +|. .+ +++.
T Consensus 164 e~l~~LkeAGld~~~~--t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i--~G~-gE---t~ed 231 (371)
T PRK07360 164 EVLKALKDAGLDSMPG--TAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMM--YGH-VE---TPEH 231 (371)
T ss_pred HHHHHHHHcCCCcCCC--cchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--eeC-CC---CHHH
Confidence 4588889999998851 11111 1110 112344333 5788999999999986666 442 12 5677
Q ss_pred HHHHHHHHHhCCCCE------EEE---------ccCcCc---CCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHH
Q 015894 250 VAYVSKQLYDMGCSE------ISL---------GDTIGV---GTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSN 309 (398)
Q Consensus 250 l~~~a~~l~~~Gad~------I~L---------~DT~G~---~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~AN 309 (398)
.++.+..+.+++.+. |-+ .+.... .+|.+..++++..|-.+|+ ..|-.-. ..+|.. .
T Consensus 232 rv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg~~--~ 308 (371)
T PRK07360 232 RIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKLGLK--L 308 (371)
T ss_pred HHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eeeCHH--H
Confidence 888788888876654 322 222211 4678888888888877886 3343333 344433 3
Q ss_pred HHHHHHhCCCEEeecccc------CCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894 310 ILASLQMGISTVDSSVSG------LGGCPYAKGASG-NVATEDVVYMLNGLGVR 356 (398)
Q Consensus 310 alaAl~aGa~~VD~Sv~G------lGecp~a~graG-Na~lE~vv~~L~~~Gi~ 356 (398)
...++.+||+.+.+++.+ .|. ... ....+++...++..|+.
T Consensus 309 ~~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~ 356 (371)
T PRK07360 309 AQVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRI 356 (371)
T ss_pred HHHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCc
Confidence 566899999999888765 222 222 25889999999988874
No 60
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.90 E-value=0.0018 Score=66.03 Aligned_cols=265 Identities=10% Similarity=0.061 Sum_probs=153.3
Q ss_pred hccccccCCCCCccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 015894 55 KQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLA 134 (398)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~ 134 (398)
++.|....|+.-.+.++.|++-.|+..+. . |+.+-........++.++.++.++.+.+.|+.
T Consensus 61 ~~ir~~~~G~~v~l~~~in~Tn~C~~~C~--------Y----------C~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~ 122 (371)
T PRK09240 61 QRLTRQRFGNTISLYTPLYLSNYCANDCT--------Y----------CGFSMSNKIKRKTLDEEEIEREMAAIKKLGFE 122 (371)
T ss_pred HHHHHHHcCCEEEEEeceEEcccccCcCC--------c----------CCCCCCCCCccccCCHHHHHHHHHHHHhCCCC
Confidence 34444445665566667777655544311 0 11211111112468999999999999999999
Q ss_pred EEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCc-hHHHhhhcC-CCH
Q 015894 135 VVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLTPNLKGFEAAVAAGAKEVAIFASAS-ESFSKSNIN-CTI 208 (398)
Q Consensus 135 ~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~S-d~~~~~~~~-~s~ 208 (398)
.|-+...-.|. ..+.+.+.+.++.+ |.+.+.+..-+.++++...++|++.+.+..-+. +.+.+ ++. ..+
T Consensus 123 ~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~-~i~~~g~ 197 (371)
T PRK09240 123 HILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYA-KHHLRGP 197 (371)
T ss_pred EEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHH-HhCcCCC
Confidence 99775433332 13456666666543 344443333467889999999999999987773 44322 231 011
Q ss_pred HHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC------CEE---EEccCcC------
Q 015894 209 EDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC------SEI---SLGDTIG------ 272 (398)
Q Consensus 209 ~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga------d~I---~L~DT~G------ 272 (398)
....+...+.++.|++.|+. |...++ +|.+. +.+...+++..+.+++. ..| .|....|
T Consensus 198 ~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~ 271 (371)
T PRK09240 198 KRDFEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPAS 271 (371)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCC
Confidence 11233344567889999996 765555 45332 34556666655554443 133 3444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH---HHHHHHHHhCCCEEeeccccCCCCCCCCCC-C--------CC
Q 015894 273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL---SNILASLQMGISTVDSSVSGLGGCPYAKGA-S--------GN 340 (398)
Q Consensus 273 ~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~---ANalaAl~aGa~~VD~Sv~GlGecp~a~gr-a--------GN 340 (398)
.++|.++.++|..+|-.+|...|-+=+--...+.- .....++.|| .-+.++|+.. . . ..
T Consensus 272 ~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag---~~~~~G~y~~------~~~~~~qf~~~~~ 342 (371)
T PRK09240 272 IVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG---SSTQPGGYAD------DHKELEQFEISDD 342 (371)
T ss_pred CCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC---ccCCCCCcCC------CCCCcCCccCCCC
Confidence 25788999999999988898666665554322221 1111223333 1233444433 1 1 25
Q ss_pred ccHHHHHHHHHhCCCCC
Q 015894 341 VATEDVVYMLNGLGVRT 357 (398)
Q Consensus 341 a~lE~vv~~L~~~Gi~t 357 (398)
-+.++.+.+++++|+++
T Consensus 343 r~~~~~~~~i~~~g~~~ 359 (371)
T PRK09240 343 RSVEEVAAALRAKGLQP 359 (371)
T ss_pred CCHHHHHHHHHHCCCee
Confidence 67899999999999865
No 61
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.87 E-value=0.0038 Score=60.02 Aligned_cols=177 Identities=19% Similarity=0.167 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCc-ccCCC-CHH--------HHHHHHHhccCCcEEEEe------CCHhh
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVS-PKW-VPQLA-DAK--------DVMAAIQNVEGARFPVLT------PNLKG 177 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~-~p~~~-D~~--------~v~~~i~~~~~~~l~~l~------~n~~~ 177 (398)
..+.++-.++++.|.+. ++.||+|.|.+ |.. .|... +.. ++++.+++..+..+..++ .+...
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~ 92 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDN 92 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHH
Confidence 35778889999999998 99999998654 321 22221 112 233344433344443332 23333
Q ss_pred -HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 178 -FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 178 -ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
++.+.++|++.|-+.+-.- |+.+...+++++++++|+++...+. | .++++.+..+++.
T Consensus 93 ~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~-----p---~T~~e~l~~~~~~ 151 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS-----P---KFPDLLIHRLSKL 151 (244)
T ss_pred HHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHHHHHh
Confidence 6778899999998853211 2234566788999999999864333 2 2456666665542
Q ss_pred HHhCCCCEE--EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhCCCEE
Q 015894 257 LYDMGCSEI--SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMGISTV 321 (398)
Q Consensus 257 l~~~Gad~I--~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aGa~~V 321 (398)
.-..+ .+.-..|.-.+..+.+.++.+|+..+..+|.+ +.|. ...++-.++++||+.+
T Consensus 152 ----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 152 ----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred ----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence 22333 23223465678889999999998876545543 5666 3456666679999854
No 62
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.86 E-value=0.0015 Score=63.82 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc---cCCcEEEEe-CCH---
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV---EGARFPVLT-PNL--- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~-~n~--- 175 (398)
-+.+.-.++++.|.+.|+|.||+|+|.+.+. .| |. ...+.+++.++++ .++.+..|+ -|.
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~ 105 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH 105 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 4678889999999999999999999876321 01 10 0122344444432 345555555 353
Q ss_pred hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
-| ++.+.++|++.+-+.+= -++...+..+.++++|+....-++ |. ++++.+.
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDL----------------P~ee~~~~~~~~~~~gi~~I~lv~-----Pt---T~~eri~ 161 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDL----------------PYEESDYLISVCNLYNIELILLIA-----PT---SSKSRIQ 161 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCC----------------CHHHHHHHHHHHHHcCCCEEEEEC-----CC---CCHHHHH
Confidence 13 56778999999888542 124456778899999998753232 32 3556666
Q ss_pred HHHHHHHhCC-CCEEEEccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894 252 YVSKQLYDMG-CSEISLGDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV 321 (398)
Q Consensus 252 ~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V 321 (398)
.+++.. -| +..+...=+.|. ..|..+.++++.+|+.. +.|+.+ .+|-. ..++.....+|||.|
T Consensus 162 ~i~~~a--~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 162 KIARAA--PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHhC--CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 665432 12 233344666666 45788999999999865 346665 56666 345566677899854
No 63
>PLN02591 tryptophan synthase
Probab=97.85 E-value=0.0029 Score=61.35 Aligned_cols=175 Identities=18% Similarity=0.225 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc---cCCcEEEEeC-CH---
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV---EGARFPVLTP-NL--- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~~-n~--- 175 (398)
-+.+.-+++++.|.+.|+|.||+|+|.+.+. .| |. ...+.+++.++++ .++.+..|+. |.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~ 92 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK 92 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence 4677889999999999999999999876321 01 11 0223444444432 3445555553 53
Q ss_pred hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
-| ++.+.++|++.+-+..= . ++...+..+.++++|+.....++ | .++.+.+.
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDL------------P----~ee~~~~~~~~~~~gl~~I~lv~-----P---tt~~~ri~ 148 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDL------------P----LEETEALRAEAAKNGIELVLLTT-----P---TTPTERMK 148 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCC------------C----HHHHHHHHHHHHHcCCeEEEEeC-----C---CCCHHHHH
Confidence 24 46778899999888532 1 25556788999999998753222 2 13455666
Q ss_pred HHHHHHHhCC-CCEEEEccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894 252 YVSKQLYDMG-CSEISLGDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV 321 (398)
Q Consensus 252 ~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V 321 (398)
.+++. .-| +..|...-+.|. ..|..+.++++.+|+. ++.|+-+ -+|.. -.++-..++.|||.|
T Consensus 149 ~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 149 AIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 65543 123 233444556666 5589999999999985 3445443 23433 346666778889854
No 64
>PRK08444 hypothetical protein; Provisional
Probab=97.85 E-value=0.0015 Score=66.27 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=142.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeCC-------------HhhHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTPN-------------LKGFE 179 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~n-------------~~~ie 179 (398)
+.++.++.++.++...+.|+..|-+-+...|.. + +....++++.++ ..|++.+.++++. .+.++
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~-~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~ 155 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY-G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE 155 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC-C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence 568999999999999999999998876555542 1 112234555555 3577888876531 23467
Q ss_pred HHHHcCCCEEEEeccCchHH-----HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 180 AAVAAGAKEVAIFASASESF-----SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 180 ~a~~~Gv~~v~i~~~~Sd~~-----~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
+..++|++.+.- ..-+++ .+--..++ .-++..++++.|+++|+++...++ ||-. + ++++.++.+
T Consensus 156 ~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~---~~~~~~~i~~~a~~~Gi~~~sg~l--~G~g-E---t~edrv~hl 224 (353)
T PRK08444 156 DMLEYGVDSMPG--GGAEIFDEEVRKKICKGKV---SSERWLEIHKYWHKKGKMSNATML--FGHI-E---NREHRIDHM 224 (353)
T ss_pred HHHHhCcccCCC--CCchhcCHHHHhhhCCCCC---CHHHHHHHHHHHHHcCCCccceeE--EecC-C---CHHHHHHHH
Confidence 888999986532 111222 11111222 234555778999999999987766 5533 2 467777766
Q ss_pred HHHHhCCCCE------EEE----ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCc-cchHHHHHHHHHHhCCC
Q 015894 255 KQLYDMGCSE------ISL----GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDT-YGQALSNILASLQMGIS 319 (398)
Q Consensus 255 ~~l~~~Gad~------I~L----~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd-~GlA~ANalaAl~aGa~ 319 (398)
..+.+...+. |-+ .+| ....+|.+...+++..|-.+|++ -|..-. .-++...+..|+.+||+
T Consensus 225 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~~~~q~~L~~Ga~ 301 (353)
T PRK08444 225 LRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTLNLALVAQEFGAN 301 (353)
T ss_pred HHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcHHHHHHHHhcCCc
Confidence 6776664432 233 444 12477888888888887666653 122222 12456778899999999
Q ss_pred EEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894 320 TVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR 356 (398)
Q Consensus 320 ~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~ 356 (398)
=+++|+..====|.|+..++ ..+.+++...+++.|..
T Consensus 302 D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~ 339 (353)
T PRK08444 302 DLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI 339 (353)
T ss_pred cCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence 99999743111222222333 56789999999988863
No 65
>PRK15108 biotin synthase; Provisional
Probab=97.84 E-value=0.017 Score=58.55 Aligned_cols=219 Identities=14% Similarity=0.091 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhcc--CCcEEE-Ee-CCHhhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNVE--GARFPV-LT-PNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~~--~~~l~~-l~-~n~~~ie~a~~~Gv~~v 189 (398)
.++.++.++.++.+.+.|+..|-++.. ..|. ..+.+.+.+.++.++ ++.+.+ +. .+.+.+++..++|++.+
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~ 150 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYY 150 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 479999999999999999999977532 2331 123444555555433 333321 11 24678899999999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCSEISL 267 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad~I~L 267 (398)
.+..-+++-+-. ++.. ...++.-.+.++.|++.|+.+...+. +|. +. ++++.++.+..+.++ ..+.|.+
T Consensus 151 n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE-t~ed~v~~~~~l~~l~~~~~~ip~ 221 (345)
T PRK15108 151 NHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIKVCSGGI--VGL---GE-TVKDRAGLLLQLANLPTPPESVPI 221 (345)
T ss_pred eeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCceeeEEE--EeC---CC-CHHHHHHHHHHHHhccCCCCEEEe
Confidence 997776654332 2211 12344555777899999998875554 553 22 567888888888888 4455432
Q ss_pred ------ccC-c---CcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEEeecccc-CCCCCCCC
Q 015894 268 ------GDT-I---GVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTVDSSVSG-LGGCPYAK 335 (398)
Q Consensus 268 ------~DT-~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~VD~Sv~G-lGecp~a~ 335 (398)
..| . ..++|.+..++|...|-.+|+..+.+=. -.+.|- -....|+.+||+.+ -+.+ +=.
T Consensus 222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~--~~~~~~l~~Gan~~--~~g~~~lt----- 292 (345)
T PRK15108 222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANSI--FYGCKLLT----- 292 (345)
T ss_pred CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh--hhHHHHHHcCCcEE--EECCcccc-----
Confidence 455 1 2367889999999998888873333211 112222 34688999999987 2222 112
Q ss_pred CCCCCccHHHHHHHHHhCCCCC
Q 015894 336 GASGNVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 336 graGNa~lE~vv~~L~~~Gi~t 357 (398)
..| .+.++.+.++++.|+.+
T Consensus 293 -t~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 293 -TPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred -CCC-CCHHHHHHHHHHcCCCc
Confidence 334 57899999999998854
No 66
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.75 E-value=0.023 Score=55.53 Aligned_cols=219 Identities=12% Similarity=0.032 Sum_probs=129.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec-CCCCCcccCCCCHHHHHHHHHh-c--cCCcEEEEe--CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMAAIQN-V--EGARFPVLT--PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-~~~~~~~p~~~D~~~v~~~i~~-~--~~~~l~~l~--~n~~~ie~a~~~Gv~~ 188 (398)
..+.++.++.++.+.+.|+..+-+.. ...+. ..+..+++..+.+ . .++++.+-. .+.+.++...++|++.
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~ 136 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDY 136 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence 35678888889989999998764422 11111 0122333333331 1 244432221 2567788899999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE--
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS-- 266 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~-- 266 (398)
+.+..-.++-..+ +++. ...++...++++.+++.|+.+.+.++ +|. .+ +.+.+.+.++.+.+.|++.+.
T Consensus 137 v~i~~E~~~~~~~-~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e---t~~d~~~~~~~l~~l~~~~i~l~ 207 (296)
T TIGR00433 137 YNHNLDTSQEFYS-NIIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE---TVEDRIGLALALANLPPESVPIN 207 (296)
T ss_pred EEEcccCCHHHHh-hccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---CHHHHHHHHHHHHhCCCCEEEee
Confidence 9886665553322 2222 12345555778889999999876665 553 22 568888888889999988663
Q ss_pred ----EccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894 267 ----LGDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS 338 (398)
Q Consensus 267 ----L~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra 338 (398)
++.| ....++.+..+++...|..+|...|-+=+=--.-+.---..-|+.+||+.+=+ +|+=- -.
T Consensus 208 ~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------~~ 279 (296)
T TIGR00433 208 FLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------TT 279 (296)
T ss_pred eeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------CC
Confidence 2243 12345578888999999888864442211111111211122478999987653 44433 57
Q ss_pred CCccHHHHHHHHHhCC
Q 015894 339 GNVATEDVVYMLNGLG 354 (398)
Q Consensus 339 GNa~lE~vv~~L~~~G 354 (398)
|+..-++=+.+++++|
T Consensus 280 g~~~~~~~~~~~~~~~ 295 (296)
T TIGR00433 280 GNPEEDKDKKLLAKLG 295 (296)
T ss_pred CCCCcHHHHHHHHHcC
Confidence 7888744445666655
No 67
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.74 E-value=0.0014 Score=60.87 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCC--HhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPN--LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n--~~~ie~a~~~Gv~~v~ 190 (398)
++.++-+++++.| +-|++.||+|...... ..-+.+..+++. ++..+.+= +.+ ...++.+.++|++.|-
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 5678889999999 8999999998432211 112345555533 44333321 123 2368899999999887
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-- 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-- 268 (398)
+...... ..+.+++++++++|+.+...+. +| .+ ..+.++.+.+.|+|.+.+.
T Consensus 82 vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~----~~----~t---~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 82 VLGVADD---------------ATIKGAVKAAKKHGKEVQVDLI----NV----KD---KVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred EeccCCH---------------HHHHHHHHHHHHcCCEEEEEec----CC----CC---hHHHHHHHHHcCCCEEEEcCC
Confidence 6543221 2345678889999998875432 11 11 2233445567899998774
Q ss_pred ---cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 269 ---DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 269 ---DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
++.+... .+.++.+++.+|..++.+= -|.-..|.-..+++|++.|-+
T Consensus 136 ~~~~~~~~~~----~~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 136 LDEQAKGQNP----FEDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred cCcccCCCCC----HHHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence 1222222 2345566665654444432 355567888889999987654
No 68
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.73 E-value=0.0053 Score=58.14 Aligned_cols=152 Identities=22% Similarity=0.309 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hcc---CCcEEEE-eCCHhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVE---GARFPVL-TPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~---~~~l~~l-~~n~~~ie~a~~~Gv~~v~ 190 (398)
-+.++-+++++.|.+.|++.+|+++- +|. ..+.++.++ +.+ +..+.+= +.+.++++.++++|++.+-
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~-~~~-------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT-NPF-------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC-Ccc-------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence 37888899999999999999999984 332 345555555 343 3444433 3688999999999999765
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--c
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--G 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~ 268 (398)
|+.+ -.+++++|++.|+.+-. +-.+++++.. +.++|+|.|.+ +
T Consensus 94 -----sP~~---------------~~~v~~~~~~~~i~~iP-----------G~~T~~E~~~----A~~~Gad~vklFPa 138 (213)
T PRK06552 94 -----SPSF---------------NRETAKICNLYQIPYLP-----------GCMTVTEIVT----ALEAGSEIVKLFPG 138 (213)
T ss_pred -----CCCC---------------CHHHHHHHHHcCCCEEC-----------CcCCHHHHHH----HHHcCCCEEEECCc
Confidence 2221 13678899999998641 3346766544 45799999988 3
Q ss_pred cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|..| |. +++.++..+|.+++-. +-|.-..|.-.-+.+|++.+
T Consensus 139 ~~~G---~~----~ik~l~~~~p~ip~~a----tGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 139 STLG---PS----FIKAIKGPLPQVNVMV----TGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred ccCC---HH----HHHHHhhhCCCCEEEE----ECCCCHHHHHHHHHCCCcEE
Confidence 4333 44 3666777778666553 45777899999999999865
No 69
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=97.72 E-value=0.004 Score=63.43 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=130.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLTPNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~n~~~ie~a~~~Gv~~v 189 (398)
..++.++..+.++.+.+.|+..|-+.....|. ..+.+.+.+.++.+ |.+.+.+..-+.++++...++|++.+
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~ 176 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGV 176 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEE
Confidence 35789999999999999999988776443332 23455566666543 33333332236788999999999999
Q ss_pred EEeccCchHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC-----
Q 015894 190 AIFASASESFSKSNIN-CTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC----- 262 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~-~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga----- 262 (398)
.+..-+.+.-...++. ..+....+...+.++.|++.|+. |...++ +|.+. + ......++..+..++.
T Consensus 177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Gl~e-~---~~d~~~~a~~l~~L~~~~~~~ 250 (366)
T TIGR02351 177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGAL--LGLDD-W---RTDAFFTAYHLRYLQKKYWKT 250 (366)
T ss_pred EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEE--EeCch-h---HHHHHHHHHHHHHHHHHcCCC
Confidence 9987765322222332 11112233344667899999997 665444 55442 2 2333333333333222
Q ss_pred -CEE---EEcc------CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe----eccccC
Q 015894 263 -SEI---SLGD------TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD----SSVSGL 328 (398)
Q Consensus 263 -d~I---~L~D------T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD----~Sv~Gl 328 (398)
..| .|.. ....++|.++.+++..+|-.+|...|-+=+--..-+. .. .+..|+..+. +.++|+
T Consensus 251 ~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr--d~--~~~~~~~~~~a~~~~~~G~y 326 (366)
T TIGR02351 251 EISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR--DN--VIPLGITKMSAGSSTEPGGY 326 (366)
T ss_pred CccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH--HH--HHhhcceeeccCcccCCCCc
Confidence 222 2332 2345678999999999998889766666554432221 11 1123332221 123333
Q ss_pred CCCCCCCCCCC---------CccHHHHHHHHHhCCCCC
Q 015894 329 GGCPYAKGASG---------NVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 329 Gecp~a~graG---------Na~lE~vv~~L~~~Gi~t 357 (398)
-. ..| +-++++++.+++..|+.+
T Consensus 327 ~~------~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~ 358 (366)
T TIGR02351 327 SS------EKKGLEQFEISDERSVAEVEEDLRSKGLQP 358 (366)
T ss_pred CC------CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence 32 233 378899999999999865
No 70
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.67 E-value=0.014 Score=61.36 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=138.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC-------C-cEEE-Ee-CCHhhHHHHHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG-------A-RFPV-LT-PNLKGFEAAVA 183 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~-------~-~l~~-l~-~n~~~ie~a~~ 183 (398)
..++.++.++-++.+.+.|+..+-+-+.-.|.. .+.+.+.+.++.+.. . ++.+ +. .+.++++...+
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~----~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke 188 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPN----CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE 188 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH
Confidence 468999999999999999999888855444321 245555555553321 1 2222 12 36789999999
Q ss_pred cCCCEEEEeccCchHHHhhhc--C---CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 184 AGAKEVAIFASASESFSKSNI--N---CTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~--~---~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+|++.+.++--+.+.-....+ + .+.++- .++++.|++.|+. |...+. ||.++ ++.+.-.++.-++.+
T Consensus 189 aGv~~~~l~qETY~~ety~~~hp~g~k~~y~~R----l~t~~rA~~aGi~~Vg~G~L--~GLge-~~~E~~~l~~hl~~L 261 (469)
T PRK09613 189 AGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWR----LTAMDRAMEAGIDDVGIGVL--FGLYD-YKFEVLGLLMHAEHL 261 (469)
T ss_pred cCCCEEEeccccCCHHHHHhcCCCCCCCCHHHH----HHHHHHHHHcCCCeeCeEEE--EcCCC-CHHHHHHHHHHHHHH
Confidence 999999988766322112222 1 233333 3567889999997 764444 66543 232222222222223
Q ss_pred H---hCCCCEEEEc------cC-c----CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 258 Y---DMGCSEISLG------DT-I----GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 258 ~---~~Gad~I~L~------DT-~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
. ..|++.|.++ +| . -..++.++..+|..+|-.+|...|-+=++....+= -..+..|+..+++
T Consensus 262 ~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r----~~~~~~gvt~~sa 337 (469)
T PRK09613 262 EERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR----REVLELGVSQISA 337 (469)
T ss_pred HHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH----HHHHhhcceeecc
Confidence 2 2256766644 44 2 23677899999999999899777888777774422 2345679988853
Q ss_pred -ccccCCCCCCCCC----------CCCCccHHHHHHHHHhCCCC
Q 015894 324 -SVSGLGGCPYAKG----------ASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 324 -Sv~GlGecp~a~g----------raGNa~lE~vv~~L~~~Gi~ 356 (398)
|-.|.|+ |+.. -+=+-++++|+..|.+.|+.
T Consensus 338 gs~t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~ 379 (469)
T PRK09613 338 GSRTGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYI 379 (469)
T ss_pred cccCCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCe
Confidence 2235555 2211 12356788999988877764
No 71
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.64 E-value=0.0043 Score=58.73 Aligned_cols=148 Identities=25% Similarity=0.261 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
.+.++-+++++.|.+.|++.||+++ ..|. ..+.++.++ +.|+..+.+ -+.+..+++.++++|++.+-...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~~-------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL-RTPA-------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CCcc-------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence 5788899999999999999999994 3332 334555555 567655543 33578899999999999775422
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~ 273 (398)
.+ .+++++|++.|+..-. +-.+|.+ +.++.++|++.+.+-+
T Consensus 96 -~~-------------------~~vi~~a~~~~i~~iP-----------G~~TptE----i~~a~~~Ga~~vKlFP---- 136 (212)
T PRK05718 96 -LT-------------------PPLLKAAQEGPIPLIP-----------GVSTPSE----LMLGMELGLRTFKFFP---- 136 (212)
T ss_pred -CC-------------------HHHHHHHHHcCCCEeC-----------CCCCHHH----HHHHHHCCCCEEEEcc----
Confidence 11 2567888999987641 2345655 4457789999999944
Q ss_pred CCHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 274 GTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 274 ~~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
.+. ..+++.++.-+|.+++- -+=|....|.-.=+.+|
T Consensus 137 ---a~~~gg~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag 176 (212)
T PRK05718 137 ---AEASGGVKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP 176 (212)
T ss_pred ---chhccCHHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence 332 35677788778876555 35577778888888889
No 72
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.54 E-value=0.013 Score=55.18 Aligned_cols=152 Identities=26% Similarity=0.344 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
.+.++-+++++.|.+.|++.||+++-. | +..+.++.++ +.|++.+.+=+ .+.++++.++++|++.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi---- 84 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI---- 84 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence 478888999999999999999999832 3 2344555555 45665554433 58899999999999987
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~ 273 (398)
+|+.+. .+++++|+++|+.+-. +-.+|.++. .+.++|++.|-+
T Consensus 85 -vsP~~~---------------~~v~~~~~~~~i~~iP-----------G~~TptEi~----~A~~~Ga~~vKl------ 127 (204)
T TIGR01182 85 -VSPGLT---------------PELAKHAQDHGIPIIP-----------GVATPSEIM----LALELGITALKL------ 127 (204)
T ss_pred -ECCCCC---------------HHHHHHHHHcCCcEEC-----------CCCCHHHHH----HHHHCCCCEEEE------
Confidence 233210 3678899999997642 335676644 456799998765
Q ss_pred CCHHH-H--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 274 GTPGT-V--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 274 ~~P~~-v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
.|.. + ..+++.++.-+|++++- -+-|....|.-.=+.+|+..+
T Consensus 128 -FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 -FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred -CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 3333 2 25788888878876554 456777789999999998754
No 73
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.45 E-value=0.018 Score=58.28 Aligned_cols=208 Identities=15% Similarity=0.153 Sum_probs=135.9
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhh
Q 015894 107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKG 177 (398)
Q Consensus 107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~ 177 (398)
++.+..+ +.+..+....++++-.+.+-+.|=-.++..-++.+ .+.+...++. .+.+.+.... .+.+.
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~ 90 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMHQDHGNSPAT 90 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 3444443 35788888999999999999987665543322221 2223333332 2224444433 35678
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------C---------
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------V--------- 241 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~--------- 241 (398)
+.+++++|...|.+=.| ... ..|...+.++.++.-++++++|+..|+.|++.|-..-|.+ +
T Consensus 91 i~~ai~~GftSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~ 167 (347)
T PRK09196 91 CQRAIQLGFTSVMMDGS--LKA-DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLS 167 (347)
T ss_pred HHHHHHcCCCEEEecCC--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccc
Confidence 89999999998887333 110 1234457889999999999999999999998887643322 1
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCEE--EEccCcCcC----CHH---HHHHHHHHHHhhCCCCeEEEEeCCcc-------
Q 015894 242 --EGMVPPSKVAYVSKQLYDMGCSEI--SLGDTIGVG----TPG---TVIPMLEAVLDAVPVDKLAVHFHDTY------- 303 (398)
Q Consensus 242 --~~r~~~~~l~~~a~~l~~~Gad~I--~L~DT~G~~----~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd~------- 303 (398)
..-++|+...++++ +.|+|.+ .+.-.=|.- .|. ==.++++.+++.+|++||.+|+=...
T Consensus 168 ~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~ 244 (347)
T PRK09196 168 HDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDI 244 (347)
T ss_pred hhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHH
Confidence 11467777666554 5788854 333344443 242 12346788888887789999987755
Q ss_pred ------------chHHHHHHHHHHhCCCEEeec
Q 015894 304 ------------GQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 304 ------------GlA~ANalaAl~aGa~~VD~S 324 (398)
|........|++.|+.-|+..
T Consensus 245 ~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~ 277 (347)
T PRK09196 245 INEYGGDMPETYGVPVEEIQEGIKHGVRKVNID 277 (347)
T ss_pred HHHhcCCccccCCCCHHHHHHHHHCCCceEEeC
Confidence 778899999999999877543
No 74
>PRK05927 hypothetical protein; Provisional
Probab=97.41 E-value=0.011 Score=59.90 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=134.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHH---HHHHh-ccCCcEEEEeC-------------CHh
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM---AAIQN-VEGARFPVLTP-------------NLK 176 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~---~~i~~-~~~~~l~~l~~-------------n~~ 176 (398)
..++.++.++.++...+.|+..+-+.+...|+ .+.+.+. +.+++ .|++.+-++.+ ..+
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e 148 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQ 148 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHH
Confidence 47899999999999999999998887665554 2344444 44442 35554433321 234
Q ss_pred hHHHHHHcCCCEEE---EeccCchHHHhhhcCCCHHH-HHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVA---IFASASESFSKSNINCTIED-SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~---i~~~~Sd~~~~~~~~~s~~~-~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
.+++..++|++.+. .-++.+. +.+ . +++.+ ..+.=.++++.|+++|+++...++ ||- .+ +++..++
T Consensus 149 ~l~~Lk~aGl~~l~g~~~Et~~~~-~~~-~--~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l--~G~-gE---t~e~ri~ 218 (350)
T PRK05927 149 ALERLWDAGQRTIPGGGAEILSER-VRK-I--ISPKKMGPDGWIQFHKLAHRLGFRSTATMM--FGH-VE---SPEDILL 218 (350)
T ss_pred HHHHHHHcCcccCCCCCchhCCHH-Hhh-c--cCCCCCCHHHHHHHHHHHHHcCCCcCceeE--Eee-CC---CHHHHHH
Confidence 57788899997554 2222222 211 1 12212 122334778999999999987777 442 12 4566666
Q ss_pred HHHHHHhCCCC--EEE--Ec------cCc---C---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 253 VSKQLYDMGCS--EIS--LG------DTI---G---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 253 ~a~~l~~~Gad--~I~--L~------DT~---G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
.+..+.+.+-+ .|. |+ +|- . ..+|.+...+++..|-.+|++++ +-. --..++.-.+..|+.+
T Consensus 219 ~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~-i~~-~w~~~G~~~~q~~L~~ 296 (350)
T PRK05927 219 HLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH-IAA-SWFGEGKEEGAKGLHY 296 (350)
T ss_pred HHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-ccC-CccccCHHHHHHHHhC
Confidence 55555554311 111 33 443 1 47888888888888887886431 111 1223455667789999
Q ss_pred CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
||+-+++++..====|-|++..+ ...+++...++..|..
T Consensus 297 GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~ 335 (350)
T PRK05927 297 GADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI 335 (350)
T ss_pred CCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence 99999988743111122232333 3688888888877764
No 75
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.41 E-value=0.016 Score=53.42 Aligned_cols=165 Identities=20% Similarity=0.157 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe--CC--HhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT--PN--LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~--~n--~~~ie~a~~~Gv~~v~ 190 (398)
.+.++-.++++.|.+. ++.||+|.+... ....+.++.+++ .++..+.+.. .+ ...++.+.++|++.+.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 5778889999999999 999999854311 111244555554 3565554421 22 2346888999999888
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c-
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-G- 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-~- 268 (398)
+.....+ +.+.+++++++++|+.+.+.+. +..+++.... +...|+|.+.+ .
T Consensus 83 ~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e~~~----~~~~~~d~v~~~~~ 135 (202)
T cd04726 83 VLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDPEKRAK----LLKLGVDIVILHRG 135 (202)
T ss_pred EEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCHHHHHH----HHHCCCCEEEEcCc
Confidence 7654321 2345678889999987753222 1234555443 55679998777 2
Q ss_pred ---cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 269 ---DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 269 ---DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.+.| +....+.++.+++. ++.++.+=+ |-...|...++++||+.+=
T Consensus 136 ~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 136 IDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVI 184 (202)
T ss_pred ccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEE
Confidence 2332 22334555555543 344565544 5556789999999999653
No 76
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.40 E-value=0.029 Score=55.62 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=129.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---c--CCcEEEEeC--CHhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---E--GARFPVLTP--NLKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~--~~~l~~l~~--n~~~ie~a~~~Gv~ 187 (398)
.++.+....++++-.+.+-+.|=-.+...-++.+ ..+.+...++.. - ++.+..... +.+.++.|++.|++
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~---~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~Gft 101 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMG---GYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYT 101 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence 4678888889999999999987766543322211 122223333321 2 233333322 45678899999999
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----CC-CCHHHHHHHHHHHHhCCC
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----GM-VPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~r-~~~~~l~~~a~~l~~~Ga 262 (398)
.|.+=.+ ..+.+|.++..++++++|+..|..|.+.+-...|.++. +. ++|+...++. +.|+
T Consensus 102 SVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgv 167 (293)
T PRK07315 102 SIMFDGS----------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGI 167 (293)
T ss_pred EEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCC
Confidence 9887433 24678999999999999999999998777665443442 22 6787765544 5799
Q ss_pred CEEEEc--cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 263 SEISLG--DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 263 d~I~L~--DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
|.|.++ -.=|.. +|.-=.++++.+++..+++||.+|+-. |....|...+++.|++-|+..-
T Consensus 168 D~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 168 DFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred CEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEEcc
Confidence 987776 332222 232334568888888766789888864 7888999999999999776543
No 77
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.40 E-value=0.026 Score=56.58 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c----CCcEEEEe---CCHhhHHHHHHcCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E----GARFPVLT---PNLKGFEAAVAAGA 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~----~~~l~~l~---~n~~~ie~a~~~Gv 186 (398)
.+..+....++++-.+.+-+.|=-.++..-++.+. .-.+.+...++.. . .+.+.... .+.+.+.+|+++|.
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gf 109 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGF 109 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 46788888899999999999876655432222210 0012223332321 1 23333332 35778999999999
Q ss_pred CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 015894 187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G--MVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~--r~~~~~l~~~a~~l~~~ 260 (398)
..|.+=.| ..+.++.++.-++++++|+..|+.|++.|-..-|.++. . -++|+...++++ +.
T Consensus 110 tSVMiD~S----------~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~T 176 (321)
T PRK07084 110 SSVMIDGS----------HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KT 176 (321)
T ss_pred CEEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---Hh
Confidence 98887433 23578999999999999999999999888876554443 1 467877777665 46
Q ss_pred CCCEE--EEccCcCcC-------CHHHHHHHHHHHHhhCCCCeEEEEeCC-------------------ccchHHHHHHH
Q 015894 261 GCSEI--SLGDTIGVG-------TPGTVIPMLEAVLDAVPVDKLAVHFHD-------------------TYGQALSNILA 312 (398)
Q Consensus 261 Gad~I--~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~l~~H~Hn-------------------d~GlA~ANala 312 (398)
|+|.+ .+.-.=|.- .|.==.++++.+++.++++||.+|+=. +.|..-.....
T Consensus 177 gvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~k 256 (321)
T PRK07084 177 GVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRK 256 (321)
T ss_pred CCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHH
Confidence 88864 333344443 243344678888888876899999877 34888999999
Q ss_pred HHHhCCCEEee
Q 015894 313 SLQMGISTVDS 323 (398)
Q Consensus 313 Al~aGa~~VD~ 323 (398)
|++.|+.-|+.
T Consensus 257 ai~~GI~KINi 267 (321)
T PRK07084 257 AAKSAVCKINI 267 (321)
T ss_pred HHHcCCceecc
Confidence 99999987654
No 78
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.37 E-value=0.0069 Score=56.65 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
.+.++-+++++.|.+.|++.||+++-. | +..+.++.++ +.|+..+.+=+ .+.++++.|+++|++.+--
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-- 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-- 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE--
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC--
Confidence 456778999999999999999999843 2 3445666555 56887665543 6899999999999996642
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ccCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--GDTI 271 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~DT~ 271 (398)
+.+ -.+++++|+++|+.+-.-. .+|.++. .+.++|++.+-+ ++..
T Consensus 87 ---P~~---------------~~~v~~~~~~~~i~~iPG~-----------~TptEi~----~A~~~G~~~vK~FPA~~~ 133 (196)
T PF01081_consen 87 ---PGF---------------DPEVIEYAREYGIPYIPGV-----------MTPTEIM----QALEAGADIVKLFPAGAL 133 (196)
T ss_dssp ---SS-----------------HHHHHHHHHHTSEEEEEE-----------SSHHHHH----HHHHTT-SEEEETTTTTT
T ss_pred ---CCC---------------CHHHHHHHHHcCCcccCCc-----------CCHHHHH----HHHHCCCCEEEEecchhc
Confidence 211 1367899999999875322 3565544 355799998765 3333
Q ss_pred CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|. ..+++.++.-+|++++- -+-|....|.-.-+++|+..+
T Consensus 134 GG------~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 134 GG------PSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TH------HHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred Cc------HHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence 31 46788888878876554 345666678888889997643
No 79
>PRK08508 biotin synthase; Provisional
Probab=97.35 E-value=0.13 Score=50.43 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEe-cCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEE-e-CCHhhHHHHHHcCCCE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEAT-SFVSPKWVPQLADAKDVMAAIQN----VEGARFPVL-T-PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG-~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l-~-~n~~~ie~a~~~Gv~~ 188 (398)
++.++.++.++...+.|+..+-+. +..... . .+.+.+.+.++. .|++.+.+. . .+.+.++...++|++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~---~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~ 115 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD---D-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFS 115 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC---c-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence 689999999999999999887652 211110 0 134444444442 245544322 2 2567888999999999
Q ss_pred EEEeccCchHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 189 VAIFASASESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
+.+-+-+++.+.+... +.++++. .+.++.|++.|+++...++ +|. + =++++..+.+..+.+.+.+.|-+
T Consensus 116 ~~~~lEt~~~~~~~i~~~~~~~~~----l~~i~~a~~~Gi~v~sg~I--~Gl---G-Et~ed~~~~l~~lr~L~~~svpl 185 (279)
T PRK08508 116 YNHNLETSKEFFPKICTTHTWEER----FQTCENAKEAGLGLCSGGI--FGL---G-ESWEDRISFLKSLASLSPHSTPI 185 (279)
T ss_pred EcccccchHHHhcCCCCCCCHHHH----HHHHHHHHHcCCeecceeE--Eec---C-CCHHHHHHHHHHHHcCCCCEEee
Confidence 9886666664432221 2344444 4566778999998876666 442 1 25788999999999999885422
Q ss_pred ------ccCc---CcCCHHHHHHHHHHHHhhCCCCeEEEEeC--CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 268 ------GDTI---GVGTPGTVIPMLEAVLDAVPVDKLAVHFH--DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 268 ------~DT~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~H--nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
.+|- ...+|.++..+++..|-.+|+..|-+=+= ..+| ..-..++.+||+.+ -+.++=
T Consensus 186 ~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~n~~--~~g~~l------- 253 (279)
T PRK08508 186 NFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGANAI--VIGDYL------- 253 (279)
T ss_pred CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCCcce--eecCcc-------
Confidence 2221 23678888899988888888755554331 1111 12356788998752 122221
Q ss_pred CCCCccHHHHHHHHHhCCCC
Q 015894 337 ASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~Gi~ 356 (398)
-+.+.+.++=+.+++++|+.
T Consensus 254 t~~g~~~~~d~~~~~~~~~~ 273 (279)
T PRK08508 254 TTKGEAPKKDIEKLKSLGFE 273 (279)
T ss_pred cCCCCChHHHHHHHHHcCCC
Confidence 23334556666688888875
No 80
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.35 E-value=0.0093 Score=57.34 Aligned_cols=171 Identities=17% Similarity=0.212 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----ccCCC--------CHHHHHHHHHhc---cCCcEEEEeC-CH----
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKW-----VPQLA--------DAKDVMAAIQNV---EGARFPVLTP-NL---- 175 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~-----~p~~~--------D~~~v~~~i~~~---~~~~l~~l~~-n~---- 175 (398)
+.+.-.++++.|.++|++.||+|+|.+... ++... ..+..++.++.+ .++.+..|+. |.
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 557778999999999999999998765311 11000 011223333322 2445555554 53
Q ss_pred --h-hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 176 --K-GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 176 --~-~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
+ =++.+.++|++.+-+.+ .+ .+...+.++.+|++|+.....+. |. ++.+.+..
T Consensus 92 G~~~fi~~~~~aG~~giiipD----l~------------~ee~~~~~~~~~~~g~~~i~~i~-----P~---T~~~~i~~ 147 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD----LP------------PEEAEEFREAAKEYGLDLIFLVA-----PT---TPDERIKK 147 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC----CC------------HHHHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHH
Confidence 2 25778899999888742 11 23566788999999998763332 21 34555555
Q ss_pred HHHHHHhCCCCEE---EEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH-HHHHHHHhCCCEE
Q 015894 253 VSKQLYDMGCSEI---SLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS-NILASLQMGISTV 321 (398)
Q Consensus 253 ~a~~l~~~Gad~I---~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A-NalaAl~aGa~~V 321 (398)
+++ ...+.| .+.-+.|.-+ +..+.+.++.+|+. .+.+|.+ +.|.-.. ++-..+++ |+.+
T Consensus 148 i~~----~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 148 IAE----LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HHh----hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 443 233333 4455666543 57788999999985 3456665 4555544 56666666 7643
No 81
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.35 E-value=0.02 Score=55.80 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc----cCCcEEEEeC-CH--
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV----EGARFPVLTP-NL-- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~~-n~-- 175 (398)
-+.+.-++++..|.+.|++.||+|+|.+.+. .| |. ...+.+++.++++ +++.+..|+. |.
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~ 102 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIF 102 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHh
Confidence 4677889999999999999999999876321 01 10 0223445555432 3556655553 52
Q ss_pred -hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 176 -KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 176 -~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
-| ++.+.++|++.+.+..= . ++.+.+.++.++++|+....-+ .| .++.+.+
T Consensus 103 ~~G~e~f~~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I~lv-----ap---~t~~eri 158 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLIFLV-----AP---TTTDERL 158 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEEEEe-----CC---CCCHHHH
Confidence 13 56788999999988421 1 3566788899999999875212 12 1345555
Q ss_pred HHHHHHHHhCCCCEEEE---ccCcCc--CCHHHHHHHHHHHHhhC
Q 015894 251 AYVSKQLYDMGCSEISL---GDTIGV--GTPGTVIPMLEAVLDAV 290 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L---~DT~G~--~~P~~v~~lv~~l~~~~ 290 (398)
..+++ ....-||+ .=+.|. ..|..+.++++.+++..
T Consensus 159 ~~i~~----~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 199 (258)
T PRK13111 159 KKIAS----HASGFVYYVSRAGVTGARSADAADLAELVARLKAHT 199 (258)
T ss_pred HHHHH----hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence 55543 33334554 334444 55778999999999865
No 82
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.30 E-value=0.042 Score=51.65 Aligned_cols=150 Identities=26% Similarity=0.300 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
.+.++-+++++.|.+.|++.||+++- .|. ..+.++.++ +.+++.+.+=+ .+.++++.++++|++.+--
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp~-------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-- 82 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR-TPA-------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-- 82 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Ccc-------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC--
Confidence 47888899999999999999999984 232 334555554 45665555433 5889999999999996542
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~ 273 (398)
+.+ -.+++++|+++|+.+-. +-.+|.++.. +.++|++.|-+
T Consensus 83 ---P~~---------------~~~vi~~a~~~~i~~iP-----------G~~TptEi~~----A~~~Ga~~vK~------ 123 (201)
T PRK06015 83 ---PGT---------------TQELLAAANDSDVPLLP-----------GAATPSEVMA----LREEGYTVLKF------ 123 (201)
T ss_pred ---CCC---------------CHHHHHHHHHcCCCEeC-----------CCCCHHHHHH----HHHCCCCEEEE------
Confidence 211 03678899999997642 3456766444 56799998766
Q ss_pred CCHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894 274 GTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319 (398)
Q Consensus 274 ~~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~ 319 (398)
.|..+ ..+++.++.-+|++++- -+-|....|.-.=+++|+.
T Consensus 124 -FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 124 -FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred -CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence 34322 36788888888876554 4557777898888899864
No 83
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=97.29 E-value=0.036 Score=53.74 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=121.3
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCC---CCHHHHHHHHHhccCCcEEEEeC--------C-----------HhhHH
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQL---ADAKDVMAAIQNVEGARFPVLTP--------N-----------LKGFE 179 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~---~D~~~v~~~i~~~~~~~l~~l~~--------n-----------~~~ie 179 (398)
.+.++.+.++|++.||+.......+.... .+..++.+.+.+..+..+++..+ + .+-++
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 44667778999999999753322221111 12233344443333455555432 1 01245
Q ss_pred HHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894 180 AAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 180 ~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~ 259 (398)
.|.+.|++.+.+.....+. .......+...+.+++++++|++.|+.+. +....+.....-.+++.+.++++.+-
T Consensus 93 ~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~- 166 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIK- 166 (279)
T ss_pred HHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcC-
Confidence 6777899988775543220 00011234566778888888889998765 33221111111245666666665442
Q ss_pred CCCCEE-EEccCc-----CcC--CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 260 MGCSEI-SLGDTI-----GVG--TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 260 ~Gad~I-~L~DT~-----G~~--~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+-+.+ .+-|+. |.- +|++..+.++.+.+.++ +-..++|.||..+.-. + +.
T Consensus 167 -~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~-----------~~ 225 (279)
T cd00019 167 -EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S-----------GK 225 (279)
T ss_pred -CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C-----------CC
Confidence 02222 223332 221 35567778887777664 2348999999765310 0 01
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCC-CCcc---------ChHHHHHHHHHHHH
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLGV-RTNV---------DIRKLMIAGDFICK 373 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~Gi-~t~i---------Dl~~L~~~~~~v~~ 373 (398)
+=+.+-+.|..+...++..|++.|+ +-.+ +...+.+..+++++
T Consensus 226 ~~~~~~G~G~id~~~~l~~L~~~~y~~g~~~lE~~~~~~~~~~~~~~~~~~~~ 278 (279)
T cd00019 226 DRHEPIGEGDIDGEELFKELKKDPYQNIPLILETPSENRDAAKIKKEIKLLRK 278 (279)
T ss_pred ccccCCCCCCcCCHHHHHHHHhCcccCCCEEEeCCCCCccchhHHHHHHHHhc
Confidence 1112224788999999999998876 4222 23466666666543
No 84
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.29 E-value=0.022 Score=53.92 Aligned_cols=181 Identities=19% Similarity=0.185 Sum_probs=114.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAV 182 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~ 182 (398)
+...+.++..++++.-.+.|+..+-+ +|.|+| ...+.++ -.++++.+.+ | . ...++.|+
T Consensus 12 ~p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 12 KADTTEEDIITLCAQAKTYKFAAVCV----NPSYVP------LAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHH------HHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 34678899999999999999988777 343332 1222222 1246665554 3 1 23678899
Q ss_pred HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
+.|++.|.+.+...... .-..+...+.+..+++.+. |..+-+-+. . +..+.+.+...++.+.++|+
T Consensus 81 ~~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE--~-----~~L~~~ei~~a~~ia~eaGA 146 (211)
T TIGR00126 81 KYGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIE--T-----GLLTDEEIRKACEICIDAGA 146 (211)
T ss_pred HcCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCC
Confidence 99999999987754321 2245667777777777764 666654232 1 23566788899999999999
Q ss_pred CEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 263 SEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 263 d~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
|.|--.- +.+..+|.++..+-+.+....|. ... =+-.|+ ..+++-+++|++++-+|
T Consensus 147 DfvKTsTGf~~~gat~~dv~~m~~~v~~~v~I-Kaa-GGirt~----~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 147 DFVKTSTGFGAGGATVEDVRLMRNTVGDTIGV-KAS-GGVRTA----EDAIAMIEAGASRIGAS 204 (211)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHhccCCeE-EEe-CCCCCH----HHHHHHHHHhhHHhCcc
Confidence 9876542 23556788888777666543321 111 112233 55666677899887665
No 85
>PRK05926 hypothetical protein; Provisional
Probab=97.26 E-value=0.022 Score=58.26 Aligned_cols=225 Identities=15% Similarity=0.125 Sum_probs=133.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC------------C-HhhH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP------------N-LKGF 178 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~------------n-~~~i 178 (398)
...++.++.++.++.. +.|+..|-+-....|.. .+....++++.++ ..|++.+.++.. . .+.+
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 3568899999999988 79999887765444431 1112234455555 357777766642 1 2347
Q ss_pred HHHHHcCCCEEEEe--ccCchHHHh-hh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIF--ASASESFSK-SN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 179 e~a~~~Gv~~v~i~--~~~Sd~~~~-~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
++..++|++.+.-- =..+|...+ .. -.++.+ .-.++++.|++.|+++...+. +| +.+ +++..++.+
T Consensus 173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~----e~l~~i~~a~~~Gi~~~sgmi--~G-~gE---t~edrv~~l 242 (370)
T PRK05926 173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ----GFLEIHKTAHSLGIPSNATML--CY-HRE---TPEDIVTHM 242 (370)
T ss_pred HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCcccCceE--Ee-CCC---CHHHHHHHH
Confidence 88899999876631 111222211 11 123333 335778999999999987644 43 222 577888888
Q ss_pred HHHHhCCCCEE-----EE-----ccCc-C-------cCCHHHHHHHHHHHH---hhCCCCeEEEEeCCccchHHHHHHHH
Q 015894 255 KQLYDMGCSEI-----SL-----GDTI-G-------VGTPGTVIPMLEAVL---DAVPVDKLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 255 ~~l~~~Gad~I-----~L-----~DT~-G-------~~~P~~v~~lv~~l~---~~~p~~~l~~H~Hnd~GlA~ANalaA 313 (398)
..+.+.+.+.+ .. .+|- | ..++.....+++..| .++|.+...| +..| ..-+..|
T Consensus 243 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~G--~~~~q~~ 317 (370)
T PRK05926 243 SKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYLG--IEVALHL 317 (370)
T ss_pred HHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhcC--HHHHHHH
Confidence 88888765432 21 2332 1 244555444444444 3445555555 3344 4567889
Q ss_pred HHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCC
Q 015894 314 LQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGV 355 (398)
Q Consensus 314 l~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi 355 (398)
+.+||+-+++|+..=--=..|+...+ -.+.+++....+..|.
T Consensus 318 L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~ 360 (370)
T PRK05926 318 LSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGR 360 (370)
T ss_pred HhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCC
Confidence 99999999999975321122222233 3456788777777775
No 86
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.21 E-value=0.036 Score=54.03 Aligned_cols=174 Identities=18% Similarity=0.230 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHH----hccCCcEEEEeC-CH-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQ----NVEGARFPVLTP-NL- 175 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~----~~~~~~l~~l~~-n~- 175 (398)
.-+.+.-+++++.|.+.|+|.||+|+|.+.+. .|.. .+.+.+++.++ +.+++.+..|+. |.
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i 99 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPI 99 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHH
Confidence 45678889999999999999999999876321 0100 12334444443 345677777774 42
Q ss_pred --hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894 176 --KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK 249 (398)
Q Consensus 176 --~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~ 249 (398)
.| ++.+.++|++.+-+.+-.- +...+..+.++++|+....-++ | .++++.
T Consensus 100 ~~~G~e~F~~~~~~aGvdGlIipDLP~----------------ee~~~~~~~~~~~gl~~I~lv~-----p---~t~~~R 155 (259)
T PF00290_consen 100 FQYGIERFFKEAKEAGVDGLIIPDLPP----------------EESEELREAAKKHGLDLIPLVA-----P---TTPEER 155 (259)
T ss_dssp HHH-HHHHHHHHHHHTEEEEEETTSBG----------------GGHHHHHHHHHHTT-EEEEEEE-----T---TS-HHH
T ss_pred hccchHHHHHHHHHcCCCEEEEcCCCh----------------HHHHHHHHHHHHcCCeEEEEEC-----C---CCCHHH
Confidence 24 3567789999988864321 1223556778899998653232 2 245666
Q ss_pred HHHHHHHHHhCCCCEEEE---ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 250 VAYVSKQLYDMGCSEISL---GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I~L---~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+..+++. .-.-||+ .-++|.- .|.++.++++.+|+.. +.|+.+= +|.....-...+..|+|.|
T Consensus 156 i~~i~~~----a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 156 IKKIAKQ----ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp HHHHHHH-----SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEE
T ss_pred HHHHHHh----CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEE
Confidence 6665543 2334555 4455554 4788999999999876 3455442 3444455556666788754
No 87
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.20 E-value=0.098 Score=47.23 Aligned_cols=171 Identities=20% Similarity=0.188 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccC--CcEEEEe--CC----H----hhHHHHHH
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEG--ARFPVLT--PN----L----KGFEAAVA 183 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~--~~l~~l~--~n----~----~~ie~a~~ 183 (398)
+.+.-.++++.|.+.|++.|++.. ++++.+. ..++ ..+.+-+ .+ . +.++.+.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 677888999999999999999974 2333333 3333 4333322 22 2 34678889
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
.|++.+-+..+. +.. ...+.++.++.++++++.+ +.++.+..+.. |... .+++.+.++++.+.+.|++
T Consensus 77 ~Gad~i~v~~~~---~~~--~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 77 LGADEIDVVINI---GSL--KEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGAD 144 (201)
T ss_pred cCCCEEEEeccH---HHH--hCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCC
Confidence 999998886442 111 1112456666666666666 56888876555 2222 3788888888888888988
Q ss_pred EEEEccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 264 EISLGDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 264 ~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
.| +++.|.. ....+..+.+.+.. ..++.+-+-.+ ...+...++.+|++.+
T Consensus 145 ~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 145 FI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred EE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 65 5666643 55555555444321 23444444322 3567778888898865
No 88
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.20 E-value=0.047 Score=54.63 Aligned_cols=229 Identities=10% Similarity=0.024 Sum_probs=128.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--------c--CCC-CHHHHHHHHHhcc---CCcEEEEe---CCH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--------P--QLA-DAKDVMAAIQNVE---GARFPVLT---PNL 175 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--------p--~~~-D~~~v~~~i~~~~---~~~l~~l~---~n~ 175 (398)
...++.++.++.++.+.+.|+..+-+.+...|... . .+. ..+.+.+.++.+. +. +..+. .+.
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~lt~ 110 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGVMSR 110 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCCCCH
Confidence 34689999999999999999999888765554321 0 000 0122223333221 22 11222 256
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
+.++...++|++ +++..-+.+.......+. ++.+..+.-.++++.|++.|+.+..+++ +|. .+ +++..++.
T Consensus 111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i--~G~-gE---t~ed~~~~ 183 (322)
T TIGR03550 111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGIL--IGI-GE---TREERAES 183 (322)
T ss_pred HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceee--EeC-CC---CHHHHHHH
Confidence 678888888875 344322221111111111 1111122335888999999999887776 552 23 45666665
Q ss_pred HHHHHhCC-----CCEEEE------ccCc----CcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 254 SKQLYDMG-----CSEISL------GDTI----GVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 254 a~~l~~~G-----ad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
+..+.+.+ ++.+.+ +.|- ...++.+...+++..|=.+| ...|-.-. .+|-- ....|+.+|
T Consensus 184 l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~--~l~~~--~~~~~L~~G 259 (322)
T TIGR03550 184 LLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP--NLNRE--DYRLLLDAG 259 (322)
T ss_pred HHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--ccChH--HHHHHHhcC
Confidence 55554433 543321 2442 24567788888888877775 32222222 33311 367789999
Q ss_pred CCEEeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q 015894 318 ISTVDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGVR 356 (398)
Q Consensus 318 a~~VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi~ 356 (398)
|+-+++|+.=.|+ +....|. .+.++++.+++..|..
T Consensus 260 and~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~ 296 (322)
T TIGR03550 260 IDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFT 296 (322)
T ss_pred CccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCC
Confidence 9999999641122 0001232 4789999999998874
No 89
>PRK08185 hypothetical protein; Provisional
Probab=97.19 E-value=0.13 Score=50.93 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=127.7
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhH
Q 015894 107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGF 178 (398)
Q Consensus 107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~i 178 (398)
++.+..+ +.++.+....++++-.+.+.+.|=-.++..-++.+ . ++...++.+ -.+.+.... .+.+.+
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----~-~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i 84 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG----D-NFFAYVRERAKRSPVPFVIHLDHGATIEDV 84 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc----H-HHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 35788888999999999999988776654333222 1 233444422 234444332 367889
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-----C---CCCHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-----G---MVPPSKV 250 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-----~---r~~~~~l 250 (398)
+.+++.|.+.|.+=-| ..+.++.++..++++++|+..|+.|++.+-..-+.++. + -++|+..
T Consensus 85 ~~ai~~Gf~SVM~D~S----------~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea 154 (283)
T PRK08185 85 MRAIRCGFTSVMIDGS----------LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQA 154 (283)
T ss_pred HHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHH
Confidence 9999999998776322 23678999999999999999999998877653222111 1 3466665
Q ss_pred HHHHHHHHhCCCCEEEE-ccCcCcC-----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 251 AYVSKQLYDMGCSEISL-GDTIGVG-----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L-~DT~G~~-----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.++.+ +.|+|.+.+ --|++.. .|.--.++++.+++..+ +||.+|+--... -.....|+..|+.-|+.
T Consensus 155 ~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~~--~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 155 EDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSANP--DAEIAESVQLGVGKINI 227 (283)
T ss_pred HHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCCCC--HHHHHHHHHCCCeEEEe
Confidence 54443 448997666 1222222 23334667788877764 689988876655 67788899999986654
No 90
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=97.19 E-value=0.055 Score=54.80 Aligned_cols=199 Identities=15% Similarity=0.157 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~ie~a~~~Gv~ 187 (398)
.+..+....++++-.+.+-+.|=-.++..-++.+ .+.+...++. .+.+.+.... .+.+.+.+|+++|..
T Consensus 23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFt 98 (347)
T TIGR01521 23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFT 98 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 5788888999999999999988776654333322 2233333332 1224444433 467889999999999
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------CC-----------CCCCHHH
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------VE-----------GMVPPSK 249 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~~-----------~r~~~~~ 249 (398)
.|.+=.| ... ..+...+.+|.++.-++++++|+..|+.|++.|-..-|.+ +. .-++|+.
T Consensus 99 SVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~Pee 175 (347)
T TIGR01521 99 SVMMDGS--LRE-DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEE 175 (347)
T ss_pred EEeecCc--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHH
Confidence 8887333 110 1233457889999999999999999999998887754332 11 1457777
Q ss_pred HHHHHHHHHhCCCCEE--EEccCcCcCC----H----HHHHHHHHHHHhhCCCCeEEEEeCCcc----------------
Q 015894 250 VAYVSKQLYDMGCSEI--SLGDTIGVGT----P----GTVIPMLEAVLDAVPVDKLAVHFHDTY---------------- 303 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I--~L~DT~G~~~----P----~~v~~lv~~l~~~~p~~~l~~H~Hnd~---------------- 303 (398)
..++++ +.|+|.+ .+.-.=|.-. | .+ .++++.+++.++++||.+|+=...
T Consensus 176 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~ 251 (347)
T TIGR01521 176 AADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK 251 (347)
T ss_pred HHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence 666654 5688854 3333444442 4 33 345788888886679999986643
Q ss_pred ---chHHHHHHHHHHhCCCEEeec
Q 015894 304 ---GQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 304 ---GlA~ANalaAl~aGa~~VD~S 324 (398)
|.-......|++.|+.-|+..
T Consensus 252 ~~~g~p~e~i~~ai~~GI~KVNi~ 275 (347)
T TIGR01521 252 ETYGVPVEEIVEGIKYGVRKVNID 275 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeeEEeC
Confidence 344788899999999877543
No 91
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.17 E-value=0.081 Score=52.18 Aligned_cols=191 Identities=17% Similarity=0.193 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--C-CcEEEEe---CCHhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--G-ARFPVLT---PNLKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~-~~l~~l~---~n~~~ie~a~~~Gv~ 187 (398)
.++.+....++++-.+.+.+.|=..+...-++.+. .+.+...++.+ . + +.+.... ...+.++.+++.|++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~ 99 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFS 99 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence 46788888899999999999887765443232221 22333333321 1 2 3333221 246778899999999
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC------CCCCCHHHHHHHHHHHHhCC
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV------EGMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~------~~r~~~~~l~~~a~~l~~~G 261 (398)
.|.+=.+ ..+.++.++..++++++|++.|..|.+.+-..-|.++ .+-++++...++.+ +.|
T Consensus 100 sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tg 166 (282)
T TIGR01859 100 SVMIDGS----------HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETG 166 (282)
T ss_pred EEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHC
Confidence 8877333 2357789999999999999999988866654322222 22457777655543 358
Q ss_pred CCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 262 CSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 262 ad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
+|.+.+. -.-|.. .|.-=.++++.+++.++ +||..|+ .-|+-..|...++++|++-|+..
T Consensus 167 vD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~hG--gSGi~~e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 167 VDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLHG--ASGIPEEQIKKAIKLGIAKINID 230 (282)
T ss_pred cCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEEC--CCCCCHHHHHHHHHcCCCEEEEC
Confidence 9887742 111111 12222445677777664 5676665 55777889999999999977654
No 92
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.16 E-value=0.064 Score=54.36 Aligned_cols=200 Identities=15% Similarity=0.214 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~ie~a~~~Gv~ 187 (398)
.+..+....++++-.+.+-+.|=-.++..-++.+ .+.+...++. .+.+.+.... .+.+.+.+|+++|..
T Consensus 25 ~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFt 100 (347)
T PRK13399 25 VNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFT 100 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788888999999999999987776554333322 2233333332 2224444332 356788999999999
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------C-----------CCCCCHHH
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------V-----------EGMVPPSK 249 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~-----------~~r~~~~~ 249 (398)
.|.+=.|.-+ .-+...+.+++++.-++++++|+..|+.|++.|-..-|.+ + ..-++|+.
T Consensus 101 SVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~Pee 177 (347)
T PRK13399 101 SVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQ 177 (347)
T ss_pred EEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHH
Confidence 8887433111 0112335789999999999999999999998886543222 2 11467877
Q ss_pred HHHHHHHHHhCCCCEE--EEccCcCcC----CHH---HHHHHHHHHHhhCCCCeEEEEeCCc------------------
Q 015894 250 VAYVSKQLYDMGCSEI--SLGDTIGVG----TPG---TVIPMLEAVLDAVPVDKLAVHFHDT------------------ 302 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I--~L~DT~G~~----~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd------------------ 302 (398)
..++++ +.|+|.+ .+.-.=|.- .|. ==.++++.+++.++++||.+|+=..
T Consensus 178 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 178 AVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 666655 4688854 333344443 232 2245678888888768999998664
Q ss_pred -cchHHHHHHHHHHhCCCEEeec
Q 015894 303 -YGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 303 -~GlA~ANalaAl~aGa~~VD~S 324 (398)
+|........|++.|+.-|+..
T Consensus 255 ~~g~~~e~~~kai~~GI~KINi~ 277 (347)
T PRK13399 255 TYGVPVEEIQRGIKHGVRKVNID 277 (347)
T ss_pred cCCCCHHHHHHHHHCCCeEEEeC
Confidence 3566788999999999877543
No 93
>PRK06801 hypothetical protein; Provisional
Probab=97.14 E-value=0.083 Score=52.26 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.++.+....++++-.+.+.+.|=-.+...-++ ...+.+...++.+ . .+.+.... .+.+.++.|++.|++.
T Consensus 25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftS 100 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKY----ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSS 100 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhc----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcE
Confidence 57888889999999999999876655433222 2334444444422 2 33333332 3577899999999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---------GMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---------~r~~~~~l~~~a~~l~~ 259 (398)
|.+=.| +.+.++.++..++++++|+.+|..|++.+-..-|.++. .-++|+...++++ +
T Consensus 101 Vm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~---~ 167 (286)
T PRK06801 101 VMFDGS----------TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD---R 167 (286)
T ss_pred EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH---H
Confidence 888332 23567899999999999999999988766653222211 1345665555443 5
Q ss_pred CCCCEEEEccCcCcC------CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 260 MGCSEISLGDTIGVG------TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 260 ~Gad~I~L~DT~G~~------~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
.|+|.+.+ ++|.. .|.-=.++++.+++..+ +||.+|+=. |....+...++++|++-|+..
T Consensus 168 tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHGGS--gi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 168 TGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHGGS--GISDADFRRAIELGIHKINFY 233 (286)
T ss_pred HCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEECCC--CCCHHHHHHHHHcCCcEEEeh
Confidence 79998877 33322 12222345667776665 578888754 677889999999999988654
No 94
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.13 E-value=0.26 Score=49.69 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEE
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEV 189 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v 189 (398)
..++.++..++++.+.+.|+..|.++. ..|-.. .|..++++.+++. +..+...+. +.+-++...+.|++.|
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~ii~~~~~~-g~~~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSG-GEPLAR---PDLVELVAHARRL-GLYTNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeC-cccccc---ccHHHHHHHHHHc-CCeEEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 358899999999999999998887753 222111 2445666666542 343333332 2345677788999999
Q ss_pred EEeccCch--HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 190 AIFASASE--SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 190 ~i~~~~Sd--~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.|.+...+ .|.+ ++. ....++++.+.++.+++.|+.+.+.+. + .+.+.+++.++++.+.+.|++.+.+
T Consensus 110 ~iSldg~~~e~~d~--~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~v--v-----~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 110 QLSFQGVDEALADR--IAG-YKNAFEQKLAMARAVKAAGLPLTLNFV--I-----HRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred EEeCcCCCHHHHHH--hcC-CccHHHHHHHHHHHHHhCCCceEEEEE--e-----ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 98665432 3322 221 223567777888999999998764333 2 2456788889999999999998876
No 95
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.09 E-value=0.18 Score=46.53 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCCH-hhHHHHHHcCCCEEEEe
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPNL-KGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n~-~~ie~a~~~Gv~~v~i~ 192 (398)
.+...-.+.++.+.+.|++.||++.-.. .++|.+....+.++.+++.++..+ ..++.+. +-++.+.++|++.|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg-~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDG-HFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 4455667899999999999999972111 111222222345556654444443 2444543 44778889999998875
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----c
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----G 268 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~ 268 (398)
....+ .....++.+|++|+.+...++ + .++.+.+.++ ..++|.|.+ +
T Consensus 87 ~~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~ 137 (210)
T TIGR01163 87 PEASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNP 137 (210)
T ss_pred cCCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcC
Confidence 43221 224556888899987653222 1 1233433333 245777655 3
Q ss_pred cCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 269 DTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 269 DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
-+.|...+....+.++.+++..+ ..++.+= -|.-..|.-.+++.|++.|=+
T Consensus 138 g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 138 GFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILVA 192 (210)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence 33443323334455666654432 2345443 377778888889999996543
No 96
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.08 E-value=0.034 Score=54.27 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCC-c-cc--CC---------CCHHHHHHHHHh----ccCCcEEEEeC-CH--
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPK-W-VP--QL---------ADAKDVMAAIQN----VEGARFPVLTP-NL-- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~-~-~p--~~---------~D~~~v~~~i~~----~~~~~l~~l~~-n~-- 175 (398)
-+.+.-+++++.|.+.|+|.||+|+|.|.+ + .| |. -..+..++.++. -+++.+..|+. |.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 467888999999999999999999987632 1 01 10 122344444442 24566766663 53
Q ss_pred -hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 176 -KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 176 -~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
.| ++.+.++|++.+-+.+-- ++...+..+.|+++|+.... +. .|. ++++.+
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~-lv----aPt---t~~~rl 163 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF-LV----APT---TPDERL 163 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE-Ee----CCC---CCHHHH
Confidence 34 457889999999886431 12334566788899998652 11 232 344555
Q ss_pred HHHHHHHHhCC-CCEEEEccCcCcCCH--HHHHHHHHHHHhhCCCCeEEE
Q 015894 251 AYVSKQLYDMG-CSEISLGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAV 297 (398)
Q Consensus 251 ~~~a~~l~~~G-ad~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~ 297 (398)
..+++.. -| +.-+...=+.|.-.| ..+.++++.+|+.. +.|+.+
T Consensus 164 ~~i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v 210 (265)
T COG0159 164 KKIAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV 210 (265)
T ss_pred HHHHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE
Confidence 5554321 23 345666677788777 34899999999866 344443
No 97
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.05 E-value=0.19 Score=48.86 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=108.1
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHH-H---HHHHHHhc---cCCcEEEE
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAK-D---VMAAIQNV---EGARFPVL 171 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~-~---v~~~i~~~---~~~~l~~l 171 (398)
|+-.|. |-..--+..++.++.++.++.+.+.|.+.|++|.... |... +. +.+ | +...++.+ .++.++.=
T Consensus 5 ilN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~-~i-~~~~E~~rl~~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 5 IVNVTP-DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGAD-RV-SPEEELNRVVPVIKALRDQPDVPISVD 81 (257)
T ss_pred EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CC-CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 333443 3333334457889999999999999999999985433 3321 12 233 3 33333322 25556555
Q ss_pred eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC------
Q 015894 172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV------ 245 (398)
Q Consensus 172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~------ 245 (398)
+.+.+-++.|++.|++.|.=.... + ..++++.+++.|..+. ++..-|.|.....
T Consensus 82 T~~~~vi~~al~~G~~iINsis~~---------~---------~~~~~~l~~~~~~~vV--~m~~~g~p~~~~~~~~~~~ 141 (257)
T TIGR01496 82 TYRAEVARAALEAGADIINDVSGG---------Q---------DPAMLEVAAEYGVPLV--LMHMRGTPRTMQENPHYED 141 (257)
T ss_pred CCCHHHHHHHHHcCCCEEEECCCC---------C---------CchhHHHHHHcCCcEE--EEeCCCCCcccccCCCccc
Confidence 678889999999998866532110 0 1234556778888775 3433333322100
Q ss_pred ----CHHHHHHHHHHHHhCCCC--EEEEccC-cCcC-CHHHHHHHHHHHHhhC-CCCe--EEE------------EeCCc
Q 015894 246 ----PPSKVAYVSKQLYDMGCS--EISLGDT-IGVG-TPGTVIPMLEAVLDAV-PVDK--LAV------------HFHDT 302 (398)
Q Consensus 246 ----~~~~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~lv~~l~~~~-p~~~--l~~------------H~Hnd 302 (398)
-.+++.+.++.+.+.|++ .|.| |. +|.. ++.+-.++++.++.-- ++.| +++ -..+.
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~~~~r 220 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTPPEER 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCChhhh
Confidence 013455666778889984 4444 44 3321 3445555555554210 2222 232 12233
Q ss_pred cchHHHHHHHHHHhCCCEE
Q 015894 303 YGQALSNILASLQMGISTV 321 (398)
Q Consensus 303 ~GlA~ANalaAl~aGa~~V 321 (398)
.+..++-+..|++.||++|
T Consensus 221 ~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 221 LEGTLAASAYAVQKGADIV 239 (257)
T ss_pred hHHHHHHHHHHHHcCCCEE
Confidence 3444555566777788765
No 98
>PRK09234 fbiC FO synthase; Reviewed
Probab=97.02 E-value=0.042 Score=61.80 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=138.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-------------CHhhH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-------------NLKGF 178 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------n~~~i 178 (398)
...++.++.++.++...+.|+..|-+-....|+. + .....++++.++ ..|++.+.++++ ..+-+
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~-~-~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l 631 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL-P-GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWL 631 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-C-HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHH
Confidence 4568999999999999999999998865555532 1 111233444454 356787777654 12345
Q ss_pred HHHHHcCCCEEEEeccCchHHHh---hhc---CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSK---SNI---NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~---~~~---~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
++..++|++.+.- ..-+++.. ..+ .++. +.-.++++.|+++|+.+...++ ||-. -+++..++
T Consensus 632 ~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~----~~wle~i~~Ah~lGi~~~stmm--~G~~----Et~edrv~ 699 (843)
T PRK09234 632 TALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPT----AEWIEVVTTAHEVGLRSSSTMM--YGHV----DTPRHWVA 699 (843)
T ss_pred HHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCCcccceE--EcCC----CCHHHHHH
Confidence 7888999997752 11122211 111 1122 2235788999999999987766 5532 25788888
Q ss_pred HHHHHHhCCCC-----EEE-----EccC----c----CcCCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHHHHH
Q 015894 253 VSKQLYDMGCS-----EIS-----LGDT----I----GVGTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 253 ~a~~l~~~Gad-----~I~-----L~DT----~----G~~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~ANala 312 (398)
.+..+.+.+.+ .+. -.+| . ...+|.+...+++..|=.+|+ .+|-.-. .++|. .-+..
T Consensus 700 hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~lg~--~~~q~ 776 (843)
T PRK09234 700 HLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKLGV--EGTRA 776 (843)
T ss_pred HHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhcCH--HHHHH
Confidence 88888877653 211 2233 1 236778888888887766763 1222222 34453 34578
Q ss_pred HHHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCC
Q 015894 313 SLQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGV 355 (398)
Q Consensus 313 Al~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi 355 (398)
++.+||+-+++|+..=-==+.|+...| ..+.+++....+..|.
T Consensus 777 ~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~ 820 (843)
T PRK09234 777 MLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGR 820 (843)
T ss_pred HHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCC
Confidence 899999988887642100112222333 3568889888887776
No 99
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.01 E-value=0.14 Score=51.03 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cC---CcEEEEe---CCHhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EG---ARFPVLT---PNLKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~---~~l~~l~---~n~~~ie~a~~~Gv~ 187 (398)
.+..+....++++-.+.+.+.|=-.+...-++. ..+.+...++.. .. +.+.... .+.+.+.+|+++|..
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~----g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gft 99 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT 99 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhC----ChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence 578888889999999999998877654433322 223333333321 22 4444433 367889999999999
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~ 259 (398)
.|.+=.| ..+.++.++.-++++++|+..|+.|++.|-..-|.++. ..++|+...++++ +
T Consensus 100 SVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~ 166 (307)
T PRK05835 100 SVMIDAS----------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E 166 (307)
T ss_pred EEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---h
Confidence 8887333 23567899999999999999999999888776444432 1466777666554 5
Q ss_pred CCCCEE--EEccCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEeCCccch-------------------HHHHHHHHH
Q 015894 260 MGCSEI--SLGDTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-------------------ALSNILASL 314 (398)
Q Consensus 260 ~Gad~I--~L~DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-------------------A~ANalaAl 314 (398)
.|+|.+ .+.-+=|.-. |.==.++++.+++.+ ++||.+|+=...+- .+-....|+
T Consensus 167 TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai 245 (307)
T PRK05835 167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV 245 (307)
T ss_pred hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH
Confidence 699963 4444444432 444455777788777 46899998654333 344788888
Q ss_pred HhCCCEEee
Q 015894 315 QMGISTVDS 323 (398)
Q Consensus 315 ~aGa~~VD~ 323 (398)
..|+.-|+.
T Consensus 246 ~~GI~KiNi 254 (307)
T PRK05835 246 KGGINKVNT 254 (307)
T ss_pred HcCceEEEe
Confidence 888876643
No 100
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=97.01 E-value=0.08 Score=50.97 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhccCCcEEEEeC-------C-----H-----------
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNVEGARFPVLTP-------N-----L----------- 175 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~-------n-----~----------- 175 (398)
-.+.++.+.++|++.||++......+.|.. .+.+++.+.+.. -++++.++.+ | .
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 456788889999999999642111111212 123334333332 2444444321 1 0
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVPPSKVAYV 253 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~~~~l~~~ 253 (398)
+.++.|...|++.+.+........ ....-.++...+.++++.++|++.|+.+.. ... .|..+ ..+++.+.++
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i--E~~--~~~~~~~~~t~~~~~~l 167 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMDLIL--EPL--TPYESNVVCNANDVLHA 167 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCEEEE--ecC--CCCcccccCCHHHHHHH
Confidence 124567778999988754311000 000012455667788889999999987642 211 11111 2245665555
Q ss_pred HHHHHhCCCC-EEEEccCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCC
Q 015894 254 SKQLYDMGCS-EISLGDTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGC 331 (398)
Q Consensus 254 a~~l~~~Gad-~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGec 331 (398)
++ +.+-+ .-.+.|+.=. ....++.+.++.+ +.--.++|.+|..+-. .+
T Consensus 168 ~~---~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~----~~rI~~vHi~D~~~~~-----------------------~~ 217 (275)
T PRK09856 168 LA---LVPSPRLFSMVDICAPYVQAEPVMSYFDKL----GDKLRHLHIVDSDGAS-----------------------DT 217 (275)
T ss_pred HH---HcCCCcceeEEeecchhcCCCCHHHHHHHh----CCcEEEEEEEcCCCCC-----------------------CC
Confidence 54 44432 2233477432 1223333334333 3334889999986520 11
Q ss_pred CCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 332 PYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 332 p~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
...+ +.|+.+..+++..|++.|++
T Consensus 218 ~~~p-G~G~id~~~i~~~L~~~gy~ 241 (275)
T PRK09856 218 HYIP-GEGKMPLRELMRDIIDRGYE 241 (275)
T ss_pred CcCC-CCCCCCHHHHHHHHHHcCCC
Confidence 1223 36899999999999998875
No 101
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.00 E-value=0.15 Score=50.27 Aligned_cols=190 Identities=16% Similarity=0.204 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.+..+....++++-.+.+.+.|=-.++..-++. ..+.+...++.. . .+.+.... .+.+.+.+|+++|...
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~----~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftS 95 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYA----GLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSS 95 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCE
Confidence 467788888999999999997665544322221 233344444322 2 33333332 3568899999999998
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga 262 (398)
|.+=.|. .+.++.++.-++++++|+..|+.|++.+-..-|.++. .-++|+...++++ +.|+
T Consensus 96 VMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~---~Tgv 162 (276)
T cd00947 96 VMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVE---ETGV 162 (276)
T ss_pred EEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHH---HHCC
Confidence 8873331 3578999999999999999999999888876554432 1467877777665 4688
Q ss_pred CEEE--EccCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 263 SEIS--LGDTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 263 d~I~--L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
|.+. +.-+=|.- .|.==.++++.+++.++ +||.+|+= -|+.--....|++.|+.-|+..
T Consensus 163 D~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 163 DALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHGG--SGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred CEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEeC
Confidence 8643 33343333 45445567888888774 67888774 5777788899999999877543
No 102
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.97 E-value=0.21 Score=49.45 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--C--CcEEEEe---CCHhhHHHHHHcCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--G--ARFPVLT---PNLKGFEAAVAAGA 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~--~~l~~l~---~n~~~ie~a~~~Gv 186 (398)
.+..+....++++-.+.+-+.|=-.++..-++. ...+.+...++.. . + +.+.... .+.+.+.+|+++|.
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF 101 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 478888889999999999998776654332220 1233333344321 1 2 3333332 35688899999999
Q ss_pred CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 015894 187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G--MVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~--r~~~~~l~~~a~~l~~~ 260 (398)
..|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. . -++|+...++++ +.
T Consensus 102 tSVM~DgS----------~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~T 168 (285)
T PRK07709 102 TSVMIDAS----------HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---AT 168 (285)
T ss_pred CEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---Hh
Confidence 98887433 23568999999999999999999999888876554442 1 378887777655 46
Q ss_pred CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+.+ .-.=|.- .|.==.++++.+++.++ +||.+|+ ..|+.-.....|++.|+.-|+.
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 169 GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEEe
Confidence 9986443 3233332 24333456777777764 6788776 4677778899999999876643
No 103
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.97 E-value=0.12 Score=51.89 Aligned_cols=229 Identities=12% Similarity=0.073 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCccc-----CCCC--HHHHHHHHHhc----cCC-cEEEEeC---CHhhHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVP-----QLAD--AKDVMAAIQNV----EGA-RFPVLTP---NLKGFE 179 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p-----~~~D--~~~v~~~i~~~----~~~-~l~~l~~---n~~~ie 179 (398)
.++.++.++.++.+.+.|+..|-+.....|.... .+.+ ..+..+.++++ ... .+..+.. +.+.++
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~ 119 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEME 119 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHH
Confidence 6899999999999999999998887544432110 0000 12233333321 111 1111211 345677
Q ss_pred HHHHcCCCEEEEe-ccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH---HH
Q 015894 180 AAVAAGAKEVAIF-ASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY---VS 254 (398)
Q Consensus 180 ~a~~~Gv~~v~i~-~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~---~a 254 (398)
...++|+. +.+. -+.++...+.. +. .+....+...+.++.|++.|+.+...++ +|- .+ +.+...+ .+
T Consensus 120 ~Lk~ag~~-l~~~~et~~e~l~~~v-~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i--~G~-gE---t~ed~~~~l~~l 191 (336)
T PRK06245 120 KLKEVNAS-MGLMLEQTSPRLLNTV-HRGSPGKDPELRLETIENAGKLKIPFTTGIL--IGI-GE---TWEDRAESLEAI 191 (336)
T ss_pred HHHHhCCC-CCCCccccchhhHHhh-ccCCCCCCHHHHHHHHHHHHHcCCceeeeee--eEC-CC---CHHHHHHHHHHH
Confidence 77776654 3332 33445443311 11 1111223345778899999999876666 442 22 3444444 33
Q ss_pred HHHH-hCC-CCEEEE------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 255 KQLY-DMG-CSEISL------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 255 ~~l~-~~G-ad~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
+.+. +.| ++.+.+ ..| ....++.+..++++..|..+|. .+.+-.--++|. .-...++.+||+-++
T Consensus 192 ~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~ 268 (336)
T PRK06245 192 AELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLG 268 (336)
T ss_pred HHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCcccc
Confidence 3332 333 444431 122 2245668888989998888864 233222224444 334466999999999
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 323 SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 323 ~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
+++...|+ -..+... ..++++++.+++..|..
T Consensus 269 g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 269 GISPVTKD-YVNPEYP-WPDIEELREILEEAGWP 300 (336)
T ss_pred CCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence 99886655 1111112 34789999999988763
No 104
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.95 E-value=0.15 Score=47.00 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS 194 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~ 194 (398)
+.++-.++++.|.+.|++.||+..-. + +..+.++.++ ..++..+.+ .+.+..+++.++++|++.++.-.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~-~-------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~- 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRT-P-------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG- 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC-
Confidence 57788899999999999999998632 1 1223444444 445555554 33578899999999999997421
Q ss_pred CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894 195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274 (398)
Q Consensus 195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~ 274 (398)
++ .++++++++.|..+.+ +..+++++ .++.++|+|.|.+ +..
T Consensus 85 -~~------------------~~~~~~~~~~~~~~i~-----------gv~t~~e~----~~A~~~Gad~i~~-~p~--- 126 (190)
T cd00452 85 -LD------------------PEVVKAANRAGIPLLP-----------GVATPTEI----MQALELGADIVKL-FPA--- 126 (190)
T ss_pred -CC------------------HHHHHHHHHcCCcEEC-----------CcCCHHHH----HHHHHCCCCEEEE-cCC---
Confidence 11 2567788888876541 12255553 3445799999988 432
Q ss_pred CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 275 ~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.|. -.++++.++..+|..++..=+ |.-..|....+++|++.|-
T Consensus 127 ~~~-g~~~~~~l~~~~~~~p~~a~G----GI~~~n~~~~~~~G~~~v~ 169 (190)
T cd00452 127 EAV-GPAYIKALKGPFPQVRFMPTG----GVSLDNAAEWLAAGVVAVG 169 (190)
T ss_pred ccc-CHHHHHHHHhhCCCCeEEEeC----CCCHHHHHHHHHCCCEEEE
Confidence 232 455677777777766666544 4445788899999988664
No 105
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.95 E-value=0.16 Score=50.23 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cC--CcEEEEe---CCHhhHHHHHHcCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EG--ARFPVLT---PNLKGFEAAVAAGA 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~--~~l~~l~---~n~~~ie~a~~~Gv 186 (398)
.+..+....++++-.+.+.+.|=-.++..-++. ...+.+...++.. -+ +.+.... .+.+.+.+|+++|.
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~---~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYM---SGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc---CcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 477888889999999999998776554332221 1123333334321 12 3333332 36788999999999
Q ss_pred CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---C---CCCHHHHHHHHHHHHhC
Q 015894 187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---G---MVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~---r~~~~~l~~~a~~l~~~ 260 (398)
..|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. . -++|+...++++ +.
T Consensus 102 tSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~T 168 (286)
T PRK08610 102 TSVMIDAS----------HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KT 168 (286)
T ss_pred CEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HH
Confidence 98887433 23578999999999999999999999888876444432 1 368888777664 56
Q ss_pred CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+.+ .-.=|.- .|.==.++++.+++.++ +||.+|+ ..|..-.....|+..|+.-|+.
T Consensus 169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi 232 (286)
T PRK08610 169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIPFGTAKINV 232 (286)
T ss_pred CCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 8885433 2233332 24323456777777764 6888776 4677778899999999876643
No 106
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.94 E-value=0.11 Score=48.58 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C----C----HhhHHHHHHc
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P----N----LKGFEAAVAA 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----n----~~~ie~a~~~ 184 (398)
..+.++..++++...+.|++.+-+. |.+++ ...+.++. .++.+.+.+ | . ...++.|++.
T Consensus 13 ~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~------~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 13 DATEEDIRKLCDEAKEYGFAAVCVN----PCFVP------LAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc----HHHHH------HHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 4578888899999999999998875 22211 11112221 234443333 2 1 1357899999
Q ss_pred CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|++.|.+.+...... .-..++.++.+.++++.|. |..+.+-+. . +..+++.+...++.+.++|+|.
T Consensus 82 GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e--~-----~~l~~~~i~~a~ria~e~GaD~ 147 (203)
T cd00959 82 GADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILE--T-----GLLTDEEIIKACEIAIEAGADF 147 (203)
T ss_pred CCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCCCE
Confidence 999999987654221 1234667888888888775 776654222 1 2346789999999999999998
Q ss_pred EEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEEeec
Q 015894 265 ISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 265 I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
|-.. =+.+..+|.++..+-+.++...| |-+=+ -.| ...++.-+++|++++-+|
T Consensus 148 IKTsTG~~~~~at~~~v~~~~~~~~~~v~---ik~aGGikt----~~~~l~~~~~g~~riG~s 203 (203)
T cd00959 148 IKTSTGFGPGGATVEDVKLMKEAVGGRVG---VKAAGGIRT----LEDALAMIEAGATRIGTS 203 (203)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHhCCCce---EEEeCCCCC----HHHHHHHHHhChhhccCC
Confidence 8776 23345677888777777663232 22211 113 355666777799887553
No 107
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.029 Score=56.95 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=78.4
Q ss_pred eCCHhhHHHHHHcCCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 172 TPNLKGFEAAVAAGAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 172 ~~n~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
..+.+++..+++.|+|.|.+--. .+-. ..+ .+.+.++ +.+.|++|.++|.++.+.++... .....+.+
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R-~~a-~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~ 81 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLR-RRA-LNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETL 81 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccc-ccc-ccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHH
Confidence 34789999999999998887543 2211 111 3455555 67889999999998876666432 12234567
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH 300 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H 300 (398)
.+..+.+.++|+|.|.+.|. -++..+++..|++++++=++
T Consensus 82 ~~~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~S~q 121 (347)
T COG0826 82 ERYLDRLVELGVDAVIVADP----------GLIMLARERGPDLPIHVSTQ 121 (347)
T ss_pred HHHHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEEeee
Confidence 78899999999999999994 46778888899877776444
No 108
>PTZ00413 lipoate synthase; Provisional
Probab=96.90 E-value=0.063 Score=54.95 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHH---HHHHHh-ccCCcEEEEeC----CHhhHHHHHHcC
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDV---MAAIQN-VEGARFPVLTP----NLKGFEAAVAAG 185 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~-~~~~~l~~l~~----n~~~ie~a~~~G 185 (398)
..++.++..++|+...+.|++++-+++...++ ++. ..++.+ ++.+++ .|++.+.++++ +.+.++..+++|
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D-~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG 252 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPD-GGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSP 252 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CCh-hhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcC
Confidence 45799999999999999999999888865432 110 123434 444454 46788888876 567788999999
Q ss_pred CCEEEEeccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 AKEVAIFASASESFSKSNI--NCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
++.++-=+-+++.+....- +-+.++.++ +++.||+. |+.+...++ +|. -+ +.+++.++++.+.+.
T Consensus 253 ~dvynHNLETv~rLyp~VRt~~atYe~sLe----~Lr~AKe~f~~gi~tcSGiI--VGL-GE---T~eEvie~m~dLrel 322 (398)
T PTZ00413 253 LSVYAHNIECVERITPYVRDRRASYRQSLK----VLEHVKEFTNGAMLTKSSIM--LGL-GE---TEEEVRQTLRDLRTA 322 (398)
T ss_pred CCEEecccccCHhHHHHHccCcCCHHHHHH----HHHHHHHHhcCCceEeeeeE--ecC-CC---CHHHHHHHHHHHHHc
Confidence 9998876666665543322 235665554 45667765 777765666 442 22 468899999999999
Q ss_pred CCCEEEEcc
Q 015894 261 GCSEISLGD 269 (398)
Q Consensus 261 Gad~I~L~D 269 (398)
|+|.+.|.-
T Consensus 323 GVDivtIGQ 331 (398)
T PTZ00413 323 GVSAVTLGQ 331 (398)
T ss_pred CCcEEeecc
Confidence 999998744
No 109
>PLN02428 lipoic acid synthase
Probab=96.89 E-value=0.097 Score=53.16 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=105.6
Q ss_pred cEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeC
Q 015894 98 VKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTP 173 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~ 173 (398)
+.-.+|.+-.-.... ......++..++++.+.+.|++++-+.+...+++ |. .....++++.+++ .|++++.++.+
T Consensus 111 gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~p 189 (349)
T PLN02428 111 TCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVP 189 (349)
T ss_pred CCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 444455444332222 2345677778999999999999988876543221 11 1123455566664 47788888876
Q ss_pred C----HhhHHHHHHcCCCEEEEeccCchHHHhhhcC---CCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894 174 N----LKGFEAAVAAGAKEVAIFASASESFSKSNIN---CTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM 244 (398)
Q Consensus 174 n----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~---~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r 244 (398)
. .+-++...++|++.+..-.-+++... .+++ .+.++.+ ++++.|++. |+.+..+++. |. .+
T Consensus 190 df~~d~elL~~L~eAG~d~i~hnlETv~rL~-~~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~Mv--GL-GE-- 259 (349)
T PLN02428 190 DFRGDLGAVETVATSGLDVFAHNIETVERLQ-RIVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIML--GL-GE-- 259 (349)
T ss_pred cccCCHHHHHHHHHcCCCEEccCccCcHHHH-HHhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEE--ec-CC--
Confidence 3 45678889999999877666666543 3443 3555554 556778888 9988777774 43 12
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
+.+++.+.++.+.+.|+|.+.|.=
T Consensus 260 -T~Edv~e~l~~Lrelgvd~vtigq 283 (349)
T PLN02428 260 -TDEEVVQTMEDLRAAGVDVVTFGQ 283 (349)
T ss_pred -CHHHHHHHHHHHHHcCCCEEeecc
Confidence 578999999999999999986643
No 110
>PRK12928 lipoyl synthase; Provisional
Probab=96.89 E-value=0.025 Score=56.02 Aligned_cols=162 Identities=22% Similarity=0.259 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhc-cCCcEEEEeCC-----HhhHHHHHHcC
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNV-EGARFPVLTPN-----LKGFEAAVAAG 185 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~n-----~~~ie~a~~~G 185 (398)
..++.++.++.++.+.+.|++.|-+++...++. |.. ....++++.+++. |.+++-++.+. .+.++...++|
T Consensus 85 ~~~~~eei~~~a~~~~~~G~keivitg~~~dDl-~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 85 MPLDPDEPERVAEAVAALGLRYVVLTSVARDDL-PDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcc-cccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC
Confidence 468999999999999999999998876443221 111 1234566666654 67888887763 34577888899
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS--IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
.+.+...+..+|...+ .++.. ...+...++++.|++.| +.+...++ +|. +. +.+.+.+..+.+.+.|++
T Consensus 164 ~~i~~hnlEt~~~vl~-~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iI--vG~---GE-T~ed~~etl~~Lrel~~d 234 (290)
T PRK12928 164 PDVFNHNLETVPRLQK-AVRRG--ADYQRSLDLLARAKELAPDIPTKSGLM--LGL---GE-TEDEVIETLRDLRAVGCD 234 (290)
T ss_pred chhhcccCcCcHHHHH-HhCCC--CCHHHHHHHHHHHHHhCCCceecccEE--EeC---CC-CHHHHHHHHHHHHhcCCC
Confidence 8877765565654333 33321 22344456778899998 77776666 442 22 578888999999999999
Q ss_pred EEEEcc----------CcCcCCHHHHHHHHHH
Q 015894 264 EISLGD----------TIGVGTPGTVIPMLEA 285 (398)
Q Consensus 264 ~I~L~D----------T~G~~~P~~v~~lv~~ 285 (398)
.+.+.= -..+.+|+++..+-..
T Consensus 235 ~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~ 266 (290)
T PRK12928 235 RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQI 266 (290)
T ss_pred EEEEEcCCCCCccCCceeeccCHHHHHHHHHH
Confidence 887722 2345566666554433
No 111
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.88 E-value=0.15 Score=50.38 Aligned_cols=189 Identities=16% Similarity=0.259 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.+..+....++++-.+.+-+.|=-.++..-++ ...+.+...++.. .++.+.... .+.+.+++|+++|.+.
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~----~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftS 100 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQL----SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTS 100 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCE
Confidence 46778888899999999999887665432221 1233333344321 234333332 3677899999999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga 262 (398)
|.+=.| ..+.+++++.-++++++|+..|+.|++.+-..-|.++. .-++|+...++++ +.|+
T Consensus 101 VM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~---~Tgv 167 (283)
T PRK07998 101 VMIDGA----------ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVE---RTGC 167 (283)
T ss_pred EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHH---HhCc
Confidence 888322 23677899999999999999999998888776454432 1367877666544 5688
Q ss_pred CEEEEc--cCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 263 SEISLG--DTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 263 d~I~L~--DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|.+-++ -.=|.-. |.-=.++++.+++..+ +||.+|+=. |..--....|++.|+.-|+.
T Consensus 168 D~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 168 DMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGGS--GIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred CeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCCC--CCCHHHHHHHHHcCCcEEEE
Confidence 854332 2223221 4322477888887764 588888754 66677888999999986654
No 112
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.88 E-value=0.065 Score=51.13 Aligned_cols=152 Identities=23% Similarity=0.315 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-----hccCCcEEEEe-CCHhhHHHHHHcCCCEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-----NVEGARFPVLT-PNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-----~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v 189 (398)
-+.++-+++++.|.+.|++.||+++-. | +..+.++.++ +.|+..+.+=+ .+.++++.++++|++.+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi 95 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI 95 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence 467888999999999999999999732 2 2334444442 34555555433 68999999999999965
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-- 267 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-- 267 (398)
-- +.+ -.+++++|+++|+.+-. +-.+|.++.. +.++|++.|-+
T Consensus 96 Vs-----P~~---------------~~~v~~~~~~~~i~~iP-----------G~~TpsEi~~----A~~~Ga~~vKlFP 140 (222)
T PRK07114 96 VT-----PLF---------------NPDIAKVCNRRKVPYSP-----------GCGSLSEIGY----AEELGCEIVKLFP 140 (222)
T ss_pred EC-----CCC---------------CHHHHHHHHHcCCCEeC-----------CCCCHHHHHH----HHHCCCCEEEECc
Confidence 42 211 03678899999997642 3356766544 56799998655
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH--HHHHHHHHhCCCEE
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL--SNILASLQMGISTV 321 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~--ANalaAl~aGa~~V 321 (398)
+++.| | .+++.++.-+|++++- -+-|... .|.-.=+.+|+..|
T Consensus 141 A~~~G---~----~~ikal~~p~p~i~~~----ptGGV~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 141 GSVYG---P----GFVKAIKGPMPWTKIM----PTGGVEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred ccccC---H----HHHHHHhccCCCCeEE----eCCCCCcchhcHHHHHhCCCEEE
Confidence 45433 3 4567777777765443 3446555 57777778887644
No 113
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.87 E-value=0.26 Score=48.75 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.+..+....++++-.+.+-+.|=-.+...-++. ..+.+...++.+ .++.+.... .+.+.+.+|+++|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS 100 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS 100 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 477888888999999999998876544322211 233333444321 234444432 4678899999999998
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G----MVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~----r~~~~~l~~~a~~l~~~ 260 (398)
|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. . .++|+...++++ +.
T Consensus 101 VM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~---~T 167 (286)
T PRK12738 101 AMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT 167 (286)
T ss_pred EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH---Hh
Confidence 877333 23568999999999999999999999888876444442 1 467777766654 45
Q ss_pred CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+.+ .-.=|.- .|.==.++++.+++..+ +||.+|+= -|..--....|++.|+.-|+.
T Consensus 168 gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHGg--SG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 168 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHGA--SDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 8886433 3233332 35445667888888774 68888775 455578889999999986643
No 114
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.86 E-value=0.061 Score=53.22 Aligned_cols=190 Identities=18% Similarity=0.210 Sum_probs=124.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEE---eCCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVL---TPNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l---~~n~~~ie~a~~~Gv~~ 188 (398)
.++.+....++++-.+.+.+.|=-.++..-++. ..+.+...++.. -++.+... +.+.+.+++|+++|.+.
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftS 99 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTS 99 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSE
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccc
Confidence 467888888999999999997665543221111 123333333321 24444443 24778899999999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---------GMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---------~r~~~~~l~~~a~~l~~ 259 (398)
|.+=.| ..+.+|+++.-++++++|++.|+.|++.|-..-|.++. .-++|+...++++ +
T Consensus 100 VM~DgS----------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~---~ 166 (287)
T PF01116_consen 100 VMIDGS----------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE---E 166 (287)
T ss_dssp EEEE-T----------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH---H
T ss_pred ccccCC----------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH---H
Confidence 876322 23578899999999999999999999988877554432 1367877666654 6
Q ss_pred CCCCEEEE--ccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 260 MGCSEISL--GDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 260 ~Gad~I~L--~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.|+|.+.+ .-.=|.- .|.==.++++.+++..|++||.+|+ .-|+.--....|++.|+.-|+.
T Consensus 167 TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 167 TGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp HTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEE
T ss_pred hCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEE
Confidence 79997443 3332322 4444467788888888556888776 5677778999999999887754
No 115
>PRK15452 putative protease; Provisional
Probab=96.85 E-value=0.02 Score=59.98 Aligned_cols=112 Identities=13% Similarity=-0.006 Sum_probs=75.1
Q ss_pred CcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894 166 ARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 166 ~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~ 245 (398)
.++.+.+.+.+.++.|+++|+|.|.+-..--.. ....-+.+. +.+++++++|+++|.+|-+.+.... ...
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~-R~~~~~f~~----edl~eav~~ah~~g~kvyvt~n~i~-----~e~ 73 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSL-RVRNNEFNH----ENLALGINEAHALGKKFYVVVNIAP-----HNA 73 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccch-hhhccCCCH----HHHHHHHHHHHHcCCEEEEEecCcC-----CHH
Confidence 467777889999999999999999884331110 000112333 4577889999999988765444211 112
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV 297 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~ 297 (398)
+.+.+.+..+.+.+.|+|.|.+.|. -++..+++..|+.+|+.
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~d~----------G~l~~~ke~~p~l~ih~ 115 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMSDP----------GLIMMVREHFPEMPIHL 115 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCH----------HHHHHHHHhCCCCeEEE
Confidence 3456777788888999999999993 34566777778755533
No 116
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.83 E-value=0.19 Score=48.45 Aligned_cols=203 Identities=15% Similarity=0.078 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCC-ccc-CCC--CHHHHHHHHHhccCCcEEEEeC-----------CH-----------
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPK-WVP-QLA--DAKDVMAAIQNVEGARFPVLTP-----------NL----------- 175 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~-~~p-~~~--D~~~v~~~i~~~~~~~l~~l~~-----------n~----------- 175 (398)
.+.++.+.++|++.||+....... ..+ .+. +..++.+.++. .++++.+++. +.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~ 97 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-TGVRIPSMCLSGHRRFPFGSRDPATRERALEIMK 97 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-cCCCceEEecccccCcCCCCCCHHHHHHHHHHHH
Confidence 346667779999999997532110 000 111 12233333332 3455544321 11
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+-++.|.+.|++.|++... +.+.........+...+.+.++.++|++.|+.+...-. +...-.+++.+..+++
T Consensus 98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~-----~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM-----DTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec-----CccccCCHHHHHHHHH
Confidence 1245667789999987421 10000000113456677788889999999987652111 1111234555555554
Q ss_pred HHHhCCCCEEEEc-cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCC
Q 015894 256 QLYDMGCSEISLG-DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334 (398)
Q Consensus 256 ~l~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a 334 (398)
. .+-+.+.++ |+. .+.=.. .+....++. ..+--.++|.+|..+.-. + .-|+.-..
T Consensus 171 ~---v~~~~~~~~~D~~-h~~~~~-~~~~~~l~~-~~~~i~~vHikD~~~~~~---------~---------~~g~~~~~ 226 (284)
T PRK13210 171 E---IDSPWLTVYPDVG-NLSAWG-NDVWSELKL-GIDHIAAIHLKDTYAVTE---------T---------SKGQFRDV 226 (284)
T ss_pred H---cCCCceeEEecCC-hhhhcC-CCHHHHHHH-hcCeEEEEEecccccccc---------C---------CCCccccc
Confidence 3 354555554 542 111000 012223322 333348999999754210 0 00110111
Q ss_pred CCCCCCccHHHHHHHHHhCCCC
Q 015894 335 KGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 335 ~graGNa~lE~vv~~L~~~Gi~ 356 (398)
+-+.|+.+...++.+|+..|++
T Consensus 227 p~G~G~id~~~~~~~L~~~gy~ 248 (284)
T PRK13210 227 PFGEGCVDFVGIFKTLKELNYR 248 (284)
T ss_pred cCCCcccCHHHHHHHHHHcCCC
Confidence 1137899999999999987765
No 117
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.82 E-value=0.24 Score=48.99 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.++.+....++++-.+.+-+.|=-.++..-++. ..+.+...++.. . .+.+.... .+.+.+.+|+++|...
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftS 100 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA----GIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTS 100 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence 467888888999999999998776654332222 123333333321 2 33333332 3667899999999998
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---C-----CCCHHHHHHHHHHHHhC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---G-----MVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~-----r~~~~~l~~~a~~l~~~ 260 (398)
|.+=.| ..+.+|+++.-++++++|+..|+.|++.|-..-|.++. . -++|+...++++ +.
T Consensus 101 VM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~T 167 (284)
T PRK12857 101 VMIDGS----------KLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ET 167 (284)
T ss_pred EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HH
Confidence 877333 13568999999999999999999999888876554432 1 367777666654 56
Q ss_pred CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+.+ .-.=|.- .|.==.++++.+++.++ +||.+|+= -|+.-.....|++.|+.-|+.
T Consensus 168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK12857 168 GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHGS--SGVPDEAIRKAISLGVRKVNI 231 (284)
T ss_pred CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 8885433 3333332 35444567788887764 57887774 577788899999999986654
No 118
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.81 E-value=0.26 Score=47.80 Aligned_cols=182 Identities=11% Similarity=0.001 Sum_probs=116.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHH---hccCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQ---NVEGARFPVLTPNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~n~~~ie~a~~~Gv~~v 189 (398)
=+.++..++++.+.++|+..+--|+|- +|...-.+ ..+ -++.++ +-.+..+..=+.+..+++.+.+ .+|.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G~~-gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdil 102 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-GLQ-GIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVI 102 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-CHH-HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEE
Confidence 377888999999999999999999874 22211111 112 233333 2234544444457788888888 69988
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
.|-... +.. .++++++.+.|..|. +.. ....+++++...++.+.+.|.+.|.|+-
T Consensus 103 qIgs~~----------~~n-------~~LL~~va~tgkPVi--lk~------G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 103 QVGARN----------MQN-------FEFLKTLSHIDKPIL--FKR------GLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred EECccc----------ccC-------HHHHHHHHccCCeEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 885331 111 244556666788875 331 1146899999999999999999898886
Q ss_pred --CcCcCCHHH-HH--HHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeeccc
Q 015894 270 --TIGVGTPGT-VI--PMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSVS 326 (398)
Q Consensus 270 --T~G~~~P~~-v~--~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~ 326 (398)
+.|+-+|.+ +. .-+..+++.+. .||.+ |.=-.+-+..+-+++|+.+||+ +|+.-..
T Consensus 158 Rg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~ 223 (250)
T PRK13397 158 RGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPD 223 (250)
T ss_pred cccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 444444432 22 33556666553 45434 5433444566889999999999 8876554
No 119
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.81 E-value=0.25 Score=48.88 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=131.4
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhH
Q 015894 107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGF 178 (398)
Q Consensus 107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~i 178 (398)
++.+..+ +.+..+....++++-.+.+.+.|=-.++..-++.+ .+.+...++.. . ++.+.... .+.+.+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i 90 (284)
T PRK12737 15 AEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHLDHHEDLDDI 90 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444443 35788888899999999999987665543322221 23333334321 2 33333332 356789
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKV 250 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l 250 (398)
.+|+++|...|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. .-++|+..
T Consensus 91 ~~ai~~GftSVMiDgS----------~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA 160 (284)
T PRK12737 91 KKKVRAGIRSVMIDGS----------HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAA 160 (284)
T ss_pred HHHHHcCCCeEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHH
Confidence 9999999998876332 23578999999999999999999999888876555442 14688877
Q ss_pred HHHHHHHHhCCCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 251 AYVSKQLYDMGCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
.++++ +.|+|.+.++ -.=|.- .|.==.++++.+++..+ +||.+|+ .-|..--....|++.|+.-|+..
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 161 AEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred HHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEeC
Confidence 77665 4689864433 233332 34333456777877664 5787776 55666788999999999877653
No 120
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.79 E-value=0.29 Score=48.35 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.++.+....++++-.+.+.+.|=-.++..-++. ..+.+...++.+ . ++.+.... .+.+.+.+|+++|...
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS 98 (282)
T TIGR01858 23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRS 98 (282)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 578888889999999999998776654332221 234444444422 2 33333332 3678899999999998
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~ 260 (398)
|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. .-++|+...++++ +.
T Consensus 99 VM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T 165 (282)
T TIGR01858 99 AMIDGS----------HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE---AT 165 (282)
T ss_pred EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH---HH
Confidence 887333 13568999999999999999999999888876454442 1467777666644 67
Q ss_pred CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+.+ .-+=|.- .|.==.++++.+++.++ +||.+|+= -|+.--....|+..|+.-|+.
T Consensus 166 gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 166 GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHGA--SDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEecC--CCCCHHHHHHHHHcCCeEEEe
Confidence 9986433 2233322 24334457778887774 57888774 566678889999999986654
No 121
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.11 Score=48.47 Aligned_cols=180 Identities=18% Similarity=0.226 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccC----CcEEEEeCCHhh-HHHHHHcCCCEEEEecc
Q 015894 124 LIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEG----ARFPVLTPNLKG-FEAAVAAGAKEVAIFAS 194 (398)
Q Consensus 124 ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~----~~l~~l~~n~~~-ie~a~~~Gv~~v~i~~~ 194 (398)
=.+.|.++|.+.+-+ |.|+ |.+.--.-+.+.+|+..+ ...-+++.|.++ ++..+.+|++.+.+.+-
T Consensus 22 e~~~~l~~GadwlHlDVMDg~FV-----pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E 96 (224)
T KOG3111|consen 22 ECKKMLDAGADWLHLDVMDGHFV-----PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYE 96 (224)
T ss_pred HHHHHHHcCCCeEEEeeeccccc-----CCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence 456788999997766 3444 333322346777775422 344566777655 68888999998777543
Q ss_pred CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc---
Q 015894 195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI--- 271 (398)
Q Consensus 195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--- 271 (398)
+ -+...++++++|+.|..+...|- | -++.+.+...+. .+|.+ |.=|+
T Consensus 97 ~----------------~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~-----~~D~v-LvMtVePG 146 (224)
T KOG3111|consen 97 A----------------TQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAE-----HVDMV-LVMTVEPG 146 (224)
T ss_pred e----------------ccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhc-----cccEE-EEEEecCC
Confidence 2 22345778999999999875444 2 246677666654 22221 11122
Q ss_pred --CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHH
Q 015894 272 --GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYM 349 (398)
Q Consensus 272 --G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~ 349 (398)
|.-.-+++-.-|+.+|+++|.+.|++ |-|++..|+-.+.+|||+.+=+.-.= -|-.+-.+++..
T Consensus 147 FGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsav----------f~a~d~~~vi~~ 212 (224)
T KOG3111|consen 147 FGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAV----------FGAADPSDVISL 212 (224)
T ss_pred CchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEeccee----------ecCCCHHHHHHH
Confidence 22223556667899999999877776 67999999999999999966332221 223455677766
Q ss_pred HHh
Q 015894 350 LNG 352 (398)
Q Consensus 350 L~~ 352 (398)
|+.
T Consensus 213 lr~ 215 (224)
T KOG3111|consen 213 LRN 215 (224)
T ss_pred HHH
Confidence 654
No 122
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.79 E-value=0.18 Score=48.00 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHHH
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAVA 183 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~~ 183 (398)
-..+.++..++++.-.+.|+..+-+- |.|+| ...+.++ -.++++.+.+ | + ....+.|++
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~ 85 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLK-GSDVKVCTVIGFPLGANTTAVKAFEAKDAIA 85 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhC-CCCCeEEEEecccCCCChHHHHHHHHHHHHH
Confidence 36788888999999999999887774 33332 1122222 1245665544 2 2 135678899
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
.|+++|.+.+..+-.. - -..++..+.+..+.+.+ .+..+-+-+. ....+.+.+.++++.+.++|+|
T Consensus 86 ~GA~EiD~Vin~~~~~----~-g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 86 NGADEIDMVINIGALK----S-GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred cCCceEeeeccHHHhc----C-CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCHHHHHHHHHHHHHhCCC
Confidence 9999999988766431 1 13556666665555544 3544443232 2235678889999999999999
Q ss_pred EEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 264 EISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 264 ~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
.|--.-+. |..+|+.++.+.+.+...+ .+..==-. .....++.-+++||++|-+|
T Consensus 152 fIKTsTG~~~~gat~~~v~~m~~~~~~~~-----~IKasGGI-rt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 152 FVKTSTGFSTGGATVEDVKLMRETVGPRV-----GVKASGGI-RTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhCCCc-----eEEeeCCc-CCHHHHHHHHHcCcceEccC
Confidence 55554443 4466777776665554333 22221100 01466777889999998776
No 123
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.78 E-value=0.27 Score=48.72 Aligned_cols=190 Identities=18% Similarity=0.176 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---c--CCcEEEEe---CCHhhHHHHHHcCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---E--GARFPVLT---PNLKGFEAAVAAGA 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~--~~~l~~l~---~n~~~ie~a~~~Gv 186 (398)
.++.+....++++-.+.+-+.|=-.+...-++. ...+.+...++.. . ++.+.... .+.+.+.+|+++|.
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf 101 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGF 101 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 467888889999999999998776554332221 1233444444421 2 33333332 46788999999999
Q ss_pred CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHH
Q 015894 187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLY 258 (398)
Q Consensus 187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~ 258 (398)
..|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. ..++|+...+++ .
T Consensus 102 tSVMiDgS----------~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~ 168 (288)
T TIGR00167 102 SSVMIDGS----------HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---K 168 (288)
T ss_pred CEEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---h
Confidence 98887333 13568999999999999999999999888876554442 146777655554 3
Q ss_pred hCCCCEEEE--ccCcCcC--CHH-HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 259 DMGCSEISL--GDTIGVG--TPG-TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 259 ~~Gad~I~L--~DT~G~~--~P~-~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+.|+|.+.+ .-.=|.- .|. ==.++++.+++.++ +||.+|+= -|+.-.....|++.|+.-|+.
T Consensus 169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 235 (288)
T TIGR00167 169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHGG--SGIPDEEIKKAISLGVVKVNI 235 (288)
T ss_pred ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEc
Confidence 568886543 3333333 243 22356777777764 57888875 477778899999999876643
No 124
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.76 E-value=0.34 Score=48.97 Aligned_cols=222 Identities=15% Similarity=0.076 Sum_probs=146.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc---CCcEEE-Ee-CCHhhHHHHHHcCCCE
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE---GARFPV-LT-PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~---~~~l~~-l~-~n~~~ie~a~~~Gv~~ 188 (398)
+.++.++.++-|+...+.|.....++.....+. .+.+++.+.++.+. +.++.+ +. -+.+.++...++|++.
T Consensus 82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~----~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ 157 (335)
T COG0502 82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGPG----RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDR 157 (335)
T ss_pred hcCCHHHHHHHHHHHHHcCCceEEEEEeccCCC----ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhh
Confidence 467899999999999999976666654332111 45677777777554 333322 22 2567889999999998
Q ss_pred EEEeccCchH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEE
Q 015894 189 VAIFASASES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEIS 266 (398)
Q Consensus 189 v~i~~~~Sd~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~ 266 (398)
+.--.-+|+- |.+-....|.++-+ +.++.+|+.|+++..... +|..- +.++-++.+..+.+.. ++.|-
T Consensus 158 ynhNLeTs~~~y~~I~tt~t~edR~----~tl~~vk~~Gi~vcsGgI--~GlGE----s~eDri~~l~~L~~l~~pdsVP 227 (335)
T COG0502 158 YNHNLETSPEFYENIITTRTYEDRL----NTLENVREAGIEVCSGGI--VGLGE----TVEDRAELLLELANLPTPDSVP 227 (335)
T ss_pred eecccccCHHHHcccCCCCCHHHHH----HHHHHHHHcCCccccceE--ecCCC----CHHHHHHHHHHHHhCCCCCeee
Confidence 8764444444 44444455666555 556889999999874444 44321 4566677777888888 77764
Q ss_pred E------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 267 L------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 267 L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
| ++| .=-+.|.+.-..|+..|-.+|...|-+- =-.-.+.-....-|+.+||+.|=++. .+.-
T Consensus 228 In~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~lt------ 299 (335)
T COG0502 228 INFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYLT------ 299 (335)
T ss_pred eeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEee------
Confidence 3 222 3356788889999999988997444332 22233334446677889999776665 2222
Q ss_pred CCCCccHHHHHHHHHhCCCCCc
Q 015894 337 ASGNVATEDVVYMLNGLGVRTN 358 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~Gi~t~ 358 (398)
+.|...|+-...++.+|....
T Consensus 300 -t~~~~~e~D~~~l~~lgl~~e 320 (335)
T COG0502 300 -TPGPDEDKDLELLKDLGLEPE 320 (335)
T ss_pred -cCCCCchhHHHHHHHcCCCcc
Confidence 335888999899998887544
No 125
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.76 E-value=0.024 Score=53.71 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=110.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hcc-CCcEEEEe-C---CHhhHHHHHHc
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVE-GARFPVLT-P---NLKGFEAAVAA 184 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~-~~~l~~l~-~---n~~~ie~a~~~ 184 (398)
+...+.++..++++...+.|++.+-+... +++.. +. .+..... ++. .+.+.... . -...++.+++.
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~~~----~~~~~-~~-~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALTKG----IARAY-GR-EYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeChH----HHHhc-cc-ccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 33456777788999999999999988632 11110 00 0000000 000 00000000 0 12358899999
Q ss_pred CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|++.|.+.+...+. +..+.++.+.++++.|++.|+++.+... ..|.......+++.+...++.+.++|+|.
T Consensus 89 Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~-~~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMY-PRGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 99988554432211 2457788899999999999998764332 11111111234566666688888999999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe---CCccchHHHHHHHHHHhCCCEEeec
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF---HDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~---Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
|.+.=|. .+..+ +.+.+..|. |+-+=+ ..|..-.+.|+-.++++||+.|-..
T Consensus 160 Ik~~~~~---~~~~~----~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 160 VKTKYTG---DAESF----KEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred EEecCCC---CHHHH----HHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 9985332 33444 444444442 343322 3566668899999999999977443
No 126
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.67 E-value=0.3 Score=48.34 Aligned_cols=189 Identities=15% Similarity=0.187 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.++.+....++++-.+.+.+.|=-.++..-++. ..+.+...++.. . ++.+.... .+.+.+++|+++|...
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftS 100 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRS 100 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 578888888999999999998766554332221 223333444421 2 33333332 3577899999999998
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~ 260 (398)
|.+=.| ..+.+++++.-++++++|+..|+.|++.|-..-|.++. ..++|+...++++ +.
T Consensus 101 VM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T 167 (284)
T PRK09195 101 VMIDGS----------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---AT 167 (284)
T ss_pred EEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence 877332 23578999999999999999999999888776444432 1368877777655 56
Q ss_pred CCCEE--EEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 261 GCSEI--SLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 261 Gad~I--~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
|+|.+ .+.-.=|.- .|.==.++++.+++..+ +||.+|+=. |..-.....|++.|+.-|+.
T Consensus 168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGgS--G~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 168 GIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGAS--GLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence 88864 333333442 24333456777777764 588888754 67788899999999986654
No 127
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=96.65 E-value=0.34 Score=49.30 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v~ 190 (398)
.++.++..++++.+.+.|+..|.++. ..|-.. .|..++++.+++. +..+.+.+. +.+-++...+.|++.|.
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~il~~~~~~-g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~ 119 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSG-GEPLLR---KDLEELVAHAREL-GLYTNLITSGVGLTEARLAALKDAGLDHIQ 119 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEC-CccCCc---hhHHHHHHHHHHc-CCcEEEECCCccCCHHHHHHHHHcCCCEEE
Confidence 57889999999999999998877753 222111 2445555555532 344333332 34557777889999999
Q ss_pred EeccCc--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 191 IFASAS--ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 191 i~~~~S--d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
|.+... +.|-+ ..+.. ..++.+.+.++.+++.|+.|.+... + .+.+.+++.++++.+.+.|++.+.+.
T Consensus 120 iSldg~~~e~~d~-irg~~--g~f~~~~~~i~~l~~~g~~v~i~~v--v-----~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 120 LSFQDSDPELNDR-LAGTK--GAFAKKLAVARLVKAHGYPLTLNAV--I-----HRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred EEecCCCHHHHHH-HcCCC--chHHHHHHHHHHHHHCCCceEEEEE--e-----ecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 876653 23321 11211 2456666778889999998764333 2 34567888999999999999988764
No 128
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.64 E-value=0.19 Score=47.36 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccC-CcEEEEe-CCHhhHHHHHHcCCCEEEEe
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEG-ARFPVLT-PNLKGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~-~~l~~l~-~n~~~ie~a~~~Gv~~v~i~ 192 (398)
.+.++-+++++.|.+.|++.||+++- .+ +..+.++.++ +.++ ..+.+=+ .+.++++.++++|++.++.-
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~-~~-------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLN-SP-------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 37888899999999999999999962 22 2334454444 4553 4444333 57889999999999988863
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG 272 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G 272 (398)
. .+ .+++++++..|..+-. | -.+++++ ..+.++|+|.|.+=-+ +
T Consensus 91 ~--~~------------------~~v~~~~~~~~~~~~~------G-----~~t~~E~----~~A~~~Gad~vk~Fpa-~ 134 (206)
T PRK09140 91 N--TD------------------PEVIRRAVALGMVVMP------G-----VATPTEA----FAALRAGAQALKLFPA-S 134 (206)
T ss_pred C--CC------------------HHHHHHHHHCCCcEEc------c-----cCCHHHH----HHHHHcCCCEEEECCC-C
Confidence 2 11 2556777888887642 2 2356553 3456799999876221 2
Q ss_pred cCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 273 VGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 273 ~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.+.|.. ++.++..+| .+|+-.=+ |.-..|.-.-+++|++.|=
T Consensus 135 ~~G~~~----l~~l~~~~~~~ipvvaiG----GI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 135 QLGPAG----IKALRAVLPPDVPVFAVG----GVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred CCCHHH----HHHHHhhcCCCCeEEEEC----CCCHHHHHHHHHCCCeEEE
Confidence 233544 444555554 44554432 6777999999999999764
No 129
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.62 E-value=0.66 Score=45.42 Aligned_cols=180 Identities=13% Similarity=0.131 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCccc-CCC-CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVP-QLA-DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAI 191 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p-~~~-D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i 191 (398)
+.++.+++|+.|.++|+..+-.+++- |+--| .+. -.++-++.+++. .+..+..=..+...++.+.+. ++.+.|
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~k-pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kI 116 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFK-PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQI 116 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeec-CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEE
Confidence 78889999999999999999999763 11111 111 123334444432 233333333466777777777 888887
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
-..... . .+..+++.+.|..|. +. .+. .+++.+...++.+...|-+.+.|+..
T Consensus 117 ga~~~~----------n-------~~LL~~~a~~gkPV~--lk-------~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r 170 (266)
T PRK13398 117 GSRNMQ----------N-------FELLKEVGKTKKPIL--LK-------RGMSATLEEWLYAAEYIMSEGNENVVLCER 170 (266)
T ss_pred Cccccc----------C-------HHHHHHHhcCCCcEE--Ee-------CCCCCCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 533211 1 134455567788875 33 122 37899999999999999987777764
Q ss_pred cC---cCCH-HHHHH-HHHHHHhhCCCCeEEE-EeCCc--cchHHHHHHHHHHhCCC--EEeecc
Q 015894 271 IG---VGTP-GTVIP-MLEAVLDAVPVDKLAV-HFHDT--YGQALSNILASLQMGIS--TVDSSV 325 (398)
Q Consensus 271 ~G---~~~P-~~v~~-lv~~l~~~~p~~~l~~-H~Hnd--~GlA~ANalaAl~aGa~--~VD~Sv 325 (398)
-+ ...| ..+.- .+..+++.++ .||.+ =.|-+ .-+...-+++|+.+||+ +|+.-+
T Consensus 171 G~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 171 GIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 21 1233 33322 3344444443 57888 45543 23557889999999999 666443
No 130
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=96.58 E-value=0.46 Score=45.26 Aligned_cols=189 Identities=17% Similarity=0.124 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C---------------C-----H----h
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P---------------N-----L----K 176 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------n-----~----~ 176 (398)
.+.++.+.++|++.||+..+.. .+.+++...++. .+.+++++. + . . +
T Consensus 17 ~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T TIGR03234 17 LERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVAL 88 (254)
T ss_pred HHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHH
Confidence 4566677799999999975321 245555555542 345555442 1 0 0 1
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
-++.|.+.|++.|++..+..+ .+.+ .+...+.+++++++|++.|+.+...-..-+.+|...-.+++...+
T Consensus 89 ~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~ 162 (254)
T TIGR03234 89 AIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALA 162 (254)
T ss_pred HHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHH
Confidence 245567789999887644211 0112 234456678888999999987652211000011111235555555
Q ss_pred HHHHHHhCCCCEE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 253 VSKQLYDMGCSEI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 253 ~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+++ +.+-+.+ ..-|+.=...- +...++++.+. + --.++|..|+.|. .
T Consensus 163 li~---~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~---~-~i~~vHi~D~~~~-----------------------~- 211 (254)
T TIGR03234 163 VID---DVGRENLKLQYDLYHMQRMGGDLARTLAAYA---A-HIGHVQIADNPGR-----------------------H- 211 (254)
T ss_pred HHH---HhCCCCEeEeeehhhhhhhCCCHHHHHHHhh---c-cEeEEEeCCCCCC-----------------------C-
Confidence 554 3444433 34455322211 12233333332 2 2478888875320 0
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCCCcc
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLGVRTNV 359 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~Gi~t~i 359 (398)
.+ +.|..+..+++..|++.|++--+
T Consensus 212 ---~~-G~G~id~~~il~~L~~~gy~g~~ 236 (254)
T TIGR03234 212 ---EP-GTGEINYRFLFAVLDRLGYDGWV 236 (254)
T ss_pred ---CC-CCCccCHHHHHHHHHHCCCCceE
Confidence 12 36899999999999998876333
No 131
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.57 E-value=0.87 Score=45.01 Aligned_cols=168 Identities=17% Similarity=0.212 Sum_probs=93.0
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHH---HHHhcc---CCcEEE
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMA---AIQNVE---GARFPV 170 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~---~i~~~~---~~~l~~ 170 (398)
+-|+-+|+ |-..--|..++.+..++-+..+.+.|.+.|++|.-.. |..-+ ....+|+.+ .++.+. ++.+++
T Consensus 18 mGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~-v~~eeE~~Rv~pvI~~l~~~~~~~ISI 95 (282)
T PRK11613 18 MGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-VSVEEELDRVIPVVEAIAQRFEVWISV 95 (282)
T ss_pred EEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 44555554 3333333347899999999999999999999996443 32111 112233222 333222 343433
Q ss_pred EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCC--
Q 015894 171 LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVP-- 246 (398)
Q Consensus 171 l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~-- 246 (398)
=+.+.+-++.|+++|++.|.=..+.++ ++ +.+.+++.|..+. ++..-|.|... +..
T Consensus 96 DT~~~~va~~AL~~GadiINDI~g~~d-----------~~-------~~~~~a~~~~~vV--lmh~~g~p~~~~~~~~y~ 155 (282)
T PRK11613 96 DTSKPEVIRESAKAGAHIINDIRSLSE-----------PG-------ALEAAAETGLPVC--LMHMQGNPKTMQEAPKYD 155 (282)
T ss_pred ECCCHHHHHHHHHcCCCEEEECCCCCC-----------HH-------HHHHHHHcCCCEE--EEcCCCCCCccccCCCcc
Confidence 345777889999999998754323221 11 2233466776664 55443433221 111
Q ss_pred ------HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHH
Q 015894 247 ------PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVL 287 (398)
Q Consensus 247 ------~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~ 287 (398)
..++.+.++.+.++|++ .|.+==-.|.. ++.+-.++++.+.
T Consensus 156 dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 156 DVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHH
Confidence 14566677788889986 44432223432 2455666666654
No 132
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.57 E-value=0.23 Score=46.78 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchH
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES 198 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~ 198 (398)
++..++++.+.++|.|.|++|.-..-. .....+++..+|+..+..+...--+...+ ..++|-+-+..=+|-
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt----~~~~~~~v~~ik~~~~lPvilfp~~~~~i----~~~aD~~~~~sllns- 81 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIV----ESNLDQTVKKIKKITNLPVILFPGNVNGL----SRYADAVFFMSLLNS- 81 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCC----HHHHHHHHHHHHhhcCCCEEEECCCcccc----CcCCCEEEEEEeecC-
Confidence 555678999999999999998422110 01123344555543233332222244442 345776554321111
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE--EEEEeeeecCCC--------CCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 199 FSKSNINCTIEDSLIRYRDVALAARELSIPV--RGYLSCVVGCPV--------EGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v--~~~l~~~fg~~~--------~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
.+++..+..-.+.+-..|+.|.++ ++|+..--++-. .-+.+++....++..+..+|.+.|+|.
T Consensus 82 -------~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le 154 (205)
T TIGR01769 82 -------ADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLE 154 (205)
T ss_pred -------CCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 122233333334444558888864 566553211100 012577888888888888999999999
Q ss_pred cCcCcCCHHHHHHHHHHHHhhCCCCe--EEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 DTIGVGTPGTVIPMLEAVLDAVPVDK--LAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 DT~G~~~P~~v~~lv~~l~~~~p~~~--l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|..|...|.. .++++.+++... .| +++-.++- ..+..++++||+.|
T Consensus 155 ~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~vGGGIrs~-----e~a~~l~~~GAD~V 202 (205)
T TIGR01769 155 AGSGASYPVN-PETISLVKKASG-IPLIVGGGIRSP-----EIAYEIVLAGADAI 202 (205)
T ss_pred cCCCCCCCCC-HHHHHHHHHhhC-CCEEEeCCCCCH-----HHHHHHHHcCCCEE
Confidence 9988864433 666777776652 23 33332221 33444557888866
No 133
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=96.55 E-value=0.18 Score=51.73 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=137.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC------------CHh-h
Q 015894 112 EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP------------NLK-G 177 (398)
Q Consensus 112 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~------------n~~-~ 177 (398)
.+..++.++..+.++.+.+.|+..|-+-+..+|...+. -.++.++.+++ .|++.+-++.+ ..+ .
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~ 163 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV 163 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence 45679999999999999999999999987777653321 13445556663 56665555542 122 3
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhh------hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKS------NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~------~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
+++..++|.+.+-.+- .+++.+. .-.++.++= .++.+.|.++|++..++.++-. .+++.+.-..+
T Consensus 164 l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~w----le~~~~Ah~lGI~~tatml~Gh---~E~~ed~~~hl 234 (370)
T COG1060 164 LKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEW----LEIHERAHRLGIPTTATMLLGH---VETREDRIDHL 234 (370)
T ss_pred HHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeEEEe---cCCHHHHHHHH
Confidence 7888899998654321 1222211 223344433 3567899999999887666422 12222222222
Q ss_pred HHHHHHH-hCC-CCEEEE-----ccC---cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 252 YVSKQLY-DMG-CSEISL-----GDT---IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 252 ~~a~~l~-~~G-ad~I~L-----~DT---~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
.-++.+. ++| ...|.+ +.+ ... .++.++...++..|-.++. .+...-=-.+-+++.-+.+|+.+||
T Consensus 235 ~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w~~~g~~~~~~~l~~Ga 313 (370)
T COG1060 235 EHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASWLRDGVILAQAALLSGA 313 (370)
T ss_pred HHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcccccchHHHHHHHHhCc
Confidence 3333443 344 433322 233 112 3445555566655554542 2333333455666777889999999
Q ss_pred CEEeeccccCCCCCCCCCCCC-----CccHHHHHHHHHhCCCCC
Q 015894 319 STVDSSVSGLGGCPYAKGASG-----NVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 319 ~~VD~Sv~GlGecp~a~graG-----Na~lE~vv~~L~~~Gi~t 357 (398)
+-+.++... ++-.- .+| +.+.|+++..++..|+.+
T Consensus 314 nD~ggt~~~--E~v~~--~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 314 NDLGGTGYE--EKVNP--AAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred ccCcCCCcc--ccccc--ccccccCCCCCHHHHHHHHHHcCCCe
Confidence 988888776 63221 344 888999999999988743
No 134
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=96.54 E-value=0.38 Score=46.08 Aligned_cols=186 Identities=11% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C---------------C-----Hh----
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P---------------N-----LK---- 176 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------n-----~~---- 176 (398)
.+.++.+.++|++.||++.+. ..+.+++.+.++. .+++++... + . .+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAA 89 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHH
Confidence 456888999999999997532 1356777766653 234443211 0 0 11
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
-++.|.+.|++.|.++.+..+ -+.+. +...+.+.++.++|++.|+.+...-...+..+...-.+++...+
T Consensus 90 ~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~ 163 (258)
T PRK09997 90 AIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALK 163 (258)
T ss_pred HHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHH
Confidence 245667789999887643210 11222 34456667888899999987642211001011111234555555
Q ss_pred HHHHHHhCCCCEE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 253 VSKQLYDMGCSEI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 253 ~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+++ +.+.+.+ -.-|+.=.... ..+.+.++.+ ++--.++|.+|..+- +
T Consensus 164 ll~---~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~----~~ri~~vHikD~~~~-----------------------~- 212 (258)
T PRK09997 164 LID---DVGCCNLKIQYDIYHMQRMEGELTNTMTQW----ADKIGHLQIADNPHR-----------------------G- 212 (258)
T ss_pred HHH---HhCCCCEEEEeEHHHhhhcCCcHHHHHHHh----hCcccEEEeCCCCCC-----------------------C-
Confidence 554 4444433 34465322211 1233333333 333468899985320 1
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
.+ +.|..+...++..|++.|++
T Consensus 213 ---~~-G~G~id~~~i~~aL~~~Gy~ 234 (258)
T PRK09997 213 ---EP-GTGEINYDYLFKVIENSDYN 234 (258)
T ss_pred ---CC-CCCcCCHHHHHHHHHHhCCC
Confidence 12 36899999999999998875
No 135
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=96.52 E-value=0.43 Score=47.94 Aligned_cols=144 Identities=21% Similarity=0.162 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCCH----hhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPNL----KGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n~----~~ie~a~~~Gv~~v 189 (398)
.++.++..++++...+.||+-|-++-.- |-+ .|..++.+.+++. +..-.+++.|- +-.+...++|+++|
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGE-----PllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~rV 115 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGGE-----PLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAGLDRV 115 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCCC-----chhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHHHHcCCcEE
Confidence 5899999999999999999999997531 222 4677777777755 45556777763 34566788999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EIS 266 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~ 266 (398)
.|...+=|......+ |....++++.+-|+.|.+.|+. |-. .++. .. ..+.+++.++++.+.+.|+. -|-
T Consensus 116 NVSLDsld~e~f~~I--T~~~~~~~Vl~GI~~A~~~Gl~pVKl--N~Vv---~k-gvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 116 NVSLDSLDPEKFRKI--TGRDRLDRVLEGIDAAVEAGLTPVKL--NTVL---MK-GVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred EeecccCCHHHHHHH--hCCCcHHHHHHHHHHHHHcCCCceEE--EEEE---ec-CCCHHHHHHHHHHHhhcCCceEEEE
Confidence 997554443322222 2223478888899999999996 653 3222 11 15788999999999999975 477
Q ss_pred EccCcC
Q 015894 267 LGDTIG 272 (398)
Q Consensus 267 L~DT~G 272 (398)
+.|+-.
T Consensus 188 ~m~~g~ 193 (322)
T COG2896 188 LMPLGE 193 (322)
T ss_pred EeecCc
Confidence 777653
No 136
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=96.49 E-value=0.22 Score=49.82 Aligned_cols=137 Identities=14% Similarity=0.057 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCCH----hhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPNL----KGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n~----~~ie~a~~~Gv~~v 189 (398)
.++.++..++++.+.+.|+..|-++. ..| -+ .|..++++.+++.++..-..++.|- +-++...++|++.|
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG-GEP----llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v 118 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG-GEP----LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRL 118 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC-cCC----CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeE
Confidence 58999999999999999999998864 122 11 2455666666655554333444441 33566778999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
.|.+...+......++ ....++++.+.++.+++.|+ .+.++.. + .+ ..+.+++.++++.+.+.|++.
T Consensus 119 ~ISlDs~~~e~~~~i~--~~g~~~~vl~~i~~~~~~Gi~~v~in~v--~-~~---g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 119 NISLDTLRPELFAALT--RNGRLERVIAGIDAAKAAGFERIKLNAV--I-LR---GQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred EEEeccCCHHHhhhhc--CCCCHHHHHHHHHHHHHcCCCceEEEEE--E-EC---CCCHHHHHHHHHHHHhcCCeE
Confidence 9976554322222222 22456777788899999998 6654332 2 11 245688999999999999975
No 137
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=96.49 E-value=0.82 Score=45.15 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE--GARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~--~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
.+..+....++++-.+.+-+.|=-.++..-++.+ .+.+...++. .. .+.+.... .+.+.++.|++.|++.
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ts 100 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTS 100 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 5788888889999999999987665543322221 2222223321 12 33333332 3567889999999999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga 262 (398)
|.+=.+ ..+.++.++..++++++|++.|..|.+.+-..-+..+. +-++++...+++ .+.|+
T Consensus 101 Vm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~---~~tg~ 167 (281)
T PRK06806 101 VMFDGS----------HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFA---EETDV 167 (281)
T ss_pred EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHH---HhhCC
Confidence 888433 23577899999999999999999998766653222221 135666655443 34799
Q ss_pred CEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 263 SEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 263 d~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
|.+.+ .=..|.- .|.-=.++++.+++..+ +||..|+ .-|.-..|...++++|++-|++.-
T Consensus 168 DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 168 DALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred CEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEhH
Confidence 98877 5555533 12223346777777664 5788776 347778999999999999887643
No 138
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.48 E-value=0.25 Score=46.41 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=106.9
Q ss_pred hhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE
Q 015894 89 KLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF 168 (398)
Q Consensus 89 ~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l 168 (398)
|+...+|+.+.+...|+ -|+-. =+..+..++++.+.+.|+..++++.+ +.++.++...+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~iPi 63 (219)
T cd04729 2 KLLEQLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVDLPI 63 (219)
T ss_pred cHHHHhcCCeEEEccCC-CCCCc----CcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCCCCE
Confidence 45566788888887776 33222 24567789999999999999986432 22334443233333
Q ss_pred EE------------EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEee
Q 015894 169 PV------------LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSC 235 (398)
Q Consensus 169 ~~------------l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~ 235 (398)
.. +.+....++.++++|++.|-+-.+... .+. -+.+.++++.+++.| +.+.+ .
T Consensus 64 l~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~---------~p~--~~~~~~~i~~~~~~g~~~iiv--~- 129 (219)
T cd04729 64 IGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP---------RPD--GETLAELIKRIHEEYNCLLMA--D- 129 (219)
T ss_pred EEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC---------CCC--CcCHHHHHHHHHHHhCCeEEE--E-
Confidence 21 112344788999999996655332110 000 013456778888888 54432 1
Q ss_pred eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHH
Q 015894 236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNI 310 (398)
Q Consensus 236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANa 310 (398)
-.+++. +..+.++|++.|.+. +..+.. ......++++.+++.+ ++|+-. .-|.. ..++
T Consensus 130 --------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia----~GGI~~~~~~ 192 (219)
T cd04729 130 --------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIA----EGRINSPEQA 192 (219)
T ss_pred --------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEE----eCCCCCHHHH
Confidence 124444 356778999988542 222211 1112236777777765 244443 45663 4788
Q ss_pred HHHHHhCCCEE
Q 015894 311 LASLQMGISTV 321 (398)
Q Consensus 311 laAl~aGa~~V 321 (398)
..++++||+.|
T Consensus 193 ~~~l~~GadgV 203 (219)
T cd04729 193 AKALELGADAV 203 (219)
T ss_pred HHHHHCCCCEE
Confidence 88889998755
No 139
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.43 E-value=0.12 Score=48.92 Aligned_cols=175 Identities=23% Similarity=0.238 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEecc
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFAS 194 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~ 194 (398)
.|+.+...+++++-...|.++|++. +|++ +.+.++...+..+++-.-..+.+-.++++|++.|.|--.
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp~-LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf 90 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIA-----------ADPE-LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNF 90 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEec-----------CCHH-HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecch
Confidence 4999999999999999999999995 3554 566777777776666556677888999999998877433
Q ss_pred CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894 195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274 (398)
Q Consensus 195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~ 274 (398)
|.|-..+...+.+|.|+.. +..|++=-.+. ++-+ -| .-.+.+.=.+++..+.+.|+|.|. |-|..
T Consensus 91 --DsFY~qGr~f~a~eVL~Lt----~~tR~LLP~~~--LsVT--VP--HiL~ld~Qv~LA~~L~~~GaDiIQ---TEGgt 155 (242)
T PF04481_consen 91 --DSFYAQGRRFSAEEVLALT----RETRSLLPDIT--LSVT--VP--HILPLDQQVQLAEDLVKAGADIIQ---TEGGT 155 (242)
T ss_pred --HHHHhcCCeecHHHHHHHH----HHHHHhCCCCc--eEEe--cC--ccccHHHHHHHHHHHHHhCCcEEE---cCCCC
Confidence 5565666667777776544 55555422222 2211 13 235678888999999999999985 22222
Q ss_pred C--H---------HHHHHHHHHHH---hhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 275 T--P---------GTVIPMLEAVL---DAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 275 ~--P---------~~v~~lv~~l~---~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+ | +.....+.... +.. .+|+ =.--|+.--.+=.|+.+||..|
T Consensus 156 ss~p~~~g~lglIekaapTLAaay~ISr~v-~iPV----lcASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 156 SSKPTSPGILGLIEKAAPTLAAAYAISRAV-SIPV----LCASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred CCCCCCcchHHHHHHHhHHHHHHHHHHhcc-CCce----EeccCcchhhHHHHHHcCCccc
Confidence 1 1 11111111111 111 1222 2456888888888889998754
No 140
>PRK06267 hypothetical protein; Provisional
Probab=96.39 E-value=0.6 Score=47.37 Aligned_cols=214 Identities=10% Similarity=0.059 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-Ee-CCHhhHHHHHHcCCCEEEEe
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-LT-PNLKGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~-~n~~~ie~a~~~Gv~~v~i~ 192 (398)
..+.++.++-++.+.+.|++.+=+...... ...+.+++.+.++..++..+.+ +. .+..........|+. ..+-
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv~-g~~E 136 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGVV-GAVE 136 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCce-eeee
Confidence 568999999999999999985433221111 0122344555555444432111 11 123332222233432 1222
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE------
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS------ 266 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~------ 266 (398)
..-.+.+.+..-+.+.++. .+.++.+++.|+.+.+.++ +|. .. +.+...+.++.+.+++++.+.
T Consensus 137 T~~~~~~~~i~~~~s~ed~----~~~l~~ak~aGi~v~~g~I--iGl-gE---t~ed~~~~l~~l~~l~~d~v~~~~L~P 206 (350)
T PRK06267 137 TVNPKLHREICPGKPLDKI----KEMLLKAKDLGLKTGITII--LGL-GE---TEDDIEKLLNLIEELDLDRITFYSLNP 206 (350)
T ss_pred cCCHHHHHhhCCCCCHHHH----HHHHHHHHHcCCeeeeeEE--EeC-CC---CHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence 2222233333224455544 4666799999999876555 552 22 367888889999999988653
Q ss_pred EccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCCCCCCCCC
Q 015894 267 LGDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPYAKGASGN 340 (398)
Q Consensus 267 L~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~a~graGN 340 (398)
.++| .-..+|.++.+++..+|-.+|...|-.=.--+.+..++ .++.+||+.| =-...+++- ..|+
T Consensus 207 ~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~ 277 (350)
T PRK06267 207 QKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGK 277 (350)
T ss_pred CCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCC
Confidence 3344 23466789999999999888975552111101111111 2456898877 234455555 6778
Q ss_pred ccHHHHHHHHHh
Q 015894 341 VATEDVVYMLNG 352 (398)
Q Consensus 341 a~lE~vv~~L~~ 352 (398)
..-+++-..=++
T Consensus 278 ~~~~~~~~~~~~ 289 (350)
T PRK06267 278 RVENEIRWTGRE 289 (350)
T ss_pred CHHHHHHHhhhh
Confidence 777777665343
No 141
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=96.37 E-value=0.43 Score=48.85 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v 189 (398)
.++.++..++++.+.+.|+..|-++. .. |.+ .|..++++.+++.++.....++.| .+.++...++|++.|
T Consensus 89 ~ls~eei~~~i~~~~~~Gv~~I~~tG-GE----Pllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~V 163 (373)
T PLN02951 89 LLSQDEIVRLAGLFVAAGVDKIRLTG-GE----PTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL 163 (373)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeE
Confidence 48899999999999999999988764 12 222 245566777776666653444444 245677788999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE--IS 266 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~--I~ 266 (398)
.|.+...+......+. ....++.+.+.++.+++.|+ .|.+++... + ..+.+++.++++.+.+.|++. |.
T Consensus 164 nISLDsl~~e~~~~it--r~~~~~~vl~~I~~a~~~G~~~vkin~vv~---~---g~N~~Ei~~li~~a~~~gi~vr~ie 235 (373)
T PLN02951 164 NISLDTLVPAKFEFLT--RRKGHDRVLESIDTAIELGYNPVKVNCVVM---R---GFNDDEICDFVELTRDKPINVRFIE 235 (373)
T ss_pred EEeeccCCHHHHHHHh--cCCCHHHHHHHHHHHHHcCCCcEEEEEEec---C---CCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 9876543221111221 11124666777888889997 455433321 1 145678899999998988653 44
Q ss_pred EccCcCcCC----HHHHHHHHHHHHhhCC
Q 015894 267 LGDTIGVGT----PGTVIPMLEAVLDAVP 291 (398)
Q Consensus 267 L~DT~G~~~----P~~v~~lv~~l~~~~p 291 (398)
+.-..|... .....++++.+.+.+|
T Consensus 236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred cccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 444433211 1235677777777665
No 142
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.34 E-value=0.71 Score=43.19 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
.+..+-.++++...+.|.+.|-+--. +.+.. .+. +.++.+++..++.+.+ +.++...++.+.++|++.|.+..
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~-~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~ 102 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSL-EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV 102 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCH-HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence 44556789999999999998866321 10000 122 3445555444444443 23566689999999999999865
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~ 273 (398)
..-+ .+.++++++.++..|+.+.+.+. +.+. ++++.+.|++.+.+-...|.
T Consensus 103 ~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e----~~~~~~~g~~~i~~t~~~~~ 153 (217)
T cd00331 103 AALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE----LERALALGAKIIGINNRDLK 153 (217)
T ss_pred ccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH----HHHHHHcCCCEEEEeCCCcc
Confidence 4211 14556778888889998743221 3333 45566789999988877777
Q ss_pred CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894 274 GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTV 321 (398)
Q Consensus 274 ~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V 321 (398)
..+..+ +++..+++.+| +.++-.= .|-. ..++...+++|++.|
T Consensus 154 ~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 154 TFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred ccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence 777666 66777777663 3343321 1222 367778888898855
No 143
>PRK09989 hypothetical protein; Provisional
Probab=96.32 E-value=0.3 Score=46.82 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-----------------C----Hh----
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-----------------N----LK---- 176 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----------------n----~~---- 176 (398)
.+.++.+.++|++.||+..+.. .+.+++.+.++. .+.++++++. . .+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDL 89 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHH
Confidence 4678889999999999965321 245566656552 2333333220 0 11
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
-++.|.+.|++.|+++.+..+. +.+ .+...+.++++.++|++.|+.+...-.-....+...-.+.+...+
T Consensus 90 ~i~~A~~lg~~~v~v~~g~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~ 163 (258)
T PRK09989 90 ALEYALALNCEQVHVMAGVVPA------GEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALA 163 (258)
T ss_pred HHHHHHHhCcCEEEECccCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHH
Confidence 2345567899988876542110 112 233567777888899999987642211000001000113333333
Q ss_pred HHHHHHhCCCCEE-EEccCcCcCCHH-HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 253 VSKQLYDMGCSEI-SLGDTIGVGTPG-TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 253 ~a~~l~~~Gad~I-~L~DT~G~~~P~-~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+ +.+.+.+.+ ..-|+.-...+. .+.++++....+ -.++|.+|..+ +
T Consensus 164 l---l~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r----i~hvHi~D~~~-------------------------~ 211 (258)
T PRK09989 164 I---VEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK----YAHVQIAGLPD-------------------------R 211 (258)
T ss_pred H---HHHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh----EEEEEECCCCC-------------------------C
Confidence 3 445555444 556775554442 344444443332 36788885211 1
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
+ .+ +.|..+...++.+|++.|++
T Consensus 212 ~--~p-G~G~id~~~i~~al~~~Gy~ 234 (258)
T PRK09989 212 H--EP-DDGEINYPWLFRLFDEVGYQ 234 (258)
T ss_pred C--CC-CCCCcCHHHHHHHHHHcCCC
Confidence 1 12 36789999999999998875
No 144
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=96.32 E-value=0.34 Score=48.46 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~ 190 (398)
.++.++. .+.+++.|+..|.++. ..|-.. .|..++++.++.. +.. ..++.| .+.++...+.|...|.
T Consensus 58 ~ls~ee~---~~~i~e~g~~~V~i~G-GEPLL~---pdl~eiv~~~~~~-g~~-v~l~TNG~ll~~~~~~l~~~~~~~i~ 128 (318)
T TIGR03470 58 RLSVEEC---LRAVDECGAPVVSIPG-GEPLLH---PEIDEIVRGLVAR-KKF-VYLCTNALLLEKKLDKFEPSPYLTFS 128 (318)
T ss_pred CCCHHHH---HHHHHHcCCCEEEEeC-cccccc---ccHHHHHHHHHHc-CCe-EEEecCceehHHHHHHHHhCCCcEEE
Confidence 3555554 4556678998887753 222111 2455666666532 232 344444 1345666677888777
Q ss_pred Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 015894 191 IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG- 268 (398)
Q Consensus 191 i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~- 268 (398)
|.+ +..+.|-+. ...+..++.+.+.++.+++.|+.|.+... + ....+++++.++++.+.+.|++.+.+.
T Consensus 129 VSLDG~~e~hd~~---~~~~g~f~~~l~~I~~l~~~G~~v~v~~t--v----~~~~n~~ei~~~~~~~~~lGv~~i~i~p 199 (318)
T TIGR03470 129 VHLDGLREHHDAS---VCREGVFDRAVEAIREAKARGFRVTTNTT--L----FNDTDPEEVAEFFDYLTDLGVDGMTISP 199 (318)
T ss_pred EEEecCchhhchh---hcCCCcHHHHHHHHHHHHHCCCcEEEEEE--E----eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 753 333444322 12234577777888999999998764333 2 123578999999999999999988773
Q ss_pred --------cCcCcCCHHHHHHHHHHHHhh
Q 015894 269 --------DTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 269 --------DT~G~~~P~~v~~lv~~l~~~ 289 (398)
|.--.+.+.+..++++.+.+.
T Consensus 200 ~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 200 GYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred CcccccccccccccCHHHHHHHHHHHHhh
Confidence 112245567777777776653
No 145
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.30 E-value=0.17 Score=52.25 Aligned_cols=166 Identities=18% Similarity=0.089 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCCHh-h-HHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPNLK-G-FEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n~~-~-ie~a~~~Gv~~v~ 190 (398)
.+.++-+++++.|...++..+|+|.+.--.+ -.++++.+++. ++..+.+- +.+.. - ++.+.++|++.+.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~------G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vT 255 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKKF------GLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVV 255 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHHh------CHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEE
Confidence 4677778899999888788999997431111 12445566644 55444332 22221 1 6788899999998
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-- 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-- 268 (398)
+.....+ +.+..+++.+|++|+.+.+..+ .|. ++.+.+ +.+ ..++|.|.+.
T Consensus 256 VH~ea~~---------------~ti~~ai~~akk~GikvgVD~l----np~---tp~e~i----~~l-~~~vD~Vllht~ 308 (391)
T PRK13307 256 ISGLAPI---------------STIEKAIHEAQKTGIYSILDML----NVE---DPVKLL----ESL-KVKPDVVELHRG 308 (391)
T ss_pred EeccCCH---------------HHHHHHHHHHHHcCCEEEEEEc----CCC---CHHHHH----HHh-hCCCCEEEEccc
Confidence 8765432 3456778899999988764222 121 223333 233 5688888666
Q ss_pred -cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 -DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 -DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|.-+... ..+.++.+++..++.+|.+= -|....|.-.++++||+++
T Consensus 309 vdp~~~~~---~~~kI~~ikk~~~~~~I~Vd----GGI~~eti~~l~~aGADiv 355 (391)
T PRK13307 309 IDEEGTEH---AWGNIKEIKKAGGKILVAVA----GGVRVENVEEALKAGADIL 355 (391)
T ss_pred cCCCcccc---hHHHHHHHHHhCCCCcEEEE----CCcCHHHHHHHHHcCCCEE
Confidence 3323311 22466777765444455553 4777888888999999965
No 146
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.29 E-value=0.85 Score=46.35 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=122.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCC---HH------HHHHHHH---hccCCcEEEEe---CC--H
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LAD---AK------DVMAAIQ---NVEGARFPVLT---PN--L 175 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D---~~------~v~~~i~---~~~~~~l~~l~---~n--~ 175 (398)
.+..+....++++-.+...+.|=-.+...-++.+. +.+ .. .+...++ +--++.+.... .+ .
T Consensus 28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~ 107 (350)
T PRK09197 28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLL 107 (350)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence 57888888999999999999877655432222110 111 00 0112222 11233433332 34 4
Q ss_pred hhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC-
Q 015894 176 KGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG- 243 (398)
Q Consensus 176 ~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~- 243 (398)
+.+++++++| ...|.+=. | ..+.+++++.-++++++|+..|+.|++.|-..-|.++..
T Consensus 108 ~~i~~ai~~g~~~v~~a~~~gftSVMiDg--S--------~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~ 177 (350)
T PRK09197 108 PWIDGLLDAGEKHFAAGGKPLFSSHMIDL--S--------EEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVD 177 (350)
T ss_pred HHHHHHHHhhHHHHHhcCCCCceeEEeeC--C--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCcc
Confidence 5566666666 67675422 2 235788999999999999999999998888765544321
Q ss_pred ---------CCCHHHHHHHHHHHH-hCCCCE--EEEccCcCcCC---HHHHHHHHHHHHhhC--------CCCeEEEEeC
Q 015894 244 ---------MVPPSKVAYVSKQLY-DMGCSE--ISLGDTIGVGT---PGTVIPMLEAVLDAV--------PVDKLAVHFH 300 (398)
Q Consensus 244 ---------r~~~~~l~~~a~~l~-~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l~~~~--------p~~~l~~H~H 300 (398)
-++|+...+++++.- ..|+|. |.+.-.=|.-. |.==.++++.+++.+ |++||.+|+=
T Consensus 178 ~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGg 257 (350)
T PRK09197 178 NSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGG 257 (350)
T ss_pred ccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCC
Confidence 378888777776431 123364 45555555543 333345566666655 2678888875
Q ss_pred CccchHHHHHHHHHHhCCCEEeec
Q 015894 301 DTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 301 nd~GlA~ANalaAl~aGa~~VD~S 324 (398)
. |..--....|++.|+.-|+..
T Consensus 258 S--Gipde~i~~ai~~GI~KINi~ 279 (350)
T PRK09197 258 S--GSTLEEIREAVSYGVVKMNID 279 (350)
T ss_pred C--CCCHHHHHHHHHCCCeeEEeC
Confidence 4 778888999999999866543
No 147
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.27 E-value=0.64 Score=44.31 Aligned_cols=175 Identities=16% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCCH-hhHHHHHHcCCCEEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPNL-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n~-~~ie~a~~~Gv~~v~i 191 (398)
.+...-.+.++.|.+.|++.+=+-... ..++|++.--...++.+++. |+..+-+. +.+. .-++.+.++|++.|.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimD-g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMD-GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTF 94 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc-CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEE
Confidence 344455678888999999876663211 12334433333456666643 45555443 3343 4578889999999888
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE----EE
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI----SL 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I----~L 267 (398)
.....+ ..+.++++.+|++|..+.+.+. | .++.+.+.++.+ .-.+|.| .-
T Consensus 95 H~ea~~---------------~~~~~~l~~ik~~G~~~gval~-----p---~t~~e~l~~~l~---~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 95 HIEATE---------------DDPKAVARKIREAGMKVGVAIK-----P---KTPVEVLFPLID---TDLVDMVLVMTVE 148 (228)
T ss_pred eccCCc---------------hHHHHHHHHHHHCCCeEEEEEC-----C---CCCHHHHHHHHc---cchhhhHHhhhcc
Confidence 654332 1145678888999988765444 2 235666655431 0011211 11
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+...|...-....+.++.+++.++...|.+ |-|.-..|.-.+.++||+++
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 223344444455566778888776534443 66777889999999999977
No 148
>PRK01060 endonuclease IV; Provisional
Probab=96.26 E-value=1.2 Score=42.96 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-c--cCCc---EEEEeC--------CH-----------
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-V--EGAR---FPVLTP--------NL----------- 175 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~--~~~~---l~~l~~--------n~----------- 175 (398)
-.+.++.+.++|++.||+.......|.+..-+.++ ++.+++ + .+.+ +++..+ +.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~-~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELN-IEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHH-HHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 35678899999999999964321112111112222 223331 1 2333 332221 11
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH--HhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA--RELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a--k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
+.++.|.+.|++.|.+...... .....++.++++.+.++.+ ...| |...+....+.....-.+++.+.++
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~~~~~~~~l 164 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGRRFEELARI 164 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccCCHHHHHHH
Confidence 1245667789998777543210 0112334667666666654 2345 3333432111100011356666666
Q ss_pred HHHHHhCCCCE-E-EEccCcCc----CCH-HHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 254 SKQLYDMGCSE-I-SLGDTIGV----GTP-GTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 254 a~~l~~~Gad~-I-~L~DT~G~----~~P-~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
++.+ +-+. + ..-||.=. ..| ....++++.+.+..+ +--.++|+||+.+-. ..+.+
T Consensus 165 ~~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~d------ 227 (281)
T PRK01060 165 IDGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRKD------ 227 (281)
T ss_pred HHhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCCC------
Confidence 6544 2222 2 22344311 122 344467777766544 334788999987521 00111
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894 326 SGLGGCPYAKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 326 ~GlGecp~a~graGNa~lE~vv~~L~~~Gi 355 (398)
+...+ +.|+.+.+.++..|++.|+
T Consensus 228 -----~H~~~-G~G~id~~~~~~~L~~~~y 251 (281)
T PRK01060 228 -----RHANL-GEGTIGFDALRYIVHDPRF 251 (281)
T ss_pred -----cccCC-cCCcCCHHHHHHHHhCccc
Confidence 11122 3678999999999998665
No 149
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=96.23 E-value=0.11 Score=51.92 Aligned_cols=141 Identities=17% Similarity=0.231 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeCC----HhhHHHHHHcCCCE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTPN----LKGFEAAVAAGAKE 188 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~n----~~~ie~a~~~Gv~~ 188 (398)
.+.++.++.++.+.+.|+..|-+++-..+++ +. ..+..++++.+++ .|++++.++++. .+.++...++|.+.
T Consensus 91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv 169 (302)
T TIGR00510 91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV 169 (302)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchh
Confidence 4678889999999999999998886543322 11 1123455556654 477777777753 44677888999997
Q ss_pred EEEeccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 189 VAIFASASESFSKSNI--NCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
+...+-.++... ..+ +.+.++ ..++++.+++. |+.+...++.-|| + +.+++.+..+.+.+.|++.
T Consensus 170 ~~hnlEt~~~l~-~~vrr~~t~e~----~Le~l~~ak~~~pgi~~~TgiIVGlG---E---Teee~~etl~~Lrelg~d~ 238 (302)
T TIGR00510 170 YNHNLETVERLT-PFVRPGATYRW----SLKLLERAKEYLPNLPTKSGIMVGLG---E---TNEEIKQTLKDLRDHGVTM 238 (302)
T ss_pred hcccccchHHHH-HHhCCCCCHHH----HHHHHHHHHHhCCCCeecceEEEECC---C---CHHHHHHHHHHHHhcCCCE
Confidence 776554444322 223 334444 44667888887 7888777774442 2 5688888999999999999
Q ss_pred EEEc
Q 015894 265 ISLG 268 (398)
Q Consensus 265 I~L~ 268 (398)
+.+.
T Consensus 239 v~ig 242 (302)
T TIGR00510 239 VTLG 242 (302)
T ss_pred EEee
Confidence 8774
No 150
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.22 E-value=0.55 Score=46.48 Aligned_cols=211 Identities=13% Similarity=0.075 Sum_probs=125.3
Q ss_pred HHHHHhc---------CCCEEEEecCC--CCCcccC--CCCHHHHHHHHHhcc-CCcEEEEeC-----CH----hhHHHH
Q 015894 125 IKLLVSS---------GLAVVEATSFV--SPKWVPQ--LADAKDVMAAIQNVE-GARFPVLTP-----NL----KGFEAA 181 (398)
Q Consensus 125 a~~L~~a---------Gv~~IEvG~~~--~~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~-----n~----~~ie~a 181 (398)
++...++ |++.|=+++.. .....|. +-+.++++..++.+. -+.+.+++- +. +-++..
T Consensus 22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l 101 (285)
T TIGR02320 22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKL 101 (285)
T ss_pred HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHH
Confidence 4556677 99998887532 1122232 235677777776542 223333331 22 236677
Q ss_pred HHcCCCEEEEeccCchHHH---hhh---cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CCCCHHHHHHH
Q 015894 182 VAAGAKEVAIFASASESFS---KSN---INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GMVPPSKVAYV 253 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~---~~~---~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r~~~~~l~~~ 253 (398)
.++|+..|.|-+.+.+-.. ..+ .-.+.++..++++.+++... +..+. |..=. |+ .....+...+-
T Consensus 102 ~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~--IiART---Da~~~~~~~~eAi~R 174 (285)
T TIGR02320 102 ERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFM--IIARV---ESLILGKGMEDALKR 174 (285)
T ss_pred HHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeE--EEEec---ccccccCCHHHHHHH
Confidence 8899999999776533210 000 12367777777755544422 33322 11100 11 11246777788
Q ss_pred HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894 254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333 (398)
Q Consensus 254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~ 333 (398)
++...++|||.|.+. .+..++.++.++++.+...+|+.|+-+.. ...+.- ..-.--++|+++|-.....+
T Consensus 175 a~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~~~~~----- 244 (285)
T TIGR02320 175 AEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYANHLL----- 244 (285)
T ss_pred HHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEhHHHH-----
Confidence 999999999999997 34678999999999998878877775433 222322 23344468999876544433
Q ss_pred CCCCCCCccHHHHHHHHHhCCC
Q 015894 334 AKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 334 a~graGNa~lE~vv~~L~~~Gi 355 (398)
++-...+++++..+.+.|.
T Consensus 245 ---~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 245 ---RAAYAAMQQVAERILEHGR 263 (285)
T ss_pred ---HHHHHHHHHHHHHHHHcCC
Confidence 4556677777777776553
No 151
>PRK05481 lipoyl synthase; Provisional
Probab=96.21 E-value=0.22 Score=49.21 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeCC----HhhHHHHHHcCCC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTPN----LKGFEAAVAAGAK 187 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~n----~~~ie~a~~~Gv~ 187 (398)
.++.++.++.++.+.+.|++.|-+......+. |. .....++++.+++ .|++++..+.+. .+.+....++|++
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~-~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~ 157 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRDDL-PDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD 157 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCc-ccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence 48999999999999999999998875432110 10 1123455555664 567777777653 4678888899998
Q ss_pred EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
.+....-.|+.. ...++. ....+...++++.+++. |+.+...++.-| +. +.+...+..+.+.+.|.+.+
T Consensus 158 i~~~~~ets~~v-lk~m~r--~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-----GE-T~ed~~~tl~~lrel~~d~v 228 (289)
T PRK05481 158 VFNHNLETVPRL-YKRVRP--GADYERSLELLKRAKELHPGIPTKSGLMVGL-----GE-TDEEVLEVMDDLRAAGVDIL 228 (289)
T ss_pred eeeccccChHHH-HHHhCC--CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-----CC-CHHHHHHHHHHHHhcCCCEE
Confidence 887765555432 233432 12334455677899999 999987777433 22 56888888889999999887
Q ss_pred EE
Q 015894 266 SL 267 (398)
Q Consensus 266 ~L 267 (398)
.+
T Consensus 229 ~i 230 (289)
T PRK05481 229 TI 230 (289)
T ss_pred EE
Confidence 66
No 152
>PRK08005 epimerase; Validated
Probab=96.14 E-value=0.48 Score=44.87 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEE
Q 015894 119 VVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i 191 (398)
..-.+-++.|.++|++.+=+ |.|+ |++.=-...++.+++..+..+-+ ++.+. +-++..+++|++.|.+
T Consensus 13 ~~l~~el~~l~~~g~d~lHiDvMDG~FV-----PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 13 LRYAEALTALHDAPLGSLHLDIEDTSFI-----NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 44456778899999997655 4554 43332234566777655544444 44554 4578889999998887
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----E
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS----L 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~----L 267 (398)
..-+. ....++++++|++|..+...+. |. ++.+.+.+++.. +|.|- =
T Consensus 88 H~Ea~----------------~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~~i~~~l~~-----vD~VlvMsV~ 138 (210)
T PRK08005 88 HAESV----------------QNPSEILADIRAIGAKAGLALN-----PA---TPLLPYRYLALQ-----LDALMIMTSE 138 (210)
T ss_pred cccCc----------------cCHHHHHHHHHHcCCcEEEEEC-----CC---CCHHHHHHHHHh-----cCEEEEEEec
Confidence 54321 2345678889999999875554 32 467777766542 33322 2
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+.-.|...=..+.+-|+.+++..+...|++ |=|.-..|+-...++||+.+=+
T Consensus 139 PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 139 PDGRGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred CCCccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence 344555555667777888887766433444 6788889999999999996633
No 153
>PRK13753 dihydropteroate synthase; Provisional
Probab=96.12 E-value=1.6 Score=43.12 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=89.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCH-HHHH---HHHHhcc--CCcEEEEeCCHhhHHHHHHcC
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADA-KDVM---AAIQNVE--GARFPVLTPNLKGFEAAVAAG 185 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~-~~v~---~~i~~~~--~~~l~~l~~n~~~ie~a~~~G 185 (398)
|..++.+..++-+..+.+.|.+.|++|.-.. |..-| -++ +|+. ..++.+. +..+++=+.+.+-++.|+++|
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~--vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aG 96 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP--VSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRG 96 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc--CCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcC
Confidence 3347889999999999999999999997554 43221 122 3333 2333332 334443345677789999999
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC----CCC--CC-CH-----HHHHHH
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP----VEG--MV-PP-----SKVAYV 253 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~----~~~--r~-~~-----~~l~~~ 253 (398)
++.|.=....++ ..+.+.+.+.+..+. +|..-|.+ ... .+ ++ +++.+-
T Consensus 97 adiINDVsg~~d------------------~~~~~vva~~~~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~ 156 (279)
T PRK13753 97 VGYLNDIQGFPD------------------PALYPDIAEADCRLV--VMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR 156 (279)
T ss_pred CCEEEeCCCCCc------------------hHHHHHHHHcCCCEE--EEecCCCCCCCCcccCCCcchHHHHHHHHHHHH
Confidence 997654322211 122334446666654 55543211 111 11 11 244455
Q ss_pred HHHHHhCCC--CEEEEccCcCcC---CHHHHHHHHHHHH
Q 015894 254 SKQLYDMGC--SEISLGDTIGVG---TPGTVIPMLEAVL 287 (398)
Q Consensus 254 a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~lv~~l~ 287 (398)
++.+.++|+ +.|.|==-.|.+ ++++-.++++.+.
T Consensus 157 i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~ 195 (279)
T PRK13753 157 VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQ 195 (279)
T ss_pred HHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHH
Confidence 666778898 467776677753 6777777777654
No 154
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.09 E-value=0.23 Score=47.56 Aligned_cols=166 Identities=13% Similarity=0.129 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCH-hhHHHHHHcCCCEEEEeccC
Q 015894 123 ELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNL-KGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~-~~ie~a~~~Gv~~v~i~~~~ 195 (398)
+-++.|.+ |++.+=+ |.|+ |++.=...+++.+++.++..+- .++.+. +-++..+++|++.|.+..-+
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FV-----PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFV-----PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccC-----CCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccC
Confidence 34456666 8887655 4444 4333223466777765554443 455565 45788899999988875432
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCc
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTI 271 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~ 271 (398)
++ ....++++++|++|.++...|. |. ++.+.+.++...+ |.|-+ +.-.
T Consensus 93 ~~---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~l~~v-----D~VLvMsV~PGf~ 144 (229)
T PRK09722 93 IN---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYYIHLL-----DKITVMTVDPGFA 144 (229)
T ss_pred Cc---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHHHHhc-----CEEEEEEEcCCCc
Confidence 21 1234677899999999875554 32 4677777766532 33211 3344
Q ss_pred CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
|...=..+.+.|+.+|+..+.-.+.+..-=|=|.-..|+-...++||+.+=
T Consensus 145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 145 GQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred chhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 555556666677777765543233444555778888999999999999774
No 155
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.08 E-value=1 Score=43.45 Aligned_cols=205 Identities=15% Similarity=0.083 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
.+-+++++.+.+.|++.+=+.-...... ......+++..+.+..+..+.+- +++.++++.++..|++.|-+-..
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~-- 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA-- 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh--
Confidence 3567899999999999887764322110 00112234444443334444433 47899999999999998866322
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCC-----------C-CCCCHHHHHHHHHHHHhCCCC
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSCVVGCPV-----------E-GMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~~fg~~~-----------~-~r~~~~~l~~~a~~l~~~Gad 263 (398)
.+ +..+.+.+ .++..| -.+.+.+-+ .+.+. . ...+.....++++.+.++|++
T Consensus 106 -~~----------~~p~~~~~---~~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~ 170 (254)
T TIGR00735 106 -AV----------KNPELIYE---LADRFGSQCIVVAIDA-KRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG 170 (254)
T ss_pred -Hh----------hChHHHHH---HHHHcCCCCEEEEEEe-ccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence 11 11122222 233344 233333321 00000 0 012345567888899999999
Q ss_pred EEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEE-eeccccCCCCCCCCCCCC
Q 015894 264 EISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTV-DSSVSGLGGCPYAKGASG 339 (398)
Q Consensus 264 ~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~V-D~Sv~GlGecp~a~graG 339 (398)
.|.+ -|..|.+.... .++++.+++..+ +|+-..+=-.- ..-+..++..| |+.| -++.. -.|
T Consensus 171 ~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~GGi~s---~~di~~~~~~g~~dgv~~g~a~----------~~~ 235 (254)
T TIGR00735 171 EILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASGGAGK---PEHFYEAFTKGKADAALAASVF----------HYR 235 (254)
T ss_pred EEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeCCCCC---HHHHHHHHHcCCcceeeEhHHH----------hCC
Confidence 9988 55555544433 456777777654 45665542211 12233445556 7764 22222 245
Q ss_pred CccHHHHHHHHHhCCCCC
Q 015894 340 NVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 340 Na~lE~vv~~L~~~Gi~t 357 (398)
..+++++...|++.||..
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 678999999999888753
No 156
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=96.04 E-value=1.5 Score=42.08 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=103.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCccc-CCC--CHHHHHHHHHhccCCcEEEEeC---C-----H-----------hhHHH
Q 015894 123 ELIKLLVSSGLAVVEATSFVSPKWVP-QLA--DAKDVMAAIQNVEGARFPVLTP---N-----L-----------KGFEA 180 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~~~~~p-~~~--D~~~v~~~i~~~~~~~l~~l~~---n-----~-----------~~ie~ 180 (398)
+.++.+.+.|++.+|+.......+.+ .+. +.+++.+.+++ .++++++..+ | . +.++.
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 46677888899999986433212211 111 12333333332 2455554432 1 1 12456
Q ss_pred HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
|.+.|++.|.+..+.. ...++++.++++.+.++.+-+ .|+.+ .+....+.+..--.+++.+.++++.+.
T Consensus 93 A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l--~lEn~~~~~~~~~~~~~~~~~ll~~v~ 163 (273)
T smart00518 93 CEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVI--LLETTAGKGSQIGSTFEDLKEIIDLIK 163 (273)
T ss_pred HHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEE--EEeccCCCCCccCCCHHHHHHHHHhcC
Confidence 6778999887754321 123456666666555554433 44433 233211111111135677777766543
Q ss_pred hCCCCEE-EEccCc-----Cc--CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894 259 DMGCSEI-SLGDTI-----GV--GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG 329 (398)
Q Consensus 259 ~~Gad~I-~L~DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG 329 (398)
.. +.+ ..-|+. |. .+|..+.++++.+.+.++ +-..++|+||+.|. .|- -+
T Consensus 164 ~~--~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~---------~~ 222 (273)
T smart00518 164 EL--DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS---------GK 222 (273)
T ss_pred CC--CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC---------CC
Confidence 21 212 122332 21 247778888888776664 33489999998862 111 11
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894 330 GCPYAKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 330 ecp~a~graGNa~lE~vv~~L~~~Gi 355 (398)
.+-.+. +.|..+.+.+...|+..++
T Consensus 223 d~H~~~-G~G~id~~~~~~~l~~~~~ 247 (273)
T smart00518 223 DRHENL-GEGYIGFEPFRLLMADKRF 247 (273)
T ss_pred ccccCC-CCCCCChHHHHHHhhChhh
Confidence 122222 2678999999888876433
No 157
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.04 E-value=0.75 Score=45.42 Aligned_cols=227 Identities=18% Similarity=0.174 Sum_probs=145.6
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH----hccCCcEEEEe---CCHhh
Q 015894 107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ----NVEGARFPVLT---PNLKG 177 (398)
Q Consensus 107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~----~~~~~~l~~l~---~n~~~ 177 (398)
++.+..+ +....+....|+++-.+.+-+.|=-.+...-++.. -...+...++ ..+ +.+.... .+.++
T Consensus 15 e~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~g---g~~~~~~~v~~~a~~~~-vPV~lHlDHg~~~~~ 90 (286)
T COG0191 15 ENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAG---GADSLAHMVKALAEKYG-VPVALHLDHGASFED 90 (286)
T ss_pred HcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhc---hHHHHHHHHHHHHHHCC-CCEEEECCCCCCHHH
Confidence 3444443 34678888999999999999998887654333221 0223333333 223 4444433 36788
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CC------CCHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GM------VPPSK 249 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r------~~~~~ 249 (398)
+..++++|...+.+=-|. .+.+|.+...+++++.|+..|+.|++.|-..-|-++. .- ++|+.
T Consensus 91 ~~~ai~~GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~e 160 (286)
T COG0191 91 CKQAIRAGFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEE 160 (286)
T ss_pred HHHHHhcCCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHH
Confidence 999999999988773332 2467899999999999999999999988876666662 22 33333
Q ss_pred HHHHHHHHHhCCCCE--EEEccCcCcCCHHH---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 250 VAYVSKQLYDMGCSE--ISLGDTIGVGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 250 l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
.+++ ...-|+|. +.|.-.=|.-.|.. =.++++.+++..+ +||.+|+=- |........|++.|+.-|+..
T Consensus 161 a~~f---v~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvNi~ 234 (286)
T COG0191 161 ALEF---VERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVNID 234 (286)
T ss_pred HHHH---HhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEeeC
Confidence 3333 33456875 45666666655422 2355677777666 678888765 999999999999999876543
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894 325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI 366 (398)
Q Consensus 325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~ 366 (398)
-- .-.+.+..+-.++.+. ...+|..+++.
T Consensus 235 Td-----------~~~A~~~avr~~~~~~--~k~~DpR~~l~ 263 (286)
T COG0191 235 TD-----------LQLAFTAAVREYLAEN--PKEYDPRKYLK 263 (286)
T ss_pred cH-----------HHHHHHHHHHHHHHhC--cccCCHHHHHH
Confidence 21 1134444454445443 13577765554
No 158
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=96.02 E-value=1.5 Score=41.98 Aligned_cols=214 Identities=14% Similarity=0.097 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccCCcEEEEeC--CHhhHHHHHHcCCCEEEE-e
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEGARFPVLTP--NLKGFEAAVAAGAKEVAI-F 192 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--n~~~ie~a~~~Gv~~v~i-~ 192 (398)
++..-++-...|.+-|+..+-+.... +...+|- .+..+.+..+++-.+..+.+.+- ...+++...+.++|.+-+ |
T Consensus 40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl-~kf~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDf 118 (275)
T COG1856 40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPL-WKFKDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDF 118 (275)
T ss_pred chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccH-HHHHHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEee
Confidence 44444455567889999988774332 3333452 12233333444444566666652 466889999999998877 5
Q ss_pred ccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---
Q 015894 193 ASASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--- 267 (398)
Q Consensus 193 ~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--- 267 (398)
++-+|. ++..+ .+|.++ +.+.+++.++.|+.|..++..-. +.+...-|+ +.++.+.++..|.+.|
T Consensus 119 vgDn~v-Ik~vy~l~ksv~d----yl~~l~~L~e~~irvvpHitiGL---~~gki~~e~--kaIdiL~~~~~DalVl~vl 188 (275)
T COG1856 119 VGDNDV-IKRVYKLPKSVED----YLRSLLLLKENGIRVVPHITIGL---DFGKIHGEF--KAIDILVNYEPDALVLVVL 188 (275)
T ss_pred cCChHH-HHHHHcCCccHHH----HHHHHHHHHHcCceeceeEEEEe---ccCcccchH--HHHHHHhcCCCCeEEEEEE
Confidence 555554 33333 444444 44566888999999887776322 234444433 5577788898887544
Q ss_pred ccCcCc----C---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH-HHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894 268 GDTIGV----G---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS-NILASLQMGISTVDSSVSGLGGCPYAKGASG 339 (398)
Q Consensus 268 ~DT~G~----~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A-NalaAl~aGa~~VD~Sv~GlGecp~a~graG 339 (398)
-=|.|. . +|+++...++..|+.+|+ |+.+-|---+|---- ---.|+.+|++.|---..|.+| -++
T Consensus 189 iPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~t~e------~ak 261 (275)
T COG1856 189 IPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRGTIE------YAK 261 (275)
T ss_pred ecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeecCCcccee------hhh
Confidence 445553 2 247777788888889998 788878777776533 3346889999999999999999 666
Q ss_pred CccHHHHHH
Q 015894 340 NVATEDVVY 348 (398)
Q Consensus 340 Na~lE~vv~ 348 (398)
-...+.+..
T Consensus 262 ~~r~i~~~~ 270 (275)
T COG1856 262 SIRDIEIIY 270 (275)
T ss_pred hhhhhhhhh
Confidence 655555544
No 159
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.02 E-value=0.38 Score=46.87 Aligned_cols=179 Identities=20% Similarity=0.233 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-------EeC--C----HhhHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-------LTP--N----LKGFEAA 181 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-------l~~--n----~~~ie~a 181 (398)
..+.++..++++...+.|++.+-+... +++. ..+.+. .++.+.+ +.+ . ...++.+
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~~~----~~~~------~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A 102 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMHKG----LARH------GHRGYG--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEA 102 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeCHh----HHhh------hccccC--CCCcEEEEEcCCCCCCCCCCcceeeecHHHH
Confidence 346667788999999999999888532 1111 000010 1221111 111 1 1357899
Q ss_pred HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894 182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G 261 (398)
++.|++.|.+....... +..+.++.+.++++.|++.|+.+-+ +.+..|...++..+++.+...++.+.++|
T Consensus 103 ~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~v-i~~~~g~~~e~~~~~~~i~~a~~~a~e~G 173 (267)
T PRK07226 103 IKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLA-MMYPRGPGIKNEYDPEVVAHAARVAAELG 173 (267)
T ss_pred HHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEE-EEecCCCccCCCccHHHHHHHHHHHHHHC
Confidence 99999988776543221 1346788888999999999998764 22222221223346778888888899999
Q ss_pred CCEEEEccCcCcCCHHHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 262 CSEISLGDTIGVGTPGTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+|.|-..=+ | .+ ++++.+.+. .|..-++=--.+|+-.++.+.-.++++||+.+
T Consensus 174 AD~vKt~~~-~--~~----~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gi 228 (267)
T PRK07226 174 ADIVKTNYT-G--DP----ESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGV 228 (267)
T ss_pred CCEEeeCCC-C--CH----HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 999866511 1 23 334444432 34322221222377788999999999999944
No 160
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.99 E-value=0.055 Score=51.55 Aligned_cols=188 Identities=18% Similarity=0.175 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----------C-----HhhHHHHHHc
Q 015894 120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----------N-----LKGFEAAVAA 184 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----------n-----~~~ie~a~~~ 184 (398)
+..++++...+.|++.|-+.... + ......+.. .+.++..++. . ...++.|++.
T Consensus 20 ~~~~~~~~a~~~~~~av~v~p~~----~------~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVTPGY----V------KPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEEGGG----H------HHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCCEEEECHHH----H------HHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 67788888899999999886421 1 111111211 1235554442 1 2357889999
Q ss_pred CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|++.|.+.+........ ..++.++.+.++++.|++.|+++... ....+.+.....+++.+...++.+.++|+|.
T Consensus 89 GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~ 162 (236)
T PF01791_consen 89 GADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADF 162 (236)
T ss_dssp T-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred CCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence 99999987765332111 25678899999999999999987644 3322222222335667889999999999998
Q ss_pred EEEccC-cCcCCHHHHHHHHHHHHhh-CCC-CeEEEE---eCCccchHHHHHHHHHHhCCCEEeec
Q 015894 265 ISLGDT-IGVGTPGTVIPMLEAVLDA-VPV-DKLAVH---FHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 265 I~L~DT-~G~~~P~~v~~lv~~l~~~-~p~-~~l~~H---~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
|-..=+ ....++.++..+-+.+... .|. +.|-+= .+.++=-.+.-++..+++||+++=++
T Consensus 163 vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~ 228 (236)
T PF01791_consen 163 VKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTS 228 (236)
T ss_dssp EEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEE
T ss_pred EEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHH
Confidence 765444 2455566666655555532 232 112222 22223344677788889999875444
No 161
>PLN02334 ribulose-phosphate 3-epimerase
Probab=95.97 E-value=1.5 Score=41.61 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccC
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~ 195 (398)
..-.+.++.+.+.|++.|-+-.... .++|...-..+..+.+++.++..+.+ ++.+. .-++.+.++|++.|.+...-
T Consensus 20 ~~l~~~l~~~~~~g~~~ihld~~d~-~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q 98 (229)
T PLN02334 20 ANLAEEAKRVLDAGADWLHVDVMDG-HFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ 98 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccC-CcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Confidence 3445678889999999998843211 12333221124556666655544333 34443 45788899999999554431
Q ss_pred -chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE----cc
Q 015894 196 -SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISL----GD 269 (398)
Q Consensus 196 -Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L----~D 269 (398)
.+ +...+.++.+++.|..+...+. |. ++.+. ++.+.+.| +|.|.+ +.
T Consensus 99 ~~~---------------d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~~----~~~~~~~~~~Dyi~~~~v~pg 151 (229)
T PLN02334 99 AST---------------IHLHRLIQQIKSAGMKAGVVLN-----PG---TPVEA----VEPVVEKGLVDMVLVMSVEPG 151 (229)
T ss_pred ccc---------------hhHHHHHHHHHHCCCeEEEEEC-----CC---CCHHH----HHHHHhccCCCEEEEEEEecC
Confidence 11 2234667888888987653221 11 22322 33344553 887733 33
Q ss_pred CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 270 TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 270 T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
+.|...|....+.++.+++..+..+|.+ +=|.-..|.-..+++||+.|=
T Consensus 152 ~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv 200 (229)
T PLN02334 152 FGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV 200 (229)
T ss_pred CCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence 4454455666777888887766555554 346667788899999999773
No 162
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=95.88 E-value=0.5 Score=44.91 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCHh-hHHHHHHcCCCEEEE
Q 015894 120 VKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNLK-GFEAAVAAGAKEVAI 191 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~~-~ie~a~~~Gv~~v~i 191 (398)
.-.+-++.|.++|++.+=+ |.|+ |.+.=-..+++.+++. ++..+-+ ++.+.. -++..+++|++.|.+
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~ 87 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITF 87 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 3345677888999997666 5554 3333233567777765 4555544 445654 468889999998887
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---- 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---- 267 (398)
..-+ ...+.++++++|++|.++...+. |. ++.+.+.++++. +|.|-+
T Consensus 88 H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln-----P~---Tp~~~i~~~l~~-----~D~vlvMtV~ 138 (220)
T PRK08883 88 HVEA----------------SEHVDRTLQLIKEHGCQAGVVLN-----PA---TPLHHLEYIMDK-----VDLILLMSVN 138 (220)
T ss_pred cccC----------------cccHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHHHHh-----CCeEEEEEec
Confidence 5432 23345678889999999875444 32 466777666542 233322
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+.+.|.-.=....+.++.+++..+ +.+|.+ |-|.-..|+-..+++||+.+
T Consensus 139 PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 139 PGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred CCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 233343232334445666666543 244555 88899999999999999977
No 163
>PLN02858 fructose-bisphosphate aldolase
Probab=95.85 E-value=0.93 Score=53.95 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=146.2
Q ss_pred ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc--CCcEEEEe---CCHhhH
Q 015894 107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE--GARFPVLT---PNLKGF 178 (398)
Q Consensus 107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~--~~~l~~l~---~n~~~i 178 (398)
++.+..+ +.++.+....++++-.+.+.+.|=-.++..-++.+ .+ +...++. .. .+.+.... .+.+.+
T Consensus 1111 ~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i 1185 (1378)
T PLN02858 1111 KGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG----IP-LVSCCIAAAEQASVPITVHFDHGTSKHEL 1185 (1378)
T ss_pred HCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC----HH-HHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 3444444 35788888889999999999988776554333222 22 3333332 12 34444433 367889
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKV 250 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l 250 (398)
.+|+++|.+.|.+=.| ..+.+|+++.-++++++|+..|+.|++.|-..-|.++. ..++|+..
T Consensus 1186 ~~ai~~Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a 1255 (1378)
T PLN02858 1186 LEALELGFDSVMVDGS----------HLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQA 1255 (1378)
T ss_pred HHHHHhCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHH
Confidence 9999999998887333 23578999999999999999999999888776555543 14677776
Q ss_pred HHHHHHHHhCCCCEE--EEccCcCcC---CHHHHHHHHHHHHhhCC--CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 251 AYVSKQLYDMGCSEI--SLGDTIGVG---TPGTVIPMLEAVLDAVP--VDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I--~L~DT~G~~---~P~~v~~lv~~l~~~~p--~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.++++ +-|+|.+ .+.-.=|.- .|.==.++++.+++..+ ++||.+|+=. |..-.....|++.|+.-|
T Consensus 1256 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgS--G~~~~~~~~ai~~Gi~Ki-- 1328 (1378)
T PLN02858 1256 KEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGAS--GLPESLIKECIENGVRKF-- 1328 (1378)
T ss_pred HHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCC--CCCHHHHHHHHHcCCeEE--
Confidence 66654 5688864 444454543 24444567888888873 5788888754 555788999999999766
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894 324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI 366 (398)
Q Consensus 324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~ 366 (398)
|..||.-..+.+...-...+|..++..
T Consensus 1329 ----------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858 1329 ----------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred ----------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence 555666666555432123466544443
No 164
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.83 E-value=1.7 Score=40.86 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=106.1
Q ss_pred CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE-
Q 015894 93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL- 171 (398)
Q Consensus 93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l- 171 (398)
++|+.+.+...+. .|.-. -+.++..++++...+.|...++++. . +.++.+++..+..+..+
T Consensus 2 ~~~~~~~~~~~~~-~~~~~----~~~~~~~~~a~a~~~~G~~~~~~~~------------~-~~i~~i~~~~~~Pil~~~ 63 (221)
T PRK01130 2 QLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANG------------V-EDIKAIRAVVDVPIIGII 63 (221)
T ss_pred CcCCCEEEEecCC-CCCCC----CCHHHHHHHHHHHHHCCCeEEEcCC------------H-HHHHHHHHhCCCCEEEEE
Confidence 3566777776665 33222 3567779999999999999999742 1 33445554334433222
Q ss_pred ----------e-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecC
Q 015894 172 ----------T-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGC 239 (398)
Q Consensus 172 ----------~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~ 239 (398)
. ...+.++.+.++|+|.|-+-.+..+. +. -+.+.++++.+++ .|+.+.+.
T Consensus 64 ~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---------p~--~~~~~~~i~~~~~~~~i~vi~~------- 125 (221)
T PRK01130 64 KRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---------PD--GETLAELVKRIKEYPGQLLMAD------- 125 (221)
T ss_pred ecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CCCHHHHHHHHHhCCCCeEEEe-------
Confidence 1 23457899999999966654332100 00 0223466788888 67765421
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHH
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLG--DTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASL 314 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl 314 (398)
. .+++. ++.+.+.|+|.|.+. +..|. .....-.++++.+++.+. +|+-. ..|.. ..++..++
T Consensus 126 -v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~GGI~t~~~~~~~l 192 (221)
T PRK01130 126 -C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----EGRINTPEQAKKAL 192 (221)
T ss_pred -C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHH
Confidence 1 24444 356788999988652 21111 111122456777777653 34443 55774 57888888
Q ss_pred HhCCCEE
Q 015894 315 QMGISTV 321 (398)
Q Consensus 315 ~aGa~~V 321 (398)
++|++.|
T Consensus 193 ~~GadgV 199 (221)
T PRK01130 193 ELGAHAV 199 (221)
T ss_pred HCCCCEE
Confidence 9998865
No 165
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.80 E-value=1.5 Score=41.86 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=110.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHH
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAV 182 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~ 182 (398)
+...+.++..++++.-.+.|+..+-+ +|.|+|. ....++.....+++..+ | + ....+.++
T Consensus 18 k~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai 87 (228)
T COG0274 18 KPDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAI 87 (228)
T ss_pred CCCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHH
Confidence 34567888888999999999887776 5666642 12233321223344433 3 1 13456889
Q ss_pred HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
+.|+++|.+.+..... ...+++...+.++.+++.+..+ ..+-+-+. . ...+.+.....++...++|+
T Consensus 88 ~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlE--t-----~~Lt~ee~~~A~~i~~~aGA 154 (228)
T COG0274 88 ENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILE--T-----GLLTDEEKRKACEIAIEAGA 154 (228)
T ss_pred HcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEe--c-----cccCHHHHHHHHHHHHHhCC
Confidence 9999999998875332 2346777888888888887765 33333233 1 23456677888999999999
Q ss_pred CEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 263 SEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 263 d~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|-|-=. =+.|..+++++.-+.+.+... +++-.---..- ..-+++-+++|+.+|
T Consensus 155 dFVKTSTGf~~~gAT~edv~lM~~~vg~~-----vgvKaSGGIrt-~eda~~~i~aga~Ri 209 (228)
T COG0274 155 DFVKTSTGFSAGGATVEDVKLMKETVGGR-----VGVKASGGIRT-AEDAKAMIEAGATRI 209 (228)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHhccC-----ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence 976321 125777888887777776432 33332211111 245566677886654
No 166
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=95.79 E-value=0.62 Score=45.44 Aligned_cols=183 Identities=12% Similarity=0.161 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHc--CCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAA--GAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~--Gv~~v~ 190 (398)
-+.+..++.+..+.+.|.+.|++|..+.+. .+.+.+...++.+ .++.++.=+.+.+-++.|++. |.+.|.
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 355667788999999999999999764331 1133344444432 355555555677888899987 877654
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEc
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISLG 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L~ 268 (398)
++|-. + ++..+++..++++|..+.+-.+..-|.|....-..+++.+.++.+.++|++ .|.+=
T Consensus 97 ---sIs~~------~-------~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD 160 (261)
T PRK07535 97 ---SVSAE------G-------EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID 160 (261)
T ss_pred ---eCCCC------C-------ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence 22210 0 112345667788888775322211122211000125566677778889984 55543
Q ss_pred cCcCc--CCH---HHHHHHHHHHHhhCCCCeEEEEeCC-ccchHH------HHHHHHHHhCCC
Q 015894 269 DTIGV--GTP---GTVIPMLEAVLDAVPVDKLAVHFHD-TYGQAL------SNILASLQMGIS 319 (398)
Q Consensus 269 DT~G~--~~P---~~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA~------ANalaAl~aGa~ 319 (398)
=-+|. -.+ .++-+.++.+++.+|+.|+.+=.+| .+|++- +=...|+++|.+
T Consensus 161 Pgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~ 223 (261)
T PRK07535 161 PLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMD 223 (261)
T ss_pred CCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCC
Confidence 33341 123 3345566667777776666665554 356531 222344566654
No 167
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.76 E-value=1.6 Score=46.45 Aligned_cols=174 Identities=15% Similarity=0.040 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccC
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
+..++-+..+.+.|.+.|++|..... | +++.+...++.+ .+..++.=+.+.+-+++|+++|++.|. ++
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~---p---~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN---sV 235 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD---D---DPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI---MP 235 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC---C---cHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE---EC
Confidence 66788899999999999999975431 1 233455555533 244444445788889999999999766 33
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~ 275 (398)
|. . ++.++...+++.|..+. ++. .......+++.+.++.+.++|.+.| +.|-.=...
T Consensus 236 s~------------~---~~d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~l~~~ie~a~~~Gi~~I-IlDPglg~~ 292 (499)
T TIGR00284 236 DV------------E---NAVELASEKKLPEDAFV--VVP-----GNQPTNYEELAKAVKKLRTSGYSKV-AADPSLSPP 292 (499)
T ss_pred Cc------------c---chhHHHHHHHHcCCeEE--EEc-----CCCCchHHHHHHHHHHHHHCCCCcE-EEeCCCCcc
Confidence 32 1 12244566677777664 332 1111223788888999999999764 445322223
Q ss_pred HHHHHHHHHHHH---hhCCCCeE--EE-Ee-----CCccchHHHHHHHHHHhCCCEEeecc
Q 015894 276 PGTVIPMLEAVL---DAVPVDKL--AV-HF-----HDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 276 P~~v~~lv~~l~---~~~p~~~l--~~-H~-----Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
+..+.+-+..++ +.++ .|+ ++ .. =+..|.-.+-+..|++.||++|=+.=
T Consensus 293 ~~~l~~sL~~l~~~r~~~~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 293 LLGLLESIIRFRRASRLLN-VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred hHHHHHHHHHHHHHHHhcC-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence 344555555554 3554 233 32 00 13445556666778899999875554
No 168
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=95.73 E-value=1.3 Score=44.13 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~ 190 (398)
.++.++..++++.+.+.|+..|-++.. .|- + ..|..++++.+++.++.+-..++.| .+.++...++|++.|.
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltGG-EPl-l--~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ 117 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTGG-EPL-L--RKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVN 117 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECc-ccc-c--cCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEE
Confidence 578999999999999999998888642 221 1 1255666666666566632333333 2346677889999999
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEE
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISL 267 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L 267 (398)
|.+...+......+.. ....++.+.+.++.+++.|+. +..+.... + ..+.+++.++++.+.+.|++ -|.+
T Consensus 118 ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~---~---g~n~~ei~~l~~~~~~~gv~~~~ie~ 190 (334)
T TIGR02666 118 VSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVM---R---GVNDDEIVDLAEFAKERGVTLRFIEL 190 (334)
T ss_pred EecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---C---CCCHHHHHHHHHHHHhcCCeEEEEec
Confidence 8765432211112211 112455666777888999997 66443321 1 13567888999999999986 2345
Q ss_pred ccCcCcCC-----HHHHHHHHHHHHhhCC
Q 015894 268 GDTIGVGT-----PGTVIPMLEAVLDAVP 291 (398)
Q Consensus 268 ~DT~G~~~-----P~~v~~lv~~l~~~~p 291 (398)
....+... .....++++.+++.++
T Consensus 191 mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 191 MPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred cCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 54433211 1235567777777664
No 169
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.71 E-value=0.35 Score=46.15 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCH-hhHHHHHHcCCCEEEE
Q 015894 120 VKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNL-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i 191 (398)
.-.+-++.|.+.|++.+=+ |.|+ |++.=...+++.+++. ++..+-+ ++.+. .-++..+++|++.|.+
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~ 91 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISF 91 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 3345678888999997666 5554 3333233567777765 5655544 44554 4578889999998887
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---- 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---- 267 (398)
..-.+ ....++++++|++|..+...+. |. ++.+.+.++... +|.|-+
T Consensus 92 H~Ea~----------------~~~~~~l~~Ir~~g~k~Glaln-----P~---T~~~~i~~~l~~-----vD~VlvMtV~ 142 (223)
T PRK08745 92 HPEAS----------------RHVHRTIQLIKSHGCQAGLVLN-----PA---TPVDILDWVLPE-----LDLVLVMSVN 142 (223)
T ss_pred cccCc----------------ccHHHHHHHHHHCCCceeEEeC-----CC---CCHHHHHHHHhh-----cCEEEEEEEC
Confidence 54322 2345677888999998875554 32 466777666542 233222
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+.-.|.-.=..+.+-++.+++..+...+.+..-=|=|....|+-...++||+.+
T Consensus 143 PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~ 196 (223)
T PRK08745 143 PGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF 196 (223)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence 334455554566666777776654322334455577888899999999999865
No 170
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.69 E-value=1.5 Score=44.88 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCC---CCcccCCCCHHHHHHHHH---hccCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVS---PKWVPQLADAKDVMAAIQ---NVEGARFPVLTPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~---~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~ 190 (398)
+.++.+++|+.|.+.|+..+--|+|-. |...-.+ . .+-+..++ +-.+..+..=+.+..+++.+.+. ++.+.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~-~-~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk 206 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGL-G-VEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ 206 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCC-C-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE
Confidence 578889999999999999999887642 2111011 1 12223333 22344444434577889988888 99888
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
|.... . + + .++++++.+.|.+|. ++ .+. .+++++...++.+.+.|.+.|.|+.
T Consensus 207 I~s~~--~--------~------n-~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 207 IGARN--M--------Q------N-FELLKAAGRVNKPVL--LK-------RGLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred ECccc--c--------c------C-HHHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 74331 1 1 1 145566667888875 33 233 5899999999999999998899997
Q ss_pred -C-cCcCCH--H--HHHHHHHHHHhhCCCCeEEE-EeCCccc---hHHHHHHHHHHhCCC--EEeecc
Q 015894 270 -T-IGVGTP--G--TVIPMLEAVLDAVPVDKLAV-HFHDTYG---QALSNILASLQMGIS--TVDSSV 325 (398)
Q Consensus 270 -T-~G~~~P--~--~v~~lv~~l~~~~p~~~l~~-H~Hnd~G---lA~ANalaAl~aGa~--~VD~Sv 325 (398)
. ..+-+| . .+.. +..+++.+. .|+++ =.|- .| +..+.+++|+.+||+ +|+.=.
T Consensus 261 rg~s~yp~~~~~~ldl~~-i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 261 RGIRTYEKATRNTLDISA-VPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CccCCCCCCCCCCcCHHH-HHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 2 111112 1 2333 455666554 56888 3443 55 777899999999996 666544
No 171
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.66 E-value=1.8 Score=40.02 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS 194 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~ 194 (398)
+.++-.++++.+.+.|++.||+..-.. +..++++.+++. +.+...+ ..-+.++++.|++.|++.|+.-.-
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~--------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~ 93 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSD--------QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV 93 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC--------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence 678889999999999999999986321 345666666643 4443332 223458899999999999976321
Q ss_pred CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894 195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274 (398)
Q Consensus 195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~ 274 (398)
- .+.++.++.+++..- .| -.+++++. ++.++|+|.|.+==|.-..
T Consensus 94 ~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e~~----~A~~~Gadyv~~Fpt~~~~ 138 (187)
T PRK07455 94 D--------------------PELIEAAVAQDIPII------PG-----ALTPTEIV----TAWQAGASCVKVFPVQAVG 138 (187)
T ss_pred C--------------------HHHHHHHHHcCCCEE------cC-----cCCHHHHH----HHHHCCCCEEEECcCCccc
Confidence 1 133556677777532 23 24565543 3456999998873331111
Q ss_pred CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 275 ~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
. .++++.++..+|.+|+-.= =|.-..|+-.-+++|++.|=
T Consensus 139 G----~~~l~~~~~~~~~ipvvai----GGI~~~n~~~~l~aGa~~va 178 (187)
T PRK07455 139 G----ADYIKSLQGPLGHIPLIPT----GGVTLENAQAFIQAGAIAVG 178 (187)
T ss_pred C----HHHHHHHHhhCCCCcEEEe----CCCCHHHHHHHHHCCCeEEE
Confidence 1 3557777776665554442 36667899999999998663
No 172
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.91 Score=43.24 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccCch
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASASE 197 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd 197 (398)
-.+-++.+.++|.+.|=+-... ..++|++.=-..+++.++...+..+-+ |+.+. +-++..+++|++.|.+..-.+
T Consensus 18 l~~el~~~~~agad~iH~DVMD-ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~- 95 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMD-GHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEAT- 95 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccC-CCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccC-
Confidence 3456788899999976663211 123344433345777777654444433 44454 457888999999988765422
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCcCc
Q 015894 198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTIGV 273 (398)
Q Consensus 198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~G~ 273 (398)
..+.++++++|++|.+..+.++ |. |+.+.+.++... +|.|-+ +.-.|.
T Consensus 96 ---------------~~~~r~i~~Ik~~G~kaGv~ln-----P~---Tp~~~i~~~l~~-----vD~VllMsVnPGfgGQ 147 (220)
T COG0036 96 ---------------EHIHRTIQLIKELGVKAGLVLN-----PA---TPLEALEPVLDD-----VDLVLLMSVNPGFGGQ 147 (220)
T ss_pred ---------------cCHHHHHHHHHHcCCeEEEEEC-----CC---CCHHHHHHHHhh-----CCEEEEEeECCCCccc
Confidence 3345778899999999875554 32 456776666543 344333 445566
Q ss_pred CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE-eec
Q 015894 274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV-DSS 324 (398)
Q Consensus 274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V-D~S 324 (398)
..-.++.+-++.+|+..+... .+-.-=|-|.-..|+-.+.+|||+++ -+|
T Consensus 148 ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 148 KFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred ccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 666778888888888776321 33344477999999999999999955 444
No 173
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.64 E-value=0.7 Score=44.32 Aligned_cols=171 Identities=15% Similarity=0.031 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCCH-hhHHHHHHcCCCEEE
Q 015894 118 AVVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPNL-KGFEAAVAAGAKEVA 190 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n~-~~ie~a~~~Gv~~v~ 190 (398)
...-.+-++.|.++|++.+=+ |.|+ |++.=...+++.++. +..+ -.++.|. +-++..+++|++.|.
T Consensus 24 ~~~l~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It 96 (228)
T PRK08091 24 WLKFNETLTTLSENQLRLLHFDIADGQFS-----PFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVT 96 (228)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence 344556788899999997666 4554 333222344555553 3333 3445564 457888999999888
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--- 267 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--- 267 (398)
+.+-++ ....++++..|++|..+.+.+.. +|. ++.+.+.+++.. +|.|-+
T Consensus 97 ~H~Ea~----------------~~~~~~l~~Ik~~g~~~kaGlal---nP~---Tp~~~i~~~l~~-----vD~VLiMtV 149 (228)
T PRK08091 97 LQVEQT----------------HDLALTIEWLAKQKTTVLIGLCL---CPE---TPISLLEPYLDQ-----IDLIQILTL 149 (228)
T ss_pred EcccCc----------------ccHHHHHHHHHHCCCCceEEEEE---CCC---CCHHHHHHHHhh-----cCEEEEEEE
Confidence 754321 23456778889999944433442 232 567777776653 343322
Q ss_pred -ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 268 -GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 268 -~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
+.-.|...-..+.+-|+.+++..+.-.+.+..-=|=|.-..|+-...++||+++=
T Consensus 150 ~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V 205 (228)
T PRK08091 150 DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVV 205 (228)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEE
Confidence 3344555445666777777765442122222334667778899999999999663
No 174
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.58 E-value=0.32 Score=47.73 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----------ccCcCcCCHHH
Q 015894 209 EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----------GDTIGVGTPGT 278 (398)
Q Consensus 209 ~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----------~DT~G~~~P~~ 278 (398)
++.++.+++. .++.+..+.+.|.. .+++.+.+.++.+.++|+|.|.| .+..| ..|..
T Consensus 75 ~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~ 141 (296)
T cd04740 75 EAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEA 141 (296)
T ss_pred HHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHH
Confidence 4445544332 22345566555541 35788999999999999998876 12222 57899
Q ss_pred HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 279 VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 279 v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+.++++++++.. +.||.+..--+..-...-+..+.++|++.|+.
T Consensus 142 ~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 142 VAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 999999999876 45777776544443445556678899998755
No 175
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.58 E-value=0.32 Score=47.03 Aligned_cols=191 Identities=15% Similarity=0.133 Sum_probs=112.8
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe----C
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT----P 173 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~ 173 (398)
+.=+|-|+-.| ...+.++..++++...+.|++.+-+... +++... .. ...++.+.+-. +
T Consensus 20 ~~aiDh~~l~g-----p~~~~~~~~~~~~~a~~~~~~~v~~~p~----~~~~~~------~~--~~~~~~~~~~~~~~~~ 82 (258)
T TIGR01949 20 IVPMDHGVSNG-----PIKGLVDIRKTVNEVAEGGADAVLLHKG----IVRRGH------RG--YGKDVGLIIHLSASTS 82 (258)
T ss_pred EEECCCccccC-----CCCCcCCHHHHHHHHHhcCCCEEEeCcc----hhhhcc------cc--cCCCCcEEEEEcCCCC
Confidence 33356655443 2346677788999999999999888532 221100 00 01123322211 1
Q ss_pred ------C---HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894 174 ------N---LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM 244 (398)
Q Consensus 174 ------n---~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r 244 (398)
. ...++.+++.|++.|.+.....+ .+..+.++.+.++.+.+++.|..+-+.+ ...|-. .+.
T Consensus 83 ~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~-~~~Gvh-~~~ 152 (258)
T TIGR01949 83 LSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMM-YPRGPH-IDD 152 (258)
T ss_pred CCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEE-eccCcc-ccc
Confidence 1 12478999999998887654221 1234567888889999999999876422 222211 122
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCC--ccchHHHHHHHHHHhCCCEE
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHD--TYGQALSNILASLQMGISTV 321 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hn--d~GlA~ANalaAl~aGa~~V 321 (398)
.+++.+...++.+.+.|+|.|... . ...+..++ .+.+..+ +|+-. =+-+ |+..++.|.-.++++||+.+
T Consensus 153 ~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~l~----~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gi 224 (258)
T TIGR01949 153 RDPELVAHAARLGAELGADIVKTP-Y--TGDIDSFR----DVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGV 224 (258)
T ss_pred ccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHHHH----HHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 455666666788889999999975 1 12333333 3433332 23322 2333 67888999999999999955
Q ss_pred ee
Q 015894 322 DS 323 (398)
Q Consensus 322 D~ 323 (398)
-.
T Consensus 225 a~ 226 (258)
T TIGR01949 225 AV 226 (258)
T ss_pred eh
Confidence 43
No 176
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.31 Score=46.05 Aligned_cols=152 Identities=28% Similarity=0.397 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~ 193 (398)
-+.++-+.++++|.+.|++.||+++-. | ++.+.++.++ +.|++.+.+=+ -+.++++.++++|.+.+-
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV--- 90 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV--- 90 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE---
Confidence 467888999999999999999999743 2 3456666665 56755444332 488999999999998653
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ccCc
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--GDTI 271 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~DT~ 271 (398)
|+. ++ .++++.|+++|+.+.. +-.+|.++. .+.++|++.+-+ +.++
T Consensus 91 --sP~-----~~----------~ev~~~a~~~~ip~~P-----------G~~TptEi~----~Ale~G~~~lK~FPa~~~ 138 (211)
T COG0800 91 --SPG-----LN----------PEVAKAANRYGIPYIP-----------GVATPTEIM----AALELGASALKFFPAEVV 138 (211)
T ss_pred --CCC-----CC----------HHHHHHHHhCCCcccC-----------CCCCHHHHH----HHHHcChhheeecCcccc
Confidence 221 11 3678999999998642 234565533 456799987665 3333
Q ss_pred CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894 272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST 320 (398)
Q Consensus 272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~ 320 (398)
| -| .+++.+.--+|++ -+=-+-|-...|.-.=+.+|+..
T Consensus 139 G--g~----~~~ka~~gP~~~v----~~~pTGGVs~~N~~~yla~gv~a 177 (211)
T COG0800 139 G--GP----AMLKALAGPFPQV----RFCPTGGVSLDNAADYLAAGVVA 177 (211)
T ss_pred C--cH----HHHHHHcCCCCCC----eEeecCCCCHHHHHHHHhCCceE
Confidence 2 22 3455554434543 34456777788998888888543
No 177
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.56 E-value=1.4 Score=44.40 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCC-----CCccc-------CCC--CHHHHH----------HHHH---hccCCcEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVS-----PKWVP-------QLA--DAKDVM----------AAIQ---NVEGARFP 169 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~-----~~~~p-------~~~--D~~~v~----------~~i~---~~~~~~l~ 169 (398)
+.+.-.++++...++|.+.|=...+.. +..-+ ... ...+.+ ..+. +-.++.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 677778899999999999877754321 10000 000 001111 1111 11233333
Q ss_pred EEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894 170 VLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK 249 (398)
Q Consensus 170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~ 249 (398)
.=......++...+.|++.+-|.-. +. .+ ..+++++.+.|.+|- ++ .+..+.++
T Consensus 95 stpfd~~svd~l~~~~v~~~KI~S~--~~--------------~n-~~LL~~va~~gkPvi--ls-------tG~~t~~E 148 (327)
T TIGR03586 95 SSPFDETAVDFLESLDVPAYKIASF--EI--------------TD-LPLIRYVAKTGKPII--MS-------TGIATLEE 148 (327)
T ss_pred EccCCHHHHHHHHHcCCCEEEECCc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence 3334667788888888888777422 11 11 134455556788875 43 23458999
Q ss_pred HHHHHHHHHhCCCCEEEE--ccCcCcCCHHHHHH--HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 250 VAYVSKQLYDMGCSEISL--GDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~--lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+...++.+.+.|.+.|.| | +.++-+|....+ .|..+++.++ .+|++=-|- .| ...+++|+.+||++|+.
T Consensus 149 i~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt-~G--~~~~~aAva~GA~iIEk 221 (327)
T TIGR03586 149 IQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHT-LG--ILAPVAAVALGACVIEK 221 (327)
T ss_pred HHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCC-Cc--hHHHHHHHHcCCCEEEe
Confidence 999999999999976666 7 666666655433 4677777774 689885453 44 67889999999998864
No 178
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=95.53 E-value=1.3 Score=44.15 Aligned_cols=137 Identities=23% Similarity=0.205 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC---H-hhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN---L-KGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n---~-~~ie~a~~~Gv~~v 189 (398)
.++.++..++++.+.+.|+..|.++. ..| -+ .|..++++.+++.++..-..++.| . +.++...++|++.|
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEP----ll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i 122 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG-GEP----LLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRV 122 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC-CCC----cCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEE
Confidence 58899999999999999999988864 222 22 355566666665433222333433 2 34566778999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
.|.+..-+.-....+ +....++.+.+.++.+++.|+ .+..+.. . .+ ..+.+++.++++.+.+.|++.
T Consensus 123 ~ISlds~~~e~~~~i--~~~~~~~~vl~~i~~~~~~g~~~v~i~~v--v-~~---g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 123 NVSLDSLDPERFKAI--TGRDRLDQVLAGIDAALAAGLTPVKVNAV--L-MK---GVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred EEEeccCCHHHhccC--CCCCCHHHHHHHHHHHHHCCCCcEEEEEE--E-EC---CCCHHHHHHHHHHHHhCCCeE
Confidence 887644222111122 222456777788899999998 6654332 2 11 134578888888888999863
No 179
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.44 E-value=2 Score=43.79 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh---ccCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN---VEGARFPVLTPNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~n~~~ie~a~~~Gv~~v 189 (398)
=+.++.+++|+.+.+.|+..+--|+|- +|...-.+. ++-+..+++ -.+..+..=+.+..+++.+.+. +|.+
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~l 188 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVI 188 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeE
Confidence 367888999999999999999988764 222111121 333444443 2344444434577888888887 7888
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
.|-... +. + .++++++-+.|..|- +. .+. .+++++...++.+.+.|-+.|.|+
T Consensus 189 qIga~~----------~~------n-~~LL~~va~t~kPVl--lk-------~G~~~t~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 189 QVGARN----------MQ------N-FSLLKKVGAQDKPVL--LK-------RGMAATIDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred EECccc----------cc------C-HHHHHHHHccCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 885331 11 1 134566666788875 33 122 389999999999999999988888
Q ss_pred cC-----c-CcC-CHHHHHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCC
Q 015894 269 DT-----I-GVG-TPGTVIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 269 DT-----~-G~~-~P~~v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~g 336 (398)
.. . ++- .-.++. .+..+++.+ ..|+-+ |.=-...+..+.+++|+.+||+ +|+.=.. |-
T Consensus 243 erG~rtf~s~y~~~~~dl~-ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~--------pd 312 (352)
T PRK13396 243 ERGIRTFDRQYTRNTLDLS-VIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN--------PA 312 (352)
T ss_pred ecCCccCcCCCCCCCcCHH-HHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC--------cc
Confidence 75 2 221 112222 244555554 345633 3223344456899999999999 7775433 11
Q ss_pred CCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894 337 ASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI 385 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi 385 (398)
++ .+ += - .-+ +.-++.+|.+-.+.+.+.+|....+..++
T Consensus 313 ~A--ls--D~---~--qsl-~p~~~~~l~~~i~~i~~~~g~~~~~~~~~ 351 (352)
T PRK13396 313 KA--LS--DG---P--QSL-TPDRFDRLMQELAVIGKTVGRWPQPAAAL 351 (352)
T ss_pred cC--CC--hh---h--hcC-CHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence 22 11 11 0 011 12334555666666677777766665544
No 180
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.15 Score=50.18 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCC-HHHHHHHHHHHHhhCCC
Q 015894 216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGT-PGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~-P~~v~~lv~~l~~~~p~ 292 (398)
+++.+.||+.|+-|- .+.+ .+.+.+..+.+.+.+.+... |.+... .-++. -..+..++..+.+.+|
T Consensus 7 ~~ll~~Ake~~yAvp-AfN~---------~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~- 75 (286)
T COG0191 7 KELLDKAKENGYAVP-AFNI---------NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG- 75 (286)
T ss_pred HHHHHHHHHcCCcee-eeee---------cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-
Confidence 677889999999774 2321 35788999999999998874 444332 22333 3678888888888888
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
+|+.+| -|.|....-...|+++|.+ ++|+|...+=| |. -+.+++...+.+|+
T Consensus 76 vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE---------Ni~~tkevv~~ah~~gv 130 (286)
T COG0191 76 VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE---------NIAITKEVVEFAHAYGV 130 (286)
T ss_pred CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH---------HHHHHHHHHHHHHHcCC
Confidence 577665 5888899999999999997 77999999888 76 56778887774443
No 181
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.40 E-value=3.6 Score=41.84 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC--CC---------HHHHHHHHHhc---cCCcEEEEe---CC---
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL--AD---------AKDVMAAIQNV---EGARFPVLT---PN--- 174 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D---------~~~v~~~i~~~---~~~~l~~l~---~n--- 174 (398)
.+..+....++++-.+++-+.|=-.+...-++.+.. .+ ...+...++.. -++.+.... .+
T Consensus 23 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~ 102 (345)
T cd00946 23 CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLL 102 (345)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccc
Confidence 567888888999999999997765544321111100 00 00122222211 133333332 24
Q ss_pred ----------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--
Q 015894 175 ----------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-- 242 (398)
Q Consensus 175 ----------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-- 242 (398)
.+.+.++++.|...|.+=.| ..+.+|.++.-++++++|+..|+.|++.|-.+-|.++.
T Consensus 103 ~~~~~~~~a~~~~~~~a~~~GftSVMiDgS----------~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~ 172 (345)
T cd00946 103 PWFDGLLEADEEYFKQHGEPLFSSHMLDLS----------EEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVD 172 (345)
T ss_pred hhhHHHHHHHHHHHHHhccCCCceEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcc
Confidence 22234455778888855222 23678999999999999999999999888776444332
Q ss_pred --------CCCCHHHHHHHHHHHHh-CCCCE--EEEccCcCcC---CHHHHHHHHHHH----HhhCC-----CCeEEEEe
Q 015894 243 --------GMVPPSKVAYVSKQLYD-MGCSE--ISLGDTIGVG---TPGTVIPMLEAV----LDAVP-----VDKLAVHF 299 (398)
Q Consensus 243 --------~r~~~~~l~~~a~~l~~-~Gad~--I~L~DT~G~~---~P~~v~~lv~~l----~~~~p-----~~~l~~H~ 299 (398)
.-++|+...+++++.-. .|+|. +.+.-.=|.- .|.==.++++.+ ++.++ ++||.+|+
T Consensus 173 ~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG 252 (345)
T cd00946 173 NSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG 252 (345)
T ss_pred cccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC
Confidence 13788888888876533 47775 3444444443 232233344444 65553 35777776
Q ss_pred CCccchHHHHHHHHHHhCCCEEeec
Q 015894 300 HDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 300 Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
= -|..-.....|++.|+.-|+..
T Consensus 253 g--SG~~~e~i~kai~~GI~KiNi~ 275 (345)
T cd00946 253 G--SGSTKEEIREAISYGVVKMNID 275 (345)
T ss_pred C--CCCCHHHHHHHHHcCCeeEEeC
Confidence 4 5888888999999999866543
No 182
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=95.33 E-value=0.92 Score=44.27 Aligned_cols=201 Identities=16% Similarity=0.168 Sum_probs=123.3
Q ss_pred cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEEEe-
Q 015894 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVS--SGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPVLT- 172 (398)
Q Consensus 98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~--aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~l~- 172 (398)
+.++|-|+ .....+.++..++++.-.+ .|+..+-+ +|.|+| ...+.++. .+++++.+.+
T Consensus 11 ~~~ID~Tl------L~p~~T~~~I~~lc~eA~~~~~~faaVcV----~P~~v~------~a~~~L~~~~~~~vkv~tVig 74 (257)
T PRK05283 11 LSLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLREQGTPEIRIATVTN 74 (257)
T ss_pred HHHhcccC------CCCCCCHHHHHHHHHHHHhcCCCeeEEEE----CHHHHH------HHHHHhcccCCCCCeEEEEec
Confidence 44667666 3346788888888888887 57776665 444432 22333332 1146766554
Q ss_pred -CC--------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC
Q 015894 173 -PN--------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG 243 (398)
Q Consensus 173 -~n--------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~ 243 (398)
|. ....+.|++.|+++|.+.+..+... .-..+...+.+..+++.+.. |..+-+-|.. +
T Consensus 75 FP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk-----~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt-------~ 141 (257)
T PRK05283 75 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFELVKACKEACAA-NVLLKVIIET-------G 141 (257)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHh-----CCcHHHHHHHHHHHHHHhCC-CceEEEEEec-------c
Confidence 31 2356788999999999998876542 22466677777777777642 4545443431 2
Q ss_pred CCCHH-HHHHHHHHHHhCCCCEEEEccCcC----cCCHHHHHHHHHHHHhh-CCCCeEEEEe---CCccchHHHHHHHHH
Q 015894 244 MVPPS-KVAYVSKQLYDMGCSEISLGDTIG----VGTPGTVIPMLEAVLDA-VPVDKLAVHF---HDTYGQALSNILASL 314 (398)
Q Consensus 244 r~~~~-~l~~~a~~l~~~Gad~I~L~DT~G----~~~P~~v~~lv~~l~~~-~p~~~l~~H~---Hnd~GlA~ANalaAl 314 (398)
..+.+ .....++.+.++|+|-| +=+.| ..+|++++-+.+.+++. .+. .+++.. =.|+..|.+-..++-
T Consensus 142 ~L~~ee~i~~a~~~a~~aGADFV--KTSTGf~~~gAt~edv~lm~~~i~~~~~~~-~vgIKAsGGIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 142 ELKDEALIRKASEIAIKAGADFI--KTSTGKVPVNATLEAARIMLEVIRDMGVAK-TVGFKPAGGVRTAEDAAQYLALAD 218 (257)
T ss_pred ccCCHHHHHHHHHHHHHhCCCEE--EcCCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEccCCCCCHHHHHHHHHHHH
Confidence 34445 58889999999999955 34444 46788888877777542 121 244433 244545544443332
Q ss_pred -HhCCCEEeeccccCCC
Q 015894 315 -QMGISTVDSSVSGLGG 330 (398)
Q Consensus 315 -~aGa~~VD~Sv~GlGe 330 (398)
..|.++++.-..=+|.
T Consensus 219 ~~lg~~~~~~~~fR~G~ 235 (257)
T PRK05283 219 EILGADWADARHFRFGA 235 (257)
T ss_pred HHhChhhcCcccEeeeh
Confidence 3677888877776665
No 183
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.31 E-value=2.2 Score=43.22 Aligned_cols=193 Identities=16% Similarity=0.124 Sum_probs=119.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcc--------cCCCC----HHHHHHHHHhc-c--CCcEEEEe---C--
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWV--------PQLAD----AKDVMAAIQNV-E--GARFPVLT---P-- 173 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~--------p~~~D----~~~v~~~i~~~-~--~~~l~~l~---~-- 173 (398)
.+..+....++++-.+.+.+.|=-.+.. ..++. ||- | .+.+...++.. + ++.+.... .
T Consensus 20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~ 98 (340)
T cd00453 20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG-AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKK 98 (340)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccch-hhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 4678888889999999999988776541 11111 110 1 23333333321 2 34444432 4
Q ss_pred CHhhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894 174 NLKGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE 242 (398)
Q Consensus 174 n~~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~ 242 (398)
+.+.++.++++| ...|.+=.| ..+.++.++..++++++|+..|+.|++.|-..-|.++.
T Consensus 99 ~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS----------~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~ 168 (340)
T cd00453 99 LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLS----------EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDG 168 (340)
T ss_pred CHHHHHHHHHcCCccccccCCCCceeEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCC
Confidence 557789999999 666665222 23577899999999999999999999888876554433
Q ss_pred ----------CCCCHHHHHHHHHHHHhCC----CCE--EEEccCcCcC---CHHHHHHHHHHHHhhC--------CCCeE
Q 015894 243 ----------GMVPPSKVAYVSKQLYDMG----CSE--ISLGDTIGVG---TPGTVIPMLEAVLDAV--------PVDKL 295 (398)
Q Consensus 243 ----------~r~~~~~l~~~a~~l~~~G----ad~--I~L~DT~G~~---~P~~v~~lv~~l~~~~--------p~~~l 295 (398)
.-++|+...++++ +.| +|. +.+.-.=|.- .|.==.++++.+++.+ |++||
T Consensus 169 ~~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pL 245 (340)
T cd00453 169 VDNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNF 245 (340)
T ss_pred cccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCce
Confidence 0356887777765 445 554 3333333332 2322233444444444 25678
Q ss_pred EEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 296 AVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 296 ~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.+|+= -|..--....|+..|+.-|+.
T Consensus 246 VlHGg--SG~~~e~~~~ai~~Gi~KiNi 271 (340)
T cd00453 246 VFHGG--SGSTAQEIKDSVSYGVVKMNI 271 (340)
T ss_pred EEeCC--CCCCHHHHHHHHHcCCeEEEc
Confidence 87764 566667788889999876654
No 184
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.28 E-value=0.79 Score=45.27 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=130.3
Q ss_pred HHHHHHHhcCCCEEEEecCC--CCCccc--CCCCHHHHHHHHHhccC-CcEEEEeC---------C-HhhHHHHHHcCCC
Q 015894 123 ELIKLLVSSGLAVVEATSFV--SPKWVP--QLADAKDVMAAIQNVEG-ARFPVLTP---------N-LKGFEAAVAAGAK 187 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~--~~~~~p--~~~D~~~v~~~i~~~~~-~~l~~l~~---------n-~~~ie~a~~~Gv~ 187 (398)
--+..+.++|++.+=+++.. ..-..| .....++++..++++.+ +.+.+++- | .+-++.+.++|+-
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~a 108 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAA 108 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcc
Confidence 34677899999999987531 122223 12346788888886543 45555552 1 2346778889999
Q ss_pred EEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 188 EVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 188 ~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
.|+|-+.+-+- |+..+-=.+.+++.++++.+++.+++..+.+.. =..+++. + -.+...+=++...++|+|.
T Consensus 109 gi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~AI~Ra~AY~eAGAD~ 182 (289)
T COG2513 109 GIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDDAIERAQAYVEAGADA 182 (289)
T ss_pred eeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHHHHHHHHHHHHcCCcE
Confidence 99998876552 211222236788888887777766653333221 1111110 1 1355555566777899999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhCCC-CeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPV-DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT 343 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~-~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l 343 (398)
|+.. |.-.+++++.+.++++ .|. ..+.-+++. .+-..--|+ ++|+++|-..+..+ |+.+..+
T Consensus 183 if~~---al~~~e~i~~f~~av~--~pl~~N~t~~g~t--p~~~~~~L~--~~Gv~~V~~~~~~~--------raa~~a~ 245 (289)
T COG2513 183 IFPE---ALTDLEEIRAFAEAVP--VPLPANITEFGKT--PLLTVAELA--ELGVKRVSYGLTAF--------RAALKAA 245 (289)
T ss_pred Eccc---cCCCHHHHHHHHHhcC--CCeeeEeeccCCC--CCcCHHHHH--hcCceEEEECcHHH--------HHHHHHH
Confidence 9865 4566888888887776 442 123333333 333333333 57999997776666 7889999
Q ss_pred HHHHHHHHhCCC
Q 015894 344 EDVVYMLNGLGV 355 (398)
Q Consensus 344 E~vv~~L~~~Gi 355 (398)
+.++..+.+.|.
T Consensus 246 ~~~~~~i~~~gt 257 (289)
T COG2513 246 EQAAREIRREGT 257 (289)
T ss_pred HHHHHHHHhcCc
Confidence 999998887663
No 185
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.26 E-value=1.5 Score=42.83 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~ 190 (398)
+.++.+++|+.|.+.|+.....+.+- +|... ....++-++.+++. .++.+..=..+...++.+.+. ++.+.
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~--~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk 113 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSF--QGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ 113 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhccCceecCCCCCccc--cccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE
Confidence 67888999999999998865544332 11100 11123333444422 344444434577788888887 88888
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV-PPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~-~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
|..... +. .++++++.+.|.+|. ++ .+.. +++++...++.+.+.|.+.|.|+.
T Consensus 114 I~s~~~----------~n-------~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 114 IGARNM----------QN-------FELLKEVGKQGKPVL--LK-------RGMGNTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred ECcccc----------cC-------HHHHHHHhcCCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 743311 11 135566677898875 33 1223 799999999999999999888887
Q ss_pred C-c-Cc-CCHHHHH--HHHHHHHhhCCCCeEEE-EeCC--ccchHHHHHHHHHHhCCC--EEeecc
Q 015894 270 T-I-GV-GTPGTVI--PMLEAVLDAVPVDKLAV-HFHD--TYGQALSNILASLQMGIS--TVDSSV 325 (398)
Q Consensus 270 T-~-G~-~~P~~v~--~lv~~l~~~~p~~~l~~-H~Hn--d~GlA~ANalaAl~aGa~--~VD~Sv 325 (398)
. + .+ -.|.... ..+..+++.++ .||++ =.|- +.-+..+.+++|+.+||+ +|+.-.
T Consensus 168 rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 168 RGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred CCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 4 2 33 2232222 23455665553 57888 4453 234556778899999999 566443
No 186
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.24 E-value=1.8 Score=42.09 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEE
Q 015894 114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEV 189 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v 189 (398)
+.-+..+-.++++...+.|.+.|-+= ..+++.. .+.+ .+..+++..+ +.++.. ..-+++.+.++|+|.|
T Consensus 65 ~i~~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~~-~l~~v~~~v~--iPvl~kdfi~~~~qi~~a~~~GAD~V 137 (260)
T PRK00278 65 VIREDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSLE-YLRAARAAVS--LPVLRKDFIIDPYQIYEARAAGADAI 137 (260)
T ss_pred ccCCCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCHH-HHHHHHHhcC--CCEEeeeecCCHHHHHHHHHcCCCEE
Confidence 33344456789999999999998652 1222221 2233 3444554323 334433 3447899999999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
.+-...=+ .+.+.+++++++++|+.+.+.+. +.+++ +++.++|++.|.+-.
T Consensus 138 lLi~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~----~~A~~~gadiIgin~ 188 (260)
T PRK00278 138 LLIVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL----ERALKLGAPLIGINN 188 (260)
T ss_pred EEEeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH----HHHHHcCCCEEEECC
Confidence 98765311 14567889999999998764322 34443 345678999998754
Q ss_pred -CcCcCCHHHHHHHHHHHHhhCCC-CeEEE--EeCCccchHHHHHHHHHHhCCCEE
Q 015894 270 -TIGVGTPGTVIPMLEAVLDAVPV-DKLAV--HFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 270 -T~G~~~P~~v~~lv~~l~~~~p~-~~l~~--H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
......|. .+.+..+.+.+|. .++-. ..+ ...++..+.++|++.|
T Consensus 189 rdl~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 189 RNLKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV 237 (260)
T ss_pred CCcccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence 11122222 2233444444553 12222 222 2567778888999866
No 187
>PRK06852 aldolase; Validated
Probab=95.23 E-value=1.4 Score=44.02 Aligned_cols=131 Identities=15% Similarity=0.069 Sum_probs=88.4
Q ss_pred hHHHHHHcC------CCEE--EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894 177 GFEAAVAAG------AKEV--AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS 248 (398)
Q Consensus 177 ~ie~a~~~G------v~~v--~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~ 248 (398)
.++.|++.| ++-| +++.. |+. ..+.++.+.++++.|+++|+.+-+ +++.-|.......+++
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~ 188 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH 188 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence 478899988 6654 44444 332 246889999999999999999764 4555554334446789
Q ss_pred HHHHHHHHHHhCCCCEEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCC--ccchHHHHHHHHHH-hCCCEEe
Q 015894 249 KVAYVSKQLYDMGCSEISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHD--TYGQALSNILASLQ-MGISTVD 322 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn--d~GlA~ANalaAl~-aGa~~VD 322 (398)
.+...++...++|||.|-..=|. |-..|+.+.+.+... -| +|+-+=+=- +.--.+..+..|++ +|+..|.
T Consensus 189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~-vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GR-TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CC-CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999998766542 224677887766642 12 244442211 22235777888888 9998664
No 188
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.15 E-value=3.4 Score=40.16 Aligned_cols=200 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHH----HHhcc---CCcEEEE
Q 015894 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAA----IQNVE---GARFPVL 171 (398)
Q Consensus 100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~----i~~~~---~~~l~~l 171 (398)
|+-+|. |-..--|..++.+..++.+..+.+.|.+.|++|.-.. |..-+ -+.++.++. ++.+. +..++.=
T Consensus 6 IlN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~--i~~~~E~~rl~~~v~~i~~~~~~plSID 82 (257)
T cd00739 6 ILNVTP-DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADP--VSVEEELERVIPVLEALRGELDVLISVD 82 (257)
T ss_pred EEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCC--CCHHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence 444444 4444434458899999999999999999999996432 33211 233333322 33222 3443333
Q ss_pred eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC----C--
Q 015894 172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM----V-- 245 (398)
Q Consensus 172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r----~-- 245 (398)
+.+.+-++.|++.|++.|.= +|- .+-+ .++++.++++|..+. ++..-|.|.... +
T Consensus 83 T~~~~v~e~al~~G~~iINd---isg------~~~~--------~~~~~l~~~~~~~vV--~m~~~g~p~~~~~~~~~~~ 143 (257)
T cd00739 83 TFRAEVARAALEAGADIIND---VSG------GSDD--------PAMLEVAAEYGAPLV--LMHMRGTPKTMQENPYYED 143 (257)
T ss_pred CCCHHHHHHHHHhCCCEEEe---CCC------CCCC--------hHHHHHHHHcCCCEE--EECCCCCCcccccCCCccc
Confidence 46778889999999886652 111 0000 234566778887765 343222221100 0
Q ss_pred ----CHHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHH---hh-CCCCeEEE------------EeCCc
Q 015894 246 ----PPSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVL---DA-VPVDKLAV------------HFHDT 302 (398)
Q Consensus 246 ----~~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~---~~-~p~~~l~~------------H~Hnd 302 (398)
-..++.+.++.+.++|++ .|.+==-+|.. ++.+-.++++.++ +. +|. -+++ ..++.
T Consensus 144 ~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r 222 (257)
T cd00739 144 VVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDR 222 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCcccc
Confidence 013455666778889985 45442222332 2444455555554 21 232 1332 23455
Q ss_pred cchHHHHHHHHHHhCCCEEe
Q 015894 303 YGQALSNILASLQMGISTVD 322 (398)
Q Consensus 303 ~GlA~ANalaAl~aGa~~VD 322 (398)
.+--++.+..|++.||++|=
T Consensus 223 ~~~t~~~~~~~~~~Ga~iiR 242 (257)
T cd00739 223 DWGTLALSALAAANGADIVR 242 (257)
T ss_pred chhHHHHHHHHHHcCCCEEE
Confidence 55566666777888888763
No 189
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.12 E-value=0.95 Score=45.01 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=122.8
Q ss_pred HHHHHHhcCCCEEEEec-CCC--CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------C----HhhHHHHHHcCCC
Q 015894 124 LIKLLVSSGLAVVEATS-FVS--PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------N----LKGFEAAVAAGAK 187 (398)
Q Consensus 124 ia~~L~~aGv~~IEvG~-~~~--~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n----~~~ie~a~~~Gv~ 187 (398)
=++...++|++.+=+++ ..+ ...+|. +-+.++++..++.+.+ +.+.+++- + .+-+++..++|+.
T Consensus 28 SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 28 SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIV 107 (294)
T ss_pred HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCe
Confidence 35677888999998743 221 122232 2356777777775432 34444442 1 1236777889999
Q ss_pred EEEEeccCchHH---HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 188 EVAIFASASESF---SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 188 ~v~i~~~~Sd~~---~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
.|+|-+.+.+-+ ...+-=.+.++..++++.+.+..++-.+.+.+ =+.++ .....+..++-++...++|||.
T Consensus 108 gi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~A-RTDa~-----~~~g~deaI~Ra~aY~eAGAD~ 181 (294)
T TIGR02319 108 GYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIA-RTDAR-----ESFGLDEAIRRSREYVAAGADC 181 (294)
T ss_pred EEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEE-Eeccc-----ccCCHHHHHHHHHHHHHhCCCE
Confidence 999998865411 11111136788888886665544332222211 01111 1124566777788888999999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATE 344 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE 344 (398)
|.+. |.-+++++..+.+.+. .|. .+-+-......+= +.-..-++|+++|-.....+ ++-..++.
T Consensus 182 ifi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~ 245 (294)
T TIGR02319 182 IFLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW--------MAAASVLR 245 (294)
T ss_pred EEec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH--------HHHHHHHH
Confidence 9995 6778888777776653 231 1233332222221 23344467999988777766 45577788
Q ss_pred HHHHHHHhCCC
Q 015894 345 DVVYMLNGLGV 355 (398)
Q Consensus 345 ~vv~~L~~~Gi 355 (398)
+.+..|++.|-
T Consensus 246 ~~~~~l~~~G~ 256 (294)
T TIGR02319 246 KLFTELREAGT 256 (294)
T ss_pred HHHHHHHHcCC
Confidence 88888876553
No 190
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.12 E-value=1.2 Score=45.32 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred hHHHHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC----CCCHHHH
Q 015894 177 GFEAAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG----MVPPSKV 250 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~----r~~~~~l 250 (398)
.++.|++.|++-|.+ +.. |+. ..+.++.+.++++.|+++|+.+.+ +++.-|..... .++++.+
T Consensus 151 sVedAlrLGAdAV~~tvy~G-s~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~I 219 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFG-SEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLT 219 (348)
T ss_pred cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHH
Confidence 588999999996655 443 332 236788999999999999999764 45555432222 2347899
Q ss_pred HHHHHHHHhCCCCEEEEccC
Q 015894 251 AYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT 270 (398)
...++...++|||.|-..=|
T Consensus 220 a~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 220 GQANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHHcCCEEEecCC
Confidence 99999999999998766543
No 191
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=95.12 E-value=1.3 Score=39.46 Aligned_cols=146 Identities=20% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHhcCC-----CEEEEecCCCCCcccCCCCHHHHHHHHHhcc----CCcEEEEeC----CHhhHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGL-----AVVEATSFVSPKWVPQLADAKDVMAAIQNVE----GARFPVLTP----NLKGFEAA 181 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv-----~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~----n~~~ie~a 181 (398)
..+.++..+.++.+.+.|. +.+-++... |...| .....++++.+++.. +..+...+. +.+-++..
T Consensus 29 ~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l 106 (216)
T smart00729 29 SRYLEALVREIELLAEKGEKEILVGTVFIGGGT-PTLLS-PEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL 106 (216)
T ss_pred HHHHHHHHHHHHHHHhcccCCcceeEEEECCCC-CCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHH
Confidence 4566677777777755554 333333221 11111 001355666666443 233333332 34568888
Q ss_pred HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
.+.|.+.+.+.+-..+-.....++.. ..++.+.+.++.+++.| +.+...++ .|-+ ..+.+.+.++++.+.+.
T Consensus 107 ~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~v~~~~~--~g~~---~~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 107 KEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIKVSTDLI--VGLP---GETEEDFEETLKLLKEL 179 (216)
T ss_pred HHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcceEEeEE--ecCC---CCCHHHHHHHHHHHHHc
Confidence 99999988886654322222223222 23467778888999999 77765555 3333 23678999999999999
Q ss_pred CCCEEEEcc
Q 015894 261 GCSEISLGD 269 (398)
Q Consensus 261 Gad~I~L~D 269 (398)
|++.|.+..
T Consensus 180 ~~~~i~~~~ 188 (216)
T smart00729 180 GPDRVSIFP 188 (216)
T ss_pred CCCeEEeee
Confidence 999876644
No 192
>PRK14057 epimerase; Provisional
Probab=95.09 E-value=0.57 Score=45.60 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH-hhHHHHHHcCCCEEEEe
Q 015894 118 AVVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL-KGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~-~~ie~a~~~Gv~~v~i~ 192 (398)
...-.+-++.|.+.|++.+=+ |.|+ |++.=..++++.++......+-.++.+. .-++..+++|++.|.+.
T Consensus 31 ~~~L~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H 105 (254)
T PRK14057 31 WIALHRYLQQLEALNQPLLHLDLMDGQFC-----PQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCITLQ 105 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeccCCccC-----CccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEe
Confidence 344456788889999997666 4444 4433223455555531112233445554 45788899999988875
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-------EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-------VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-------v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
.-+. ..+.++++++|++|.+ +.+.+. + +|. ++++.+.+++.. +|.|
T Consensus 106 ~Ea~----------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--l-nP~---Tp~e~i~~~l~~-----vD~V 158 (254)
T PRK14057 106 AEGD----------------IHLHHTLSWLGQQTVPVIGGEMPVIRGIS--L-CPA---TPLDVIIPILSD-----VEVI 158 (254)
T ss_pred eccc----------------cCHHHHHHHHHHcCCCcccccccceeEEE--E-CCC---CCHHHHHHHHHh-----CCEE
Confidence 4322 2234667888888874 222333 2 242 467777776643 3433
Q ss_pred EE----ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 266 SL----GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 266 ~L----~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
-+ +.-.|...=..+.+-|+.+++..+...+.+-.-=|=|.-..|+-...++||+++=+
T Consensus 159 LvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 159 QLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVS 220 (254)
T ss_pred EEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence 22 33445555566666777777655432233334447788888999999999997644
No 193
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=95.03 E-value=1.1 Score=44.81 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=82.2
Q ss_pred CHHHHHH-HHHHHHhcCCCE-------EEEecCCCCCcccCCCCHHHHHHHHHhccCC-cEEEEeC----CHhhHHHHHH
Q 015894 117 PAVVKVE-LIKLLVSSGLAV-------VEATSFVSPKWVPQLADAKDVMAAIQNVEGA-RFPVLTP----NLKGFEAAVA 183 (398)
Q Consensus 117 ~~~~k~~-ia~~L~~aGv~~-------IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~-~l~~l~~----n~~~ie~a~~ 183 (398)
+.+...+ |-..+.+.+.+. +--|+|..|..+| .....++++.++..+.. ++.+-++ +.+.++...+
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~-~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~ 125 (313)
T TIGR01210 47 TEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP-KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRK 125 (313)
T ss_pred ChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC-HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHH
Confidence 4444444 444445555431 2123454444443 11123444444443322 3344343 2456777888
Q ss_pred cCCC-EEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhC
Q 015894 184 AGAK-EVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDM 260 (398)
Q Consensus 184 ~Gv~-~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~ 260 (398)
+|+. .|.+- =+.||.-++..+|+.. ..+.+.++++.++++|+.+.++++ +|.|..+. -+.+.+.+.++.+.++
T Consensus 126 aG~~~~v~iG~ES~~d~~L~~~inKg~--t~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~~ti~~~~~l 201 (313)
T TIGR01210 126 IGVNVEVAVGLETANDRIREKSINKGS--TFEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMISSIRKCIPV 201 (313)
T ss_pred cCCCEEEEEecCcCCHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHHHHHHHHHhc
Confidence 9987 67773 3456655533344422 234556778899999999988887 67675432 2356666678888888
Q ss_pred CCCEEEEcc
Q 015894 261 GCSEISLGD 269 (398)
Q Consensus 261 Gad~I~L~D 269 (398)
+ +.|.+--
T Consensus 202 ~-~~vs~~~ 209 (313)
T TIGR01210 202 T-DTVSINP 209 (313)
T ss_pred C-CcEEEEC
Confidence 8 7776543
No 194
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=95.02 E-value=0.88 Score=47.81 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC---CHhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP---NLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---n~~~ie~a~~~Gv~~v~ 190 (398)
.+.+..++=++.+.+. |++.|-++- ..+........++.+.+++. +..+.+.++ +.+-++...++|+..|.
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~D---d~f~~~~~~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDD---DTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeC---CCCCCCHHHHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 4666666655555543 788776641 11000001123444444432 344444333 34557888899999888
Q ss_pred Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 191 IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 191 i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
+-+ +.|+-.++ .+++.. ..+.+.++++.++++|+.+.++++ +|.|.+ +++.+.+.++.+.+.+.+.+.+
T Consensus 303 iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~~-- 372 (472)
T TIGR03471 303 VGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQV-- 372 (472)
T ss_pred EcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCceee--
Confidence 744 44444333 344431 244566788999999999886666 677765 5677888888888888887653
Q ss_pred CcCcCCHHHHHHHHHHHHh
Q 015894 270 TIGVGTPGTVIPMLEAVLD 288 (398)
Q Consensus 270 T~G~~~P~~v~~lv~~l~~ 288 (398)
..++|.-=..+.+.+++
T Consensus 373 --~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 373 --SLAAPYPGTELYDQAKQ 389 (472)
T ss_pred --eecccCCCcHHHHHHHH
Confidence 45666544455555554
No 195
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=94.98 E-value=0.45 Score=45.82 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=93.0
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
+|.+-+....+-.+ +++ -+++.++.|+++|+.|. +|. ..+.......+.++.+.+.++|.+.
T Consensus 25 ID~lKfg~Gt~~l~--------~~~---~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~ 87 (237)
T TIGR03849 25 ITFVKFGWGTSALI--------DRD---IVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELGFEA 87 (237)
T ss_pred eeeEEecCceEeec--------cHH---HHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcCCCE
Confidence 56666655544432 222 35678999999999885 221 1111122345566777888999999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhh-C-CCCeEEEEeC-----CccchHHHHHHHHHHhCCCE--Eeeccc----cCCCC
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDA-V-PVDKLAVHFH-----DTYGQALSNILASLQMGIST--VDSSVS----GLGGC 331 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~-~-p~~~l~~H~H-----nd~GlA~ANalaAl~aGa~~--VD~Sv~----GlGec 331 (398)
|-|.|.+--+.+.+-.++|+.++++ + +-..++.... -+...-+-.+-..++|||+. |++-=. |+=+
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~- 166 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFD- 166 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeC-
Confidence 9999999999999999999999965 2 1112454443 12233455666779999994 466433 4444
Q ss_pred CCCCCCCCCccHHHHHHHHHhC
Q 015894 332 PYAKGASGNVATEDVVYMLNGL 353 (398)
Q Consensus 332 p~a~graGNa~lE~vv~~L~~~ 353 (398)
..|+.-...+-..++..
T Consensus 167 -----~~g~~r~d~v~~i~~~l 183 (237)
T TIGR03849 167 -----EKGNVKEDELDVLAENV 183 (237)
T ss_pred -----CCCCCchHHHHHHHhhC
Confidence 56777766555555433
No 196
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=94.97 E-value=1.1 Score=45.42 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHhcC---CCEEEEecCCCCCcccCCCCHHHHHHHHHh-c---cCCcEEEEe-C---CHhhHHHHHHc
Q 015894 116 VPAVVKVELIKLLVSSG---LAVVEATSFVSPKWVPQLADAKDVMAAIQN-V---EGARFPVLT-P---NLKGFEAAVAA 184 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aG---v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~---~~~~l~~l~-~---n~~~ie~a~~~ 184 (398)
+......+|...+...| ++.|=+|-. .|..++ ..+.+++++.+++ . ++..+++-+ + +.+.++...++
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~ 109 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLS-VEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGA 109 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCC-HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence 44555556665555556 556655432 121111 0223445555543 1 345555544 2 34567888899
Q ss_pred CCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 185 GAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 185 Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
|+.+|.+-+- .++-.. ..+|+. ...+.+.++++.+++.|+. +.+.++ +|.|.. +.+.+.+.++.+.++|+
T Consensus 110 Gv~risiGvqS~~~~~l-~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 110 GINRLSLGVQSFRDDKL-LFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKEELKLAKELPI 181 (360)
T ss_pred CCCEEEEecccCChHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHHHHHHHHccCC
Confidence 9999988655 444322 334431 2244556678899999996 665555 666654 57888888889999999
Q ss_pred CEEEE
Q 015894 263 SEISL 267 (398)
Q Consensus 263 d~I~L 267 (398)
+.|.+
T Consensus 182 ~~is~ 186 (360)
T TIGR00539 182 NHLSA 186 (360)
T ss_pred CEEEe
Confidence 88764
No 197
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.95 E-value=2.1 Score=41.45 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCC--HHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLAD--AKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D--~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~ 188 (398)
..+.+..++.+..+.+.|.+.|++|.... |..-|.-.+ .+.+...++.+ .+..++.=+.+.+-++.+++.|++.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~i 99 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADI 99 (258)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCE
Confidence 46889999999999999999999996543 432221111 12233344433 2444444456788889999999775
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCC----HHHHHHHHHHHH
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVP----PSKVAYVSKQLY 258 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~----~~~l~~~a~~l~ 258 (398)
|.= +|- .+.+ .++++.++++|..+. ++..-+.+.. .... .+++.+.++.+.
T Consensus 100 INd---is~------~~~~--------~~~~~l~~~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 160 (258)
T cd00423 100 IND---VSG------GRGD--------PEMAPLAAEYGAPVV--LMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT 160 (258)
T ss_pred EEe---CCC------CCCC--------hHHHHHHHHcCCCEE--EECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence 542 221 0101 244567788887765 3322111110 0001 356667777888
Q ss_pred hCCCC--EEEE
Q 015894 259 DMGCS--EISL 267 (398)
Q Consensus 259 ~~Gad--~I~L 267 (398)
++|++ .|.+
T Consensus 161 ~~Gi~~~~Iil 171 (258)
T cd00423 161 EAGIPPEDIIL 171 (258)
T ss_pred HcCCCHHHEEE
Confidence 89963 4544
No 198
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.93 E-value=0.11 Score=54.89 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G 327 (398)
+...+.++.+.+.|++.|.+ |++- ..|..+.++++.+++.+|++++-. ..+.-...+..++++||+.|++.+.|
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence 34557788899999999887 7777 888999999999999999877776 55677788888999999999976654
Q ss_pred CCCC
Q 015894 328 LGGC 331 (398)
Q Consensus 328 lGec 331 (398)
=.-|
T Consensus 298 Gs~~ 301 (475)
T TIGR01303 298 GAMC 301 (475)
T ss_pred Cccc
Confidence 4444
No 199
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=94.92 E-value=1.3 Score=43.52 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=93.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHh-ccCCcEEEEeCCH----hhHHHHHH
Q 015894 112 EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQN-VEGARFPVLTPNL----KGFEAAVA 183 (398)
Q Consensus 112 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~-~~~~~l~~l~~n~----~~ie~a~~ 183 (398)
....++.++-.++|+...++|++++-+++-...+. ..+ -+.+.++.+++ .|++++-+|++.- .-++..++
T Consensus 93 ~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~ 170 (306)
T COG0320 93 RPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVAD 170 (306)
T ss_pred CCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHh
Confidence 34578999999999999999999999998654321 111 13456677774 5789999999853 34566667
Q ss_pred cCCCEE--------EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC--cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 184 AGAKEV--------AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI--PVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 184 ~Gv~~v--------~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~--~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
+|.+.+ +++-.+ --+.+.+.+| ++.+.+|+.+- ..-..||.-.| =+.+++.+.
T Consensus 171 ~~pdV~nHNvETVprL~~~V-------Rp~A~Y~~SL----~~L~~~k~~~P~i~TKSgiMlGLG------Et~~Ev~e~ 233 (306)
T COG0320 171 AGPDVFNHNVETVPRLYPRV-------RPGATYERSL----SLLERAKELGPDIPTKSGLMVGLG------ETDEEVIEV 233 (306)
T ss_pred cCcchhhcccccchhccccc-------CCCCcHHHHH----HHHHHHHHhCCCcccccceeeecC------CcHHHHHHH
Confidence 777643 232222 1234455555 45578888873 33344553232 146888899
Q ss_pred HHHHHhCCCCEEEEcc
Q 015894 254 SKQLYDMGCSEISLGD 269 (398)
Q Consensus 254 a~~l~~~Gad~I~L~D 269 (398)
.+-+.+.|+|.+.|.-
T Consensus 234 m~DLr~~gvdilTiGQ 249 (306)
T COG0320 234 MDDLRSAGVDILTIGQ 249 (306)
T ss_pred HHHHHHcCCCEEEecc
Confidence 9999999999998764
No 200
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=94.91 E-value=2.2 Score=42.16 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=78.9
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA-RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a-k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
.++.+++.|+..+.+... +. .....+.+.++.++.+.+.++.+ ++.|+.+...++.. . ..+++...+..+
T Consensus 78 ~~~e~~~~Gvt~~E~~~~--p~-~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~---~---~~~~~~~~~~~~ 148 (325)
T cd01320 78 YLEDAAADGVVYAEIRFS--PQ-LHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL---R---HLSPESAQETLE 148 (325)
T ss_pred HHHHHHHcCCEEEEEEeC--ch-hhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec---C---CCCHHHHHHHHH
Confidence 456677889977665433 21 11245778899998887777766 45688776544321 1 124566666666
Q ss_pred HHHhCCCCEEEEccCc---CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCE
Q 015894 256 QLYDMGCSEISLGDTI---GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGIST 320 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~ 320 (398)
.+..++.+.+.=.|.. ....+..+..++...++. +.++.+|+..+.+ ..+...|++ +|+++
T Consensus 149 ~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 149 LALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 6655554433223332 234677888888777764 4568888876643 234456666 78754
No 201
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.87 E-value=0.77 Score=45.44 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=119.5
Q ss_pred HHHHHhcCCCEEEEecCC-C-CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------CH----hhHHHHHHcCCCEE
Q 015894 125 IKLLVSSGLAVVEATSFV-S-PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------NL----KGFEAAVAAGAKEV 189 (398)
Q Consensus 125 a~~L~~aGv~~IEvG~~~-~-~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n~----~~ie~a~~~Gv~~v 189 (398)
++...++|++.|=++++. + ....|. +-+.+++++.++++.+ +.+.+++- +. +-++...++|+..|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi 105 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAV 105 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 456678899999997542 1 112232 2356778877775432 33444442 22 24677889999999
Q ss_pred EEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-CCCCHHHHHHHHHHHHhCCCCEE
Q 015894 190 AIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-GMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 190 ~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
+|-+.+.+- |...+-=.+.++..++++.+.+..+ +..+. |..=. |+ .....+...+=++...++|||.|
T Consensus 106 ~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~--IiART---Da~~~~g~deAI~Ra~ay~~AGAD~v 178 (285)
T TIGR02317 106 HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFV--IIART---DARAVEGLDAAIERAKAYVEAGADMI 178 (285)
T ss_pred EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEE--EEEEc---CcccccCHHHHHHHHHHHHHcCCCEE
Confidence 999887541 1111111267788888765554433 22221 11100 11 12235666666778888999999
Q ss_pred EEccCcCcCCHHHHHHHHHHHHhhCCCCeE--EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894 266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT 343 (398)
Q Consensus 266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l--~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l 343 (398)
.+. |.-+++++..+.+.+ | .|+ -+-.....++- +.-..-++|+++|-....++ ++-+.++
T Consensus 179 fi~---g~~~~e~i~~~~~~i----~-~Pl~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~~--------~aa~~a~ 240 (285)
T TIGR02317 179 FPE---ALTSLEEFRQFAKAV----K-VPLLANMTEFGKTPLF--TADELREAGYKMVIYPVTAF--------RAMNKAA 240 (285)
T ss_pred EeC---CCCCHHHHHHHHHhc----C-CCEEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHHH--------HHHHHHH
Confidence 985 556777777666554 3 234 22222221111 23344467999998776666 5567778
Q ss_pred HHHHHHHHhCCC
Q 015894 344 EDVVYMLNGLGV 355 (398)
Q Consensus 344 E~vv~~L~~~Gi 355 (398)
++.+..++..|.
T Consensus 241 ~~~~~~l~~~g~ 252 (285)
T TIGR02317 241 EAVYNEIKEHGT 252 (285)
T ss_pred HHHHHHHHHcCC
Confidence 888888876654
No 202
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.86 E-value=4 Score=39.39 Aligned_cols=138 Identities=17% Similarity=0.088 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-CCCCC-------HHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHH
Q 015894 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-EGMVP-------PSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGT 278 (398)
Q Consensus 208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-~~r~~-------~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~ 278 (398)
+++.++.+++.++.|+++|..+.. +. +.+. .+... .+.+.++++.+.++|+.. +--.+..-..++.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~-~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~ 169 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQ-LA---GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISK 169 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE-EC---CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHH
Confidence 567788899999999999988542 21 1111 01111 234455667777788742 22233334446777
Q ss_pred HHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhC---CCEEeeccccCCCCC-CCCCCCCCccHHHHHHHHH
Q 015894 279 VIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMG---ISTVDSSVSGLGGCP-YAKGASGNVATEDVVYMLN 351 (398)
Q Consensus 279 v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aG---a~~VD~Sv~GlGecp-~a~graGNa~lE~vv~~L~ 351 (398)
+.++++.+.. |.+.+.+ |.+- .|...+ .+++.. +..|+..=.--|. + ..+-+.|..+...++..|+
T Consensus 170 ~~~ll~~v~~--~~lgl~~D~~h~~~-~~~~~~---~~i~~~~~~i~~vHikD~~~~~-~~~~~~G~G~id~~~i~~~L~ 242 (283)
T PRK13209 170 ALGYAHYLNS--PWFQLYPDIGNLSA-WDNDVQ---MELQAGIGHIVAFHVKDTKPGV-FKNVPFGEGVVDFERCFKTLK 242 (283)
T ss_pred HHHHHHHhCC--CccceEeccchHHH-hcCCHH---HHHHhCcCcEEEEEeccCCCCC-CceeCCCCCccCHHHHHHHHH
Confidence 7776666532 3322222 2221 111122 233322 2345554321121 1 1122478999999999999
Q ss_pred hCCCC
Q 015894 352 GLGVR 356 (398)
Q Consensus 352 ~~Gi~ 356 (398)
+.|++
T Consensus 243 ~~gy~ 247 (283)
T PRK13209 243 QSGYC 247 (283)
T ss_pred HcCCC
Confidence 87764
No 203
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.78 E-value=3.9 Score=40.10 Aligned_cols=185 Identities=17% Similarity=0.201 Sum_probs=96.7
Q ss_pred HHHHHHHhcC-CCEEEEecCCCCCcc----cC-------------C--CCHHHHHHHHHhc---cCCcEEE-E-eCCHhh
Q 015894 123 ELIKLLVSSG-LAVVEATSFVSPKWV----PQ-------------L--ADAKDVMAAIQNV---EGARFPV-L-TPNLKG 177 (398)
Q Consensus 123 ~ia~~L~~aG-v~~IEvG~~~~~~~~----p~-------------~--~D~~~v~~~i~~~---~~~~l~~-l-~~n~~~ 177 (398)
+.+..+.+.| +..+++++....... |. + ...+.+++.++.. .+..+.+ + ..+.++
T Consensus 24 ~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~ 103 (296)
T cd04740 24 EELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGSTVEE 103 (296)
T ss_pred HHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCCHHH
Confidence 3455555566 999999864321000 11 0 0124555555422 2333333 2 234444
Q ss_pred H----HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 178 F----EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 178 i----e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
+ +++.++|+|.|-+-++ |+... +.+...-...+.+.++++.+|+. ++.|.+-+. | +.+...+
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~-cP~~~--~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~ 170 (296)
T cd04740 104 FVEVAEKLADAGADAIELNIS-CPNVK--GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVE 170 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCC--CCcccccCCHHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHH
Confidence 3 4556689998877443 22111 10111112234556667777776 677664443 1 2346778
Q ss_pred HHHHHHhCCCCEEEEccCcCcCC------------------H----HHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHH
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGT------------------P----GTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSN 309 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~------------------P----~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~AN 309 (398)
+++.+.++|+|.|.+-+|.+... + ....++++.+++.++ ++|-. +-|. -...
T Consensus 171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~----~GGI~~~~d 245 (296)
T cd04740 171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIG----VGGIASGED 245 (296)
T ss_pred HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEE----ECCCCCHHH
Confidence 89999999999998876543221 1 113356667776553 23332 1222 2366
Q ss_pred HHHHHHhCCCEEeecc
Q 015894 310 ILASLQMGISTVDSSV 325 (398)
Q Consensus 310 alaAl~aGa~~VD~Sv 325 (398)
+..++++||+.|..+-
T Consensus 246 a~~~l~~GAd~V~igr 261 (296)
T cd04740 246 ALEFLMAGASAVQVGT 261 (296)
T ss_pred HHHHHHcCCCEEEEch
Confidence 7777788888776543
No 204
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=94.74 E-value=2.3 Score=41.15 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=74.5
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.|.+.|++.|.+... +........-..+...+.+++++++|+++|+.+.. ... ..+ ...++....+++
T Consensus 100 i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l--E~~-~~~--~~~t~~~~~~li--- 169 (279)
T TIGR00542 100 IQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV--EIM-DTP--FMSSISKWLKWD--- 169 (279)
T ss_pred HHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE--eeC-CCc--hhcCHHHHHHHH---
Confidence 45667789998876421 11000000111445667778899999999997652 211 111 123444444443
Q ss_pred HhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 258 YDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 258 ~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
.+.|-+.+.+ -|+.-...-. .+....++. ..+--.++|++|..+ |. ...+|+
T Consensus 170 ~~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~------------~~---------~~~~p~--- 222 (279)
T TIGR00542 170 HYLNSPWFTLYPDIGNLSAWD--NDVQMELQL-GIDKIVAIHLKDTKP------------GQ---------FKDVPF--- 222 (279)
T ss_pred HHcCCCceEEEeCcChhhhcc--CCHHHHHHH-hhhhEEEEEeCCCCC------------Cc---------cCCcCC---
Confidence 3445444433 4653221100 012222332 222348899999754 11 011221
Q ss_pred CCCCccHHHHHHHHHhCCCC
Q 015894 337 ASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 337 raGNa~lE~vv~~L~~~Gi~ 356 (398)
+.|..+...++.+|++.|++
T Consensus 223 G~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 223 GEGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred CCCccCHHHHHHHHHHhCCc
Confidence 36789999999999987775
No 205
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=94.74 E-value=2.5 Score=40.22 Aligned_cols=204 Identities=20% Similarity=0.165 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccC-CCCHHHHHHHHHhccCCcEEEEeC--------CHh-----------hHHHHH
Q 015894 123 ELIKLLVSSGLAVVEATSFVSPKWVPQ-LADAKDVMAAIQNVEGARFPVLTP--------NLK-----------GFEAAV 182 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~-~~D~~~v~~~i~~~~~~~l~~l~~--------n~~-----------~ie~a~ 182 (398)
++++...++|++.||++... ..++ ..+.+++.+.++. -+.++..+.+ +.. -++.|.
T Consensus 19 ~~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 94 (274)
T COG1082 19 EILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAK 94 (274)
T ss_pred HHHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHH
Confidence 46667778889999998511 1111 0124455544442 2444444321 111 245677
Q ss_pred HcCCCEEEEeccCchHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894 183 AAGAKEVAIFASASESFSKS-NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 183 ~~Gv~~v~i~~~~Sd~~~~~-~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G 261 (398)
+.|++.+.++.+........ ......+...+.+.++.+.|++.|+.+....... +.....+.. +..+.+.+.+
T Consensus 95 ~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~---~~~~~~~~~---~~~~~~~~~~ 168 (274)
T COG1082 95 ELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH---PGNVVETGA---DALDLLREVD 168 (274)
T ss_pred HcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC---ccceeecCH---HHHHHHHhcC
Confidence 78999888766543322110 1122345678888889999999887765221000 111111122 2333444444
Q ss_pred CC-EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCC
Q 015894 262 CS-EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGN 340 (398)
Q Consensus 262 ad-~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGN 340 (398)
-+ .-.+-|+.=...-.. +.+..+++..+- -.++|+||..+-... .+... |. ...+| -|.
T Consensus 169 ~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~-----------~~~~~----~~-~~~pG-~G~ 228 (274)
T COG1082 169 SPNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD-----------IVNFL----GQ-HLPPG-DGD 228 (274)
T ss_pred CCceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc-----------ccCCC----cc-eeCCC-CCC
Confidence 33 335556543333322 456666665553 489999999987655 11111 32 22233 689
Q ss_pred ccHHHHHHHHHhCCCC
Q 015894 341 VATEDVVYMLNGLGVR 356 (398)
Q Consensus 341 a~lE~vv~~L~~~Gi~ 356 (398)
.+...+...|++.|++
T Consensus 229 id~~~i~~~L~~~gy~ 244 (274)
T COG1082 229 IDFKAIFSALREAGYD 244 (274)
T ss_pred cCHHHHHHHHHHcCCC
Confidence 9999999999988775
No 206
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.70 E-value=4.3 Score=46.04 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=133.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--------ccCC---CCHHHHHHHHHhcc---CCc--EEEEeCCHh
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--------VPQL---ADAKDVMAAIQNVE---GAR--FPVLTPNLK 176 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--------~p~~---~D~~~v~~~i~~~~---~~~--l~~l~~n~~ 176 (398)
...++.++.+++++...+.|+..+-+.+...|.. ...+ .+.+.+.+.++.+. +.. +..-..+..
T Consensus 99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~ 178 (843)
T PRK09234 99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWS 178 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHH
Confidence 4578999999999999999999988877655532 1100 12344444454332 111 111123567
Q ss_pred hHHHHHHcCCCEEEEeccC-chHH-Hhhh------cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894 177 GFEAAVAAGAKEVAIFASA-SESF-SKSN------INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS 248 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~-Sd~~-~~~~------~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~ 248 (398)
+++...+.|++ ..+..-. ++.+ .+.. -+++.+ ++ .++++.|+++|+++...++ +|- .+ +.+
T Consensus 179 E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~---~R-L~ti~~A~~lGi~~tsG~L--~Gi-GE---t~e 247 (843)
T PRK09234 179 ELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPA---VR-LRVLEDAGRLSVPFTTGIL--IGI-GE---TLA 247 (843)
T ss_pred HHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHH---HH-HHHHHHHHHcCCCccceEE--EEC-CC---CHH
Confidence 78888888876 3332222 3322 1111 122333 24 4789999999999887777 442 12 345
Q ss_pred HHHHHHHHHHhC-----CCCEEEE------ccCc----CcCCHHHHHHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHH
Q 015894 249 KVAYVSKQLYDM-----GCSEISL------GDTI----GVGTPGTVIPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILA 312 (398)
Q Consensus 249 ~l~~~a~~l~~~-----Gad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANala 312 (398)
+.++.+..+.++ |++.|.+ .+|- ...+|.+...+++..|-.+|.. +.+-.- |..|.. .+..
T Consensus 248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~--~~~~ 324 (843)
T PRK09234 248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGD--ECAA 324 (843)
T ss_pred HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHH--HHHH
Confidence 555555555544 5665432 2452 3477888999998888877642 333222 445544 4557
Q ss_pred HHHhCCCEEeecc--ccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 313 SLQMGISTVDSSV--SGLGGCPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 313 Al~aGa~~VD~Sv--~GlGecp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
++.+||+=+.++. .+--. +|.+. .++++++....+..|+.
T Consensus 325 ~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~ 366 (843)
T PRK09234 325 LLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT 366 (843)
T ss_pred HHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence 8999999888883 32100 00122 35789999999876653
No 207
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.68 E-value=1.9 Score=42.20 Aligned_cols=123 Identities=21% Similarity=0.196 Sum_probs=81.5
Q ss_pred hHHHHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
++|.|++.|+|-|.+ +.. |+. ..+.++++.++++.|.++|+++-+ + +.-|... ..+++.+...+
T Consensus 99 sVeeAvrlGAdAV~~~v~~G-s~~---------E~~~l~~l~~v~~ea~~~G~Plla-~-~prG~~~--~~~~~~ia~aa 164 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIG-SEY---------EHQSIKNIIQLVDAGLRYGMPVMA-V-TAVGKDM--VRDARYFSLAT 164 (264)
T ss_pred cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-E-ecCCCCc--CchHHHHHHHH
Confidence 588999999996655 433 332 246889999999999999999865 2 2222211 13566788889
Q ss_pred HHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC--ccchHHHHHHHHHHhCCCEEee
Q 015894 255 KQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD--TYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 255 ~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn--d~GlA~ANalaAl~aGa~~VD~ 323 (398)
+...++|||.|-..=| .+.+.+.+ +..|. |+-+=+=- +.--.+..+-.|+++|+..|..
T Consensus 165 RiaaELGADiVK~~y~-----~~~f~~vv----~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 165 RIAAEMGAQIIKTYYV-----EEGFERIT----AGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHcCCEEecCCC-----HHHHHHHH----HcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 9999999999876543 13344444 44442 44442211 2233688888999999987753
No 208
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.65 E-value=1.8 Score=43.87 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=86.0
Q ss_pred hHHHHHHcCCCEEEEe--ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE-eeeecCCCCCC-----CCHH
Q 015894 177 GFEAAVAAGAKEVAIF--ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL-SCVVGCPVEGM-----VPPS 248 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~--~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l-~~~fg~~~~~r-----~~~~ 248 (398)
.++.+++.|+|-|-+. ....+.. + -.++.++.+.++.+.|++.|+++...+ ++..+..+... ..|+
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~ 184 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE 184 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence 3788999999976554 3322110 0 023567788999999999999986542 43332222111 5688
Q ss_pred HHHHHHHHHHh--CCCCEEEEccCc------Cc------CCHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHH
Q 015894 249 KVAYVSKQLYD--MGCSEISLGDTI------GV------GTPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILAS 313 (398)
Q Consensus 249 ~l~~~a~~l~~--~Gad~I~L~DT~------G~------~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaA 313 (398)
.+...++.+.+ +|+|.+-+.=+. |. .+-.+..+.++.+.+..|. |+-+ =.--+...-+...-.|
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A 263 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHH
Confidence 99999999995 999987764331 11 1344455666666655543 3333 3334556677888889
Q ss_pred HHhCCC
Q 015894 314 LQMGIS 319 (398)
Q Consensus 314 l~aGa~ 319 (398)
+++|+.
T Consensus 264 ~~aGa~ 269 (340)
T PRK12858 264 CEAGAD 269 (340)
T ss_pred HHcCCC
Confidence 999993
No 209
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.61 E-value=1.3 Score=43.91 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=120.2
Q ss_pred HHHHHhcCCCEEEEecC-C--CCCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------CH----hhHHHHHHcCCCE
Q 015894 125 IKLLVSSGLAVVEATSF-V--SPKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------NL----KGFEAAVAAGAKE 188 (398)
Q Consensus 125 a~~L~~aGv~~IEvG~~-~--~~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n~----~~ie~a~~~Gv~~ 188 (398)
++...++|++.|=++++ + +....|. +-+.++++..++++.+ +.+.+++- +. +-+++..++|+.-
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag 109 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA 109 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 46678889999988653 1 1222342 2356777777776543 33444442 22 3467788899999
Q ss_pred EEEeccCchHHHhh---hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-CCCCHHHHHHHHHHHHhCCCCE
Q 015894 189 VAIFASASESFSKS---NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-GMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 189 v~i~~~~Sd~~~~~---~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|+|-+.+.+-..-+ +-=.+.++..++++.+++..+ +..+. |..=. |+ .....++..+=++...++|||.
T Consensus 110 i~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~--IiART---Da~~~~g~deAI~Ra~aY~eAGAD~ 182 (292)
T PRK11320 110 VHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFV--IMART---DALAVEGLDAAIERAQAYVEAGADM 182 (292)
T ss_pred EEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeE--EEEec---CcccccCHHHHHHHHHHHHHcCCCE
Confidence 99988765421111 111367888888866555433 33322 11100 11 1224566667788888999999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEE--EEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCcc
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLA--VHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVA 342 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~--~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~ 342 (398)
|.+. |.-++++++.+.+.+. .| +- +-.....++= +.-.--++|+++|-.....+ ++-..+
T Consensus 183 ifi~---~~~~~~~i~~~~~~~~--~P---l~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--------~aa~~a 244 (292)
T PRK11320 183 IFPE---AMTELEMYRRFADAVK--VP---ILANITEFGATPLF--TTEELASAGVAMVLYPLSAF--------RAMNKA 244 (292)
T ss_pred EEec---CCCCHHHHHHHHHhcC--CC---EEEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--------HHHHHH
Confidence 9985 4667888887777652 23 42 2211111111 12233467999987766655 455667
Q ss_pred HHHHHHHHHhCCC
Q 015894 343 TEDVVYMLNGLGV 355 (398)
Q Consensus 343 lE~vv~~L~~~Gi 355 (398)
+++++..+++.|.
T Consensus 245 ~~~~~~~l~~~g~ 257 (292)
T PRK11320 245 AENVYEAIRRDGT 257 (292)
T ss_pred HHHHHHHHHHcCC
Confidence 7777777776554
No 210
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.49 E-value=0.58 Score=46.80 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.|+-|- .+. -++.+.+..+++.+.+.+... |.+.... ..+.+..+..++..+.+..+.
T Consensus 5 ~k~lL~~A~~~~yaV~-AfN---------~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVG-AFN---------FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEE-EEE---------ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 5677888999998764 233 146789999999999999875 4443322 234456677788877777764
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG 354 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G 354 (398)
+|+.+|. |.|.-...+..|+++|.+ ++|+|-..+-+ |. -|-+++.+.+..|
T Consensus 75 VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vve~Ah~~g 128 (307)
T PRK05835 75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAHNAG 128 (307)
T ss_pred CeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence 5777654 777788999999999998 67999888877 65 5677777776443
No 211
>PRK12677 xylose isomerase; Provisional
Probab=94.48 E-value=2.2 Score=43.90 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCC---HHHHHHHHHhccCCcEEEEeCC---------------------
Q 015894 120 VKVELIKLLVSSGLAVVEATSFVS-PKWVPQLAD---AKDVMAAIQNVEGARFPVLTPN--------------------- 174 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D---~~~v~~~i~~~~~~~l~~l~~n--------------------- 174 (398)
.-.++++.+.++|++.||+..... |-..+.... .+++.+.++ -.++++.++++|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~-~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~ 110 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALD-ETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRR 110 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHH-HcCCeeEEEecCCCCCccccCCcCCCCCHHHHH
Confidence 345778888899999999864211 100010000 122222222 134555544321
Q ss_pred ------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHH----HHHHHHHHHhCCCcEEEEEee
Q 015894 175 ------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR----YRDVALAARELSIPVRGYLSC 235 (398)
Q Consensus 175 ------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~----~~~~v~~ak~~G~~v~~~l~~ 235 (398)
.+.++.|.+.|++.|.++..--.. ......+.++++++ +..+.++|+++|..|+..|..
T Consensus 111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 111 YALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 112467788999999887552100 00112344455544 457778888877555544553
No 212
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.44 E-value=0.65 Score=47.19 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcC-cCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIG-VGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G-~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.++-|-+ +. -++.+.+..+++.+.+.+... |.+..... .+....+..++..+.+..+.
T Consensus 6 ~k~lL~~A~~~~yAVgA-fN---------~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 75 (347)
T PRK09196 6 LRQLLDHAAEHGYGVPA-FN---------VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPH 75 (347)
T ss_pred HHHHHHHHHHcCceEEE-ee---------eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCC
Confidence 56778889999997752 22 146789999999999999874 55554433 33345678888888877765
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccc-------cCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVS-------GLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~-------GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
+|+.+|. |.|.....+..|+++|.+ ++|+|-. .+-+ |. -|.+++.+.+..|+
T Consensus 76 VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~~Gv 137 (347)
T PRK09196 76 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEY---------NVDVTRKVVEMAHACGV 137 (347)
T ss_pred CcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence 5777655 666778889999999998 6799987 4544 44 56667766664433
No 213
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=94.44 E-value=0.55 Score=44.53 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC--C--HhhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP--N--LKGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~--n--~~~ie~a~~~Gv~~v 189 (398)
..+.++-+++++...+. ++.||+|.|.-... --...+.+| ..|+..+.+=.- . .-..+.+.++|+|.+
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~e------G~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~ 84 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEVGTPLIKAE------GMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWV 84 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHh------hHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEE
Confidence 46778889999999999 99999997642110 112344555 346655444221 1 234678999999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG- 268 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~- 268 (398)
.+...+.+ +.+...++.|++.|..+.+.++.. .+++ +.++.+.++|++.+.+=
T Consensus 85 tV~g~A~~---------------~TI~~~i~~A~~~~~~v~iDl~~~--------~~~~---~~~~~l~~~gvd~~~~H~ 138 (217)
T COG0269 85 TVLGAADD---------------ATIKKAIKVAKEYGKEVQIDLIGV--------WDPE---QRAKWLKELGVDQVILHR 138 (217)
T ss_pred EEEecCCH---------------HHHHHHHHHHHHcCCeEEEEeecC--------CCHH---HHHHHHHHhCCCEEEEEe
Confidence 98766443 556778999999999988766532 2343 34556666999987652
Q ss_pred ----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 ----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 ----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
-+.|.--+++.-+.++.+.+ ++..+.+ +-|+-.-+.-.....|+++|
T Consensus 139 g~D~q~~G~~~~~~~l~~ik~~~~--~g~~vAV----aGGI~~~~i~~~~~~~~~iv 189 (217)
T COG0269 139 GRDAQAAGKSWGEDDLEKIKKLSD--LGAKVAV----AGGITPEDIPLFKGIGADIV 189 (217)
T ss_pred cccHhhcCCCccHHHHHHHHHhhc--cCceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence 23355444444444444433 1234554 45888888888888997755
No 214
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=94.42 E-value=7.7 Score=40.76 Aligned_cols=169 Identities=15% Similarity=0.146 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeCC---HhhHHHHHHcCCCE
Q 015894 115 IVPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTPN---LKGFEAAVAAGAKE 188 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~n---~~~ie~a~~~Gv~~ 188 (398)
.++.++.++.+..+.+. ++..|=+..+..|-.-| ...-+.+..++ ..++.++..-+-. .+.++..++.|++.
T Consensus 59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~--e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~ 136 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI--GKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH 136 (442)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc--cccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence 58899999988877654 46665554333331111 11123344444 3467665444321 35678888999999
Q ss_pred EEEeccCch--HHHhh-------h---cCCCHHHH-HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 189 VAIFASASE--SFSKS-------N---INCTIEDS-LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 189 v~i~~~~Sd--~~~~~-------~---~~~s~~~~-l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
|.+.+...+ .|.+. + .+.+.... +++..+.++.+++.|+.|.++.... | + .+.+.+.++++
T Consensus 137 V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlI---p--G-iND~~i~~l~~ 210 (442)
T TIGR01290 137 VTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLI---P--G-INDEHLVEVSK 210 (442)
T ss_pred EEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEee---C--C-cCHHHHHHHHH
Confidence 988766544 33221 0 12222232 5666777888889999876544432 2 2 34478889999
Q ss_pred HHHhCCCCEEEE------c--cCc------CcCCHHHHHHHHHHHHhhCC
Q 015894 256 QLYDMGCSEISL------G--DTI------GVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 256 ~l~~~Gad~I~L------~--DT~------G~~~P~~v~~lv~~l~~~~p 291 (398)
.+.+.|++.+.| + ++. -..++.++..+-+.+...+|
T Consensus 211 ~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 211 QVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 999999986665 2 111 12345566666665555444
No 215
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.42 E-value=5 Score=38.54 Aligned_cols=204 Identities=16% Similarity=0.113 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCC-CcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEecc
Q 015894 118 AVVKVELIKLLVSSGLAVVEATSFVSP-KWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFAS 194 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~-~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~ 194 (398)
..+-.++++.+.+.|++.|=+.-.... ... ....++++.+.+..++++.+- +++.++++.+++.|++.|.+-..
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~ 105 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA 105 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence 345678999999999988777543221 111 112334444443334444443 36889999999999999866322
Q ss_pred CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEee-----------eecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 195 ASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSC-----------VVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~-----------~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
.+ +..+.+.+ .++..|- .+.+.+-+ ....+. ..+.....++++++.+.|+
T Consensus 106 ---~l----------~~p~~~~e---i~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~g~ 167 (253)
T PRK02083 106 ---AV----------ANPELISE---AADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR--KPTGLDAVEWAKEVEELGA 167 (253)
T ss_pred ---Hh----------hCcHHHHH---HHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc--eecCCCHHHHHHHHHHcCC
Confidence 11 01122222 2333331 22222210 000000 0112245567788889999
Q ss_pred CEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCC-EEeeccccCCCCCCCCCCC
Q 015894 263 SEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGIS-TVDSSVSGLGGCPYAKGAS 338 (398)
Q Consensus 263 d~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~-~VD~Sv~GlGecp~a~gra 338 (398)
+.|.+-| ..|.+.-.. .++++.+++..+ .|+-.-+.-.- ..-...+++ .||+ .+-++.. -.
T Consensus 168 ~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~-ipvia~GGv~s---~~d~~~~~~~~G~~gvivg~al----------~~ 232 (253)
T PRK02083 168 GEILLTSMDRDGTKNGYD-LELTRAVSDAVN-VPVIASGGAGN---LEHFVEAFTEGGADAALAASIF----------HF 232 (253)
T ss_pred CEEEEcCCcCCCCCCCcC-HHHHHHHHhhCC-CCEEEECCCCC---HHHHHHHHHhCCccEEeEhHHH----------Hc
Confidence 9998833 444433222 456777776654 35555442211 122224454 4775 3333333 35
Q ss_pred CCccHHHHHHHHHhCCCCC
Q 015894 339 GNVATEDVVYMLNGLGVRT 357 (398)
Q Consensus 339 GNa~lE~vv~~L~~~Gi~t 357 (398)
|..+++++...|++.|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 233 GEITIGELKAYLAEQGIPV 251 (253)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 6788999999998888754
No 216
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.41 E-value=0.82 Score=45.27 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCc-CCHHHHHHHHHHHHhhCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGV-GTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~-~~P~~v~~lv~~l~~~~p 291 (398)
++++.+.|++.++-|-+ +.+ ++.+.+..+++.+.+.+... |.+... ... +....+..+++.+.++..
T Consensus 6 ~~~lL~~A~~~~yAV~A-fN~---------~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~ 75 (285)
T PRK07709 6 MKEMLNKALEGKYAVGQ-FNM---------NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMN 75 (285)
T ss_pred HHHHHHHHHHCCceEEE-EEE---------CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcC
Confidence 56778889999997742 321 46789999999999998874 555442 233 234567778888877764
Q ss_pred -CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 292 -VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 292 -~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
.+|+.+| =|.|.-+..+..|+++|.+ ++|+|-..+-+
T Consensus 76 ~~VPV~lH--LDHg~~~e~i~~ai~~GftSVM~DgS~lp~ee 115 (285)
T PRK07709 76 ITVPVAIH--LDHGSSFEKCKEAIDAGFTSVMIDASHHPFEE 115 (285)
T ss_pred CCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 3566655 5777788999999999998 66988765543
No 217
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=94.30 E-value=1.6 Score=46.40 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHH-HhcCCCEEEEec--C-CCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC------CHhhHHHHHH
Q 015894 116 VPAVVKVELIKLL-VSSGLAVVEATS--F-VSPKWVPQLADAKDVMAAIQNV--EGARFPVLTP------NLKGFEAAVA 183 (398)
Q Consensus 116 ~~~~~k~~ia~~L-~~aGv~~IEvG~--~-~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~------n~~~ie~a~~ 183 (398)
-+.+..++=++.| .+.|+..|.+.- | .+++ ...++++.+.+. .+..+.+-++ +.+-++...+
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~------~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~ 295 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRK------KFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR 295 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHH------HHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH
Confidence 3555555544444 568998876631 1 1111 123444444322 2344444343 2234677788
Q ss_pred cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 184 AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 184 ~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
+|+..|.+-+ +.|+-.+ ..+++.. ..+...++++.++++|+.+.++++ +|.|.+ +.+.+.+.++.+.+++.
T Consensus 296 aG~~~v~iGiES~~~~~L-~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~ 367 (497)
T TIGR02026 296 AGLVHISLGTEAAAQATL-DHFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDP 367 (497)
T ss_pred hCCcEEEEccccCCHHHH-HHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCC
Confidence 9998887743 3344333 2344421 244566788999999999876655 677765 57888888888999999
Q ss_pred CEEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894 263 SEISLGDTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 263 d~I~L~DT~G~~~P~~v~~lv~~l~~~ 289 (398)
+.+.+ ..++|.-=.++.+.+++.
T Consensus 368 ~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 368 DQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred CceEE----EEecCCCCcHHHHHHHhh
Confidence 88766 467776555666666553
No 218
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.30 E-value=0.65 Score=47.19 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=84.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTI-GVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.++-|-+ +.+ .+.+.+..+++.+.+.+...| .+.-.. ..+....+..++..+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~A-fN~---------~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA-FNV---------NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEEE-Eee---------CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 45678889999997742 221 467899999999999998754 443322 233346678888888887765
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccc-------cCCCCCCCCCCCCCc-cHHHHHHHHHh
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVS-------GLGGCPYAKGASGNV-ATEDVVYMLNG 352 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~-------GlGecp~a~graGNa-~lE~vv~~L~~ 352 (398)
+|+.+|. |.|.....+..|+++|.+ +||+|-. .+-+ |. -|-+++.+.+.
T Consensus 74 VPValHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~ 132 (347)
T TIGR01521 74 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDY---------NVRVTAEVVAFAHA 132 (347)
T ss_pred CcEEEEC--CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 5777654 777788999999999998 6799976 5655 54 56667777664
No 219
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.29 E-value=0.11 Score=47.11 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=83.9
Q ss_pred HHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-----C---------------H----hhHHHH
Q 015894 126 KLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-----N---------------L----KGFEAA 181 (398)
Q Consensus 126 ~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----n---------------~----~~ie~a 181 (398)
+.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++.. . . +.++.|
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 5677888888888764321110000122333333332 2555444321 1 1 135667
Q ss_pred HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894 182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G 261 (398)
...|++.+.+....-+...........+...+.+..+.++|++.|+.+...-. .+.......+.+.+.++ +.+.+
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~--~~~~~~~~~~~~~~~~~---l~~~~ 155 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH--PGPFSETPFSVEEIYRL---LEEVD 155 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S--SSSSSSEESSHHHHHHH---HHHHT
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc--cCccccchhhHHHHHHH---HhhcC
Confidence 78899999887551000001111112445666777888999999977653222 11111111222454444 44555
Q ss_pred CCEEE-EccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccc
Q 015894 262 CSEIS-LGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYG 304 (398)
Q Consensus 262 ad~I~-L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G 304 (398)
-+.+. .-|+.-... .....+.++.+... -.++|.+|..+
T Consensus 156 ~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~ 196 (213)
T PF01261_consen 156 SPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG 196 (213)
T ss_dssp TTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred CCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence 44333 335422221 24555666666554 38899999888
No 220
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=94.28 E-value=1.3 Score=42.23 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=79.5
Q ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCCC-----CeEEEEeCCccc
Q 015894 233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVPV-----DKLAVHFHDTYG 304 (398)
Q Consensus 233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~-----~~l~~H~Hnd~G 304 (398)
++.+.|.|....++.-.+.+ ++.+.+.|||+|-+.=..|.+. .+.|++-|+.+++..++ +.|+.-.=++.-
T Consensus 63 v~tVigFP~G~~~t~~K~~E-a~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 63 VCTVIGFPLGANTTAVKAAE-AREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred EEEecCCCCCCChHHHHHHH-HHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 55566778654433334444 6778899999998887777554 57788888888887764 235555566666
Q ss_pred hHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894 305 QALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG 352 (398)
Q Consensus 305 lA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~ 352 (398)
+ ...+..++++||++|=+|-+.- +|++..|++..+.+-
T Consensus 142 ~-~~A~~i~~~aGAdFVKTSTGf~---------~~gAT~edv~lM~~~ 179 (228)
T COG0274 142 K-RKACEIAIEAGADFVKTSTGFS---------AGGATVEDVKLMKET 179 (228)
T ss_pred H-HHHHHHHHHhCCCEEEcCCCCC---------CCCCCHHHHHHHHHH
Confidence 6 6778889999999999997533 558889998887764
No 221
>PRK09358 adenosine deaminase; Provisional
Probab=94.27 E-value=4.4 Score=40.51 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=77.3
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA-RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a-k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
..++.++..|+..+.++.. +.+ ....+.+.++.++.+.+.++.| ++.|+.+...++.. . ..+++...+.+
T Consensus 85 ~~~~e~~~~Gvty~E~~~~--p~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~~ 155 (340)
T PRK09358 85 EYLEDAAADGVVYAEIRFD--PQL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAAREL 155 (340)
T ss_pred HHHHHHHHcCCEEEEEEeC--hhh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHHH
Confidence 3456778899987766643 221 1234788899998888777665 45687766443321 1 12344444444
Q ss_pred HHHHh--CCCCEE--EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEE
Q 015894 255 KQLYD--MGCSEI--SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTV 321 (398)
Q Consensus 255 ~~l~~--~Gad~I--~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~V 321 (398)
+.+.+ .+-..+ .++-.-....|..+...++..++. ++++.+|+....+ ..+...|++ .|+++|
T Consensus 156 ~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri 223 (340)
T PRK09358 156 EALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI 223 (340)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence 44443 332333 333221224667777777777663 4578888876544 235566776 788764
No 222
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.27 E-value=2.2 Score=44.74 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=73.6
Q ss_pred CHHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894 152 DAKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR 223 (398)
Q Consensus 152 D~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak 223 (398)
+.+++++.+++. ++.++++-+. +.+.++...++|+.+|.+-+-.-+-.....+|+. ...+.+.++++.++
T Consensus 121 ~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr 198 (453)
T PRK13347 121 QFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLR 198 (453)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 345555555532 3445554442 3567888899999998885544433334445442 23445567788999
Q ss_pred hCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 224 ELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 224 ~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
+.|+. |.+.++ +|.|.. +.+.+.+.++.+.++|++.|.+-.
T Consensus 199 ~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 199 AAGFESINFDLI--YGLPHQ---TVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred hcCCCcEEEeEE--EeCCCC---CHHHHHHHHHHHHhcCCCEEEEec
Confidence 99986 666665 666754 688888999999999999887654
No 223
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.26 E-value=0.26 Score=48.77 Aligned_cols=121 Identities=16% Similarity=0.257 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEc-cCcCcCCHHHHHHHHHHHHhh
Q 015894 212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLG-DTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~-DT~G~~~P~~v~~lv~~l~~~ 289 (398)
|.+++++.+.|++.|+-|-+ +. + ++.+.+..+++.+.+.+... |.+. .+...+....+..++..+.++
T Consensus 2 lv~~~~ll~~A~~~~yAV~A-fN----~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~ 71 (287)
T PF01116_consen 2 LVNMKELLKKAKEGGYAVPA-FN----V-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE 71 (287)
T ss_dssp BHHHHHHHHHHHHHT-BEEE-EE----------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHCCCeEEE-Ee----e-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence 35678889999999998752 22 1 36788899999999998875 4433 345555556778888888888
Q ss_pred CCCCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894 290 VPVDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG 354 (398)
Q Consensus 290 ~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G 354 (398)
.. +|+.+|. |.|..+.....|+++|.+ ++|+|-..+-+ |. -|-+++.+.+..|
T Consensus 72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~ah~~g 127 (287)
T PF01116_consen 72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE---------NIAITREVVEYAHAYG 127 (287)
T ss_dssp ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH---------HHHHHHHHHHHHHHTT
T ss_pred cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH---------HHHHHHHHHHhhhhhC
Confidence 75 5676654 566669999999999998 67999888888 66 5677777777443
No 224
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=94.25 E-value=0.27 Score=46.92 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhCCCCE--EEEccCcCcCCHHHH--HHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHHHHHhCCC
Q 015894 245 VPPSKVAYVSKQLYDMGCSE--ISLGDTIGVGTPGTV--IPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILASLQMGIS 319 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~v--~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANalaAl~aGa~ 319 (398)
.++..+.+.++++.+.|++. +-+.| |...|.-. .+.++.+++..|..++.+|.| +|....+ -.+.++|++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad 90 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGAS 90 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCC
Confidence 46788888999999999987 55566 88888522 367888988878889999999 5544433 556688999
Q ss_pred EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894 320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR 356 (398)
Q Consensus 320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~ 356 (398)
+|. +.+-+ +.-.++..+..+++.|..
T Consensus 91 ~it--vH~ea---------~~~~~~~~l~~ik~~G~~ 116 (228)
T PTZ00170 91 QFT--FHIEA---------TEDDPKAVARKIREAGMK 116 (228)
T ss_pred EEE--EeccC---------CchHHHHHHHHHHHCCCe
Confidence 874 33222 122155666666655543
No 225
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=94.23 E-value=4 Score=42.78 Aligned_cols=150 Identities=11% Similarity=0.120 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhh
Q 015894 132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSN 203 (398)
Q Consensus 132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~ 203 (398)
++..|-+|-.. |...+ ..+..++++.++.. .+..+.+-+ + +.+.++...++|+..|.|-+-.-+-.....
T Consensus 102 ~v~~I~fgGGt-P~~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~ 179 (455)
T TIGR00538 102 HVSQLHWGGGT-PTYLS-PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQA 179 (455)
T ss_pred ceEEEEECCCC-cCCCC-HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 56666665322 21111 12334555555532 234454444 2 346688889999999888543333222234
Q ss_pred cCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC------------
Q 015894 204 INCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT------------ 270 (398)
Q Consensus 204 ~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT------------ 270 (398)
+|+. ...+.+.++++.+++.|+. +.+.++ +|.|.. +.+.+.+.++.+.++|++.|.+-.-
T Consensus 180 l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~ 252 (455)
T TIGR00538 180 VNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK 252 (455)
T ss_pred hCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc
Confidence 4442 2245566788999999996 555555 666653 6788888899999999998765432
Q ss_pred ---cCcCCHHHHHHHHHHHHhhC
Q 015894 271 ---IGVGTPGTVIPMLEAVLDAV 290 (398)
Q Consensus 271 ---~G~~~P~~v~~lv~~l~~~~ 290 (398)
.....+++..+++..+.+.+
T Consensus 253 ~~~~~~~~~e~~~~~~~~~~~~L 275 (455)
T TIGR00538 253 IPEAALPSAEEKLDILQETIAFL 275 (455)
T ss_pred ccccCCCCHHHHHHHHHHHHHHH
Confidence 11234666666766666543
No 226
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.20 E-value=0.96 Score=44.59 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----ccCc-Cc---CCHH
Q 015894 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISL-----GDTI-GV---GTPG 277 (398)
Q Consensus 208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L-----~DT~-G~---~~P~ 277 (398)
.+..++.+.+ ..++.+..+.+.|.. .+++.+.+.++.+.++| +|.|.| .-.. |. ..|+
T Consensus 76 ~~~~~~~~~~---~~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~ 143 (301)
T PRK07259 76 VDAFIEEELP---WLEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPE 143 (301)
T ss_pred HHHHHHHHHH---HHhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHH
Confidence 3444554433 223446666555541 36889999999999999 998877 1111 22 3589
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 278 TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 278 ~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.+.++++++++.. +.||.+..=.+.--...-+..+.++|++.|+.
T Consensus 144 ~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 144 LAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999999887 45788876544443444455677899998865
No 227
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.17 E-value=1.4 Score=44.38 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=84.3
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~ 245 (398)
+++.++|.|.|.|... +|+. ++...+|-|.++-.+...++++.+|+. | +.+.+-++..-..+ .-.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~--~g~ 233 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR--GGF 233 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC--CCC
Confidence 4667899999988655 4555 334566778888888888889888875 4 34544444211011 125
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCC---------------HHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHH
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT---------------PGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSN 309 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---------------P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~AN 309 (398)
+++...++++.+.++|+|.|.+.. |... +....++.+.+++.+.. ||.. -..+ ....
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~----t~~~ 306 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT-PLMVTGGFR----TRAA 306 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCC-CEEEeCCCC----CHHH
Confidence 788899999999999999988632 2110 11124566777777642 3333 2222 3456
Q ss_pred HHHHHHhC-CCEEe
Q 015894 310 ILASLQMG-ISTVD 322 (398)
Q Consensus 310 alaAl~aG-a~~VD 322 (398)
+..+++.| +|.|-
T Consensus 307 a~~~l~~g~aD~V~ 320 (338)
T cd04733 307 MEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHcCCCCeee
Confidence 67777777 56553
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=94.16 E-value=0.036 Score=52.03 Aligned_cols=167 Identities=19% Similarity=0.185 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccCch
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASASE 197 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd 197 (398)
-.+-++.|.++|++.+=+-... ..++|.+.-..+.++.+++.++..+-+ ++.+. +=++...++|++.|.+..-
T Consensus 14 l~~~i~~l~~~g~d~lHiDiMD-g~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E--- 89 (201)
T PF00834_consen 14 LEEEIKRLEEAGADWLHIDIMD-GHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAE--- 89 (201)
T ss_dssp HHHHHHHHHHTT-SEEEEEEEB-SSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG---
T ss_pred HHHHHHHHHHcCCCEEEEeecc-cccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc---
Confidence 3567888999999965552211 112344443456677788766655544 45565 4478889999998877542
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCcCc
Q 015894 198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTIGV 273 (398)
Q Consensus 198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~G~ 273 (398)
+.+...++++++|++|+.+...+. |. ++.+.+.++.. -+|.|-+ +...|.
T Consensus 90 -------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~~~~l~-----~vD~VlvMsV~PG~~Gq 143 (201)
T PF00834_consen 90 -------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEELEPYLD-----QVDMVLVMSVEPGFGGQ 143 (201)
T ss_dssp -------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGGTTTGC-----CSSEEEEESS-TTTSSB
T ss_pred -------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHHHHHhh-----hcCEEEEEEecCCCCcc
Confidence 223445678899999999876554 32 34444444332 3565433 333444
Q ss_pred CCHHHHHHHHHHHHhhCCC----CeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 274 GTPGTVIPMLEAVLDAVPV----DKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 274 ~~P~~v~~lv~~l~~~~p~----~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
..=..+.+.|+.+++..+. ..|++ |=|.-..|+-...++||+.+
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~ 191 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF 191 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 4445566666666665432 34554 66777788888999999965
No 229
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=94.15 E-value=3.3 Score=40.04 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=72.4
Q ss_pred CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
..++++...+.|++.+-|.-. |+ .+ ...++++.+.|+++. ++ .|..+.+++.+.
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~--dl--------------~n-~~lL~~~A~tgkPvI--lS-------TG~stl~EI~~A 131 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASG--DL--------------TN-LPLLEYIAKTGKPVI--LS-------TGMSTLEEIERA 131 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GG--GT--------------T--HHHHHHHHTT-S-EE--EE--------TT--HHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEeccc--cc--------------cC-HHHHHHHHHhCCcEE--EE-------CCCCCHHHHHHH
Confidence 344666777778888887422 11 11 245566677888875 33 345678888888
Q ss_pred HHHHHhCCCCEEE-EccCcCcCCHHHHH--HHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eecccc
Q 015894 254 SKQLYDMGCSEIS-LGDTIGVGTPGTVI--PMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSG 327 (398)
Q Consensus 254 a~~l~~~Gad~I~-L~DT~G~~~P~~v~--~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~G 327 (398)
++.+.+.|...|. +==+.++=+|.+=. ..+..+++.+| .++|+=-|.. | +...++|+..||.+| +.|+.-
T Consensus 132 v~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTldr 206 (241)
T PF03102_consen 132 VEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLDR 206 (241)
T ss_dssp HHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-T
T ss_pred HHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECCC
Confidence 8888666655443 33344555554333 35888999999 6899999988 4 455789999999998 667653
No 230
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=94.14 E-value=4.8 Score=39.49 Aligned_cols=136 Identities=16% Similarity=0.129 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC---H-hhHHHHHHcCCCEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN---L-KGFEAAVAAGAKEVA 190 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n---~-~~ie~a~~~Gv~~v~ 190 (398)
.++.++..++++.+.+.|+..|-++. ..|-.. .|..++++.+++. +..-..+..| . +-++...++|++.|.
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEPll~---~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~ 113 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG-GEPLLR---KDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRVN 113 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC-cccccc---cCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEEE
Confidence 57889999999999999999888753 222111 2445556655543 3322233433 2 334566789999999
Q ss_pred EeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 191 IFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 191 i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|.+.. ++...+ .+. ....++.+.+.++.+++.|+. +.++.. + .+. .+.+++.++++.+.+.|++.
T Consensus 114 iSld~~~~~~~~-~i~--~~~~~~~vl~~i~~~~~~G~~~v~i~~v--~-~~g---~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 114 VSLDTLDPEKYK-KIT--GRGALDRVIEGIESAVDAGLTPVKLNMV--V-LKG---INDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred EEecCCCHHHhh-hcc--CCCcHHHHHHHHHHHHHcCCCcEEEEEE--E-eCC---CCHHHHHHHHHHHHhcCCEE
Confidence 86554 332212 222 123566777788888999986 654433 2 121 35677888999899999863
No 231
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.07 E-value=2.7 Score=41.65 Aligned_cols=138 Identities=18% Similarity=0.099 Sum_probs=83.8
Q ss_pred HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~ 245 (398)
+++.++|.|.|.|...- |+. +....+|-+.++-.+.+.++++.+|+. ++.+.+-++.... ..+..
T Consensus 148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~--~~~g~ 225 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF--VPGGL 225 (327)
T ss_pred HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc--CCCCC
Confidence 56678999998886541 221 233445667777777778888888874 3344443442110 11235
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCC----------HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT----------PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~----------P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~ 315 (398)
+++...++++.+.++|+|.|.+......-. +..-.+.++.+++.++ +||..-.--+ ....+..+++
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~---t~~~a~~~l~ 301 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAVGGIR---DPEVAEEILA 301 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEeCCCC---CHHHHHHHHH
Confidence 788999999999999999998765432211 1233466777777764 3454433221 2455667777
Q ss_pred h-CCCEEe
Q 015894 316 M-GISTVD 322 (398)
Q Consensus 316 a-Ga~~VD 322 (398)
. ||+.|-
T Consensus 302 ~g~aD~V~ 309 (327)
T cd02803 302 EGKADLVA 309 (327)
T ss_pred CCCCCeee
Confidence 7 577654
No 232
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=94.04 E-value=3.2 Score=36.38 Aligned_cols=136 Identities=14% Similarity=0.109 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeC----CHhhHHHHHHcCCCEEEEec
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTP----NLKGFEAAVAAGAKEVAIFA 193 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~ 193 (398)
++..+++......|+..+-++..- |-..| ...++++.+++. ++..+...+. +.+.++...++|+..+.+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~gge-p~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~l 106 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGE-PLLYP---ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSL 106 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCc-CCccH---hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEc
Confidence 566777777788888887775421 11011 233444455433 4666665553 35678888999999999877
Q ss_pred cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCE
Q 015894 194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSE 264 (398)
Q Consensus 194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~ 264 (398)
...+......++ .....+++..+.++.+++.|+.+.+.+. .|.+.. +.+.+.+.++.+.+.+ ++.
T Consensus 107 e~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~---~~~~~~~~~~~l~~~~~~~~ 172 (204)
T cd01335 107 DSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDE---DEEDDLEELELLAEFRSPDR 172 (204)
T ss_pred ccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCC---hhHHHHHHHHHHHhhcCcch
Confidence 655544333332 1112345556677788888998876666 443432 2466666666676665 443
No 233
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.04 E-value=2.5 Score=42.41 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE---c-----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISL---G-----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
.+++.+.++++.+.++|+|.|.| | +..|...+..+.++++.+++... +||.+..=-+......-+.++.++
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~ 189 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAA 189 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHc
Confidence 35678889999999999998877 2 33454445668899999998764 567777544443333444555679
Q ss_pred CCCEEeec
Q 015894 317 GISTVDSS 324 (398)
Q Consensus 317 Ga~~VD~S 324 (398)
|++.|..+
T Consensus 190 G~dgI~~~ 197 (334)
T PRK07565 190 GADGLVLF 197 (334)
T ss_pred CCCeEEEE
Confidence 99988664
No 234
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.99 E-value=1.3 Score=41.72 Aligned_cols=154 Identities=19% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHHhc-c-CCcEEE--Ee-CCH--
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQNV-E-GARFPV--LT-PNL-- 175 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~~~-~-~~~l~~--l~-~n~-- 175 (398)
.+.++.++|.+.|+.-|.+.||.|.|.+... .|.. ...+.+++.+++. + ++.+.. +. .|.
T Consensus 29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl 108 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPIL 108 (268)
T ss_pred CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHH
Confidence 4567889999999999999999998765321 1211 1233445555532 2 333322 22 231
Q ss_pred -----hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 176 -----KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 176 -----~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
+-++.+.++|+..+-|.+- -+||+ ..+-.+||++|+....-+ ..+++++-
T Consensus 109 ~yG~e~~iq~ak~aGanGfiivDl------------PpEEa----~~~Rne~~k~gislvpLv---------aPsTtdeR 163 (268)
T KOG4175|consen 109 RYGVENYIQVAKNAGANGFIIVDL------------PPEEA----ETLRNEARKHGISLVPLV---------APSTTDER 163 (268)
T ss_pred hhhHHHHHHHHHhcCCCceEeccC------------ChHHH----HHHHHHHHhcCceEEEee---------CCCChHHH
Confidence 2356778899987766432 23333 345678999999875322 22334433
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCH-----HHHHHHHHHHHhhCCCCeEEE
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTP-----GTVIPMLEAVLDAVPVDKLAV 297 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P-----~~v~~lv~~l~~~~p~~~l~~ 297 (398)
.++.-.+. -.-||+.-.+|.--- ..+..++.++|+...+.|+.+
T Consensus 164 mell~~~a---dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV 212 (268)
T KOG4175|consen 164 MELLVEAA---DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV 212 (268)
T ss_pred HHHHHHhh---cceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence 33322222 235777777776433 456778888888776666665
No 235
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.99 E-value=2 Score=43.39 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=83.8
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCH
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPP 247 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~ 247 (398)
++|.++|.|.|.|... +|+. ++...+|-|.+.-.+.+.++++..|+. ++.|.+-++..-..+ +-.++
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~--~G~~~ 226 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP--GGLTV 226 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCCH
Confidence 4667899999988654 2443 244455667777777778888877775 455544444211111 12468
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcC-------CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CC
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVG-------TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-IS 319 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~ 319 (398)
++..++++.+.+.|+|.|.+. .|.. .|....++.+.+++.+...-+..-.-++ ...+.++++.| +|
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g~~D 300 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNNRAD 300 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcCCCC
Confidence 999999999999999999883 3431 1222345677777766432234443344 35566778877 66
Q ss_pred EE
Q 015894 320 TV 321 (398)
Q Consensus 320 ~V 321 (398)
.|
T Consensus 301 ~V 302 (337)
T PRK13523 301 LI 302 (337)
T ss_pred hH
Confidence 54
No 236
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.95 E-value=2 Score=43.55 Aligned_cols=137 Identities=16% Similarity=0.069 Sum_probs=79.4
Q ss_pred HHHHHcCCCEEEEecc--------CchHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C----C--cEEEEEeeeecCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASESF--SKSNINCTIEDSLIRYRDVALAAREL-S----I--PVRGYLSCVVGCPV 241 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~-G----~--~v~~~l~~~fg~~~ 241 (398)
++|.++|.|.|.|... +|+.. +...+|-+.++-.+.+.++++.+|+. | . .|..-++..- ..
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~--~~ 228 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE--PE 228 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc--cc
Confidence 4667899999988642 34433 33455667787777788888887764 4 2 3333333210 01
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEccCc----CcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTI----GVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
.+-.++++..++++.+.++|+|.|.+.-.. ....|..-...++.+++.+ +.+||-.-+--+ -...+..+++.
T Consensus 229 ~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~---t~e~ae~~l~~ 305 (353)
T cd04735 229 EPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN---TPDDALEALET 305 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC---CHHHHHHHHHc
Confidence 223567888999999999999999884311 0011111234455566655 244555543321 13445566666
Q ss_pred CCCE
Q 015894 317 GIST 320 (398)
Q Consensus 317 Ga~~ 320 (398)
|++.
T Consensus 306 gaD~ 309 (353)
T cd04735 306 GADL 309 (353)
T ss_pred CCCh
Confidence 7664
No 237
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.94 E-value=2.9 Score=40.30 Aligned_cols=189 Identities=16% Similarity=0.227 Sum_probs=108.3
Q ss_pred HHHHHHhcCCCEEEEecCCC--CCcccC--CCCHHHHHHHHHhc-cCCcEEEEe--C----CH----hhHHHHHHcCCCE
Q 015894 124 LIKLLVSSGLAVVEATSFVS--PKWVPQ--LADAKDVMAAIQNV-EGARFPVLT--P----NL----KGFEAAVAAGAKE 188 (398)
Q Consensus 124 ia~~L~~aGv~~IEvG~~~~--~~~~p~--~~D~~~v~~~i~~~-~~~~l~~l~--~----n~----~~ie~a~~~Gv~~ 188 (398)
-++.+.++|++.|=+|.... ....|. +-+.+++...++.+ +.+.+...+ + +. +.+++..+.|+..
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 46778888999999985421 112232 23556777777654 223333332 2 22 2356677899999
Q ss_pred EEEeccCchHHH---hhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894 189 VAIFASASESFS---KSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 189 v~i~~~~Sd~~~---~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~ 264 (398)
|.+-....+-.. ..+.-.+.++..++++.+++.+++. .+.+.+- +.++ ..+....++..+-++...++|||.
T Consensus 101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiAR-TDa~---~~~~~~~~eai~Ra~ay~~AGAD~ 176 (243)
T cd00377 101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIAR-TDAL---LAGEEGLDEAIERAKAYAEAGADG 176 (243)
T ss_pred EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEE-cCch---hccCCCHHHHHHHHHHHHHcCCCE
Confidence 999766543210 0112347899999988777776663 2222110 0011 011145788888899999999999
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
+.+. |..+++++..+.+. .+ .|+-+....... .-+.-.--+.|+++|-....
T Consensus 177 v~v~---~~~~~~~~~~~~~~----~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~~ 228 (243)
T cd00377 177 IFVE---GLKDPEEIRAFAEA----PD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGLA 228 (243)
T ss_pred EEeC---CCCCHHHHHHHHhc----CC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEEChH
Confidence 9885 33366665555444 33 467666544432 12233334568887765444
No 238
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.90 E-value=0.52 Score=47.54 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccC-cCcCCHHHHHHHHHHHHhhCCCCeEEEE---------eCCccchHHHHHHHH
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDT-IGVGTPGTVIPMLEAVLDAVPVDKLAVH---------FHDTYGQALSNILAS 313 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~l~~H---------~Hnd~GlA~ANalaA 313 (398)
+.+++.+.+.++.+.+.|+++|.|.+- .-...+..+.++++.+++.+|+ +.+| .|.+.|+-....+..
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999932 2234667789999999998886 4444 466788877777777
Q ss_pred H-HhCCCEEe
Q 015894 314 L-QMGISTVD 322 (398)
Q Consensus 314 l-~aGa~~VD 322 (398)
+ +||++.+.
T Consensus 147 LkeAGl~~i~ 156 (343)
T TIGR03551 147 LKEAGLDSMP 156 (343)
T ss_pred HHHhCccccc
Confidence 6 48999886
No 239
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=93.89 E-value=3.6 Score=42.47 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC---C-CCCcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHHc
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF---V-SPKWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVAA 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~-~~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~~ 184 (398)
..+.++.++-++.|.+.|+..|-+... . ..++ +......++++.+.+.++. ++..+-+. .+-++...++
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~-~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 244 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDL-KNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE 244 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCC-CCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence 468888888888999999998876421 1 1111 0012345666666655543 22222222 2335666666
Q ss_pred C--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894 185 G--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 185 G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~ 259 (398)
| ...+.+-+ +.|+--++ .+++.. ..+.+.++++.+++ .|+.+.++++ +|.|.+ +++.+.+.++.+.+
T Consensus 245 ~~~~~~l~lglESgs~~vLk-~m~R~~--~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 316 (414)
T TIGR01579 245 KRLCPHLHLSLQSGSDRVLK-RMRRKY--TRDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKE 316 (414)
T ss_pred CccCCCeEECCCcCChHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 6 56677643 44444333 355432 33556777888888 7888887776 677765 57788888888888
Q ss_pred CCCCEEE
Q 015894 260 MGCSEIS 266 (398)
Q Consensus 260 ~Gad~I~ 266 (398)
.+.+.+.
T Consensus 317 ~~~~~~~ 323 (414)
T TIGR01579 317 IEFSHLH 323 (414)
T ss_pred CCCCEEE
Confidence 8887654
No 240
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.85 E-value=5.8 Score=37.21 Aligned_cols=182 Identities=15% Similarity=0.072 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccC
Q 015894 118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
..+-+++++.+.+.|++.+-+--...- ........++...+++.-+..+.+- .++.++++.+++.|++.|.+-...
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 346688999999999998888522110 0001112344444543334444443 367889999999999988653221
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC--CCCC-CCCHHHHHHHHHHHHhCCCCEEEEccC-
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGC--PVEG-MVPPSKVAYVSKQLYDMGCSEISLGDT- 270 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~--~~~~-r~~~~~l~~~a~~l~~~Gad~I~L~DT- 270 (398)
. +..+.+ .+.+++.|. .+.+.+-.--+. .... ..+.....++++.+.+.|++.|.+-|.
T Consensus 106 ---l----------~dp~~~---~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~ 169 (234)
T cd04732 106 ---V----------KNPELV---KELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS 169 (234)
T ss_pred ---H----------hChHHH---HHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 1 111222 233344554 333222210000 0000 112334557788889999999877764
Q ss_pred -cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 271 -IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 271 -~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.|.... .-.++++.+++..+ +|+-.-+.-.. ..-...++..||+.|=
T Consensus 170 ~~g~~~g-~~~~~i~~i~~~~~-ipvi~~GGi~~---~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 170 RDGTLSG-PNFELYKELAAATG-IPVIASGGVSS---LDDIKALKELGVAGVI 217 (234)
T ss_pred CCCccCC-CCHHHHHHHHHhcC-CCEEEecCCCC---HHHHHHHHHCCCCEEE
Confidence 555444 22567777777654 35555442221 1224455556887553
No 241
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.80 E-value=0.72 Score=46.87 Aligned_cols=102 Identities=12% Similarity=0.121 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCC
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p 291 (398)
.++++.+.|++.|+-|-+ +.+ ++.+.+..+++.+.+.+... |.+... ...+....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~A-fN~---------~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA-FNV---------NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 356778899999997742 321 46789999999999999875 444432 233445668888888888776
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeecccc
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSG 327 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~G 327 (398)
.+|+.+| =|.|.-...+..|+++|.+ +||+|-..
T Consensus 75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l~ 110 (347)
T PRK13399 75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLLA 110 (347)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence 5577765 4777778889999999998 67999875
No 242
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.76 E-value=3.1 Score=41.13 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=91.1
Q ss_pred hhHHHHHHcCCCEEEEe-ccCchHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIF-ASASESFSKSNIN-CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~~~-~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
-....+.+.|.+-+.+. .+++...--.-++ .|.++.++.++++++. -.++|.+.+-.-|| ++..+...
T Consensus 29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvart 98 (289)
T COG2513 29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGFG-------EALNVART 98 (289)
T ss_pred HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHH
Confidence 34456677887766652 1111111000112 2577788777666553 47777665553332 47888899
Q ss_pred HHHHHhCCCCEEEEccCcCc-----------CCHHHHHHHHHHHHhhCCCCeEE------EEeCCccchHHHHHHHHHHh
Q 015894 254 SKQLYDMGCSEISLGDTIGV-----------GTPGTVIPMLEAVLDAVPVDKLA------VHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 254 a~~l~~~Gad~I~L~DT~G~-----------~~P~~v~~lv~~l~~~~p~~~l~------~H~Hnd~GlA~ANalaAl~a 316 (398)
++++.++|+-.|.|-|.++- ..+.++.+.|++.++.-++..+- ...+.-+.-|+.-+.+-++|
T Consensus 99 V~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eA 178 (289)
T COG2513 99 VRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEA 178 (289)
T ss_pred HHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHc
Confidence 99999999999999999984 55688888888888776543332 24444477889999999999
Q ss_pred CCCEE
Q 015894 317 GISTV 321 (398)
Q Consensus 317 Ga~~V 321 (398)
|||.|
T Consensus 179 GAD~i 183 (289)
T COG2513 179 GADAI 183 (289)
T ss_pred CCcEE
Confidence 99976
No 243
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.75 E-value=0.89 Score=47.18 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894 250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG 329 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG 329 (398)
..+.++.+.++|+|.|.| |+.. ..+..+.++++.+++.+|+.+|-+..=-+ ...+..++++||+.|-+ |+|
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v---G~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV---GIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE---CCC
Confidence 456688889999999998 6665 45789999999999999986665543333 35667888999999984 655
Q ss_pred C
Q 015894 330 G 330 (398)
Q Consensus 330 e 330 (398)
.
T Consensus 225 ~ 225 (404)
T PRK06843 225 P 225 (404)
T ss_pred C
Confidence 4
No 244
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=93.75 E-value=0.97 Score=44.68 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=82.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.|+-|-+ +.+ .+.+.+..+++.+.+.+... |.+... ...+....+..++..+.+...
T Consensus 4 ~k~ll~~A~~~~yAV~A-fN~---------~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 72 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPA-FNI---------HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN- 72 (282)
T ss_pred HHHHHHHHHHcCCeEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 45778889999998742 221 46788999999999999874 444432 233445667788888887775
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG 354 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G 354 (398)
+|+.+|. |.|.-...+..|+++|.+ ++|+|-..+-+ |. -|-+++.+.+..|
T Consensus 73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~~g 126 (282)
T TIGR01858 73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQ---------NVKLVKEVVDFCHRQD 126 (282)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence 4677654 667778889999999998 66999876655 54 4555666555333
No 245
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=93.72 E-value=5.6 Score=40.50 Aligned_cols=239 Identities=21% Similarity=0.202 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccC
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
+.+..++-+..|.++|.+.+-+..+. +.+++.+ ..+++..++.+.+=. .+.+-.-.|++.|++.+||=-.
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~-------~~~a~al-~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPG- 110 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPD-------MEAAAAL-PEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPG- 110 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCC-------HHHHHhH-HHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCC-
Confidence 44555778889999999999998643 2344333 333322233333311 2333334557789999998322
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCE-
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVA----YVSKQLYDMGCSE- 264 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~----~~a~~l~~~Gad~- 264 (398)
|++. .-++++++++.||++|+.++..+. .|+-.. +..+++-+. +.++.+.++|.+.
T Consensus 111 -------Nig~----~~~~v~~vv~~ak~~~ipIRIGvN--~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~i 177 (360)
T PRK00366 111 -------NIGK----RDERVREVVEAAKDYGIPIRIGVN--AGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDI 177 (360)
T ss_pred -------CCCc----hHHHHHHHHHHHHHCCCCEEEecC--CccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 3321 135667889999999999996665 343211 112344333 3566777888874
Q ss_pred -EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHH---HHHHHH-HHhCC-CEEeeccccCCCCCCCCC
Q 015894 265 -ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQAL---SNILAS-LQMGI-STVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 265 -I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~---ANalaA-l~aGa-~~VD~Sv~GlGecp~a~g 336 (398)
|+++.| .+..+-+-.+.+.+..+ -|||+=. --+.-.++ +-.+.+ +.-|+ |.|-+|+.+
T Consensus 178 viS~KsS----~v~~~i~ayrlla~~~d-yPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~--------- 243 (360)
T PRK00366 178 KISVKAS----DVQDLIAAYRLLAKRCD-YPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTA--------- 243 (360)
T ss_pred EEEEEcC----CHHHHHHHHHHHHhcCC-CCceecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCC---------
Confidence 556654 34443333344434332 2232211 11111111 122222 23564 567777652
Q ss_pred CCCCccHHHHHHHH---HhCCCC--------------CccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCC
Q 015894 337 ASGNVATEDVVYML---NGLGVR--------------TNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASK 397 (398)
Q Consensus 337 raGNa~lE~vv~~L---~~~Gi~--------------t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~ 397 (398)
. |.||+-... +.+|+. +.+|+..+ +.+.-++..+.+.|-+.++-|.-+..|=|++
T Consensus 244 ---~-P~~EV~va~~IL~slglr~~g~~IisCPgCgR~~~D~~~l--a~~vee~~~~~~~PlkIAVmGC~VNgpGEa~ 315 (360)
T PRK00366 244 ---D-PVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQE--LAEVEQRLEHIKMPLKVAVMGCVVNGPGEAK 315 (360)
T ss_pred ---C-CHHHHHHHHHHHHHcCCccCCCeEEECCCCCCCcccHHHH--HHHHHHHhcCCCCCcEEEEeCCCCCCCCchh
Confidence 2 467776543 334442 22343332 2333445668889988899998776666654
No 246
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.72 E-value=2.1 Score=41.78 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc----cCcC----cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc--hHHHHHHHHHH
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLG----DTIG----VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--QALSNILASLQ 315 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~----DT~G----~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--lA~ANalaAl~ 315 (398)
+++.+.+.++.+.++|+|.|.|- .+.+ .-.|..+.++++++++.+ +.||.+-.=-... -...-+.++.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999987652 2111 236889999999999876 3456665443333 34455556778
Q ss_pred hCCCEEeec
Q 015894 316 MGISTVDSS 324 (398)
Q Consensus 316 aGa~~VD~S 324 (398)
+||+.|.++
T Consensus 188 ~Gad~i~~~ 196 (289)
T cd02810 188 AGADGLTAI 196 (289)
T ss_pred cCCCEEEEE
Confidence 999988765
No 247
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=93.69 E-value=4.4 Score=42.45 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=70.4
Q ss_pred HHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894 153 AKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAR 223 (398)
Q Consensus 153 ~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak 223 (398)
.+++++.+++. ++..+++-++ +.+-++...++|+.+|.+-+ +.++-. -..+|+. ...+.+.++++.++
T Consensus 121 l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~-L~~l~r~--~~~~~~~~ai~~l~ 197 (453)
T PRK09249 121 LRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEV-QKAVNRI--QPFEFTFALVEAAR 197 (453)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHH-HHHhCCC--CCHHHHHHHHHHHH
Confidence 34555555432 2345554442 34668888899999988854 334332 2334432 23445567788899
Q ss_pred hCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 224 ELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 224 ~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
+.|+ .+.+.++ +|.|.. +.+.+.+.++.+.+.|++.|.+-.
T Consensus 198 ~~G~~~v~~dli--~GlPgq---t~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 198 ELGFTSINIDLI--YGLPKQ---TPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred HcCCCcEEEEEE--ccCCCC---CHHHHHHHHHHHHhcCCCEEEEcc
Confidence 9998 5666665 666654 678888889999999999887764
No 248
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.67 E-value=9 Score=38.85 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh---ccCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN---VEGARFPVLTPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~n~~~ie~a~~~Gv~~v~ 190 (398)
+.++.+++|+.|.++|...+-.+.|- +|...-.+ .++=+..+++ -.+..+..=..+..+++.+.+. +|.+.
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq 181 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ 181 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE
Confidence 78888999999999999977766542 22111111 1233334432 2344433333577788888877 88888
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
|-... +.. .+.++++-+.|.+|- +.. .--.+++++...++.+...|-+.+.|+.-
T Consensus 182 IgAr~----------~~N-------~~LL~~va~~~kPVi--Lk~------G~~~ti~E~l~A~e~i~~~GN~~viL~er 236 (335)
T PRK08673 182 IGARN----------MQN-------FDLLKEVGKTNKPVL--LKR------GMSATIEEWLMAAEYILAEGNPNVILCER 236 (335)
T ss_pred ECccc----------ccC-------HHHHHHHHcCCCcEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 74331 111 134455567788875 331 11237899999999999999988888873
Q ss_pred --cCc--CCHHHHH-HHHHHHHhhCCCCeE-EEEeCC--ccchHHHHHHHHHHhCCC--EEeeccc
Q 015894 271 --IGV--GTPGTVI-PMLEAVLDAVPVDKL-AVHFHD--TYGQALSNILASLQMGIS--TVDSSVS 326 (398)
Q Consensus 271 --~G~--~~P~~v~-~lv~~l~~~~p~~~l-~~H~Hn--d~GlA~ANalaAl~aGa~--~VD~Sv~ 326 (398)
... .++..+. ..+..+++.+. .|+ ..=.|- ..-+...-+++|+.+||+ +|+.-..
T Consensus 237 G~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 237 GIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred CCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 122 2222222 23445555443 455 443333 334556789999999999 7765443
No 249
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.66 E-value=1.2 Score=44.16 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred EEeCCHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894 170 VLTPNLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS 248 (398)
Q Consensus 170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~ 248 (398)
+=+-|.+..+.|-++|.+.|.+.... ||. .+.+ |..+-...+.+.. ++. .-.++|.+ ..-..
T Consensus 22 mdv~~~~~a~iae~~g~~~v~~~~~~psd~-~~~g-g~~Rm~~p~~I~a-Ik~--~V~iPVig------------k~Rig 84 (293)
T PRK04180 22 MDVVNAEQAKIAEEAGAVAVMALERVPADI-RAAG-GVARMADPKMIEE-IMD--AVSIPVMA------------KARIG 84 (293)
T ss_pred EEeCCHHHHHHHHHhChHHHHHccCCCchH-hhcC-CeeecCCHHHHHH-HHH--hCCCCeEE------------eehhh
Confidence 33457777788888888877654332 333 2222 3333223333321 221 12566642 11234
Q ss_pred HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
++.+ ++.+.++|+|.| |-....+| ..+++..+++.| ..++-.-+-| +..++.++..|+++|-++
T Consensus 85 h~~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 85 HFVE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence 4444 778999999999 88889999 568999999888 4445444433 567789999999999888
No 250
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.62 E-value=6.3 Score=38.31 Aligned_cols=202 Identities=12% Similarity=0.048 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhc--cCCcEEEEe--------CCH-----------hh
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNV--EGARFPVLT--------PNL-----------KG 177 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~--~~~~l~~l~--------~n~-----------~~ 177 (398)
.+.++.+.+.|++.+|+..-....|...+-+ .+.+.+.+.+. ....+.+.+ ++. +.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 4578889999999999943222223322212 22222322221 111122221 121 12
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.|...|++.|.+..+.- ...+.+++++++.+.++.+-+....|...+....+.+..--.+++.+.++++.+
T Consensus 94 i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~~ 166 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKVI 166 (274)
T ss_pred HHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHhc
Confidence 4566778888666643311 122556777777766655443222244334322221111124677777766544
Q ss_pred HhCCCCEEEEccCcCcC--------CHHHHHHHHHHHHhhCC-CCeEEEEeCCccc-hHHHHHHHHHHhCCCEEeecccc
Q 015894 258 YDMGCSEISLGDTIGVG--------TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYG-QALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 258 ~~~Gad~I~L~DT~G~~--------~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~G-lA~ANalaAl~aGa~~VD~Sv~G 327 (398)
.. .+.+.+|--+|-+ ++..+.+++..+.+.+. +.-..+|+||+.. .+ .|.+ -+ ..
T Consensus 167 ~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H---~~ 231 (274)
T TIGR00587 167 VD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH---EN 231 (274)
T ss_pred CC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC---CC
Confidence 21 1344443322222 26667777777776653 3346789888742 11 0111 11 12
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhC
Q 015894 328 LGGCPYAKGASGNVATEDVVYMLNGL 353 (398)
Q Consensus 328 lGecp~a~graGNa~lE~vv~~L~~~ 353 (398)
+ +.|+.+.+.++..|++.
T Consensus 232 i--------G~G~i~~~~~~~~L~~~ 249 (274)
T TIGR00587 232 I--------GEGIIGFDAFRLIMDDE 249 (274)
T ss_pred c--------CCccCCHHHHHHHHcCc
Confidence 2 35788999999999764
No 251
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.61 E-value=2.5 Score=41.00 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHh-----ccCCcEEEEeCCHhh-H---HHHHHc-CCCEEEE
Q 015894 123 ELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQN-----VEGARFPVLTPNLKG-F---EAAVAA-GAKEVAI 191 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~-----~~~~~l~~l~~n~~~-i---e~a~~~-Gv~~v~i 191 (398)
.+.+.+..+|.+.+-+..-- ... + ...+.+++.++. +||+ +-|++.++ + +.+.+. |.+.|.+
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~~~~~~lpNT---aG~~ta~eAv~~a~lare~~~~~~iKl 96 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDKSGYTLLPNT---AGCRTAEEAVRTARLAREALGTDWIKL 96 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhccccCCEECCCC---CCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 46778899999998887421 110 0 112234444431 2332 33444332 3 344554 6788888
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
-+--.+.+ .+....+.++.|+++ |+.|.+|.. -|+ ..++++.++|++.| .+
T Consensus 97 EVi~d~~~-----------Llpd~~~tv~aa~~L~~~Gf~vlpyc~----------dd~----~~ar~l~~~G~~~v-mP 150 (248)
T cd04728 97 EVIGDDKT-----------LLPDPIETLKAAEILVKEGFTVLPYCT----------DDP----VLAKRLEDAGCAAV-MP 150 (248)
T ss_pred EEecCccc-----------cccCHHHHHHHHHHHHHCCCEEEEEeC----------CCH----HHHHHHHHcCCCEe-CC
Confidence 66543322 234455667777777 998865433 133 46788889999988 44
Q ss_pred --cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 --DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 --DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
...|....-.-.++++.+++.. ++++-+-.+=.. ..-+..|++.|++.|
T Consensus 151 lg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~egGI~t---peda~~AmelGAdgV 201 (248)
T cd04728 151 LGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGT---PSDAAQAMELGADAV 201 (248)
T ss_pred CCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeCCCCC---HHHHHHHHHcCCCEE
Confidence 6666665554467777777763 345544332222 356678889999854
No 252
>PLN02623 pyruvate kinase
Probab=93.60 E-value=8.7 Score=41.72 Aligned_cols=242 Identities=13% Similarity=0.104 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhHH---HHHHcCCCEEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGFE---AAVAAGAKEVAI 191 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~ie---~a~~~Gv~~v~i 191 (398)
++..++.. ++.-.+.|+|+|=+.|--++ .|..++.+.++.. .++.+.+..-+..+++ .-++ |+|.|.|
T Consensus 276 lTekD~~d-i~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgImI 347 (581)
T PLN02623 276 ITEKDWED-IKFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAMV 347 (581)
T ss_pred CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEEE
Confidence 56666555 56777999999888763322 3444555555432 2344555555655544 3344 8997766
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL----SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l----~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
. -.|.-.+. ..++.....+++++.|+++|..+.+.- +|.+ .|..+| .++.+++ .+...|++.|.|
T Consensus 348 g--rgDLgvel----g~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTR---AEv~Dva-~av~dG~d~vmL 416 (581)
T PLN02623 348 A--RGDLGAEL----PIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTR---AEVSDIA-IAVREGADAVML 416 (581)
T ss_pred C--cchhhhhc----CcHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCc---hhHHHHH-HHHHcCCCEEEe
Confidence 3 33443222 236777778899999999999885321 1111 233333 4555544 355789999888
Q ss_pred c-cCcCcCCHHHHHHHHHHHHhhC----CCC-e---EEEEe--CCccchHHHHHHHHHHhCCCEEeeccccCCC------
Q 015894 268 G-DTIGVGTPGTVIPMLEAVLDAV----PVD-K---LAVHF--HDTYGQALSNILASLQMGISTVDSSVSGLGG------ 330 (398)
Q Consensus 268 ~-DT~G~~~P~~v~~lv~~l~~~~----p~~-~---l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe------ 330 (398)
. ||.=.-.|.+..++++.+..+. +.. . +.-+. |-..-+|.+....|-..++.+|=.|-.|--.
T Consensus 417 s~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~ 496 (581)
T PLN02623 417 SGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHY 496 (581)
T ss_pred cchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhh
Confidence 6 6777778998888888876532 110 0 01111 1123456666677778888888888877532
Q ss_pred ---CCCCCCCCCCccHHHHHHHHHh-CCCCC-----ccChHHHHHHHHHHHHHhCCCCC
Q 015894 331 ---CPYAKGASGNVATEDVVYMLNG-LGVRT-----NVDIRKLMIAGDFICKHLGRTSG 380 (398)
Q Consensus 331 ---cp~a~graGNa~lE~vv~~L~~-~Gi~t-----~iDl~~L~~~~~~v~~~~g~~~~ 380 (398)
|| - -.-.+-+.+...|.- .|+.+ .-|.+.+.+.+....+..|.--+
T Consensus 497 RP~~p---I-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~ 551 (581)
T PLN02623 497 RPSGT---I-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKE 551 (581)
T ss_pred CCCCC---E-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33 1 112334666666654 36532 12455555555555555565433
No 253
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=93.56 E-value=3.4 Score=41.81 Aligned_cols=126 Identities=11% Similarity=0.037 Sum_probs=76.0
Q ss_pred CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEec-cCchHHHhhhc
Q 015894 132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFA-SASESFSKSNI 204 (398)
Q Consensus 132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~ 204 (398)
+++.|-+|-.. |...| ....+++++.++.. ++..+++-+ | +.+.++...++|+.+|.+-+ +.++.. ...+
T Consensus 51 ~v~~iyfGGGT-Ps~l~-~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~-L~~l 127 (350)
T PRK08446 51 KIESVFIGGGT-PSTVS-AKFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDK-LKFL 127 (350)
T ss_pred ceeEEEECCCc-cccCC-HHHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH-HHHc
Confidence 56666665321 21111 01234455555532 345555544 3 34567888899999988854 344433 3334
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 205 NCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 205 ~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
|+. ...+.+.++++.+++.|+. |.+.++ +|.|.. +.+.+.+..+.+.+.|++.|.+
T Consensus 128 gR~--~~~~~~~~ai~~lr~~g~~~v~iDli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 128 GRI--HSQKQIIKAIENAKKAGFENISIDLI--YDTPLD---NKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred CCC--CCHHHHHHHHHHHHHcCCCEEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence 542 2244556778899999986 555565 666653 5788888889999999998765
No 254
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=93.54 E-value=1.8 Score=42.91 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc--------------
Q 015894 206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-------------- 271 (398)
Q Consensus 206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-------------- 271 (398)
.+.++.++.++.++.. ..++|.+. .+.+ -++..+.+.++.+.+.|+..|.|-|..
T Consensus 61 ~~~~e~~~~~~~I~~a---~~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~ 129 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDV---TTKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ 129 (285)
T ss_pred CCHHHHHHHHHHHHhh---cCCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence 3677777776655543 35665421 2445 689999999999999999999998875
Q ss_pred CcCCHHHHHHHHHHHHhhC--CCCeEEEE----e-CCccchHHHHHHHHHHhCCCEEee
Q 015894 272 GVGTPGTVIPMLEAVLDAV--PVDKLAVH----F-HDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 272 G~~~P~~v~~lv~~l~~~~--p~~~l~~H----~-Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.+..+++..+.|++.++.- ++..|-.. . ...+--|+.-+.++.+||||.|=.
T Consensus 130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3567788888888887652 34444444 2 224557888999999999997755
No 255
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=93.50 E-value=8.6 Score=38.08 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhc----CCCEEEEecCC-----CCCcc--cCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894 117 PAVVKVELIKLLVSS----GLAVVEATSFV-----SPKWV--PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG 185 (398)
Q Consensus 117 ~~~~k~~ia~~L~~a----Gv~~IEvG~~~-----~~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G 185 (398)
+.++.+++++.|.++ |++.|-=|+|- +|... |.+.+-=++++.+++-.+..+..=+....+++.+.+.
T Consensus 28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~- 106 (290)
T PLN03033 28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV- 106 (290)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-
Confidence 678889999999886 99999888774 22221 1111222334444433344444334577888888887
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
+|.+.|-.... +--+.++.+.+-|..|. |- ..--.+++++...++.+.+.|-+.|
T Consensus 107 ~DilQIgAr~~-----------------rqtdLL~a~~~tgkpV~--lK------kGq~~t~~e~~~aaeki~~~GN~~v 161 (290)
T PLN03033 107 ADIIQIPAFLC-----------------RQTDLLVAAAKTGKIIN--IK------KGQFCAPSVMRNSAEKVRLAGNPNV 161 (290)
T ss_pred CcEEeeCcHHH-----------------HHHHHHHHHHccCCeEE--eC------CCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 69999853211 11244556666777764 11 1122579999999999999999999
Q ss_pred EEcc---CcCcCCH-HHHHHHHHHHHhhCCCCeEEE---Ee----------------CCccchHHHHHHHHHHhCCCEEe
Q 015894 266 SLGD---TIGVGTP-GTVIPMLEAVLDAVPVDKLAV---HF----------------HDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 266 ~L~D---T~G~~~P-~~v~~lv~~l~~~~p~~~l~~---H~----------------Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.||. |.|+-.- .+++. +..+++ ...|+-+ |. =-++-+...-+.||+.+|+|.+=
T Consensus 162 iLcERG~tFgy~~lv~D~r~-ip~mk~--~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlf 238 (290)
T PLN03033 162 MVCERGTMFGYNDLIVDPRN-LEWMRE--ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIF 238 (290)
T ss_pred EEEeCCCCcCCCCcccchhh-hHHHHh--cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 8887 3333211 12222 222232 2234444 43 13455778999999999999553
No 256
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.45 E-value=3 Score=42.19 Aligned_cols=138 Identities=20% Similarity=0.142 Sum_probs=84.6
Q ss_pred HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCCC-CCCC
Q 015894 179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCVVGCPV-EGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~fg~~~-~~r~ 245 (398)
++|.++|.|.|.|...- |+. ++...+|-+.+.-.+.+.++++.+|+. |. .|.+-++..-.-+. ..-.
T Consensus 159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence 46678999998885332 221 233445567777777788888888864 54 33333331100000 0124
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD 322 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD 322 (398)
++++..++++.+.+.|+|.|.+.- +... .+....++++.+++.++..-+.....+ ...+..+++.| +|.|-
T Consensus 239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 239 PEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKADLVA 312 (338)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCCEEE
Confidence 678899999999999999998832 2221 134456778888887753224444443 57777889887 77663
No 257
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=93.45 E-value=2.1 Score=41.70 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=48.8
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
++.+.+.|+|.|-+-++.-.. +.+.+..+..+.+.++++.+|+. ++.+.+-+.. -.++++..++++.
T Consensus 117 a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~~ 184 (289)
T cd02810 117 ARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAKA 184 (289)
T ss_pred HHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHHH
Confidence 455567799988775442111 11111111223445556666654 5666544431 1356788899999
Q ss_pred HHhCCCCEEEEccCc
Q 015894 257 LYDMGCSEISLGDTI 271 (398)
Q Consensus 257 l~~~Gad~I~L~DT~ 271 (398)
+.++|+|.|.+..+.
T Consensus 185 l~~~Gad~i~~~~~~ 199 (289)
T cd02810 185 AERAGADGLTAINTI 199 (289)
T ss_pred HHHcCCCEEEEEccc
Confidence 999999999987664
No 258
>PRK05660 HemN family oxidoreductase; Provisional
Probab=93.45 E-value=3.2 Score=42.44 Aligned_cols=108 Identities=12% Similarity=0.089 Sum_probs=69.6
Q ss_pred HHHHHHHHHh-c---cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894 153 AKDVMAAIQN-V---EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE 224 (398)
Q Consensus 153 ~~~v~~~i~~-~---~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~ 224 (398)
..++++.+++ . +++.+++-+. +.+.++...++|+.+|.+-+-.-+-..-..+|+. ...+.+.++++.+++
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~ 154 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQG 154 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence 3445555553 2 3455555452 3466788899999999886544333333344442 234445567788999
Q ss_pred CCCcE-EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 225 LSIPV-RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 225 ~G~~v-~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.|+.. .+.++ +|-|.. +.+.+.+.++.+.++|++.|.+
T Consensus 155 ~G~~~v~~dli--~Glpgq---t~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 155 LGLRSFNLDLM--HGLPDQ---SLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred cCCCeEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCeEEe
Confidence 99963 45555 666653 6788888899999999998753
No 259
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=93.43 E-value=3 Score=38.33 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc----CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE----GARFPVLTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
-.+.++.+.+.|++.|++..... +..+....++++. +.....++. ..++.+.+.|++.|++...
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~a~~~gad~vh~~~~-- 90 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRYGVPLIVN--DRVDLALAVGADGVHLGQD-- 90 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHHcCCCEEecCcc--
Confidence 45677888899999999975432 1223333333221 111122332 4678899999999887322
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---cCc-C
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG---DTI-G 272 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~---DT~-G 272 (398)
+. . ...++..++.+..+. ++ + .+++. +.++.+.|+|.|.+. +|. .
T Consensus 91 ~~--------~--------~~~~~~~~~~~~~~g--~~----~-----~t~~e----~~~a~~~gaD~v~~~~~~~~~~~ 139 (212)
T PRK00043 91 DL--------P--------VADARALLGPDAIIG--LS----T-----HTLEE----AAAALAAGADYVGVGPIFPTPTK 139 (212)
T ss_pred cC--------C--------HHHHHHHcCCCCEEE--Ee----C-----CCHHH----HHHHhHcCCCEEEECCccCCCCC
Confidence 10 0 112233344555443 22 1 13443 334557899999763 211 1
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 273 VGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 273 ~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
... |..-.+.++.+++.++..++..-+ |....|.-.++.+|++.|=
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~v~a~G----GI~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 140 KDAKAPQGLEGLREIRAAVGDIPIVAIG----GITPENAPEVLEAGADGVA 186 (212)
T ss_pred CCCCCCCCHHHHHHHHHhcCCCCEEEEC----CcCHHHHHHHHHcCCCEEE
Confidence 111 111134556666555544565543 6666899999999999773
No 260
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=93.40 E-value=0.8 Score=46.39 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHHHHH
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNILAS 313 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANalaA 313 (398)
+.+++++.+.++.+.+.|+++|+|.+.... ...+.+.++++.+++.+|. +.+|.- +..|+..-..+..
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~ 155 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE 155 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999843222 2236889999999999986 444432 3467777776776
Q ss_pred H-HhCCCEEe
Q 015894 314 L-QMGISTVD 322 (398)
Q Consensus 314 l-~aGa~~VD 322 (398)
+ +||++.+.
T Consensus 156 LkeAGld~~~ 165 (351)
T TIGR03700 156 LKEAGLDSMP 165 (351)
T ss_pred HHHcCCCcCC
Confidence 6 48999776
No 261
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.35 E-value=2.7 Score=40.46 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=104.5
Q ss_pred HHHHHhcCCCEEEEecCC--CCCccc--CCCCHHHHHHHHHhcc-CCcEEEEeC------C-H----hhHHHHHHcCCCE
Q 015894 125 IKLLVSSGLAVVEATSFV--SPKWVP--QLADAKDVMAAIQNVE-GARFPVLTP------N-L----KGFEAAVAAGAKE 188 (398)
Q Consensus 125 a~~L~~aGv~~IEvG~~~--~~~~~p--~~~D~~~v~~~i~~~~-~~~l~~l~~------n-~----~~ie~a~~~Gv~~ 188 (398)
++.+.++|++.+=++++. .....| .+-+.++++..++.+. .+.+.+++- + . +-++...++|+..
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ag 101 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAG 101 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SE
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcE
Confidence 566788899998887531 111223 2345678888887653 244455542 2 2 3456778899999
Q ss_pred EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
|+|-+.-.. | ..+-=.+.++..++++.+.+..++.++.+.+ =+.++.. .....++..+=++...++|||.|.+.
T Consensus 102 i~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~A-RTDa~~~---~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 102 INIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIA-RTDAFLR---AEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp EEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEE-EECHHCH---HHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred EEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEE-ecccccc---CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 999887111 2 2222238999999998888887777854431 1111100 01123555555667778999999875
Q ss_pred cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 269 DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 269 DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
|..+++++.++.+.+ + .|+-+..+ .+. -+.-.--+.|+++|-...
T Consensus 176 ---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 176 ---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSYGN 220 (238)
T ss_dssp ---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEETS
T ss_pred ---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEEcH
Confidence 446677777766666 2 45666664 322 444445578988875443
No 262
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=93.29 E-value=0.29 Score=47.04 Aligned_cols=106 Identities=17% Similarity=0.303 Sum_probs=69.1
Q ss_pred CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894 165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE 242 (398)
Q Consensus 165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~ 242 (398)
+++++.+. |+.++++.|.+.|++.|-++.. .+.. .++. ..++.++++..+.++|+++|+.|.+ .
T Consensus 123 gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG---~YA~-a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----------G 188 (237)
T TIGR00559 123 GIEVSLFIDADKDQISAAAEVGADRIEIHTG---PYAN-AYNKKEMAEELQRIVKASVHAHSLGLKVNA----------G 188 (237)
T ss_pred CCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhc-CCCchhHHHHHHHHHHHHHHHHHcCCEEec----------C
Confidence 56666666 6788999999999999998765 2222 1222 2245699999999999999999862 1
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCEEEE-----ccCcCcCCHHHHHHHHHHHH
Q 015894 243 GMVPPSKVAYVSKQLYDMG-CSEISL-----GDTIGVGTPGTVIPMLEAVL 287 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~G-ad~I~L-----~DT~G~~~P~~v~~lv~~l~ 287 (398)
.-.+.+.+..+++ --+ ...++| ++..=++.+..|+++.+.++
T Consensus 189 HgLny~Nv~~i~~---~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 189 HGLNYHNVKYFAE---ILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred CCCCHHhHHHHHh---CCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2245555555543 223 566654 45555556666666665543
No 263
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.26 E-value=0.52 Score=43.90 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=58.4
Q ss_pred HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP 332 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp 332 (398)
-++++.++|++.|.| |...-..|..+.++++.+++++ ..+-.-+- -+..++.|.++|+|.|-+|+.|+=+
T Consensus 56 ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~-- 125 (192)
T PF04131_consen 56 EVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP-- 125 (192)
T ss_dssp HHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST--
T ss_pred HHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC--
Confidence 356677899999987 7778888999999999999988 33333332 2678899999999999999999865
Q ss_pred CCCCCCCCccHHHHHHHHHhCC
Q 015894 333 YAKGASGNVATEDVVYMLNGLG 354 (398)
Q Consensus 333 ~a~graGNa~lE~vv~~L~~~G 354 (398)
+. .|..|=-+++..|.+.+
T Consensus 126 ~t---~~~~pD~~lv~~l~~~~ 144 (192)
T PF04131_consen 126 YT---KGDGPDFELVRELVQAD 144 (192)
T ss_dssp TS---TTSSHHHHHHHHHHHTT
T ss_pred CC---CCCCCCHHHHHHHHhCC
Confidence 22 22333344444555443
No 264
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=93.22 E-value=1.7 Score=43.07 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=73.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCC-HHHHHHHHHHHHhhCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGT-PGTVIPMLEAVLDAVP 291 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~-P~~v~~lv~~l~~~~p 291 (398)
++++.+.|++.|+-|- .+.+ ++.+.+..+++.+.+.+... |.+.... ..+. ...+..++..+.++.+
T Consensus 6 ~k~lL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 75 (286)
T PRK08610 6 MKEMLIDAKENGYAVG-QYNL---------NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLN 75 (286)
T ss_pred HHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcC
Confidence 5677888999998774 2331 46788999999999999885 4444332 2223 3557888888877775
Q ss_pred -CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 292 -VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 292 -~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
.+|+.+|. |.|.-...+..|+++|.+ ++|+|-..+-+
T Consensus 76 ~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee 115 (286)
T PRK08610 76 ITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPFEE 115 (286)
T ss_pred CCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 25677654 667778889999999998 66988765443
No 265
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.19 E-value=9.9 Score=38.52 Aligned_cols=230 Identities=21% Similarity=0.192 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccC
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
+.+..++-++.|.++|.+.+-+..+. +.+++. +..+++.-++.+.+=. .+.+-.-.+++.|++.+||=-.
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp~-------~~~A~a-l~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPG- 102 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVPD-------RESAAA-FEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPG- 102 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHh-HHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCC-
Confidence 45556778889999999999998643 233332 2333332223333311 2333333567789999999322
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCE-
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVA----YVSKQLYDMGCSE- 264 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~----~~a~~l~~~Gad~- 264 (398)
|++. -++++++++.||++|+.++..+. .|+-.. +..+++-+. +.++.+.++|.+.
T Consensus 103 -------Nig~-----~e~v~~vv~~ak~~~ipIRIGVN--~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~di 168 (346)
T TIGR00612 103 -------NIGF-----RERVRDVVEKARDHGKAMRIGVN--HGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNV 168 (346)
T ss_pred -------CCCC-----HHHHHHHHHHHHHCCCCEEEecC--CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 4443 36678899999999999996665 343211 112344333 3566677788764
Q ss_pred -EEEccCcCcCCHHHHHHHHHHHHhhC--CCCeEEEEeCCccchHHHHHHHH----HHhCC-CEEeeccccCCCCCCCCC
Q 015894 265 -ISLGDTIGVGTPGTVIPMLEAVLDAV--PVDKLAVHFHDTYGQALSNILAS----LQMGI-STVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 265 -I~L~DT~G~~~P~~v~~lv~~l~~~~--p~~~l~~H~Hnd~GlA~ANalaA----l~aGa-~~VD~Sv~GlGecp~a~g 336 (398)
|+++.| .+..+-+-.+.+.+.. | +.|++-=--+.-.++-.+-.+ +..|+ |.|-+|+.+
T Consensus 169 viS~KsS----dv~~~i~ayr~la~~~dyP-LHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~--------- 234 (346)
T TIGR00612 169 VLSMKAS----DVAETVAAYRLLAERSDYP-LHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTD--------- 234 (346)
T ss_pred EEEEEcC----CHHHHHHHHHHHHhhCCCC-ceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCC---------
Confidence 566655 3333333333333333 3 122221111222222222222 24565 677777662
Q ss_pred CCCCccHHHHHHH---HHhCCC--------------CCccChHHHHHHHHHHHH-HhCCCCCCCcccccccc
Q 015894 337 ASGNVATEDVVYM---LNGLGV--------------RTNVDIRKLMIAGDFICK-HLGRTSGSKTAIALSKT 390 (398)
Q Consensus 337 raGNa~lE~vv~~---L~~~Gi--------------~t~iDl~~L~~~~~~v~~-~~g~~~~~~~pivG~~~ 390 (398)
.|.||+-.. |+.+|+ ++.+|+..+.+ .+++ ..+++.|-+.++.|.-+
T Consensus 235 ----dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~~~---~ve~~l~~~~~~l~VAVMGCvV 299 (346)
T TIGR00612 235 ----DPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEKVVR---RVQEALFHLKTPLKVAVMGCVV 299 (346)
T ss_pred ----CcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHHHHH---HHHHHHhcCCCCCEEEEECcee
Confidence 246766553 333443 24456554433 4443 44566777777777643
No 266
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=93.04 E-value=2 Score=42.43 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc--CcCC-HHHHHHHHHHHHhhCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI--GVGT-PGTVIPMLEAVLDAVP 291 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--G~~~-P~~v~~lv~~l~~~~p 291 (398)
++++.+.|++.++-|- .+.+ ++.+.+..+++.+.+.+...|-..-.. .... ...+..++..+.+.++
T Consensus 4 ~~~~l~~A~~~~yav~-Afn~---------~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVG-AFNF---------NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 4577888999999774 2321 467889999999999998865443221 2222 3557778888887775
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
.+|+.+|. |.|.-+.....|+++|++ ++|.|-..+-+
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~e 112 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHLPFEE 112 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCCCHHH
Confidence 35888884 445557889999999998 44666655443
No 267
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=93.04 E-value=7.6 Score=36.12 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=81.0
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+.+.|++-|.+. +. .+..+ .+..+..++.+.+.+. .|... .+.+....-++.+
T Consensus 23 ~~~a~~~~~~av~v~----p~------------~v~~~---~~~l~~~~~~v~~~~~----fp~g~-~~~~~k~~eve~A 78 (203)
T cd00959 23 CDEAKEYGFAAVCVN----PC------------FVPLA---REALKGSGVKVCTVIG----FPLGA-TTTEVKVAEAREA 78 (203)
T ss_pred HHHHHHcCCCEEEEc----HH------------HHHHH---HHHcCCCCcEEEEEEe----cCCCC-CcHHHHHHHHHHH
Confidence 456677788888764 21 12222 2222333444443333 35443 4455555557888
Q ss_pred HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeE----EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKL----AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l----~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
.++|||.|.+.=-.|.. .-..+.+-+..+++...+.++ +.-.-++. .=.-.+..|+++|+|+|=++ .|.+
T Consensus 79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~-~i~~a~ria~e~GaD~IKTs-TG~~- 155 (203)
T cd00959 79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE-EIIKACEIAIEAGADFIKTS-TGFG- 155 (203)
T ss_pred HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH-HHHHHHHHHHHhCCCEEEcC-CCCC-
Confidence 89999998887777744 335577778888876544443 22222222 22334667899999999999 4443
Q ss_pred CCCCCCCCCCccHHHHHHHHH
Q 015894 331 CPYAKGASGNVATEDVVYMLN 351 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~ 351 (398)
++++.+|++-.+.+
T Consensus 156 -------~~~at~~~v~~~~~ 169 (203)
T cd00959 156 -------PGGATVEDVKLMKE 169 (203)
T ss_pred -------CCCCCHHHHHHHHH
Confidence 23566666554443
No 268
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=93.00 E-value=4.9 Score=40.92 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHHHHHHHhc----cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894 153 AKDVMAAIQNV----EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE 224 (398)
Q Consensus 153 ~~~v~~~i~~~----~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~ 224 (398)
..++++.++.. ++.++++-+ + +.+-++...++|+..|.+-+-.-+-.....+|+. ...+.+.++++.+++
T Consensus 78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~ 155 (375)
T PRK05628 78 LARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARA 155 (375)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 34555555532 345555544 2 3456778888999999885543333333344442 223445567788899
Q ss_pred CCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 225 LSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 225 ~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.|+. +.+.++ +|.|.. +.+.+.+-++.+.++|++.|.+
T Consensus 156 ~g~~~v~~dli--~GlPgq---t~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 156 AGFEHVNLDLI--YGTPGE---SDDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred cCCCcEEEEEe--ccCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence 9998 776665 676754 5788888888999999988754
No 269
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.98 E-value=10 Score=37.46 Aligned_cols=178 Identities=13% Similarity=0.149 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHH----hcCCCEEEEecCC-----CCCcc--cCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894 117 PAVVKVELIKLLV----SSGLAVVEATSFV-----SPKWV--PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG 185 (398)
Q Consensus 117 ~~~~k~~ia~~L~----~aGv~~IEvG~~~-----~~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G 185 (398)
+.++.+++++.|. ++|++.+==|+|- +|... |.+..-=++++.+++-.+..+..=+....+++.+.+.
T Consensus 28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~- 106 (281)
T PRK12457 28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV- 106 (281)
T ss_pred CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-
Confidence 6678888999876 6999987776653 22211 1111122333444433455544444677888888888
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
+|.+.|-.... ++ -++++.+.+.|..|. |- ..--.++++++..++.+.+.|...|
T Consensus 107 vDilQIgAr~~----------------rn-tdLL~a~~~t~kpV~--lK------rGqf~s~~e~~~aae~i~~~Gn~~v 161 (281)
T PRK12457 107 ADVLQVPAFLA----------------RQ-TDLVVAIAKTGKPVN--IK------KPQFMSPTQMKHVVSKCREAGNDRV 161 (281)
T ss_pred CeEEeeCchhh----------------ch-HHHHHHHhccCCeEE--ec------CCCcCCHHHHHHHHHHHHHcCCCeE
Confidence 89999853211 11 145566666777764 11 1112467889999999999999998
Q ss_pred EEccC---cCcCC-HHHHHHHHHHHHhhCCCCeEEE---Ee-----------CCccchHHHHHHHHHHhCCCEE
Q 015894 266 SLGDT---IGVGT-PGTVIPMLEAVLDAVPVDKLAV---HF-----------HDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 266 ~L~DT---~G~~~-P~~v~~lv~~l~~~~p~~~l~~---H~-----------Hnd~GlA~ANalaAl~aGa~~V 321 (398)
.||.= .|+-. +.++.. |..+++.++..|+-+ |. =-++-+....+.||+.+|||.+
T Consensus 162 ilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl 234 (281)
T PRK12457 162 ILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGL 234 (281)
T ss_pred EEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 88872 12221 222322 233444334455655 43 3355567889999999999955
No 270
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=92.89 E-value=7.4 Score=35.59 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCH-hhHHHHHHcCCCEEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNL-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~-~~ie~a~~~Gv~~v~i 191 (398)
.++...-.+.++.+.++|++.|+++.-..+ +.|...-..+..+.+++..+..+. .++.+. +.++.+.++|++.|.+
T Consensus 8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 8 SADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF 86 (211)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 355566678899999999999999642111 111111111334444432233332 333342 4578888999999877
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--- 268 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--- 268 (398)
....++ ...+.++.+++.|+.+...+. +. ++.+.+.++. .++|.|.+.
T Consensus 87 h~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~~~~~~~~-----~~~d~i~~~~~~ 137 (211)
T cd00429 87 HAEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPVEVLEPYL-----DEVDLVLVMSVN 137 (211)
T ss_pred Cccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCHHHHHHHH-----hhCCEEEEEEEC
Confidence 554322 223457788888887653221 11 2233333332 226666442
Q ss_pred -cCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 269 -DTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 269 -DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
-+.|...+....+.++.+++..+ ..|+.+= -|.-..|+-.++++|++.|
T Consensus 138 ~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i 191 (211)
T cd00429 138 PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL 191 (211)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence 22333445566677777776553 3455443 3777888888999999966
No 271
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.87 E-value=1.8 Score=41.71 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=88.5
Q ss_pred hHHHHHHcCCCEEEEeccCchH-HHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASES-FSK-SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~-~~~-~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
..+.+.++|++.+.+..+.--. +-. ..-..+.++.+..++.+.+.+ ..++.+.+- . +-.+++.+.+.+
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~------~-G~g~~~~~~~~v 90 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADAD------T-GYGNALNVARTV 90 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcC------C-CCCCHHHHHHHH
Confidence 3455667798888774321110 000 011336777777776666544 445543232 1 223667888889
Q ss_pred HHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhCC---CCeEEEE-----e-CCccchHHHHHHHHH
Q 015894 255 KQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAVP---VDKLAVH-----F-HDTYGQALSNILASL 314 (398)
Q Consensus 255 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p---~~~l~~H-----~-Hnd~GlA~ANalaAl 314 (398)
+.+.+.|++.|.|-|..+ +.++++..+.+++.++... +..|-.- . .+...-|+.-+.++.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 999999999999988763 5678888888988887654 3323222 1 156777999999999
Q ss_pred HhCCCEEee
Q 015894 315 QMGISTVDS 323 (398)
Q Consensus 315 ~aGa~~VD~ 323 (398)
++|||.|=.
T Consensus 171 ~AGAD~v~v 179 (243)
T cd00377 171 EAGADGIFV 179 (243)
T ss_pred HcCCCEEEe
Confidence 999996643
No 272
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=92.82 E-value=3.1 Score=42.23 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=62.7
Q ss_pred CCcEEEEe-C---CHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeec
Q 015894 165 GARFPVLT-P---NLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVG 238 (398)
Q Consensus 165 ~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg 238 (398)
++.+++-+ + +.+-++...++|+..|.+-+ +.+|... ..+|+. ...+.+.++++.+++.|+. +.+.++ +|
T Consensus 85 ~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L-~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~G 159 (374)
T PRK05799 85 DLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLL-KYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FG 159 (374)
T ss_pred CCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cC
Confidence 34555444 2 34567888889999888754 3344333 344541 1234455677888999986 665565 66
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 239 CPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 239 ~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.|.. +.+.+.+.++.+.++|++.|.+
T Consensus 160 lPgq---t~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 160 LPNQ---TLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred CCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 6654 6788888999999999988755
No 273
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.78 E-value=9.3 Score=38.66 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc------cc-CCC--CHHHH----------HHHHH-h--ccCCcEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFV-----SPKW------VP-QLA--DAKDV----------MAAIQ-N--VEGARFP 169 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~------~p-~~~--D~~~v----------~~~i~-~--~~~~~l~ 169 (398)
+.+.-.++++.-.++|.|.|=.=.+. .+.. .+ ... +.-++ .+.+. . -.++.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 56677888888899999988774321 1110 00 000 00111 11111 1 1233333
Q ss_pred EEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894 170 VLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK 249 (398)
Q Consensus 170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~ 249 (398)
.=......++...+.|++.+.|... +. .+ ..+++++.+.|.+|- ++ .+..+.++
T Consensus 94 stpfd~~svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~E 147 (329)
T TIGR03569 94 STPFDLESADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEE 147 (329)
T ss_pred EEeCCHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence 3334677888888889998887422 11 11 245566667798875 33 23468899
Q ss_pred HHHHHHHHHhCCCC--EEEE--ccCcCcCCHHHHHH--HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 250 VAYVSKQLYDMGCS--EISL--GDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 250 l~~~a~~l~~~Gad--~I~L--~DT~G~~~P~~v~~--lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+...++.+.+.|.+ .|.| |= .++-+|..-.+ .|..+++.++ .+|++=-|- .| ...+++|+..||++|+-
T Consensus 148 i~~Av~~i~~~G~~~~~i~llhC~-s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt-~G--~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 148 IEAAVGVLRDAGTPDSNITLLHCT-TEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT-LG--IEAPIAAVALGATVIEK 222 (329)
T ss_pred HHHHHHHHHHcCCCcCcEEEEEEC-CCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC-cc--HHHHHHHHHcCCCEEEe
Confidence 99999999999986 2555 63 45555544333 4677888886 689985554 34 57779999999998864
No 274
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=92.75 E-value=4.4 Score=41.25 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=68.7
Q ss_pred HHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894 153 AKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE 224 (398)
Q Consensus 153 ~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~ 224 (398)
.+++++.+++. +.+++++-++ +.+.++...++|+..|.+-+-.-+-..-..+++. ...+.+.++++.+++
T Consensus 70 l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~ 147 (377)
T PRK08599 70 LERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKK 147 (377)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 34445555432 2235555443 3456788889999998886544332223344442 234556677899999
Q ss_pred CCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 225 LSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 225 ~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.|+. +.+.++ +|.|.. +.+.+.+.++.+.+++++.|.+
T Consensus 148 ~g~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 148 AGFDNISIDLI--YALPGQ---TIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred cCCCcEEEeee--cCCCCC---CHHHHHHHHHHHHccCCCEEee
Confidence 9987 555554 676754 5778888888899999987644
No 275
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=92.63 E-value=9.3 Score=36.69 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894 212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p 291 (398)
.+.+.++++.+++.+.+|.+-+-. . .+.....++++.+.++|++.|.+-... ...|.--.+.|+.+++.++
T Consensus 120 p~~l~~iv~av~~~~~PVsvKiR~-----~---~~~~~~~~~a~~l~~aGad~i~Vd~~~-~g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 120 KELLKEFLTKMKELNKPIFVKIRG-----N---CIPLDELIDALNLVDDGFDGIHVDAMY-PGKPYADMDLLKILSEEFN 190 (231)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCC-----C---CCcchHHHHHHHHHHcCCCEEEEeeCC-CCCchhhHHHHHHHHHhcC
Confidence 345667788888778877654441 1 133467789999999999999883222 1223345678888888775
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
.+||-- |.-=....-++..+++||+.|-.+=
T Consensus 191 ~ipIIg---NGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 191 DKIIIG---NNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred CCcEEE---ECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 334322 1111223556677778998886554
No 276
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.62 E-value=4 Score=42.96 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCc--ccCCCCHHHHHHHHHhccCC-cE--EEEeCC---HhhHHHHHHc-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKW--VPQLADAKDVMAAIQNVEGA-RF--PVLTPN---LKGFEAAVAA- 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~--~p~~~D~~~v~~~i~~~~~~-~l--~~l~~n---~~~ie~a~~~- 184 (398)
..+.++.++.++.|.+.|++.|.+.... .... .|...+..++++.+.+.++. ++ ...-+. .+-++...+.
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~ 262 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP 262 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence 4788999999999999999988775321 1100 01112345555555554443 23 222232 2334555554
Q ss_pred -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
|...+++-+ +.|+--++. +++. ...+.+.++++.+++. |+.+.++++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 263 ~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l 334 (459)
T PRK14338 263 KCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEI 334 (459)
T ss_pred ccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence 467777744 455543332 4432 2344555667777777 676766666 676765 567888888888888
Q ss_pred CCCEEE
Q 015894 261 GCSEIS 266 (398)
Q Consensus 261 Gad~I~ 266 (398)
+.+.+.
T Consensus 335 ~~~~v~ 340 (459)
T PRK14338 335 RFDKVH 340 (459)
T ss_pred CCCEeE
Confidence 887653
No 277
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.57 E-value=2 Score=43.41 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894 66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ 110 (398)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q 110 (398)
++|..+++|+++ ++..++..+... .|..+++|..+|..
T Consensus 14 G~q~~~~~f~~~----~~~~i~~~L~~a---Gv~~IEvg~~~g~g 51 (337)
T PRK08195 14 GMHAVRHQYTLE----QVRAIARALDAA---GVPVIEVTHGDGLG 51 (337)
T ss_pred cCcCCCCccCHH----HHHHHHHHHHHc---CCCEEEeecCCCCC
Confidence 678889999999 888888888865 68899999999865
No 278
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.56 E-value=1.9 Score=42.47 Aligned_cols=126 Identities=16% Similarity=0.073 Sum_probs=76.9
Q ss_pred CCHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894 173 PNLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVEGMVPPSKV 250 (398)
Q Consensus 173 ~n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~~r~~~~~l 250 (398)
-|.++.+.|-++|+-.|.+.-.+ +|...+ =+.-|-+..+.+ +..|+ -.++|.+-+ -..+
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~--~~v~R~~~~~~I----~~Ik~~V~iPVIGi~------------K~~~- 76 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMI----KEIMDAVSIPVMAKV------------RIGH- 76 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhc--CCeeecCCHHHH----HHHHHhCCCCeEEee------------ehhH-
Confidence 45666667777887555543222 343221 122222223332 22232 256664311 1233
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl 328 (398)
..=++.+.++|+|.| |-....+| ..+++..+|+.+ +.+|-.-+-+ +..++.|+++|+++|-+|+.|.
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~st-----leEal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGARN-----LGEALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCCC-----HHHHHHHHHCCCCEEEecCCCC
Confidence 344778999999999 87777788 688999999888 4444433322 5788999999999999999843
No 279
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.53 E-value=8.8 Score=35.56 Aligned_cols=174 Identities=17% Similarity=0.128 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCC-HhhHHHHHHcCCCEEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPN-LKGFEAAVAAGAKEVAI 191 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n-~~~ie~a~~~Gv~~v~i 191 (398)
.++...-.+.++.+.+.|++.|+++.-.. .+.|...-..+..+.++......+ ..++.. .+.++.+.++|++.|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v 90 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDG-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF 90 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccC-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence 35556667899999999999999964211 112221111233444443222233 233333 34677888999999777
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---- 267 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---- 267 (398)
....++ .....++.+++.|+.+...+. |. ++.+.+..+. .++|.|.+
T Consensus 91 h~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---t~~e~~~~~~-----~~~d~i~~~~~~ 141 (220)
T PRK05581 91 HVEASE----------------HIHRLLQLIKSAGIKAGLVLN-----PA---TPLEPLEDVL-----DLLDLVLLMSVN 141 (220)
T ss_pred eeccch----------------hHHHHHHHHHHcCCEEEEEEC-----CC---CCHHHHHHHH-----hhCCEEEEEEEC
Confidence 654322 223457888899987653221 11 2333333321 23564433
Q ss_pred ccCcCcCCHHHHHHHHHHHHhhCCC----CeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 268 GDTIGVGTPGTVIPMLEAVLDAVPV----DKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 268 ~DT~G~~~P~~v~~lv~~l~~~~p~----~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
+-+.|...+....+.++.+++..+. .++.+ +-|.-..|.-.+.++|++.|=
T Consensus 142 ~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~vv 196 (220)
T PRK05581 142 PGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVFV 196 (220)
T ss_pred CCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence 2233433344556666666654332 12222 348888888888889998653
No 280
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.51 E-value=0.76 Score=42.92 Aligned_cols=171 Identities=12% Similarity=0.017 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--E-EEeCC-H-hhHHHHHHcCCCEEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--P-VLTPN-L-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~-~l~~n-~-~~ie~a~~~Gv~~v~i 191 (398)
+.++-+++++.+... +..+|+|.+.-..+ ..++++.+++.....+ - +.+.+ . .-++.+.+.|+|.|.+
T Consensus 14 ~~~~~~~~~~~~~~~-~~~vk~g~~l~~~~------G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtv 86 (215)
T PRK13813 14 DRERALKIAEELDDY-VDAIKVGWPLVLAS------GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIV 86 (215)
T ss_pred CHHHHHHHHHhcccc-CCEEEEcHHHHHhh------CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEE
Confidence 455566677666443 57899996421111 1244555654332111 1 11222 2 2347888999998887
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI 271 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~ 271 (398)
..-... +.+..+++.+++.|..+.+.+... .+.....-.+++..++....+.|.+...+.
T Consensus 87 h~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~--- 146 (215)
T PRK13813 87 HGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAP--- 146 (215)
T ss_pred cCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEEC---
Confidence 554221 235567888999999876544432 121111113456666777778898765422
Q ss_pred CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH--HHHHHHHhCCCEEee
Q 015894 272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS--NILASLQMGISTVDS 323 (398)
Q Consensus 272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A--NalaAl~aGa~~VD~ 323 (398)
....+.++.+++..+. .+.+ =|-|.... |.-.++++|++.+-.
T Consensus 147 -----~~~~~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 147 -----ATRPERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred -----CCcchhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 1222344566665543 1111 23344433 477889999997743
No 281
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=92.48 E-value=5.4 Score=39.55 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.+.+.++++.+++.|+.+.++++ +|.|.. +.+.+.+.++.+.+++++.|.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 34556788899999999887776 677754 5688888899999999987764
No 282
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.40 E-value=7.3 Score=34.32 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=79.2
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+.++.+.+.|++.+.+-....... ......+ ..+....+..+..+.+.+... + ..+.+...++
T Consensus 16 ~~~~~~~~~G~~~v~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~a~ 78 (200)
T cd04722 16 ELAKAAAEAGADAIIVGTRSSDPE--EAETDDK-------EVLKEVAAETDLPLGVQLAIN----D----AAAAVDIAAA 78 (200)
T ss_pred HHHHHHHcCCCCEEEEeeEEECcc--cCCCccc-------cHHHHHHhhcCCcEEEEEccC----C----chhhhhHHHH
Confidence 456677778888877754322211 0000000 112223334566665444321 1 1222333367
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
.+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.+.....+. ..+.|++.|...-..-+.
T Consensus 79 ~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~~~ 149 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGGGG 149 (200)
T ss_pred HHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcCCC
Confidence 8889999999999988765 8889999999999887667666666554433221 567899998766544333
No 283
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.37 E-value=4.7 Score=42.96 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC-ch
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA-SE 197 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~-Sd 197 (398)
-++.++.|.++|++.|++...... .....+.++.+++ .|+..+.+ -+-+.++.+.++++|+|.|.+-++. |-
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~ 316 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI 316 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc
Confidence 388999999999999999753110 0112345555553 35544433 2346789999999999999874321 10
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894 198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG 277 (398)
Q Consensus 198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~ 277 (398)
-..+...++... .+..+.++.+.+++.|+.+- ++.+-.++.++ ++ +.++||+.+.+.-.. ..|
T Consensus 317 ~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~di---~k-Ala~GA~~Vm~G~~~--a~~- 379 (495)
T PTZ00314 317 CITQEVCAVGRP-QASAVYHVARYARERGVPCI---------ADGGIKNSGDI---CK-ALALGADCVMLGSLL--AGT- 379 (495)
T ss_pred cccchhccCCCC-hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHHH---HH-HHHcCCCEEEECchh--ccc-
Confidence 000001122222 23455677788888887653 24454455443 33 345999998876531 111
Q ss_pred HHHHHHHHHHhhCCCCeE---EEEeCCccchHHHHHHH
Q 015894 278 TVIPMLEAVLDAVPVDKL---AVHFHDTYGQALSNILA 312 (398)
Q Consensus 278 ~v~~lv~~l~~~~p~~~l---~~H~Hnd~GlA~ANala 312 (398)
.+.|...+ +-....-+|||...+..
T Consensus 380 ----------~e~~~~~~~~~g~~~k~yrGm~s~~a~~ 407 (495)
T PTZ00314 380 ----------EEAPGEYFFKDGVRLKVYRGMGSLEAML 407 (495)
T ss_pred ----------cccCCceeeeCCeEEEEEeccchHHHhh
Confidence 12343211 23445578998766554
No 284
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=92.33 E-value=16 Score=39.27 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=71.3
Q ss_pred HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
.+.++...+.|+.+|.+-+-.-+-.....+|+. ...+.+.++++.+|+.|+.+.+.++ +|.|.. +++...+-+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~t~ 278 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLEMF 278 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHHHH
Confidence 466888899999988875433222222223331 2234445677889999998877776 677754 466667767
Q ss_pred HHHHh---CCCCEEEEccCc-------------Cc---CCHHHHHHHHHHHHhhCC
Q 015894 255 KQLYD---MGCSEISLGDTI-------------GV---GTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 255 ~~l~~---~Gad~I~L~DT~-------------G~---~~P~~v~~lv~~l~~~~p 291 (398)
+.+.+ .++|.|.|=-+. |- .++++..+++..+.+.+|
T Consensus 279 ~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp 334 (522)
T TIGR01211 279 REIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMP 334 (522)
T ss_pred HHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 77764 889987765522 32 345667777777777787
No 285
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=92.32 E-value=7.6 Score=39.44 Aligned_cols=106 Identities=10% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHHHh-c-cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 015894 154 KDVMAAIQN-V-EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI 227 (398)
Q Consensus 154 ~~v~~~i~~-~-~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~ 227 (398)
+++++.+++ + ++..+++-+ | +.+.++...++|+.+|.+-+-.-+-..-..+|+. ...+.+.++++.+++.|+
T Consensus 76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~ 153 (353)
T PRK05904 76 DILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGI 153 (353)
T ss_pred HHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Confidence 344445543 2 234555544 3 3456788889999998885543332333345542 223455677889999998
Q ss_pred c-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894 228 P-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266 (398)
Q Consensus 228 ~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~ 266 (398)
. +.+.++ +|.|.. +.+.+.+.++.+.+.+++.|.
T Consensus 154 ~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is 188 (353)
T PRK05904 154 YNISCDFL--YCLPIL---KLKDLDEVFNFILKHKINHIS 188 (353)
T ss_pred CcEEEEEe--ecCCCC---CHHHHHHHHHHHHhcCCCEEE
Confidence 6 766666 666753 678888888888999988663
No 286
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.32 E-value=10 Score=35.93 Aligned_cols=202 Identities=16% Similarity=0.053 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
.+-.++++.|.+.|++.|=+.-.......+ -.+. ++++.+++..++++.+- +++.++++..++.|++.|.+-..
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~-~~~~-~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~-- 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGR-ETML-DVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA-- 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccC-cccH-HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch--
Confidence 366789999999999955554322110000 0122 34444544334444443 36788999999999998765321
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeee--------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCV--------VGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~--------fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
.+ +..+.+.++++ +.+. .+.+.+-.- +-.......+.....++++.+.+.|++.|.+
T Consensus 103 -~~----------~~p~~~~~i~~---~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v 168 (243)
T cd04731 103 -AV----------ENPELIREIAK---RFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL 168 (243)
T ss_pred -hh----------hChHHHHHHHH---HcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence 11 01122223333 3332 122222110 0000000112345567788899999999888
Q ss_pred --ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh-CCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894 268 --GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM-GISTVDSSVSGLGGCPYAKGASGNVATE 344 (398)
Q Consensus 268 --~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a-Ga~~VD~Sv~GlGecp~a~graGNa~lE 344 (398)
-+..|..... -.++++.+++..+ +|+-.-+--.. ...+..+++. ||+.|=+ |-.= -.|..+++
T Consensus 169 ~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~~---~~di~~~l~~~g~dgv~v---g~al------~~~~~~~~ 234 (243)
T cd04731 169 TSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAGK---PEHFVEAFEEGGADAALA---ASIF------HFGEYTIA 234 (243)
T ss_pred eccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCCC---HHHHHHHHHhCCCCEEEE---eHHH------HcCCCCHH
Confidence 4444443332 3456777776553 45555442221 2334444554 6664422 2111 24556677
Q ss_pred HHHHHHHh
Q 015894 345 DVVYMLNG 352 (398)
Q Consensus 345 ~vv~~L~~ 352 (398)
++...|++
T Consensus 235 ~~~~~~~~ 242 (243)
T cd04731 235 ELKEYLAE 242 (243)
T ss_pred HHHHHHhh
Confidence 77666643
No 287
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.30 E-value=3.1 Score=40.75 Aligned_cols=180 Identities=19% Similarity=0.234 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCC-CHHHHHHHHHhccCCcEEEEeC---C---HhhHHHHHHcCCCEEE
Q 015894 118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLA-DAKDVMAAIQNVEGARFPVLTP---N---LKGFEAAVAAGAKEVA 190 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~-D~~~v~~~i~~~~~~~l~~l~~---n---~~~ie~a~~~Gv~~v~ 190 (398)
.++...+++.+.+.|.+.+-..........|... |...+ ++.... ..|.+ + ...+|.|+..|++-|.
T Consensus 42 l~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvpli---vkl~~~---t~l~~~~~~~~~~~~ve~ai~lgadAV~ 115 (265)
T COG1830 42 LEDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLI---VKLNGS---TSLSPDPNDQVLVATVEDAIRLGADAVG 115 (265)
T ss_pred ccCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEE---EEeccc---cccCCCcccceeeeeHHHHHhCCCcEEE
Confidence 4444567888889999988886432111111111 11100 000000 01111 1 1257889999999665
Q ss_pred E--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCHHHHHHHHHHHHhCCCCEEE
Q 015894 191 I--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVPPSKVAYVSKQLYDMGCSEIS 266 (398)
Q Consensus 191 i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~~~~l~~~a~~l~~~Gad~I~ 266 (398)
+ ++. |+ +-.+.++.+.++++.|.++|+.+.. +++--|.-+.. ..+++.+...++...++|+|.|-
T Consensus 116 ~~Vy~G-se---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK 184 (265)
T COG1830 116 ATVYVG-SE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK 184 (265)
T ss_pred EEEecC-Cc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe
Confidence 4 333 11 2246889999999999999998752 33333322212 36778888889999999999875
Q ss_pred EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC---CccchHHHHHHHHHHhCCCEEe
Q 015894 267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH---DTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 267 L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H---nd~GlA~ANalaAl~aGa~~VD 322 (398)
..=| ..|+.+++.++. .| +|+-+-+= ++.--++.-.-+|+++|+..+.
T Consensus 185 ~~yt---g~~e~F~~vv~~----~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~ 235 (265)
T COG1830 185 TKYT---GDPESFRRVVAA----CG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA 235 (265)
T ss_pred ecCC---CChHHHHHHHHh----CC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence 4332 244555555554 34 34444332 2455677888888899887554
No 288
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=92.29 E-value=10 Score=39.99 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHH-----HhcC----CCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHH
Q 015894 116 VPAVVKVELIKLL-----VSSG----LAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVA 183 (398)
Q Consensus 116 ~~~~~k~~ia~~L-----~~aG----v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~ 183 (398)
++.+...+-++.+ .+.| .|.|.+++... |++.+...++.+ .+..++.-+.+.+-++++++
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAle 173 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALE 173 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHH
Confidence 4556656666666 5667 99999997542 344455555533 35667667788899999999
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
.|.+..-+..+++. +++.++.+.|+++|..+.+ + .+ +.+.+.++.+.+.++|..
T Consensus 174 agad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~----~~-----dl~~L~~lv~~~~~~GI~ 227 (450)
T PRK04165 174 VVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K----AP-----NLEELKELVEKLQAAGIK 227 (450)
T ss_pred hcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E----ch-----hHHHHHHHHHHHHHcCCC
Confidence 99998777766552 3455667788888887752 2 11 268888899999999997
Q ss_pred EEEEccCc
Q 015894 264 EISLGDTI 271 (398)
Q Consensus 264 ~I~L~DT~ 271 (398)
.|.|==..
T Consensus 228 dIILDPg~ 235 (450)
T PRK04165 228 DLVLDPGT 235 (450)
T ss_pred cEEECCCC
Confidence 77663333
No 289
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=92.28 E-value=6 Score=39.71 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=81.4
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~ 245 (398)
+++.++|.|.|-|-.. +|+. .....+|-+.++-.+...++++.+|+. | +.+.+-++..-. .....
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~--~~~g~ 238 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW--VEGGW 238 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc--CCCCC
Confidence 4667899998887542 1221 334456778888888888888888865 3 344443442110 12335
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcC--------CHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHHHHh
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVG--------TPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILASLQM 316 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~--------~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaAl~a 316 (398)
+++...++++.+.++|+|.|.+. .|.. .|....++.+.+++.++ +||.. -.-.+ ...+..+++.
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~G~i~t----~~~a~~~l~~ 311 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAVGLITD----PEQAEAILES 311 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEeCCCCC----HHHHHHHHHc
Confidence 78899999999999999998863 2211 12223456677777764 34432 22222 3556667777
Q ss_pred C-CCEE
Q 015894 317 G-ISTV 321 (398)
Q Consensus 317 G-a~~V 321 (398)
| +|.|
T Consensus 312 g~aD~V 317 (336)
T cd02932 312 GRADLV 317 (336)
T ss_pred CCCCee
Confidence 7 5654
No 290
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=92.25 E-value=3.2 Score=41.61 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE---c-----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISL---G-----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a 316 (398)
.+++.+.++++.+.++|+|.|.| | +-.|...+..+.++++.+++... +||.+-.--+......-+.++.++
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAA 187 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHc
Confidence 35788899999999999997644 1 33344445778899999998764 467776655555455566667789
Q ss_pred CCCEEeec
Q 015894 317 GISTVDSS 324 (398)
Q Consensus 317 Ga~~VD~S 324 (398)
||+.|..+
T Consensus 188 Gadgi~~~ 195 (325)
T cd04739 188 GADGLVLF 195 (325)
T ss_pred CCCeEEEE
Confidence 99977543
No 291
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=92.25 E-value=5.4 Score=40.36 Aligned_cols=136 Identities=20% Similarity=0.110 Sum_probs=81.4
Q ss_pred HHHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCC
Q 015894 178 FEAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGM 244 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r 244 (398)
.++|.++|.|.|.|... +|+. +.+..+|-+.++-.+...++++.+|+. |.. |.+-++.. .. ..+.
T Consensus 143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~-D~-~~~g 220 (353)
T cd02930 143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML-DL-VEGG 220 (353)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccc-cc-CCCC
Confidence 34667899999988542 2332 344456667777778888888888874 554 33223311 00 1123
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcC---C-------H-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVG---T-------P-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS 313 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~-------P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA 313 (398)
.+++...++++.+.++|+|.|.+ |.|.. . | .....+.+.+++.++ +||..-.--+ ....+..+
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVIASNRIN---TPEVAERL 294 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEEEcCCCC---CHHHHHHH
Confidence 57889999999999999999987 23321 1 1 113445667777664 3455433211 13556666
Q ss_pred HHhC-CCEE
Q 015894 314 LQMG-ISTV 321 (398)
Q Consensus 314 l~aG-a~~V 321 (398)
++.| +|.|
T Consensus 295 i~~g~~D~V 303 (353)
T cd02930 295 LADGDADMV 303 (353)
T ss_pred HHCCCCChh
Confidence 7766 5544
No 292
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=92.24 E-value=5.9 Score=40.08 Aligned_cols=176 Identities=14% Similarity=0.102 Sum_probs=111.0
Q ss_pred CCCcccCCCC----CCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CCCcccCCCCHHHHHHHHHhccCCcEEEEeC---
Q 015894 103 VGPRDGLQNE----KNIVPAVVKVELIKLLVSSGLAVVEATSFV--SPKWVPQLADAKDVMAAIQNVEGARFPVLTP--- 173 (398)
Q Consensus 103 ~TLRDG~Q~~----~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~--~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--- 173 (398)
|+.-+|..+. ...+..+.-++-.+...+.--+-+|+-... .|-..|.+ .++.+.++.++++.+.++-.
T Consensus 124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~ 200 (414)
T COG2100 124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGV 200 (414)
T ss_pred EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCce
Confidence 4555666554 245678888888888888878888885432 23333433 46677888888887766643
Q ss_pred --CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 174 --NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 174 --n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
+.+-++...++|+|+|.+.+.+=|.-....+---....++.+.++++++.+.|+.|- ++-.+ -| -++.++..
T Consensus 201 ~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvl--IaPv~-lP---G~ND~E~~ 274 (414)
T COG2100 201 LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVL--IAPVW-LP---GVNDDEMP 274 (414)
T ss_pred eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEE--Eeeee-cC---CcChHHHH
Confidence 456688889999999999876666543333322223346777788899999999875 33322 11 14567777
Q ss_pred HHHHHHHhCCCC--------EEEEccCcCc----CCHHHHHHHHHHHH
Q 015894 252 YVSKQLYDMGCS--------EISLGDTIGV----GTPGTVIPMLEAVL 287 (398)
Q Consensus 252 ~~a~~l~~~Gad--------~I~L~DT~G~----~~P~~v~~lv~~l~ 287 (398)
++++.+.+.|+- .-++.=-.|- +.|....++.+.|+
T Consensus 275 ~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLr 322 (414)
T COG2100 275 KIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLR 322 (414)
T ss_pred HHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHH
Confidence 888888877651 1244444442 44555555555554
No 293
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.24 E-value=5 Score=39.23 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCCEEE-EccCcCcCCHHHHHHHHHHHHh
Q 015894 247 PSKVAYVSKQLYDMGCSEIS-LGDTIGVGTPGTVIPMLEAVLD 288 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~lv~~l~~ 288 (398)
.+...++++.+.++|+|.+. ++=.....++.++.+.++.+.+
T Consensus 82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh
Confidence 44555555555555555432 2223333445555555555543
No 294
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=92.21 E-value=9.1 Score=39.68 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC---CC-CCcccCCCCHHHHHHHHHhccCCcEEEE---eC---CHhhHHHHHHc
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF---VS-PKWVPQLADAKDVMAAIQNVEGARFPVL---TP---NLKGFEAAVAA 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l---~~---n~~~ie~a~~~ 184 (398)
..+.+..++-++.|.+.|++.|-+... .. .++. ......++++.+...++.....+ .+ +.+-++...++
T Consensus 167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~-~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~ 245 (429)
T TIGR00089 167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLK-GETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAEN 245 (429)
T ss_pred CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCC-CCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhC
Confidence 567888888888898999998877521 11 1110 01234566666665544322222 23 22335666666
Q ss_pred C--CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894 185 G--AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELS--IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 185 G--v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~ 259 (398)
| ...+.+- =+.|+--++ .+++. ...+.+.++++.+++.| +.+.++++ +|.|.+ +.+.+.+.++.+.+
T Consensus 246 ~~~~~~l~igiES~s~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--vG~PgE---T~ed~~~tl~~i~~ 317 (429)
T TIGR00089 246 PKVCKHLHLPVQSGSDRILK-RMNRK--YTREEYLDIVEKIRAKIPDAAITTDII--VGFPGE---TEEDFEETLDLVEE 317 (429)
T ss_pred CCccCceeeccccCChHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 4 7777773 355655444 35543 23455667788888888 66665555 777766 57788888888888
Q ss_pred CCCCEEEE
Q 015894 260 MGCSEISL 267 (398)
Q Consensus 260 ~Gad~I~L 267 (398)
.+.+.+.+
T Consensus 318 ~~~~~~~~ 325 (429)
T TIGR00089 318 VKFDKLHS 325 (429)
T ss_pred cCCCEeec
Confidence 88877653
No 295
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=92.21 E-value=0.89 Score=44.03 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=92.4
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSK 255 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~ 255 (398)
|+=.....-+|.+-+...+|-.+.+ +.+++-|+.++++|+.|. +|. -.+-.+....+.++.+
T Consensus 29 dlLe~ag~yID~~K~g~Gt~~l~~~-----------~~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl~ 91 (244)
T PF02679_consen 29 DLLESAGDYIDFLKFGWGTSALYPE-----------EILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYLE 91 (244)
T ss_dssp HHHHHHGGG-SEEEE-TTGGGGSTC-----------HHHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhhhhccEEEecCceeeecCH-----------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHHH
Confidence 3333334458999998877765422 335677899999999875 221 0011112345566788
Q ss_pred HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEeCC-------ccchHHHHHHHHHHhCCCEE--eecc
Q 015894 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHD-------TYGQALSNILASLQMGISTV--DSSV 325 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hn-------d~GlA~ANalaAl~aGa~~V--D~Sv 325 (398)
.+.++|.+.|-+.|.+--+.+.+-.++|+.++++ +- +.-++.-.+ |...-+-.+...++|||+.| ++-=
T Consensus 92 ~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarE 170 (244)
T PF02679_consen 92 ECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARE 170 (244)
T ss_dssp HHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TT
T ss_pred HHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeec
Confidence 8889999999999999999999999999999876 32 223333332 35567788899999999955 5543
Q ss_pred c---cCCCCCCCCCCCCCccHHHHHHHHHhCC
Q 015894 326 S---GLGGCPYAKGASGNVATEDVVYMLNGLG 354 (398)
Q Consensus 326 ~---GlGecp~a~graGNa~lE~vv~~L~~~G 354 (398)
. |+=. ..|+...+.+-..++..+
T Consensus 171 sG~~Gi~~------~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 171 SGKGGIYD------NDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp T--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred cCCCCccC------CCCCccHHHHHHHHHhCC
Confidence 3 4444 688999888888776554
No 296
>PRK07094 biotin synthase; Provisional
Probab=92.14 E-value=3.3 Score=41.09 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccC-cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH-HHhCCCEEe
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDT-IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS-LQMGISTVD 322 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA-l~aGa~~VD 322 (398)
.+++.+.+.++.+.+.|++.|.|.+. ........+.++++.+++. +++ .+|++. |.-....+.. .++|++.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l--~i~~~~--g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDV--AITLSL--GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCc--eEEEec--CCCCHHHHHHHHHcCCCEEE
Confidence 36788888888888888888888632 2334567788888888776 443 333322 3222233333 358888887
Q ss_pred eccccC
Q 015894 323 SSVSGL 328 (398)
Q Consensus 323 ~Sv~Gl 328 (398)
.++-+.
T Consensus 145 ~glEs~ 150 (323)
T PRK07094 145 LRHETA 150 (323)
T ss_pred eccccC
Confidence 666554
No 297
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.12 E-value=9.9 Score=35.79 Aligned_cols=136 Identities=19% Similarity=0.175 Sum_probs=79.8
Q ss_pred EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCC--CC
Q 015894 168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVE--GM 244 (398)
Q Consensus 168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~--~r 244 (398)
+-+.+.+..++..|.+.|+++|-+....+. =|.|+.. ..++.++ +..+++.+-|= |-. ..
T Consensus 3 lEvcv~s~~~a~~A~~~GAdRiELc~~l~~------GGlTPS~------g~i~~~~~~~~ipv~vMIR-----pr~gdF~ 65 (201)
T PF03932_consen 3 LEVCVESLEDALAAEAGGADRIELCSNLEV------GGLTPSL------GLIRQAREAVDIPVHVMIR-----PRGGDFV 65 (201)
T ss_dssp EEEEESSHHHHHHHHHTT-SEEEEEBTGGG------T-B---H------HHHHHHHHHTTSEEEEE-------SSSS-S-
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEECCCccC------CCcCcCH------HHHHHHHhhcCCceEEEEC-----CCCCCcc
Confidence 345567888999999999999999765432 1444432 2233333 56777664332 322 24
Q ss_pred CCHHHHHH---HHHHHHhCCCCEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCC
Q 015894 245 VPPSKVAY---VSKQLYDMGCSEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGI 318 (398)
Q Consensus 245 ~~~~~l~~---~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa 318 (398)
|+++++.. -++.+.++|++.|.+. +.-|...-..+.++++... ..++.||-=-|.=.-...++..+ +.|+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~ 141 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGF 141 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCC
Confidence 66665554 4667778999986553 5566666667777776653 46789987666555566666655 7899
Q ss_pred CEEeec
Q 015894 319 STVDSS 324 (398)
Q Consensus 319 ~~VD~S 324 (398)
++|=||
T Consensus 142 ~rVLTS 147 (201)
T PF03932_consen 142 DRVLTS 147 (201)
T ss_dssp SEEEES
T ss_pred CEEECC
Confidence 999887
No 298
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.08 E-value=12 Score=36.20 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCC-CHHHHHHHHHhc--cCCcEEEEe-----C------CH---
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLA-DAKDVMAAIQNV--EGARFPVLT-----P------NL--- 175 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~-D~~~v~~~i~~~--~~~~l~~l~-----~------n~--- 175 (398)
+..++=.+|+.+++ ++|+|.||....-+....-.+. +.++.+...+.+ .++++..+| | +.
T Consensus 15 p~~~sW~erl~~AK---~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r 91 (287)
T COG3623 15 PNGFSWLERLALAK---ELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATR 91 (287)
T ss_pred cCCCCHHHHHHHHH---HcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHH
Confidence 45677888888876 5799999998654322111111 234555555432 344544443 2 10
Q ss_pred --------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894 176 --------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247 (398)
Q Consensus 176 --------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~ 247 (398)
+.++.|.+.|++.|.+.-- |++-+..-.-|++..++.++.+++.|.+.+....+.+|.. |. ..+.
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQLAGY--DVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt---pf--m~sI 164 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQLAGY--DVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDT---PF--MNSI 164 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEeeccc--eeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc---HH--HHHH
Confidence 1245667788888776311 2222222222566677777888888887776665555521 11 1123
Q ss_pred HHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 248 SKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
+.++.+.+ ..+-.. ...+| +|.++... .++...+..-.+. ...+|+-||+-- ..+.-
T Consensus 165 sk~~~~~~---~I~sP~f~vYPD-iGNlsaw~-ndv~~El~lG~~~-I~aiHlKDTy~v----------------te~~~ 222 (287)
T COG3623 165 SKWLKYDK---YINSPWFTVYPD-IGNLSAWN-NDVQSELQLGIDK-IVAIHLKDTYAV----------------TETSP 222 (287)
T ss_pred HHHHHHHH---HhCCCcEEecCC-cccHhhhh-hhHHHHHHcCcCc-eEEEEecccccc----------------cccCC
Confidence 33333322 223333 33444 45554433 2334444433333 477888888631 11111
Q ss_pred c-CCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894 327 G-LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI 366 (398)
Q Consensus 327 G-lGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~ 366 (398)
| +-.- |-+.|++.-+++...|+++++.-.+=++...+
T Consensus 223 GqFrdv---pfGeG~Vdf~~~f~~lk~~ny~gpfLIEMWse 260 (287)
T COG3623 223 GQFRDV---PFGEGCVDFEECFKTLKQLNYRGPFLIEMWSE 260 (287)
T ss_pred CccccC---CcCCcchhHHHHHHHHHHhCCCCceehhhhhh
Confidence 1 1111 22468999999999999988765554444433
No 299
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.07 E-value=9.2 Score=39.90 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC---CC-C-CcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF---VS-P-KWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~-~-~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~ 183 (398)
..+.++.++=++.|.+.|++.|.+... .. . ..-+......++++.+.+.++. ++.+..+. .+-++...+
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~ 254 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYAD 254 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHc
Confidence 467888888888888899998876421 11 0 0001111345566665554443 33322232 233555566
Q ss_pred cC--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 184 AG--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 184 ~G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
.| ...+++-+ +.|+.-++ .+++. ...+.+.++++.++++ |+.+.++++ +|.|.+ +.+.+.+..+.+.
T Consensus 255 ~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgE---T~ed~~~tl~~i~ 326 (444)
T PRK14325 255 LPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGE---TDEDFEATMKLIE 326 (444)
T ss_pred CCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHH
Confidence 64 67777743 44544433 34443 2345667788888887 667776666 677866 4677777777788
Q ss_pred hCCCCEEE
Q 015894 259 DMGCSEIS 266 (398)
Q Consensus 259 ~~Gad~I~ 266 (398)
+.+.+.+.
T Consensus 327 ~~~~~~~~ 334 (444)
T PRK14325 327 DVGFDQSF 334 (444)
T ss_pred hcCCCeee
Confidence 88877654
No 300
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.05 E-value=11 Score=35.80 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=78.1
Q ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCCCCe----EEEEeCCccch
Q 015894 233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVPVDK----LAVHFHDTYGQ 305 (398)
Q Consensus 233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~~~----l~~H~Hnd~Gl 305 (398)
++.+.|.|....++..++.+ ++.+.+.|||.|-+.=-.|.+. -..+.+-++.+++...+.+ ++...=++.-+
T Consensus 56 v~tVigFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei 134 (211)
T TIGR00126 56 ICTVVGFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI 134 (211)
T ss_pred EEEEeCCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence 44456678755444455555 5678889999998887788544 4667777777777543333 33332222333
Q ss_pred HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC----CCC--Ccc-ChHHHHHHHHHHHHHhCC
Q 015894 306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL----GVR--TNV-DIRKLMIAGDFICKHLGR 377 (398)
Q Consensus 306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~--t~i-Dl~~L~~~~~~v~~~~g~ 377 (398)
. -.+..|+++||++|=+|-+ .+ .+.+..|++..+.+.. ++. =|+ +++...+..+.-.+.+|.
T Consensus 135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 3 5566789999999999854 22 2346667665554421 111 122 344555544444455554
No 301
>PRK06801 hypothetical protein; Provisional
Probab=92.04 E-value=2 Score=42.59 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcC-cCCHHHHHHHHHHHHhhCC
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIG-VGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G-~~~P~~v~~lv~~l~~~~p 291 (398)
.++++.+.|++.|+-|-+ +. -.+.+.+..+++.+.+.+... |.+....- ...+..+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-fn---------~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALGA-FN---------VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-Ee---------eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 356778899999998752 22 146789999999999998774 55544332 3455778888888888775
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
+|+.+|. |.|.-+..+..|+++|++.| |+|-..+-+ |. -+.+++...+.+|+
T Consensus 75 -vpV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l~~ee---------Ni~~t~~v~~~a~~~gv 129 (286)
T PRK06801 75 -IPVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTLEYEE---------NVRQTREVVKMCHAVGV 129 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence 4677765 55777888999999999854 666554433 33 34455555555554
No 302
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=91.91 E-value=10 Score=37.61 Aligned_cols=132 Identities=16% Similarity=0.115 Sum_probs=77.1
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
.++.++..|+..+.+... +. ...+.|.+.++.++.+.+.++.++ +.|+.+...++. + . ..+++...+.++
T Consensus 77 ~~~e~~~~Gv~y~E~r~~--p~-~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~---r--~~~~~~~~~~~~ 147 (324)
T TIGR01430 77 YVEKAAKDGVVYAEVFFD--PQ-LHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M---R--HKQPEAAEETLE 147 (324)
T ss_pred HHHHHHHcCCEEEEEEeC--cc-ccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e---C--CCCHHHHHHHHH
Confidence 345667889976666543 21 122457788999997777776664 568777644442 1 1 124667777777
Q ss_pred HHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCCCEE
Q 015894 256 QLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGISTV 321 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~V 321 (398)
.+.+++.+.+.=.|..| ...|..+...+...++. +.++.+|++.+.+.. +...++ +.|++++
T Consensus 148 ~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~--g~~i~~Ha~E~~~~~--~~~~~~~~~g~~ri 213 (324)
T TIGR01430 148 LAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIAREL--GLHLTVHAGELGGPE--SVREALDDLGATRI 213 (324)
T ss_pred HHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHC--CCCeEEecCCCCChH--HHHHHHHHcCchhc
Confidence 66666654332223332 23356666666665542 467889998763321 334454 5787543
No 303
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=91.91 E-value=2.5 Score=41.86 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTI-GVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~-G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.|+-|- .+.+ ++.+.+..+++.+.+.+...| .+.... -.+....+..++..+.++.+
T Consensus 6 ~k~iL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 74 (286)
T PRK12738 6 TKYLLQDAQANGYAVP-AFNI---------HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN- 74 (286)
T ss_pred HHHHHHHHHHCCceEE-EEEe---------CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-
Confidence 4677888999999873 3332 367889999999999998754 433322 22345667888888888775
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHh
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNG 352 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~ 352 (398)
+|+.+| =|.|..+..+..|+++|.+ ++|+|-..+-+ |. -|-+++.+.+.
T Consensus 75 VPValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~evv~~Ah~ 126 (286)
T PRK12738 75 MPLALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHS 126 (286)
T ss_pred CCEEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence 467765 4778889999999999998 66999877665 44 45566666653
No 304
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=91.90 E-value=13 Score=36.02 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH---Hh-ccCCcEEEEeCCH-h-------------hH
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI---QN-VEGARFPVLTPNL-K-------------GF 178 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~n~-~-------------~i 178 (398)
+.++.++-++.+...|+|.||+=...-. .+.+.+.+...+ +. .++..+..-+|.. + =+
T Consensus 26 ~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 26 TLEEVLAEALAISKYDADIIEWRADFLE----KISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEechhh----ccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 3455566677777889999999653211 112333333333 32 3344444444421 1 14
Q ss_pred HHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHH
Q 015894 179 EAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQ 256 (398)
Q Consensus 179 e~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~ 256 (398)
+.+++.| ++.|.|-...++ +.+.+.++.+++.|..+-+ ++- +... .+.+.+.++.+.
T Consensus 102 ~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~~~~~kvI~--S~H----~f~~tP~~~~l~~~~~~ 160 (253)
T PRK02412 102 KAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAHEHGVKVVL--SYH----DFEKTPPKEEIVERLRK 160 (253)
T ss_pred HHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHHHcCCEEEE--eeC----CCCCCcCHHHHHHHHHH
Confidence 5677788 899998654322 2345667788888887653 321 1112 233678889999
Q ss_pred HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh---CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894 257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA---VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333 (398)
Q Consensus 257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~---~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~ 333 (398)
+.++|+|.+-|+=+. -++.++.+++...++. .+..|+-.=.=-.. +...-+.+-..|-...-+++.. ..
T Consensus 161 ~~~~gaDivKia~~a--~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~--G~~SRil~~~~GS~~ty~~~~~-~s--- 232 (253)
T PRK02412 161 MESLGADIVKIAVMP--QSEQDVLTLLNATREMKELYADQPLITMSMGKL--GRISRLAGEVFGSSWTFASLDK-AS--- 232 (253)
T ss_pred HHHhCCCEEEEEecC--CCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC--chHHHcchhhhCCcceecCCCC-CC---
Confidence 999999988886542 3567777777665432 23334432221222 2234566667787776666553 22
Q ss_pred CCCCCCCccHHHHHHHHHhCC
Q 015894 334 AKGASGNVATEDVVYMLNGLG 354 (398)
Q Consensus 334 a~graGNa~lE~vv~~L~~~G 354 (398)
+.|+.+++++...++.++
T Consensus 233 ---APGQ~~~~el~~i~~~l~ 250 (253)
T PRK02412 233 ---APGQISVEDLRRILEILH 250 (253)
T ss_pred ---CCCCCCHHHHHHHHHHhc
Confidence 567999999998888764
No 305
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=91.86 E-value=15 Score=36.78 Aligned_cols=182 Identities=13% Similarity=0.051 Sum_probs=108.5
Q ss_pred hccCCCCccEEEeCCCcccCCC------------CCCCCCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCC---CCH
Q 015894 90 LLGRVPGFVKIVEVGPRDGLQN------------EKNIVPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQL---ADA 153 (398)
Q Consensus 90 ~~~~~p~~I~i~D~TLRDG~Q~------------~~~~~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~---~D~ 153 (398)
+.++.|..+.+. +|-+-..+- ....++.++..++++.|.+. |+..|-++..- |-+ .+.
T Consensus 82 l~hkyp~rvll~-vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGD-----Pl~~~~~~L 155 (321)
T TIGR03822 82 IVHRYPDRVLLK-PVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGD-----PLVLSPRRL 155 (321)
T ss_pred cccCCCCEEEEE-ecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCC-----cccCCHHHH
Confidence 557788766654 333222211 11245777878888888754 88877775321 111 134
Q ss_pred HHHHHHHHhccCCcEEEE-eC---------CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894 154 KDVMAAIQNVEGARFPVL-TP---------NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR 223 (398)
Q Consensus 154 ~~v~~~i~~~~~~~l~~l-~~---------n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak 223 (398)
.++++.++..+..+...+ ++ +.+-++...++|.. +.|.+..+. ..+..+.+.++++.++
T Consensus 156 ~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h----------~~el~~~~~~ai~~L~ 224 (321)
T TIGR03822 156 GDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANH----------ARELTAEARAACARLI 224 (321)
T ss_pred HHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCC----------hhhcCHHHHHHHHHHH
Confidence 456666665554422222 11 12335666678843 455444332 1233466778889999
Q ss_pred hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEccCcCc-----CCHHHHHHHHHHHHhhCCC
Q 015894 224 ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISLGDTIGV-----GTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 224 ~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~ 292 (398)
+.|+.+.......-| --.+.+.+.++.+.+.++|+. .+...|.++. ..+.+..+++..+++.+++
T Consensus 225 ~~Gi~v~~q~vLl~g----vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 225 DAGIPMVSQSVLLRG----VNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG 296 (321)
T ss_pred HcCCEEEEEeeEeCC----CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 999987532221111 124678899999999999986 4667777743 4467889999999988875
No 306
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.86 E-value=4.6 Score=42.39 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec-----CCCCCcccCCCCHHHHHHHHHhc-cCCc--EEEEeC---CHhhHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATS-----FVSPKWVPQLADAKDVMAAIQNV-EGAR--FPVLTP---NLKGFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-----~~~~~~~p~~~D~~~v~~~i~~~-~~~~--l~~l~~---n~~~ie~a~~ 183 (398)
..+.++.++=++.|.+.|+..|.+.. +..+.. ..+..++++.+... ++.+ +.+..+ +.+-++...+
T Consensus 177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~---~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~ 253 (445)
T PRK14340 177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA---GADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAA 253 (445)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC---CchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHh
Confidence 47888888888999999999887742 111111 12345566555432 3333 333333 2334555556
Q ss_pred c--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 184 A--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 184 ~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
. |...+++-+ +.||.-++ .+|+. ...+.+.++++.+++. |+.+...++ +|.|.+ +.+.+.+.++.+.
T Consensus 254 ~~~g~~~l~iglQSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgE---T~edf~~tl~~~~ 325 (445)
T PRK14340 254 RPNICNHIHLPVQSGSSRMLR-RMNRG--HTIEEYLEKIALIRSAIPGVTLSTDLI--AGFCGE---TEEDHRATLSLME 325 (445)
T ss_pred CCCCCCeEEECCCcCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEeccEE--EECCCC---CHHHHHHHHHHHH
Confidence 4 688888854 44555444 34442 2345666788888888 998877666 677866 5677777777778
Q ss_pred hCCCCEEE
Q 015894 259 DMGCSEIS 266 (398)
Q Consensus 259 ~~Gad~I~ 266 (398)
+.+.+.+.
T Consensus 326 ~~~~~~~~ 333 (445)
T PRK14340 326 EVRFDSAF 333 (445)
T ss_pred hcCCCEEe
Confidence 88876653
No 307
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.84 E-value=6.5 Score=41.09 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC-CCC--CcccCCCCHHHHHHHHHhcc--CCcEEEEeC---CHhhHHHHHHc--
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF-VSP--KWVPQLADAKDVMAAIQNVE--GARFPVLTP---NLKGFEAAVAA-- 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~~~--~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~---n~~~ie~a~~~-- 184 (398)
..+.++.++-++.|.+.|++.|-+... ... .-.|...+..++++.+.... .+++...-+ +.+-++...+.
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~ 245 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPA 245 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCc
Confidence 468888888889999999988876421 000 00011224566777666442 233333323 23445666664
Q ss_pred CCCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 185 GAKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 185 Gv~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
|...+++- =+.||.-++ .+++. ...+.+.+.++.+++.|..+.....+.+|.|.+ +.+.+.+.++.+.++|.+
T Consensus 246 g~~~l~igvQSgs~~vLk-~m~R~--~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ed~~~tl~~i~~l~~~ 319 (440)
T PRK14334 246 VCEYIHLPVQSGSDRVLR-RMARE--YRREKYLERIAEIREALPDVVLSTDIIVGFPGE---TEEDFQETLSLYDEVGYD 319 (440)
T ss_pred CCCeEEeccccCCHHHHH-HhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CHHHHHHHHHHHHhcCCC
Confidence 47888884 344444333 33332 123445567788888876654444455787865 567788888888888887
Q ss_pred EEE
Q 015894 264 EIS 266 (398)
Q Consensus 264 ~I~ 266 (398)
.+.
T Consensus 320 ~i~ 322 (440)
T PRK14334 320 SAY 322 (440)
T ss_pred Eee
Confidence 653
No 308
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=91.84 E-value=15 Score=36.81 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=104.8
Q ss_pred hccCCCCccEEEeCCCcccCCCC----------CCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCCcccCCCC--HHHH
Q 015894 90 LLGRVPGFVKIVEVGPRDGLQNE----------KNIVPAVVKVELIKLLVS-SGLAVVEATSFVSPKWVPQLAD--AKDV 156 (398)
Q Consensus 90 ~~~~~p~~I~i~D~TLRDG~Q~~----------~~~~~~~~k~~ia~~L~~-aGv~~IEvG~~~~~~~~p~~~D--~~~v 156 (398)
+.+..+.++.+. +|-+-...-. ....+.++-.+++..+.+ .|+..|-++.. .|- . ..| .+++
T Consensus 90 l~hkY~~r~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL-~--~~d~~L~~l 164 (321)
T TIGR03821 90 LLHKYHGRVLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGG-DPL-M--AKDHRLDWL 164 (321)
T ss_pred eeeecCCEEEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCc-ccc-c--CCchHHHHH
Confidence 335566665443 5444333222 124566777777777764 48887766542 221 0 123 4455
Q ss_pred HHHHHhccCC---cE----EEEeCCH---hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 015894 157 MAAIQNVEGA---RF----PVLTPNL---KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS 226 (398)
Q Consensus 157 ~~~i~~~~~~---~l----~~l~~n~---~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G 226 (398)
++.++.++.+ ++ .++.+++ +-++...+.|...+.+ ++.+-. .|.-+..+++++.+++.|
T Consensus 165 l~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~G 233 (321)
T TIGR03821 165 LNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAG 233 (321)
T ss_pred HHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcC
Confidence 5555544432 22 2343442 2345556678766532 222211 122244667889999999
Q ss_pred CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EEEccCcCc-----CCHHHHHHHHHHHHhhCCC
Q 015894 227 IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE--ISLGDTIGV-----GTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 227 ~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~--I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~ 292 (398)
+.+...-. .- ..-..+.+.+.++++.+.++|+.. +...|-+|. ..+++..++++.+++..++
T Consensus 234 i~v~~qtv--ll--kgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 234 ITLLNQSV--LL--RGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG 302 (321)
T ss_pred CEEEecce--ee--CCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence 98752222 10 011136789999999999999875 455666664 3578899999999998865
No 309
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=91.82 E-value=7.1 Score=39.87 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=84.7
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEeee--ecCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP-VRGYLSCV--VGCPVEGM 244 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~-v~~~l~~~--fg~~~~~r 244 (398)
++|.++|.|.|-|... +|+. ++...+|-|.|+=...+.++++.+|+. |-. +.+-++.. +.. ..+-
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~~~G 244 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-VDNG 244 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-CCCC
Confidence 4667899999987432 2222 233345667888788888888888764 332 33223311 000 1112
Q ss_pred CCHHH-HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894 245 VPPSK-VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD 322 (398)
Q Consensus 245 ~~~~~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD 322 (398)
.++++ .+++++.+.+.|+|.|.+....-...+.-...+.+.+++.++. +|..-.-+| ...+..+++.| +|.
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D~-- 317 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLIDA-- 317 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCCE--
Confidence 46667 7999999999999998886421000111123456778887764 455544444 56788889988 565
Q ss_pred eccccCCC
Q 015894 323 SSVSGLGG 330 (398)
Q Consensus 323 ~Sv~GlGe 330 (398)
.|||+
T Consensus 318 ---V~~gR 322 (362)
T PRK10605 318 ---VAFGR 322 (362)
T ss_pred ---EEECH
Confidence 46665
No 310
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=91.77 E-value=3.9 Score=41.70 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=68.1
Q ss_pred HHHHHHHHhccCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-
Q 015894 154 KDVMAAIQNVEGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP- 228 (398)
Q Consensus 154 ~~v~~~i~~~~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~- 228 (398)
+++++.++..++..++.-+ | +.+.++...++|+.+|.+-+..-+-.....+|+. ...+.+.++++.+++.|+.
T Consensus 78 ~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~--~~~~~~~~ai~~~~~~g~~~ 155 (370)
T PRK06294 78 QDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRT--HSSSKAIDAVQECSEHGFSN 155 (370)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCe
Confidence 3444445433455555544 2 2456788889999988885443332333344432 1233445677889999996
Q ss_pred EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 229 VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 229 v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
|.+.++ +|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 156 v~~Dli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 156 LSIDLI--YGLPTQ---SLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred EEEEee--cCCCCC---CHHHHHHHHHHHHccCCCeEEE
Confidence 666665 677754 6788888889999999987765
No 311
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=91.74 E-value=17 Score=37.18 Aligned_cols=198 Identities=15% Similarity=0.088 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---------ccCCC---CHHHHHHHHHhc---cCCcEEEEe---CCH-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---------VPQLA---DAKDVMAAIQNV---EGARFPVLT---PNL- 175 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---------~p~~~---D~~~v~~~i~~~---~~~~l~~l~---~n~- 175 (398)
.+..+....++++-.+.+-+.|=-.++..-++ +|+.+ ....+...++.. -.+.+.... .+.
T Consensus 34 v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~ 113 (357)
T TIGR01520 34 CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL 113 (357)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 47788888899999999999876655432221 12111 112233333321 133333332 244
Q ss_pred -hhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-
Q 015894 176 -KGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE- 242 (398)
Q Consensus 176 -~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~- 242 (398)
+.++.++++| ...|.+= .| ..+.+++++.-++++++|+..|+.|++.|-..-|.++.
T Consensus 114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiD--gS--------~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~ 183 (357)
T TIGR01520 114 LPWVDGLLEAGEKYFSAHGKPLFSSHMID--LS--------EEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGV 183 (357)
T ss_pred hHHHHHHHHhhhhhhhhcCCCCCceEEee--CC--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCc
Confidence 4478888876 5656552 22 23578999999999999999999999888776454442
Q ss_pred ---C------CCCHHHHHHHHHHHH-hCCCCE--EEEccCcCcCC---HHHHHHHHHHH----HhhC--C---CCeEEEE
Q 015894 243 ---G------MVPPSKVAYVSKQLY-DMGCSE--ISLGDTIGVGT---PGTVIPMLEAV----LDAV--P---VDKLAVH 298 (398)
Q Consensus 243 ---~------r~~~~~l~~~a~~l~-~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l----~~~~--p---~~~l~~H 298 (398)
. -++|+...+++++.. .-|+|. +.+.-.=|.-. |.=-.++++.+ ++.. | .+||.+|
T Consensus 184 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLH 263 (357)
T TIGR01520 184 DNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFH 263 (357)
T ss_pred ccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEe
Confidence 1 378888888876552 237775 45554555442 32333445555 3433 3 2237766
Q ss_pred eCCccchHHHHHHHHHHhCCCEEeec
Q 015894 299 FHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 299 ~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
+ .-|..--....|++.|+.-|+..
T Consensus 264 G--gSGi~~e~i~kai~~GI~KINi~ 287 (357)
T TIGR01520 264 G--GSGSTKQEIKEALSYGVVKMNID 287 (357)
T ss_pred C--CCCCCHHHHHHHHHCCCeEEEeC
Confidence 6 56677788999999999877654
No 312
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.74 E-value=14 Score=36.27 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCEEEEecCCC-CCc-c--c-----------C--C--CCHHHHHHHHHh-cc--CCcEEE-E-eCCHhhH
Q 015894 123 ELIKLLVSSGLAVVEATSFVS-PKW-V--P-----------Q--L--ADAKDVMAAIQN-VE--GARFPV-L-TPNLKGF 178 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~-~~~-~--p-----------~--~--~D~~~v~~~i~~-~~--~~~l~~-l-~~n~~~i 178 (398)
+.++.+.+.|+..|++++... |.. . | . + ...+.+++.++. .. +..+.+ + ..+.+++
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~ 106 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVAGSTEEEY 106 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEeccCCHHHH
Confidence 677888999999999986431 100 0 1 0 1 123444544432 22 222222 2 2355554
Q ss_pred H----HHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 179 E----AAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 179 e----~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
. ++.+.| +|.|-+-++. +. .... +....+..+.+.++++.+|+. .+.|.+-+. .+.+...+
T Consensus 107 ~~~a~~~~~aG~~D~iElN~~c-P~-~~~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~----------~~~~~~~~ 173 (301)
T PRK07259 107 AEVAEKLSKAPNVDAIELNISC-PN-VKHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT----------PNVTDIVE 173 (301)
T ss_pred HHHHHHHhccCCcCEEEEECCC-CC-CCCC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC----------CCchhHHH
Confidence 3 445678 9988774431 11 1110 111111234555666666665 566554333 13356788
Q ss_pred HHHHHHhCCCCEEEEccCc
Q 015894 253 VSKQLYDMGCSEISLGDTI 271 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~ 271 (398)
+++.+.++|+|.|.+-+|+
T Consensus 174 ~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 174 IAKAAEEAGADGLSLINTL 192 (301)
T ss_pred HHHHHHHcCCCEEEEEccc
Confidence 8999999999998876553
No 313
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=91.72 E-value=17 Score=37.98 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=72.2
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
++++|.+.|++.|.+..+.. .-...++++++++.+.+..+.+....|...|..+.|....--.+++.+.++++.
T Consensus 223 eL~rA~~LGa~~VV~HPGs~------~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~ 296 (413)
T PTZ00372 223 DLQRCEQLGIKLYNFHPGST------VGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL 296 (413)
T ss_pred HHHHHHHcCCCEEEECCCcC------CCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 46788889999887754321 112345778888888887776554445544543322111111467888887766
Q ss_pred HHhCCCCEEEEc-cCc-----Cc--CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccc
Q 015894 257 LYDMGCSEISLG-DTI-----GV--GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYG 304 (398)
Q Consensus 257 l~~~Gad~I~L~-DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~G 304 (398)
+.+ .+++.+| ||. |+ -+|..+.+++..+.+.+. +---++|+||..|
T Consensus 297 v~~--~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~ 351 (413)
T PTZ00372 297 VED--KSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKS 351 (413)
T ss_pred cCC--cCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCC
Confidence 532 2333322 553 32 367788888888877664 3346789999875
No 314
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.67 E-value=8.5 Score=40.43 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC---CcEEEEeCC---HhhHHHHHHcC--C
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG---ARFPVLTPN---LKGFEAAVAAG--A 186 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~n---~~~ie~a~~~G--v 186 (398)
..+.+..++-++.|.+.|++.|-+..-.-..+.....+..+++..+...++ +++..+-+. .+-++...++| .
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~ 261 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFC 261 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCCCcc
Confidence 468899999999999999988876421100000011223344443433332 233222222 22355666777 6
Q ss_pred CEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 187 KEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 187 ~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
..+++-+ +.||.-++ .+|+. -..+.+.++++.+++. ++.+..+++ +|.|.+ +.+.+.+.++.+.+.+.+
T Consensus 262 ~~l~lgvQSgsd~vLk-~m~R~--~t~~~~~~~i~~lr~~~p~i~i~td~I--vGfPgE---T~edf~~tl~~v~~l~~~ 333 (449)
T PRK14332 262 PNIHLPLQAGNTRVLE-EMKRS--YSKEEFLDVVKEIRNIVPDVGITTDII--VGFPNE---TEEEFEDTLAVVREVQFD 333 (449)
T ss_pred ceEEECCCcCCHHHHH-hhCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--eeCCCC---CHHHHHHHHHHHHhCCCC
Confidence 7788743 44444433 34442 1234455667777776 566665555 677876 567777788888888887
Q ss_pred EE
Q 015894 264 EI 265 (398)
Q Consensus 264 ~I 265 (398)
.+
T Consensus 334 ~~ 335 (449)
T PRK14332 334 MA 335 (449)
T ss_pred EE
Confidence 65
No 315
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=91.63 E-value=2.2 Score=40.96 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=62.7
Q ss_pred HHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894 155 DVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG 231 (398)
Q Consensus 155 ~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~ 231 (398)
.+...++++ .+++++.++ |+.++++.|.+.|++.|-++... +....-....++.++++..++++|+++|+.|.+
T Consensus 111 ~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA 187 (234)
T cd00003 111 KLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVNA 187 (234)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec
Confidence 334444433 356666666 67889999999999999987652 222111112355799999999999999999862
Q ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
..-.+.+.+..+++ --+...++|
T Consensus 188 ----------GHgLny~Nv~~i~~---ip~i~ElnI 210 (234)
T cd00003 188 ----------GHGLNYENVKPIAK---IPGIAELNI 210 (234)
T ss_pred ----------CCCCCHHHHHHHHh---CCCCeEEcc
Confidence 12345566665553 234556654
No 316
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=91.62 E-value=4 Score=40.06 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+++.-...+-+++.++.. +. +...+.++.|++.|..... ...|...+.+.+.+.+..+.+
T Consensus 60 ~~~~~~~~~~~~~viagv~~~--------~~----~~ai~~a~~a~~~Gad~v~-----~~~P~y~~~~~~~i~~~~~~v 122 (288)
T cd00954 60 AEIVAEAAKGKVTLIAHVGSL--------NL----KESQELAKHAEELGYDAIS-----AITPFYYKFSFEEIKDYYREI 122 (288)
T ss_pred HHHHHHHhCCCCeEEeccCCC--------CH----HHHHHHHHHHHHcCCCEEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 455555433456666665432 22 3344566788889987542 114555556677777777766
Q ss_pred HhC--CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE-eCCcc
Q 015894 258 YDM--GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH-FHDTY 303 (398)
Q Consensus 258 ~~~--Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~ 303 (398)
.+. +... ..++...|.-.+.+ ++..|.+ .|++ +++. ...|.
T Consensus 123 ~~a~~~lpi~iYn~P~~tg~~l~~~---~~~~L~~-~pni-vgiK~s~~d~ 168 (288)
T cd00954 123 IAAAASLPMIIYHIPALTGVNLTLE---QFLELFE-IPNV-IGVKFTATDL 168 (288)
T ss_pred HHhcCCCCEEEEeCccccCCCCCHH---HHHHHhc-CCCE-EEEEeCCCCH
Confidence 553 3443 34667777655543 3344443 6764 6664 44444
No 317
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.52 E-value=6.9 Score=34.44 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHH
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFS 200 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~ 200 (398)
|.-++..|.+.|++.+..|..++| +++ ++.|.+.+++.|.+..-..
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~---------e~~---------------------v~aa~~~~adiVglS~l~~---- 63 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQ---------EEF---------------------IKAAIETKADAILVSSLYG---- 63 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecccc----
Confidence 344677889999999999987653 333 3456677788887743221
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHH
Q 015894 201 KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVI 280 (398)
Q Consensus 201 ~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~ 280 (398)
..+..++++++..++.|+.-.. +. +|... -.+++...+..+++.++|++.+.=++| .|+++.
T Consensus 64 ---------~~~~~~~~~~~~l~~~gl~~~~-vi--vGG~~--vi~~~d~~~~~~~l~~~Gv~~vF~pgt----~~~~iv 125 (134)
T TIGR01501 64 ---------HGEIDCKGLRQKCDEAGLEGIL-LY--VGGNL--VVGKQDFPDVEKRFKEMGFDRVFAPGT----PPEVVI 125 (134)
T ss_pred ---------cCHHHHHHHHHHHHHCCCCCCE-EE--ecCCc--CcChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence 1234566778888888874221 21 22210 134455555566778899998887776 556655
Q ss_pred HHHHH
Q 015894 281 PMLEA 285 (398)
Q Consensus 281 ~lv~~ 285 (398)
+.++.
T Consensus 126 ~~l~~ 130 (134)
T TIGR01501 126 ADLKK 130 (134)
T ss_pred HHHHH
Confidence 55543
No 318
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=91.52 E-value=3.2 Score=41.92 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894 66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ 110 (398)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q 110 (398)
++|..+++|+++ +...++..+... .|..+++|..||..
T Consensus 13 G~q~~~~~f~~~----~~~~ia~~Ld~a---GV~~IEvg~g~gl~ 50 (333)
T TIGR03217 13 GMHAIRHQFTIE----QVRAIAAALDEA---GVDAIEVTHGDGLG 50 (333)
T ss_pred CCcCCCCcCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCC
Confidence 677889999999 888899998865 68899999888853
No 319
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=91.50 E-value=4.6 Score=42.93 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
.+-++...++|+.+|.+-+-..+-..-..+|+. ...+.+.++++.+++.|+ .+...++ +|.|.. +.+.+.+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~t 341 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKHT 341 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHHH
Confidence 456788889999988885544332222344442 234455677889999999 5665665 677765 57888888
Q ss_pred HHHHHhCCCCEEEEcc--------------CcCcCCHHHHHHHHHHHHhh
Q 015894 254 SKQLYDMGCSEISLGD--------------TIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 254 a~~l~~~Gad~I~L~D--------------T~G~~~P~~v~~lv~~l~~~ 289 (398)
++.+.+++++.+.+-- ......+....+++....+.
T Consensus 342 l~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~ 391 (488)
T PRK08207 342 LEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW 391 (488)
T ss_pred HHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence 8999999998776542 22334455555565555544
No 320
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.48 E-value=3 Score=41.24 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=83.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.++-|-+ +. -++.+.+..+++.+.+.+... |.+.-. ...+....+..++..+.++.+
T Consensus 6 ~~~~l~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~- 74 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPA-FN---------IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN- 74 (284)
T ss_pred HHHHHHHHHHcCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 56778889999997742 22 146789999999999999875 444332 223344567777888877775
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG 354 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G 354 (398)
+|+.+| =|.|.-...+..|+++|.+ ++|+|-..+-+ |. -|-+++.+.+..|
T Consensus 75 VPValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~~g 128 (284)
T PRK12737 75 IPLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE---------NIAIVKEVVEFCHRYD 128 (284)
T ss_pred CCEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence 466655 4777778999999999998 67999887766 55 4566666666443
No 321
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.47 E-value=9.4 Score=37.81 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G 327 (398)
=++.+.++|+|.| |-+-..+| ..++++.+++.| ..++-.-+-| +..++.++..|+++|-++..|
T Consensus 81 Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 81 EAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence 3778899999999 88889999 688899999888 5555554433 567788999999999999773
No 322
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=91.42 E-value=1.6 Score=42.45 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=55.2
Q ss_pred CCC-CCHHHHHHHHHHHHhCCCCEEEEcc-CcC----cCCHH-H---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894 242 EGM-VPPSKVAYVSKQLYDMGCSEISLGD-TIG----VGTPG-T---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL 311 (398)
Q Consensus 242 ~~r-~~~~~l~~~a~~l~~~Gad~I~L~D-T~G----~~~P~-~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal 311 (398)
.++ .+++...+.+++..+.||+.|-+.- +.. ...|+ + +..+|+.+++.+ +.+|.+|.++. .-..
T Consensus 16 g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~-----~vi~ 89 (257)
T TIGR01496 16 GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRA-----EVAR 89 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCH-----HHHH
Confidence 444 4789999999999999999999941 111 11232 3 667777777655 46899999986 4456
Q ss_pred HHHHhCCCEEeec
Q 015894 312 ASLQMGISTVDSS 324 (398)
Q Consensus 312 aAl~aGa~~VD~S 324 (398)
+|+++|+++|+-.
T Consensus 90 ~al~~G~~iINsi 102 (257)
T TIGR01496 90 AALEAGADIINDV 102 (257)
T ss_pred HHHHcCCCEEEEC
Confidence 7788899998754
No 323
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=91.42 E-value=18 Score=36.73 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=96.7
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-C--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-L--SIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
++.+.+-|+..+-+..+....+...+-+.+.++.++.+.+.++.+++ . |+.++.-++.. -..+++...+.+
T Consensus 76 ~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~------R~~~~e~~~e~~ 149 (345)
T cd01321 76 LEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATL------RNFNDSEIKESM 149 (345)
T ss_pred HHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEec------CCCCHHHHHHHH
Confidence 45667788877666554322233324578999999999888777643 3 45555333311 123566655555
Q ss_pred HHHHhC---CCCEEEEccCcCc---C-CHHHHHHHHHHHHhhCCCCeEEEEeCCccc--hH-HHHHHHHHHhCCCEEeec
Q 015894 255 KQLYDM---GCSEISLGDTIGV---G-TPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--QA-LSNILASLQMGISTVDSS 324 (398)
Q Consensus 255 ~~l~~~---Gad~I~L~DT~G~---~-~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--lA-~ANalaAl~aGa~~VD~S 324 (398)
+.+..+ ..+.|.=-|-.|- . .|....+.+...++.-+++++.+|+=...+ .. ..|...|+..|+++|+=.
T Consensus 150 ~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG 229 (345)
T cd01321 150 EQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHG 229 (345)
T ss_pred HHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccc
Confidence 555543 2222333344442 2 367778888888876555789999876653 22 347788888999998655
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894 325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi 355 (398)
+.-... ++++..|++.+|
T Consensus 230 ~~~~~d-------------p~ll~~l~~~~I 247 (345)
T cd01321 230 FALPKH-------------PLLMDLVKKKNI 247 (345)
T ss_pred cccCcC-------------HHHHHHHHHcCC
Confidence 553322 567777776655
No 324
>PRK08508 biotin synthase; Provisional
Probab=91.39 E-value=0.85 Score=44.74 Aligned_cols=117 Identities=15% Similarity=0.042 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHH
Q 015894 206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEA 285 (398)
Q Consensus 206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~ 285 (398)
.+.++.++. ++.+++.|..- +.+.. .| ......+.+++.++++.+.+.+.+ +.++-+.|.++++.+..+-++
T Consensus 40 ~s~eeI~~~----a~~a~~~g~~~-~~lv~-sg-~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQE----AKMAKANGALG-FCLVT-SG-RGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred CCHHHHHHH----HHHHHHCCCCE-EEEEe-cc-CCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 466665554 45556667632 22211 11 111123567888888888766543 234446788887766665444
Q ss_pred HHhhCC-CC----eEE--EEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 286 VLDAVP-VD----KLA--VHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 286 l~~~~p-~~----~l~--~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
=...++ ++ .+- ++.-.++.--+.....|-++|...-.+-+.|+||
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE 163 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE 163 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC
Confidence 111222 00 010 1111233344555556778888777778888888
No 325
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.38 E-value=7.9 Score=37.73 Aligned_cols=152 Identities=19% Similarity=0.202 Sum_probs=86.0
Q ss_pred HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894 178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM 244 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r 244 (398)
++...+.|+|.+-+-++.||.... .+-|.+.++.++ .++..|+. ..++ .+| ...+|.. .
T Consensus 32 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~----~~~~~r~~~~~~p~--vlm-~Y~N~i~-~ 103 (258)
T PRK13111 32 IKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE----LVREIREKDPTIPI--VLM-TYYNPIF-Q 103 (258)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCE--EEE-ecccHHh-h
Confidence 445667899999999998886211 111334444444 34444433 3332 133 2212221 2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
+.. .++++.+.++|++.+-++|- .|++..+++..+++. .-..|-+ +=.+.-..-...+++..-|.=++ ++
T Consensus 104 ~G~---e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~l-vap~t~~eri~~i~~~s~gfIY~-vs 173 (258)
T PRK13111 104 YGV---ERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFL-VAPTTTDERLKKIASHASGFVYY-VS 173 (258)
T ss_pred cCH---HHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEE-eCCCCCHHHHHHHHHhCCCcEEE-Ee
Confidence 223 34677788999999999993 678888999888774 3223433 33333334455566665554333 47
Q ss_pred cccCCCCCCCCCCCCC-ccHHHHHHHHHh
Q 015894 325 VSGLGGCPYAKGASGN-VATEDVVYMLNG 352 (398)
Q Consensus 325 v~GlGecp~a~graGN-a~lE~vv~~L~~ 352 (398)
+.|..+ .+++. ..+++.+..+++
T Consensus 174 ~~GvTG-----~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 174 RAGVTG-----ARSADAADLAELVARLKA 197 (258)
T ss_pred CCCCCC-----cccCCCccHHHHHHHHHh
Confidence 777544 02232 467778888875
No 326
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.31 E-value=1.9 Score=42.95 Aligned_cols=82 Identities=17% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEeC-CccchHHHHHHHHHHhC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHFH-DTYGQALSNILASLQMG 317 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~H-nd~GlA~ANalaAl~aG 317 (398)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++..++... .+++-+|.- ++.--++..+..|-++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999 4677888888888887764 467778774 78899999999999999
Q ss_pred CCEEeec
Q 015894 318 ISTVDSS 324 (398)
Q Consensus 318 a~~VD~S 324 (398)
|+.|=+.
T Consensus 104 ad~vlv~ 110 (309)
T cd00952 104 ADGTMLG 110 (309)
T ss_pred CCEEEEC
Confidence 9977655
No 327
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.28 E-value=8.9 Score=40.29 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC--CC-C--CcccCCCCHHHHHHHHH---h-ccCCcEEEE---eCC---HhhHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF--VS-P--KWVPQLADAKDVMAAIQ---N-VEGARFPVL---TPN---LKGFE 179 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~--~~-~--~~~p~~~D~~~v~~~i~---~-~~~~~l~~l---~~n---~~~ie 179 (398)
..+.+..++-++.|.+.|++.|.+... .. . ..........+++..+. . ..+.....+ -+. .+-++
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~ 259 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIA 259 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHH
Confidence 467888888889999999988866421 11 0 00001113445555542 1 223322222 222 23355
Q ss_pred HHHH--cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 180 AAVA--AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 180 ~a~~--~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
...+ .|...+++-+ +.|+.-++ .+|+. ...+.+.++++.+++. |+.+.+.++ +|.|.+ +.+.+.+.+
T Consensus 260 ~m~~~~~gc~~l~iglQSgsd~vLk-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~I--vGfPgE---T~edf~~Tl 331 (455)
T PRK14335 260 TIAQESRLCRLVHLPVQHGSNGVLK-RMNRS--YTREHYLSLVGKLKASIPNVALSTDIL--IGFPGE---TEEDFEQTL 331 (455)
T ss_pred HHHhCCCCCCeEEEccCcCCHHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHH
Confidence 5555 4789999977 55665554 35542 2345666778888888 887776666 677765 467777777
Q ss_pred HHHHhCCCCEEE
Q 015894 255 KQLYDMGCSEIS 266 (398)
Q Consensus 255 ~~l~~~Gad~I~ 266 (398)
+.+.+.+.+.+.
T Consensus 332 ~~i~~l~~~~~~ 343 (455)
T PRK14335 332 DLMREVEFDSAF 343 (455)
T ss_pred HHHHhcCCCeEE
Confidence 778888877543
No 328
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=91.18 E-value=4 Score=38.13 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=85.3
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE------------eCCHhhHHHHHHcCCCEEE
Q 015894 123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL------------TPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l------------~~n~~~ie~a~~~Gv~~v~ 190 (398)
+++++-...|-..|-+.+ .++ ++.+++..+..+.++ +|+.++++..+++|++.|.
T Consensus 3 ~mA~Aa~~gGA~giR~~~------------~~d-I~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIA 69 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG------------VED-IRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIA 69 (192)
T ss_dssp HHHHHHHHCT-SEEEEES------------HHH-HHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHCCceEEEcCC------------HHH-HHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEE
Confidence 566666777777776653 222 344554334333333 3567889999999999999
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS---- 266 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~---- 266 (398)
+=... ..+. +.+.++++..|+.+..+.+.+ .+.|+ +..+.++|+|.|.
T Consensus 70 lDaT~----------R~Rp---~~l~~li~~i~~~~~l~MADi-----------st~ee----~~~A~~~G~D~I~TTLs 121 (192)
T PF04131_consen 70 LDATD----------RPRP---ETLEELIREIKEKYQLVMADI-----------STLEE----AINAAELGFDIIGTTLS 121 (192)
T ss_dssp EE-SS----------SS-S---S-HHHHHHHHHHCTSEEEEE------------SSHHH----HHHHHHTT-SEEE-TTT
T ss_pred EecCC----------CCCC---cCHHHHHHHHHHhCcEEeeec-----------CCHHH----HHHHHHcCCCEEEcccc
Confidence 84331 2223 445577888888884333222 23333 5567789999984
Q ss_pred --EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 267 --LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 267 --L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
-.+|.| -.| =.++++.+.+. +.++-.-+|-+. ...+..|+++||..|
T Consensus 122 GYT~~t~~-~~p--D~~lv~~l~~~--~~pvIaEGri~t---pe~a~~al~~GA~aV 170 (192)
T PF04131_consen 122 GYTPYTKG-DGP--DFELVRELVQA--DVPVIAEGRIHT---PEQAAKALELGAHAV 170 (192)
T ss_dssp TSSTTSTT-SSH--HHHHHHHHHHT--TSEEEEESS--S---HHHHHHHHHTT-SEE
T ss_pred cCCCCCCC-CCC--CHHHHHHHHhC--CCcEeecCCCCC---HHHHHHHHhcCCeEE
Confidence 466666 333 34667777764 346655444332 466788999999865
No 329
>PRK07360 FO synthase subunit 2; Reviewed
Probab=91.17 E-value=2.1 Score=43.70 Aligned_cols=77 Identities=14% Similarity=0.286 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEe---------CCccchHHHHHHH
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHF---------HDTYGQALSNILA 312 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~---------Hnd~GlA~ANala 312 (398)
+.+++.+.+.++++.++|+.+|.|..-.+... ++.+.++++.+++.+|. +.+|. -.+.|+..-..+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 46899999999999999999999993212221 45688999999988875 33442 3367888777776
Q ss_pred HH-HhCCCEEe
Q 015894 313 SL-QMGISTVD 322 (398)
Q Consensus 313 Al-~aGa~~VD 322 (398)
.+ +||++.+.
T Consensus 168 ~LkeAGld~~~ 178 (371)
T PRK07360 168 ALKDAGLDSMP 178 (371)
T ss_pred HHHHcCCCcCC
Confidence 66 59999885
No 330
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=91.08 E-value=20 Score=37.10 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCCCC---HHHHHHHHHh-cc--CCcEEEEeC----CHhhHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQLAD---AKDVMAAIQN-VE--GARFPVLTP----NLKGFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~-~~--~~~l~~l~~----n~~~ie~a~~ 183 (398)
.++.+.-.++++.+.+. |++.+.+.+.... |-+.. ..++.+.+++ .. ++.+...+- +.+-++...+
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGE---PlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~ 123 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGGE---TLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRE 123 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEccc---cCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHH
Confidence 47888888888877654 7788888654321 32332 2223344332 12 233333222 2344566677
Q ss_pred cCCCEEEEeccCc-hHHHhhhcCCC--HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 184 AGAKEVAIFASAS-ESFSKSNINCT--IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 184 ~Gv~~v~i~~~~S-d~~~~~~~~~s--~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
.++ .|.|.+... +.|- .++.+ -...++++.+.++.++++|+.+. +.+++ ++.+.+++.++++.+.+.
T Consensus 124 ~~~-~v~ISlDG~~~~hD--~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv-----~~~n~~~~~e~~~~~~~l 193 (412)
T PRK13745 124 NNF-LVGVSIDGPQEFHD--EYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV-----NDFNADYPLDFYHFFKEL 193 (412)
T ss_pred cCe-EEEEEecCCHHHhh--hhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE-----cCCccccHHHHHHHHHHc
Confidence 886 777754433 3332 12221 12357777777888889998765 33333 234456677788888899
Q ss_pred CCCEEEE
Q 015894 261 GCSEISL 267 (398)
Q Consensus 261 Gad~I~L 267 (398)
|++.+.+
T Consensus 194 g~~~~~~ 200 (412)
T PRK13745 194 DCHYIQF 200 (412)
T ss_pred CCCeEEE
Confidence 9987755
No 331
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=91.04 E-value=0.86 Score=43.88 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=73.3
Q ss_pred HHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894 155 DVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG 231 (398)
Q Consensus 155 ~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~ 231 (398)
.+...++++ .+++++.++ |+.++++.|.+.|++.|-++.. .|... ++...++.++++..+.++|+++|+.|.+
T Consensus 114 ~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG---~yA~a-~~~~~~~el~~~~~aa~~a~~lGL~VnA 189 (239)
T PRK05265 114 KLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTG---PYADA-KTEAEAAELERIAKAAKLAASLGLGVNA 189 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcC-CCcchHHHHHHHHHHHHHHHHcCCEEec
Confidence 333444433 356666666 6788999999999999998765 22222 1223355699999999999999999862
Q ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----ccCcCcCCHHHHHHHHHHHH
Q 015894 232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-----GDTIGVGTPGTVIPMLEAVL 287 (398)
Q Consensus 232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~lv~~l~ 287 (398)
..-.+.+.+..+++ --+...++| ++..=++.+..|+++.+.+.
T Consensus 190 ----------GHgLny~Nv~~i~~---ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~ 237 (239)
T PRK05265 190 ----------GHGLNYHNVKPIAA---IPGIEELNIGHAIIARALFVGLEEAVREMKRLMD 237 (239)
T ss_pred ----------CCCCCHHhHHHHhh---CCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 12245555555421 124555554 45555566666666665554
No 332
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.03 E-value=2.6 Score=44.93 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
.+.++.+.++|++.|.+ |+.- .....+.+.++.+++.+|+.+|.. -...-...+..++++||+.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~-G~s~~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQ-GNSIYQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCC-CCchHHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 67788899999999888 4432 333445788999999999877777 1223346788899999999998554
No 333
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.99 E-value=6.3 Score=41.42 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
+.-.+-+..|.++|++.|++-...... ....+.++.+++ .|+..+.+ -+-+.++.+.++++|+|.|.+-++.-
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~-----~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G 297 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHS-----IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG 297 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcH-----hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence 345677779999999999997532110 122344444553 35555443 34578899999999999998854211
Q ss_pred hH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894 197 ES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275 (398)
Q Consensus 197 d~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~ 275 (398)
-+ .-+...++... .+..+.++.+.+++.++++-+ +.+-.++.++ ++ +.++||+.+.+.-.
T Consensus 298 ~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvia---------dGGi~~~~di---~k-Ala~GA~~V~~G~~----- 358 (450)
T TIGR01302 298 SICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVIA---------DGGIRYSGDI---VK-ALAAGADAVMLGSL----- 358 (450)
T ss_pred cCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHH---HH-HHHcCCCEEEECch-----
Confidence 00 00111223222 345566777888888877531 3343445443 33 34689999987653
Q ss_pred HHHHHHHHHHHHhhCCCCeE---EEEeCCccchHHHHHHH
Q 015894 276 PGTVIPMLEAVLDAVPVDKL---AVHFHDTYGQALSNILA 312 (398)
Q Consensus 276 P~~v~~lv~~l~~~~p~~~l---~~H~Hnd~GlA~ANala 312 (398)
+..- ++.|..-+ +-+.-.-+||+...++.
T Consensus 359 -------~a~~-~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 359 -------LAGT-TESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred -------hhcC-CcCCCceEEECCEEEEEEeccchHHHHh
Confidence 2221 23454322 23445568999665543
No 334
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=90.97 E-value=2.5 Score=40.23 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=67.2
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+....++|...|.+|--- | -+.++.++.+.+.|.++|+.++ -.+-.|.+.+.++.+.+
T Consensus 141 iaml~dmG~~SiKffPM~---------G---l~~leE~~avA~aca~~g~~lE----------PTGGIdl~Nf~~I~~i~ 198 (236)
T TIGR03581 141 IAMLKDMGGSSVKFFPMG---------G---LKHLEEYAAVAKACAKHGFYLE----------PTGGIDLDNFEEIVQIA 198 (236)
T ss_pred HHHHHHcCCCeeeEeecC---------C---cccHHHHHHHHHHHHHcCCccC----------CCCCccHHhHHHHHHHH
Confidence 344567899999886321 1 1346778888999999998754 24457899999999999
Q ss_pred HhCCCCEE-------EEccCcCcCCHHHHHHHHHHHHh
Q 015894 258 YDMGCSEI-------SLGDTIGVGTPGTVIPMLEAVLD 288 (398)
Q Consensus 258 ~~~Gad~I-------~L~DT~G~~~P~~v~~lv~~l~~ 288 (398)
.++|+..| .|--..|.-.|++|++++..+++
T Consensus 199 ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~ 236 (236)
T TIGR03581 199 LDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK 236 (236)
T ss_pred HHcCCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence 99998765 34456799999999999998763
No 335
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=90.96 E-value=5.7 Score=33.78 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=79.2
Q ss_pred CCCCHHHHHHHHHHH-HhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC----CHhhHHHHHHcCC
Q 015894 114 NIVPAVVKVELIKLL-VSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLTP----NLKGFEAAVAAGA 186 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L-~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~----n~~~ie~a~~~Gv 186 (398)
..++.++.++.++.+ .+.|+..+..+..- |-.. .+....+..+.+. .+.++...+. +.+.++...+.|.
T Consensus 26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~ge-p~~~---~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~ 101 (166)
T PF04055_consen 26 REMSPEEILEEIKELKQDKGVKEIFFGGGE-PTLH---PDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGV 101 (166)
T ss_dssp EECHHHHHHHHHHHHHHHTTHEEEEEESST-GGGS---CHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHhHhcCCcEEEEeecC-CCcc---hhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCc
Confidence 468899999999999 69898888887421 2111 1233344444433 3555555442 2566888899999
Q ss_pred CEEEEeccCchHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 187 KEVAIFASASESF-SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 187 ~~v~i~~~~Sd~~-~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
+.+.+.+...+-. ....++ +....+.+.+.++.+++.|+.....++ ++.|.. +.+++.++++.
T Consensus 102 ~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~---~~~e~~~~~~~ 165 (166)
T PF04055_consen 102 DRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE---NDEEIEETIRF 165 (166)
T ss_dssp SEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT---SHHHHHHHHHH
T ss_pred cEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC---CHHHHHHHhCc
Confidence 9998855444433 344443 223445566778899999987322233 334543 45666666653
No 336
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.95 E-value=1.3 Score=40.88 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE--EeCCccchHHHHHHHHHHhCCCEE
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV--HFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~--H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
..+++...++++.+ +-|++.|-+ +.-..+|.. .+.++.+++.+|+..+.+ |.+ |.| .-.+..+.++||+.|
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence 36789999999988 788887766 222334443 577889998887544554 455 333 225677889999988
Q ss_pred eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccC
Q 015894 322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVD 360 (398)
Q Consensus 322 D~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iD 360 (398)
-+-. + +++..+++++...+++|+...++
T Consensus 81 ~vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLG----V-------ADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 5331 1 22334567777777777665544
No 337
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.90 E-value=1.9 Score=45.72 Aligned_cols=69 Identities=12% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|+.+|.+ -.+.-...+..++++||+.|++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 57788899999998765444344 5789999999999998878777 345556778899999999999644
No 338
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.86 E-value=7.9 Score=40.00 Aligned_cols=84 Identities=8% Similarity=0.079 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE--c--cC-----cC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISL--G--DT-----IG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L--~--DT-----~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala 312 (398)
.+++.+.++++.+.+.|+|.|.| . .+ .| .-.|+.++++++.+++... +||-+-.=-+..-=..-+.+
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~a 202 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARV 202 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHH
Confidence 46899999999999999997654 1 22 11 2469999999999987653 46666666555443345555
Q ss_pred HHHhCCCEE---eeccccCC
Q 015894 313 SLQMGISTV---DSSVSGLG 329 (398)
Q Consensus 313 Al~aGa~~V---D~Sv~GlG 329 (398)
|.++||+.| ++...+++
T Consensus 203 a~~~Gadgi~liNT~~~~~~ 222 (385)
T PLN02495 203 ALKSGCEGVAAINTIMSVMG 222 (385)
T ss_pred HHHhCCCEEEEecccCcccc
Confidence 778999854 55544444
No 339
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=90.83 E-value=5.6 Score=38.35 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcc-c-CC--CCHHHHHHHHHhccCCcEEEEeC-----------CH-----------h
Q 015894 123 ELIKLLVSSGLAVVEATSFVSPKWV-P-QL--ADAKDVMAAIQNVEGARFPVLTP-----------NL-----------K 176 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~~~~~-p-~~--~D~~~v~~~i~~~~~~~l~~l~~-----------n~-----------~ 176 (398)
+.++.+.++|++.||+.......+. + .+ .+.+++.+.+++ .++++.+++. +. +
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 103 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK 103 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 4566667999999999753211110 0 00 122233333332 3455543321 10 1
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
.++.|.+.|++.|.+.... ...........+...+.++++.++|+++|+.+. +... +...-.+++...++++
T Consensus 104 ~i~~a~~lG~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~~~~ll~- 175 (283)
T PRK13209 104 AIQLAQDLGIRVIQLAGYD--VYYEQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISKALGYAH- 175 (283)
T ss_pred HHHHHHHcCCCEEEECCcc--ccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHHHHHHHH-
Confidence 2467778999988763211 000000011123446677888999999998765 2211 1122235566555554
Q ss_pred HHhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc
Q 015894 257 LYDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY 303 (398)
Q Consensus 257 l~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~ 303 (398)
+.+-+.+.+ -|+.=...-. .+....++. ..+--.++|.+|..
T Consensus 176 --~v~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~ 218 (283)
T PRK13209 176 --YLNSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTK 218 (283)
T ss_pred --HhCCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCC
Confidence 445455544 3643221100 012223332 33335899999975
No 340
>PLN02591 tryptophan synthase
Probab=90.82 E-value=11 Score=36.54 Aligned_cols=152 Identities=13% Similarity=0.141 Sum_probs=83.7
Q ss_pred HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCCCC
Q 015894 178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~~r~ 245 (398)
++...+.|+|.+-+-++.||.... .+-|.+.++.++.+ +..|+ ...++- ++ ...++.. .+
T Consensus 22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~i--lm-~Y~N~i~-~~ 93 (250)
T PLN02591 22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPIV--LF-TYYNPIL-KR 93 (250)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCEE--EE-ecccHHH-Hh
Confidence 445567899999998888886211 11233444444433 44442 233321 22 1211211 11
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv 325 (398)
-+.++++.+.++|++.+.++|- .+++..++.+.++++ ....|-+=.-++ -..-...+++...|.=+. +|.
T Consensus 94 ---G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl~~I~lv~Ptt-~~~ri~~ia~~~~gFIY~-Vs~ 163 (250)
T PLN02591 94 ---GIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GIELVLLTTPTT-PTERMKAIAEASEGFVYL-VSS 163 (250)
T ss_pred ---HHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CCeEEEEeCCCC-CHHHHHHHHHhCCCcEEE-eeC
Confidence 2345677888999999999993 568888888888764 211233322333 333344555555554432 244
Q ss_pred ccCCCCCCCCCCCC-CccHHHHHHHHHh
Q 015894 326 SGLGGCPYAKGASG-NVATEDVVYMLNG 352 (398)
Q Consensus 326 ~GlGecp~a~graG-Na~lE~vv~~L~~ 352 (398)
.|..+ .+++ ...+++.+..+++
T Consensus 164 ~GvTG-----~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 164 TGVTG-----ARASVSGRVESLLQELKE 186 (250)
T ss_pred CCCcC-----CCcCCchhHHHHHHHHHh
Confidence 55544 1344 3567887888875
No 341
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.80 E-value=3.7 Score=41.47 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhCCC--CEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 246 PPSKVAYVSKQLYDMGC--SEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Ga--d~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
+++++ +-+..+.++|+ |.|.| |++- ..-..+.++++.+++.+|+.+|-.=- -+ -...+..++++||+.|.+
T Consensus 95 ~~~~~-~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~---V~-t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 95 KDDEY-DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGN---VG-TPEAVRELENAGADATKV 167 (326)
T ss_pred CHHHH-HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEe---cC-CHHHHHHHHHcCcCEEEE
Confidence 34444 44667778854 98877 4333 45578899999999999976554421 11 345667888999999876
Q ss_pred cccc
Q 015894 324 SVSG 327 (398)
Q Consensus 324 Sv~G 327 (398)
+..|
T Consensus 168 g~~~ 171 (326)
T PRK05458 168 GIGP 171 (326)
T ss_pred CCCC
Confidence 5544
No 342
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=90.74 E-value=13 Score=37.58 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHcCCCEEEEecc--------CchHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASESF--SKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r~ 245 (398)
++|.++|.|.|.|... +|+.. .+..+|-+.++-.+.+.++++.+|+. |.. |..-++..- ...+-.
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~--~~~~G~ 225 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE--DTEGGL 225 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh--ccCCCC
Confidence 4667899999988652 24433 23456778888888888888888875 544 332233110 001124
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEccC-----------cCc--CCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHH
Q 015894 246 PPSKVAYVSKQLYDMG-CSEISLGDT-----------IGV--GTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNI 310 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~G-ad~I~L~DT-----------~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANa 310 (398)
++++..++++.+.++| +|.|.+.-- ... ..+....++++.+++.+. +||..-+ -.| ..-+
T Consensus 226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi~~G~i~~----~~~~ 300 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVFHAGRIRD----PAEA 300 (343)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEEeeCCCCC----HHHH
Confidence 6788899999999998 899988311 000 011123456677777664 3444433 122 3445
Q ss_pred HHHHHhC-CCEE
Q 015894 311 LASLQMG-ISTV 321 (398)
Q Consensus 311 laAl~aG-a~~V 321 (398)
..+++.| +|.|
T Consensus 301 ~~~l~~~~~D~V 312 (343)
T cd04734 301 EQALAAGHADMV 312 (343)
T ss_pred HHHHHcCCCCee
Confidence 5566655 5544
No 343
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.72 E-value=3 Score=41.16 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcc-CcCcCCHHHHHHHHHHHHhhCCCC
Q 015894 216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGD-TIGVGTPGTVIPMLEAVLDAVPVD 293 (398)
Q Consensus 216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~D-T~G~~~P~~v~~lv~~l~~~~p~~ 293 (398)
+++.+.|++.|+-|-+ +. -++.+.+..+++.+.+.+... |.+.. +...+....+..++..+.+..+ +
T Consensus 2 k~lL~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V 70 (276)
T cd00947 2 KELLKKAREGGYAVGA-FN---------INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V 70 (276)
T ss_pred HHHHHHHHHCCceEEE-Ee---------eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence 4567889999997742 22 146788889999999998874 44443 2333445668888888877764 4
Q ss_pred eEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 294 KLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 294 ~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
|+.+|. |.|.-......|+++|.+ ++|+|-..+-+
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~ee 107 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFEE 107 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 666654 666678889999999998 67988876655
No 344
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.71 E-value=4.4 Score=40.14 Aligned_cols=134 Identities=14% Similarity=0.201 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEEEec-cCchHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFA-SASESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
.+.+.++|.+-+.+.- .+|-.+-..-. -.+.++.++.++++.+. -.++|.+.+- .+--++..+...++
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv~ 95 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTVR 95 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHH
Confidence 3455667887776631 11111000000 13677777776655543 4677764443 22234788888999
Q ss_pred HHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhCCCCeEEEEe------CCccchHHHHHHHHHHhCC
Q 015894 256 QLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAVPVDKLAVHF------HDTYGQALSNILASLQMGI 318 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p~~~l~~H~------Hnd~GlA~ANalaAl~aGa 318 (398)
++.++|+..|.|-|.++ +..+++....|++.++...+..+-+=. ...+--|+.-+.+..++||
T Consensus 96 ~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGA 175 (285)
T TIGR02317 96 EMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGA 175 (285)
T ss_pred HHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCC
Confidence 99999999999999873 345677777788877654322232222 2335578888899999999
Q ss_pred CEE
Q 015894 319 STV 321 (398)
Q Consensus 319 ~~V 321 (398)
|.|
T Consensus 176 D~v 178 (285)
T TIGR02317 176 DMI 178 (285)
T ss_pred CEE
Confidence 965
No 345
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.69 E-value=7.3 Score=38.78 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCCE-E-EEccCcCcCCHHHHHHHHHHHHhh
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCSE-I-SLGDTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad~-I-~L~DT~G~~~P~~v~~lv~~l~~~ 289 (398)
...+.++.|++.|..... ...|.-.+.+.+.+.+..+.+.+. +... | .++...|.-.|.+ ++..|. .
T Consensus 91 ~ai~~a~~A~~~Gad~vl-----v~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~---~l~~L~-~ 161 (309)
T cd00952 91 DTIARTRALLDLGADGTM-----LGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRA---AWAELA-Q 161 (309)
T ss_pred HHHHHHHHHHHhCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHH---HHHHHh-c
Confidence 344566788888887431 113544455677788877777654 2443 3 3677777555433 333443 3
Q ss_pred CCCCeEEE-EeCCccc
Q 015894 290 VPVDKLAV-HFHDTYG 304 (398)
Q Consensus 290 ~p~~~l~~-H~Hnd~G 304 (398)
.|++ +++ ..+ |..
T Consensus 162 ~pni-vgiKdss-d~~ 175 (309)
T cd00952 162 IPQV-VAAKYLG-DIG 175 (309)
T ss_pred CCCE-EEEEecC-ChH
Confidence 5764 555 344 443
No 346
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.68 E-value=2.2 Score=41.91 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG 317 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG 317 (398)
+..|.+-+.+.++.+.+.|++.|.++-|+| .+++++-.++++.+++..+ ..+|-+|. +++..-++..+..|-++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 568899999999999999999999999999 5677888888888887765 35666665 678899999999999999
Q ss_pred CCEEeecc
Q 015894 318 ISTVDSSV 325 (398)
Q Consensus 318 a~~VD~Sv 325 (398)
++.|=..-
T Consensus 97 ~d~v~~~p 104 (292)
T PRK03170 97 ADGALVVT 104 (292)
T ss_pred CCEEEECC
Confidence 99776643
No 347
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.65 E-value=9.9 Score=33.23 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHh
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK 201 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~ 201 (398)
--++..|.+.|++.|..|..+++ +++ ++.|.+.+++.|.+..-..
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~---------e~~---------------------v~aa~~~~adiVglS~L~t----- 61 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQ---------EEF---------------------IDAAIETDADAILVSSLYG----- 61 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecccc-----
Confidence 34667788999999999986653 333 3566777888888753221
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHH
Q 015894 202 SNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVI 280 (398)
Q Consensus 202 ~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~ 280 (398)
..+..++++++..++.|+ .+- +. .|..- ..+++...+..+++.++|++.++=++| .|.++.
T Consensus 62 --------~~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~~L~~~Gv~~vf~pgt----~~~~i~ 123 (128)
T cd02072 62 --------HGEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEKRFKEMGFDRVFAPGT----PPEEAI 123 (128)
T ss_pred --------CCHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence 123556677778888887 322 21 22210 124455556667788899998887776 555544
Q ss_pred H
Q 015894 281 P 281 (398)
Q Consensus 281 ~ 281 (398)
+
T Consensus 124 ~ 124 (128)
T cd02072 124 A 124 (128)
T ss_pred H
Confidence 3
No 348
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.59 E-value=17 Score=35.07 Aligned_cols=140 Identities=18% Similarity=0.152 Sum_probs=82.4
Q ss_pred CcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC
Q 015894 166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNI----NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP 240 (398)
Q Consensus 166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~----~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~ 240 (398)
-.+.+++ .+.-..+.+.++|++.|.+..+..-. ...+ ..+.++.+..++.+.+.++ ...|.+. .|
T Consensus 12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~--~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD------~~ 81 (240)
T cd06556 12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMT--VAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVAD------LP 81 (240)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHH--hcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEe------CC
Confidence 3444443 24444566677899988875432211 1111 2466777776655555432 1344432 33
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC------ccc----------
Q 015894 241 VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD------TYG---------- 304 (398)
Q Consensus 241 ~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn------d~G---------- 304 (398)
..+--+++.+.+.++++.++|++.|.|-|.. ++.+.++++++.- ++|-.|+=- +.|
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~ 153 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDE 153 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHH
Confidence 3332366888899999999999999999963 4556677777643 344444322 111
Q ss_pred ---hHHHHHHHHHHhCCCEEee
Q 015894 305 ---QALSNILASLQMGISTVDS 323 (398)
Q Consensus 305 ---lA~ANalaAl~aGa~~VD~ 323 (398)
-++.-+.+-.+|||+.|=.
T Consensus 154 ~~~~ai~Ra~ay~~AGAd~i~~ 175 (240)
T cd06556 154 AGEQLIADALAYAPAGADLIVM 175 (240)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 4466667777888886543
No 349
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.59 E-value=6.4 Score=38.14 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCcCCH
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGVGTP 276 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~~~P 276 (398)
..+.++.|++.|..... ...|.....+.+.+.+..+.+.+. +... -.++...|...+
T Consensus 81 ~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~ 140 (281)
T cd00408 81 AIELARHAEEAGADGVL-----VVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLS 140 (281)
T ss_pred HHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCC
Confidence 34555677777776431 113444445666666666666553 3332 234555565544
No 350
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=90.55 E-value=7.7 Score=39.00 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
.+..+.++.|.++|++.|++.+.. .+ ....+.++.+++ .|++.+.+ -+.+.++.+.+.++|+|.|.+-..-
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHS------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCc------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 344678888999999999986422 11 112344555553 34333332 2346788889999999998873221
Q ss_pred chHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 196 SESFSKS-NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 196 Sd~~~~~-~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
-..+... ..+..+. .+..+.++.+.+++.+++|-+ +.+-.++..+.+ .+ ++||+.+.+.
T Consensus 167 G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA---------~GGI~~~~di~k---Al-a~GA~~VmiG 226 (325)
T cd00381 167 GSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVIA---------DGGIRTSGDIVK---AL-AAGADAVMLG 226 (325)
T ss_pred CcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEe---------cCCCCCHHHHHH---HH-HcCCCEEEec
Confidence 0001000 1111111 334555666777777777641 334445554333 33 4999988664
No 351
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=90.43 E-value=16 Score=37.54 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=89.3
Q ss_pred HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
...|.|.+..++...+. ..+.+++-+.+....+++++. -..-... ...|| +.-+-..++.-.+-++.+.
T Consensus 134 ~~ig~DI~~~LD~~~~~------~~~~~~~~~sv~rT~rw~~~~~~~~~~~~~~-~~lfg-iVQGg~~~dLR~~sa~~l~ 205 (366)
T PRK00112 134 YDLGSDIVMAFDECPPY------PATYDYAKKSMERTLRWAERSRDAHDRLEND-QALFG-IVQGGVYEDLRRESAKGLV 205 (366)
T ss_pred HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ceEEE-EeeCCccHHHHHHHHHHHH
Confidence 35788887776544332 234445555554444444322 0000000 00121 3344456676677888899
Q ss_pred hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~GlGecp~a~g 336 (398)
+.+.+.+.|.--...-...++.++|..++..+| +.|..+ +|.+ ..+.+.++..|+|.+|++.--.=.
T Consensus 206 ~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~FD~~~p~r~A------ 274 (366)
T PRK00112 206 EIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDMFDCVMPTRNA------ 274 (366)
T ss_pred hCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCEEeeCCccccc------
Confidence 999999999986544678889999999999887 445443 4444 378999999999999988754333
Q ss_pred CCCCccH
Q 015894 337 ASGNVAT 343 (398)
Q Consensus 337 raGNa~l 343 (398)
|.|.+=+
T Consensus 275 r~G~alt 281 (366)
T PRK00112 275 RNGTLFT 281 (366)
T ss_pred cCCceeC
Confidence 5565543
No 352
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=90.41 E-value=6.6 Score=37.45 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+-.+.+.-.+.++.+.+.+.+.+.|.-........+..++++.+.+.+| +.+..++ ..| ...+.+.++..|+|.+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~---G~~-~P~~i~~~v~~GvD~f 138 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLL---GVG-TPEEILEAVYLGVDLF 138 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEET---TB--SHHHHHHHHHTT--EE
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceecc---CCC-CHHHHHHHHHcCCcEE
Confidence 3345666677788888877999999887766678999999999999887 5555442 222 5788999999999999
Q ss_pred eeccccC
Q 015894 322 DSSVSGL 328 (398)
Q Consensus 322 D~Sv~Gl 328 (398)
|++.--.
T Consensus 139 Ds~~p~~ 145 (238)
T PF01702_consen 139 DSSYPTR 145 (238)
T ss_dssp EESHHHH
T ss_pred cchHHHH
Confidence 9987543
No 353
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.41 E-value=3.2 Score=41.10 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~ 292 (398)
++++.+.|++.++-|- .+.. ++.+.+..+++.+.+.+... |.+... ...+....+..++..+.++..
T Consensus 6 ~k~il~~A~~~~yaV~-AfN~---------~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~- 74 (284)
T PRK09195 6 TKQMLNNAQRGGYAVP-AFNI---------HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH- 74 (284)
T ss_pred HHHHHHHHHHcCceEE-EEEe---------CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC-
Confidence 5677888999998773 3331 46789999999999999774 455442 233444567788888887764
Q ss_pred CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894 293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG 354 (398)
Q Consensus 293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G 354 (398)
+|+.+| =|.|.-+..+..|+++|.+ ++|+|-..+-+ |. -|-+++.+.+..|
T Consensus 75 VPV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~~g 128 (284)
T PRK09195 75 HPLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQ---------NISLVKEVVDFCHRFD 128 (284)
T ss_pred CCEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence 466655 4777778999999999998 66999887766 55 5566666666443
No 354
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=90.39 E-value=4.4 Score=40.16 Aligned_cols=121 Identities=18% Similarity=0.229 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCc-CCHHHHHHHHHHHHhhC
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGV-GTPGTVIPMLEAVLDAV 290 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~-~~P~~v~~lv~~l~~~~ 290 (398)
.++++.+.|++.|+-|- .+.+ ++.+.+..+++.+.+.+... |.+... ... ..+..+..++..+.++.
T Consensus 5 ~~k~iL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~ 74 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIP-AFNI---------NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAY 74 (288)
T ss_pred cHHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhc
Confidence 45677889999999775 2331 36788999999999999875 444332 222 33667777887777766
Q ss_pred C-CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 291 P-VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 291 p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
+ .+|+.+| =|.|.-...+..|+++|.+ ++|+|-..+-+ |. -|-+++...+..|+
T Consensus 75 ~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~~gv 132 (288)
T TIGR00167 75 PYGVPVALH--LDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE---------NIELTKKVVERAHKMGV 132 (288)
T ss_pred cCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence 2 3566655 4777788999999999998 67999887766 54 45566666654433
No 355
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=90.39 E-value=2.4 Score=44.52 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
+..+-++.+.++|++.|.+--+-| .-..+.+.++.+++.+|+.+|.+ -...-...+..++++||+.|.+++.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence 344556788899999988733333 33578899999999999878777 3344567788899999999999763
No 356
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.35 E-value=4.3 Score=38.44 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.+++...++++.+.+.|++.|-+. .-+| ...+.|+.+++.+|+..|+..+=-|. ..+-.|+++||+++=+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence 478999999999999999998887 4456 56677899999999888888777666 6678899999997643
No 357
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=90.31 E-value=19 Score=35.21 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC-----HhhHHHHHHcCC
Q 015894 114 NIVPAVVKVELIKLLVSSG-LAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN-----LKGFEAAVAAGA 186 (398)
Q Consensus 114 ~~~~~~~k~~ia~~L~~aG-v~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n-----~~~ie~a~~~Gv 186 (398)
..+++++..++...+.+.| +..+-++.. . |-+ .|..++.+.+++..+.++. +..| ..-++...++|+
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gG-E----Pll~~d~~ei~~~~~~~~~~~~~-~~TnG~~~~~~~~~~l~~~g~ 119 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGG-E----PLLRPDLLEIVEYARKKGGIRVS-LSTNGTLLTEEVLEKLKEAGL 119 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCC-C----ccccccHHHHHHHHhhcCCeEEE-EeCCCccCCHHHHHHHHhcCC
Confidence 3567788788999999999 666655432 1 112 3556666666644444433 3333 256677788999
Q ss_pred CEEEEeccCchHHH-hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 187 KEVAIFASASESFS-KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 187 ~~v~i~~~~Sd~~~-~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
+.|.|.+...+.-. .... ..+-++++..+.++.+++.|+.+..+... .+.+.+.+.++++.+.+.|++.+
T Consensus 120 ~~v~iSid~~~~e~hd~~r--g~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n~~~l~~~~~~~~~~g~~~~ 190 (347)
T COG0535 120 DYVSISLDGLDPETHDPIR--GVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKINYDELPEIADLAAELGVDEL 190 (347)
T ss_pred cEEEEEecCCChhhhhhhc--CCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCcHHHHHHHHHHHHHcCCCEE
Confidence 99998766544221 1111 22346677788889999999975433332 24567888899999999998765
Q ss_pred EE
Q 015894 266 SL 267 (398)
Q Consensus 266 ~L 267 (398)
.+
T Consensus 191 ~~ 192 (347)
T COG0535 191 NV 192 (347)
T ss_pred EE
Confidence 44
No 358
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=90.30 E-value=17 Score=35.91 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEE---c-cC---cC-----cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISL---G-DT---IG-----VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA 312 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L---~-DT---~G-----~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala 312 (398)
.+++.+.++++.+.+.|+|.|.| | .+ -| .-.|+.+.++++.+++... +||.+-..-+..--..-+.+
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence 47899999999998899998766 2 22 12 1469999999999998764 46777766554433344455
Q ss_pred HHHhCCCEEe
Q 015894 313 SLQMGISTVD 322 (398)
Q Consensus 313 Al~aGa~~VD 322 (398)
+.++||+.|-
T Consensus 189 ~~~~Gadgi~ 198 (299)
T cd02940 189 AKEGGADGVS 198 (299)
T ss_pred HHHcCCCEEE
Confidence 6789999664
No 359
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.26 E-value=4.3 Score=39.91 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
.++.|.+.+.++++.+.+.|++.|.+.-|+|-+ +.++-.++++.+.+... .++|-+|.-.+..-++..+..|-++|
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~G 94 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAG 94 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 357899999999999999999999999999855 45666667777666653 45666666557778888999999999
Q ss_pred CCEEee
Q 015894 318 ISTVDS 323 (398)
Q Consensus 318 a~~VD~ 323 (398)
|+.+=.
T Consensus 95 ad~v~~ 100 (289)
T cd00951 95 ADGILL 100 (289)
T ss_pred CCEEEE
Confidence 998744
No 360
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=90.20 E-value=12 Score=32.83 Aligned_cols=172 Identities=20% Similarity=0.146 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHHhccCCcEEEE--eCCH-hhH----HHHHHcCCCEEE
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQNVEGARFPVL--TPNL-KGF----EAAVAAGAKEVA 190 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~-~~i----e~a~~~Gv~~v~ 190 (398)
+.-.++++.+.+.|++.++++.... +.... ....+.+..+....+..+.+- ..+. ..+ +.+.+.|++.|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 5667899999999999999987542 21111 111122333333334443332 2222 222 478889999998
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
+-...-.. .+...+.++.+++. ++.+...+.. .. +.+. + .+.++|++.|.+.
T Consensus 90 l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~~----~-~~~~~g~d~i~~~ 143 (200)
T cd04722 90 IHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELAA----A-AAEEAGVDEVGLG 143 (200)
T ss_pred EeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccch----h-hHHHcCCCEEEEc
Confidence 86543110 12234455555554 6665533321 11 1111 0 1678899999887
Q ss_pred cCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCEEee
Q 015894 269 DTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGISTVDS 323 (398)
Q Consensus 269 DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~VD~ 323 (398)
...+... +......+..+++. +..++.. +-|... .++..++++||+.|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 144 NGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 7554322 11112334444433 3345554 345655 7788888889998865
No 361
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=90.17 E-value=12 Score=39.07 Aligned_cols=87 Identities=14% Similarity=0.033 Sum_probs=60.5
Q ss_pred HhhHHHHHHcCCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCHHHHHH
Q 015894 175 LKGFEAAVAAGAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIPV-RGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 175 ~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v-~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
.+-++...++|+..|.+-+- .++-. ...+|+. ...+.+.++++.+++.|+.+ .+.++ +|.|.. +++.+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~-L~~l~R~--~~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~ 212 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSE-LHALHRP--QKRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWME 212 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHH-HHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHH
Confidence 45678888899999888544 33433 3344443 23456677889999999974 45554 676754 6788888
Q ss_pred HHHHHHhCCCCEEEEcc
Q 015894 253 VSKQLYDMGCSEISLGD 269 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~D 269 (398)
.++.+.+.|++.|.+-.
T Consensus 213 ~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 213 SLDQALVYRPEELFLYP 229 (430)
T ss_pred HHHHHHhCCCCEEEEcc
Confidence 89999999998876543
No 362
>PRK08444 hypothetical protein; Provisional
Probab=90.08 E-value=1.2 Score=45.46 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH----HHHHHHHHHHHhhCCCCeEEEEeCC-----------ccchHH
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP----GTVIPMLEAVLDAVPVDKLAVHFHD-----------TYGQAL 307 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P----~~v~~lv~~l~~~~p~~~l~~H~Hn-----------d~GlA~ 307 (398)
...+++.+.+.++++.+.|+.+|.|. .| ..| +.+.++++.+++.+|.+ |.|- ..|+.+
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~i----~i~a~s~~Ei~~~a~~~g~~~ 150 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPNL----HVKAMTAAEVDFLSRKFGKSY 150 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCCc----eEeeCCHHHHHHHHHHcCCCH
Confidence 45788999999999999999999998 23 333 67889999999988863 4444 788888
Q ss_pred HHHHHHH-HhCCCEEeeccccCCCCCC-----CCCCCCCccHHHHHHH---HHhCCCC
Q 015894 308 SNILASL-QMGISTVDSSVSGLGGCPY-----AKGASGNVATEDVVYM---LNGLGVR 356 (398)
Q Consensus 308 ANalaAl-~aGa~~VD~Sv~GlGecp~-----a~graGNa~lE~vv~~---L~~~Gi~ 356 (398)
--.+..+ +||++.+.. -|.=-| ..-.++..+.++.+.. .+++|+.
T Consensus 151 ~e~l~~LkeAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~ 204 (353)
T PRK08444 151 EEVLEDMLEYGVDSMPG----GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKM 204 (353)
T ss_pred HHHHHHHHHhCcccCCC----CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 7777776 589986653 111001 0112445666665555 4456765
No 363
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=89.91 E-value=16 Score=34.31 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHH----HHHHHhc----cCCcEEEEeCCHhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDV----MAAIQNV----EGARFPVLTPNLKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v----~~~i~~~----~~~~l~~l~~n~~~ie~a~~~G 185 (398)
.++.+..++=+..+.+.|.++|++|.-. .|..-+ -+.++. ...++.+ +++.++.=+++.+-++.+++.|
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~--v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g 92 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATP--VSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAG 92 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSS--SHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCc--CCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcC
Confidence 3555666677999999999999999654 232211 122222 2233322 3555555567888899999999
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH----HHHHHHHH-----
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS----KVAYVSKQ----- 256 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~----~l~~~a~~----- 256 (398)
++.|.-..+..+ ..+++..++++|..+. +++.-+.|..-..+++ .+.++.+.
T Consensus 93 ~~~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 153 (210)
T PF00809_consen 93 ADIINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGNPKGMPETADYRLDIAEEIIEFLEERI 153 (210)
T ss_dssp SSEEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSETTTTTSSHHHSHSHHHHHHHHHHHHH
T ss_pred cceEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccccccccccchhhhhHHHHHHHHHHHHH
Confidence 997765444321 2355677888888664 4433322322222222 23333333
Q ss_pred --HHhCCC--CEEEEccCcCcC-CHHHHHHHHHHHH
Q 015894 257 --LYDMGC--SEISLGDTIGVG-TPGTVIPMLEAVL 287 (398)
Q Consensus 257 --l~~~Ga--d~I~L~DT~G~~-~P~~v~~lv~~l~ 287 (398)
+..+|+ +.|.+==-+|.. ++.+-.++++.++
T Consensus 154 ~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 154 EALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp HHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred HHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 444898 567665455553 2445555555444
No 364
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=89.73 E-value=14 Score=36.48 Aligned_cols=82 Identities=7% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCC--EEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCS--EISLGDTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~ 289 (398)
...+.++.|++.|..... ...|.-...+.+.+.+..+.+.++ +.. .-.++...|...|.+ ++..+.++
T Consensus 83 ~ai~~a~~A~~~Gad~v~-----v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~---~l~~L~~~ 154 (294)
T TIGR02313 83 ETLELTKFAEEAGADAAM-----VIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPK---TMARLRKD 154 (294)
T ss_pred HHHHHHHHHHHcCCCEEE-----EcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHH---HHHHHHhh
Confidence 334556778888886531 224555555667777766666543 333 335566777665533 44455555
Q ss_pred CCCCeEEE-EeCCccc
Q 015894 290 VPVDKLAV-HFHDTYG 304 (398)
Q Consensus 290 ~p~~~l~~-H~Hnd~G 304 (398)
.|++ +++ +.+.|..
T Consensus 155 ~pnv-~giK~ss~d~~ 169 (294)
T TIGR02313 155 CPNI-VGAKESNKDFE 169 (294)
T ss_pred CCCE-EEEEeCCCCHH
Confidence 6764 555 4555543
No 365
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=89.66 E-value=9.6 Score=41.44 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cC--CcEEEEe-CCHhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EG--ARFPVLT-PNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~--~~l~~l~-~n~~~ie~a~~~Gv~~v~ 190 (398)
-+++..++-+..|.++|.+.+-++.+. +.+++.+....+.+ .+ +.+.+=. -+.+-...|++. ++.||
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~-------~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~kiR 109 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG-------VREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AEKVR 109 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hCCEE
Confidence 456667888899999999999998643 23444333332332 22 3333322 233323445666 88888
Q ss_pred EeccCchHHH----------hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHHH----H
Q 015894 191 IFASASESFS----------KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GM--VPPSKV----A 251 (398)
Q Consensus 191 i~~~~Sd~~~----------~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r--~~~~~l----~ 251 (398)
|=-. |=... ...+....+..-+++..+++.||++|..++..+. .|+-.. .+ .+|+-+ +
T Consensus 110 INPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--~GSL~~~i~~~yg~tpe~mVeSAl 186 (611)
T PRK02048 110 INPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--HGSLSDRIMSRYGDTPEGMVESCM 186 (611)
T ss_pred ECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHHH
Confidence 8211 10000 0001111233346677899999999999996555 333110 11 244433 3
Q ss_pred HHHHHHHhCCCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCC
Q 015894 252 YVSKQLYDMGCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGI 318 (398)
Q Consensus 252 ~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa 318 (398)
+.++.+.+.|-+. |+++.|.-.-.=...+.++..+.+.--+-||+++..-. |... ...-+|+..|.
T Consensus 187 e~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEA-G~~edg~IKSAigiGa 255 (611)
T PRK02048 187 EFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEA-GDGEDGRIKSAVGIGA 255 (611)
T ss_pred HHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecC-CCCcCceehhHHHHHH
Confidence 4566777888763 67777765333344555555554432223466555554 3222 23344444553
No 366
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.63 E-value=9.7 Score=33.97 Aligned_cols=94 Identities=26% Similarity=0.379 Sum_probs=63.5
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhh
Q 015894 123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKS 202 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~ 202 (398)
-++++|.++|+++|-.|.+.+| +| -+++|++..++.|.+. +.+-.
T Consensus 31 via~~l~d~GfeVi~~g~~~tp---------~e---------------------~v~aA~~~dv~vIgvS-sl~g~---- 75 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTP---------EE---------------------AVRAAVEEDVDVIGVS-SLDGG---- 75 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCH---------HH---------------------HHHHHHhcCCCEEEEE-eccch----
Confidence 4788899999999998877653 22 2346677788877774 33333
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 203 NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 203 ~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
....+..+++.+++.|..-.. ...| +-.+++. ...+.++|+++|.-+.|
T Consensus 76 --------h~~l~~~lve~lre~G~~~i~---v~~G----Gvip~~d----~~~l~~~G~~~if~pgt 124 (143)
T COG2185 76 --------HLTLVPGLVEALREAGVEDIL---VVVG----GVIPPGD----YQELKEMGVDRIFGPGT 124 (143)
T ss_pred --------HHHHHHHHHHHHHHhCCcceE---Eeec----CccCchh----HHHHHHhCcceeeCCCC
Confidence 356677889999999986431 1122 3345555 44567899999998865
No 367
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.62 E-value=3.9 Score=40.50 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCCHHHHHHHHHHHHhhCC
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p 291 (398)
.++++.+.|++.++-|- .+.+ ++.+.+..+++.+.+.+... |.+.... ....-..+..++..+.++.+
T Consensus 5 ~~k~iL~~A~~~~yaV~-AfNv---------~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVG-AFNC---------NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEE-EEEe---------CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 35677888999998764 2321 36788889999999998774 5555432 22233456677777777765
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
+|+.+| =|.|........|+++|.+ ++|+|-..+-+ |. -|.+++.+.+..|+
T Consensus 75 -VPValH--LDH~~~~e~i~~ai~~GftSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~~gv 129 (284)
T PRK12857 75 -VPVALH--LDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE---------NIALTKKVVEIAHAVGV 129 (284)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence 466655 4777778899999999998 67999988877 65 56778777764433
No 368
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=89.62 E-value=2 Score=44.05 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=44.3
Q ss_pred hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
..|.+.|.-+=.-++-+|+++.++|..||+..|..||++-.=-..+.....+. +.++|+|.| +|.|-++
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~I--tIDG~~G 238 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFI--TIDGAEG 238 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEE--EEE-TT-
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEE--EEeCCCC
Confidence 34777888777788889999999999999999888999987666665544443 889999965 3444454
No 369
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.61 E-value=3.2 Score=40.91 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHH
Q 015894 242 EGMVPPSKVAYVSKQLYDMG-CSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQ 315 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~G-ad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~ 315 (398)
.+..|.+.+.+.++.+.+.| ++.|.+.-|+|- +++++-.++++.+.+... .++|-+|. |++.--++..+..|-+
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999 999999999885 677888888888887764 46788885 8888999999999999
Q ss_pred hCCCEEee
Q 015894 316 MGISTVDS 323 (398)
Q Consensus 316 aGa~~VD~ 323 (398)
+||+.|=.
T Consensus 95 ~Gad~v~v 102 (290)
T TIGR00683 95 LGYDCLSA 102 (290)
T ss_pred hCCCEEEE
Confidence 99997766
No 370
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.49 E-value=11 Score=39.27 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec--C-CCCCcccCCCCHHHHHHHHHhccC---CcEEEEeC---CHhhHHHHHHc-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATS--F-VSPKWVPQLADAKDVMAAIQNVEG---ARFPVLTP---NLKGFEAAVAA- 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~--~-~~~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~---n~~~ie~a~~~- 184 (398)
..+.+..++-++.|.+.|++.|.+.. + ..++.... ....++++.+.+.++ +++....+ +.+-++...++
T Consensus 174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~ 252 (437)
T PRK14331 174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIP 252 (437)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCC
Confidence 45788888888888889999887742 1 11111100 134556655554443 23333223 22345666666
Q ss_pred -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
|...+++-+ +.|+.-++ .+++. ...+.+.++++.+++. |+.+.++++ +|.|.+ +.+.+.+..+.+.+.
T Consensus 253 ~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--vG~PgE---T~ed~~~tl~~l~~l 324 (437)
T PRK14331 253 QVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--VGFPTE---TEEDFEETLDVLKKV 324 (437)
T ss_pred ccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 478787743 44554443 35442 2234555677888887 888776666 676765 567777778888888
Q ss_pred CCCEEE
Q 015894 261 GCSEIS 266 (398)
Q Consensus 261 Gad~I~ 266 (398)
+.+.+.
T Consensus 325 ~~~~i~ 330 (437)
T PRK14331 325 EFEQVF 330 (437)
T ss_pred Ccceee
Confidence 877644
No 371
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=89.49 E-value=8.4 Score=41.06 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=88.6
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.-...|.|.+..++-..+ ...+++++-+.+....+.+++.--...-.=...| .+.-|-..++--.+-++.+
T Consensus 108 i~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~-giVQGg~~~dLR~~sa~~l 180 (487)
T PRK13533 108 LEFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGDMLWV-APVQGGTYPDLREESAREA 180 (487)
T ss_pred HHHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEE-EEecCCCCHHHHHHHHHHH
Confidence 34445578898877754333 2335555555555555544332100000000112 2344556788888899999
Q ss_pred HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccc
Q 015894 258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~ 326 (398)
.++|.+.+.|.-.++.+ ...++.+++..++..+| +.|+.+. |.| ..+...++..|+|.+|++.-
T Consensus 181 ~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~-----GvG~P~~i~~~V~lGvDlFD~v~p 249 (487)
T PRK13533 181 SKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLF-----GAGHPMMFALAVALGCDLFDSAAY 249 (487)
T ss_pred HhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEe-----CCCCHHHHHHHHHhCCCceeccHH
Confidence 99999999988766555 56889999999999986 5566553 444 46888999999999998753
No 372
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.47 E-value=16 Score=36.02 Aligned_cols=207 Identities=16% Similarity=0.126 Sum_probs=125.1
Q ss_pred CCCccEEEeCC---CcccCCCC----CCCC-CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh
Q 015894 94 VPGFVKIVEVG---PRDGLQNE----KNIV-PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN 162 (398)
Q Consensus 94 ~p~~I~i~D~T---LRDG~Q~~----~~~~-~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~ 162 (398)
..+.+.++|+. .+.|.... +..+ +.++.+.+|+.+.++|.+.+--|.|- +|. -.|-.+. +-+..+++
T Consensus 26 ~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPY-sFQGlge-~gL~~l~~ 103 (286)
T COG2876 26 VKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPY-SFQGLGE-EGLKLLKR 103 (286)
T ss_pred ccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcc-cccccCH-HHHHHHHH
Confidence 34456777765 44443221 2333 67888999999999999999988542 332 1222222 23334443
Q ss_pred cc-CCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894 163 VE-GARFPVL--TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC 239 (398)
Q Consensus 163 ~~-~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~ 239 (398)
.. ..-+.++ +.+.++++.+.+. +|.+.|-.- | -+.++ +.+.+-+.+.+|- +.-
T Consensus 104 a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGAR--------N-----MQNF~----LLke~G~~~kPvL--LKR---- 159 (286)
T COG2876 104 AADETGLPVVTEVMDVRDVEAAAEY-ADILQVGAR--------N-----MQNFA----LLKEVGRQNKPVL--LKR---- 159 (286)
T ss_pred HHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhccc--------c-----hhhhH----HHHHhcccCCCeE--Eec----
Confidence 22 2333344 4688999988887 777776422 0 01222 2233334455553 221
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEccC----cCcCCHHH--HHHHHHHHHhh--CCCCeEEE-EeCCccchHHHHH
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDT----IGVGTPGT--VIPMLEAVLDA--VPVDKLAV-HFHDTYGQALSNI 310 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT----~G~~~P~~--v~~lv~~l~~~--~p~~~l~~-H~Hnd~GlA~ANa 310 (398)
.--.+.++++..++-+...|...|.||.- .-..++.. +. -|-.+|+. +|.+ +.. |.-+..-+-..-+
T Consensus 160 --g~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~-aV~~~kq~THLPVi-vDpSH~~Grr~lv~pla 235 (286)
T COG2876 160 --GLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDIS-AVPILKQETHLPVI-VDPSHATGRRDLVEPLA 235 (286)
T ss_pred --CccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechH-HHHHHHhhcCCCEE-ECCCCcccchhhHHHHH
Confidence 11257899999999999999999999862 22233322 22 24445543 4632 333 8888899999999
Q ss_pred HHHHHhCCCEEeeccccCCC
Q 015894 311 LASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 311 laAl~aGa~~VD~Sv~GlGe 330 (398)
.||+.+||+.+-..+..=-+
T Consensus 236 ~AA~AaGAdglmiEVHp~P~ 255 (286)
T COG2876 236 KAAIAAGADGLMIEVHPDPE 255 (286)
T ss_pred HHHHhccCCeeEEEecCCcc
Confidence 99999999988777764433
No 373
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=89.45 E-value=1.4 Score=42.51 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=47.3
Q ss_pred HHHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHH--HHHHHHHHHHHHHHhCCCc
Q 015894 154 KDVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIE--DSLIRYRDVALAARELSIP 228 (398)
Q Consensus 154 ~~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~--~~l~~~~~~v~~ak~~G~~ 228 (398)
+.+...++++ .+++++.+. |..++++.|.+.|++.|-++.+ .+....-..... +.++++..+.++|+++|+.
T Consensus 111 ~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG---~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~ 187 (239)
T PF03740_consen 111 DRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTG---PYANAFDDAEEAEEELLERLRDAARYAHELGLG 187 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETH---HHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehh---HhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 4444445433 366777666 6788999999999999999765 222221111112 2369999999999999999
Q ss_pred EE
Q 015894 229 VR 230 (398)
Q Consensus 229 v~ 230 (398)
|.
T Consensus 188 Vn 189 (239)
T PF03740_consen 188 VN 189 (239)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 374
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=89.44 E-value=2.8 Score=43.06 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC-------cCcCCHHHHHHHHHH
Q 015894 213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT-------IGVGTPGTVIPMLEA 285 (398)
Q Consensus 213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT-------~G~~~P~~v~~lv~~ 285 (398)
+.+.++++.+|+.+..|- + |.++..+.++++.+.++|++.|.+-.| .|...|..+.++++.
T Consensus 119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~ 186 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE 186 (369)
T ss_pred HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence 445666777777763222 1 234567788999999999999998755 355678766666554
Q ss_pred HHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894 286 VLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 286 l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
++ +|+- + .+ -.....++.++++||+.|.
T Consensus 187 ----~~-IPVI-~--G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 187 ----LD-VPVI-A--GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred ----CC-CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence 33 3443 2 22 3345667888899999988
No 375
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.44 E-value=3.3 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
.++.|.+.+.++++.+.+.|++.|.+.-|+|- +++++-.++++.+.+... .+++-+|.-.+..-++..+..|-++|
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999984 567888888887777653 35666666546677888888899999
Q ss_pred CCEEee
Q 015894 318 ISTVDS 323 (398)
Q Consensus 318 a~~VD~ 323 (398)
++.|=.
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998744
No 376
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=89.39 E-value=6.2 Score=40.70 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=59.5
Q ss_pred HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
.+.++...++|+.+|.+-+-.-+-.....+|+. ...+.+.++++.+++.|+. +.+.++ +|.|.. +.+.+.+-
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~G~~~v~~dlI--~GlPgq---t~e~~~~t 187 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRS--HRVKDIFAAVDLIHQAGIENFSLDLI--SGLPHQ---TLEDWQAS 187 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence 456778888999988886544333334445442 2233445667888999998 666666 677754 57888888
Q ss_pred HHHHHhCCCCEEEE
Q 015894 254 SKQLYDMGCSEISL 267 (398)
Q Consensus 254 a~~l~~~Gad~I~L 267 (398)
++.+.+++++.|.+
T Consensus 188 l~~~~~l~p~~is~ 201 (400)
T PRK07379 188 LEAAIALNPTHLSC 201 (400)
T ss_pred HHHHHcCCCCEEEE
Confidence 88899999988754
No 377
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=89.32 E-value=2.5 Score=42.55 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEccCc-CcCCHHHHHHHH---HHH
Q 015894 212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS-EISLGDTI-GVGTPGTVIPML---EAV 286 (398)
Q Consensus 212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~lv---~~l 286 (398)
+-.++++.+.|++.|+-|-+ +. -.+.+.+..+++.+.+.+.. +|.+.... ..+.+..+..++ ..+
T Consensus 9 lv~~k~lL~~A~~~~yAV~A-fN---------~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~ 78 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPA-YN---------FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY 78 (321)
T ss_pred ccCHHHHHHHHHHCCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence 45567888999999997742 22 13678899999999999977 45555433 222222233344 444
Q ss_pred HhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 287 LDAVP-VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 287 ~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
.+... .+|+.+|. |.|.-...+..|+++|.+ ++|+|-..+-+
T Consensus 79 a~~a~~~VPV~lHL--DHg~~~e~i~~ai~~GftSVMiD~S~lp~ee 123 (321)
T PRK07084 79 AKELGCPIPIVLHL--DHGDSFELCKDCIDSGFSSVMIDGSHLPYEE 123 (321)
T ss_pred HHHcCCCCcEEEEC--CCCCCHHHHHHHHHcCCCEEEeeCCCCCHHH
Confidence 44331 35666654 667778899999999998 67999776554
No 378
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=89.32 E-value=8.2 Score=37.54 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=51.4
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+.+.-.+.+-+++.++.. +. +...+.++.|++.|..... ...|.....+.+.+.+..+.+
T Consensus 59 ~~~~~~~~~~~~~vi~gv~~~--------~~----~~~~~~a~~a~~~G~d~v~-----~~~P~~~~~~~~~l~~~~~~i 121 (284)
T cd00950 59 IEAVVEAVNGRVPVIAGTGSN--------NT----AEAIELTKRAEKAGADAAL-----VVTPYYNKPSQEGLYAHFKAI 121 (284)
T ss_pred HHHHHHHhCCCCcEEeccCCc--------cH----HHHHHHHHHHHHcCCCEEE-----EcccccCCCCHHHHHHHHHHH
Confidence 455555433455566665542 22 3334556778888887431 113444455667777777776
Q ss_pred HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE
Q 015894 258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH 298 (398)
Q Consensus 258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H 298 (398)
.+. +... ..++...|...+.+ ++..+.+ .|.+ +++.
T Consensus 122 a~~~~~pi~lYn~P~~~g~~ls~~---~~~~L~~-~p~v-~giK 160 (284)
T cd00950 122 AEATDLPVILYNVPGRTGVNIEPE---TVLRLAE-HPNI-VGIK 160 (284)
T ss_pred HhcCCCCEEEEEChhHhCCCCCHH---HHHHHhc-CCCE-EEEE
Confidence 664 4332 24555566544422 2333333 3653 5664
No 379
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=89.22 E-value=7.3 Score=38.12 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+++.-...+.++.+++.. ..+...+.++.|++.|..... ...|...+.+.+.+.+..+.+
T Consensus 57 ~~~~~~~~~~~~~vi~gv~~~------------s~~~~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~i~~~~~~i 119 (285)
T TIGR00674 57 IEFVVDLVNGRVPVIAGTGSN------------ATEEAISLTKFAEDVGADGFL-----VVTPYYNKPTQEGLYQHFKAI 119 (285)
T ss_pred HHHHHHHhCCCCeEEEeCCCc------------cHHHHHHHHHHHHHcCCCEEE-----EcCCcCCCCCHHHHHHHHHHH
Confidence 455555433455566665432 233344556788888887431 123544555677777766666
Q ss_pred HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCCcc
Q 015894 258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHDTY 303 (398)
Q Consensus 258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~ 303 (398)
.+. +... ..++...|.-.+.+ ++..+.+ .|++ +++ ..+.|.
T Consensus 120 ~~~~~~pi~lYn~P~~tg~~l~~~---~l~~L~~-~~~v-~giK~s~~d~ 164 (285)
T TIGR00674 120 AEEVDLPIILYNVPSRTGVSLYPE---TVKRLAE-EPNI-VAIKEATGNL 164 (285)
T ss_pred HhcCCCCEEEEECcHHhcCCCCHH---HHHHHHc-CCCE-EEEEeCCCCH
Confidence 553 3333 34555667555433 3333333 4553 566 455443
No 380
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=89.08 E-value=16 Score=37.96 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccC---CcEEEEeCC---HhhHHHHHHc-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEG---ARFPVLTPN---LKGFEAAVAA- 184 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~---~~l~~l~~n---~~~ie~a~~~- 184 (398)
..+.++.++=++.|.+.|++.|-+.-..-..+ .+......++++.+...++ +++....+. .+-++...+.
T Consensus 152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~ 231 (418)
T PRK14336 152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLP 231 (418)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcC
Confidence 57788888888899999999887752210001 1111234455555555443 233333332 2334445553
Q ss_pred -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
+...+++-+ +.||.-++ .+++. ...+.+.++++.+++. |+.+.++++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 232 ~~~~~l~lglQSgsd~vLk-~M~R~--~~~~~~~~~i~~lr~~~pgi~i~~d~I--vGfPGE---T~edf~~tl~fi~~~ 303 (418)
T PRK14336 232 KVCRSLSLPVQAGDDTILA-AMRRG--YTNQQYRELVERLKTAMPDISLQTDLI--VGFPSE---TEEQFNQSYKLMADI 303 (418)
T ss_pred ccCCceecCCCcCCHHHHH-HhCCC--CCHHHHHHHHHHHHhhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 467777643 33444333 34332 1244556778888887 888877776 666765 467777777777888
Q ss_pred CCCEEE
Q 015894 261 GCSEIS 266 (398)
Q Consensus 261 Gad~I~ 266 (398)
+.+.+.
T Consensus 304 ~~~~~~ 309 (418)
T PRK14336 304 GYDAIH 309 (418)
T ss_pred CCCEEE
Confidence 877653
No 381
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=89.06 E-value=3.9 Score=43.26 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 015894 362 RKLMIAGDFICKHLGRT 378 (398)
Q Consensus 362 ~~L~~~~~~v~~~~g~~ 378 (398)
..+.++...+.+..+++
T Consensus 182 ~~v~~Lv~~lk~~~~vp 198 (467)
T PRK14041 182 KRAYELVKALKKKFGVP 198 (467)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 45555555555555433
No 382
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=89.06 E-value=25 Score=36.46 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC-C--CCCcccCCCCHHHHHHHHHhccCCcEE---EEeC---CHhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF-V--SPKWVPQLADAKDVMAAIQNVEGARFP---VLTP---NLKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~--~~~~~p~~~D~~~v~~~i~~~~~~~l~---~l~~---n~~~ie~a~~~G 185 (398)
..+.++.++=++.|.+.|++.|.+... . ...-........++++.+.+.++.... .+-+ +.+-++...++|
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~ 242 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP 242 (430)
T ss_pred ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence 357788888888888889988875421 1 000000012456677766654433221 1212 234456666764
Q ss_pred --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
...+++- =+.|+.-++ .+++. ...+.+.++++.++++ |+.+.++++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 243 ~~~~~l~iglES~s~~vLk-~m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~G~PgE---T~e~~~~t~~fl~~~ 314 (430)
T TIGR01125 243 KVLPYLDIPLQHASDRILK-LMRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--VGFPGE---TEEDFQELLDFVEEG 314 (430)
T ss_pred cccCceEeCCCCCCHHHHh-hCCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 6777763 445554333 34442 1235566777888887 455555554 777765 567777888888888
Q ss_pred CCCEE
Q 015894 261 GCSEI 265 (398)
Q Consensus 261 Gad~I 265 (398)
+.+.+
T Consensus 315 ~~~~~ 319 (430)
T TIGR01125 315 QFDRL 319 (430)
T ss_pred CCCEE
Confidence 87654
No 383
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.00 E-value=3.5 Score=40.59 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHH
Q 015894 242 EGMVPPSKVAYVSKQLYD-MGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQ 315 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~ 315 (398)
.+..|.+-+.++++.+.+ .|++.|.++-|+|- ++.++-.++++.+.+..+ .++|-++. +++.--++..+..|-+
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999 99999999999986 567777777887777765 36778887 7889999999999999
Q ss_pred hCCCEEeec
Q 015894 316 MGISTVDSS 324 (398)
Q Consensus 316 aGa~~VD~S 324 (398)
+||+.|=+.
T Consensus 98 ~Gad~v~v~ 106 (293)
T PRK04147 98 LGYDAISAV 106 (293)
T ss_pred cCCCEEEEe
Confidence 999977654
No 384
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.95 E-value=11 Score=36.71 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=84.9
Q ss_pred EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCC--CC
Q 015894 168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVE--GM 244 (398)
Q Consensus 168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~--~r 244 (398)
+-+.+-+..+...|.+.|+++|-+....+.- |.|+... .++.+++ ..++|.+-|= |.. .-
T Consensus 4 lEvcv~s~~~a~~A~~~GAdRiELc~~L~~G------GlTPS~g------~i~~~~~~~~ipv~vMIR-----PR~gdF~ 66 (248)
T PRK11572 4 LEICCYSMECALTAQQAGADRIELCAAPKEG------GLTPSLG------VLKSVRERVTIPVHPIIR-----PRGGDFC 66 (248)
T ss_pred EEEEECCHHHHHHHHHcCCCEEEEccCcCCC------CcCCCHH------HHHHHHHhcCCCeEEEEe-----cCCCCCC
Confidence 3455678889999999999999997654431 3443322 2333333 3676653332 222 24
Q ss_pred CCHHHHHH---HHHHHHhCCCCEEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH-HHHHhCC
Q 015894 245 VPPSKVAY---VSKQLYDMGCSEISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL-ASLQMGI 318 (398)
Q Consensus 245 ~~~~~l~~---~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal-aAl~aGa 318 (398)
|+.+++.. -++.+.++|++.|.+ =|.-|...-..+.++++.. .+.++.||-=-|.=.-.-.++ ..++.|+
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a----~~~~vTFHRAfD~~~d~~~al~~l~~lG~ 142 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA----GPLAVTFHRAFDMCANPLNALKQLADLGV 142 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh----cCCceEEechhhccCCHHHHHHHHHHcCC
Confidence 66665554 466777899997654 4666777777777777665 345788886655433223333 3567899
Q ss_pred CEEeec
Q 015894 319 STVDSS 324 (398)
Q Consensus 319 ~~VD~S 324 (398)
++|=||
T Consensus 143 ~rILTS 148 (248)
T PRK11572 143 ARILTS 148 (248)
T ss_pred CEEECC
Confidence 999887
No 385
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.90 E-value=21 Score=38.30 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecC---CCCCcccC-CCCHHHHHHHHHhc--cCCcEEEEeC---CHhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSF---VSPKWVPQ-LADAKDVMAAIQNV--EGARFPVLTP---NLKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~~~~~p~-~~D~~~v~~~i~~~--~~~~l~~l~~---n~~~ie~a~~~G 185 (398)
..+.++.++-++.|.+.|+..|.+... ...+.... -....++++.+... +.+++...-+ +.+-++...+.|
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g 319 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGG 319 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcC
Confidence 467888898889999999987766421 11110000 01134555555543 2334444333 223456666777
Q ss_pred --CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 --AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 --v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
+..+++-+ +.|+.-++ .+|+. -..+.+.++++.+++. ++.+...++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 320 ~~~~~l~lgvQSgsd~vLk-~M~R~--~t~e~~~~~v~~lr~~~p~i~i~tdiI--vGfPgE---T~edf~~Tl~~v~~l 391 (509)
T PRK14327 320 NLVEHIHLPVQSGSTEVLK-IMARK--YTRESYLELVRKIKEAIPNVALTTDII--VGFPNE---TDEQFEETLSLYREV 391 (509)
T ss_pred CccceEEeccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCcEEeeeEE--EeCCCC---CHHHHHHHHHHHHHc
Confidence 56788754 34554443 34442 1234556777888887 555555554 777765 467777777778888
Q ss_pred CCCEEEE
Q 015894 261 GCSEISL 267 (398)
Q Consensus 261 Gad~I~L 267 (398)
+.+.+.+
T Consensus 392 ~~d~~~~ 398 (509)
T PRK14327 392 GFDHAYT 398 (509)
T ss_pred CCCeEEE
Confidence 8776543
No 386
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.87 E-value=11 Score=36.97 Aligned_cols=104 Identities=12% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+++.-.+.+-++.+++.. + .+...+.++.|++.|..... ...|.-...+.+.+.+..+.+
T Consensus 60 ~~~~~~~~~~~~~vi~gv~~~--------~----~~~~i~~a~~a~~~G~d~v~-----~~pP~~~~~~~~~i~~~~~~i 122 (292)
T PRK03170 60 IRAVVEAVNGRVPVIAGTGSN--------S----TAEAIELTKFAEKAGADGAL-----VVTPYYNKPTQEGLYQHFKAI 122 (292)
T ss_pred HHHHHHHhCCCCcEEeecCCc--------h----HHHHHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHH
Confidence 455555433445555555431 2 23344556778888886431 113544455667777777666
Q ss_pred HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE-eCCcc
Q 015894 258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH-FHDTY 303 (398)
Q Consensus 258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~ 303 (398)
.+. +... -.++...|...+. +++..+. ..|.+ +++. .+.|.
T Consensus 123 a~~~~~pv~lYn~P~~~g~~l~~---~~~~~L~-~~p~v-~giK~s~~d~ 167 (292)
T PRK03170 123 AEATDLPIILYNVPGRTGVDILP---ETVARLA-EHPNI-VGIKEATGDL 167 (292)
T ss_pred HhcCCCCEEEEECccccCCCCCH---HHHHHHH-cCCCE-EEEEECCCCH
Confidence 653 3332 2355566765553 3444443 46764 5663 45553
No 387
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.84 E-value=3.6 Score=40.05 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEeC-CccchHHHHHHHHHHhC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHFH-DTYGQALSNILASLQMG 317 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~H-nd~GlA~ANalaAl~aG 317 (398)
+..|.+.+.+.++.+.+.|++.|.+.-|+| .++.++-.++++.+.+... .++|-+|.- ++..-++..+..|.++|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999998 5667778888888887764 467777775 57888899999999999
Q ss_pred CCEEeecc
Q 015894 318 ISTVDSSV 325 (398)
Q Consensus 318 a~~VD~Sv 325 (398)
++.|=..-
T Consensus 96 ~d~v~~~~ 103 (284)
T cd00950 96 ADAALVVT 103 (284)
T ss_pred CCEEEEcc
Confidence 99876653
No 388
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.80 E-value=7.8 Score=38.57 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=84.7
Q ss_pred HHHHHHcCCCEEEEecc-Cc-hHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFAS-AS-ESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~-~S-d~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
.+.+.++|.+-+.+.-. ++ -.+-..-. -.+.++.++.++++++. ..++|.+.+- .+--++..+...+
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r~V 99 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIARTV 99 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHH
Confidence 45566788887766311 11 11000001 23677777777665553 3577754333 2323788899999
Q ss_pred HHHHhCCCCEEEEccCc-----C------cCCHHHHHHHHHHHHhhCCCCeEEEEe------CCccchHHHHHHHHHHhC
Q 015894 255 KQLYDMGCSEISLGDTI-----G------VGTPGTVIPMLEAVLDAVPVDKLAVHF------HDTYGQALSNILASLQMG 317 (398)
Q Consensus 255 ~~l~~~Gad~I~L~DT~-----G------~~~P~~v~~lv~~l~~~~p~~~l~~H~------Hnd~GlA~ANalaAl~aG 317 (398)
+++.++|+-.|.|-|.+ | +..++++...|++.++.-.+..+-+=. .+.+--|+.-+.+-.+||
T Consensus 100 ~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAG 179 (292)
T PRK11320 100 KSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAG 179 (292)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcC
Confidence 99999999999999987 3 345677777787777654222222222 233557888999999999
Q ss_pred CCEE
Q 015894 318 ISTV 321 (398)
Q Consensus 318 a~~V 321 (398)
||.|
T Consensus 180 AD~i 183 (292)
T PRK11320 180 ADMI 183 (292)
T ss_pred CCEE
Confidence 9965
No 389
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.80 E-value=12 Score=35.34 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE-EeCCHhhHHHHHHcCCCEEEE
Q 015894 116 VPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV-LTPNLKGFEAAVAAGAKEVAI 191 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i 191 (398)
.+.++.++.++.|.+. |.-.|++.. .. +=+.+++.+ .++++.+ .+-+..+...|+++|++.|..
T Consensus 61 ~~~e~~i~~a~~l~~~~~~~~iKIP~--T~----------~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP 128 (211)
T cd00956 61 TDAEGMVAEARKLASLGGNVVVKIPV--TE----------DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSP 128 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcC--cH----------hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEE
Confidence 5688889999999888 665666632 21 223333322 2555443 456888889999999999888
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
|+.--+ +.+. +.++.++++.+++++.|+....-. ++-.++..+.+ +..+|+|.+.++
T Consensus 129 ~vgR~~-----~~g~---dg~~~i~~i~~~~~~~~~~tkil~--------As~r~~~ei~~----a~~~Gad~vTv~ 185 (211)
T cd00956 129 FVGRID-----DLGG---DGMELIREIRTIFDNYGFDTKILA--------ASIRNPQHVIE----AALAGADAITLP 185 (211)
T ss_pred ecChHh-----hcCC---CHHHHHHHHHHHHHHcCCCceEEe--------cccCCHHHHHH----HHHcCCCEEEeC
Confidence 766221 2333 456777788899999998866322 12235555444 446999999886
No 390
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=88.78 E-value=8.4 Score=39.27 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST 320 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~ 320 (398)
.+++++.+.++.+.+.|+.+|.|. + |. ..++.+.++++.+++.+|.+.+++. -+...-...-.++|++.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence 478899999999999999999987 3 43 3356788899999888875433321 13333333334699998
Q ss_pred EeeccccC
Q 015894 321 VDSSVSGL 328 (398)
Q Consensus 321 VD~Sv~Gl 328 (398)
+...+-.+
T Consensus 176 ~~i~lET~ 183 (366)
T TIGR02351 176 VTVYQETY 183 (366)
T ss_pred EEEEeecC
Confidence 88777665
No 391
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.74 E-value=3.5 Score=39.75 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=68.4
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
++.+.+.|.+.|-|....-+. +. +.-.+.|+.+++.|+.|-..+---+..+ ....+++.+.+.++..
T Consensus 77 l~~~k~lGf~~IEiS~G~~~i--------~~----~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~~~ 143 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSMEI--------SL----EERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLINKD 143 (237)
T ss_pred HHHHHHcCCCEEEEcCCccCC--------CH----HHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHHHH
Confidence 457888999999997653322 22 3334778999999998854333222111 2247888999999999
Q ss_pred HhCCCCEE-----------EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894 258 YDMGCSEI-----------SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD 301 (398)
Q Consensus 258 ~~~Gad~I-----------~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn 301 (398)
.++||+.| .|.|..|......+..+++ ++|...+-|-.=+
T Consensus 144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~----~l~~eklifEAp~ 194 (237)
T TIGR03849 144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAE----NVDINKVIFEAPQ 194 (237)
T ss_pred HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHh----hCChhcEEEECCC
Confidence 99999765 4555566666655555554 4554345554443
No 392
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=88.70 E-value=9.2 Score=36.86 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHH----HHHHhc-cCCcEEEEeC-C------Hh--h-HHHHH
Q 015894 118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM----AAIQNV-EGARFPVLTP-N------LK--G-FEAAV 182 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~----~~i~~~-~~~~l~~l~~-n------~~--~-ie~a~ 182 (398)
+.....-+.....+|+++|-+|++....+ ...-+.+ +.++.. ++.++.+... . .. + .+.+.
T Consensus 66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~----~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~ 141 (235)
T PF04476_consen 66 PGTASLAALGAAATGVDYVKVGLFGCKDY----DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA 141 (235)
T ss_pred chHHHHHHHHHHhcCCCEEEEecCCCCCH----HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Confidence 34444445556678999999999854321 1111222 222322 3445544332 1 11 2 35678
Q ss_pred HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894 183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC 262 (398)
Q Consensus 183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga 262 (398)
++|.+.+.+ |...|.+-+..---..+.+.++++.++++|+.+- + ++-...+.+ ..+...++
T Consensus 142 ~aG~~gvMl-----DTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~a--L--------AGSL~~~di----~~L~~l~p 202 (235)
T PF04476_consen 142 EAGFDGVML-----DTADKDGGSLFDHLSEEELAEFVAQARAHGLMCA--L--------AGSLRFEDI----PRLKRLGP 202 (235)
T ss_pred HcCCCEEEE-----ecccCCCCchhhcCCHHHHHHHHHHHHHccchhh--c--------cccCChhHH----HHHHhcCC
Confidence 899988776 2222332221111235667789999999999764 2 233333443 34556888
Q ss_pred CEEEE----c---c-CcCcCCHHHHHHHHHH
Q 015894 263 SEISL----G---D-TIGVGTPGTVIPMLEA 285 (398)
Q Consensus 263 d~I~L----~---D-T~G~~~P~~v~~lv~~ 285 (398)
|.+.+ | | +.|.+.|+.|..+-+.
T Consensus 203 D~lGfRGAvC~ggdR~~G~id~~~V~~lr~~ 233 (235)
T PF04476_consen 203 DILGFRGAVCGGGDRRAGRIDPELVAALRAL 233 (235)
T ss_pred CEEEechhhCCCCCcCccccCHHHHHHHHHh
Confidence 87643 3 4 3589999988886554
No 393
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=88.70 E-value=18 Score=36.50 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhcc--CCcE-EEEeCC-----HhhHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNVE--GARF-PVLTPN-----LKGFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~~--~~~l-~~l~~n-----~~~ie~a~~ 183 (398)
.++.+.-.++++.+.+.+.....+.+... .|-+.. ..++++.+++.. +..+ ..+..| .+-++...+
T Consensus 38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~ 114 (370)
T PRK13758 38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSE 114 (370)
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHH
Confidence 46777777777766554434445554322 233321 235566666432 3332 234333 234556667
Q ss_pred cCCCEEEEeccCc-hHHHhhhcCCC--HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 184 AGAKEVAIFASAS-ESFSKSNINCT--IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 184 ~Gv~~v~i~~~~S-d~~~~~~~~~s--~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
.++ .|.|.+... +.| ..++.. ....++.+.+.++.+++.|+.+.+... + ++.+.+++.++++.+.+.
T Consensus 115 ~~~-~v~iSlDg~~~~h--d~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~--v-----~~~n~~~l~~i~~~~~~~ 184 (370)
T PRK13758 115 NKF-LVGLSMDGPKEIH--NLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCV--V-----TSNTARHVNKIYKYFKEK 184 (370)
T ss_pred cCc-eEEEeecCCHHHh--ccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEE--e-----ccccccCHHHHHHHHHHc
Confidence 775 677755443 333 122221 235677788888888888887654332 2 123455677788888889
Q ss_pred CCCEEEEc---cCcC--------cCCHHHHHHHHHHHHh
Q 015894 261 GCSEISLG---DTIG--------VGTPGTVIPMLEAVLD 288 (398)
Q Consensus 261 Gad~I~L~---DT~G--------~~~P~~v~~lv~~l~~ 288 (398)
|++.+.+. +..| .++|.+..+++..+.+
T Consensus 185 g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~ 223 (370)
T PRK13758 185 DFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD 223 (370)
T ss_pred CCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence 99877542 2222 3567777776666544
No 394
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.66 E-value=4.1 Score=40.19 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
+..|.+-+.++++.+.+.|++.|.+.-|+|- ++.++-.++++.+++... ..+|-+|.=.+..-++..+..|.++||
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999995 456777777777777654 356666654457778888889999999
Q ss_pred CEEee
Q 015894 319 STVDS 323 (398)
Q Consensus 319 ~~VD~ 323 (398)
+.+=.
T Consensus 101 dav~~ 105 (296)
T TIGR03249 101 DGYLL 105 (296)
T ss_pred CEEEE
Confidence 97733
No 395
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.60 E-value=10 Score=40.50 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894 113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT---PNLKGFEAAVAAGAKE 188 (398)
Q Consensus 113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~---~n~~~ie~a~~~Gv~~ 188 (398)
+....+++-.+.++.|.++|++.|++.. ++.+- .-.-+.++.++. .++ .+.+.+ -+.++.+.++++|+|.
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~--a~g~~---~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~aGAd~ 308 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCIDS--SEGYS---EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAEAGADF 308 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeecC--ccccc---HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHHcCCCE
Confidence 3445556677899999999999999972 32110 001123334443 332 233333 3567899999999999
Q ss_pred EEEeccCchHHHhh-hc--CCCHHHHHHHHHHHH-HHHHhCCCcEEEEEeeeecCCCCC-CCCHHHHHHHHHHHHhCCCC
Q 015894 189 VAIFASASESFSKS-NI--NCTIEDSLIRYRDVA-LAARELSIPVRGYLSCVVGCPVEG-MVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 189 v~i~~~~Sd~~~~~-~~--~~s~~~~l~~~~~~v-~~ak~~G~~v~~~l~~~fg~~~~~-r~~~~~l~~~a~~l~~~Gad 263 (398)
|.+-.+.--+-... ++ +...-.++..+.+++ +++++.|..+. +.. |.+ |+. -++++.+ ++|||
T Consensus 309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dgGir~~----gdi~KAl-a~GA~ 376 (502)
T PRK07107 309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DGGIVYD----YHMTLAL-AMGAD 376 (502)
T ss_pred EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cCCCCch----hHHHHHH-HcCCC
Confidence 98854433111111 22 333333444444444 24556685432 221 333 332 3456544 49999
Q ss_pred EEEEcc
Q 015894 264 EISLGD 269 (398)
Q Consensus 264 ~I~L~D 269 (398)
.+-+..
T Consensus 377 ~vm~G~ 382 (502)
T PRK07107 377 FIMLGR 382 (502)
T ss_pred eeeeCh
Confidence 887664
No 396
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=88.59 E-value=36 Score=36.11 Aligned_cols=245 Identities=18% Similarity=0.132 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeCCHhhHHHH---HHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLTPNLKGFEAA---VAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~n~~~ie~a---~~~Gv~~v~ 190 (398)
++.+++..| +.+.+.|++.|-+.+--++ .|...+.+.+... .++.+.+..-+..+++.+ ++. .| .
T Consensus 169 ltekD~~Dl-~~~~~~~~d~I~lskV~sa------~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~d--g 238 (473)
T TIGR01064 169 LSEKDKKDL-KFGVEQGVDMVAASFVRTA------EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SD--G 238 (473)
T ss_pred CCHHHHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CC--c
Confidence 566666554 5667899999877653332 2334444444432 255666666666555433 222 45 6
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE---eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL---SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l---~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
+++...|.-... + .++......+++..|+++|+.+-+.- .-+...|.-+|.+..++.. +...|+|.|.+
T Consensus 239 i~iG~gDL~~~l--g--~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~----~v~~G~d~v~l 310 (473)
T TIGR01064 239 IMVARGDLGVEI--P--AEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVAN----AILDGTDAVML 310 (473)
T ss_pred EEEchHHHHhhc--C--cHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHH----HHHcCCCEEEE
Confidence 666666765443 3 25666667889999999999875211 0012356666766655443 45689998877
Q ss_pred -ccCcCcCCHHHHHHHHHHHHhhCCC-CeEE--E-Ee-------C-CccchHHHHHHHHHHhCCC-EEeeccccCCC---
Q 015894 268 -GDTIGVGTPGTVIPMLEAVLDAVPV-DKLA--V-HF-------H-DTYGQALSNILASLQMGIS-TVDSSVSGLGG--- 330 (398)
Q Consensus 268 -~DT~G~~~P~~v~~lv~~l~~~~p~-~~l~--~-H~-------H-nd~GlA~ANalaAl~aGa~-~VD~Sv~GlGe--- 330 (398)
.||.=.-.|.+....+..+..+.-. .... + |. | -.-.+|.+....|-..+++ +|--|-.|--.
T Consensus 311 s~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~v 390 (473)
T TIGR01064 311 SGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLL 390 (473)
T ss_pred cchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHH
Confidence 5677777898888888777764321 0000 0 00 1 1134566666777788887 56666665432
Q ss_pred ------CCCCCCCCCCccHHHHHHHHHh-CCCCC------ccChHHHHHHHHHHHHHhCCCCCCC
Q 015894 331 ------CPYAKGASGNVATEDVVYMLNG-LGVRT------NVDIRKLMIAGDFICKHLGRTSGSK 382 (398)
Q Consensus 331 ------cp~a~graGNa~lE~vv~~L~~-~Gi~t------~iDl~~L~~~~~~v~~~~g~~~~~~ 382 (398)
|| - -+-.+-+.+...|.- .|+.+ .-|.+.+.+.+.......|.--+..
T Consensus 391 Sr~rp~~P---I-iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD 451 (473)
T TIGR01064 391 SKYRPNAP---I-IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGD 451 (473)
T ss_pred HhhCCCCC---E-EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence 22 0 123344777666664 46632 1244554444433344455544444
No 397
>TIGR01431 adm_rel adenosine deaminase-related growth factor. Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.
Probab=88.55 E-value=20 Score=38.12 Aligned_cols=159 Identities=14% Similarity=0.045 Sum_probs=95.0
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+.+.+-|+..+-+..+....+...+...+.++.++.+.+.++.+++.+- .+.+.+.++. . -..+++...+.++.+
T Consensus 204 ~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~---~-R~~~~~~~~~~~~~a 279 (479)
T TIGR01431 204 EEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSP---L-RNKDKEELDNYIKVA 279 (479)
T ss_pred HHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---c-CCCCHHHHHHHHHHH
Confidence 3455678877666655444454555666889999999999988876542 1333344321 1 124667666666666
Q ss_pred HhC---CCCEEEEccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccch---HHHHHHHHHHhCCCEEeecccc
Q 015894 258 YDM---GCSEISLGDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ---ALSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 258 ~~~---Gad~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl---A~ANalaAl~aGa~~VD~Sv~G 327 (398)
.++ -.+.|.=-|-+|.= .|....+.+..+++. .++++.+|+=.+.+. .-.|...|+..|+++|.=.+.
T Consensus 280 ~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~- 357 (479)
T TIGR01431 280 MELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFA- 357 (479)
T ss_pred HHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCccc-
Confidence 553 23344444777643 234444444433332 356799999877643 348999999999999854333
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894 328 LGGCPYAKGASGNVATEDVVYMLNGLGV 355 (398)
Q Consensus 328 lGecp~a~graGNa~lE~vv~~L~~~Gi 355 (398)
.+.-.+++..+++.+|
T Consensus 358 ------------l~~~P~l~~~vke~~I 373 (479)
T TIGR01431 358 ------------LVKHPLVLQMLKERNI 373 (479)
T ss_pred ------------ccCCHHHHHHHHHhCC
Confidence 1222456666766555
No 398
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.53 E-value=6.8 Score=38.21 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.5
Q ss_pred CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894 66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ 110 (398)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q 110 (398)
+.|..+++|+.+ +...++..|... .|.++|+++..+.+
T Consensus 9 G~q~~~~~f~~~----~~~~ia~~L~~~---GVd~IEvG~~~~~~ 46 (266)
T cd07944 9 GGYVNNWDFGDE----FVKAIYRALAAA---GIDYVEIGYRSSPE 46 (266)
T ss_pred CccccCccCCHH----HHHHHHHHHHHC---CCCEEEeecCCCCc
Confidence 557889999999 888899888865 68999999887754
No 399
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=88.48 E-value=4.9 Score=38.69 Aligned_cols=137 Identities=23% Similarity=0.240 Sum_probs=80.0
Q ss_pred hhHHHHHHcCCCEEEEe-ccCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIF-ASASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
-..+.+..+|.+-+.+. .+++-.+-..- --.|.+|.++.++++++.. .++|.+.+-.-| --++..+.+.
T Consensus 20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~Gy------G~~~~~v~~t 90 (238)
T PF13714_consen 20 LSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDADTGY------GNDPENVART 90 (238)
T ss_dssp HHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-TTTS------SSSHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEccccc------CchhHHHHHH
Confidence 34455566788876652 11111110000 1236778887776666654 677765443211 1248999999
Q ss_pred HHHHHhCCCCEEEEccC-cC-----cCCHHHHHHHHHHHHhhC--CCCeEEEEeC------CccchHHHHHHHHHHhCCC
Q 015894 254 SKQLYDMGCSEISLGDT-IG-----VGTPGTVIPMLEAVLDAV--PVDKLAVHFH------DTYGQALSNILASLQMGIS 319 (398)
Q Consensus 254 a~~l~~~Gad~I~L~DT-~G-----~~~P~~v~~lv~~l~~~~--p~~~l~~H~H------nd~GlA~ANalaAl~aGa~ 319 (398)
++.+.++|+..|.|-|. .| +..++++.+.|++.++.. ++.-|-.-+= ..+--|+.-+.+-.+||||
T Consensus 91 v~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD 170 (238)
T PF13714_consen 91 VRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGAD 170 (238)
T ss_dssp HHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999 34 456788888888888765 3322222221 1224567778888899999
Q ss_pred EE
Q 015894 320 TV 321 (398)
Q Consensus 320 ~V 321 (398)
.|
T Consensus 171 ~i 172 (238)
T PF13714_consen 171 MI 172 (238)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 400
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.48 E-value=4.2 Score=39.80 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG 317 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG 317 (398)
+..|.+.+.++++.+.+.|++.|.+.-|+|-. +.++-.++++.+.+... .+++-+|. +++..-++..+..|-++|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999998854 55666677777776653 35666665 567888999999999999
Q ss_pred CCEEeecc
Q 015894 318 ISTVDSSV 325 (398)
Q Consensus 318 a~~VD~Sv 325 (398)
|+.|=..-
T Consensus 94 ad~v~v~p 101 (285)
T TIGR00674 94 ADGFLVVT 101 (285)
T ss_pred CCEEEEcC
Confidence 99876653
No 401
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.44 E-value=9.7 Score=37.39 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEc----cCc--C---cCCHHHHHHHHHHHHhhCC
Q 015894 223 RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG--CSEISLG----DTI--G---VGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 223 k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G--ad~I~L~----DT~--G---~~~P~~v~~lv~~l~~~~p 291 (398)
++.+..+.+.|+ | .+++.+.+.++.+.+++ +|.|.|- -+. | ...|+.+.++++++++...
T Consensus 87 ~~~~~pl~~qi~---g------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 87 EEFPTPLIASVY---G------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred ccCCCcEEEEee---c------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 445555555453 1 35788888888888763 7776552 111 1 2478999999999998763
Q ss_pred CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894 292 VDKLAVHFHDTYGQALSNILASLQMGISTVDS 323 (398)
Q Consensus 292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~ 323 (398)
.||.+-.-.+..-...-+..+.++|++.|.+
T Consensus 158 -~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 158 -VPVFAKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred -CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 4677766434333445555667899998865
No 402
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=88.42 E-value=12 Score=34.97 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=72.0
Q ss_pred HHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
.+.+.++|+|.|.+-++. +....+..+|.+.++-.+.+.++++..++. ++.+.+-+...+ .+.+...++++
T Consensus 73 a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~~~~~~~~~ 145 (231)
T cd02801 73 AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDEEETLELAK 145 (231)
T ss_pred HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCchHHHHHHH
Confidence 345567899988774432 122333444555455556666677776654 445554343211 11157888999
Q ss_pred HHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHh-CCCEEee
Q 015894 256 QLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQM-GISTVDS 323 (398)
Q Consensus 256 ~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~a-Ga~~VD~ 323 (398)
.+.++|++.|.+-+-.. ...|. -.+.++.+++.. .+||..-+ |. ....+..+++. ||+.|-.
T Consensus 146 ~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~i~~~~-~ipvi~~G----gi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 146 ALEDAGASALTVHGRTREQRYSGPA-DWDYIAEIKEAV-SIPVIANG----DIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHhCCCEEEECCCCHHHcCCCCC-CHHHHHHHHhCC-CCeEEEeC----CCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999998865432 11222 234556666543 23444422 21 13344555555 5665543
No 403
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.36 E-value=24 Score=34.90 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=74.3
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+..++.|++.|.|-.-.+... .-..+.++-++++..+++..++. +..+. + |. +.+ ++++++
T Consensus 45 ~~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT--~~~----~va~~A 106 (282)
T PRK11613 45 NLMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DT--SKP----EVIRES 106 (282)
T ss_pred HHHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---EC--CCH----HHHHHH
Confidence 344678999999964322111 11357888899999999988853 54432 2 32 223 467777
Q ss_pred HhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc-----------------hHHHHHHHHHHhCCC-
Q 015894 258 YDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG-----------------QALSNILASLQMGIS- 319 (398)
Q Consensus 258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G-----------------lA~ANalaAl~aGa~- 319 (398)
.++|++.| -|..|.-.| .+.+. +++ +...-+-.|.+.+.. ......-.|..+|+.
T Consensus 107 L~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~ 179 (282)
T PRK11613 107 AKAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAK 179 (282)
T ss_pred HHcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCCh
Confidence 78899975 566676555 33333 333 322235667542111 122445567889997
Q ss_pred ---EEeeccccCCC
Q 015894 320 ---TVDSSVSGLGG 330 (398)
Q Consensus 320 ---~VD~Sv~GlGe 330 (398)
++|-. .|+|.
T Consensus 180 ~~IilDPG-iGF~k 192 (282)
T PRK11613 180 EKLLLDPG-FGFGK 192 (282)
T ss_pred hhEEEeCC-CCcCC
Confidence 78995 35555
No 404
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=88.36 E-value=8.5 Score=39.34 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCCCEE
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGISTV 321 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~V 321 (398)
.+++.+.+.++.+.+.|+.+|.|.- +.-...+..+.++++.+++.+|. +.+|. ..+ ..+-+..+ ++|++.+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~--i~i~~---g~l-t~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS--VSIEV---QPL-SEEEYAELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC--ceecc---CCC-CHHHHHHHHHcCCCEE
Confidence 5778888888888888888887763 22223457788888888877774 22322 223 33333443 6888888
Q ss_pred eeccccCC
Q 015894 322 DSSVSGLG 329 (398)
Q Consensus 322 D~Sv~GlG 329 (398)
+..+--+-
T Consensus 178 ~i~lET~~ 185 (371)
T PRK09240 178 TVYQETYN 185 (371)
T ss_pred EEEEecCC
Confidence 77766653
No 405
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.34 E-value=17 Score=35.78 Aligned_cols=39 Identities=8% Similarity=-0.136 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
+.++.|++.|.... + ...|.-.+.+.+.+.+..+.+.++
T Consensus 90 ~~a~~a~~~Gadav---~--~~pP~y~~~s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 90 EIARLAEKAGADGY---L--LLPPYLINGEQEGLYAHVEAVCES 128 (296)
T ss_pred HHHHHHHHhCCCEE---E--ECCCCCCCCCHHHHHHHHHHHHhc
Confidence 44566677777643 1 113444445566666666655543
No 406
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.31 E-value=26 Score=33.95 Aligned_cols=191 Identities=19% Similarity=0.218 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---h-cc-CCcEEEEe--CCHh----hHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---N-VE-GARFPVLT--PNLK----GFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~-~~-~~~l~~l~--~n~~----~ie~a~~ 183 (398)
.++.+.-.++++.|.+.|++.|-+...... .+.+ +.+|..+.++ + .. ++.+.+-+ .+.+ -.+.+.+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~l-s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTL-TDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccC-CHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 578888899999999999999877432221 1112 2344444443 2 22 34433322 2332 2456678
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS 263 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad 263 (398)
.|+|.+-+..+. + +..+.++.++.+.++++. -++.+..|-.-.+ .....+++.+.+++ + ...
T Consensus 91 ~Gad~v~v~pP~---y----~~~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~---tg~~l~~~~~~~L~----~-~~~ 152 (281)
T cd00408 91 AGADGVLVVPPY---Y----NKPSQEGIVAHFKAVADA---SDLPVILYNIPGR---TGVDLSPETIARLA----E-HPN 152 (281)
T ss_pred cCCCEEEECCCc---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEECccc---cCCCCCHHHHHHHh----c-CCC
Confidence 999999886542 2 224667777776665553 4677765443211 02345677666654 3 457
Q ss_pred EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894 264 EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT 343 (398)
Q Consensus 264 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l 343 (398)
.+.++||. ....++.++++.. ++ .+.+-.=+| ...+.++..|++ +++.|+ +|.--
T Consensus 153 v~giK~s~--~d~~~~~~~~~~~----~~-~~~v~~G~d-----~~~~~~l~~G~~---G~i~~~----------~n~~p 207 (281)
T cd00408 153 IVGIKDSS--GDLDRLTRLIALL----GP-DFAVLSGDD-----DLLLPALALGAD---GAISGA----------ANVAP 207 (281)
T ss_pred EEEEEeCC--CCHHHHHHHHHhc----CC-CeEEEEcch-----HHHHHHHHcCCC---EEEehH----------HhhCH
Confidence 89999997 3566666655443 32 244432222 455667888984 444443 35555
Q ss_pred HHHHHHHH
Q 015894 344 EDVVYMLN 351 (398)
Q Consensus 344 E~vv~~L~ 351 (398)
+.++...+
T Consensus 208 ~~~~~~~~ 215 (281)
T cd00408 208 KLAVALYE 215 (281)
T ss_pred HHHHHHHH
Confidence 55555554
No 407
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.27 E-value=29 Score=36.15 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccCCc-E--EEEeCC---HhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEGAR-F--PVLTPN---LKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~~~-l--~~l~~n---~~~ie~a~~~G 185 (398)
..+.++.++=++.|.+.|+..|.+....-..| .....+..++++.+..+++.. + ...-+. .+-++...+.|
T Consensus 168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~ 247 (434)
T PRK14330 168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSP 247 (434)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCC
Confidence 46788888888888888999876642100001 000112344555444444432 1 111121 23355556666
Q ss_pred --CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 --AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 --v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
...+++-+ +.|+--++ .+|+.. ..+.+.++++.+++. |+.+.++++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 248 ~~~~~l~iglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfPgE---T~edf~~tl~fi~~~ 319 (434)
T PRK14330 248 KVAKSIHLPVQSGSNRILK-LMNRRY--TREEYLELIEKIRSKVPDASISSDII--VGFPTE---TEEDFMETVDLVEKA 319 (434)
T ss_pred cccCceecCcCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 56677743 33554333 454432 345566778888886 666776665 677765 567777788888888
Q ss_pred CCCEEE
Q 015894 261 GCSEIS 266 (398)
Q Consensus 261 Gad~I~ 266 (398)
+.+.+.
T Consensus 320 ~~~~~~ 325 (434)
T PRK14330 320 QFERLN 325 (434)
T ss_pred CCCEEe
Confidence 887654
No 408
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=88.24 E-value=29 Score=36.15 Aligned_cols=144 Identities=14% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----ccCCCCHHHHHHHHHhccCCc---EEEEeC---CHhhHHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW-----VPQLADAKDVMAAIQNVEGAR---FPVLTP---NLKGFEAAVA 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~-----~p~~~D~~~v~~~i~~~~~~~---l~~l~~---n~~~ie~a~~ 183 (398)
..+.+..++-++.|.+.|+..|-+....-..| .+...+..++++.+...++.. +..+-+ +.+-++...+
T Consensus 173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~ 252 (438)
T TIGR01574 173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFAN 252 (438)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHh
Confidence 57888888888999999998876642110111 001113455566555444432 222223 2344666677
Q ss_pred cC--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894 184 AG--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY 258 (398)
Q Consensus 184 ~G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~ 258 (398)
+| ...+++-+ +.|+.-++. +++. ...+.+.++++.+++. |+.+.++++ +|.|.+ +++.+.+.++.+.
T Consensus 253 ~g~~~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~ir~~~~~i~i~~d~I--vG~PgE---t~ed~~~tl~~i~ 324 (438)
T TIGR01574 253 NPKLCKSMHLPVQSGSSEILKL-MKRG--YTREWYLNLVRKLRAACPNVSISTDII--VGFPGE---TEEDFEETLDLLR 324 (438)
T ss_pred CCCccCceeeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEeeCEE--EeCCCC---CHHHHHHHHHHHH
Confidence 77 77777754 445554443 5442 1223445566777766 666665565 676765 5677888888888
Q ss_pred hCCCCEEE
Q 015894 259 DMGCSEIS 266 (398)
Q Consensus 259 ~~Gad~I~ 266 (398)
+.+.+.+.
T Consensus 325 ~~~~~~~~ 332 (438)
T TIGR01574 325 EVEFDSAF 332 (438)
T ss_pred hcCCCeee
Confidence 88877554
No 409
>PLN02417 dihydrodipicolinate synthase
Probab=88.22 E-value=4.4 Score=39.67 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894 242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM 316 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a 316 (398)
.+..|.+-+.++++.+.+.|++.|.+.-|.|- ++.++-.++++.+.+..+ .++|-+|. +++.--++..+..|-++
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~ 95 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV 95 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999995 556777777777777654 35666665 77888999999999999
Q ss_pred CCCEEeec
Q 015894 317 GISTVDSS 324 (398)
Q Consensus 317 Ga~~VD~S 324 (398)
|++.|=..
T Consensus 96 Gadav~~~ 103 (280)
T PLN02417 96 GMHAALHI 103 (280)
T ss_pred CCCEEEEc
Confidence 99977654
No 410
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.19 E-value=23 Score=33.77 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCC-CcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchH
Q 015894 120 VKVELIKLLVSSGLAVVEATSFVSP-KWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES 198 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEvG~~~~~-~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~ 198 (398)
...+-|..|.++|++.|-.|--+.+ -..|.. | .++...+.+.. ...+.++....++.....|+.+|.+..+-.+-
T Consensus 55 ~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~-d-~ei~~~ie~~~--~v~vvTts~Avv~aL~al~a~ri~vlTPY~~e 130 (238)
T COG3473 55 YTERAALELADAGVDVIVYGCTSGSLIGGPGY-D-KEIAQRIEEAK--GVPVVTTSTAVVEALNALGAQRISVLTPYIDE 130 (238)
T ss_pred HHHHHHHhcCccccCEEEEeccceeeecCCch-h-HHHHHHHHhcc--CCceeechHHHHHHHHhhCcceEEEeccchhh
Confidence 3355777889999999998732211 000111 3 34555665433 44566666667777788899999998774331
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894 199 FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275 (398)
Q Consensus 199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~ 275 (398)
--+..+++..+.|++|.-..+ .|-++ -+|.+|..+.++++++..-++|.|.+. ++
T Consensus 131 ---------------vn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CT 188 (238)
T COG3473 131 ---------------VNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CT 188 (238)
T ss_pred ---------------hhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-----ee
Confidence 113456777789998753333 22223 368899999999999998899998886 45
Q ss_pred HHHHHHHHHHHHhhC
Q 015894 276 PGTVIPMLEAVLDAV 290 (398)
Q Consensus 276 P~~v~~lv~~l~~~~ 290 (398)
-.+..+.|..+-+..
T Consensus 189 nlRt~eii~~lE~~~ 203 (238)
T COG3473 189 NLRTFEIIEKLERDT 203 (238)
T ss_pred ccccHHHHHHHHHHh
Confidence 556667777776655
No 411
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=88.11 E-value=36 Score=35.40 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCC---CC-Ccc--cCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFV---SP-KWV--PQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAV 182 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~-~~~--p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~ 182 (398)
..+.++.++-++.|.+.|++.|-+.... .. ++. +...+..++++.+..+++. ++..+-+. .+-++...
T Consensus 155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~ 234 (420)
T PRK14339 155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA 234 (420)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence 4688999988999999999988774311 11 100 0012355666666554543 32222222 23356666
Q ss_pred Hc--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 183 AA--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 183 ~~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+. |...+++-+ +.||.-++ .+|+.. ..+.+.++++.+++. |+.+..+++ +|.|.+ +.+.+.+.++.+
T Consensus 235 ~~~~~~~~l~iglQSgsd~vLk-~M~R~~--t~~~~~~~v~~lr~~~p~i~i~~d~I--vGfPgE---Teedf~~Tl~fl 306 (420)
T PRK14339 235 KNPKICKSIHMPLQSGSSEILK-AMKRGY--TKEWFLNRAEKLRALVPEVSISTDII--VGFPGE---SDKDFEDTMDVL 306 (420)
T ss_pred cCCCccCceEeCCccCCHHHHH-hccCCC--CHHHHHHHHHHHHHHCCCCEEEEEEE--EECCCC---CHHHHHHHHHHH
Confidence 65 467788754 34554333 344421 234455667777776 666766665 677876 456677777777
Q ss_pred HhCCCCEE
Q 015894 258 YDMGCSEI 265 (398)
Q Consensus 258 ~~~Gad~I 265 (398)
.+.+.+.+
T Consensus 307 ~~l~~~~~ 314 (420)
T PRK14339 307 EKVRFEQI 314 (420)
T ss_pred HhcCCCEE
Confidence 77777654
No 412
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=88.06 E-value=10 Score=33.88 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CCCC------HH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GMVP------PS 248 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r~~------~~ 248 (398)
++.+.++|.+.|.+........ . +....+.++.+.++++|+.+............. .... .+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~-------~--~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 71 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPW-------D--EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE 71 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHH-------T--HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCccc-------c--cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence 4677888999888865421111 0 003455677788889999865322222211110 1122 56
Q ss_pred HHHHHHHHHHhCCCCEEEEc
Q 015894 249 KVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 249 ~l~~~a~~l~~~Gad~I~L~ 268 (398)
.+.+.++.+..+|++.+.+.
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~ 91 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVH 91 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEE
T ss_pred HHHHHHHHHHHhCCCceeec
Confidence 77778888888899887776
No 413
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=87.95 E-value=7.2 Score=39.45 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=73.5
Q ss_pred EEEeeeecCCCCCC----------CCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHH---HHHHHHHHHHhhCCC-CeE
Q 015894 231 GYLSCVVGCPVEGM----------VPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPG---TVIPMLEAVLDAVPV-DKL 295 (398)
Q Consensus 231 ~~l~~~fg~~~~~r----------~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~---~v~~lv~~l~~~~p~-~~l 295 (398)
++++|.|.+-|++. .++|++.+-.+..++..-+. =..=| |.+.|. .+.+++.++++. |. ..+
T Consensus 117 CnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlD--GqGEP~lYP~l~~lVqalk~~-~~v~vV 193 (414)
T COG2100 117 CNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLD--GQGEPLLYPHLVDLVQALKEH-KGVEVV 193 (414)
T ss_pred ccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEec--CCCCCccchhHHHHHHHHhcC-CCceEE
Confidence 35566664444443 57888888877777663222 23334 555664 456667777654 43 235
Q ss_pred EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894 296 AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 296 ~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
.+.+|-.. |.--.+-+-.+||.++|+.|+..+-. .++-+| .|+ ..+|++++.++++++.+ +
T Consensus 194 SmQTng~~-L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~-~dYdv~kvle~aE~i~~-a 254 (414)
T COG2100 194 SMQTNGVL-LSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGR-KDYDVKKVLEVAEYIAN-A 254 (414)
T ss_pred EEeeCcee-ccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCc-cccCHHHHHHHHHHHHh-C
Confidence 55554331 22222333347999999999998876 122122 254 35777777777777776 5
Q ss_pred CCCC
Q 015894 376 GRTS 379 (398)
Q Consensus 376 g~~~ 379 (398)
++.+
T Consensus 255 ~idv 258 (414)
T COG2100 255 GIDV 258 (414)
T ss_pred CCCE
Confidence 5443
No 414
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=87.95 E-value=13 Score=36.66 Aligned_cols=80 Identities=14% Similarity=0.048 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-C-CCC--EEEEccCcCcCCHHHHHHHHHHHHhhC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-M-GCS--EISLGDTIGVGTPGTVIPMLEAVLDAV 290 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~-Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~ 290 (398)
..+.++.|++.|..-.. ...|.-...+.+.+....+.+.+ . +.. ...++...|.-.|.+ ++..+.+ .
T Consensus 85 ~i~la~~a~~~Gad~v~-----v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~---~i~~L~~-~ 155 (290)
T TIGR00683 85 AVELGKYATELGYDCLS-----AVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIE---QFGELYK-N 155 (290)
T ss_pred HHHHHHHHHHhCCCEEE-----EeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHH---HHHHHhc-C
Confidence 34556778888887431 11355555667777777777754 3 333 345566677655533 2333333 5
Q ss_pred CCCeEEEE-eCCccc
Q 015894 291 PVDKLAVH-FHDTYG 304 (398)
Q Consensus 291 p~~~l~~H-~Hnd~G 304 (398)
|++ +++. .+.|..
T Consensus 156 pnv-~giK~s~~d~~ 169 (290)
T TIGR00683 156 PKV-LGVKFTAGDFY 169 (290)
T ss_pred CCE-EEEEeCCCCHH
Confidence 764 5653 555543
No 415
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=87.95 E-value=28 Score=34.03 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=82.6
Q ss_pred EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH---HHHHHHHHHHHhhCC-C----CeEEEEeCCccc
Q 015894 233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVP-V----DKLAVHFHDTYG 304 (398)
Q Consensus 233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P---~~v~~lv~~l~~~~p-~----~~l~~H~Hnd~G 304 (398)
++.+.|.|....++...+.+ ++.+.+.||++|-+.=-.|.+.- ..+.+-++.+++... + +.|+...=++..
T Consensus 69 v~tVigFP~G~~~t~~K~~E-a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee 147 (257)
T PRK05283 69 IATVTNFPHGNDDIDIALAE-TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEA 147 (257)
T ss_pred EEEEecCCCCCCcHHHHHHH-HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHH
Confidence 44556778755444455555 56777889999988777776655 445566666665433 1 236666566665
Q ss_pred hHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC---------CCC--Ccc-ChHHHHHHHHHHH
Q 015894 305 QALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL---------GVR--TNV-DIRKLMIAGDFIC 372 (398)
Q Consensus 305 lA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~---------Gi~--t~i-Dl~~L~~~~~~v~ 372 (398)
.=.-.+..|+++||++|=+|-+ .+ .+.+..|++..+.+.. |++ =|| +++...+.-+..+
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTG-f~--------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTG-KV--------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHH
Confidence 3344566799999999999865 32 2346777766654431 121 122 2455666666666
Q ss_pred HHhCC
Q 015894 373 KHLGR 377 (398)
Q Consensus 373 ~~~g~ 377 (398)
+.+|-
T Consensus 219 ~~lg~ 223 (257)
T PRK05283 219 EILGA 223 (257)
T ss_pred HHhCh
Confidence 76664
No 416
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=87.91 E-value=2.3 Score=41.24 Aligned_cols=170 Identities=17% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHHHhcC--CCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE--------EeCCH-hh-HHHHHHcCCCEE
Q 015894 124 LIKLLVSSG--LAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV--------LTPNL-KG-FEAAVAAGAKEV 189 (398)
Q Consensus 124 ia~~L~~aG--v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~--------l~~n~-~~-ie~a~~~Gv~~v 189 (398)
+-..|.-+| ||.+-+|+..+. +.+.+.+.+.+... -++.+.. +.++. ++ ++.+.+.|.+.|
T Consensus 27 ~~dlLe~ag~yID~~K~g~Gt~~-----l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~I 101 (244)
T PF02679_consen 27 LEDLLESAGDYIDFLKFGWGTSA-----LYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAI 101 (244)
T ss_dssp HHHHHHHHGGG-SEEEE-TTGGG-----GSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEE
T ss_pred HHHHHHHhhhhccEEEecCceee-----ecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEE
Confidence 444556666 888888875431 11122333334321 2332211 11332 23 577888999999
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CCCCHHHHHHHHHHHHhCCCCEEE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GMVPPSKVAYVSKQLYDMGCSEIS 266 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r~~~~~l~~~a~~l~~~Gad~I~ 266 (398)
-|....-++ + .+.-.+.|+.+++.|+.|-. .+|.-+. ...+++.+.+.++.-.++||+.|.
T Consensus 102 EiSdGti~l--------~----~~~r~~~I~~~~~~Gf~v~~----EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 165 (244)
T PF02679_consen 102 EISDGTIDL--------P----EEERLRLIRKAKEEGFKVLS----EVGKKDPESDFSLDPEELIEQAKRDLEAGADKVI 165 (244)
T ss_dssp EE--SSS---------------HHHHHHHHHHHCCTTSEEEE----EES-SSHHHHTT--CCHHHHHHHHHHHHTECEEE
T ss_pred EecCCceeC--------C----HHHHHHHHHHHHHCCCEEee----cccCCCchhcccCCHHHHHHHHHHHHHCCCCEEE
Confidence 997664332 2 23334678999999998853 2443221 234578889999999999999874
Q ss_pred ----------EccCcCcCCHHHHHHHHHH------------------HHhhC-CCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 267 ----------LGDTIGVGTPGTVIPMLEA------------------VLDAV-PVDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 267 ----------L~DT~G~~~P~~v~~lv~~------------------l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
|.|..|......+..+++. +.+++ |++.|+.=.|++ .-+|++++.|
T Consensus 166 iEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~I~~~G~~VNLgNI~~~e-----Vl~LE~LR~G 240 (244)
T PF02679_consen 166 IEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWFIKRFGPNVNLGNIAPSE-----VLALETLRRG 240 (244)
T ss_dssp E--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGG-----HHHHHHHHCT
T ss_pred EeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHHHHHhCCCcCcccCCHHH-----HHHHHHHhcc
Confidence 5777888888888887752 22333 667776655555 4566777766
Q ss_pred CC
Q 015894 318 IS 319 (398)
Q Consensus 318 a~ 319 (398)
.+
T Consensus 241 Lr 242 (244)
T PF02679_consen 241 LR 242 (244)
T ss_dssp -S
T ss_pred cc
Confidence 43
No 417
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.88 E-value=26 Score=36.73 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHH-
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVA- 183 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~- 183 (398)
..+.+..++=++.|.+.|++.|.+....- .+..+......++++.+..+++. ++..+-++ .+-++...+
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~ 255 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGEL 255 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhC
Confidence 46788888888889889999888753110 00000001234455555544443 33332232 233555555
Q ss_pred -cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894 184 -AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 184 -~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~ 259 (398)
.|...+++-+ +.|+.-++ .+|+. -..+.+.++++.+++. |+.+..+++ +|.|.+ +.+.+.+.++.+.+
T Consensus 256 ~~~~~~l~iglQSgsd~vLk-~M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~l~~ 327 (446)
T PRK14337 256 PNLCPRLHLPLQSGSDRILK-AMGRK--YDMARYLDIVTDLRAARPDIALTTDLI--VGFPGE---TEEDFEQTLEAMRT 327 (446)
T ss_pred CcccCeEEECCCCCCHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCC---CHHHHHHHHHHHHh
Confidence 3567787744 44554443 35542 1234455667777776 566666665 677866 46777888888888
Q ss_pred CCCCEEEE
Q 015894 260 MGCSEISL 267 (398)
Q Consensus 260 ~Gad~I~L 267 (398)
.+.+.+.+
T Consensus 328 ~~~~~~~~ 335 (446)
T PRK14337 328 VGFASSFS 335 (446)
T ss_pred cCCCeeEE
Confidence 88876544
No 418
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=87.86 E-value=4.6 Score=39.85 Aligned_cols=82 Identities=15% Similarity=0.072 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG 317 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG 317 (398)
+..|.+.+.++++.+.+.|++.|.+.-|+|-.. -++-.++++.+.+... .++|-+|. +++.--++..+..|-++|
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999654 5566666666666554 35676665 688888999999999999
Q ss_pred CCEEeec
Q 015894 318 ISTVDSS 324 (398)
Q Consensus 318 a~~VD~S 324 (398)
|+.|=..
T Consensus 96 ad~v~v~ 102 (294)
T TIGR02313 96 ADAAMVI 102 (294)
T ss_pred CCEEEEc
Confidence 9876544
No 419
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.76 E-value=20 Score=32.02 Aligned_cols=96 Identities=20% Similarity=0.122 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhC-CCCeEEEE--eCCccchHHHH--HHHHHHhCC
Q 015894 247 PSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAV-PVDKLAVH--FHDTYGQALSN--ILASLQMGI 318 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~-p~~~l~~H--~Hnd~GlA~AN--alaAl~aGa 318 (398)
.+...+.++.+.++|+|.+.+.-..+... +..+.+.++.+.+.. ++.++-+. .+.+....... +..+.+.|+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 67788889999999999998876665443 578888888888874 23444332 22221222111 223457899
Q ss_pred CEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894 319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLN 351 (398)
Q Consensus 319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~ 351 (398)
+.|-.+.... .|+..++.+....+
T Consensus 144 ~~iK~~~~~~---------~~~~~~~~~~~i~~ 167 (201)
T cd00945 144 DFIKTSTGFG---------GGGATVEDVKLMKE 167 (201)
T ss_pred CEEEeCCCCC---------CCCCCHHHHHHHHH
Confidence 9998876432 23455555554444
No 420
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=87.69 E-value=62 Score=38.49 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-------cCCcEEEEeCCHhh-----------HHHHHH
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-------EGARFPVLTPNLKG-----------FEAAVA 183 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-------~~~~l~~l~~n~~~-----------ie~a~~ 183 (398)
.+.++.|.+.|+|.|-+-...+. .+.+..+.+++.. ..+-+++-+....+ +.....
T Consensus 167 ~eQi~~L~e~GVDllliETi~d~------~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~ 240 (1229)
T PRK09490 167 REQTRGLIEGGADLILIETIFDT------LNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRH 240 (1229)
T ss_pred HHHHHHHHhCCCCEEEEeeeCCH------HHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhc
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHh
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQLYD 259 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~l~~ 259 (398)
.|++.|.+=++..+ +.+...++...+. ...+.++=. -|-|. ....+|+++.+.++.+.+
T Consensus 241 ~~~~avGlNCs~GP---------------~~m~~~l~~l~~~~~~pi~vyPN--AGlP~~~~~yd~tPe~~a~~~~~~~~ 303 (1229)
T PRK09490 241 AKPLSIGLNCALGA---------------DELRPYVEELSRIADTYVSAHPN--AGLPNAFGEYDETPEEMAAQIGEFAE 303 (1229)
T ss_pred CCCCEEEEcCCCcH---------------HHHHHHHHHHHHhcCCeEEEEeC--CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_pred CC-CCEE-EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC-------------------------------------
Q 015894 260 MG-CSEI-SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH------------------------------------- 300 (398)
Q Consensus 260 ~G-ad~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H------------------------------------- 300 (398)
.| +..| .-|=| +|++++.+.+.++..-|........+
T Consensus 304 ~G~v~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~ 379 (1229)
T PRK09490 304 SGFLNIVGGCCGT----TPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIK 379 (1229)
T ss_pred cCCCCEEEecCCC----CHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHH
Q ss_pred -CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHh
Q 015894 301 -DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHL 375 (398)
Q Consensus 301 -nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~ 375 (398)
.|+.-++.-+..-+++||++||+.+ |.+. ..+-..++.++..+.. ..+..-||..+-.-+..-+..+-
T Consensus 380 ~~d~~~al~~A~~qve~GA~iIDVn~-g~~~------id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~ 452 (1229)
T PRK09490 380 EEDYDEALDVARQQVENGAQIIDINM-DEGM------LDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ 452 (1229)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC
Q ss_pred CCCC
Q 015894 376 GRTS 379 (398)
Q Consensus 376 g~~~ 379 (398)
|.++
T Consensus 453 G~~I 456 (1229)
T PRK09490 453 GKGI 456 (1229)
T ss_pred CCCE
No 421
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.63 E-value=22 Score=36.45 Aligned_cols=140 Identities=12% Similarity=0.034 Sum_probs=83.3
Q ss_pred HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCC--CC
Q 015894 179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPV--EG 243 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~--~~ 243 (398)
++|.++|.|.|.|...- |+. +++..+|-+.+.-.+.+.++++.+|+. | +.|.+-++..-+... .+
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence 46678999988875432 122 244455678888888888999888885 5 345544542100111 11
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcCc-CCHH---HHHHHHHHHHhhCCCCeEEEEeCCccc---------------
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV-GTPG---TVIPMLEAVLDAVPVDKLAVHFHDTYG--------------- 304 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd~G--------------- 304 (398)
-.+++...++++.+.+.|+|.|.+.- |. ..|. .-..+...+++.++ +|+...+--+..
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~-~pv~~~G~i~~~~~~~~~~~~~~~~~~ 307 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTG-LPTITVGSVGLDGDFIGAFAGDEGASP 307 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcC-CCEEEECCccccccccccccccccccc
Confidence 25788889999999999999887632 21 1221 12345566777665 355555432111
Q ss_pred hHHHHHHHHHHhC-CCEE
Q 015894 305 QALSNILASLQMG-ISTV 321 (398)
Q Consensus 305 lA~ANalaAl~aG-a~~V 321 (398)
.....+..+++.| ||.|
T Consensus 308 ~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 308 ASLDRLLERLERGEFDLV 325 (361)
T ss_pred CCHHHHHHHHHCCCCCee
Confidence 2346677778766 6654
No 422
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.50 E-value=24 Score=37.69 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhccCC---cEEEEeC---CHhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNVEGA---RFPVLTP---NLKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~~~~---~l~~l~~---n~~~ie~a~~~G 185 (398)
..+.+..++=++.|.+.|+..|.+....-..|.-.+.+ ..++++.+..+++. ++....+ +.+-++...+.|
T Consensus 185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g 264 (502)
T PRK14326 185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETP 264 (502)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcC
Confidence 46788888888889888999887642110000000112 23444544444443 3332223 223356666776
Q ss_pred --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
...+++- =+.||.-++. +|+. ...+.+.++++.+++. |+.+..+++ +|.|.+ +.+.+.+.++.+.+.
T Consensus 265 ~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgE---T~edf~~Tl~~i~~~ 336 (502)
T PRK14326 265 NVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGE---TEEDFQATLDVVREA 336 (502)
T ss_pred CcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence 6777773 4556655443 5553 2334556677788875 667776666 677876 467777777777788
Q ss_pred CCCEE
Q 015894 261 GCSEI 265 (398)
Q Consensus 261 Gad~I 265 (398)
+.+.+
T Consensus 337 ~~~~~ 341 (502)
T PRK14326 337 RFSSA 341 (502)
T ss_pred CCCEE
Confidence 87643
No 423
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=87.33 E-value=7.4 Score=38.57 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcC-cCCHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHHHHH
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIG-VGTPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNILAS 313 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANalaA 313 (398)
..+++++.+.++.+.+.|+++|+|.+-.. ...+..+.++++.+++..|. +.+|+= ...|+...-.+..
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 46889999999999999999999984322 24557789999999998874 444421 2456666666666
Q ss_pred H-HhCCCEEe
Q 015894 314 L-QMGISTVD 322 (398)
Q Consensus 314 l-~aGa~~VD 322 (398)
+ +||++.+.
T Consensus 113 LkeAGl~~i~ 122 (309)
T TIGR00423 113 LKKAGLDSMP 122 (309)
T ss_pred HHHcCCCcCC
Confidence 6 47998774
No 424
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=87.31 E-value=33 Score=35.24 Aligned_cols=136 Identities=17% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHHHcCCCEEEEeccC---------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeee---ecC--
Q 015894 179 EAAVAAGAKEVAIFASA---------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCV---VGC-- 239 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~---------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~---fg~-- 239 (398)
++|.++|.|.|.|...- |+. ++...+|-+.++-++.+.++++.+|+. | +.|.+-++.. -+.
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 46678999998886421 111 223345667788788888888888875 3 3454444420 000
Q ss_pred ---C----CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc-----------C-CHHHHHHHHHHHHhhCCCCeEE-EEe
Q 015894 240 ---P----VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV-----------G-TPGTVIPMLEAVLDAVPVDKLA-VHF 299 (398)
Q Consensus 240 ---~----~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-----------~-~P~~v~~lv~~l~~~~p~~~l~-~H~ 299 (398)
| ..+-.++++..++++.+.++|+|.|.+.- |. . .+....++++.+++.+.. |+. ...
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~ 313 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDV-PVIMAGR 313 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCccCCcchhHHHHHHHHHHCCC-CEEEeCC
Confidence 0 01124678999999999999999998741 21 1 112224567778887643 443 333
Q ss_pred CCccchHHHHHHHHHHhC-CCEE
Q 015894 300 HDTYGQALSNILASLQMG-ISTV 321 (398)
Q Consensus 300 Hnd~GlA~ANalaAl~aG-a~~V 321 (398)
.++ ...+..+++.| +|.|
T Consensus 314 i~~----~~~~~~~l~~g~~D~V 332 (382)
T cd02931 314 MED----PELASEAINEGIADMI 332 (382)
T ss_pred CCC----HHHHHHHHHcCCCCee
Confidence 333 35566778777 5654
No 425
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.29 E-value=17 Score=38.75 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
++..+.++.|.+.|++.|-+-.-.... ....+.++.+| +.|+..+.+ =+-+.++.+.++++|+|.|.+-+..-
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~-----~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGHQ-----EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCcc-----HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 455689999999999987663211110 12234444555 345554333 23467888899999999998755431
Q ss_pred hH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 197 ES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 197 d~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
-+ -.+...+.++ -.+..+.++.+.|++.|..|. + +.+-.++.. +++ +.++||+.+.+.-
T Consensus 301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~vi---a------~ggi~~~~~---~~~-al~~ga~~v~~g~ 360 (479)
T PRK07807 301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVW---A------DGGVRHPRD---VAL-ALAAGASNVMIGS 360 (479)
T ss_pred cccccccccCCch-hHHHHHHHHHHHHHhcCCcEE---e------cCCCCCHHH---HHH-HHHcCCCeeeccH
Confidence 00 0011234444 356777888888889888764 1 344444544 333 3358999887654
No 426
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.21 E-value=24 Score=34.58 Aligned_cols=138 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHhcCCCEEEEecCCC------CCcccCCCCHHHHHHHHHhc------c----CCcEEEEeCCHhh----HHHHHH-
Q 015894 125 IKLLVSSGLAVVEATSFVS------PKWVPQLADAKDVMAAIQNV------E----GARFPVLTPNLKG----FEAAVA- 183 (398)
Q Consensus 125 a~~L~~aGv~~IEvG~~~~------~~~~p~~~D~~~v~~~i~~~------~----~~~l~~l~~n~~~----ie~a~~- 183 (398)
++.++++|++.|=+|.... |+..+ -+.++++..++.+ | ++.+.....+..+ ..+..+
T Consensus 28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~--vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~ 105 (264)
T PRK00311 28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLP--VTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKE 105 (264)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCC--cCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHH
Q ss_pred cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE--------------EEEeeeecCCCCCCCC--H
Q 015894 184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR--------------GYLSCVVGCPVEGMVP--P 247 (398)
Q Consensus 184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~--------------~~l~~~fg~~~~~r~~--~ 247 (398)
+|++-|.+-.+ ..+.+.|+.+.+.|++|. ++.. -+|++ .
T Consensus 106 aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i-------~grt~~~a 160 (264)
T PRK00311 106 AGAHAVKLEGG------------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKV-------QGRDEEAA 160 (264)
T ss_pred hCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeee-------ecCCHHHH
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV 297 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~ 297 (398)
+.+.+-++++.++||+.|.+.= .|. ++++.+.++++...|++
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE~-----v~~---~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLEC-----VPA---ELAKEITEALSIPTIGI 202 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCCCEEEe
No 427
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=87.21 E-value=21 Score=35.22 Aligned_cols=124 Identities=13% Similarity=0.033 Sum_probs=74.2
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ 256 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~ 256 (398)
+.|+.+|-...|.+--...+.++.|.-.-. ...+.+.+.++.+|+. +..+.+.+ .+.++ +++
T Consensus 140 k~Av~~GGg~~HR~gLsd~ilikdnHi~~~-g~~~~i~~av~~~r~~~~~~kIeVEv-----------~tlee----a~e 203 (277)
T TIGR01334 140 VKAVLAAGGVIHRIGLSETLLVFANHRTFL-NDNFDWGGAIGRLKQTAPERKITVEA-----------DTIEQ----ALT 203 (277)
T ss_pred HHHHHhCCCcCeecCCchhheehHHHHHHh-CCcccHHHHHHHHHHhCCCCCEEEEC-----------CCHHH----HHH
Confidence 467778876666543222333333211000 0001344566666665 33343211 13333 555
Q ss_pred HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
+.++|+|.|-|- -++|+++.+.++.+++..|...+++=+ |.-..|..+=...|+|+|-++-.
T Consensus 204 a~~~GaDiI~lD----n~~~e~l~~~v~~l~~~~~~~~leasG----GI~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 204 VLQASPDILQLD----KFTPQQLHHLHERLKFFDHIPTLAAAG----GINPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred HHHcCcCEEEEC----CCCHHHHHHHHHHHhccCCCEEEEEEC----CCCHHHHHHHHhcCCCEEEeCcc
Confidence 668999998776 589999999999998656666666654 55567777777899999866543
No 428
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=87.20 E-value=14 Score=36.65 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCEEEEecCC-C-CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC---------CH-hhHHHHHHcCCCE
Q 015894 124 LIKLLVSSGLAVVEATSFV-S-PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP---------NL-KGFEAAVAAGAKE 188 (398)
Q Consensus 124 ia~~L~~aGv~~IEvG~~~-~-~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------n~-~~ie~a~~~Gv~~ 188 (398)
=++...++|++.|=++++. + .-.+|. +-+.++++..++++.+ +.+.+++- |. +-++...++|+..
T Consensus 27 SAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence 3566788899999997641 1 122342 2466788888876542 33444432 11 2367778899999
Q ss_pred EEEeccCchHHHhh---h-cC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CCCCHHHHHHHHHHHHhCC
Q 015894 189 VAIFASASESFSKS---N-IN-CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 189 v~i~~~~Sd~~~~~---~-~~-~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r~~~~~l~~~a~~l~~~G 261 (398)
|+|-+.+.+-..-. + -. .+.++..++++.+.+. + .+..+. |..=. |. .....+..++=++...++|
T Consensus 107 i~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~--I~ART---Da~~~~~g~deAI~Ra~aY~eAG 179 (290)
T TIGR02321 107 IVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFV--VIARV---EALIAGLGQQEAVRRGQAYEEAG 179 (290)
T ss_pred EEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEE--EEEEe---ccccccCCHHHHHHHHHHHHHcC
Confidence 99988765432110 0 11 3677777777555443 2 333322 11101 11 1123466666788888999
Q ss_pred CCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEeeccccCCCCCCCCCCCCC
Q 015894 262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVDSSVSGLGGCPYAKGASGN 340 (398)
Q Consensus 262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD~Sv~GlGecp~a~graGN 340 (398)
||.|.+.= +.-+|+++..+++.+.. | +|+-+..=.+..+. ... .-++| +.+|-.....+ ++-.
T Consensus 180 AD~ifv~~--~~~~~~ei~~~~~~~~~--p-~pv~~~~~~~p~~~-~~~--l~~lg~~~~v~~g~~~~--------~aa~ 243 (290)
T TIGR02321 180 ADAILIHS--RQKTPDEILAFVKSWPG--K-VPLVLVPTAYPQLT-EAD--IAALSKVGIVIYGNHAI--------RAAV 243 (290)
T ss_pred CCEEEecC--CCCCHHHHHHHHHhcCC--C-CCeEEecCCCCCCC-HHH--HHHhcCCcEEEEChHHH--------HHHH
Confidence 99999842 34678888888776642 2 23433220111221 122 33456 56533222222 5556
Q ss_pred ccHHHHHHHHHhCC
Q 015894 341 VATEDVVYMLNGLG 354 (398)
Q Consensus 341 a~lE~vv~~L~~~G 354 (398)
.++++.+..+...|
T Consensus 244 ~a~~~~~~~i~~~g 257 (290)
T TIGR02321 244 GAVREVFARIRRDG 257 (290)
T ss_pred HHHHHHHHHHHHcC
Confidence 67777777776544
No 429
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.17 E-value=20 Score=37.33 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
.+-.+.++.|.++|+|.|-+-.-... -....+.++.++ +.|+..+.+ -+.+.++.+.+.++|+|.|.+-...-
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~-----~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH-----STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC-----ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 44678999999999998876321110 012334555555 356765433 45688899999999999998643211
Q ss_pred hHHH-hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894 197 ESFS-KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269 (398)
Q Consensus 197 d~~~-~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D 269 (398)
-++. +...+.... .+..+..+.+.+++.+++|- . +.+-.++..+.+ +.++||+.+.+.-
T Consensus 227 s~c~tr~~~g~g~p-~ltai~~v~~~~~~~~vpVI---A------dGGI~~~~Di~K----ALalGA~aVmvGs 286 (404)
T PRK06843 227 SICTTRIVAGVGVP-QITAICDVYEVCKNTNICII---A------DGGIRFSGDVVK----AIAAGADSVMIGN 286 (404)
T ss_pred cCCcceeecCCCCC-hHHHHHHHHHHHhhcCCeEE---E------eCCCCCHHHHHH----HHHcCCCEEEEcc
Confidence 0000 111122111 23344445566666676653 1 334345554333 3459999887654
No 430
>PLN02389 biotin synthase
Probab=87.17 E-value=13 Score=38.40 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
+++.+++.++.+.+.|+.+|++.
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~iv 139 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMG 139 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE
Confidence 45555555555555555555553
No 431
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.15 E-value=9.7 Score=36.17 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=5.5
Q ss_pred HHHHHHHhCCCc
Q 015894 217 DVALAARELSIP 228 (398)
Q Consensus 217 ~~v~~ak~~G~~ 228 (398)
++++...+.|+.
T Consensus 23 ~i~~~L~~~GV~ 34 (265)
T cd03174 23 EIAEALDEAGVD 34 (265)
T ss_pred HHHHHHHHcCCC
Confidence 334444455554
No 432
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.07 E-value=28 Score=33.91 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC------CCCcccCCCCHHHHHHHHHhcc-CCcEE-EEe--C-----C-Hhh-H--
Q 015894 118 AVVKVELIKLLVSSGLAVVEATSFV------SPKWVPQLADAKDVMAAIQNVE-GARFP-VLT--P-----N-LKG-F-- 178 (398)
Q Consensus 118 ~~~k~~ia~~L~~aGv~~IEvG~~~------~~~~~p~~~D~~~v~~~i~~~~-~~~l~-~l~--~-----n-~~~-i-- 178 (398)
+.--.--++.++++|++.|=+|... .|+.. .-+.++++..++.+. .+... +.+ + + .++ +
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~--~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTL--PVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCC--CcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence 3333456788899999999888432 13221 235677776666432 22222 112 2 2 222 2
Q ss_pred -HHHH-HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee------ec-CCCCCCCC--H
Q 015894 179 -EAAV-AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV------VG-CPVEGMVP--P 247 (398)
Q Consensus 179 -e~a~-~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~------fg-~~~~~r~~--~ 247 (398)
.+.. ++|++-|.+-.+ ..+.+.|+.+++.|++|.++|-.. +| .-..+|++ .
T Consensus 96 a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a 157 (254)
T cd06557 96 AARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEA 157 (254)
T ss_pred HHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHH
Confidence 2334 499999999754 134466777788898776443321 11 01123444 3
Q ss_pred HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p 291 (398)
+.+.+-++.+.++||+.|.+.= .|. ++++.+.++++
T Consensus 158 ~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~ 193 (254)
T cd06557 158 ERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence 5666778888899999999864 343 35666666654
No 433
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=87.05 E-value=26 Score=32.73 Aligned_cols=160 Identities=17% Similarity=0.076 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
.+-+++++.+.+.|++.+-+.-..... ...-.+.+ +.+.+.+..+.++.+ -+++.++++.+.+.|++.|.+-...
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~-~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~- 106 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLE-LIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA- 106 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHH-HHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH-
Confidence 356889999999999998886421100 00112233 333343333444433 4478999999999999987542221
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL----SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI- 271 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l----~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~- 271 (398)
+ +..+.+.++++..++. +.+...+ ....| +. ..+...+.++++.+.+.|++.|.+-|..
T Consensus 107 --l----------~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g--~~-~~~~~~~~e~~~~~~~~g~~~ii~~~~~~ 170 (233)
T PRK00748 107 --V----------KNPELVKEACKKFPGK-IVVGLDARDGKVATDG--WL-ETSGVTAEDLAKRFEDAGVKAIIYTDISR 170 (233)
T ss_pred --H----------hCHHHHHHHHHHhCCC-ceeeeeccCCEEEEcc--Ce-ecCCCCHHHHHHHHHhcCCCEEEEeeecC
Confidence 1 1112233333332221 2221110 00000 00 0112344567888889999976665443
Q ss_pred -CcCCHHHHHHHHHHHHhhCCCCeEEEEe
Q 015894 272 -GVGTPGTVIPMLEAVLDAVPVDKLAVHF 299 (398)
Q Consensus 272 -G~~~P~~v~~lv~~l~~~~p~~~l~~H~ 299 (398)
|...-. -.++++.+++..+ .|+-..+
T Consensus 171 ~g~~~G~-d~~~i~~l~~~~~-ipvia~G 197 (233)
T PRK00748 171 DGTLSGP-NVEATRELAAAVP-IPVIASG 197 (233)
T ss_pred cCCcCCC-CHHHHHHHHHhCC-CCEEEeC
Confidence 333321 2456677776655 4555543
No 434
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.02 E-value=24 Score=33.83 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=59.2
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee------eecCCCCC--CCC
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSK-SNINCTIEDSLIRYRDVALAARELSIPVRGYLSC------VVGCPVEG--MVP 246 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~-~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~------~fg~~~~~--r~~ 246 (398)
+.++.+.++|.+.|-+... +.+.. ....++. ..+.++.+.+++.|+.+.. ++. .++.++.. ...
T Consensus 20 e~~~~~~~~G~~~iEl~~~--~~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~~d~~~r~~~ 92 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVD--ESDERLARLDWSK----EERLSLVKAIYETGVRIPS-MCLSGHRRFPFGSRDPATRERA 92 (284)
T ss_pred HHHHHHHHcCCCeEEEecC--CcccccccccCCH----HHHHHHHHHHHHcCCCceE-EecccccCcCCCCCCHHHHHHH
Confidence 3567778888888777533 11110 0112232 2244556677788887753 111 01111100 001
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhC-----CCCeEEEEeCCcc
Q 015894 247 PSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAV-----PVDKLAVHFHDTY 303 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~-----p~~~l~~H~Hnd~ 303 (398)
.+++.+.++.+.++|++.|++..... ...+.....+++.+++.. -++.|.+|.|.+.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~ 157 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTP 157 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcc
Confidence 24455667777778888887752111 112233444444444321 2467777777543
No 435
>PRK02227 hypothetical protein; Provisional
Probab=87.02 E-value=4.7 Score=38.91 Aligned_cols=147 Identities=14% Similarity=0.059 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH-------Hh-ccCCcEEEEeC---------CH-hh
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI-------QN-VEGARFPVLTP---------NL-KG 177 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i-------~~-~~~~~l~~l~~---------n~-~~ 177 (398)
+.......-+.....+|+++|-+|.+... +.++.++.+ +. .++.++.+... .. .-
T Consensus 64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~-------~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l 136 (238)
T PRK02227 64 YKPGTISLAALGAAATGADYVKVGLYGGK-------TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSL 136 (238)
T ss_pred CCchHHHHHHHHHHhhCCCEEEEcCCCCC-------cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHH
Confidence 34466677778889999999999987432 122222222 21 23444443221 11 22
Q ss_pred HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
.+.+.++|.+.+.+ |...|..-+..---..+.+.++++.++++|+..- + ++-...+. +..+
T Consensus 137 ~~~a~~aGf~g~Ml-----DTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g--L--------AGSL~~~d----ip~L 197 (238)
T PRK02227 137 PAIAADAGFDGAML-----DTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSA--L--------AGSLKFED----IPAL 197 (238)
T ss_pred HHHHHHcCCCEEEE-----ecccCCCcchHhhCCHHHHHHHHHHHHHcccHhH--h--------cccCchhh----HHHH
Confidence 46778899998877 3333332222222235667889999999999753 2 22222333 3345
Q ss_pred HhCCCCEEE------Ec-cCcCcCCHHHHHHHHHHHHh
Q 015894 258 YDMGCSEIS------LG-DTIGVGTPGTVIPMLEAVLD 288 (398)
Q Consensus 258 ~~~Gad~I~------L~-DT~G~~~P~~v~~lv~~l~~ 288 (398)
...++|.+. -. |-.|.+.|+.|.++.+.+..
T Consensus 198 ~~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~~ 235 (238)
T PRK02227 198 KRLGPDILGVRGAVCGGGDRTGRIDPELVAELREALRA 235 (238)
T ss_pred HhcCCCEEEechhccCCCCcccccCHHHHHHHHHHhhc
Confidence 667777653 23 47899999999998887764
No 436
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=86.97 E-value=5.6 Score=38.99 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894 243 GMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM 316 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a 316 (398)
+..|.+-+.++++.+.+. |++.|.++-|+|-. +.++-.++++...+... .+++-++. +++.--++..+..|.++
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 578899999999999999 99999999999854 55666777777776654 35777777 78888899999999999
Q ss_pred CCCEEee
Q 015894 317 GISTVDS 323 (398)
Q Consensus 317 Ga~~VD~ 323 (398)
||+.|=.
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9997754
No 437
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=86.96 E-value=19 Score=40.38 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=81.3
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~ 245 (398)
++|.++|.|.|.|... +|+. ..+..+|-+.++-+..+.++++.+|+. | +.|.+-++.. + ...+-.
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~-~-~~~~g~ 635 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH-D-WVEGGN 635 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc-c-ccCCCC
Confidence 3567799999988654 2443 344556678887788888888888875 3 4455445531 1 011235
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEccCcCcCC--------HHHHHHHHHHHHhhCCCCeEEEE-eCCccchHHHHHHHHHHh
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT--------PGTVIPMLEAVLDAVPVDKLAVH-FHDTYGQALSNILASLQM 316 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~--------P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~GlA~ANalaAl~a 316 (398)
+++...++++.+.+.|+|.|.+. .|... |.....+.+.+|+.+. +|+..- ..++ ...+..+++.
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~G~i~~----~~~a~~~l~~ 708 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAVGAISE----ADHVNSIIAA 708 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcC-CEEEEeCCCCC----HHHHHHHHHc
Confidence 67888999999999999999884 12111 1112345667777664 344333 3333 2445566666
Q ss_pred C-CCEE
Q 015894 317 G-ISTV 321 (398)
Q Consensus 317 G-a~~V 321 (398)
| +|.|
T Consensus 709 g~~D~v 714 (765)
T PRK08255 709 GRADLC 714 (765)
T ss_pred CCccee
Confidence 6 5554
No 438
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=86.77 E-value=9.5 Score=38.90 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCc-CC---HHH---------
Q 015894 213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGV-GT---PGT--------- 278 (398)
Q Consensus 213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~-~~---P~~--------- 278 (398)
+.+.++.+.|++.|+-|-+ +. -.+.+.+..+++.+.+..... |.+....-- +. -..
T Consensus 7 ~~~k~~L~~A~~~~yAV~A-fN---------v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~ 76 (350)
T PRK09197 7 EDYQEMFDRAKENGFALPA-VN---------VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLG 76 (350)
T ss_pred HHHHHHHHHHHHCCceEEE-EE---------eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhh
Confidence 3466788999999997742 22 146789999999999998774 555443111 11 122
Q ss_pred ---HHHHHHHHHhhCCCCeEEEEeCCccchH--HHHHHHHHHhC-----------CC--EEeeccccCCCCCCCCCCCCC
Q 015894 279 ---VIPMLEAVLDAVPVDKLAVHFHDTYGQA--LSNILASLQMG-----------IS--TVDSSVSGLGGCPYAKGASGN 340 (398)
Q Consensus 279 ---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA--~ANalaAl~aG-----------a~--~VD~Sv~GlGecp~a~graGN 340 (398)
+..++..+.++.. +|+.+|. |.|.- +..+..|+++| .+ ++|+|-..+-+ |
T Consensus 77 ~~~~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEe---------N 144 (350)
T PRK09197 77 AIAGAKHVHEVAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEE---------N 144 (350)
T ss_pred HHHHHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHH---------H
Confidence 6677777777774 4677655 55544 55666666665 66 67988877776 6
Q ss_pred c-cHHHHHHHHHhCC
Q 015894 341 V-ATEDVVYMLNGLG 354 (398)
Q Consensus 341 a-~lE~vv~~L~~~G 354 (398)
+ -|.+++.+.+..|
T Consensus 145 I~~TkevVe~Ah~~G 159 (350)
T PRK09197 145 IEICSKYLERMAKAG 159 (350)
T ss_pred HHHHHHHHHHHHHcC
Confidence 5 5667777776443
No 439
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=86.71 E-value=15 Score=35.54 Aligned_cols=171 Identities=17% Similarity=0.250 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccCCcEEEE-----eCCHhh-H---HHHHHc-CCCEEEE
Q 015894 123 ELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEGARFPVL-----TPNLKG-F---EAAVAA-GAKEVAI 191 (398)
Q Consensus 123 ~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~~~l~~l-----~~n~~~-i---e~a~~~-Gv~~v~i 191 (398)
.+.+.+..+|.+.+-+..-- ..... .+.+.+++. ++..++..| |++.++ + +.+.+. |.+.|.+
T Consensus 23 ~m~~ai~aSg~evvTvalRR~~~~~~---~~~~~~~~~---i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKL 96 (247)
T PF05690_consen 23 VMREAIEASGAEVVTVALRRVNLGSK---PGGDNILDY---IDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKL 96 (247)
T ss_dssp HHHHHHHHTT-SEEEEECCGSTTTS----TTCHHCCCC---TTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE
T ss_pred HHHHHHHHhCCcEEEEEEecccCCCC---CCCccHHHH---hcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45678899999999887521 11100 011222222 222222222 344332 3 445564 6789998
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccC
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDT 270 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT 270 (398)
-+--.+..+.- +.++.+ ++.+...+.|+.|-+|.+ + |+ -+++++.++||..+ -++--
T Consensus 97 EVi~D~~~L~P-------D~~etl-~Aae~Lv~eGF~VlPY~~-----~-----D~----v~akrL~d~GcaavMPlgsP 154 (247)
T PF05690_consen 97 EVIGDDKTLLP-------DPIETL-KAAEILVKEGFVVLPYCT-----D-----DP----VLAKRLEDAGCAAVMPLGSP 154 (247)
T ss_dssp --BS-TTT--B--------HHHHH-HHHHHHHHTT-EEEEEE------S------H----HHHHHHHHTT-SEBEEBSSS
T ss_pred EEeCCCCCcCC-------ChhHHH-HHHHHHHHCCCEEeecCC-----C-----CH----HHHHHHHHCCCCEEEecccc
Confidence 76655543222 333333 233444467999987765 1 23 47899999999875 44555
Q ss_pred cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCE--Eeeccc
Q 015894 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGIST--VDSSVS 326 (398)
Q Consensus 271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~--VD~Sv~ 326 (398)
+|...-..-...++.++++++ +|+-+ |-|++. +-+-.|++.|++- |+++|.
T Consensus 155 IGSg~Gi~n~~~l~~i~~~~~-vPvIv----DAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 155 IGSGRGIQNPYNLRIIIERAD-VPVIV----DAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp TTT---SSTHHHHHHHHHHGS-SSBEE----ES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred cccCcCCCCHHHHHHHHHhcC-CcEEE----eCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 544433333344555555552 45555 568774 4577899999995 477776
No 440
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=86.68 E-value=36 Score=33.92 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCC-CEEEEecCCCCCcccCCCCHHHH---HHHHHhccCCcEE----EEeCCH-hhHHHHHHcCCCEEEEe
Q 015894 122 VELIKLLVSSGL-AVVEATSFVSPKWVPQLADAKDV---MAAIQNVEGARFP----VLTPNL-KGFEAAVAAGAKEVAIF 192 (398)
Q Consensus 122 ~~ia~~L~~aGv-~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~~~~~~l~----~l~~n~-~~ie~a~~~Gv~~v~i~ 192 (398)
-+++-+..++|. -.|-.++. .++++ ++.++...+..+. .+.+.. +.++.+++.|++.|.+.
T Consensus 25 ~~la~avs~aGglG~l~~~~~----------~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~ 94 (307)
T TIGR03151 25 GSLAAAVSNAGGLGIIGAGNA----------PPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG 94 (307)
T ss_pred HHHHHHHHhCCCcceeccccC----------CHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc
Confidence 467777777763 33333221 22333 4444443332222 223443 34677889999988763
Q ss_pred ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cC
Q 015894 193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--DT 270 (398)
Q Consensus 193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT 270 (398)
... + .+.++..|+.|..|.+.+. +. +.++.+.++|+|.|.+- +.
T Consensus 95 ~g~------------p-------~~~i~~lk~~g~~v~~~v~-----------s~----~~a~~a~~~GaD~Ivv~g~ea 140 (307)
T TIGR03151 95 AGN------------P-------GKYIPRLKENGVKVIPVVA-----------SV----ALAKRMEKAGADAVIAEGMES 140 (307)
T ss_pred CCC------------c-------HHHHHHHHHcCCEEEEEcC-----------CH----HHHHHHHHcCCCEEEEECccc
Confidence 221 1 1356777888987653221 23 34677888999998762 33
Q ss_pred cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCC
Q 015894 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPY 333 (398)
Q Consensus 271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~ 333 (398)
-|...+.....++..+++.++ +||-.-+.-..+-. +.+|+..||+.| -+.+..--||+.
T Consensus 141 gGh~g~~~~~~ll~~v~~~~~-iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~t~Es~~ 201 (307)
T TIGR03151 141 GGHIGELTTMALVPQVVDAVS-IPVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLCAKECNV 201 (307)
T ss_pred CCCCCCCcHHHHHHHHHHHhC-CCEEEECCCCCHHH---HHHHHHcCCCEeecchHHhcccccCC
Confidence 343222334677788887764 46666655444444 445556799855 444555556543
No 441
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.67 E-value=14 Score=36.55 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=50.8
Q ss_pred eC-CHhhHH----HHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCC
Q 015894 172 TP-NLKGFE----AAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEG 243 (398)
Q Consensus 172 ~~-n~~~ie----~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~ 243 (398)
.. +.+++. .+.+.|++.|.+ .++... .+.+.+....+..+.+.++++.+|+. .++|.+=+. |
T Consensus 108 G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~--~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~--- 177 (299)
T cd02940 108 CEYNKEDWTELAKLVEEAGADALELNFSCPHGM--PERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P--- 177 (299)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC--CCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C---
Confidence 44 555543 334468887766 333221 11222222222234455666666653 566654332 2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~ 273 (398)
+.+.+.++++.+.+.|++.|.+.+|...
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 178 --NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred --CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 2346788899999999999998777643
No 442
>PTZ00300 pyruvate kinase; Provisional
Probab=86.66 E-value=47 Score=35.19 Aligned_cols=200 Identities=13% Similarity=0.069 Sum_probs=113.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhHHHHH--HcCCCEEEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGFEAAV--AAGAKEVAI 191 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~ie~a~--~~Gv~~v~i 191 (398)
.++..++..| +...+.|++.|=+.|--++ .|..++.+.+... .++.+.+-.-+.++++..- -.++|.|.|
T Consensus 144 ~ltekD~~dI-~~ald~gvd~I~~SfVrsa------eDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImV 216 (454)
T PTZ00300 144 AVSAKDCADL-QFGVEQGVDMIFASFIRSA------EQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMV 216 (454)
T ss_pred CCChhhHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEE
Confidence 4666666665 4556789999887653322 3444555555422 2344444445555554332 267887766
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-c
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-D 269 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-D 269 (398)
.= -|. ......++.....+.+++.|+++|..+-+ +=+.. +.-...+.+..++-+++..+. -|+|.+-|. -
T Consensus 217 aR--GDL----gvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLe-SM~~~p~PTRAEvsDVanAv~-dG~DavMLS~E 288 (454)
T PTZ00300 217 AR--GDL----GVEIPAEKVVVAQKILISKCNVAGKPVICATQMLE-SMTYNPRPTRAEVSDVANAVF-NGADCVMLSGE 288 (454)
T ss_pred ec--chh----hhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHH-HHhhCCCCCchhHHHHHHHHH-hCCcEEEEech
Confidence 42 233 22234566666778899999999998742 11111 011112344566666665443 699999884 4
Q ss_pred CcCcCCHHHHHHHHHHHHhhCCC-C----eEEE---EeCC----ccchHHHHHHHHHHhCCC-EEeeccccCC
Q 015894 270 TIGVGTPGTVIPMLEAVLDAVPV-D----KLAV---HFHD----TYGQALSNILASLQMGIS-TVDSSVSGLG 329 (398)
Q Consensus 270 T~G~~~P~~v~~lv~~l~~~~p~-~----~l~~---H~Hn----d~GlA~ANalaAl~aGa~-~VD~Sv~GlG 329 (398)
|+=.-.|.+..++++.+....-. . .+.. +... ...+|.+...+|...+++ +|=.|-.|--
T Consensus 289 TA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~t 361 (454)
T PTZ00300 289 TAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRS 361 (454)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHH
Confidence 66666788877777777643210 0 0000 0011 235666777778889997 5566666653
No 443
>PRK15108 biotin synthase; Provisional
Probab=86.55 E-value=6.8 Score=39.70 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHH
Q 015894 206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEA 285 (398)
Q Consensus 206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~ 285 (398)
++.++.++ .++.+++.|+.- ++...+.......+.+++.++++.+.+.|+. ++-|.|.++++.+.++.++
T Consensus 76 ls~eEI~~----~a~~~~~~G~~~---i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeA 145 (345)
T PRK15108 76 MEVEQVLE----SARKAKAAGSTR---FCMGAAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANA 145 (345)
T ss_pred CCHHHHHH----HHHHHHHcCCCE---EEEEecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHc
Confidence 34555544 445666788753 2221221111224568999999988887753 4468999998777776554
Q ss_pred -HHh------hCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 286 -VLD------AVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 286 -l~~------~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+.. ..|..-=.+|.+.++.--+.....|.++|...--+-+.|+||
T Consensus 146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE 197 (345)
T PRK15108 146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE 197 (345)
T ss_pred CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence 320 012110124566678888888888999999766677999998
No 444
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=86.43 E-value=11 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
..+.++.+.++|++.|.+-=+.| .+..+.++++.+++.+|.+++.+ +|- .....+..++++||+.|-+.+.
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence 45667788889999877633333 55788899999999988666665 222 3446678888999999987543
No 445
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=86.42 E-value=6.4 Score=39.45 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEccCcC-cCCHHHHHHHHHHHHhhCCCCeEEEEe---------CCccchHHHHHHHH
Q 015894 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIG-VGTPGTVIPMLEAVLDAVPVDKLAVHF---------HDTYGQALSNILAS 313 (398)
Q Consensus 244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p~~~l~~H~---------Hnd~GlA~ANalaA 313 (398)
..+++.+.+.++.+.+.|+++|+|.+-.. ...+..+.++++.++++.|. +.+|. -...|+-+.-.+..
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~--i~~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH--IHIHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--cCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 46889999999999999999999953211 23445677899999988764 34442 11335544455555
Q ss_pred H-HhCCCEEe
Q 015894 314 L-QMGISTVD 322 (398)
Q Consensus 314 l-~aGa~~VD 322 (398)
+ +||++.++
T Consensus 149 Lk~aG~~~~~ 158 (340)
T TIGR03699 149 LKEAGLDSIP 158 (340)
T ss_pred HHHcCCCcCC
Confidence 5 58999776
No 446
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=86.38 E-value=6.9 Score=41.81 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894 247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326 (398)
Q Consensus 247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~ 326 (398)
.+.+.+.++.+.+.|||.|-|.=-.+.-.|..+...|+.+++... .+|.+-+.|- .-+.+|+++|+++|+ ++.
T Consensus 164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~~-----~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPTL-----DELYEALKAGASGVI-MPD 236 (499)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCCH-----HHHHHHHHcCCCEEE-ECC
Confidence 377888899999999999999854444455679999999998753 5788866653 566788999999998 555
Q ss_pred c
Q 015894 327 G 327 (398)
Q Consensus 327 G 327 (398)
|
T Consensus 237 ~ 237 (499)
T TIGR00284 237 V 237 (499)
T ss_pred c
Confidence 5
No 447
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=86.38 E-value=29 Score=32.50 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
.+-+++++.+.+.|++.+=+--...-. -....+. ++++.+.+..+..+. .-.++.++++.+.++|++.|-+-..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~-~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~-- 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAK-EGGPVNL-PVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA-- 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccc-cCCCCcH-HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH--
Confidence 356789999999999876662111000 0011122 344444433333333 3447889999999999998754211
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC--CCCCC-CCHHHHHHHHHHHHhCCCCEEEEccCc-
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGC--PVEGM-VPPSKVAYVSKQLYDMGCSEISLGDTI- 271 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~--~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~DT~- 271 (398)
.++....+.+.+++.|. .+.+.+-.--|. ....+ .+.....++++.+.+.|++.|.+-|-.
T Consensus 104 --------------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~ 169 (230)
T TIGR00007 104 --------------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISR 169 (230)
T ss_pred --------------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecC
Confidence 11222233455566663 233222210000 00011 112344567888899999987765543
Q ss_pred -CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 272 -GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 272 -G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
|...... .++++.+++..+ +|+..-+=-..- .-...+.+.||+.|
T Consensus 170 ~g~~~g~~-~~~i~~i~~~~~-ipvia~GGi~~~---~di~~~~~~Gadgv 215 (230)
T TIGR00007 170 DGTLSGPN-FELTKELVKAVN-VPVIASGGVSSI---DDLIALKKLGVYGV 215 (230)
T ss_pred CCCcCCCC-HHHHHHHHHhCC-CCEEEeCCCCCH---HHHHHHHHCCCCEE
Confidence 3333322 556667766543 455554321111 22223345787754
No 448
>PRK08185 hypothetical protein; Provisional
Probab=86.22 E-value=9.1 Score=37.92 Aligned_cols=102 Identities=11% Similarity=0.165 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCCe
Q 015894 216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVDK 294 (398)
Q Consensus 216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~ 294 (398)
+++.+.|++.++-|-. +. -++.+.+..+++.+.+.+... |.+.-..--..|..+..++..+.++.. +|
T Consensus 2 ~~~L~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP 70 (283)
T PRK08185 2 KELLKVAKEHQFAVGA-FN---------VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP 70 (283)
T ss_pred HHHHHHHHHcCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence 4667889999987742 22 146788999999999999875 444433322234557778877777764 46
Q ss_pred EEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894 295 LAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG 330 (398)
Q Consensus 295 l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe 330 (398)
+.+| =|.|.-+.....|+++|.+ ++|.|-..+-+
T Consensus 71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~ee 106 (283)
T PRK08185 71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLLPYEE 106 (283)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence 6655 5777788899999999987 66888776655
No 449
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=86.18 E-value=22 Score=36.39 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhh-CC
Q 015894 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDA-VP 291 (398)
Q Consensus 214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p 291 (398)
.+.+.++.+++.|+.. +.++ |.+-.-+ ..+.++++.+.+. |...+.+ .|.|.+.+..+.+ +++. +.
T Consensus 94 ei~~~i~~~~~~Gv~~-I~~t---GGEPllr---~dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~~----L~~aGld 161 (373)
T PLN02951 94 EIVRLAGLFVAAGVDK-IRLT---GGEPTLR---KDIEDICLQLSSLKGLKTLAM-TTNGITLSRKLPR----LKEAGLT 161 (373)
T ss_pred HHHHHHHHHHHCCCCE-EEEE---CCCCcch---hhHHHHHHHHHhcCCCceEEE-eeCcchHHHHHHH----HHhCCCC
Confidence 3344556666778743 1232 3222212 2366677767665 7665665 6889887765443 3332 22
Q ss_pred CCeEEEEeC-----------CccchHHHHHHHHHHhCCCE--EeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCC
Q 015894 292 VDKLAVHFH-----------DTYGQALSNILASLQMGIST--VDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGV 355 (398)
Q Consensus 292 ~~~l~~H~H-----------nd~GlA~ANalaAl~aGa~~--VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi 355 (398)
.+.|.++.. .++...+.+.-+|.++|... |++++.- |. | -.+++++..+++.|+
T Consensus 162 ~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~---------N~~Ei~~li~~a~~~gi 229 (373)
T PLN02951 162 SLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF---------NDDEICDFVELTRDKPI 229 (373)
T ss_pred eEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC---------CHHHHHHHHHHHHhCCC
Confidence 344555542 12334566666667788643 4444331 22 2 246667666666664
No 450
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=86.17 E-value=43 Score=34.30 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEe---CCHhhHHHHHHcCCCEEE
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLT---PNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~---~n~~~ie~a~~~Gv~~v~ 190 (398)
.+.+..++-+..|.++|.+.+-+..+. +.+++.+.+..+++ .++.+...+ .+.+=.-.|++. ++.||
T Consensus 28 ~Dv~atv~QI~~L~~aGceivRvavp~-------~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~-v~kiR 99 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCEIVRVAVPD-------MEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEA-VDKIR 99 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEEE-S-------HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC--SEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHH-hCeEE
Confidence 456667888899999999999998753 23444333333331 233333333 243333345667 99999
Q ss_pred EeccCchHHHhhhcC-------CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC---C--CCHH----HHHHHH
Q 015894 191 IFASASESFSKSNIN-------CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG---M--VPPS----KVAYVS 254 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~-------~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~---r--~~~~----~l~~~a 254 (398)
|=-. |+. .++ -++++++++.||++|+.++..+. .|+-... + .+++ -..+.+
T Consensus 100 INPG--------Ni~~~~~~~~g~~---~~~~~~vv~~ake~~ipIRIGvN--~GSL~~~~~~ky~~t~~amvesA~~~~ 166 (359)
T PF04551_consen 100 INPG--------NIVDEFQEELGSI---REKVKEVVEAAKERGIPIRIGVN--SGSLEKDILEKYGPTPEAMVESALEHV 166 (359)
T ss_dssp E-TT--------TSS----SS-SS----HHHHHHHHHHHHHHT-EEEEEEE--GGGS-HHHHHHHCHHHHHHHHHHHHHH
T ss_pred ECCC--------cccccccccccch---HHHHHHHHHHHHHCCCCEEEecc--cccCcHHHHhhccchHHHHHHHHHHHH
Confidence 8322 331 122 35567889999999999997776 3432110 0 1112 222356
Q ss_pred HHHHhCCCC--EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHH------HhCC-CEEeec
Q 015894 255 KQLYDMGCS--EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASL------QMGI-STVDSS 324 (398)
Q Consensus 255 ~~l~~~Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl------~aGa-~~VD~S 324 (398)
+.+.++|.+ .|+++.+ .+..+.+..+.+.+.++ -||++..-. -|.. -...-.|+ .-|+ |.|-+|
T Consensus 167 ~~le~~~f~~iviSlKsS----dv~~~i~ayr~la~~~d-yPLHLGvTE-AG~~~~g~IkSsigiG~LL~~GIGDTIRVS 240 (359)
T PF04551_consen 167 RILEELGFDDIVISLKSS----DVPETIEAYRLLAERMD-YPLHLGVTE-AGTGEDGTIKSSIGIGALLLDGIGDTIRVS 240 (359)
T ss_dssp HHHHHCT-GGEEEEEEBS----SHHHHHHHHHHHHHH---S-EEEEBSS-EESCHHHHHHHHHHHHHHHHTT--SEEEE-
T ss_pred HHHHHCCCCcEEEEEEeC----ChHHHHHHHHHHHHhcC-CCeEEeecC-CCCcccchhHHHHHHHHHHHcCCCCEEEEE
Confidence 667778987 4677776 44444444444444443 245443322 2221 22222333 3454 677777
Q ss_pred ccc
Q 015894 325 VSG 327 (398)
Q Consensus 325 v~G 327 (398)
+.+
T Consensus 241 Lt~ 243 (359)
T PF04551_consen 241 LTG 243 (359)
T ss_dssp ECS
T ss_pred CCC
Confidence 763
No 451
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=86.15 E-value=76 Score=37.68 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC------CcEEEEeC-CHhh--------------HHH
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG------ARFPVLTP-NLKG--------------FEA 180 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~------~~l~~l~~-n~~~--------------ie~ 180 (398)
.+.++.|.+.|+|.|=+-. +.|..+...++..+.. ..+.+++. ...+ +..
T Consensus 151 ~eq~~~L~~~GvD~iliET---------i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~ 221 (1178)
T TIGR02082 151 TEQAKGLLDGGVDLLLIET---------CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTS 221 (1178)
T ss_pred HHHHHHHHhCCCCEEEEec---------cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHH
Q ss_pred HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCC---CCCCCHHHHHHHHHH
Q 015894 181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQ 256 (398)
Q Consensus 181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~ 256 (398)
....+++.|.+=++..+ +.+...++...+. ...+.++=. -|-|. ....+|+++.+.++.
T Consensus 222 l~~~~~~avGlNCs~gP---------------~~m~~~l~~l~~~~~~pi~vyPN--AGlP~~~~~yd~~p~~~a~~~~~ 284 (1178)
T TIGR02082 222 LEHAGIDMIGLNCALGP---------------DEMRPHLKHLSEHAEAYVSCHPN--AGLPNAFGEYDLTPDELAKALAD 284 (1178)
T ss_pred HhcCCCCEEEeCCCCCH---------------HHHHHHHHHHHHhcCceEEEEeC--CCCCCCCCcccCCHHHHHHHHHH
Q ss_pred HHhC-CCCEEE-EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC----------------------------------
Q 015894 257 LYDM-GCSEIS-LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH---------------------------------- 300 (398)
Q Consensus 257 l~~~-Gad~I~-L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H---------------------------------- 300 (398)
+.+. |+..|. -|=| +|++++.+-++++..-|..+...+.+
T Consensus 285 ~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~ 360 (1178)
T TIGR02082 285 FAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRR 360 (1178)
T ss_pred HHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHH
Q ss_pred ----CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC----CCCCccChHHHHHHHHHHH
Q 015894 301 ----DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL----GVRTNVDIRKLMIAGDFIC 372 (398)
Q Consensus 301 ----nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~t~iDl~~L~~~~~~v~ 372 (398)
.|+.-++.-+..-+++||++||+.. |... ..+-..++.++..+... .+..-||..+-.-+..-++
T Consensus 361 ~i~~~d~~~a~~~A~~qve~GA~iIDVn~-~~~~------vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk 433 (1178)
T TIGR02082 361 LIIAEDYDEALDIAKQQVENGAQILDINV-DYGM------LDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLK 433 (1178)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHH
Q ss_pred HHhCCCC
Q 015894 373 KHLGRTS 379 (398)
Q Consensus 373 ~~~g~~~ 379 (398)
.+-|.++
T Consensus 434 ~~~G~~I 440 (1178)
T TIGR02082 434 CIQGKCI 440 (1178)
T ss_pred hcCCCCE
No 452
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=86.14 E-value=33 Score=33.42 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=70.7
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL 257 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l 257 (398)
+..++.|++.|.|-..+ +.++-.+++..+++.+++. +..+. + |. ++++ +++.+
T Consensus 32 ~~~~~~GAdiIDVg~~~-----------~~~eE~~r~~~~v~~l~~~~~~pls------I---DT--~~~~----v~eaa 85 (261)
T PRK07535 32 LKQAEAGADYLDVNAGT-----------AVEEEPETMEWLVETVQEVVDVPLC------I---DS--PNPA----AIEAG 85 (261)
T ss_pred HHHHHCCCCEEEECCCC-----------CchhHHHHHHHHHHHHHHhCCCCEE------E---eC--CCHH----HHHHH
Confidence 34467899999996553 3345678888888888764 55543 2 22 2343 34444
Q ss_pred HhC--CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCc---------cchHHHHHHHHHHhCCC----EEe
Q 015894 258 YDM--GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDT---------YGQALSNILASLQMGIS----TVD 322 (398)
Q Consensus 258 ~~~--Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd---------~GlA~ANalaAl~aGa~----~VD 322 (398)
.++ |++.| -|..|.. .....++..+++ +...-+..|.|+. ........-.|.++|+. ++|
T Consensus 86 L~~~~G~~iI--NsIs~~~--~~~~~~~~l~~~-~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD 160 (261)
T PRK07535 86 LKVAKGPPLI--NSVSAEG--EKLEVVLPLVKK-YNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID 160 (261)
T ss_pred HHhCCCCCEE--EeCCCCC--ccCHHHHHHHHH-hCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence 444 88864 4555543 112233443433 3322467788754 22333344557789995 789
Q ss_pred eccccCCC
Q 015894 323 SSVSGLGG 330 (398)
Q Consensus 323 ~Sv~GlGe 330 (398)
..+..+|.
T Consensus 161 Pgi~~~~~ 168 (261)
T PRK07535 161 PLVLPLSA 168 (261)
T ss_pred CCCCcccC
Confidence 98886664
No 453
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=86.13 E-value=7 Score=37.36 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc--CCcEEEEeCCHhhHHHH--HHc-CCC--EEEEec
Q 015894 121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE--GARFPVLTPNLKGFEAA--VAA-GAK--EVAIFA 193 (398)
Q Consensus 121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~n~~~ie~a--~~~-Gv~--~v~i~~ 193 (398)
--++++.|..+|++.+-++--..-++. .+-+.+.++.+. ++...+..++..+..+. ++. |++ .+....
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G-----~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~ 138 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYG-----EEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTD 138 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCcccc-----HHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEc
Confidence 346699999999999988743222221 233444444332 44455544554433221 122 222 122222
Q ss_pred cCchHHHhhhcC-------------CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 194 SASESFSKSNIN-------------CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 194 ~~Sd~~~~~~~~-------------~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
..+......... ......++.+.+.|+.+|+ +-.+.+ ++.=||.+.. ..+.++..++++.+.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~-~~D~vI-v~~HwG~e~~-~~p~~~q~~~a~~lida 215 (250)
T PF09587_consen 139 GENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARK-KADVVI-VSLHWGIEYE-NYPTPEQRELARALIDA 215 (250)
T ss_pred CCCCCccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCEEE-EEeccCCCCC-CCCCHHHHHHHHHHHHc
Confidence 221111111000 0011224667777888884 344432 3333666654 34567888899999999
Q ss_pred CCCEE
Q 015894 261 GCSEI 265 (398)
Q Consensus 261 Gad~I 265 (398)
|||.|
T Consensus 216 GaDiI 220 (250)
T PF09587_consen 216 GADII 220 (250)
T ss_pred CCCEE
Confidence 99876
No 454
>PLN02433 uroporphyrinogen decarboxylase
Probab=86.04 E-value=5.2 Score=40.31 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcc-CcCcCCHHHHHHHHH--------HHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 248 SKVAYVSKQLYDMGCSEISLGD-TIGVGTPGTVIPMLE--------AVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~lv~--------~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
+.+.++++...++|++.+.+.| +.|.++|.+..+++. .+++..|+.++.+|.+.+. ...-.-.+.|+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~ 254 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV 254 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC
Q ss_pred CEEee
Q 015894 319 STVDS 323 (398)
Q Consensus 319 ~~VD~ 323 (398)
+.+..
T Consensus 255 ~~i~~ 259 (345)
T PLN02433 255 DVIGL 259 (345)
T ss_pred CEEEc
No 455
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=86.04 E-value=11 Score=40.65 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=82.7
Q ss_pred HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894 182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261 (398)
Q Consensus 182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G 261 (398)
...|.|++..++-..+. ..+++++-+.+....+.+++.--...-.-...| .+..|-+.++--.+-++.+.++|
T Consensus 8 ~~iGsDI~~~LD~~t~~------~~~~~~a~~sverT~rwa~~~~~~~~~~~~~l~-giVQGG~~~DLR~~Sa~~l~~~~ 80 (540)
T TIGR00432 8 RHIGSDIGTPLDIPTPP------DVDYARAESELEITLERARESIELLEGAENLLN-VPVQGSTHPDLRRFAAGEAAKLG 80 (540)
T ss_pred HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcccCcEE-EEEcCCCCHHHHHHHHHHHHhCC
Confidence 34677877776543322 234445555555555444332100000001112 23445567888888899999999
Q ss_pred CCEEEEccCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeecc
Q 015894 262 CSEISLGDTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSV 325 (398)
Q Consensus 262 ad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv 325 (398)
.+.+.|.-.+..+. +.++.+++..++..+| +.|+++. |.| ..+.+.++..|+|.+|++.
T Consensus 81 f~gyaIGG~v~~~e~y~~~~l~~iv~~~~~~LP~dkPryL~-----GvG~P~~i~~~V~lGvDlFD~v~ 144 (540)
T TIGR00432 81 GDIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPIHLF-----GCGHPMLFALAVALGCDLFDSAA 144 (540)
T ss_pred CCEEEEcCcChHhhhccHHHHHHHHHHHHhhCCCCcceeec-----CCCCHHHHHHHHHhCCCcccccH
Confidence 99999887664443 4568888888888887 5566554 444 5688889999999999883
No 456
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.97 E-value=37 Score=33.35 Aligned_cols=177 Identities=12% Similarity=0.092 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhcC----CCEEEEecCC-----CCCcccCCC--CHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894 117 PAVVKVELIKLLVSSG----LAVVEATSFV-----SPKWVPQLA--DAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG 185 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aG----v~~IEvG~~~-----~~~~~p~~~--D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G 185 (398)
+.++..++++.|.++| +..+==++|- +|...-.+. +-=++++.+++-.+..+..=+.+..+++.+.+.
T Consensus 22 s~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~- 100 (264)
T PRK05198 22 SRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV- 100 (264)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-
Confidence 6788899999999854 5544444442 222111111 122334444433455444444577888888887
Q ss_pred CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265 (398)
Q Consensus 186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I 265 (398)
+|.+.|-.-.. ++ -++++.+.+.|..|- |- ..--.++++++..++.+.+.|-+.|
T Consensus 101 ~DilQIgArn~----------------rn-~~LL~a~g~t~kpV~--lK------rG~~~t~~e~~~aaeyi~~~Gn~~v 155 (264)
T PRK05198 101 VDVLQIPAFLC----------------RQ-TDLLVAAAKTGKVVN--IK------KGQFLAPWDMKNVVDKVREAGNDKI 155 (264)
T ss_pred CcEEEECchhc----------------ch-HHHHHHHhccCCeEE--ec------CCCcCCHHHHHHHHHHHHHcCCCeE
Confidence 89999853211 11 144555556677764 11 1112578999999999999999999
Q ss_pred EEccC---cCcCCH-HHHHHHHHHHHhhCCCCeEEE---Ee-----------CCccchHHHHHHHHHHhCCCEEe
Q 015894 266 SLGDT---IGVGTP-GTVIPMLEAVLDAVPVDKLAV---HF-----------HDTYGQALSNILASLQMGISTVD 322 (398)
Q Consensus 266 ~L~DT---~G~~~P-~~v~~lv~~l~~~~p~~~l~~---H~-----------Hnd~GlA~ANalaAl~aGa~~VD 322 (398)
.||.= +|+-.- .+++. +..+++ .. .|+-+ |. =-++-+...-+.||+.+||+.+=
T Consensus 156 ilcERG~tf~y~r~~~D~~~-vp~~k~-~~-lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~ 227 (264)
T PRK05198 156 ILCERGTSFGYNNLVVDMRG-LPIMRE-TG-APVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLF 227 (264)
T ss_pred EEEeCCCCcCCCCeeechhh-hHHHhh-CC-CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 88873 322211 11211 223332 22 34555 44 33556788999999999999553
No 457
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=85.91 E-value=33 Score=32.81 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=81.2
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhc-CCCHHHHH------HHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNI-NCTIEDSL------IRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPS 248 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~-~~s~~~~l------~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~ 248 (398)
.++...+.|+|.+++=++.||....-.+ ......+| +..-+.++..|+. .+++ .+|.-+ +|.- .
T Consensus 19 ~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv--~lm~y~-n~~~-----~ 90 (242)
T cd04724 19 ILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI--VLMGYY-NPIL-----Q 90 (242)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE--EEEEec-CHHH-----H
Confidence 3556677899999998777765322100 00011122 2445666776654 4443 243211 1110 1
Q ss_pred H-HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe-eccc
Q 015894 249 K-VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD-SSVS 326 (398)
Q Consensus 249 ~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD-~Sv~ 326 (398)
+ +.++++.+.++|++.+.++|- .|++..++++.++++-.. ..+=+=.+.-......+ +....+.|- .|+.
T Consensus 91 ~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~~--~i~~i~P~T~~~~i~~i--~~~~~~~vy~~s~~ 162 (242)
T cd04724 91 YGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGLD--LIFLVAPTTPDERIKKI--AELASGFIYYVSRT 162 (242)
T ss_pred hCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHH--HhhCCCCEEEEeCC
Confidence 1 245677788999999999995 578888899998875422 22222222222222222 222444332 2333
Q ss_pred -cCCCCCCCCCCCC-CccHHHHHHHHHh
Q 015894 327 -GLGGCPYAKGASG-NVATEDVVYMLNG 352 (398)
Q Consensus 327 -GlGecp~a~graG-Na~lE~vv~~L~~ 352 (398)
|-|+ .++ ...+.+.+..+++
T Consensus 163 g~tG~------~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 163 GVTGA------RTELPDDLKELIKRIRK 184 (242)
T ss_pred CCCCC------ccCCChhHHHHHHHHHh
Confidence 3344 443 4556777777775
No 458
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=85.89 E-value=37 Score=33.32 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=66.3
Q ss_pred CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHH--hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894 165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFS--KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV 241 (398)
Q Consensus 165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~--~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~ 241 (398)
+-++.+++ .+..-.+.+.++|+|.|-+-.++.-.-. ......|.++.+...+.+.+-++. .+. + ...|+
T Consensus 14 g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~v--v---~DmPf 85 (263)
T TIGR00222 14 EEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLI--V---TDLPF 85 (263)
T ss_pred CCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceE--E---eCCCc
Confidence 45666665 3445556667899998887544332211 112246778888777665554432 111 1 12355
Q ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894 242 EGMVPPSKVAYVSKQLYD-MGCSEISLGDTIGVGTPGTVIPMLEAVLDA 289 (398)
Q Consensus 242 ~~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~ 289 (398)
.+-.+++....-+.++.+ .|++.|.|-|. .++.++++++.+.
T Consensus 86 ~sy~~~e~a~~na~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~ 128 (263)
T TIGR00222 86 MSYATPEQALKNAARVMQETGANAVKLEGG------EWLVETVQMLTER 128 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence 443357777666666555 99999999995 4466777777653
No 459
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.88 E-value=16 Score=34.14 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=69.0
Q ss_pred hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
+.++.+.++|++.|.+....+ .+.++.+++.++.+...+ .+. +.++
T Consensus 71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~ 116 (236)
T cd04730 71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR 116 (236)
T ss_pred HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence 357888899999998853311 133556666777654211 122 2345
Q ss_pred HHHhCCCCEEEEcc--CcCcCCHH--HHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCEEeecc
Q 015894 256 QLYDMGCSEISLGD--TIGVGTPG--TVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGISTVDSSV 325 (398)
Q Consensus 256 ~l~~~Gad~I~L~D--T~G~~~P~--~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~VD~Sv 325 (398)
.+.+.|++.|.+-. +.|...+. ...++++.+++.++ .|+-..+ |... .|+..++.+|++.|.+.-
T Consensus 117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMGT 186 (236)
T ss_pred HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEch
Confidence 56678999887633 22444332 34567777777553 3555544 5554 788888999999887753
No 460
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=85.86 E-value=21 Score=35.73 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCC-CCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEeCC-----------ccchHHHHHHHHHH
Q 015894 249 KVAYVSKQLYDMG-CSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHD-----------TYGQALSNILASLQ 315 (398)
Q Consensus 249 ~l~~~a~~l~~~G-ad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hn-----------d~GlA~ANalaAl~ 315 (398)
.+.++++.+.+.+ ...+.+ .|.|.+.+. .+..+++. +..+.|.++..+ ++...+.+.-++.+
T Consensus 77 dl~~li~~i~~~~~l~~i~i-tTNG~ll~~----~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~ 151 (329)
T PRK13361 77 GCDQLVARLGKLPGLEELSL-TTNGSRLAR----FAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA 151 (329)
T ss_pred cHHHHHHHHHhCCCCceEEE-EeChhHHHH----HHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 3445555555554 334444 477766543 33344432 222345554432 22334455555556
Q ss_pred hCCC--EEeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCC
Q 015894 316 MGIS--TVDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGV 355 (398)
Q Consensus 316 aGa~--~VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi 355 (398)
+|.. .|++.+. -|. | -.+++++..++++|+
T Consensus 152 ~Gi~~v~in~v~~-~g~---------N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 152 AGFERIKLNAVIL-RGQ---------NDDEVLDLVEFCRERGL 184 (329)
T ss_pred cCCCceEEEEEEE-CCC---------CHHHHHHHHHHHHhcCC
Confidence 6763 2333332 122 2 245555666666665
No 461
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=85.83 E-value=8 Score=36.07 Aligned_cols=79 Identities=24% Similarity=0.288 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc----------cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeC--Cccc-hHHHH
Q 015894 246 PPSKVAYVSKQLYDMGCSEISLG----------DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFH--DTYG-QALSN 309 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~H--nd~G-lA~AN 309 (398)
+++.+.+.++.+.++|+|.|.|- |-.|.. .|..+.++++++++..+ .++.+-.- .+.. -...-
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHH
Confidence 57888888998988999988774 444432 78889999999998876 34444332 2222 22222
Q ss_pred HHHHHHhCCCEEeecc
Q 015894 310 ILASLQMGISTVDSSV 325 (398)
Q Consensus 310 alaAl~aGa~~VD~Sv 325 (398)
+-...++|++.|..+-
T Consensus 144 ~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 144 AKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHHhCCCEEEECC
Confidence 3333457999886653
No 462
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=85.80 E-value=35 Score=32.88 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-CCCCCH-------HHHHHHHHHHHhCCCCE-EEEccCcCcCCHHH
Q 015894 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-EGMVPP-------SKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGT 278 (398)
Q Consensus 208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-~~r~~~-------~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~ 278 (398)
+++.++.+++.++.|+++|..+.. + ++... ....+. +.+.++++.+.++|+.. +-.-++.=..++.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~ 164 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQ-L---AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISK 164 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEE-e---cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHH
Confidence 456788999999999999997542 1 22111 011112 34455667777778842 22222222345566
Q ss_pred HHHHHHHH
Q 015894 279 VIPMLEAV 286 (398)
Q Consensus 279 v~~lv~~l 286 (398)
+.++++.+
T Consensus 165 ~~~li~~v 172 (279)
T TIGR00542 165 WLKWDHYL 172 (279)
T ss_pred HHHHHHHc
Confidence 66665544
No 463
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=85.79 E-value=44 Score=34.02 Aligned_cols=233 Identities=20% Similarity=0.255 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
+.+..++-+..|.++|.+.+-++-+ .+++++.+ ..+++..++.+.+ +-.+.+=.-.+.++|++.+||=-.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~-------~~e~A~A~-~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPG- 104 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVP-------DMEAAEAL-KEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPG- 104 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecC-------CHHHHHHH-HHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCc-
Confidence 3455577788999999999999853 23445433 3444323444443 222433333556789999998322
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHH----HHHHHHhCCCCEE
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAY----VSKQLYDMGCSEI 265 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~----~a~~l~~~Gad~I 265 (398)
|++. + ++++++|+.||+.|+.++..+. +|+-+. +..++|-+.+ -++.+.++|.+.|
T Consensus 105 -------Nig~--~---~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i 170 (361)
T COG0821 105 -------NIGF--K---DRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDI 170 (361)
T ss_pred -------ccCc--H---HHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence 3332 2 3788999999999999996665 444221 0123444333 4566777887644
Q ss_pred EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC-ccchHHH------HHHHH-HHhCC-CEEeeccccCCCCCCCCC
Q 015894 266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD-TYGQALS------NILAS-LQMGI-STVDSSVSGLGGCPYAKG 336 (398)
Q Consensus 266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA~A------NalaA-l~aGa-~~VD~Sv~GlGecp~a~g 336 (398)
.+. +=...|..+-+-.+.+.+... -|| |.== --|++.. -++.+ +..|+ |.|-+|+.+
T Consensus 171 ~iS--~K~Sdv~~~v~aYr~lA~~~d-yPL--HLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~--------- 236 (361)
T COG0821 171 KVS--VKASDVQLMVAAYRLLAKRCD-YPL--HLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTA--------- 236 (361)
T ss_pred EEE--EEcCCHHHHHHHHHHHHHhcC-CCc--ccceecccCcccceehHHHHHHHHHHhcCCceEEEecCC---------
Confidence 331 222244444444444444331 122 2211 1343322 22222 34565 677777652
Q ss_pred CCCCccHHHHHHH---HHhCCCC-CccC-----------hHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894 337 ASGNVATEDVVYM---LNGLGVR-TNVD-----------IRKLMIAGDFICKHLGRTSGSKTAIALSKT 390 (398)
Q Consensus 337 raGNa~lE~vv~~---L~~~Gi~-t~iD-----------l~~L~~~~~~v~~~~g~~~~~~~pivG~~~ 390 (398)
. |+||+... |+.+|+. .+++ .+-+..+.+..++..+.+.|=+.++.|.=+
T Consensus 237 ---~-P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVV 301 (361)
T COG0821 237 ---D-PVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVV 301 (361)
T ss_pred ---C-chhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEe
Confidence 1 25666543 4445654 1222 234445566667788888888888888643
No 464
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=85.76 E-value=48 Score=34.57 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccCC---cEEEEeC---CHhhHHHHHHcC
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEGA---RFPVLTP---NLKGFEAAVAAG 185 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~~---~l~~l~~---n~~~ie~a~~~G 185 (398)
..+.++.++-++.|.+.|+..|-+....-..+ .+...+..++++.+...++. ++...-+ +.+-++...++|
T Consensus 175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~ 254 (439)
T PRK14328 175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCD 254 (439)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCC
Confidence 46788888888889889999887753211111 11112345566666555443 2222223 223455556665
Q ss_pred --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894 186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260 (398)
Q Consensus 186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~ 260 (398)
...+++- =+.|+.-++. +|+. -..+.+.++++.+++. ++.+.++++ +|.|.+ +.+.+.+.++.+.++
T Consensus 255 ~~~~~l~iglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~i~~l 326 (439)
T PRK14328 255 KVCEHIHLPVQSGSNRILKK-MNRH--YTREYYLELVEKIKSNIPDVAITTDII--VGFPGE---TEEDFEETLDLVKEV 326 (439)
T ss_pred CcCceeeeCCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence 6777774 4556655443 5542 1123444566777776 555655555 777876 467777777777777
Q ss_pred CCCEE
Q 015894 261 GCSEI 265 (398)
Q Consensus 261 Gad~I 265 (398)
+.+.+
T Consensus 327 ~~~~~ 331 (439)
T PRK14328 327 RYDSA 331 (439)
T ss_pred CCCcc
Confidence 76543
No 465
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=85.76 E-value=45 Score=34.18 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHH
Q 015894 122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESF 199 (398)
Q Consensus 122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~ 199 (398)
.++++.|.+.|++.+.+.. .+|...+.+. .+...+..+. ....+++.+++.++..+.+.
T Consensus 67 ~~ia~~l~~~G~~g~~vas------------~~Ea~~lr~aGi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~------- 127 (382)
T cd06811 67 PFLARALLEAGIPGAVAVD------------FKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAMRPEVITVY------- 127 (382)
T ss_pred HHHHHHHHHcCCCeEeEec------------HHHHHHHHHcCCCHHhEEEccCCCHHHHHHHHHcCCCEEEEC-------
Confidence 4799999999998777753 2344333331 2211333222 24567888888876545442
Q ss_pred HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-----CCCCHHHHHHHHHHHHhC-CCCEEEEccCcCc
Q 015894 200 SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-----GMVPPSKVAYVSKQLYDM-GCSEISLGDTIGV 273 (398)
Q Consensus 200 ~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-----~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~ 273 (398)
.++.+..+.+.|++.|..+.+.|..-.|...- +=.+++.+.++++.+.++ +.+...| =+.+.
T Consensus 128 -----------s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~ 195 (382)
T cd06811 128 -----------SLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGL-TSFPC 195 (382)
T ss_pred -----------CHHHHHHHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeE-cccch
Confidence 13444455566777887766555532221110 014567777777777664 4554444 22222
Q ss_pred C---------CHHHHHHHHHHHHhhCCC--Ce-EEEEeCCccchHHHHHH-HHHHhCCCEEeeccccCCCCCC
Q 015894 274 G---------TPGTVIPMLEAVLDAVPV--DK-LAVHFHDTYGQALSNIL-ASLQMGISTVDSSVSGLGGCPY 333 (398)
Q Consensus 274 ~---------~P~~v~~lv~~l~~~~p~--~~-l~~H~Hnd~GlA~ANal-aAl~aGa~~VD~Sv~GlGecp~ 333 (398)
. .|....+.+..+++.+.. .+ -.+|+. |...+.++ ...+.|.+.+...+.=+|--|+
T Consensus 196 ~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~G---ga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~ 265 (382)
T cd06811 196 FLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAP---SATSCATLPLLAEYGVTHGEPGHALTGTTPL 265 (382)
T ss_pred hhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccC---CCcchhhHHHHHhCCCcEEeccEEEecCcch
Confidence 1 133222223333333321 11 223332 22223333 4557888888877777776554
No 466
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=85.66 E-value=38 Score=33.17 Aligned_cols=69 Identities=19% Similarity=0.085 Sum_probs=44.5
Q ss_pred HHHhCCCcEEEEEeeeecCCCCC----CCCHHHHHHHHHHHHhCCCCEE----------EEccCcCcCCHHHHHHHHHHH
Q 015894 221 AARELSIPVRGYLSCVVGCPVEG----MVPPSKVAYVSKQLYDMGCSEI----------SLGDTIGVGTPGTVIPMLEAV 286 (398)
Q Consensus 221 ~ak~~G~~v~~~l~~~fg~~~~~----r~~~~~l~~~a~~l~~~Gad~I----------~L~DT~G~~~P~~v~~lv~~l 286 (398)
..|+.+++|.+.-+.++..|-.. --..+++..+++.+.++|+|.+ .++|-.=.++|.++.++++.+
T Consensus 170 ~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 170 IMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence 33555666655444442222210 2345778888888888888865 467888888888888888887
Q ss_pred Hhh
Q 015894 287 LDA 289 (398)
Q Consensus 287 ~~~ 289 (398)
++.
T Consensus 250 ~~i 252 (258)
T TIGR01362 250 LAI 252 (258)
T ss_pred HHH
Confidence 753
No 467
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=85.65 E-value=13 Score=37.01 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHHHHcCCCEEEEe-ccCchH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894 178 FEAAVAAGAKEVAIF-ASASES-FSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS 254 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~-~~~Sd~-~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a 254 (398)
.+.+.++|.+-+.+. ..++-. +-..- -..+.++.++.++++++. ..++|.+.+-.-|| ++..+.+.+
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~---~~lPv~aD~dtGyG-------~~~~v~r~V 98 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA---VDVPVIMDADAGYG-------NAMSVWRAT 98 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCCC-------CcHHHHHHH
Confidence 455667888877662 121111 00000 124677777777655554 46777654443222 333477889
Q ss_pred HHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhC--CCCeE----EEEeCCccchHHHHHHHHHHhC
Q 015894 255 KQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAV--PVDKL----AVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 255 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~--p~~~l----~~H~Hnd~GlA~ANalaAl~aG 317 (398)
+++.++|+..|.|-|..+ +..+++....|++.++.- ++.-| ..-....+--|+.-+.+-.++|
T Consensus 99 ~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAG 178 (294)
T TIGR02319 99 REFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAG 178 (294)
T ss_pred HHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhC
Confidence 999999999999999874 345677777777777643 22212 1112234556888889999999
Q ss_pred CCEE
Q 015894 318 ISTV 321 (398)
Q Consensus 318 a~~V 321 (398)
||.|
T Consensus 179 AD~i 182 (294)
T TIGR02319 179 ADCI 182 (294)
T ss_pred CCEE
Confidence 9965
No 468
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=85.64 E-value=20 Score=36.80 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=60.2
Q ss_pred CCcEEEEe-C---CHhhHHHHHHcCCCEEEEecc-CchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeee
Q 015894 165 GARFPVLT-P---NLKGFEAAVAAGAKEVAIFAS-ASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVV 237 (398)
Q Consensus 165 ~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f 237 (398)
+.++++-+ + +.+.++...++|+.+|.+-+- .+|... ..+|+ +.++ +.++++.+++.+..|.+.++ +
T Consensus 108 ~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L-~~l~R~~~~~~----~~~~i~~~~~~~~~v~~dlI--~ 180 (394)
T PRK08898 108 DAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL-KALGRIHDGAE----ARAAIEIAAKHFDNFNLDLM--Y 180 (394)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH-HHhCCCCCHHH----HHHHHHHHHHhCCceEEEEE--c
Confidence 34566555 2 346788889999999988554 334333 33443 4443 44556667776666766665 6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 238 GCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 238 g~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
|.|.. +.+.+.+-++.+.+++++.|.+
T Consensus 181 GlPgq---t~~~~~~~l~~~~~l~p~~is~ 207 (394)
T PRK08898 181 ALPGQ---TLDEALADVETALAFGPPHLSL 207 (394)
T ss_pred CCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 76653 5677777788889999987653
No 469
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=85.58 E-value=38 Score=33.18 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894 213 IRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI 271 (398)
Q Consensus 213 ~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~ 271 (398)
+.+.++++.+|+. ++.|.+-+. .+.+...++++.+.++|+|.|.+..|.
T Consensus 143 ~~~~eiv~~vr~~~~~pv~vKi~----------~~~~~~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 143 ELSADVVKAVKDKTDVPVFAKLS----------PNVTDITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred HHHHHHHHHHHHhcCCCEEEECC----------CChhhHHHHHHHHHHcCCCEEEEEccC
Confidence 4455666666654 666653332 234567888999999999999886554
No 470
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=85.46 E-value=2.4 Score=40.43 Aligned_cols=119 Identities=19% Similarity=0.238 Sum_probs=69.9
Q ss_pred HHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHH---HHHHHHHHHHHHHhCCCc
Q 015894 157 MAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINC--TIED---SLIRYRDVALAARELSIP 228 (398)
Q Consensus 157 ~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~---~l~~~~~~v~~ak~~G~~ 228 (398)
...++++ .+++++-+. ++..+++.|.+.|++.|-++... ..+..- ..++ .+.++....++|.++|+.
T Consensus 114 ~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~-----Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~ 188 (243)
T COG0854 114 RDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGP-----YADAHDAAEQARADAELERLAKAAKLAAELGLK 188 (243)
T ss_pred HHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEeccc-----ccccCChHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence 3444443 357777776 57889999999999999987652 111111 2222 678899999999999999
Q ss_pred EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHh
Q 015894 229 VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD 288 (398)
Q Consensus 229 v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~ 288 (398)
|.+ | -+-+-.+..-++++.. +.+..+-.--++|.+=++.+..|.++...++.
T Consensus 189 VnA------G-HgLty~Nv~~~a~~~~-i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~ 240 (243)
T COG0854 189 VNA------G-HGLTYHNVKPLAAIPP-LAELNIGHSIIARAVFVGLEEAVREMKRLMKR 240 (243)
T ss_pred Eec------C-CCccccchHHHhcCCc-ceeecccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 862 1 1111122222222222 22222211223556666778888887776654
No 471
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=85.40 E-value=40 Score=34.47 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=59.5
Q ss_pred CcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894 166 ARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVVGC 239 (398)
Q Consensus 166 ~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~ 239 (398)
+.+++=+ | +.+.++...++|+.+|.+-+-.=+-..-..+|+ +.+++ .++++.+++.+..|.+.++ +|-
T Consensus 91 ~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~----~~ai~~~~~~~~~v~~dli--~Gl 164 (380)
T PRK09057 91 IEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEA----LAAIDLAREIFPRVSFDLI--YAR 164 (380)
T ss_pred ccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHH----HHHHHHHHHhCccEEEEee--cCC
Confidence 3555444 3 346688888999998888554322222223443 44444 4566777877777776666 676
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 240 PVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
|.. +.+.+.+-.+.+.+.+++.|.+-
T Consensus 165 Pgq---t~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 165 PGQ---TLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred CCC---CHHHHHHHHHHHHhcCCCeEEee
Confidence 754 56666666777888999877655
No 472
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=85.34 E-value=33 Score=32.24 Aligned_cols=157 Identities=13% Similarity=0.075 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCch
Q 015894 120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASASE 197 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~Sd 197 (398)
+-+++++.+.+.|++.|=+.-....... .-.+. +++..+.+..+.++.+ =.++.++++.+.+.|++.|-+-..
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~~n~-~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~--- 105 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRG-REPLF-ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTA--- 105 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccC-CCCCH-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh---
Confidence 6788999999999996666432211100 00122 3444444333333332 236788999999999998765311
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeee----------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894 198 SFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCV----------VGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266 (398)
Q Consensus 198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~----------fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~ 266 (398)
.+ +..+.+.++++ ..|.. +.+.+-.- +...+. ..+.....++++.+.+.|++.|.
T Consensus 106 ~l----------~~~~~~~~~~~---~~~~~~i~vsld~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~ 171 (232)
T TIGR03572 106 AL----------ENPDLIEEAAR---RFGSQCVVVSIDVKKELDGSDYKVYSDNGR-RATGRDPVEWAREAEQLGAGEIL 171 (232)
T ss_pred Hh----------cCHHHHHHHHH---HcCCceEEEEEEeccCCCCCcEEEEECCCc-ccCCCCHHHHHHHHHHcCCCEEE
Confidence 11 11122333332 33322 22112110 000000 11223456788899999999999
Q ss_pred EccC--cCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894 267 LGDT--IGVGTPGTVIPMLEAVLDAVPVDKLAV 297 (398)
Q Consensus 267 L~DT--~G~~~P~~v~~lv~~l~~~~p~~~l~~ 297 (398)
+-|- .|.... .-.++++.+++..+ +|+-.
T Consensus 172 i~~i~~~g~~~g-~~~~~~~~i~~~~~-ipvia 202 (232)
T TIGR03572 172 LNSIDRDGTMKG-YDLELIKTVSDAVS-IPVIA 202 (232)
T ss_pred EeCCCccCCcCC-CCHHHHHHHHhhCC-CCEEE
Confidence 9883 333222 23566777776654 34444
No 473
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=85.30 E-value=25 Score=36.03 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=79.6
Q ss_pred HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh---C-CC-cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894 179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE---L-SI-PVRGYLSCVVGCPVEGMVPPSKVAYV 253 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~---~-G~-~v~~~l~~~fg~~~~~r~~~~~l~~~ 253 (398)
+.-...|.|.+..++-..+. ..+.+++-+.+....+++++ . .. .-.. .|| +..+-..++.-..-
T Consensus 127 ~~q~~ig~DI~m~LD~~~~~------~~~~~~~~~av~rT~rw~~r~~~~~~~~~~~~----lfg-iVqGg~~~dLR~~s 195 (367)
T TIGR00449 127 EIQYALGSDIIMALDECTPP------PADYDYAEESLERTLRWAEESLEYHKRRNENA----LFG-IVQGGTYPDLRRQS 195 (367)
T ss_pred HHHHHHCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHhccCCce----EEE-EecCCCCHHHHHHH
Confidence 33345688877766543322 22444444444444444432 1 10 0011 121 22333444444455
Q ss_pred HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccC
Q 015894 254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGL 328 (398)
Q Consensus 254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~Gl 328 (398)
++.+.+.+.+.+.|.--...-.+.++.+++..++..+| +.|..+ +|.+ ..+.+.++..|+|.+|++.--.
T Consensus 196 a~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~~kPryl-----~Gvg~P~~i~~~v~~GvD~FD~~~ptr 267 (367)
T TIGR00449 196 AEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKDKPRYL-----MGVGTPELLANAVSLGIDMFDCVAPTR 267 (367)
T ss_pred HHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCcccceEe-----cCCCCHHHHHHHHHcCCCEEeeCCccc
Confidence 88888899999888775322345889999999998887 444433 4555 4789999999999999887543
No 474
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=85.19 E-value=53 Score=34.43 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=108.9
Q ss_pred hccCCCCccEEEe----------CCCcccCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCCcccCC-CC--HHH
Q 015894 90 LLGRVPGFVKIVE----------VGPRDGLQNEKNIVPAVVKVELIKLLVS-SGLAVVEATSFVSPKWVPQL-AD--AKD 155 (398)
Q Consensus 90 ~~~~~p~~I~i~D----------~TLRDG~Q~~~~~~~~~~k~~ia~~L~~-aGv~~IEvG~~~~~~~~p~~-~D--~~~ 155 (398)
|.+.+|+.+.+.= |+-|.........++.++..+++..+.+ .|+..|-++-.- |-+ .| .+.
T Consensus 102 l~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD-----PLll~d~~L~~ 176 (417)
T TIGR03820 102 ITHRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD-----PLLLSDDYLDW 176 (417)
T ss_pred ceeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc-----cccCChHHHHH
Confidence 4577887766641 2223211111235678888888888877 488777665321 111 23 234
Q ss_pred HHHHHHhccCCcEEEE-eC------C---HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894 156 VMAAIQNVEGARFPVL-TP------N---LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL 225 (398)
Q Consensus 156 v~~~i~~~~~~~l~~l-~~------n---~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~ 225 (398)
++..++.+|.++...+ ++ . .+-++...+.+. +.+.++.+- ..|..+...++++..++.
T Consensus 177 iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~--~~v~~h~nh----------p~Eit~~a~~Al~~L~~a 244 (417)
T TIGR03820 177 ILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHP--VWLNTHFNH----------PREITASSKKALAKLADA 244 (417)
T ss_pred HHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCC--eEEEEeCCC----------hHhChHHHHHHHHHHHHc
Confidence 4566667776653332 22 1 122344455654 444334332 224456677888899999
Q ss_pred CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC--CEEEEccCcCcCC----H-HHHHHHHHHHHhhCCC
Q 015894 226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC--SEISLGDTIGVGT----P-GTVIPMLEAVLDAVPV 292 (398)
Q Consensus 226 G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga--d~I~L~DT~G~~~----P-~~v~~lv~~l~~~~p~ 292 (398)
|+.+...-...-|-. -+++.+.++.+.+.++|+ ..+..+|-+.... | .+..++++.++.+.++
T Consensus 245 GI~l~nQsVLLkGVN----D~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 245 GIPLGNQSVLLAGVN----DCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred CCEEEeeceEECCcC----CCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence 998753222222211 367889999999999997 4788899776543 3 5678899999998765
No 475
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=85.13 E-value=18 Score=35.99 Aligned_cols=134 Identities=19% Similarity=0.103 Sum_probs=81.5
Q ss_pred hHHHHHHcCCCEEEEeccCchHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894 177 GFEAAVAAGAKEVAIFASASESFSKSNI----NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY 252 (398)
Q Consensus 177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~----~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~ 252 (398)
..+.+.++|.+-+.+.- .-+-....+ ..+.++.++.++++++.. .++|.+.+-.-|| ++..+..
T Consensus 27 SAri~e~aGf~ai~~ss--~~va~slG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~GyG-------~~~~v~~ 94 (290)
T TIGR02321 27 VAKLAEQAGFGGIWGSG--FELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADIDTGFG-------NAVNVHY 94 (290)
T ss_pred HHHHHHHcCCCEEEECH--HHHHHHCCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECCCCCC-------CcHHHHH
Confidence 34555667888666521 111100111 246778888776666543 6777654442222 2336888
Q ss_pred HHHHHHhCCCCEEEEccCc----------C---cCCHHHHHHHHHHHHhhCCCCeEEEEeC-------CccchHHHHHHH
Q 015894 253 VSKQLYDMGCSEISLGDTI----------G---VGTPGTVIPMLEAVLDAVPVDKLAVHFH-------DTYGQALSNILA 312 (398)
Q Consensus 253 ~a~~l~~~Gad~I~L~DT~----------G---~~~P~~v~~lv~~l~~~~p~~~l~~H~H-------nd~GlA~ANala 312 (398)
.++++.++|+..|.|-|.+ | +..++++.+.|++.++.-.+..+-+=.- ...--|+.-+.+
T Consensus 95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~a 174 (290)
T TIGR02321 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQA 174 (290)
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHH
Confidence 8999999999999999974 2 3466777777877776432212222111 123468888888
Q ss_pred HHHhCCCEEe
Q 015894 313 SLQMGISTVD 322 (398)
Q Consensus 313 Al~aGa~~VD 322 (398)
-.+||||.|=
T Consensus 175 Y~eAGAD~if 184 (290)
T TIGR02321 175 YEEAGADAIL 184 (290)
T ss_pred HHHcCCCEEE
Confidence 9999999663
No 476
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.12 E-value=19 Score=35.85 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=59.3
Q ss_pred HHHHHHHHH-hccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894 153 AKDVMAAIQ-NVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG 231 (398)
Q Consensus 153 ~~~v~~~i~-~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~ 231 (398)
..+.+..++ ..|..++.+-+.+.++++.|+++|+|.|.+ + |++ .+.++++++..++.+..+.
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~L-D-----------nm~----~e~vk~av~~~~~~~~~v~- 248 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLL-D-----------NFP----VWQTQEAVQRRDARAPTVL- 248 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEe-C-----------CCC----HHHHHHHHHHHhccCCCEE-
Confidence 334444455 356667788889999999999999999987 2 223 3445566666666555543
Q ss_pred EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
+.. ++-.+++.+.+++ +.|+|.|...--
T Consensus 249 -iea------SGGI~~~ni~~yA----~tGvD~Is~gal 276 (289)
T PRK07896 249 -LES------SGGLTLDTAAAYA----ETGVDYLAVGAL 276 (289)
T ss_pred -EEE------ECCCCHHHHHHHH----hcCCCEEEeChh
Confidence 221 2346787777765 589999987543
No 477
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.07 E-value=26 Score=35.21 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec--C------CC------------C-----CCCCH-------HHHHHHH
Q 015894 207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVG--C------PV------------E-----GMVPP-------SKVAYVS 254 (398)
Q Consensus 207 s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg--~------~~------------~-----~r~~~-------~~l~~~a 254 (398)
..++.++.++++++.++++|-.+.+.|...-. . +. . ...+. +.+.+.+
T Consensus 76 ~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA 155 (338)
T cd04733 76 ESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA 155 (338)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 34566788888888888888887665554100 0 00 0 01122 3444567
Q ss_pred HHHHhCCCCEEEE--c-----------------cCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCc----cchH-
Q 015894 255 KQLYDMGCSEISL--G-----------------DTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDT----YGQA- 306 (398)
Q Consensus 255 ~~l~~~Gad~I~L--~-----------------DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd----~GlA- 306 (398)
+.+.++|.|.|.| + |-.|.. .+.-+.++|+++|+.++ +.+|.+-.+-+ .|+.
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence 7778899998876 2 444532 24557789999999985 56788877621 2332
Q ss_pred ---HHHHHHHHHhCCCEEeecccc
Q 015894 307 ---LSNILASLQMGISTVDSSVSG 327 (398)
Q Consensus 307 ---~ANalaAl~aGa~~VD~Sv~G 327 (398)
+.-+-..-++|++.|+++...
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC
Confidence 222222235799999988654
No 478
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=85.05 E-value=34 Score=32.15 Aligned_cols=185 Identities=12% Similarity=0.116 Sum_probs=103.0
Q ss_pred CCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH-h-------------hHHHHHHcCCCEEEEeccCch
Q 015894 132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL-K-------------GFEAAVAAGAKEVAIFASASE 197 (398)
Q Consensus 132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~-~-------------~ie~a~~~Gv~~v~i~~~~Sd 197 (398)
|+|.||+=...-... ...+..+.++.+++..+..+..-+|.. + =++.+++.|++.|.+-...
T Consensus 24 ~aD~vElR~D~~~~~--~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-- 99 (225)
T cd00502 24 GADAVELRVDLLEDP--SIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-- 99 (225)
T ss_pred CCCEEEEEEeecccc--chHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc--
Confidence 999999965321110 011233445555543334444333421 1 1456778889999885432
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894 198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG 277 (398)
Q Consensus 198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~ 277 (398)
+...+.++.+++.+.++-+..=. | ....+.+.+....+.+...|+|.+-++=+.- .+.
T Consensus 100 ---------------~~~~~~~~~~~~~~~kiI~S~H~-f----~~tp~~~~l~~~~~~~~~~gadivKla~~~~--~~~ 157 (225)
T cd00502 100 ---------------ALLEELINSRKKGNTKIIGSYHD-F----SGTPSDEELVSRLEKMAALGADIVKIAVMAN--SIE 157 (225)
T ss_pred ---------------hHHHHHHHHHHhCCCEEEEEecc-C----CCCcCHHHHHHHHHHHHHhCCCEEEEEecCC--CHH
Confidence 23445566666777776532211 1 1112467888899999999999988876533 377
Q ss_pred HHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894 278 TVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN 351 (398)
Q Consensus 278 ~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~ 351 (398)
++.++++...+. .+..|+-.-.=-..| ...=+.+-..|....-+++. + |- ..|+.+++++...++
T Consensus 158 D~~~ll~~~~~~~~~~~~p~i~~~MG~~G--~~SRil~~~~gs~~t~~~~~---~-~s---ApGQ~~~~~l~~~~~ 224 (225)
T cd00502 158 DNLRLLKFTRQVKNLYDIPLIAINMGELG--KLSRILSPVFGSPLTYASLP---E-PS---APGQLSVEELKQALS 224 (225)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCCC--chhhccccccCCcccccCCC---C-CC---CCCCcCHHHHHHHHh
Confidence 777777766543 122344332211122 22333334466666555553 3 33 466999988876653
No 479
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.98 E-value=35 Score=32.19 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccC
Q 015894 119 VVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASA 195 (398)
Q Consensus 119 ~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~ 195 (398)
..-+++++.+.+.|++.+-+--... ... ...+.+.+.+..+. .++.+.+= .++.++++.++++|++.|.+-...
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~--~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEG--ERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcC--CcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 3567889999999999886642211 100 01223333333332 23444332 267889999999999998874321
Q ss_pred chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeee----ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894 196 SESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCV----VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270 (398)
Q Consensus 196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~----fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT 270 (398)
- +..+.+.+++ +..|. .+.+.+.+- ....+... +...+.++++.+.+.|++.|.+-|+
T Consensus 109 ~-------------~~~~~~~~i~---~~~g~~~i~~sid~~~~~v~~~g~~~~-~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 109 V-------------ENPEIVRELS---EEFGSERVMVSLDAKDGEVVIKGWTEK-TGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred h-------------hChHHHHHHH---HHhCCCcEEEEEEeeCCEEEECCCccc-CCCCHHHHHHHHHHcCCCEEEEEee
Confidence 0 0112222222 33332 222222210 00000000 1124566788888999999998776
Q ss_pred --cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHH
Q 015894 271 --IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVY 348 (398)
Q Consensus 271 --~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~ 348 (398)
.|...+.. .++++.+++..+ +|+-.-+.=.. ..++....++||+.|=+.-.-+. +.-.+++++.
T Consensus 172 ~~~g~~~g~~-~~~i~~i~~~~~-iPvia~GGI~~---~~di~~~~~~Ga~gv~vgsa~~~---------~~~~~~~~~~ 237 (241)
T PRK13585 172 DVEGLLEGVN-TEPVKELVDSVD-IPVIASGGVTT---LDDLRALKEAGAAGVVVGSALYK---------GKFTLEEAIE 237 (241)
T ss_pred cCCCCcCCCC-HHHHHHHHHhCC-CCEEEeCCCCC---HHHHHHHHHcCCCEEEEEHHHhc---------CCcCHHHHHH
Confidence 55555533 345777777664 46666554331 23444557789987644333232 2445666655
Q ss_pred HH
Q 015894 349 ML 350 (398)
Q Consensus 349 ~L 350 (398)
++
T Consensus 238 ~~ 239 (241)
T PRK13585 238 AV 239 (241)
T ss_pred Hh
Confidence 54
No 480
>PRK05926 hypothetical protein; Provisional
Probab=84.93 E-value=14 Score=37.82 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHH
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNI 310 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANa 310 (398)
...+++++.+.++++ +.|+.+|+|.. |.. ..+.+.++++.+++.+|+ +.+|.- +..|+...-.
T Consensus 97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~ 171 (370)
T PRK05926 97 WFYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEV 171 (370)
T ss_pred ccCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHH
Confidence 346789999999988 79999999994 554 236678899999999986 455533 3445666776
Q ss_pred HHHHH-hCCCEEeec
Q 015894 311 LASLQ-MGISTVDSS 324 (398)
Q Consensus 311 laAl~-aGa~~VD~S 324 (398)
+..++ ||++.+...
T Consensus 172 l~~LkeAGl~~~~g~ 186 (370)
T PRK05926 172 LQTLKIAGLDSIPGG 186 (370)
T ss_pred HHHHHHcCcCccCCC
Confidence 77775 799877643
No 481
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=84.88 E-value=4 Score=39.73 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=11.6
Q ss_pred HHHHHHhCCCEEeeccccCCC
Q 015894 310 ILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 310 alaAl~aGa~~VD~Sv~GlGe 330 (398)
.-.+.++|....-.-+.|+|+
T Consensus 164 i~~l~~~Gi~v~~~~i~Gl~e 184 (296)
T TIGR00433 164 LENAKKAGLKVCSGGIFGLGE 184 (296)
T ss_pred HHHHHHcCCEEEEeEEEeCCC
Confidence 334446777644444667765
No 482
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=84.81 E-value=12 Score=34.14 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=55.7
Q ss_pred CHHHHHHHHHh-ccCC-cEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 015894 152 DAKDVMAAIQN-VEGA-RFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV 229 (398)
Q Consensus 152 D~~~v~~~i~~-~~~~-~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v 229 (398)
+..+....+++ .|.. ++.+=+.+.++++.++++|+|.|++= .. ++ +.++++++..++.+..+
T Consensus 65 ~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD-~~-----------~~----~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 65 GIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLD-NM-----------SP----EDLKEAVEELRELNPRV 128 (169)
T ss_dssp SHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEE-S------------CH----HHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEec-Cc-----------CH----HHHHHHHHHHhhcCCcE
Confidence 44555666664 4544 35555689999999999999999982 22 22 45567777777776665
Q ss_pred EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894 230 RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG 268 (398)
Q Consensus 230 ~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~ 268 (398)
...++ +-.+++.+.+++ +.|+|.|.+.
T Consensus 129 ~ie~S--------GGI~~~ni~~ya----~~gvD~isvg 155 (169)
T PF01729_consen 129 KIEAS--------GGITLENIAEYA----KTGVDVISVG 155 (169)
T ss_dssp EEEEE--------SSSSTTTHHHHH----HTT-SEEEEC
T ss_pred EEEEE--------CCCCHHHHHHHH----hcCCCEEEcC
Confidence 53333 224566655554 5899988765
No 483
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=84.78 E-value=39 Score=35.66 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec-----C-CC-CCc-ccCCCCHHHHHHHHHhc-cCC--cEEEEeCC---HhhHHH
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATS-----F-VS-PKW-VPQLADAKDVMAAIQNV-EGA--RFPVLTPN---LKGFEA 180 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-----~-~~-~~~-~p~~~D~~~v~~~i~~~-~~~--~l~~l~~n---~~~ie~ 180 (398)
..+.+..++-++.|.+.|+..|-+.. + .. ... .+...+..++++.+... ++. ++.+..+. .+-++.
T Consensus 196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~ 275 (467)
T PRK14329 196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEV 275 (467)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHH
Confidence 46788888888889888998776531 1 10 000 00012344555555432 333 33333232 334566
Q ss_pred HHHc--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894 181 AVAA--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255 (398)
Q Consensus 181 a~~~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~ 255 (398)
..+. |...|++-+ +.||.-++ .+|+. -..+.+.++++.+++. ++.+..+++ +|.|.+ +.+.+.+.++
T Consensus 276 m~~~~~g~~~i~iglQSgsd~vLk-~m~R~--~t~~~~~~~i~~ir~~~~~~~i~~d~I--vGfPgE---T~edf~~tl~ 347 (467)
T PRK14329 276 MAKYDNICKHIHLPVQSGSDRILK-LMNRK--YTREWYLDRIDAIRRIIPDCGISTDMI--AGFPTE---TEEDHQDTLS 347 (467)
T ss_pred HHhCCCCCCeEEeCCCcCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEeEE--EeCCCC---CHHHHHHHHH
Confidence 6665 788888854 44444333 34442 1123445566777776 455665555 777865 5677777788
Q ss_pred HHHhCCCCEEE
Q 015894 256 QLYDMGCSEIS 266 (398)
Q Consensus 256 ~l~~~Gad~I~ 266 (398)
.+.+.+.+.+.
T Consensus 348 ~i~~l~~~~~~ 358 (467)
T PRK14329 348 LMEEVGYDFAF 358 (467)
T ss_pred HHHhhCCCeEe
Confidence 88888877643
No 484
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.75 E-value=40 Score=32.70 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=88.5
Q ss_pred HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894 178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM 244 (398)
Q Consensus 178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r 244 (398)
++...+.|+|.|-+-++.||.... ..-|.+.++.+ +.++..|+. .+++. .+++ + +|.. .
T Consensus 30 ~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv-~m~Y-~-Npi~-~ 101 (256)
T TIGR00262 30 IKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG-LLTY-Y-NLIF-R 101 (256)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE-EEEe-c-cHHh-h
Confidence 455677899999999988886211 12234444444 344555543 55543 2332 2 2211 1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324 (398)
Q Consensus 245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S 324 (398)
+. +.++++.+.++|++.|.+.|- .+++..++++.+++.-. .+.+=+-.+.-..-...+++...|.-++= |
T Consensus 102 ~G---~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~gl--~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s 171 (256)
T TIGR00262 102 KG---VEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHGV--KPIFLVAPNADDERLKQIAEKSQGFVYLV-S 171 (256)
T ss_pred hh---HHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCCC--cEEEEECCCCCHHHHHHHHHhCCCCEEEE-E
Confidence 11 234677788999999999994 55788889999887632 33444444444444455555555665543 3
Q ss_pred cccCCCCCCCCCCC--CCccHHHHHHHHHh
Q 015894 325 VSGLGGCPYAKGAS--GNVATEDVVYMLNG 352 (398)
Q Consensus 325 v~GlGecp~a~gra--GNa~lE~vv~~L~~ 352 (398)
+.|..+ .. =+..+.+.+..+++
T Consensus 172 ~~G~TG------~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 172 RAGVTG------ARNRAASALNELVKRLKA 195 (256)
T ss_pred CCCCCC------CcccCChhHHHHHHHHHh
Confidence 457765 32 23567777777775
No 485
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=84.69 E-value=52 Score=33.93 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH---HHHHHHHHh-c--cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894 117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA---KDVMAAIQN-V--EGARFPVLTPNLKGFEAAVAAGAKEVA 190 (398)
Q Consensus 117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~---~~v~~~i~~-~--~~~~l~~l~~n~~~ie~a~~~Gv~~v~ 190 (398)
+.-+-.+.++.+.++|++.||+.... ..|--.+. +...+.+++ + .+.++.+++.|...-.. ...| .
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~d---l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~-~~~g----~ 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDD---LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPV-FKDG----G 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccc---cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcc-ccCC----C
Confidence 33455788999999999999986311 11110111 111223331 1 24555555444210000 0001 1
Q ss_pred EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH--------HHHHHHHHHHHhCCC
Q 015894 191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP--------SKVAYVSKQLYDMGC 262 (398)
Q Consensus 191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~--------~~l~~~a~~l~~~Ga 262 (398)
+ .+.++- .++.+++.+++.+++|+++|-+..+.+....+.+.....+. +.+..+++.+.+.|.
T Consensus 102 l-as~d~~--------vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~ 172 (382)
T TIGR02631 102 F-TSNDRS--------VRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGY 172 (382)
T ss_pred C-CCCCHH--------HHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 1 111111 24678899999999999999975322221111010111111 223334444455442
Q ss_pred C-EEEEccC-----cC--cCCHHHHHHHHHHHHhhCCC---CeEEE-EeCCccchHHHHHHHHHHhCCCEEeeccccC-C
Q 015894 263 S-EISLGDT-----IG--VGTPGTVIPMLEAVLDAVPV---DKLAV-HFHDTYGQALSNILASLQMGISTVDSSVSGL-G 329 (398)
Q Consensus 263 d-~I~L~DT-----~G--~~~P~~v~~lv~~l~~~~p~---~~l~~-H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl-G 329 (398)
. .|.|-=. .+ +-++.++..+++.+- .|+ +.+.+ |. +-.|.-++.+++-...+-+.+++=++.. |
T Consensus 173 GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~-~~~g~n~~~~i~~~l~~~kl~HvhlnD~~g 249 (382)
T TIGR02631 173 GLRFALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHE-QMAGLNFTHGIAQALWAGKLFHIDLNGQRG 249 (382)
T ss_pred CcEEEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhH-hhcCCCHHHHHHHHHhCCCEEEEecCCCCC
Confidence 2 3444211 11 345566777776653 243 12333 32 3344444555542222445555555542 2
Q ss_pred C---CCCCCCCCCCccHH-HHHHHHHhCCCC
Q 015894 330 G---CPYAKGASGNVATE-DVVYMLNGLGVR 356 (398)
Q Consensus 330 e---cp~a~graGNa~lE-~vv~~L~~~Gi~ 356 (398)
+ .-.+. +.|+.... +++..|++.|++
T Consensus 250 ~~~D~hL~~-G~G~l~~~~~~l~~L~~~GY~ 279 (382)
T TIGR02631 250 IKFDQDLRF-GHGDLKAAFFLVDLLESGGYQ 279 (382)
T ss_pred CCccCCcCC-CCCCHHHHHHHHHHHHHCCCC
Confidence 1 11122 48899988 599999987664
No 486
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=84.65 E-value=31 Score=34.38 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhh-C
Q 015894 213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDA-V 290 (398)
Q Consensus 213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~ 290 (398)
+.+.++++.+.+.|+.. +.++ -|-|. -+ ..+.++++.+.+. |...+.+ -|.|.+.+. .+..+++. +
T Consensus 46 eei~~~i~~~~~~gv~~-V~lt--GGEPl-l~---~~l~~li~~i~~~~gi~~v~i-tTNG~ll~~----~~~~L~~~gl 113 (334)
T TIGR02666 46 EEIERLVRAFVGLGVRK-VRLT--GGEPL-LR---KDLVELVARLAALPGIEDIAL-TTNGLLLAR----HAKDLKEAGL 113 (334)
T ss_pred HHHHHHHHHHHHCCCCE-EEEE--Ccccc-cc---CCHHHHHHHHHhcCCCCeEEE-EeCchhHHH----HHHHHHHcCC
Confidence 34455667777778642 2232 23332 12 2355566666553 6656666 678887765 34444443 2
Q ss_pred CCCeEEEEeCCc------------cchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894 291 PVDKLAVHFHDT------------YGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV 355 (398)
Q Consensus 291 p~~~l~~H~Hnd------------~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi 355 (398)
..+.|.+|+.+. +...+.+...+.++|.. .+++.+. -|. |. .+++++..+++.|+
T Consensus 114 ~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~-~g~---------n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 114 KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVM-RGV---------NDDEIVDLAEFAKERGV 183 (334)
T ss_pred CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-CCC---------CHHHHHHHHHHHHhcCC
Confidence 234566665332 23345555566678876 3343322 222 33 46677777777776
Q ss_pred C
Q 015894 356 R 356 (398)
Q Consensus 356 ~ 356 (398)
+
T Consensus 184 ~ 184 (334)
T TIGR02666 184 T 184 (334)
T ss_pred e
Confidence 4
No 487
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=84.52 E-value=23 Score=37.18 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=66.7
Q ss_pred HHHHHHHHh-cc---CCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894 154 KDVMAAIQN-VE---GARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL 225 (398)
Q Consensus 154 ~~v~~~i~~-~~---~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~ 225 (398)
..+++.+++ .+ +..+++=++ +.+-++...++|+.+|.+-+-.-+-...+.+|+. ...+.+.+.++.+++.
T Consensus 134 ~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~--~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 134 ARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRK--DDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhC
Confidence 445555553 22 445555442 3456788889999998885543222233334442 1233445667888888
Q ss_pred C-CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894 226 S-IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267 (398)
Q Consensus 226 G-~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L 267 (398)
| ..|.+.++ +|.|.. +.+.+.+-++.+.+.|++.|.+
T Consensus 212 g~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~~~~is~ 249 (449)
T PRK09058 212 DRAAVVCDLI--FGLPGQ---TPEIWQQDLAIVRDLGLDGVDL 249 (449)
T ss_pred CCCcEEEEEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 8 56766665 777754 5677888888889999987754
No 488
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=84.48 E-value=39 Score=32.29 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894 120 VKVELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASAS 196 (398)
Q Consensus 120 ~k~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~S 196 (398)
+-+++++.+.+.|++.|=+-=. ..... .+..+++..+.+..+.++++ =.++.++++.+++.|++.+.+-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~----~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~-- 106 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGR----GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTA-- 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCC----CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch--
Confidence 5678999999999886555311 11111 11224444443323444443 347899999999999998765322
Q ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC--
Q 015894 197 ESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT-- 270 (398)
Q Consensus 197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT-- 270 (398)
.. +..+.+.++++...+. ++.+.. .+. . .....+...+.++++.+.+.|++.|.+-|-
T Consensus 107 -~l----------~~p~l~~~i~~~~~~~i~vsld~~~~~v~--~---~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~ 170 (241)
T PRK14024 107 -AL----------ENPEWCARVIAEHGDRVAVGLDVRGHTLA--A---RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTK 170 (241)
T ss_pred -Hh----------CCHHHHHHHHHHhhhhEEEEEEEeccEec--c---CCeeecCccHHHHHHHHHhcCCCEEEEEeecC
Confidence 11 1123334444433322 111210 111 0 001112346678888999999998877665
Q ss_pred cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHH
Q 015894 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYM 349 (398)
Q Consensus 271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~ 349 (398)
.|.+.+. -.++++.+++..+ +|+-.-+. .....-+..+. .-...+|+.+.|-+- -.|..++++++..
T Consensus 171 ~g~~~G~-d~~~i~~i~~~~~-ipviasGG----i~s~~D~~~l~~~~~~GvdgV~igra~------~~g~~~~~~~~~~ 238 (241)
T PRK14024 171 DGTLTGP-NLELLREVCARTD-APVVASGG----VSSLDDLRALAELVPLGVEGAIVGKAL------YAGAFTLPEALAV 238 (241)
T ss_pred CCCccCC-CHHHHHHHHhhCC-CCEEEeCC----CCCHHHHHHHhhhccCCccEEEEeHHH------HcCCCCHHHHHHH
Confidence 3444443 3566777777653 45665432 22222222221 111224455555555 5677778877554
No 489
>PRK06354 pyruvate kinase; Provisional
Probab=84.48 E-value=68 Score=35.13 Aligned_cols=250 Identities=12% Similarity=0.107 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEEEeCCHhhH---HHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPVLTPNLKGF---EAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~l~~n~~~i---e~a~~~Gv~~v 189 (398)
.++..++..| +.-.+.|+|+|-+.|--+. .|..++.+.+.+ -.++.+.+-.-+.+++ +.-++. +|.|
T Consensus 175 ~ltekD~~di-~f~~~~~vD~ia~SFVr~~------~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgI 246 (590)
T PRK06354 175 AITEKDREDL-IFGLEQGVDWIALSFVRNP------SDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGL 246 (590)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEE
Confidence 3666666654 6777999999988764332 344444455532 2244455555555444 333444 7766
Q ss_pred EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCV--VGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~--fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~ 266 (398)
.|. -.|. ...+..++.....+++++.|+++|..|-+ +=+.. ...| +.+..++-+++..+. -|+|.+-
T Consensus 247 mVa--RGDL----gve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p---~PTRAEvsDVaNav~-DG~DavM 316 (590)
T PRK06354 247 MVA--RGDL----GVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNP---RPTRAEASDVANAIL-DGTDAVM 316 (590)
T ss_pred EEc--cchh----hcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---CCCchhhHHHHHHhh-hCCcEEE
Confidence 553 2243 22234566777788999999999998752 11111 1123 344566666665443 7999998
Q ss_pred Ec-cCcCcCCHHHHHHHHHHHHhhCCC-CeEEEE--e----CCcc--chHHHHHHHHHHhCCC-EEeeccccCCC-----
Q 015894 267 LG-DTIGVGTPGTVIPMLEAVLDAVPV-DKLAVH--F----HDTY--GQALSNILASLQMGIS-TVDSSVSGLGG----- 330 (398)
Q Consensus 267 L~-DT~G~~~P~~v~~lv~~l~~~~p~-~~l~~H--~----Hnd~--GlA~ANalaAl~aGa~-~VD~Sv~GlGe----- 330 (398)
|. -|+=.-.|.+..+.++.+.+..-. .....+ . +++. .+|.+....|-..+++ +|=.|-.|--.
T Consensus 317 LS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk 396 (590)
T PRK06354 317 LSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSK 396 (590)
T ss_pred ecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHh
Confidence 87 566677898888888777654311 000001 0 1222 2444455567788887 55666665432
Q ss_pred ----CCCCCCCCCCccHHHHHHHHHh-CCCCC-----ccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894 331 ----CPYAKGASGNVATEDVVYMLNG-LGVRT-----NVDIRKLMIAGDFICKHLGRTSGSKTAIA 386 (398)
Q Consensus 331 ----cp~a~graGNa~lE~vv~~L~~-~Gi~t-----~iDl~~L~~~~~~v~~~~g~~~~~~~piv 386 (398)
||. -.-.+-+.+..-|.- .|+.+ ..+.+.+.+.+....+..|.--+....++
T Consensus 397 ~Rp~~pI----~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~ 458 (590)
T PRK06354 397 YRPKTPI----LAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVI 458 (590)
T ss_pred hCCCCCE----EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 331 112234666655554 25432 23555666655555555666555554443
No 490
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=84.42 E-value=32 Score=34.14 Aligned_cols=120 Identities=21% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CC
Q 015894 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PV 292 (398)
Q Consensus 215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~ 292 (398)
+.+.++.+.+.|+.. +.++ -|-|. -+ ..+.++++.+.+. |...|.+ -|.|.+.+. .+..+++.- ..
T Consensus 54 i~~~i~~~~~~gi~~-I~~t--GGEPl-l~---~~l~~li~~i~~~~~~~~i~i-tTNG~ll~~----~~~~L~~agl~~ 121 (331)
T PRK00164 54 IERLVRAFVALGVRK-VRLT--GGEPL-LR---KDLEDIIAALAALPGIRDLAL-TTNGYLLAR----RAAALKDAGLDR 121 (331)
T ss_pred HHHHHHHHHHCCCCE-EEEE--CCCCc-Cc---cCHHHHHHHHHhcCCCceEEE-EcCchhHHH----HHHHHHHcCCCE
Confidence 344556666777643 2232 23332 22 2355666666665 4556666 688876553 344554432 23
Q ss_pred CeEEEEeCCc-----------cchHHHHHHHHHHhCCCE--EeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q 015894 293 DKLAVHFHDT-----------YGQALSNILASLQMGIST--VDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGVR 356 (398)
Q Consensus 293 ~~l~~H~Hnd-----------~GlA~ANalaAl~aGa~~--VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi~ 356 (398)
+.|++|..+. +-..+.+.-.+.++|... ++..+. -|. | -.+++++..+++.|++
T Consensus 122 i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~-~g~---------n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 122 VNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLM-KGV---------NDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred EEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEE-CCC---------CHHHHHHHHHHHHhCCCe
Confidence 4566665332 223344445555777732 333332 132 3 3677777777777764
No 491
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=84.36 E-value=21 Score=36.51 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCC---------------
Q 015894 213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGT--------------- 275 (398)
Q Consensus 213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~--------------- 275 (398)
+++.++.+.|++.++-|-+ +.+ ++.+.+..+++.+.+..... |.+.... ..+.
T Consensus 13 ~~~~~lL~~A~~~~yAVgA-fNv---------~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~ 82 (357)
T TIGR01520 13 DDVHKLFQYAKENNFAIPA-INC---------TSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASIL 82 (357)
T ss_pred HHHHHHHHHHHHCCceEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhh
Confidence 4567788999999997742 321 46788999999999998775 4443311 1111
Q ss_pred -HHHHHHHHHHHHhhCCCCeEEEEeCCccchHH--HHHHHHHHhC-----------CC--EEeeccccCCCCCCCCCCCC
Q 015894 276 -PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL--SNILASLQMG-----------IS--TVDSSVSGLGGCPYAKGASG 339 (398)
Q Consensus 276 -P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~--ANalaAl~aG-----------a~--~VD~Sv~GlGecp~a~graG 339 (398)
+..+..++..+.++.+ +|+.+|. |.|.-. .....|+++| .+ ++|+|-..+-+
T Consensus 83 ~~~~~~~~v~~~Ae~a~-VPValHL--DHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeE--------- 150 (357)
T TIGR01520 83 GAIAGAHHVHSIAEHYG-VPVVLHT--DHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEE--------- 150 (357)
T ss_pred hHHHHHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHH---------
Confidence 2336777787777774 4677665 445444 4466677775 65 77999888887
Q ss_pred Cc-cHHHHHHHHHh
Q 015894 340 NV-ATEDVVYMLNG 352 (398)
Q Consensus 340 Na-~lE~vv~~L~~ 352 (398)
|. -|.+++...+.
T Consensus 151 NI~~TrevVe~Ah~ 164 (357)
T TIGR01520 151 NIEICVKYLKRMAK 164 (357)
T ss_pred HHHHHHHHHHHHHH
Confidence 66 56677776663
No 492
>PRK05927 hypothetical protein; Provisional
Probab=84.31 E-value=2.9 Score=42.49 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeE------EE-EeCCccchHHHHHHH
Q 015894 243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKL------AV-HFHDTYGQALSNILA 312 (398)
Q Consensus 243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l------~~-H~Hnd~GlA~ANala 312 (398)
...+++.+.+.++++.+.|+.+|.| +.|.- ..+.+.++++.+++.+|++.+ ++ |.--..|+.+-..+.
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~ 151 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALE 151 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHH
Confidence 3568899999999999999999998 44443 235788899999999886311 11 344557999999999
Q ss_pred HHH-hCCCEEe
Q 015894 313 SLQ-MGISTVD 322 (398)
Q Consensus 313 Al~-aGa~~VD 322 (398)
.++ ||++.+.
T Consensus 152 ~Lk~aGl~~l~ 162 (350)
T PRK05927 152 RLWDAGQRTIP 162 (350)
T ss_pred HHHHcCcccCC
Confidence 886 9997544
No 493
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=84.29 E-value=53 Score=36.56 Aligned_cols=176 Identities=7% Similarity=-0.028 Sum_probs=92.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEe-CCHhhHHHHHHcCCCEE
Q 015894 115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLT-PNLKGFEAAVAAGAKEV 189 (398)
Q Consensus 115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~n~~~ie~a~~~Gv~~v 189 (398)
.-+++..++-+..|.++|.+.+-++.+. ..+++.+...-+.+ -++.+.+=. -+.+-...|++. ++.|
T Consensus 106 T~D~eatv~Qi~~l~~aGceiVRvtv~~-------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-vdki 177 (733)
T PLN02925 106 TKDVEATVDQVMRIADKGADIVRITVQG-------KKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAEC-FDKI 177 (733)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHHHh-cCCe
Confidence 3566777888999999999999998643 23443332222221 123333322 243333345566 8888
Q ss_pred EEeccCchHHHhhhc------CCCHHHHHHHH----HHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHH----H
Q 015894 190 AIFASASESFSKSNI------NCTIEDSLIRY----RDVALAARELSIPVRGYLSCVVGCPVE---GM--VPPSK----V 250 (398)
Q Consensus 190 ~i~~~~Sd~~~~~~~------~~s~~~~l~~~----~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r--~~~~~----l 250 (398)
||=-. |=...++.+ .-..++-++++ ..+|+.||++|..++..+. .|+-.. .+ .+|+- .
T Consensus 178 RINPG-N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN--~GSLs~ri~~~yGdtp~gmVeSA 254 (733)
T PLN02925 178 RVNPG-NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN--HGSLSDRIMSYYGDSPRGMVESA 254 (733)
T ss_pred EECCc-ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHH
Confidence 87211 100000000 00123344444 4599999999999996554 232110 01 13433 3
Q ss_pred HHHHHHHHhCCCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894 251 AYVSKQLYDMGCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD 301 (398)
Q Consensus 251 ~~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn 301 (398)
.+.++.+.++|-+. |+++.|.=...=...+.++..+.+.--+-||+++.--
T Consensus 255 le~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTE 307 (733)
T PLN02925 255 FEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTE 307 (733)
T ss_pred HHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 34667777888874 6677764444444555555665544222345444433
No 494
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=84.12 E-value=38 Score=34.74 Aligned_cols=142 Identities=21% Similarity=0.122 Sum_probs=84.6
Q ss_pred HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCCC
Q 015894 179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGMV 245 (398)
Q Consensus 179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r~ 245 (398)
++|+++|.|.|-|... +|+. +++..+|-|.|+=+....++++.+|+. |.. |..-++..- .....-.
T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d-~~~~~g~ 234 (363)
T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDD-FFDGGGL 234 (363)
T ss_pred HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc-cCCCCCC
Confidence 5778899998887532 1111 233445667787788888888888765 443 555555321 1122235
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEEccCcC----cCC---HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894 246 PPSKVAYVSKQLYDMG-CSEISLGDTIG----VGT---PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG 317 (398)
Q Consensus 246 ~~~~l~~~a~~l~~~G-ad~I~L~DT~G----~~~---P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG 317 (398)
+++...++++.+.+.| ++.|.+.--.- ... |.....+...++......-+.+-. ......+..+++.|
T Consensus 235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~----i~~~~~Ae~~l~~g 310 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGG----INDPEQAEEILASG 310 (363)
T ss_pred CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCC----CCCHHHHHHHHHcC
Confidence 7889999999999999 68766543211 111 333445556666554311122222 44456677888888
Q ss_pred -CCEEeeccccCCC
Q 015894 318 -ISTVDSSVSGLGG 330 (398)
Q Consensus 318 -a~~VD~Sv~GlGe 330 (398)
||.| |||.
T Consensus 311 ~aDlV-----a~gR 319 (363)
T COG1902 311 RADLV-----AMGR 319 (363)
T ss_pred CCCEE-----Eech
Confidence 6644 6665
No 495
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=84.10 E-value=5.7 Score=33.67 Aligned_cols=78 Identities=13% Similarity=0.021 Sum_probs=43.3
Q ss_pred HHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE
Q 015894 219 ALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH 298 (398)
Q Consensus 219 v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H 298 (398)
++.+++.|++..+++- |+.-..+.-....+.+.+.++|...+.++=+.|..++..+..+.+.+.+ .|. |+-+|
T Consensus 20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h 92 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH 92 (110)
T ss_dssp HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence 3456789998765443 3422111123344566788999999999999999999999998877765 565 67777
Q ss_pred eCCcc
Q 015894 299 FHDTY 303 (398)
Q Consensus 299 ~Hnd~ 303 (398)
|....
T Consensus 93 C~sG~ 97 (110)
T PF04273_consen 93 CRSGT 97 (110)
T ss_dssp -SCSH
T ss_pred CCCCh
Confidence 66543
No 496
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.07 E-value=39 Score=32.08 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=81.8
Q ss_pred HHHHHHHhcC--CCEEEEec--CCCCCcccCCCCHHHHHHHHHhccCCcEEE------EeCCH-hhHHHHHHcCCCEEEE
Q 015894 123 ELIKLLVSSG--LAVVEATS--FVSPKWVPQLADAKDVMAAIQNVEGARFPV------LTPNL-KGFEAAVAAGAKEVAI 191 (398)
Q Consensus 123 ~ia~~L~~aG--v~~IEvG~--~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~------l~~n~-~~ie~a~~~Gv~~v~i 191 (398)
+.++.+.++| +..+++|. |++ + - .+.++.+++. +..+.. +..+. ..++.+.++|++.+.+
T Consensus 16 ~~l~~~~~~~~~~~~ikvg~~~f~~--~-----G-~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itv 86 (230)
T PRK00230 16 EALAFLDQLDPAVLFVKVGMELFTA--G-----G-PQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNV 86 (230)
T ss_pred HHHHHHHhcCCcccEEEEcHHHHHh--c-----C-HHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEE
Confidence 3444555555 67899985 332 1 1 1344455533 222211 22233 3467788999999888
Q ss_pred eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCC----CCCC-HHHHHHHHHHHHhCCCCE
Q 015894 192 FASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVE----GMVP-PSKVAYVSKQLYDMGCSE 264 (398)
Q Consensus 192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~----~r~~-~~~l~~~a~~l~~~Gad~ 264 (398)
.....+ +.++.+++.+++. +..+.+.+....+..+. ...+ .+.+..+++.+.+.|++.
T Consensus 87 H~~ag~---------------~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dg 151 (230)
T PRK00230 87 HASGGP---------------RMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDG 151 (230)
T ss_pred cccCCH---------------HHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeE
Confidence 654332 3344445555543 34454444432211000 0111 245556777788889987
Q ss_pred EEEccCcCcCCHHHHHHHHHHHHhhC--------CCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894 265 ISLGDTIGVGTPGTVIPMLEAVLDAV--------PVDKLAVHFHDTYGQALSNILASLQMGISTV 321 (398)
Q Consensus 265 I~L~DT~G~~~P~~v~~lv~~l~~~~--------p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V 321 (398)
+... |.+ +..+|+.+ |+++.. -...+..--+...-.|+++|++.|
T Consensus 152 vv~~-------~~~----~~~ir~~~~~~~~~v~pGI~~~-g~~~~dq~~~~~~~~ai~~Gad~i 204 (230)
T PRK00230 152 VVCS-------AQE----AAAIREATGPDFLLVTPGIRPA-GSDAGDQKRVMTPAQAIAAGSDYI 204 (230)
T ss_pred EEeC-------hHH----HHHHHhhcCCceEEEcCCcCCC-CCCcchHHHHhCHHHHHHcCCCEE
Confidence 6443 222 23333332 443310 111133334557788889999977
No 497
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=84.04 E-value=5.9 Score=39.88 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEcc-CcCcCCHHH--------HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894 248 SKVAYVSKQLYDMGCSEISLGD-TIGVGTPGT--------VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318 (398)
Q Consensus 248 ~~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~--------v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa 318 (398)
+.+.++++...++|++.|.+.| +.+.++|.. ..+++..+++..|+.++-.|+.++..+ .-.-.+.|+
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~----~~~~~~~~~ 261 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGEL----LEAMAETGA 261 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH----HHHHHhcCC
Q ss_pred CEEee
Q 015894 319 STVDS 323 (398)
Q Consensus 319 ~~VD~ 323 (398)
+.+..
T Consensus 262 ~~is~ 266 (346)
T PRK00115 262 DVVGL 266 (346)
T ss_pred CEEee
No 498
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=83.87 E-value=39 Score=31.84 Aligned_cols=150 Identities=14% Similarity=0.205 Sum_probs=88.6
Q ss_pred CHhhHHHHHHcCC-CEEEEeccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 174 NLKGFEAAVAAGA-KEVAIFASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 174 n~~~ie~a~~~Gv-~~v~i~~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
+.+.++.+.+.|. +. +.+||....+. +. +.++.+..+.+.+ ...|.+.+ ++ .+.+...
T Consensus 8 ~~~ei~~~~~~~~i~G----vTTNPsll~k~-~~~~~~~~~~~i~~~~------~~~v~~qv---~~------~~~e~~i 67 (211)
T cd00956 8 DLEEIKKASETGLLDG----VTTNPSLIAKS-GRIDFEAVLKEICEII------DGPVSAQV---VS------TDAEGMV 67 (211)
T ss_pred CHHHHHHHHhcCCcCc----cccCHHHHHhc-CCcCHHHHHHHHHHhc------CCCEEEEE---Ee------CCHHHHH
Confidence 4566777777663 32 34577666542 44 5555555444433 12333222 11 4678888
Q ss_pred HHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894 252 YVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330 (398)
Q Consensus 252 ~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe 330 (398)
+.++.+.+. |--.|-|+=|. .-.+.++.|++. +++++-+.=+....+++|.++||++|---++=+-.
T Consensus 68 ~~a~~l~~~~~~~~iKIP~T~------~gl~ai~~L~~~------gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~ 135 (211)
T cd00956 68 AEARKLASLGGNVVVKIPVTE------DGLKAIKKLSEE------GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDD 135 (211)
T ss_pred HHHHHHHHhCCCEEEEEcCcH------hHHHHHHHHHHc------CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhh
Confidence 889988887 43345566543 333445555543 33444455567788999999999998777766543
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCCCcc
Q 015894 331 CPYAKGASGNVATEDVVYMLNGLGVRTNV 359 (398)
Q Consensus 331 cp~a~graGNa~lE~vv~~L~~~Gi~t~i 359 (398)
.|..|..-++++...++.+|+++.+
T Consensus 136 ----~g~dg~~~i~~i~~~~~~~~~~tki 160 (211)
T cd00956 136 ----LGGDGMELIREIRTIFDNYGFDTKI 160 (211)
T ss_pred ----cCCCHHHHHHHHHHHHHHcCCCceE
Confidence 1235555556777777777776544
No 499
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=83.81 E-value=23 Score=32.66 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=80.8
Q ss_pred CCHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894 173 PNLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA 251 (398)
Q Consensus 173 ~n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~ 251 (398)
++.++++.+.+.|++.|.+-. ..|+.+. + ++.++++.+.++..-..|-+.+. -+++.+.
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v------~----~~~a~~l~~~~~~~~~~V~v~vn----------~~~~~i~ 66 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYV------S----PEQAREIVAALPPFVKRVGVFVN----------EDLEEIL 66 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCC------C----HHHHHHHHHhCCCCCcEEEEEeC----------CCHHHHH
Confidence 467789999999999998854 3333221 1 34445555555442122321111 1345544
Q ss_pred HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCe--EEEEeCCccchHHHHHHHHHHhCCCEE--eeccc
Q 015894 252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQMGISTV--DSSVS 326 (398)
Q Consensus 252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~--l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~ 326 (398)
++ +.+.|+|.|-|-..- .|. .++.+++.++ ..- ++++.|++.. ...+...|++++ |+..-
T Consensus 67 ~i---a~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~~~i~~i~~~~~~~~~-----~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 67 EI---AEELGLDVVQLHGDE---SPE----YCAQLRARLGLPVIKAIRVKDEEDLE-----KAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred HH---HHhcCCCEEEECCCC---CHH----HHHHHHhhcCCcEEEEEecCChhhHH-----HhhhccccCCEEEEcCCCC
Confidence 44 557899999997542 333 4555565543 223 4444444422 245566788855 66544
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHH-hC--CCCCccChHHHHHHHH
Q 015894 327 GLGGCPYAKGASGNVATEDVVYMLN-GL--GVRTNVDIRKLMIAGD 369 (398)
Q Consensus 327 GlGecp~a~graGNa~lE~vv~~L~-~~--Gi~t~iDl~~L~~~~~ 369 (398)
+.++ ++|.+---+++..+. .. -+--|++.+.+.++.+
T Consensus 132 ~~~G------g~g~~~~~~~l~~~~~~~PvilaGGI~~~Nv~~~i~ 171 (203)
T cd00405 132 GGGG------GTGKTFDWSLLRGLASRKPVILAGGLTPDNVAEAIR 171 (203)
T ss_pred CCCC------CCcceEChHHhhccccCCCEEEECCCChHHHHHHHH
Confidence 4333 455543333333332 11 1112567766666554
No 500
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=83.80 E-value=41 Score=34.11 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCC------CCCcccCCCCHHHHHHHHHhcc-CCcEEEEe---C------CHhh--
Q 015894 116 VPAVVKVELIKLLVSSGLAVVEATSFV------SPKWVPQLADAKDVMAAIQNVE-GARFPVLT---P------NLKG-- 177 (398)
Q Consensus 116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~------~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~---~------n~~~-- 177 (398)
+.+.--..-++.++++|+|.|-+|... .++-.| -+.++++.-++.+. ++....++ + +.++
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~--Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av 116 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLP--ITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAV 116 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCC--cCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHH
Confidence 333334567889999999999998421 122222 24556665554332 22222211 2 2222
Q ss_pred --HHHH-HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee------ecC-CCCCCCC-
Q 015894 178 --FEAA-VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV------VGC-PVEGMVP- 246 (398)
Q Consensus 178 --ie~a-~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~------fg~-~~~~r~~- 246 (398)
..+. .+.|++-|.+-... ....+.|+...+.|+.|.++|-.. +|. -.-++..
T Consensus 117 ~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~ 179 (332)
T PLN02424 117 ESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAE 179 (332)
T ss_pred HHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHH
Confidence 2233 56899999996441 112355666678999998666532 111 1122321
Q ss_pred -HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894 247 -PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP 291 (398)
Q Consensus 247 -~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p 291 (398)
...+.+-++.+.++||..|.|.= .|..+.. .+-+.++
T Consensus 180 ~a~~li~dA~ale~AGAf~ivLE~-----Vp~~la~---~It~~l~ 217 (332)
T PLN02424 180 SAVKVVETALALQEAGCFAVVLEC-----VPAPVAA---AITSALQ 217 (332)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcC-----CcHHHHH---HHHHhCC
Confidence 23666778888999999999864 6766444 4444443
Done!