RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015894
(398 letters)
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 146 bits (369), Expect = 1e-41
Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 25/281 (8%)
Query: 95 PGFVKIVEVGPRDGLQN-EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
P V I E+ RD Q+ + V + ++G VE + + +
Sbjct: 8 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67
Query: 154 KDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLI 213
+ L + + + + ++ ++ + E+ +
Sbjct: 68 DPWERLRTFRKLMPNSRL---------QMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD 118
Query: 214 RYR--------DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265
+R A + + + + ++ QL DMG I
Sbjct: 119 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSI 178
Query: 266 SLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324
+L D + P +++A+ D ++ +H H T G +++ +++ G+ VD++
Sbjct: 179 ALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTA 238
Query: 325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLM 365
+S + P G+ TE V ML G G TN+D +L
Sbjct: 239 ISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRLH 273
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 140 bits (352), Expect = 4e-39
Identities = 43/300 (14%), Positives = 80/300 (26%), Gaps = 19/300 (6%)
Query: 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMA 158
V RDG Q + + K + LLV G +E S + + + A
Sbjct: 14 WCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDFDFVREIIEQGA 73
Query: 159 AIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES---------FSKSNINCTIE 209
+V P L +GA + S S +++ +
Sbjct: 74 IPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIAT 133
Query: 210 DSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269
D + + A G +E +L
Sbjct: 134 DGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPA 193
Query: 270 TIGVGTPGTVIPMLEAVLDAVPVDKLA---VHFHDTYGQALSNILASLQMGISTVDSSVS 326
T+ + TP +E + + + +H H+ G A++ G ++ +
Sbjct: 194 TVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLF 253
Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
G G +GNV + L GV +D + + +
Sbjct: 254 GNG------ERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYG 307
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 103 bits (258), Expect = 5e-26
Identities = 53/289 (18%), Positives = 103/289 (35%), Gaps = 37/289 (12%)
Query: 98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK------WVPQLA 151
+ I +V RDG ++ + + L + + +E + +
Sbjct: 8 LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67
Query: 152 DAKDVMAAIQNVEGARFPVL----TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCT 207
D + + A + A+ L ++ + A AGA+ V + +E+
Sbjct: 68 DLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEY 127
Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
AR L + G+L M+P K+A K + G + I +
Sbjct: 128 --------------ARNLGMDTVGFLMM------SHMIPAEKLAEQGKLMESYGATCIYM 167
Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKL-AVHFHDTYGQALSNILASLQMGISTVDSSVS 326
D+ G + + + A + + +H H ++N + +++ G VD+S++
Sbjct: 168 ADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLA 227
Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375
G+G GN E + + LG D+ LM A D I + L
Sbjct: 228 GMGAGA------GNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPL 270
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA
{Vibrio harveyi [TaxId: 669]}
Length = 355
Score = 35.6 bits (80), Expect = 0.009
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316
VGTP I +++ +DA +D + F + I+AS+++
Sbjct: 301 VGTPEECIAIIQQDIDATGIDNICCGFE--ANGSEEEIIASMKL 342
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio
harveyi [TaxId: 669]}
Length = 320
Score = 34.6 bits (78), Expect = 0.017
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316
+GT ++ L + F +A A + +
Sbjct: 273 IGTYEESTQAARVAIECCGAADLLMSFESMEDKA--QQRAVIDV 314
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta,
aIF2beta, N-terminal domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 98
Score = 27.0 bits (60), Expect = 1.5
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 348 YMLNGLGVRTNVDIRKLMIAGDFICKHL 375
++L LG N++ + ++ G F +
Sbjct: 61 FLLRELGTAGNLEGGRAILQGKFTHFLI 88
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 27.6 bits (60), Expect = 2.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 352 GLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTA 384
G GV+ V+I++ G F+ ++LG S+ A
Sbjct: 136 GWGVKCPVNIKR----GQFVDRYLGEIITSEEA 164
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli
[TaxId: 562]}
Length = 112
Score = 26.0 bits (57), Expect = 3.9
Identities = 11/60 (18%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 241 VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPML---EAVLDAVPVDKLAV 297
++ ++ P K+ V + L ++G + +++ + G G + E ++D +P K+ +
Sbjct: 4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEI 63
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 167
Score = 25.3 bits (55), Expect = 9.6
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 267 LGDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDT 302
+ + + P + I +LEA L + V + H
Sbjct: 12 IDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRH 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.365
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,315,337
Number of extensions: 57969
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 10
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)