Query 015895
Match_columns 398
No_of_seqs 261 out of 2302
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02306 hydroxypyruvate reduc 100.0 1.2E-78 2.7E-83 610.7 40.2 381 1-381 1-381 (386)
2 KOG0068 D-3-phosphoglycerate d 100.0 6.3E-78 1.4E-82 575.3 28.5 345 17-392 8-355 (406)
3 COG0111 SerA Phosphoglycerate 100.0 2E-74 4.3E-79 568.1 33.0 312 13-351 1-313 (324)
4 TIGR01327 PGDH D-3-phosphoglyc 100.0 4.2E-73 9E-78 593.3 36.4 344 17-390 1-344 (525)
5 PRK15409 bifunctional glyoxyla 100.0 7E-72 1.5E-76 551.3 36.4 317 14-354 1-319 (323)
6 PRK13581 D-3-phosphoglycerate 100.0 4.2E-72 9.1E-77 585.8 35.6 344 16-390 1-345 (526)
7 COG1052 LdhA Lactate dehydroge 100.0 4.8E-71 1E-75 543.6 34.8 317 14-354 1-322 (324)
8 PRK11790 D-3-phosphoglycerate 100.0 1.4E-70 2.9E-75 557.9 33.0 322 9-361 4-331 (409)
9 PRK13243 glyoxylate reductase; 100.0 2.5E-69 5.5E-74 535.7 36.4 318 14-354 1-322 (333)
10 PRK08410 2-hydroxyacid dehydro 100.0 9.5E-69 2.1E-73 527.0 33.7 302 16-348 1-311 (311)
11 PRK06487 glycerate dehydrogena 100.0 1.7E-68 3.6E-73 526.6 34.9 303 17-349 2-313 (317)
12 PRK06932 glycerate dehydrogena 100.0 3.6E-67 7.8E-72 516.3 32.6 274 50-348 33-314 (314)
13 PRK07574 formate dehydrogenase 100.0 1.6E-65 3.4E-70 514.8 33.8 301 31-353 62-366 (385)
14 PLN03139 formate dehydrogenase 100.0 1.9E-65 4.1E-70 513.9 34.3 300 30-350 68-370 (386)
15 PLN02928 oxidoreductase family 100.0 1.2E-64 2.6E-69 504.5 35.4 323 10-351 13-342 (347)
16 PRK12480 D-lactate dehydrogena 100.0 6.9E-64 1.5E-68 495.9 33.9 313 16-354 2-330 (330)
17 PRK08605 D-lactate dehydrogena 100.0 2.2E-63 4.7E-68 493.2 34.2 317 14-354 2-332 (332)
18 KOG0069 Glyoxylate/hydroxypyru 100.0 5.1E-62 1.1E-66 475.5 25.9 298 37-353 36-334 (336)
19 PRK15438 erythronate-4-phospha 100.0 2.4E-59 5.2E-64 468.3 30.2 278 16-349 1-282 (378)
20 PRK00257 erythronate-4-phospha 100.0 1.2E-58 2.6E-63 464.4 30.0 283 16-353 1-287 (381)
21 PRK15469 ghrA bifunctional gly 100.0 2.6E-58 5.5E-63 452.8 31.2 296 17-354 2-307 (312)
22 PRK06436 glycerate dehydrogena 100.0 3E-57 6.5E-62 443.1 30.8 286 16-354 1-289 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 5.5E-48 1.2E-52 351.1 16.6 177 128-322 1-178 (178)
24 KOG0067 Transcription factor C 100.0 2.3E-32 4.9E-37 264.9 12.4 280 50-354 61-349 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 4.9E-21 1.1E-25 195.7 16.2 170 93-306 198-368 (476)
26 PF00389 2-Hacid_dh: D-isomer 99.9 2.3E-20 5E-25 161.5 15.8 101 18-127 1-101 (133)
27 TIGR02853 spore_dpaA dipicolin 99.8 1.6E-19 3.6E-24 175.9 17.4 200 29-275 16-243 (287)
28 PRK08306 dipicolinate synthase 99.7 6.5E-15 1.4E-19 144.3 20.1 196 29-274 17-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 1.8E-15 3.9E-20 154.7 10.4 122 161-303 250-374 (477)
30 TIGR00936 ahcY adenosylhomocys 99.6 3.3E-14 7.2E-19 144.1 18.9 121 161-301 191-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 1.3E-13 2.7E-18 135.0 9.8 93 161-270 12-104 (335)
32 PRK05476 S-adenosyl-L-homocyst 99.5 3.1E-12 6.8E-17 130.5 20.2 155 93-284 156-312 (425)
33 PF03446 NAD_binding_2: NAD bi 99.4 1.9E-12 4.2E-17 115.9 10.4 116 166-298 2-118 (163)
34 COG2084 MmsB 3-hydroxyisobutyr 99.4 5.3E-12 1.1E-16 122.3 12.3 124 166-303 1-126 (286)
35 PF00670 AdoHcyase_NAD: S-aden 99.3 1.3E-11 2.9E-16 109.8 10.6 103 161-283 19-122 (162)
36 TIGR01505 tartro_sem_red 2-hyd 99.3 3.6E-11 7.7E-16 117.3 12.2 111 167-292 1-113 (291)
37 PRK11559 garR tartronate semia 99.3 4.4E-11 9.5E-16 116.9 12.4 123 166-303 3-127 (296)
38 cd00401 AdoHcyase S-adenosyl-L 99.2 3.7E-10 7.9E-15 115.1 18.4 105 160-284 197-302 (413)
39 PRK15461 NADH-dependent gamma- 99.2 1.2E-10 2.6E-15 114.2 12.1 112 166-292 2-115 (296)
40 PRK12490 6-phosphogluconate de 99.2 1.5E-10 3.3E-15 113.6 12.7 114 166-297 1-117 (299)
41 PRK09599 6-phosphogluconate de 99.1 7.2E-10 1.5E-14 108.9 12.5 111 166-292 1-114 (301)
42 PLN02350 phosphogluconate dehy 99.1 1.2E-09 2.6E-14 113.8 13.2 128 167-303 8-138 (493)
43 PLN02712 arogenate dehydrogena 99.1 1.4E-09 3.1E-14 117.3 13.3 113 159-288 363-476 (667)
44 PRK05479 ketol-acid reductoiso 99.0 8.5E-10 1.9E-14 109.3 9.9 119 161-304 13-131 (330)
45 PRK15059 tartronate semialdehy 99.0 3E-09 6.4E-14 104.2 12.4 110 166-291 1-112 (292)
46 PLN02256 arogenate dehydrogena 99.0 1.9E-08 4E-13 99.2 16.7 109 163-288 34-143 (304)
47 PLN02858 fructose-bisphosphate 98.9 4.8E-09 1.1E-13 121.0 13.0 120 164-298 3-124 (1378)
48 PTZ00142 6-phosphogluconate de 98.9 7E-09 1.5E-13 107.8 12.9 128 166-303 2-132 (470)
49 TIGR00872 gnd_rel 6-phosphoglu 98.9 9.4E-09 2E-13 100.9 12.6 110 166-292 1-113 (298)
50 PLN02858 fructose-bisphosphate 98.9 6.5E-09 1.4E-13 120.0 12.6 109 165-288 324-434 (1378)
51 KOG0409 Predicted dehydrogenas 98.9 5.4E-09 1.2E-13 100.7 9.7 114 162-290 32-148 (327)
52 COG0499 SAM1 S-adenosylhomocys 98.9 4.8E-08 1E-12 96.1 14.6 193 162-393 206-404 (420)
53 TIGR01692 HIBADH 3-hydroxyisob 98.9 1.3E-08 2.9E-13 99.2 10.7 111 170-297 1-113 (288)
54 TIGR00873 gnd 6-phosphoglucona 98.9 2.4E-08 5.1E-13 103.8 12.9 126 167-303 1-129 (467)
55 PRK08655 prephenate dehydrogen 98.8 4.3E-08 9.2E-13 101.3 14.5 134 166-321 1-137 (437)
56 PRK14194 bifunctional 5,10-met 98.8 1.2E-07 2.6E-12 92.8 16.6 168 33-275 58-234 (301)
57 TIGR00465 ilvC ketol-acid redu 98.8 1.9E-08 4E-13 99.5 10.2 98 163-277 1-98 (314)
58 PRK07066 3-hydroxybutyryl-CoA 98.8 7.4E-08 1.6E-12 95.5 14.3 120 166-288 8-133 (321)
59 PLN02545 3-hydroxybutyryl-CoA 98.8 1.2E-07 2.7E-12 92.7 15.5 118 166-288 5-133 (295)
60 PRK07417 arogenate dehydrogena 98.8 9.9E-08 2.1E-12 92.8 14.5 94 166-275 1-94 (279)
61 PRK07502 cyclohexadienyl dehyd 98.8 1.5E-07 3.2E-12 92.7 14.5 142 164-323 5-155 (307)
62 PRK14189 bifunctional 5,10-met 98.7 3.9E-07 8.4E-12 88.6 16.5 169 32-275 56-233 (285)
63 PRK14619 NAD(P)H-dependent gly 98.7 3.8E-08 8.2E-13 97.0 9.7 82 164-275 3-85 (308)
64 PRK06545 prephenate dehydrogen 98.7 2.1E-07 4.4E-12 93.8 14.4 138 166-322 1-149 (359)
65 PRK15182 Vi polysaccharide bio 98.7 1.6E-07 3.4E-12 96.8 13.7 140 166-317 7-173 (425)
66 PRK14188 bifunctional 5,10-met 98.7 5.8E-07 1.2E-11 88.0 16.8 169 32-275 56-233 (296)
67 PRK05225 ketol-acid reductoiso 98.7 3E-08 6.5E-13 101.1 7.7 99 153-269 22-128 (487)
68 PLN02712 arogenate dehydrogena 98.7 8.7E-08 1.9E-12 103.6 11.7 109 162-287 49-158 (667)
69 PRK09260 3-hydroxybutyryl-CoA 98.7 4E-07 8.6E-12 88.8 14.7 128 166-299 2-141 (288)
70 PRK08818 prephenate dehydrogen 98.7 5.4E-07 1.2E-11 90.9 15.6 123 163-320 2-130 (370)
71 COG0287 TyrA Prephenate dehydr 98.7 4.5E-07 9.7E-12 88.3 14.4 137 165-322 3-146 (279)
72 PF03807 F420_oxidored: NADP o 98.7 1.4E-07 3E-12 76.4 9.2 92 167-274 1-96 (96)
73 PRK08293 3-hydroxybutyryl-CoA 98.7 1.4E-06 3E-11 85.0 17.9 152 166-329 4-166 (287)
74 PRK11199 tyrA bifunctional cho 98.7 9.8E-07 2.1E-11 89.4 17.2 121 120-285 67-188 (374)
75 PRK14179 bifunctional 5,10-met 98.7 6.8E-07 1.5E-11 86.9 15.3 170 31-275 55-233 (284)
76 PLN02688 pyrroline-5-carboxyla 98.6 6.8E-07 1.5E-11 85.9 14.1 103 166-287 1-108 (266)
77 PRK11064 wecC UDP-N-acetyl-D-m 98.6 6.3E-07 1.4E-11 92.0 14.3 109 166-288 4-135 (415)
78 PRK07679 pyrroline-5-carboxyla 98.6 5.8E-07 1.3E-11 87.3 12.6 107 164-287 2-112 (279)
79 TIGR00518 alaDH alanine dehydr 98.6 1.9E-07 4E-12 94.6 9.2 102 162-272 164-267 (370)
80 PF07991 IlvN: Acetohydroxy ac 98.6 2.9E-07 6.2E-12 81.9 8.6 95 163-274 2-96 (165)
81 PRK14175 bifunctional 5,10-met 98.5 3.8E-06 8.3E-11 81.8 17.1 168 33-275 57-233 (286)
82 PRK07530 3-hydroxybutyryl-CoA 98.5 3.2E-06 6.8E-11 82.6 16.6 128 166-300 5-144 (292)
83 PRK13302 putative L-aspartate 98.5 3.9E-07 8.4E-12 88.4 10.1 110 165-291 6-117 (271)
84 PRK05808 3-hydroxybutyryl-CoA 98.5 4.7E-06 1E-10 81.0 17.2 119 166-288 4-132 (282)
85 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 6.7E-07 1.4E-11 83.0 10.7 110 160-291 23-133 (200)
86 PRK12491 pyrroline-5-carboxyla 98.5 7.6E-07 1.6E-11 86.4 10.8 104 166-287 3-110 (272)
87 TIGR00561 pntA NAD(P) transhyd 98.5 1.6E-05 3.5E-10 83.2 21.0 227 29-273 21-285 (511)
88 PRK07819 3-hydroxybutyryl-CoA 98.5 2.8E-06 6.1E-11 83.0 14.3 130 166-300 6-146 (286)
89 TIGR03026 NDP-sugDHase nucleot 98.5 3.6E-06 7.9E-11 86.3 15.5 117 166-286 1-134 (411)
90 KOG1370 S-adenosylhomocysteine 98.5 5.8E-07 1.3E-11 86.7 8.6 95 162-276 211-305 (434)
91 PRK08507 prephenate dehydrogen 98.4 2.4E-06 5.1E-11 82.8 12.8 101 166-288 1-103 (275)
92 cd01065 NAD_bind_Shikimate_DH 98.4 1.8E-06 4E-11 75.7 10.8 114 162-290 16-132 (155)
93 PRK14618 NAD(P)H-dependent gly 98.4 2E-06 4.3E-11 85.4 11.8 115 165-288 4-123 (328)
94 PRK08268 3-hydroxy-acyl-CoA de 98.4 4.4E-06 9.6E-11 87.9 14.8 131 166-302 8-149 (507)
95 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 1.2E-06 2.7E-11 79.0 8.6 82 161-278 40-122 (168)
96 PRK06129 3-hydroxyacyl-CoA deh 98.4 1.9E-05 4.1E-10 77.9 17.7 146 166-322 3-158 (308)
97 PRK07531 bifunctional 3-hydrox 98.4 6.7E-06 1.5E-10 86.4 15.3 131 166-301 5-141 (495)
98 PRK00094 gpsA NAD(P)H-dependen 98.4 2.3E-06 4.9E-11 84.4 10.5 105 166-275 2-108 (325)
99 PRK15057 UDP-glucose 6-dehydro 98.4 4.2E-06 9.2E-11 85.2 12.5 141 166-317 1-160 (388)
100 PRK14191 bifunctional 5,10-met 98.3 1.6E-05 3.5E-10 77.3 15.8 168 33-275 56-232 (285)
101 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 8.7E-06 1.9E-10 85.6 15.0 131 166-303 6-148 (503)
102 PRK14806 bifunctional cyclohex 98.3 5.7E-06 1.2E-10 90.8 14.0 138 166-323 4-153 (735)
103 PRK06130 3-hydroxybutyryl-CoA 98.3 1.4E-05 3E-10 78.7 15.3 119 166-288 5-129 (311)
104 PRK10792 bifunctional 5,10-met 98.3 3.7E-05 8.1E-10 74.8 17.4 168 32-274 57-233 (285)
105 PRK14176 bifunctional 5,10-met 98.3 3E-05 6.5E-10 75.5 16.6 167 33-274 63-238 (287)
106 PRK14178 bifunctional 5,10-met 98.3 2.4E-05 5.2E-10 75.9 15.8 168 33-275 51-227 (279)
107 PF01488 Shikimate_DH: Shikima 98.3 1.7E-06 3.6E-11 75.2 7.1 104 162-277 9-114 (135)
108 TIGR01724 hmd_rel H2-forming N 98.3 4.1E-06 8.9E-11 82.2 10.4 98 177-288 32-129 (341)
109 PRK06035 3-hydroxyacyl-CoA deh 98.3 9.2E-06 2E-10 79.4 12.9 130 166-300 4-146 (291)
110 PRK06928 pyrroline-5-carboxyla 98.3 9.1E-06 2E-10 79.0 12.2 106 166-287 2-111 (277)
111 COG1023 Gnd Predicted 6-phosph 98.3 1E-05 2.2E-10 76.0 11.7 116 166-299 1-119 (300)
112 PF02737 3HCDH_N: 3-hydroxyacy 98.3 1.3E-05 2.8E-10 73.1 12.1 146 167-322 1-156 (180)
113 PRK14190 bifunctional 5,10-met 98.2 7E-05 1.5E-09 73.0 17.1 169 32-275 56-233 (284)
114 PRK06476 pyrroline-5-carboxyla 98.2 7.8E-06 1.7E-10 78.4 9.4 105 166-289 1-108 (258)
115 PRK05472 redox-sensing transcr 98.2 1.7E-06 3.8E-11 80.8 4.6 134 121-288 61-201 (213)
116 PRK07680 late competence prote 98.2 2E-05 4.3E-10 76.3 11.9 105 166-287 1-109 (273)
117 PRK09287 6-phosphogluconate de 98.2 1.5E-05 3.3E-10 82.8 11.7 117 176-303 1-120 (459)
118 PF01210 NAD_Gly3P_dh_N: NAD-d 98.2 1.4E-05 3E-10 71.2 9.8 104 167-275 1-106 (157)
119 PRK09424 pntA NAD(P) transhydr 98.1 0.00024 5.2E-09 74.7 19.9 227 29-273 22-286 (509)
120 PF10727 Rossmann-like: Rossma 98.1 7E-06 1.5E-10 70.7 6.4 93 164-272 9-104 (127)
121 PRK13304 L-aspartate dehydroge 98.1 1.7E-05 3.6E-10 76.8 9.7 107 166-290 2-113 (265)
122 PRK14183 bifunctional 5,10-met 98.1 0.00016 3.4E-09 70.3 16.2 168 33-275 56-232 (281)
123 PRK14173 bifunctional 5,10-met 98.1 0.00019 4.1E-09 70.0 16.6 169 33-276 54-231 (287)
124 COG2085 Predicted dinucleotide 98.0 3.2E-05 6.9E-10 71.7 10.1 94 166-274 2-95 (211)
125 PF01262 AlaDh_PNT_C: Alanine 98.0 1.5E-05 3.2E-10 71.8 7.7 111 161-273 16-140 (168)
126 PRK14169 bifunctional 5,10-met 98.0 0.00027 5.8E-09 68.8 16.8 168 33-275 55-231 (282)
127 PRK07634 pyrroline-5-carboxyla 98.0 5.8E-05 1.3E-09 71.5 11.7 108 164-289 3-114 (245)
128 PRK14172 bifunctional 5,10-met 98.0 0.00034 7.4E-09 67.9 16.7 167 33-274 57-232 (278)
129 PLN00203 glutamyl-tRNA reducta 98.0 2.5E-05 5.5E-10 82.2 9.3 102 162-275 263-372 (519)
130 PRK14170 bifunctional 5,10-met 98.0 0.00053 1.2E-08 66.8 17.6 168 33-275 56-232 (284)
131 TIGR01546 GAPDH-II_archae glyc 98.0 3.5E-05 7.5E-10 76.7 9.4 102 168-272 1-108 (333)
132 TIGR01035 hemA glutamyl-tRNA r 98.0 1.8E-05 3.9E-10 81.4 7.5 102 162-278 177-283 (417)
133 PF03721 UDPG_MGDP_dh_N: UDP-g 97.9 6.1E-05 1.3E-09 69.0 10.2 149 166-317 1-171 (185)
134 PRK11880 pyrroline-5-carboxyla 97.9 4E-05 8.6E-10 73.7 9.3 102 166-287 3-107 (267)
135 PRK14177 bifunctional 5,10-met 97.9 0.00044 9.5E-09 67.4 16.4 169 31-274 56-233 (284)
136 PRK14166 bifunctional 5,10-met 97.9 0.00053 1.2E-08 66.7 16.6 168 33-274 55-231 (282)
137 PF02882 THF_DHG_CYH_C: Tetrah 97.9 3.4E-05 7.5E-10 69.0 7.6 81 160-276 31-112 (160)
138 PRK14193 bifunctional 5,10-met 97.9 0.00058 1.3E-08 66.5 16.6 168 33-275 57-235 (284)
139 PRK14174 bifunctional 5,10-met 97.9 0.00051 1.1E-08 67.4 16.2 170 33-275 56-238 (295)
140 PRK14186 bifunctional 5,10-met 97.9 0.00062 1.3E-08 66.8 16.6 169 32-275 56-233 (297)
141 cd05191 NAD_bind_amino_acid_DH 97.9 8E-05 1.7E-09 59.4 8.6 67 161-272 19-86 (86)
142 PRK14181 bifunctional 5,10-met 97.9 0.00097 2.1E-08 65.1 17.7 169 33-275 51-232 (287)
143 COG0686 Ald Alanine dehydrogen 97.9 2.2E-05 4.8E-10 76.4 6.2 102 162-272 165-268 (371)
144 PRK14171 bifunctional 5,10-met 97.9 0.00078 1.7E-08 65.8 16.8 169 32-274 56-233 (288)
145 PTZ00431 pyrroline carboxylate 97.9 7.2E-05 1.6E-09 72.0 9.4 97 165-287 3-103 (260)
146 TIGR01915 npdG NADPH-dependent 97.8 0.00014 2.9E-09 68.2 10.8 104 166-276 1-105 (219)
147 cd05213 NAD_bind_Glutamyl_tRNA 97.8 6.8E-05 1.5E-09 74.2 9.2 98 163-274 176-275 (311)
148 PLN02616 tetrahydrofolate dehy 97.8 0.00095 2.1E-08 66.8 17.2 169 32-275 127-306 (364)
149 PRK14184 bifunctional 5,10-met 97.8 0.00073 1.6E-08 65.9 15.9 167 32-273 55-234 (286)
150 PRK08229 2-dehydropantoate 2-r 97.8 0.00013 2.9E-09 72.5 11.1 120 166-293 3-127 (341)
151 PLN02516 methylenetetrahydrofo 97.8 0.00058 1.3E-08 67.0 15.1 169 33-275 64-242 (299)
152 TIGR02371 ala_DH_arch alanine 97.8 8.3E-05 1.8E-09 74.1 9.5 96 165-274 128-224 (325)
153 PLN02897 tetrahydrofolate dehy 97.8 0.00083 1.8E-08 66.9 16.1 170 33-275 111-289 (345)
154 cd05311 NAD_bind_2_malic_enz N 97.8 0.00022 4.8E-09 67.4 11.5 161 161-345 21-196 (226)
155 PRK14180 bifunctional 5,10-met 97.8 0.00078 1.7E-08 65.6 15.4 168 33-274 56-232 (282)
156 PRK06141 ornithine cyclodeamin 97.8 9.1E-05 2E-09 73.4 9.2 109 163-286 123-232 (314)
157 cd05212 NAD_bind_m-THF_DH_Cycl 97.8 0.00018 3.9E-09 63.0 9.9 80 160-275 23-103 (140)
158 PRK14192 bifunctional 5,10-met 97.8 0.0001 2.2E-09 72.0 9.2 80 160-275 154-234 (283)
159 COG0345 ProC Pyrroline-5-carbo 97.8 0.00028 6.1E-09 68.1 11.9 104 166-291 2-112 (266)
160 PRK14182 bifunctional 5,10-met 97.8 0.0008 1.7E-08 65.5 15.0 170 32-275 54-232 (282)
161 PRK00045 hemA glutamyl-tRNA re 97.8 6E-05 1.3E-09 77.7 7.5 97 162-273 179-281 (423)
162 PRK14167 bifunctional 5,10-met 97.8 0.0014 3E-08 64.3 16.5 170 32-275 55-236 (297)
163 PRK12921 2-dehydropantoate 2-r 97.7 0.00018 4E-09 70.2 10.2 121 166-293 1-122 (305)
164 COG0190 FolD 5,10-methylene-te 97.7 0.0011 2.3E-08 64.3 15.0 201 32-327 54-263 (283)
165 PRK14187 bifunctional 5,10-met 97.7 0.00097 2.1E-08 65.3 15.0 169 33-275 57-235 (294)
166 KOG2380 Prephenate dehydrogena 97.7 0.00052 1.1E-08 67.7 12.9 134 166-322 53-192 (480)
167 PRK14185 bifunctional 5,10-met 97.7 0.0019 4.1E-08 63.2 16.2 169 32-275 55-236 (293)
168 PLN02353 probable UDP-glucose 97.7 0.0013 2.8E-08 68.8 15.8 148 166-317 2-176 (473)
169 PRK14168 bifunctional 5,10-met 97.7 0.0021 4.7E-08 63.0 16.1 169 33-275 58-240 (297)
170 PRK06522 2-dehydropantoate 2-r 97.6 0.00061 1.3E-08 66.4 12.1 130 166-303 1-132 (304)
171 PRK07340 ornithine cyclodeamin 97.6 0.00024 5.3E-09 70.1 9.2 96 163-274 123-219 (304)
172 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00066 1.4E-08 62.2 11.3 107 161-277 24-134 (194)
173 PRK12557 H(2)-dependent methyl 97.6 0.00045 9.7E-09 69.3 10.6 100 177-287 32-132 (342)
174 PRK14982 acyl-ACP reductase; P 97.5 0.00031 6.8E-09 70.2 8.6 102 159-279 149-253 (340)
175 TIGR02440 FadJ fatty oxidation 97.5 0.002 4.4E-08 70.5 15.5 130 166-300 305-445 (699)
176 cd01079 NAD_bind_m-THF_DH NAD 97.5 0.00053 1.2E-08 63.1 9.1 103 156-273 53-157 (197)
177 PRK11154 fadJ multifunctional 97.5 0.0021 4.5E-08 70.6 15.4 131 166-300 310-450 (708)
178 TIGR02441 fa_ox_alpha_mit fatt 97.5 0.0016 3.4E-08 71.8 14.3 146 166-322 336-492 (737)
179 PRK11730 fadB multifunctional 97.5 0.0024 5.3E-08 70.1 15.5 146 166-322 314-470 (715)
180 TIGR03376 glycerol3P_DH glycer 97.5 0.00078 1.7E-08 67.6 10.7 109 167-277 1-121 (342)
181 PRK08618 ornithine cyclodeamin 97.4 0.00079 1.7E-08 67.0 9.9 97 164-274 126-223 (325)
182 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0012 2.7E-08 62.4 10.6 116 161-292 27-154 (227)
183 PRK00258 aroE shikimate 5-dehy 97.4 0.00047 1E-08 67.1 7.9 76 162-247 120-196 (278)
184 PTZ00345 glycerol-3-phosphate 97.4 0.0012 2.5E-08 66.9 10.9 111 165-278 11-135 (365)
185 PRK06823 ornithine cyclodeamin 97.4 0.00084 1.8E-08 66.6 9.5 95 165-273 128-223 (315)
186 PRK06046 alanine dehydrogenase 97.4 0.00078 1.7E-08 67.1 9.4 95 165-273 129-224 (326)
187 COG0240 GpsA Glycerol-3-phosph 97.4 0.0011 2.5E-08 65.5 10.2 109 166-278 2-111 (329)
188 COG0059 IlvC Ketol-acid reduct 97.4 0.00049 1.1E-08 67.0 7.3 91 162-268 15-105 (338)
189 TIGR02354 thiF_fam2 thiamine b 97.4 0.0012 2.7E-08 61.2 9.7 107 161-270 17-143 (200)
190 COG0362 Gnd 6-phosphogluconate 97.3 0.0077 1.7E-07 60.7 15.4 165 166-351 4-171 (473)
191 PF02423 OCD_Mu_crystall: Orni 97.3 0.00067 1.5E-08 67.2 8.1 99 166-276 129-228 (313)
192 TIGR02437 FadB fatty oxidation 97.3 0.005 1.1E-07 67.7 15.5 146 166-322 314-470 (714)
193 PRK12439 NAD(P)H-dependent gly 97.3 0.0012 2.5E-08 66.2 9.7 104 166-275 8-114 (341)
194 PRK14620 NAD(P)H-dependent gly 97.3 0.0017 3.6E-08 64.4 10.5 105 166-275 1-109 (326)
195 TIGR02992 ectoine_eutC ectoine 97.3 0.0014 3.1E-08 65.2 9.8 96 164-272 128-224 (326)
196 TIGR01470 cysG_Nterm siroheme 97.3 0.0009 1.9E-08 62.3 7.8 95 161-272 5-100 (205)
197 PF02153 PDH: Prephenate dehyd 97.2 0.0033 7.1E-08 60.5 11.6 127 180-322 1-133 (258)
198 PTZ00117 malate dehydrogenase; 97.2 0.0037 8E-08 62.1 12.0 131 163-297 3-151 (319)
199 PRK07589 ornithine cyclodeamin 97.2 0.0019 4.1E-08 65.0 9.7 96 165-272 129-225 (346)
200 PRK06407 ornithine cyclodeamin 97.2 0.0017 3.7E-08 64.1 9.2 96 165-273 117-213 (301)
201 PF13241 NAD_binding_7: Putati 97.2 0.00069 1.5E-08 56.0 5.4 89 162-273 4-92 (103)
202 TIGR00507 aroE shikimate 5-deh 97.2 0.0023 5E-08 61.9 9.9 112 162-289 114-229 (270)
203 TIGR01763 MalateDH_bact malate 97.2 0.0033 7.1E-08 62.1 11.1 128 166-297 2-147 (305)
204 PRK08291 ectoine utilization p 97.2 0.0021 4.6E-08 64.1 9.8 95 164-271 131-226 (330)
205 PRK06249 2-dehydropantoate 2-r 97.1 0.0033 7.1E-08 62.1 10.7 123 165-296 5-129 (313)
206 COG1712 Predicted dinucleotide 97.1 0.0022 4.8E-08 60.1 8.4 98 166-281 1-100 (255)
207 COG2423 Predicted ornithine cy 97.1 0.0031 6.8E-08 62.8 10.1 95 166-273 131-226 (330)
208 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0046 1E-07 58.1 10.6 114 161-290 19-143 (217)
209 PRK06199 ornithine cyclodeamin 97.1 0.0031 6.8E-08 64.1 10.2 100 165-273 155-260 (379)
210 PRK06718 precorrin-2 dehydroge 97.1 0.0026 5.5E-08 59.2 8.7 95 161-272 6-100 (202)
211 TIGR01921 DAP-DH diaminopimela 97.1 0.0023 4.9E-08 63.6 8.7 108 166-293 4-116 (324)
212 PF01118 Semialdhyde_dh: Semia 97.1 0.002 4.3E-08 54.7 7.2 94 167-273 1-98 (121)
213 COG1250 FadB 3-hydroxyacyl-CoA 97.1 0.013 2.9E-07 57.8 13.8 147 165-322 3-160 (307)
214 PRK13301 putative L-aspartate 97.0 0.0046 9.9E-08 59.7 10.1 103 166-288 3-112 (267)
215 PRK13940 glutamyl-tRNA reducta 97.0 0.0037 8E-08 64.3 10.1 96 162-273 178-274 (414)
216 PF01113 DapB_N: Dihydrodipico 97.0 0.0068 1.5E-07 51.8 10.1 110 166-287 1-113 (124)
217 cd00650 LDH_MDH_like NAD-depen 97.0 0.0039 8.5E-08 60.0 9.3 127 168-300 1-150 (263)
218 COG0373 HemA Glutamyl-tRNA red 97.0 0.0021 4.5E-08 65.8 7.5 99 162-275 175-277 (414)
219 COG0677 WecC UDP-N-acetyl-D-ma 96.9 0.0047 1E-07 62.4 9.4 152 166-330 10-189 (436)
220 PRK00676 hemA glutamyl-tRNA re 96.8 0.0039 8.4E-08 62.3 8.1 93 162-275 171-264 (338)
221 PRK09414 glutamate dehydrogena 96.7 0.0093 2E-07 61.8 10.3 120 161-291 228-361 (445)
222 PF01408 GFO_IDH_MocA: Oxidore 96.7 0.0084 1.8E-07 50.0 8.3 107 167-290 2-113 (120)
223 COG1748 LYS9 Saccharopine dehy 96.7 0.0063 1.4E-07 61.9 8.8 111 166-288 2-114 (389)
224 PRK13303 L-aspartate dehydroge 96.7 0.008 1.7E-07 58.2 8.9 107 166-290 2-113 (265)
225 PRK00048 dihydrodipicolinate r 96.7 0.012 2.7E-07 56.5 10.2 66 166-245 2-69 (257)
226 PRK12549 shikimate 5-dehydroge 96.6 0.0079 1.7E-07 58.8 8.6 78 162-246 124-202 (284)
227 PRK09310 aroDE bifunctional 3- 96.6 0.0072 1.6E-07 63.4 8.6 75 160-247 327-401 (477)
228 TIGR02356 adenyl_thiF thiazole 96.6 0.0092 2E-07 55.3 8.4 101 161-263 17-137 (202)
229 PRK12548 shikimate 5-dehydroge 96.6 0.0062 1.3E-07 59.6 7.5 37 162-199 123-160 (289)
230 PLN02477 glutamate dehydrogena 96.6 0.059 1.3E-06 55.4 14.7 117 160-292 201-329 (410)
231 PRK01713 ornithine carbamoyltr 96.5 0.44 9.5E-06 47.8 20.4 107 162-272 153-275 (334)
232 smart00859 Semialdhyde_dh Semi 96.5 0.011 2.3E-07 50.0 7.6 98 167-273 1-100 (122)
233 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.013 2.9E-07 48.5 8.0 84 176-272 18-101 (106)
234 PF00208 ELFV_dehydrog: Glutam 96.5 0.014 3E-07 55.9 9.0 123 162-292 29-165 (244)
235 PRK08269 3-hydroxybutyryl-CoA 96.5 0.034 7.4E-07 55.2 12.1 109 176-287 1-128 (314)
236 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.012 2.7E-07 56.5 8.6 121 161-291 34-171 (254)
237 PRK06223 malate dehydrogenase; 96.5 0.031 6.7E-07 55.0 11.6 128 166-297 3-148 (307)
238 PF00185 OTCace: Aspartate/orn 96.5 0.046 1E-06 48.8 11.6 105 164-272 1-120 (158)
239 PRK06719 precorrin-2 dehydroge 96.4 0.014 2.9E-07 52.1 8.0 43 159-202 7-49 (157)
240 PRK00066 ldh L-lactate dehydro 96.4 0.022 4.9E-07 56.5 10.3 102 164-273 5-123 (315)
241 PTZ00082 L-lactate dehydrogena 96.4 0.027 5.8E-07 56.1 10.8 129 163-295 4-153 (321)
242 COG0026 PurK Phosphoribosylami 96.4 0.0045 9.7E-08 62.0 5.2 68 165-242 1-68 (375)
243 COG0569 TrkA K+ transport syst 96.4 0.0066 1.4E-07 57.3 5.9 77 166-248 1-78 (225)
244 COG1004 Ugd Predicted UDP-gluc 96.4 0.096 2.1E-06 53.2 14.3 154 166-327 1-175 (414)
245 KOG0023 Alcohol dehydrogenase, 96.4 0.011 2.4E-07 58.2 7.5 38 164-202 181-218 (360)
246 COG1648 CysG Siroheme synthase 96.3 0.013 2.8E-07 54.9 7.4 96 161-273 8-104 (210)
247 cd05293 LDH_1 A subgroup of L- 96.2 0.047 1E-06 54.2 11.4 121 166-294 4-144 (312)
248 TIGR00658 orni_carb_tr ornithi 96.2 0.97 2.1E-05 44.7 20.6 105 163-271 146-263 (304)
249 PRK12475 thiamine/molybdopteri 96.2 0.018 3.9E-07 57.8 8.4 98 161-260 20-139 (338)
250 PRK01710 murD UDP-N-acetylmura 96.2 0.034 7.3E-07 57.9 10.7 118 162-288 11-141 (458)
251 COG1064 AdhP Zn-dependent alco 96.2 0.026 5.6E-07 56.4 9.3 37 164-201 166-202 (339)
252 PLN02819 lysine-ketoglutarate 96.2 0.02 4.3E-07 65.1 9.4 75 164-246 568-658 (1042)
253 KOG2304 3-hydroxyacyl-CoA dehy 96.2 0.012 2.6E-07 55.3 6.2 156 162-328 8-180 (298)
254 PRK04207 glyceraldehyde-3-phos 96.1 0.034 7.4E-07 55.8 10.0 80 166-246 2-88 (341)
255 PRK11579 putative oxidoreducta 96.1 0.053 1.2E-06 54.2 11.3 67 166-247 5-75 (346)
256 cd05297 GH4_alpha_glucosidase_ 96.1 0.023 5.1E-07 58.6 8.8 78 166-245 1-83 (423)
257 TIGR00036 dapB dihydrodipicoli 96.1 0.04 8.6E-07 53.4 9.8 112 166-288 2-116 (266)
258 cd05291 HicDH_like L-2-hydroxy 96.1 0.069 1.5E-06 52.6 11.7 109 166-281 1-124 (306)
259 PRK14106 murD UDP-N-acetylmura 96.1 0.079 1.7E-06 54.7 12.6 119 162-288 2-132 (450)
260 COG5322 Predicted dehydrogenas 96.0 0.015 3.3E-07 55.9 6.5 107 159-279 161-268 (351)
261 PRK14031 glutamate dehydrogena 96.0 0.034 7.3E-07 57.6 9.6 120 160-289 223-359 (444)
262 PRK06444 prephenate dehydrogen 96.0 0.014 3E-07 54.1 6.1 61 166-275 1-62 (197)
263 PF02254 TrkA_N: TrkA-N domain 96.0 0.052 1.1E-06 45.0 9.1 90 168-270 1-94 (116)
264 PF00056 Ldh_1_N: lactate/mala 96.0 0.016 3.5E-07 50.7 6.1 110 166-281 1-125 (141)
265 TIGR02964 xanthine_xdhC xanthi 96.0 0.04 8.7E-07 52.8 9.3 87 166-290 101-187 (246)
266 TIGR03026 NDP-sugDHase nucleot 96.0 0.047 1E-06 56.1 10.4 90 162-271 310-409 (411)
267 PF02558 ApbA: Ketopantoate re 96.0 0.017 3.6E-07 50.4 6.0 122 168-296 1-124 (151)
268 PF03435 Saccharop_dh: Sacchar 96.0 0.011 2.4E-07 59.9 5.6 94 168-271 1-97 (386)
269 PF13380 CoA_binding_2: CoA bi 95.9 0.033 7E-07 47.1 7.3 100 166-292 1-104 (116)
270 cd01339 LDH-like_MDH L-lactate 95.8 0.043 9.2E-07 53.9 9.0 73 168-244 1-74 (300)
271 TIGR01809 Shik-DH-AROM shikima 95.8 0.03 6.5E-07 54.7 7.8 79 162-247 122-201 (282)
272 PRK14030 glutamate dehydrogena 95.8 0.059 1.3E-06 55.8 10.2 122 160-291 223-361 (445)
273 PRK02102 ornithine carbamoyltr 95.8 0.53 1.1E-05 47.2 16.5 106 162-271 152-272 (331)
274 cd00757 ThiF_MoeB_HesA_family 95.7 0.042 9.1E-07 51.8 8.1 107 161-272 17-143 (228)
275 cd05312 NAD_bind_1_malic_enz N 95.7 0.33 7.2E-06 47.3 14.1 192 122-347 3-224 (279)
276 PTZ00079 NADP-specific glutama 95.7 0.095 2.1E-06 54.4 10.9 124 160-291 232-370 (454)
277 PRK00779 ornithine carbamoyltr 95.6 2.1 4.5E-05 42.4 19.8 103 162-271 149-264 (304)
278 PRK05562 precorrin-2 dehydroge 95.6 0.052 1.1E-06 51.3 8.1 96 159-271 19-115 (223)
279 cd05292 LDH_2 A subgroup of L- 95.6 0.047 1E-06 53.9 8.1 74 166-247 1-78 (308)
280 KOG2653 6-phosphogluconate deh 95.5 0.076 1.7E-06 53.0 9.2 164 166-349 7-173 (487)
281 PRK10637 cysG siroheme synthas 95.5 0.048 1E-06 56.9 8.3 77 161-248 8-84 (457)
282 PRK03515 ornithine carbamoyltr 95.5 1.4 3E-05 44.2 18.3 78 162-243 153-232 (336)
283 PRK00683 murD UDP-N-acetylmura 95.5 0.031 6.7E-07 57.4 6.8 109 165-288 3-126 (418)
284 PRK06019 phosphoribosylaminoim 95.5 0.019 4.1E-07 58.1 5.2 36 165-201 2-37 (372)
285 PRK04284 ornithine carbamoyltr 95.5 2.2 4.9E-05 42.7 19.8 106 162-271 152-273 (332)
286 PLN02353 probable UDP-glucose 95.5 0.11 2.3E-06 54.6 10.6 114 162-282 321-455 (473)
287 PRK08306 dipicolinate synthase 95.4 0.11 2.4E-06 51.0 10.2 107 164-293 1-117 (296)
288 PRK00856 pyrB aspartate carbam 95.4 2.8 6.1E-05 41.5 19.9 65 162-243 153-220 (305)
289 TIGR01850 argC N-acetyl-gamma- 95.4 0.083 1.8E-06 53.1 9.2 96 166-274 1-101 (346)
290 TIGR01381 E1_like_apg7 E1-like 95.4 0.11 2.3E-06 56.1 10.3 134 118-272 306-480 (664)
291 PF13478 XdhC_C: XdhC Rossmann 95.3 0.046 1E-06 47.6 6.4 86 168-296 1-86 (136)
292 TIGR03316 ygeW probable carbam 95.3 0.71 1.5E-05 46.7 15.8 78 162-243 167-252 (357)
293 PRK02472 murD UDP-N-acetylmura 95.3 0.19 4.1E-06 51.9 12.0 118 162-288 2-132 (447)
294 PRK05708 2-dehydropantoate 2-r 95.3 0.11 2.5E-06 51.1 9.9 126 166-297 3-128 (305)
295 COG0771 MurD UDP-N-acetylmuram 95.2 0.13 2.8E-06 53.4 10.3 132 163-304 5-158 (448)
296 PRK07232 bifunctional malic en 95.2 0.46 9.9E-06 52.5 15.0 165 108-323 152-326 (752)
297 PRK12862 malic enzyme; Reviewe 95.2 0.54 1.2E-05 52.1 15.6 164 109-323 161-334 (763)
298 PRK08644 thiamine biosynthesis 95.2 0.11 2.3E-06 48.7 8.8 37 161-198 24-61 (212)
299 PLN02968 Probable N-acetyl-gam 95.2 0.085 1.8E-06 53.8 8.8 108 163-284 36-146 (381)
300 PRK03369 murD UDP-N-acetylmura 95.2 0.071 1.5E-06 56.1 8.3 113 163-288 10-141 (488)
301 cd00762 NAD_bind_malic_enz NAD 95.1 0.45 9.8E-06 45.8 12.8 190 123-345 4-223 (254)
302 PRK07688 thiamine/molybdopteri 95.1 0.074 1.6E-06 53.4 7.8 99 161-261 20-140 (339)
303 cd01483 E1_enzyme_family Super 95.1 0.13 2.9E-06 44.5 8.4 32 167-199 1-33 (143)
304 PRK09496 trkA potassium transp 95.0 0.18 3.8E-06 52.0 10.8 99 162-271 228-330 (453)
305 COG0281 SfcA Malic enzyme [Ene 95.0 1.2 2.5E-05 45.8 16.1 194 107-345 165-370 (432)
306 COG1004 Ugd Predicted UDP-gluc 95.0 0.12 2.5E-06 52.6 8.8 89 163-270 308-406 (414)
307 PRK12749 quinate/shikimate deh 95.0 0.22 4.9E-06 48.8 10.8 80 162-246 121-206 (288)
308 PLN02342 ornithine carbamoyltr 95.0 4.3 9.4E-05 40.9 20.1 103 162-271 191-306 (348)
309 PRK08300 acetaldehyde dehydrog 95.0 0.2 4.3E-06 49.5 10.3 91 165-272 4-101 (302)
310 PLN02602 lactate dehydrogenase 95.0 0.38 8.3E-06 48.5 12.6 110 166-281 38-161 (350)
311 PRK08762 molybdopterin biosynt 95.0 0.25 5.5E-06 50.1 11.4 37 161-198 131-168 (376)
312 PRK09496 trkA potassium transp 95.0 0.15 3.2E-06 52.6 9.9 74 166-248 1-77 (453)
313 PRK03659 glutathione-regulated 94.9 0.2 4.3E-06 54.2 10.9 96 165-273 400-499 (601)
314 PRK10669 putative cation:proto 94.9 0.1 2.2E-06 55.8 8.6 92 166-270 418-513 (558)
315 PRK06270 homoserine dehydrogen 94.8 0.2 4.3E-06 50.3 10.2 118 167-291 4-145 (341)
316 PRK05690 molybdopterin biosynt 94.8 0.1 2.3E-06 49.8 7.8 106 161-271 28-153 (245)
317 PF02629 CoA_binding: CoA bind 94.8 0.1 2.2E-06 42.4 6.6 75 166-256 4-81 (96)
318 TIGR01761 thiaz-red thiazoliny 94.8 0.37 8.1E-06 48.4 11.9 113 166-294 4-119 (343)
319 PRK01390 murD UDP-N-acetylmura 94.7 0.31 6.7E-06 50.6 11.5 112 162-288 6-138 (460)
320 cd01486 Apg7 Apg7 is an E1-lik 94.7 0.16 3.4E-06 50.1 8.6 102 167-273 1-141 (307)
321 PRK08328 hypothetical protein; 94.7 0.11 2.5E-06 49.1 7.6 106 161-273 23-151 (231)
322 cd01492 Aos1_SUMO Ubiquitin ac 94.6 0.18 3.8E-06 46.7 8.5 38 161-199 17-55 (197)
323 PRK15076 alpha-galactosidase; 94.6 0.2 4.3E-06 52.0 9.7 125 166-295 2-169 (431)
324 COG0334 GdhA Glutamate dehydro 94.6 0.13 2.9E-06 52.4 8.1 105 161-278 203-318 (411)
325 cd01487 E1_ThiF_like E1_ThiF_l 94.6 0.13 2.8E-06 46.5 7.4 92 167-261 1-112 (174)
326 PRK12861 malic enzyme; Reviewe 94.6 0.75 1.6E-05 50.9 14.4 163 109-323 157-330 (764)
327 PRK02255 putrescine carbamoylt 94.6 0.28 6E-06 49.3 10.3 74 162-242 151-228 (338)
328 PRK11064 wecC UDP-N-acetyl-D-m 94.5 0.2 4.3E-06 51.7 9.4 71 160-246 315-396 (415)
329 PRK03562 glutathione-regulated 94.5 0.17 3.7E-06 54.9 9.3 96 165-273 400-499 (621)
330 PRK06153 hypothetical protein; 94.5 0.2 4.2E-06 51.1 9.0 107 162-275 173-301 (393)
331 PRK00141 murD UDP-N-acetylmura 94.5 0.12 2.7E-06 54.0 8.0 117 161-289 11-146 (473)
332 PRK09880 L-idonate 5-dehydroge 94.5 0.25 5.5E-06 48.9 9.9 96 163-273 168-267 (343)
333 PRK00421 murC UDP-N-acetylmura 94.4 0.13 2.8E-06 53.5 8.1 116 162-290 4-133 (461)
334 TIGR01532 E4PD_g-proteo D-eryt 94.4 0.15 3.3E-06 50.8 8.0 101 167-273 1-121 (325)
335 PRK05086 malate dehydrogenase; 94.4 0.21 4.5E-06 49.6 8.9 102 166-274 1-120 (312)
336 PRK02006 murD UDP-N-acetylmura 94.3 0.14 3E-06 53.9 7.9 119 162-290 4-147 (498)
337 cd05188 MDR Medium chain reduc 94.3 0.55 1.2E-05 43.7 11.2 98 163-275 133-235 (271)
338 cd00300 LDH_like L-lactate deh 94.2 0.34 7.3E-06 47.7 10.0 99 168-273 1-116 (300)
339 TIGR02355 moeB molybdopterin s 94.1 0.19 4.1E-06 48.0 7.8 99 161-261 20-138 (240)
340 PRK05600 thiamine biosynthesis 94.1 0.23 4.9E-06 50.5 8.7 99 161-261 37-155 (370)
341 TIGR03215 ac_ald_DH_ac acetald 94.1 0.31 6.7E-06 47.8 9.3 91 166-272 2-95 (285)
342 COG0169 AroE Shikimate 5-dehyd 94.1 0.3 6.4E-06 47.8 9.1 103 161-274 122-228 (283)
343 PRK01438 murD UDP-N-acetylmura 94.0 0.75 1.6E-05 48.0 12.7 120 160-288 11-146 (480)
344 PRK07806 short chain dehydroge 94.0 0.29 6.3E-06 45.7 8.8 37 163-200 4-41 (248)
345 PRK12562 ornithine carbamoyltr 93.9 6.1 0.00013 39.7 18.3 106 162-271 153-274 (334)
346 PLN02948 phosphoribosylaminoim 93.9 0.11 2.3E-06 55.9 6.2 75 162-246 19-93 (577)
347 PRK04690 murD UDP-N-acetylmura 93.9 0.15 3.3E-06 53.3 7.3 116 163-288 6-139 (468)
348 PRK00436 argC N-acetyl-gamma-g 93.8 0.18 3.8E-06 50.7 7.3 97 166-277 3-104 (343)
349 TIGR00670 asp_carb_tr aspartat 93.8 0.41 8.9E-06 47.3 9.6 102 162-271 147-262 (301)
350 PRK13814 pyrB aspartate carbam 93.7 2.2 4.7E-05 42.4 14.6 65 163-242 155-223 (310)
351 PRK15182 Vi polysaccharide bio 93.7 0.43 9.3E-06 49.4 10.0 96 160-276 309-416 (425)
352 PLN02520 bifunctional 3-dehydr 93.7 0.21 4.5E-06 53.2 7.8 40 161-201 375-414 (529)
353 PF05368 NmrA: NmrA-like famil 93.6 0.12 2.7E-06 48.1 5.5 87 168-262 1-95 (233)
354 PRK05597 molybdopterin biosynt 93.5 0.29 6.2E-06 49.4 8.2 98 161-261 24-142 (355)
355 PRK14804 ornithine carbamoyltr 93.5 6.3 0.00014 39.1 17.4 72 162-242 150-224 (311)
356 COG0673 MviM Predicted dehydro 93.5 0.28 6.1E-06 48.3 8.0 70 166-248 4-79 (342)
357 TIGR01161 purK phosphoribosyla 93.5 0.097 2.1E-06 52.4 4.7 33 167-200 1-33 (352)
358 PRK12937 short chain dehydroge 93.5 0.48 1E-05 44.0 9.1 37 162-199 2-39 (245)
359 cd05290 LDH_3 A subgroup of L- 93.5 0.25 5.4E-06 48.9 7.5 100 167-273 1-120 (307)
360 PRK07984 enoyl-(acyl carrier p 93.4 0.36 7.8E-06 46.2 8.5 35 163-198 4-41 (262)
361 KOG2711 Glycerol-3-phosphate d 93.4 0.59 1.3E-05 46.6 9.8 177 163-346 19-235 (372)
362 PRK07231 fabG 3-ketoacyl-(acyl 93.3 0.27 5.8E-06 45.8 7.2 39 162-201 2-41 (251)
363 PLN02527 aspartate carbamoyltr 93.3 0.74 1.6E-05 45.6 10.5 102 162-271 148-265 (306)
364 PRK14027 quinate/shikimate deh 93.2 0.43 9.4E-06 46.7 8.7 80 162-246 124-204 (283)
365 PRK08223 hypothetical protein; 93.2 0.3 6.4E-06 47.9 7.4 37 161-198 23-60 (287)
366 cd01485 E1-1_like Ubiquitin ac 93.2 0.45 9.8E-06 43.9 8.4 38 161-199 15-53 (198)
367 PLN02214 cinnamoyl-CoA reducta 93.2 0.46 1E-05 47.3 9.1 83 162-245 7-90 (342)
368 cd01338 MDH_choloroplast_like 93.2 0.66 1.4E-05 46.2 10.1 116 166-288 3-142 (322)
369 PRK04148 hypothetical protein; 93.1 0.36 7.8E-06 42.0 7.1 72 164-246 16-87 (134)
370 PF13460 NAD_binding_10: NADH( 93.0 0.13 2.9E-06 45.7 4.5 70 168-249 1-73 (183)
371 cd05294 LDH-like_MDH_nadp A la 93.0 0.69 1.5E-05 45.8 9.8 123 166-294 1-145 (309)
372 PRK05786 fabG 3-ketoacyl-(acyl 93.0 0.35 7.5E-06 44.8 7.4 39 162-201 2-41 (238)
373 PRK06701 short chain dehydroge 92.9 0.37 8E-06 46.8 7.7 39 161-200 42-81 (290)
374 PF03949 Malic_M: Malic enzyme 92.9 0.53 1.1E-05 45.4 8.5 122 122-276 3-145 (255)
375 PLN02272 glyceraldehyde-3-phos 92.9 0.17 3.7E-06 52.0 5.5 37 166-202 86-123 (421)
376 PRK11891 aspartate carbamoyltr 92.7 0.58 1.3E-05 48.4 9.1 75 162-244 238-316 (429)
377 PRK04308 murD UDP-N-acetylmura 92.7 1.9 4E-05 44.6 13.0 116 163-288 3-134 (445)
378 TIGR01772 MDH_euk_gproteo mala 92.6 0.44 9.5E-06 47.3 7.9 103 167-279 1-121 (312)
379 COG0057 GapA Glyceraldehyde-3- 92.6 0.28 6.1E-06 48.7 6.3 32 166-197 2-34 (335)
380 PF04016 DUF364: Domain of unk 92.5 0.37 8.1E-06 42.5 6.5 88 162-273 8-96 (147)
381 PF00044 Gp_dh_N: Glyceraldehy 92.5 0.18 4E-06 44.7 4.5 36 167-202 2-38 (151)
382 PRK06128 oxidoreductase; Provi 92.4 0.48 1E-05 46.1 7.9 36 162-198 52-88 (300)
383 PRK06349 homoserine dehydrogen 92.4 0.96 2.1E-05 46.8 10.4 108 166-291 4-124 (426)
384 cd08230 glucose_DH Glucose deh 92.3 0.77 1.7E-05 45.6 9.4 96 163-273 171-270 (355)
385 TIGR01851 argC_other N-acetyl- 92.3 0.64 1.4E-05 46.1 8.5 77 167-272 3-80 (310)
386 PLN02819 lysine-ketoglutarate 92.3 0.58 1.3E-05 53.5 9.2 107 163-272 201-338 (1042)
387 COG2344 AT-rich DNA-binding pr 92.3 0.16 3.5E-06 46.5 3.8 67 167-246 86-156 (211)
388 PRK07877 hypothetical protein; 92.2 0.79 1.7E-05 50.6 9.9 98 161-261 103-220 (722)
389 PLN03209 translocon at the inn 92.1 0.8 1.7E-05 49.1 9.4 38 163-201 78-116 (576)
390 TIGR02717 AcCoA-syn-alpha acet 92.0 1.2 2.5E-05 46.5 10.5 109 163-294 5-125 (447)
391 PRK03803 murD UDP-N-acetylmura 92.0 2.1 4.5E-05 44.3 12.3 114 165-288 6-132 (448)
392 PRK10206 putative oxidoreducta 91.9 0.46 9.9E-06 47.6 7.2 68 167-247 3-75 (344)
393 PF00899 ThiF: ThiF family; I 91.9 0.17 3.7E-06 43.5 3.6 34 165-199 2-36 (135)
394 PTZ00325 malate dehydrogenase; 91.9 0.39 8.6E-06 47.8 6.6 105 162-274 5-127 (321)
395 COG1893 ApbA Ketopantoate redu 91.9 0.81 1.8E-05 45.3 8.8 150 166-325 1-154 (307)
396 PRK08192 aspartate carbamoyltr 91.8 0.94 2E-05 45.5 9.2 74 162-242 156-232 (338)
397 PLN00106 malate dehydrogenase 91.8 0.35 7.6E-06 48.3 6.1 105 164-275 17-138 (323)
398 PRK06392 homoserine dehydrogen 91.8 0.77 1.7E-05 45.9 8.5 118 166-290 1-135 (326)
399 PRK03806 murD UDP-N-acetylmura 91.7 0.56 1.2E-05 48.4 7.8 115 162-288 3-129 (438)
400 cd08239 THR_DH_like L-threonin 91.7 1.1 2.4E-05 44.1 9.5 37 164-201 163-200 (339)
401 PRK12742 oxidoreductase; Provi 91.6 1 2.2E-05 41.6 8.7 36 162-198 3-39 (237)
402 PRK07411 hypothetical protein; 91.6 0.69 1.5E-05 47.3 8.2 102 161-264 34-155 (390)
403 TIGR01087 murD UDP-N-acetylmur 91.6 2.2 4.7E-05 43.9 11.9 115 167-290 1-128 (433)
404 COG3288 PntA NAD/NADP transhyd 91.5 0.5 1.1E-05 46.5 6.6 108 161-272 160-281 (356)
405 PRK07370 enoyl-(acyl carrier p 91.5 0.76 1.6E-05 43.6 7.9 35 162-197 3-40 (258)
406 PLN00112 malate dehydrogenase 91.5 2.2 4.8E-05 44.4 11.7 118 166-289 101-241 (444)
407 PRK01368 murD UDP-N-acetylmura 91.5 0.56 1.2E-05 48.9 7.5 111 164-288 5-128 (454)
408 cd01491 Ube1_repeat1 Ubiquitin 91.4 1.7 3.7E-05 42.6 10.3 38 161-199 15-53 (286)
409 PRK04523 N-acetylornithine car 91.4 2.2 4.8E-05 42.8 11.3 73 163-242 166-250 (335)
410 PLN02586 probable cinnamyl alc 91.3 1.1 2.4E-05 44.9 9.2 36 164-200 183-218 (360)
411 PF03447 NAD_binding_3: Homose 91.2 0.59 1.3E-05 38.9 6.0 99 172-289 1-110 (117)
412 cd01337 MDH_glyoxysomal_mitoch 91.2 1.1 2.5E-05 44.4 8.9 100 166-274 1-119 (310)
413 TIGR01202 bchC 2-desacetyl-2-h 91.1 0.9 2E-05 44.4 8.2 35 164-199 144-179 (308)
414 PF05222 AlaDh_PNT_N: Alanine 91.0 2.3 4.9E-05 36.9 9.7 98 180-301 19-119 (136)
415 PRK10537 voltage-gated potassi 91.0 1.1 2.4E-05 45.9 9.0 91 165-270 240-334 (393)
416 PRK05442 malate dehydrogenase; 91.0 1.8 3.8E-05 43.3 10.1 112 166-284 5-140 (326)
417 CHL00194 ycf39 Ycf39; Provisio 90.9 1 2.2E-05 44.1 8.4 70 166-245 1-73 (317)
418 TIGR01771 L-LDH-NAD L-lactate 90.8 1.3 2.7E-05 43.7 8.9 106 170-281 1-120 (299)
419 PRK08324 short chain dehydroge 90.7 0.83 1.8E-05 50.1 8.2 40 161-201 418-458 (681)
420 cd05298 GH4_GlvA_pagL_like Gly 90.6 2.2 4.7E-05 44.4 10.7 125 166-294 1-165 (437)
421 COG0039 Mdh Malate/lactate deh 90.6 0.42 9.2E-06 47.4 5.2 34 166-199 1-35 (313)
422 cd08281 liver_ADH_like1 Zinc-d 90.6 1.6 3.4E-05 43.8 9.5 37 164-201 191-228 (371)
423 PF02056 Glyco_hydro_4: Family 90.5 1.8 3.9E-05 39.7 8.9 117 167-287 1-159 (183)
424 PRK11863 N-acetyl-gamma-glutam 90.5 1.1 2.3E-05 44.6 8.0 77 166-272 3-81 (313)
425 COG4007 Predicted dehydrogenas 90.4 0.79 1.7E-05 44.1 6.6 96 177-286 33-128 (340)
426 PRK14874 aspartate-semialdehyd 90.3 0.94 2E-05 45.3 7.5 91 165-273 1-95 (334)
427 TIGR01832 kduD 2-deoxy-D-gluco 90.2 1.6 3.5E-05 40.6 8.7 38 162-200 2-40 (248)
428 cd05283 CAD1 Cinnamyl alcohol 90.1 1.6 3.5E-05 42.9 9.1 37 163-200 168-204 (337)
429 PRK09189 uroporphyrinogen-III 90.1 6.2 0.00013 37.1 12.7 57 16-72 1-58 (240)
430 PLN02178 cinnamyl-alcohol dehy 90.1 1.5 3.2E-05 44.4 8.9 36 164-200 178-213 (375)
431 cd08293 PTGR2 Prostaglandin re 90.1 2.1 4.6E-05 42.0 9.8 36 165-201 155-192 (345)
432 TIGR01758 MDH_euk_cyt malate d 90.0 1.8 4E-05 43.1 9.3 107 167-281 1-132 (324)
433 PRK12826 3-ketoacyl-(acyl-carr 90.0 0.84 1.8E-05 42.3 6.6 39 162-201 3-42 (251)
434 PLN02514 cinnamyl-alcohol dehy 90.0 1.8 3.9E-05 43.2 9.3 97 163-273 179-276 (357)
435 TIGR02853 spore_dpaA dipicolin 90.0 1.7 3.6E-05 42.7 8.8 104 165-291 1-114 (287)
436 cd00704 MDH Malate dehydrogena 90.0 1.8 4E-05 43.1 9.3 115 167-289 2-141 (323)
437 PRK06172 short chain dehydroge 89.9 0.72 1.6E-05 43.2 6.1 39 162-201 4-43 (253)
438 PRK07523 gluconate 5-dehydroge 89.9 1.4 3.1E-05 41.3 8.1 39 162-201 7-46 (255)
439 smart00846 Gp_dh_N Glyceraldeh 89.8 0.51 1.1E-05 41.7 4.6 32 166-197 1-33 (149)
440 TIGR03201 dearomat_had 6-hydro 89.7 2.3 5.1E-05 42.1 9.9 37 164-201 166-202 (349)
441 PRK12747 short chain dehydroge 89.7 2.1 4.5E-05 40.0 9.1 34 163-197 2-36 (252)
442 PRK06114 short chain dehydroge 89.7 0.74 1.6E-05 43.3 6.0 38 162-200 5-43 (254)
443 COG5495 Uncharacterized conser 89.6 0.96 2.1E-05 42.9 6.4 97 159-273 4-100 (289)
444 TIGR03366 HpnZ_proposed putati 89.6 1.7 3.6E-05 41.8 8.5 36 164-200 120-156 (280)
445 PRK06182 short chain dehydroge 89.6 1.4 2.9E-05 42.0 7.8 37 164-201 2-39 (273)
446 TIGR01759 MalateDH-SF1 malate 89.5 1.1 2.4E-05 44.6 7.3 107 167-281 5-136 (323)
447 TIGR03451 mycoS_dep_FDH mycoth 89.5 2.4 5.2E-05 42.2 9.8 37 164-201 176-213 (358)
448 PRK13529 malate dehydrogenase; 89.5 6.6 0.00014 42.0 13.2 209 106-347 260-501 (563)
449 TIGR02825 B4_12hDH leukotriene 89.3 2.6 5.6E-05 41.1 9.8 94 164-273 138-238 (325)
450 PF00070 Pyr_redox: Pyridine n 89.3 0.7 1.5E-05 35.8 4.6 33 167-200 1-33 (80)
451 TIGR03649 ergot_EASG ergot alk 89.3 1.1 2.4E-05 42.9 7.0 70 167-247 1-78 (285)
452 PRK15425 gapA glyceraldehyde-3 89.3 2.1 4.5E-05 42.9 8.9 32 166-197 3-34 (331)
453 KOG2741 Dimeric dihydrodiol de 89.2 4 8.6E-05 40.9 10.7 110 167-291 8-124 (351)
454 COG0078 ArgF Ornithine carbamo 89.2 16 0.00035 36.0 14.8 105 163-271 151-269 (310)
455 cd08296 CAD_like Cinnamyl alco 89.2 3 6.4E-05 40.9 10.1 36 164-200 163-198 (333)
456 PRK04663 murD UDP-N-acetylmura 89.2 5.7 0.00012 41.0 12.6 114 163-288 4-132 (438)
457 PRK15057 UDP-glucose 6-dehydro 89.1 1.2 2.5E-05 45.7 7.2 65 163-245 294-368 (388)
458 PRK07326 short chain dehydroge 89.0 1.1 2.4E-05 41.4 6.5 38 163-201 4-42 (237)
459 cd08234 threonine_DH_like L-th 89.0 2.2 4.7E-05 41.6 8.9 98 163-275 158-260 (334)
460 PRK02705 murD UDP-N-acetylmura 89.0 5.6 0.00012 41.1 12.4 117 167-288 2-133 (459)
461 PRK14573 bifunctional D-alanyl 89.0 3.1 6.7E-05 46.6 11.1 112 166-290 5-130 (809)
462 PRK08217 fabG 3-ketoacyl-(acyl 88.9 1.6 3.5E-05 40.4 7.6 39 162-201 2-41 (253)
463 PRK08265 short chain dehydroge 88.8 3 6.6E-05 39.4 9.6 38 162-200 3-41 (261)
464 PRK14851 hypothetical protein; 88.8 0.89 1.9E-05 49.9 6.5 37 161-198 39-76 (679)
465 cd08237 ribitol-5-phosphate_DH 88.6 3.3 7.1E-05 41.1 10.0 38 164-201 163-201 (341)
466 PRK07904 short chain dehydroge 88.5 1.9 4E-05 40.9 7.9 37 164-201 7-45 (253)
467 PRK07825 short chain dehydroge 88.5 2.4 5.2E-05 40.2 8.7 39 162-201 2-41 (273)
468 PRK05717 oxidoreductase; Valid 88.5 3 6.4E-05 39.1 9.2 39 161-200 6-45 (255)
469 cd08260 Zn_ADH6 Alcohol dehydr 88.5 3.1 6.7E-05 40.9 9.7 95 164-273 165-265 (345)
470 PRK12828 short chain dehydroge 88.5 4.8 0.0001 36.8 10.4 39 162-201 4-43 (239)
471 COG0540 PyrB Aspartate carbamo 88.4 4.3 9.3E-05 40.1 10.2 71 163-241 156-229 (316)
472 cd05296 GH4_P_beta_glucosidase 88.4 5.2 0.00011 41.4 11.5 126 166-294 1-165 (419)
473 PRK08594 enoyl-(acyl carrier p 88.3 2.9 6.3E-05 39.6 9.0 36 162-198 4-42 (257)
474 PLN03075 nicotianamine synthas 88.3 1.9 4.1E-05 42.5 7.8 102 164-271 123-232 (296)
475 PLN02427 UDP-apiose/xylose syn 88.3 0.88 1.9E-05 45.9 5.7 41 159-200 8-50 (386)
476 PRK06197 short chain dehydroge 88.1 2.9 6.3E-05 40.6 9.1 40 161-201 12-52 (306)
477 TIGR01757 Malate-DH_plant mala 88.1 6.3 0.00014 40.4 11.7 117 166-288 45-184 (387)
478 TIGR02822 adh_fam_2 zinc-bindi 88.0 2.5 5.4E-05 41.8 8.6 91 164-273 165-255 (329)
479 PRK06841 short chain dehydroge 88.0 3.2 6.9E-05 38.8 9.0 38 162-200 12-50 (255)
480 cd05197 GH4_glycoside_hydrolas 88.0 4.5 9.7E-05 42.0 10.7 126 166-294 1-165 (425)
481 PRK08628 short chain dehydroge 88.0 1.3 2.9E-05 41.5 6.4 40 161-201 3-43 (258)
482 PRK12935 acetoacetyl-CoA reduc 88.0 1.4 3.1E-05 40.9 6.6 36 162-198 3-39 (247)
483 PRK13535 erythrose 4-phosphate 88.0 2 4.3E-05 43.1 7.9 31 167-197 3-36 (336)
484 PRK08955 glyceraldehyde-3-phos 87.9 2.8 6.1E-05 42.0 8.9 34 166-199 3-37 (334)
485 PRK06196 oxidoreductase; Provi 87.9 2.7 6E-05 41.0 8.8 39 162-201 23-62 (315)
486 PRK08862 short chain dehydroge 87.9 2.3 4.9E-05 39.8 7.9 39 162-201 2-41 (227)
487 cd01336 MDH_cytoplasmic_cytoso 87.8 1 2.3E-05 44.9 5.8 107 167-281 4-135 (325)
488 PRK07062 short chain dehydroge 87.8 3.3 7.2E-05 39.0 9.1 39 161-200 4-43 (265)
489 PLN03154 putative allyl alcoho 87.8 3.9 8.4E-05 40.8 9.9 38 163-201 157-195 (348)
490 cd01484 E1-2_like Ubiquitin ac 87.7 3.9 8.6E-05 38.9 9.4 103 167-274 1-125 (234)
491 PRK09242 tropinone reductase; 87.6 3.5 7.6E-05 38.6 9.1 39 162-201 6-45 (257)
492 PLN02383 aspartate semialdehyd 87.6 1.7 3.7E-05 43.8 7.2 91 164-272 6-100 (344)
493 PRK07239 bifunctional uroporph 87.6 10 0.00022 38.4 13.0 151 10-198 6-179 (381)
494 cd08245 CAD Cinnamyl alcohol d 87.5 4.2 9.1E-05 39.5 9.9 96 163-273 161-257 (330)
495 PRK12481 2-deoxy-D-gluconate 3 87.5 3.1 6.7E-05 39.1 8.7 38 162-200 5-43 (251)
496 KOG4230 C1-tetrahydrofolate sy 87.5 1.6 3.5E-05 46.4 7.0 171 161-382 158-337 (935)
497 PLN02206 UDP-glucuronate decar 87.4 1.6 3.5E-05 45.4 7.1 41 158-199 112-153 (442)
498 PLN02740 Alcohol dehydrogenase 87.4 3.9 8.4E-05 41.2 9.8 37 163-200 197-234 (381)
499 PRK08664 aspartate-semialdehyd 87.4 3.1 6.7E-05 41.8 8.9 97 166-272 4-107 (349)
500 PLN03096 glyceraldehyde-3-phos 87.3 2.8 6E-05 43.0 8.6 32 166-197 61-94 (395)
No 1
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.2e-78 Score=610.71 Aligned_cols=381 Identities=93% Similarity=1.424 Sum_probs=329.6
Q ss_pred CCCcceeEeeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 015895 1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA 80 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~ 80 (398)
|.+++++.+.+|+.++||+++.+++++...+.|++.+++++.....+..++++++.+.+.+++|+++++..+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~ 80 (386)
T PLN02306 1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS 80 (386)
T ss_pred CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence 89999999999999999999999886435788877666776443223346889998887545999999888899999999
Q ss_pred HhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc
Q 015895 81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (398)
Q Consensus 81 ~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g 160 (398)
+++++++|+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|..|.+....|
T Consensus 81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g 160 (386)
T PLN02306 81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG 160 (386)
T ss_pred hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence 99987679999999999999999999999999999999999999999999999999999999999999998887654568
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+|+||||||||+|+||+.+|++++++|||+|++|||+.....+.+...++..+...+.....+....+++|++++||+|
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV 240 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence 89999999999999999999999634999999999998754322111111111111111111122235899999999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPH 320 (398)
++|+|+|++|++|||++.|++||+|++|||+|||++|||+||++||++|+++||+||||++||++++|||++|||++|||
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH 320 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH 320 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988788999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhh
Q 015895 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGK 381 (398)
Q Consensus 321 ia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (398)
+|+.|.++++++...+++|+.+|++|+++.|.||.++|++.++..++..+|+|.+++.||.
T Consensus 321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (386)
T PLN02306 321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGL 381 (386)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCC
Confidence 9999999999999999999999999999999997344787777788899999999999985
No 2
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-78 Score=575.31 Aligned_cols=345 Identities=32% Similarity=0.467 Sum_probs=315.5
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeecc
Q 015895 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (398)
Q Consensus 17 kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G 96 (398)
+||+++++.+. .++.|++.+.++++... ++.||+...+.+ +|++|+|+.|++++++|+.... ++|+|+++|+|
T Consensus 8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~~----~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G 80 (406)
T KOG0068|consen 8 KILVAESLDQA-CIEILKDNGYQVEFKKN----LSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG 80 (406)
T ss_pred eEEEecccchH-HHHHHHhcCceEEEecc----CCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence 59999999885 79999999988876542 678899999985 9999999999999999995433 45999999999
Q ss_pred ccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 015895 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (398)
Q Consensus 97 ~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I 176 (398)
+||||+++|+++||.|.|+|.+|+.++||++++++++++|+++++..++|+|+ |.+..+.|.||+|||+||+|+|+|
T Consensus 81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~---wnr~~~~G~el~GKTLgvlG~GrI 157 (406)
T KOG0068|consen 81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGK---WNRVKYLGWELRGKTLGVLGLGRI 157 (406)
T ss_pred ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCc---eeecceeeeEEeccEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
|+++|+++ +++||+|++|||..+..... ..| ++ ..+++|++..||||++|+|+||+|++|+|+
T Consensus 158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----vq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~ 220 (406)
T KOG0068|consen 158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----VQ-LVSLEEILPKADFITLHVPLTPSTEKLLND 220 (406)
T ss_pred hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----ce-eeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence 99999996 89999999999998764221 112 22 358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC---CCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA 333 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~---~~~L~~~~nvilTPHia~~T~ea~~~~~ 333 (398)
+.|++||+|+++||+|||++||++||++||++|+++|||+|||+.||+. ++.|.+||||++|||+|++|.|+|.+++
T Consensus 221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia 300 (406)
T KOG0068|consen 221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA 300 (406)
T ss_pred HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 4689999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCccee
Q 015895 334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCL 392 (398)
Q Consensus 334 ~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (398)
..+++++.+|.+| ...++|| . |-+. .+..++.+||+.++|++|++..|-++++--
T Consensus 301 ievaea~~~~~~~-~~~g~Vn-a-~~v~-~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~ 355 (406)
T KOG0068|consen 301 IEVAEAVSDYING-NSAGSVN-A-PEVA-LESLTELKPNIVLAEKLGRLVPGVLKGVNG 355 (406)
T ss_pred HHHHHHHHHHhcc-Cccceec-h-hhhh-hhhhhccCchhHHHHHHhhhhHHHhcCCcc
Confidence 9999999999999 7778995 4 7776 568999999999999999999998887643
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-74 Score=568.05 Aligned_cols=312 Identities=37% Similarity=0.513 Sum_probs=279.0
Q ss_pred CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895 13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92 (398)
Q Consensus 13 ~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~ 92 (398)
++++++++++++.+. +.+.+... .++++... ...+++++.+.+.+ +|++++ +.+++++++++.+++| |+|++
T Consensus 1 ~~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~--~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~ 72 (324)
T COG0111 1 KMMIKVLVTDPLAPD-ALEELLAA-YDVEVPDG--PDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGR 72 (324)
T ss_pred CCcceeeccCccCHH-HHHHHHhc-cccccccc--cccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence 367889999999986 55666554 33333322 23567778888875 999999 8899999999999988 99999
Q ss_pred eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895 93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172 (398)
Q Consensus 93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG 172 (398)
.|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++++++|. |.+..+.|.+|+||||||||
T Consensus 73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~---W~~~~~~g~el~gkTvGIiG 149 (324)
T COG0111 73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGE---WDRKAFRGTELAGKTVGIIG 149 (324)
T ss_pred ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCC---ccccccccccccCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998 54466778899999999999
Q ss_pred cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (398)
Q Consensus 173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~ 252 (398)
+|+||+.+|+++ ++|||+|++|||+.+...+. ..+.....+|++++++||||++|+|+|++|+|
T Consensus 150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g 213 (324)
T COG0111 150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG 213 (324)
T ss_pred CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence 999999999997 89999999999976553221 11233457899999999999999999999999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHHHHHH
Q 015895 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG 331 (398)
Q Consensus 253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ea~~~ 331 (398)
|||++.|++||+|++|||||||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|++|.|++++
T Consensus 214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~ 293 (324)
T COG0111 214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER 293 (324)
T ss_pred ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q 015895 332 MATLAALNVLGKIKGYPIWG 351 (398)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~~ 351 (398)
++.++++|+.+|++|+++.|
T Consensus 294 ~~~~~~~~i~~~l~g~~~~~ 313 (324)
T COG0111 294 VAEIVAENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999776
No 4
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=4.2e-73 Score=593.28 Aligned_cols=344 Identities=34% Similarity=0.493 Sum_probs=308.7
Q ss_pred EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeecc
Q 015895 17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG 96 (398)
Q Consensus 17 kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G 96 (398)
|||+++++++. ..+.|++.++++... + ..+++++.+.+.+ +|++++++.+++++++++++|+| |+|+++|+|
T Consensus 1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G 72 (525)
T TIGR01327 1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG 72 (525)
T ss_pred CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence 47889988764 678887766666542 2 2478888888875 99999998889999999999988 999999999
Q ss_pred ccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 015895 97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI 176 (398)
Q Consensus 97 ~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I 176 (398)
+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+| .+..+.|.+|+||||||||+|+|
T Consensus 73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W---~~~~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEW---DRKAFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCc---cccccCccccCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999999999999999985 44445788999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
|+.+|+++ ++|||+|++|||+....... . .++....+++|++++||+|++|+|+|++|+++||+
T Consensus 150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence 99999997 79999999999975432111 0 12222358999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHHH
Q 015895 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA 336 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~ 336 (398)
+.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|++|.+++++++..+
T Consensus 214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~ 293 (525)
T TIGR01327 214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV 293 (525)
T ss_pred HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcc
Q 015895 337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTV 390 (398)
Q Consensus 337 ~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (398)
++|+.+|++|+++.|.|| . |.++ .+.++.++||+.||++||+++.|=.|+-
T Consensus 294 ~~ni~~~~~g~~~~~~vn-~-~~~~-~~~~~~~~~~~~la~riG~~a~ql~~~~ 344 (525)
T TIGR01327 294 AEQVLDALKGLPVPNAVN-A-PGID-ADVMEKLKPYLDLAEKLGKLAGQLLDGA 344 (525)
T ss_pred HHHHHHHHcCCCCCceee-C-CCCC-chhhhhhhhHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999995 4 8887 5588899999999999999999987763
No 5
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=7e-72 Score=551.27 Aligned_cols=317 Identities=33% Similarity=0.495 Sum_probs=277.9
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
+++|||++++++++ ..+.|++. +++.... .....+.+++.+.+.+ +|+++++. .++++++++++|+| |+|++.
T Consensus 1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~~-ad~li~~~-~~~~~~~l~~~p~L--k~I~~~ 73 (323)
T PRK15409 1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFAE-AEGLLGSG-EKVDAALLEKMPKL--RAASTI 73 (323)
T ss_pred CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhcC-CeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence 46789999998764 67778764 4554332 1123467788888875 99999864 48999999999998 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (398)
|+|+||||+++|+++||.|+|+|++++++||||++++||+++|+++++++.+++|+|..|......|.+|+|||+||||+
T Consensus 74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~ 153 (323)
T PRK15409 74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM 153 (323)
T ss_pred ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999754332234578999999999999
Q ss_pred ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895 174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (398)
Q Consensus 174 G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~ 252 (398)
|+||+.+|+++ + +|||+|++|||+....... . .+. ...+++|++++||+|++|+|+|++|++
T Consensus 154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~----------~-----~~~-~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE----------R-----FNA-RYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH----------h-----cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 99999999997 7 9999999999985432110 0 111 235899999999999999999999999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG 331 (398)
Q Consensus 253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~ 331 (398)
+||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++ ++|||++|||++|||+|+.|.+++.+
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999985 57999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCC
Q 015895 332 MATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
+...+++|+.+|++|+++.+.||
T Consensus 297 ~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 297 MAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred HHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999885
No 6
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-72 Score=585.85 Aligned_cols=344 Identities=33% Similarity=0.486 Sum_probs=307.8
Q ss_pred eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895 16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94 (398)
Q Consensus 16 ~kvlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g 94 (398)
|||++++++++. ..+.|++. ++++... + ..+++++.+.+.+ +|++++++.+++++++++++|+| |+|++.|
T Consensus 1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~ 72 (526)
T PRK13581 1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG 72 (526)
T ss_pred CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence 478999988764 67788765 4454432 2 2467888888875 99999998889999999999988 9999999
Q ss_pred ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895 95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG 174 (398)
Q Consensus 95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG 174 (398)
+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|.|. +..+.|.+|+||||||||+|
T Consensus 73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~---~~~~~g~~l~gktvgIiG~G 149 (526)
T PRK13581 73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWE---RKKFMGVELYGKTLGIIGLG 149 (526)
T ss_pred cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCC---ccCccccccCCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999854 33456889999999999999
Q ss_pred hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhc
Q 015895 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254 (398)
Q Consensus 175 ~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li 254 (398)
+||+.+|+++ ++|||+|++|||+....... . .++.. .+++|++++||+|++|+|+|++|+++|
T Consensus 150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------Q-----LGVEL-VSLDELLARADFITLHTPLTPETRGLI 212 (526)
T ss_pred HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence 9999999997 79999999999975432110 0 11223 389999999999999999999999999
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHH
Q 015895 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334 (398)
Q Consensus 255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~ 334 (398)
+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|++|.+++++++.
T Consensus 213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~ 292 (526)
T PRK13581 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI 292 (526)
T ss_pred CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcc
Q 015895 335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTV 390 (398)
Q Consensus 335 ~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (398)
.+++|+.+|++|+++.|.|| + |.++ .+.++.++||+.+|++||+++.|=.|+-
T Consensus 293 ~~~~ni~~~~~g~~~~~~vn-~-~~~~-~~~~~~~~~~~~la~riG~~a~ql~~~~ 345 (526)
T PRK13581 293 QVAEQVIDALRGGPVPNAVN-L-PSIT-AEEAEKLKPYLDLAEKLGSLAAQLADGP 345 (526)
T ss_pred HHHHHHHHHHcCCCcCceee-C-CCCc-hhhhHHhHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999995 5 8887 5689999999999999999999987764
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=4.8e-71 Score=543.61 Aligned_cols=317 Identities=39% Similarity=0.536 Sum_probs=278.4
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
+|++++++.++++. ..+.+.+. +++......... .. ++.+... ++|++++...+++++++++++|+| |+|+..
T Consensus 1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~ 73 (324)
T COG1052 1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR 73 (324)
T ss_pred CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence 35668888888875 56777665 666655433111 22 5556555 499999998889999999999987 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCC-CCCcccccccCCCeEEEEe
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIG 172 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w-~~~~~~g~~l~gktvGIIG 172 (398)
|+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|+|..| ......|.+++|||+||||
T Consensus 74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG 153 (324)
T COG1052 74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG 153 (324)
T ss_pred ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999998765 2344678899999999999
Q ss_pred cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252 (398)
Q Consensus 173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~ 252 (398)
+|+||+++|+++ ++|||+|++|||++.+..+.. .++. +.+++|++++||+|++|||+|++|+|
T Consensus 154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~~-y~~l~ell~~sDii~l~~Plt~~T~h 216 (324)
T COG1052 154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGAR-YVDLDELLAESDIISLHCPLTPETRH 216 (324)
T ss_pred CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCce-eccHHHHHHhCCEEEEeCCCChHHhh
Confidence 999999999997 799999999999986432220 1122 34599999999999999999999999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCc---eEEcCCCCCCcHHH
Q 015895 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT 328 (398)
Q Consensus 253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~n---vilTPHia~~T~ea 328 (398)
|||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||.+ ++||++++| |++|||+|+.|.|+
T Consensus 217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea 296 (324)
T COG1052 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA 296 (324)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999985 678888777 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895 329 REGMATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 329 ~~~~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
+.+|+..+++|+.+|++|+...+.||
T Consensus 297 ~~~m~~~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 297 RKAMAELALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999988884
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-70 Score=557.91 Aligned_cols=322 Identities=28% Similarity=0.377 Sum_probs=286.1
Q ss_pred eeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCC
Q 015895 9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG 87 (398)
Q Consensus 9 ~~~~~~~~kvlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~ 87 (398)
+..|.++|||++++++++. ..+.|++.++ ++.... ...+++++.+.+.+ +|++++++.+++++++++++|+|
T Consensus 4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L-- 76 (409)
T PRK11790 4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL-- 76 (409)
T ss_pred CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence 4567888999999988764 6788877666 665432 13577888887774 99998888889999999999988
Q ss_pred ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895 88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (398)
Q Consensus 88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt 167 (398)
|+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|. +..+.|.+|.|||
T Consensus 77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~---~~~~~~~~L~gkt 153 (409)
T PRK11790 77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWN---KSAAGSFEVRGKT 153 (409)
T ss_pred eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccc---ccccCcccCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999854 3334678999999
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 247 (398)
|||||+|+||+.+|+++ ++|||+|++|||+..... + +.....+++|++++||+|++|+|+|
T Consensus 154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCC
Confidence 99999999999999997 899999999998643210 0 1223458999999999999999999
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-----CCCCCCCceEEcCCCC
Q 015895 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA 322 (398)
Q Consensus 248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-----~~L~~~~nvilTPHia 322 (398)
++|+++||++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||++. +|||++|||++|||+|
T Consensus 215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia 294 (409)
T PRK11790 215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG 294 (409)
T ss_pred hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence 99999999999999999999999999999999999999999999999999999999863 4899999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015895 323 SASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN 361 (398)
Q Consensus 323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~ 361 (398)
++|.+++++++..+++|+.+|++|+++.+.||. |.+.
T Consensus 295 ~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~--~~~~ 331 (409)
T PRK11790 295 GSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNF--PEVS 331 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcCcceec--cccc
Confidence 999999999999999999999999999999964 6554
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.5e-69 Score=535.75 Aligned_cols=318 Identities=43% Similarity=0.645 Sum_probs=280.1
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
|++||++++++++. ..+.|++. +++.... .+...+.+++.+.+.+ +|+++++..+++++++++++|+| |+|++.
T Consensus 1 ~~~kil~~~~~~~~-~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~ 74 (333)
T PRK13243 1 MKPKVFITREIPEN-GIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANY 74 (333)
T ss_pred CCceEEEECCCCHH-HHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence 46889999988754 66777764 4554432 2223467888887774 99999987778999999999988 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG 169 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~----w~~~~~~g~~l~gktvG 169 (398)
|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.. |....+.|.+|+|||||
T Consensus 75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg 154 (333)
T PRK13243 75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG 154 (333)
T ss_pred CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999753 22223467899999999
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (398)
Q Consensus 170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~ 249 (398)
|||+|+||+.+|+++ ++|||+|++|||+....... . .+. ...++++++++||+|++|+|+|++
T Consensus 155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~-----~~~-~~~~l~ell~~aDiV~l~lP~t~~ 217 (333)
T PRK13243 155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------E-----LGA-EYRPLEELLRESDFVSLHVPLTKE 217 (333)
T ss_pred EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------H-----cCC-EecCHHHHHhhCCEEEEeCCCChH
Confidence 999999999999997 79999999999986542110 0 111 135899999999999999999999
Q ss_pred hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHH
Q 015895 250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329 (398)
Q Consensus 250 T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~ 329 (398)
|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++
T Consensus 218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~ 297 (333)
T PRK13243 218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR 297 (333)
T ss_pred HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895 330 EGMATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 330 ~~~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
.++...+++|+.+|++|+++.|.||
T Consensus 298 ~~~~~~~~~ni~~~~~g~~~~~~v~ 322 (333)
T PRK13243 298 EGMAELVAENLIAFKRGEVPPTLVN 322 (333)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccC
Confidence 9999999999999999999999885
No 10
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=9.5e-69 Score=527.02 Aligned_cols=302 Identities=28% Similarity=0.422 Sum_probs=261.3
Q ss_pred eEEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 16 YRVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 16 ~kvlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
|||++.++ +++. ..+.|++.+ ++.... . .+++++.+.+.+ +|+++++ .+++++++++++|+| |+|++.
T Consensus 1 mki~~~~~~~~~~~-~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~ 70 (311)
T PRK08410 1 MKIVILDAKTLGDK-DLSVFEEFG-DFQIYP--T--TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICIT 70 (311)
T ss_pred CeEEEEecCCCChh-hHHHHhhCc-eEEEeC--C--CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEc
Confidence 35666655 4443 567777653 554332 1 356788888775 9999886 568999999999988 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEE
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGV 170 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~---~~g~~l~gktvGI 170 (398)
|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|..+.... ..+.+|+||||||
T Consensus 71 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGI 150 (311)
T PRK08410 71 ATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGI 150 (311)
T ss_pred ccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999975332110 1257999999999
Q ss_pred EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (398)
Q Consensus 171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T 250 (398)
||+|+||+.+|+++ ++|||+|++|||+..... .++ ...+++|++++||+|++|+|+|++|
T Consensus 151 iG~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T 210 (311)
T PRK08410 151 IGLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKT 210 (311)
T ss_pred ECCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchh
Confidence 99999999999997 899999999999753210 012 2358999999999999999999999
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCC---CceEEcCCCCCCcH
Q 015895 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM---KNAIVVPHIASASK 326 (398)
Q Consensus 251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~---~nvilTPHia~~T~ 326 (398)
+++||++.|++||+|++|||+|||++|||+||++||++|+|+ |+||||++||++ ++|||++ |||++|||+|++|.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~ 289 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK 289 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence 999999999999999999999999999999999999999999 999999999986 4789986 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 015895 327 WTREGMATLAALNVLGKIKGYP 348 (398)
Q Consensus 327 ea~~~~~~~~~~ni~~~l~g~~ 348 (398)
++++++...+++|+.+|++|++
T Consensus 290 e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 290 EARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999863
No 11
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-68 Score=526.58 Aligned_cols=303 Identities=28% Similarity=0.334 Sum_probs=262.0
Q ss_pred EEEEeCC--CCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 17 RVVSTKP--MPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 17 kvlv~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
||++.+. ++. ....+.|++...++.... ..+++++.+.+.+ +|+++++ .+++++++++++|+| |+|++.
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~ 73 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVA 73 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEc
Confidence 5666544 221 123456665444554432 1356888888875 9998876 467999999999988 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEE
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGV 170 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~---~~~g~~l~gktvGI 170 (398)
|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|..|... .+.+.+|+||||||
T Consensus 74 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgI 153 (317)
T PRK06487 74 ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGL 153 (317)
T ss_pred CccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEE
Confidence 999999999999999999999999999999999999999999999999999999997654321 22457899999999
Q ss_pred EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895 171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250 (398)
Q Consensus 171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T 250 (398)
||+|+||+.+|+++ ++|||+|++||++.... . . ...+++|++++||+|++|+|+|++|
T Consensus 154 iG~G~IG~~vA~~l-~~fgm~V~~~~~~~~~~---------------~-----~-~~~~l~ell~~sDiv~l~lPlt~~T 211 (317)
T PRK06487 154 LGHGELGGAVARLA-EAFGMRVLIGQLPGRPA---------------R-----P-DRLPLDELLPQVDALTLHCPLTEHT 211 (317)
T ss_pred ECCCHHHHHHHHHH-hhCCCEEEEECCCCCcc---------------c-----c-cccCHHHHHHhCCEEEECCCCChHH
Confidence 99999999999997 89999999999864321 0 1 1248999999999999999999999
Q ss_pred hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCC--CCceEEcCCCCCCcHH
Q 015895 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKW 327 (398)
Q Consensus 251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~--~~nvilTPHia~~T~e 327 (398)
+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||. +|||++|||+|++|.+
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e 291 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999865 68995 8999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCC
Q 015895 328 TREGMATLAALNVLGKIKGYPI 349 (398)
Q Consensus 328 a~~~~~~~~~~ni~~~l~g~~~ 349 (398)
++++++..+++|+.+|++|+++
T Consensus 292 ~~~~~~~~~~~ni~~~~~g~~~ 313 (317)
T PRK06487 292 ARQRIVGQLAENARAFFAGKPL 313 (317)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999875
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-67 Score=516.30 Aligned_cols=274 Identities=30% Similarity=0.384 Sum_probs=247.0
Q ss_pred CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHH
Q 015895 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (398)
Q Consensus 50 ~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~ 129 (398)
.+++|+.+.+.+ +|++++. .+++++++++++|+| |+|++.|+|+||||+++|+++||.|+|+||+++.+||||+++
T Consensus 33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~ 108 (314)
T PRK06932 33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG 108 (314)
T ss_pred CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence 467888888875 9988774 567999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHcCccCCCCC---CcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 015895 130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206 (398)
Q Consensus 130 l~L~~~R~~~~~~~~~~~g~~~~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~ 206 (398)
+||+++|+++.+++.+++|+|..+.. ..+.+.+|+||||||||+|+||+.+|+++ ++|||+|++||++.....
T Consensus 109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~--- 184 (314)
T PRK06932 109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC--- 184 (314)
T ss_pred HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence 99999999999999999999754321 11245789999999999999999999997 899999999997642110
Q ss_pred HhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
. ....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus 185 --------------~---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL 247 (314)
T PRK06932 185 --------------R---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL 247 (314)
T ss_pred --------------c---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence 0 01358999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEeccCCCCCCC-CCCCC----CCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 015895 287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP 348 (398)
Q Consensus 287 ~~g~i~gAalDV~~~EP~~-~~~L~----~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~ 348 (398)
++|+|+||+||||++||++ ++||| ++|||++|||+|++|.++++++...+++|+.+|++|++
T Consensus 248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999986 47898 58999999999999999999999999999999999864
No 13
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-65 Score=514.78 Aligned_cols=301 Identities=25% Similarity=0.291 Sum_probs=266.2
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhhhc
Q 015895 31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108 (398)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~ 108 (398)
+.|++.++++.+... ...+.+++.+.+.+ +|++|++. .+++++++++++|+| |+|++.|+|+||||+++|+++
T Consensus 62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~ 136 (385)
T PRK07574 62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH 136 (385)
T ss_pred HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence 567777888766432 23467888888875 99999864 467999999999998 999999999999999999999
Q ss_pred CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (398)
Q Consensus 109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f 188 (398)
||.|+|+|++|+.+||||++++||+++|++..+++.+++|.|..+. ....+.+|+||||||||+|+||+.+|+++ ++|
T Consensus 137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f 214 (385)
T PRK07574 137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF 214 (385)
T ss_pred CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence 9999999999999999999999999999999999999999965321 11246799999999999999999999997 799
Q ss_pred CcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcE
Q 015895 189 KMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (398)
Q Consensus 189 G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gai 267 (398)
||+|++|||+..+. .+. . .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 215 G~~V~~~dr~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 279 (385)
T PRK07574 215 DVKLHYTDRHRLPEEVEQ----------E-----LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY 279 (385)
T ss_pred CCEEEEECCCCCchhhHh----------h-----cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence 99999999986321 110 0 1122346899999999999999999999999999999999999999
Q ss_pred EEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (398)
Q Consensus 268 lIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g 346 (398)
|||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++|||+|+.|.+++++++..+++|+++|++|
T Consensus 280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G 359 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEG 359 (385)
T ss_pred EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999986 47999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 015895 347 YPIWGNP 353 (398)
Q Consensus 347 ~~~~~~v 353 (398)
+++.|.-
T Consensus 360 ~~~~~~~ 366 (385)
T PRK07574 360 RPIRDEY 366 (385)
T ss_pred CCCCCCc
Confidence 9998765
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-65 Score=513.91 Aligned_cols=300 Identities=23% Similarity=0.249 Sum_probs=263.7
Q ss_pred HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhhh
Q 015895 30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107 (398)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~ 107 (398)
.+.|++.++++.+.... ..+.+++.+.+.+ +|++|+.. .+++++++++++|+| |+|++.|+|+||||+++|++
T Consensus 68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~ 142 (386)
T PLN03139 68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA 142 (386)
T ss_pred HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence 45677778887665432 3567888888875 99999864 357999999999998 99999999999999999999
Q ss_pred cCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 015895 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (398)
Q Consensus 108 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~ 187 (398)
+||.|+|+||+|+.+||||++++||++.|++.++++.+++|.|.. ......+.+|.||||||||+|+||+.+|+++ ++
T Consensus 143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~-~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a 220 (386)
T PLN03139 143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV-AGIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP 220 (386)
T ss_pred CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc-ccccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence 999999999999999999999999999999999999999998642 1112356899999999999999999999998 79
Q ss_pred CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcE
Q 015895 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267 (398)
Q Consensus 188 fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gai 267 (398)
|||+|++||++..+.... .. .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus 221 fG~~V~~~d~~~~~~~~~---------~~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 286 (386)
T PLN03139 221 FNCNLLYHDRLKMDPELE---------KE-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL 286 (386)
T ss_pred CCCEEEEECCCCcchhhH---------hh-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence 999999999975321100 00 1122345899999999999999999999999999999999999999
Q ss_pred EEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (398)
Q Consensus 268 lIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g 346 (398)
|||+|||++||++||+++|++|+|+||+||||++||++ ++|||.+|||++|||+||.|.+++++++..+++|+.+|++|
T Consensus 287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G 366 (386)
T PLN03139 287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG 366 (386)
T ss_pred EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999986 47999999999999999999999999999999999999999
Q ss_pred CCCC
Q 015895 347 YPIW 350 (398)
Q Consensus 347 ~~~~ 350 (398)
+++.
T Consensus 367 ~~~~ 370 (386)
T PLN03139 367 EDFP 370 (386)
T ss_pred CCCC
Confidence 8754
No 15
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.2e-64 Score=504.54 Aligned_cols=323 Identities=25% Similarity=0.297 Sum_probs=267.3
Q ss_pred eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccC
Q 015895 10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG 86 (398)
Q Consensus 10 ~~~~~~~kvlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~ 86 (398)
+-.++++|||++.+..+. .| .+.++..+ +..+. ..+.+|+.+.+.+ +|+++++ ..++++++++++|+|
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~e~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L- 83 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYP--FIQVD----AVAREDVPDVIAN-YDICVPK-MMRLDADIIARASQM- 83 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCC--eeEec----CCCHHHHHHHhcC-CcEEEEC-CCCCCHHHHhcCCCc-
Confidence 445677899999876653 12 34444333 22222 1356788887774 9998876 457999999999988
Q ss_pred CceEEEeeccccccCchHhhhcCceEEecCCC---CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCccccccc
Q 015895 87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL 163 (398)
Q Consensus 87 ~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l 163 (398)
|+|++.|+|+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.+++|.| .. ..+.+|
T Consensus 84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w---~~--~~~~~l 157 (347)
T PLN02928 84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL---GE--PIGDTL 157 (347)
T ss_pred -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCc---cc--ccccCC
Confidence 9999999999999999999999999999985 78999999999999999999999999999984 32 356799
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
+|||+||||+|+||+.+|+++ ++|||+|++|||+.................... .. .....+++|++++||+|++|
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLV-DE--KGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhccccccccccc-cc--cCcccCHHHHHhhCCEEEEC
Confidence 999999999999999999997 799999999999753321100000000000000 00 01246899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIA 322 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia 322 (398)
+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|
T Consensus 234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia 313 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVA 313 (347)
T ss_pred CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999975 57999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 015895 323 SASKWTREGMATLAALNVLGKIKGYPIWG 351 (398)
Q Consensus 323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~ 351 (398)
+.|.+++++++..+++|+.+|++|+++.|
T Consensus 314 ~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347)
T PLN02928 314 GVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347)
T ss_pred CChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999999999999998754
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.9e-64 Score=495.94 Aligned_cols=313 Identities=27% Similarity=0.401 Sum_probs=268.8
Q ss_pred eEEEEeCCCCc--hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 16 YRVVSTKPMPG--TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 16 ~kvlv~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
|||++.+.-+. +-..+.+++.++++... +. .++++. .+.+. ++|+++++..+++++++++++|+.++|+|++.
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~ 76 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS--KE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR 76 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc--CC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence 77877654332 21344556666555432 22 356665 55665 49999998777899999999984345999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (398)
|+|+|+||+++|+++||.|+|+|++++++||||++++||++.|+++.+++.+++|.|. |.+. ..|++|+|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~ 154 (330)
T PRK12480 77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT 154 (330)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999874 6432 3578999999999999
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (398)
Q Consensus 174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l 253 (398)
|+||+.+|+++ ++|||+|++||++....... .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~~------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 155 GRIGAATAKIY-AGFGATITAYDAYPNKDLDF------------------LTYKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred CHHHHHHHHHH-HhCCCEEEEEeCChhHhhhh------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 99999999997 79999999999987542110 012358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----------C----CCCCCCCceEEcC
Q 015895 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP 319 (398)
Q Consensus 254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----------~----~~L~~~~nvilTP 319 (398)
++++.|++||+|++|||+|||.+||++||+++|++|+++||+||||++||+. + +|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999952 1 2699999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
|+|+.|.++++++...+++|+.+|++|+...+.||
T Consensus 296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 330 (330)
T PRK12480 296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN 330 (330)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 99999999999999999999999999999988874
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-63 Score=493.24 Aligned_cols=317 Identities=24% Similarity=0.380 Sum_probs=272.5
Q ss_pred CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
++++++++++.+.. +++.+.+. +++++..... ..++ |..+.+. ++|++++++.+++++++++++|++++|+|++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~ 76 (332)
T PRK08605 2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR 76 (332)
T ss_pred cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence 56788888876654 66666553 2333322111 2344 4456665 49999998888999999999998667999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (398)
|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|. |.+. ..|++|+|++|||||+
T Consensus 77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~ 154 (332)
T PRK08605 77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT 154 (332)
T ss_pred ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999874 7542 3578999999999999
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (398)
Q Consensus 174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l 253 (398)
|+||+++|++++++|||+|++||++....... . .....++++++++||+|++|+|++++|+++
T Consensus 155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l 217 (332)
T PRK08605 155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL 217 (332)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence 99999999997458999999999987542111 0 112358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--C-CC-----------CCCCCCceEEcC
Q 015895 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M-KP-----------GLSEMKNAIVVP 319 (398)
Q Consensus 254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~-~~-----------~L~~~~nvilTP 319 (398)
++++.|+.||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||+ + ++ +||++|||++||
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 297 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP 297 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence 999999999999999999999999999999999999999999999999983 2 22 499999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895 320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
|+|++|.++++++...+++|+.+|++|++..+.||
T Consensus 298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~ 332 (332)
T PRK08605 298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN 332 (332)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence 99999999999999999999999999999998874
No 18
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=5.1e-62 Score=475.54 Aligned_cols=298 Identities=38% Similarity=0.540 Sum_probs=260.3
Q ss_pred CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCceEEEeeccccccCchHhhhcCceEEec
Q 015895 37 DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNT 115 (398)
Q Consensus 37 ~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~-~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~ 115 (398)
+++.......+...+.+++...+.+...++.+.....++.+.+.++ |++ |+|.++|+|+||||+++|++|||.|+|+
T Consensus 36 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nv 113 (336)
T KOG0069|consen 36 GYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANV 113 (336)
T ss_pred cccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEecc
Confidence 3333333333334556666656554345555555667888888887 877 9999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE
Q 015895 116 PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (398)
Q Consensus 116 p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~ 195 (398)
|+.++.+|||++++++|.++|++..+++++++|.| .|....+.|..+.||||||+|+|+||+.+|+|| ++||+.+.|+
T Consensus 114 p~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~ 191 (336)
T KOG0069|consen 114 PDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYH 191 (336)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeee
Confidence 99999999999999999999999999999999999 788877888999999999999999999999998 7999889998
Q ss_pred cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 196 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
+|++....+. ..+ . ....+++|++++||+|++|||+|++|+|+||+++|++||+|++|||++||.
T Consensus 192 ~r~~~~~~~~--~~~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ 256 (336)
T KOG0069|consen 192 SRTQLPPEEA--YEY-------Y------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGA 256 (336)
T ss_pred cccCCchhhH--HHh-------c------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccc
Confidence 8876532111 001 1 113589999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 015895 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNP 353 (398)
Q Consensus 276 ~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~v 353 (398)
++|++++++||++|++.||+||||++||.+++||++++||++|||+|++|.+++++|+..++.|+.+++.|+++...+
T Consensus 257 iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 257 IIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred cccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 999999999999999999999999999977889999999999999999999999999999999999999999987766
No 19
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=2.4e-59 Score=468.26 Aligned_cols=278 Identities=27% Similarity=0.363 Sum_probs=242.4
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (398)
Q Consensus 16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~ 95 (398)
||||+.+.++. ..+.+.+.+ ++.... ....+.+++ . ++|++++++.+++++++++ .+++ |+|+++++
T Consensus 1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~ 67 (378)
T PRK15438 1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA 67 (378)
T ss_pred CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence 68999988863 356676653 665543 334565553 3 5999999999999999986 6776 99999999
Q ss_pred cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (398)
Q Consensus 96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~ 175 (398)
|+||||+++++++||.|+|+||+|+.+||||++++||++.|+. |.+|.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~ 126 (378)
T PRK15438 68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN 126 (378)
T ss_pred cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999951 2479999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh----hh
Q 015895 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY 251 (398)
Q Consensus 176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~----T~ 251 (398)
||+.+|+++ ++|||+|++|||..... +. .....++++++++||+|++|+|+|++ |+
T Consensus 127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~----~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~ 186 (378)
T PRK15438 127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD----EGDFRSLDELVQEADILTFHTPLFKDGPYKTL 186 (378)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc---------------cc----ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence 999999997 79999999999854321 00 01235899999999999999999996 99
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (398)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~ 331 (398)
+|||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+..++ |+|||+||+|.+++.+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~ 265 (378)
T PRK15438 187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR 265 (378)
T ss_pred cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888988665 9999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 015895 332 MATLAALNVLGKIKGYPI 349 (398)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~ 349 (398)
+..++++|+.+|+ |.+.
T Consensus 266 ~~~~~~~~l~~~~-~~~~ 282 (378)
T PRK15438 266 GTTQVFEAYSKFI-GHEQ 282 (378)
T ss_pred HHHHHHHHHHHHH-cCcc
Confidence 9999999999998 5554
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-58 Score=464.45 Aligned_cols=283 Identities=25% Similarity=0.327 Sum_probs=244.7
Q ss_pred eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895 16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95 (398)
Q Consensus 16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~ 95 (398)
||||+.+.++- ..+.+.+.+ ++.... ...++.+. +. ++|++++++.+++++++++ .++| |+|+++++
T Consensus 1 mkI~~d~~~p~--~~~~~~~~~-~v~~~~--~~~~~~~~----l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~ 67 (381)
T PRK00257 1 MKIVADENIPL--LDAFFAGFG-EIRRLP--GRAFDRAA----VR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI 67 (381)
T ss_pred CEEEEecCchh--HHHHHhhCC-cEEEcC--CcccCHHH----hC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence 78999998863 245555543 555443 22344443 33 5999999998999999997 4766 99999999
Q ss_pred cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895 96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR 175 (398)
Q Consensus 96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~ 175 (398)
|+||||+++++++||.|+|+||+|+.+||||+++++|+++|+ .|.++.||||||||+|+
T Consensus 68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~ 126 (381)
T PRK00257 68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH 126 (381)
T ss_pred cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence 999999999999999999999999999999999999999884 13579999999999999
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh----hhh
Q 015895 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY 251 (398)
Q Consensus 176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~----~T~ 251 (398)
||+.+|+++ ++|||+|++|||..... + + .....+++|++++||+|++|+|+|+ +|+
T Consensus 127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~ 186 (381)
T PRK00257 127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR 186 (381)
T ss_pred HHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence 999999997 79999999999864321 0 0 1123589999999999999999999 599
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 331 (398)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~ 331 (398)
+|||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+.. |+++|||+||+|.+++.+
T Consensus 187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR 265 (381)
T ss_pred ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888889985 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC
Q 015895 332 MATLAALNVLGKIKGYPIWGNP 353 (398)
Q Consensus 332 ~~~~~~~ni~~~l~g~~~~~~v 353 (398)
+..++.+|+.+|+.+.+.....
T Consensus 266 ~~~~~~~nl~~~~~~~~~~~~~ 287 (381)
T PRK00257 266 GTAQIYQALCRFFGIPARVSLT 287 (381)
T ss_pred HHHHHHHHHHHHHcCCCccchh
Confidence 9999999999999987654443
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=2.6e-58 Score=452.77 Aligned_cols=296 Identities=20% Similarity=0.238 Sum_probs=244.8
Q ss_pred EEEEeCCC-CchHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 17 kvlv~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
.+++..+. ..+.|.+.|++. ++++..... ++ . .++|+++++.. +.+.++ .++| |+|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-------~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~ 63 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-------GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFAL 63 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-------CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence 45544433 444488888875 333332211 11 1 24899988753 456775 4776 999999
Q ss_pred eccccccCchH-----hhhcCceEEecCC-CCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895 94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (398)
Q Consensus 94 g~G~d~iD~~~-----~~~~gI~V~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt 167 (398)
|+|+|++|.+. +..+||.|+|+++ +++.+||||++++||++.|+++++.+.+++|.|.. ..+.+++|||
T Consensus 64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~-----~~~~~l~g~t 138 (312)
T PRK15469 64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP-----LPEYHREDFT 138 (312)
T ss_pred ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC-----CCCCCcCCCE
Confidence 99999998332 3458999999975 68999999999999999999999999999998542 1346899999
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 247 (398)
|||||+|+||+.+|+++ ++|||+|++||++.+... +.. .+....++++++++||+|++|+|+|
T Consensus 139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt 201 (312)
T PRK15469 139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNT 201 (312)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCC
Confidence 99999999999999997 799999999998764310 000 0112358999999999999999999
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcH
Q 015895 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326 (398)
Q Consensus 248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ 326 (398)
++|+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +|||++|||++|||+|+.|.
T Consensus 202 ~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 202 PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred HHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999864 79999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895 327 WTREGMATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 327 ea~~~~~~~~~~ni~~~l~g~~~~~~vn 354 (398)
++ ++...+.+|+.+|++|+++.|.||
T Consensus 282 ~~--~~~~~~~~n~~~~~~g~~~~~~V~ 307 (312)
T PRK15469 282 PA--EAVEYISRTIAQLEKGERVCGQVD 307 (312)
T ss_pred HH--HHHHHHHHHHHHHHcCCCCcccCC
Confidence 74 578899999999999999999884
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3e-57 Score=443.12 Aligned_cols=286 Identities=21% Similarity=0.302 Sum_probs=237.5
Q ss_pred eEEEEeCCCCchHHHHHHHh--CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895 16 YRVVSTKPMPGTRWINLLIE--QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93 (398)
Q Consensus 16 ~kvlv~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~ 93 (398)
|++++..++++. ..+.+.+ .++++.. .++ .. ++|+++++.. .-..++| |+|++.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-----------~~-~a~~~~~~~~-------~~~~~~L--k~I~~~ 56 (303)
T PRK06436 1 MNVYVNFPMSKK-LLEICRDILDLDDVHW--YPD-----------YY-DAEAILIKGR-------YVPGKKT--KMIQSL 56 (303)
T ss_pred CeEEEEccCCHH-HHHHHHhhcccceeEe--ccc-----------cC-CCCEEEecCC-------cCCCCCe--EEEEEC
Confidence 346666777764 5565543 2333332 111 11 4788765532 1234666 999999
Q ss_pred eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895 94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173 (398)
Q Consensus 94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl 173 (398)
|+|+|+||+++|+++||.++| +|+++.+||||++++||+++|++++.++.+++|+|.. . .+.+|+||||||||+
T Consensus 57 ~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~---~--~~~~L~gktvgIiG~ 130 (303)
T PRK06436 57 SAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQ---S--PTKLLYNKSLGILGY 130 (303)
T ss_pred CcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC---C--CCCCCCCCEEEEECc
Confidence 999999999999998887777 5889999999999999999999999999999998543 2 357999999999999
Q ss_pred ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253 (398)
Q Consensus 174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l 253 (398)
|+||+++|+++ ++|||+|++|||+..+. +.. ....++++++++||+|++|+|+|++|+++
T Consensus 131 G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~----~~~~~l~ell~~aDiv~~~lp~t~~T~~l 190 (303)
T PRK06436 131 GGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS----SIYMEPEDIMKKSDFVLISLPLTDETRGM 190 (303)
T ss_pred CHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc----cccCCHHHHHhhCCEEEECCCCCchhhcC
Confidence 99999999997 89999999999975321 110 11358999999999999999999999999
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC-CCcHHHHHHH
Q 015895 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA-SASKWTREGM 332 (398)
Q Consensus 254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia-~~T~ea~~~~ 332 (398)
|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||++.+. .+|||++|||++ +.|.++++++
T Consensus 191 i~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~ 268 (303)
T PRK06436 191 INSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPA 268 (303)
T ss_pred cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986532 689999999986 5899999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCC
Q 015895 333 ATLAALNVLGKIKGYPIWGNPN 354 (398)
Q Consensus 333 ~~~~~~ni~~~l~g~~~~~~vn 354 (398)
...+++|+.+|++|++ .|.||
T Consensus 269 ~~~~~~ni~~~~~g~~-~~~V~ 289 (303)
T PRK06436 269 VALAFENIKNFFEGKP-KNIVR 289 (303)
T ss_pred HHHHHHHHHHHHcCCC-CceEc
Confidence 9999999999999987 57774
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=5.5e-48 Score=351.06 Aligned_cols=177 Identities=42% Similarity=0.570 Sum_probs=152.7
Q ss_pred HHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 015895 128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207 (398)
Q Consensus 128 l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~ 207 (398)
+++||++.|+++.+++.+++|.| |.+....+.+++|+||||||+|+||+.+|+++ ++|||+|++|||+..+....
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-- 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-- 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence 68999999999999999999997 34445678899999999999999999999997 89999999999998764310
Q ss_pred hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
.. .++ ...+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus 76 -------~~-----~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 76 -------DE-----FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -------HH-----TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -------cc-----ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 00 112 34689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCC
Q 015895 288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA 322 (398)
Q Consensus 288 ~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia 322 (398)
+|++.||+||||++||++. +|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 9999999999999999875 5999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.98 E-value=2.3e-32 Score=264.92 Aligned_cols=280 Identities=28% Similarity=0.371 Sum_probs=240.0
Q ss_pred CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHH
Q 015895 50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS 129 (398)
Q Consensus 50 ~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~ 129 (398)
.+..|+.+.+-.++-+-+...+..++++-+++.+.+ +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++.
T Consensus 61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~ 138 (435)
T KOG0067|consen 61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC 138 (435)
T ss_pred cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence 466777765544455555555667889999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHcCccC-CCCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH
Q 015895 130 LSLAAARRIVEADEFMRAGLYD-GWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205 (398)
Q Consensus 130 l~L~~~R~~~~~~~~~~~g~~~-~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~ 205 (398)
++|.++|+.....+.+++|.|. .|... ......++|.++|++|+|+.|+.++.+ |++||..|+.|||+...-.+.
T Consensus 139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~ 217 (435)
T KOG0067|consen 139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK 217 (435)
T ss_pred HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence 9999999999999999999863 22211 112256899999999999999999999 599999999999998764433
Q ss_pred HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 015895 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285 (398)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~a 285 (398)
+ .+...+.++.+++.++|.+++|+.+++.+.++|+.-.+.+|+.|++++|++||+++|+++|.++
T Consensus 218 ~---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqa 282 (435)
T KOG0067|consen 218 S---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQA 282 (435)
T ss_pred h---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhh
Confidence 1 2334456799999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccEEEeccCCCCCC--CCCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC---CCCCCC
Q 015895 286 LKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP---IWGNPN 354 (398)
Q Consensus 286 L~~g~i~gAalDV~~~EP~--~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~---~~~~vn 354 (398)
|+.|++.+++ |. ...||.+-||.++|||.++.+..+...+.+.++..+++...|.. +++.||
T Consensus 283 Lk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn 349 (435)
T KOG0067|consen 283 LKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN 349 (435)
T ss_pred hccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence 9999999998 22 12478899999999999999999999999999999999998854 566664
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=4.9e-21 Score=195.70 Aligned_cols=170 Identities=19% Similarity=0.299 Sum_probs=136.5
Q ss_pred eeccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895 93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (398)
Q Consensus 93 ~g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII 171 (398)
.++|+..+- ++.....+|+|+|+|++++.++||+++++++++... .+|.+ +.++.||++||+
T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~-----------~~~LaGKtVgVI 260 (476)
T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT-----------DVMIAGKTVVVC 260 (476)
T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc-----------CCCcCCCEEEEE
Confidence 367776552 233344689999999999999999999999998843 34443 257999999999
Q ss_pred ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (398)
Q Consensus 172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~ 251 (398)
|+|.||+.+|+++ ++|||+|+++++++....+.. . .++. ..+++++++.||+|++|+ .|+
T Consensus 261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~-----~G~~-~~~leell~~ADIVI~at----Gt~ 320 (476)
T PTZ00075 261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------M-----EGYQ-VVTLEDVVETADIFVTAT----GNK 320 (476)
T ss_pred CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------h-----cCce-eccHHHHHhcCCEEEECC----Ccc
Confidence 9999999999997 799999999987765432210 0 1222 247999999999999985 478
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC
Q 015895 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK 306 (398)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~ 306 (398)
++|+++.|+.||+|++|||++|+ |++.++++|+++. ++|+++.||...
T Consensus 321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 99999999999999999999999 7888889998753 799999999754
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.85 E-value=2.3e-20 Score=161.49 Aligned_cols=101 Identities=32% Similarity=0.441 Sum_probs=88.1
Q ss_pred EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895 18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (398)
Q Consensus 18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~ 97 (398)
||+++++++. .++.|++ ++++++.. ..+.+++.+.+.+ +|+++++..+++++++++.+|+| |+|++.|+|+
T Consensus 1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~ 71 (133)
T PF00389_consen 1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV 71 (133)
T ss_dssp EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence 7899999875 6899988 66887765 3578899998875 99999998888999999999988 9999999999
Q ss_pred cccCchHhhhcCceEEecCCCCCchHHHHH
Q 015895 98 NNVDVNAANKYGIAVGNTPGVLTETTAELA 127 (398)
Q Consensus 98 d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~ 127 (398)
|+||+++|+++||.|+|+||+++.+||||+
T Consensus 72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999999999
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.83 E-value=1.6e-19 Score=175.92 Aligned_cols=200 Identities=19% Similarity=0.179 Sum_probs=145.4
Q ss_pred HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHHhcCCCcEEEec----------------CCccccHHHHHHhhccCC
Q 015895 29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIALIGDKCDGVIGQ----------------LTEDWGETLFAALSRAGG 87 (398)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~-----~~~~eel~~~~~~~~d~vi~~----------------~~~~~~~~~l~~~~~l~~ 87 (398)
..+.|.+.|+.+..+-.+.. .....++.+..-.++|++|.- ....+++++++++|.
T Consensus 16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~--- 92 (287)
T TIGR02853 16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG--- 92 (287)
T ss_pred HHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence 45667788888766533211 011222222211248888842 123467888888872
Q ss_pred ceEEEeeccccccCch-HhhhcCceEE------ecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc
Q 015895 88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG 160 (398)
Q Consensus 88 k~i~~~g~G~d~iD~~-~~~~~gI~V~------n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g 160 (398)
++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++.+++.. .+
T Consensus 93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~ 146 (287)
T TIGR02853 93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD 146 (287)
T ss_pred --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC
Confidence 45566788888888 9999999999 999999999999999977642 11
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+++|++++|+|+|.||+.+|++| +++|++|++++|+....... ...+... ....+++++++++|+|
T Consensus 147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~---------~~~g~~~---~~~~~l~~~l~~aDiV 213 (287)
T TIGR02853 147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI---------TEMGLIP---FPLNKLEEKVAEIDIV 213 (287)
T ss_pred CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHCCCee---ecHHHHHHHhccCCEE
Confidence 379999999999999999999998 79999999999987542111 1112111 1224578889999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
++|+|.+ +++++.++.||+++++||++...
T Consensus 214 int~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 214 INTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred EECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 9999963 77889999999999999998843
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.66 E-value=6.5e-15 Score=144.29 Aligned_cols=196 Identities=19% Similarity=0.168 Sum_probs=142.4
Q ss_pred HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhh
Q 015895 29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS 83 (398)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~---------~~eel~~~~~~~~d~vi~~~~----------------~~~~~~~l~~~~ 83 (398)
..+.|.+.|+++.+...++... +.++ .+. ++|+++.-.+ ..++++.++.+|
T Consensus 17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 4677888898887654332211 2223 233 4898885311 124678999999
Q ss_pred ccCCceEEEeeccccccCchHhhhcCceEEecCCC------CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCc
Q 015895 84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157 (398)
Q Consensus 84 ~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~------~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~ 157 (398)
+. ..+ ..|.+.+++| +.|.++||.+.+.+.. |+.++||.++.+.+. +
T Consensus 93 ~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~--------------------- 145 (296)
T PRK08306 93 EH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H--------------------- 145 (296)
T ss_pred CC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence 86 533 3699999998 8899999999998864 889999997775432 1
Q ss_pred ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
.+.+++|++++|||+|.+|+.++++| +++|++|.++|+++..... ....+.. .....++.+.++++
T Consensus 146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~---------~~~~G~~---~~~~~~l~~~l~~a 211 (296)
T PRK08306 146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR---------ITEMGLS---PFHLSELAEEVGKI 211 (296)
T ss_pred -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH---------HHHcCCe---eecHHHHHHHhCCC
Confidence 11368899999999999999999997 7999999999998754211 1112211 11224677889999
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
|+|+.++|. .+++++.++.|++++++||++..
T Consensus 212 DiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 212 DIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 999999983 56889999999999999999863
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.61 E-value=1.8e-15 Score=154.66 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=101.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..+.||+++|+|+|.||+.+|+++ ++|||+|+++++++....+.. . .++. ..+++++++.+|+|
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~---------~-----~G~~-vv~leEal~~ADVV 313 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQAL---------M-----EGYQ-VLTLEDVVSEADIF 313 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHH---------h-----cCCe-eccHHHHHhhCCEE
Confidence 458999999999999999999997 899999999998765422210 0 1122 23689999999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC-CchhcHHHHHHH--HhcCCccEEEeccCCCCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR-G~~vde~aL~~a--L~~g~i~gAalDV~~~EP 303 (398)
+.+ ..++++|+.+.|+.||+|++|+|++| +..||+++|.++ ++.+.+. +.+|+|+.|-
T Consensus 314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 973 36789999999999999999999999 679999999998 8988887 9999998763
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.61 E-value=3.3e-14 Score=144.13 Aligned_cols=121 Identities=26% Similarity=0.288 Sum_probs=101.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+. .. .++ ...+++++++.+|+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A---------~~-----~G~-~v~~leeal~~aDVV 254 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEA---------AM-----DGF-RVMTMEEAAKIGDIF 254 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHH---------Hh-----cCC-EeCCHHHHHhcCCEE
Confidence 358999999999999999999997 89999999998876543221 01 122 224678899999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCccEEEeccCCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED 301 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i~gAalDV~~~ 301 (398)
+.++ .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus 255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 8765 3688999999999999999999999998 9999999999888888999999874
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.48 E-value=1.3e-13 Score=135.04 Aligned_cols=93 Identities=26% Similarity=0.334 Sum_probs=75.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..|+||||||||+|+||+.+|++| ++||++|++|++..... +. ....+ +. ..+++|++++||+|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~~-v~sl~Eaak~ADVV 75 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----FE-VMSVSEAVRTAQVV 75 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----CE-ECCHHHHHhcCCEE
Confidence 479999999999999999999998 79999999998653221 11 01112 22 24899999999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
++|+|+ ++++++++.+.++.||+|++|+-
T Consensus 76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF 104 (335)
T ss_pred EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence 999997 77899999999999999998865
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.47 E-value=3.1e-12 Score=130.50 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=111.6
Q ss_pred eecccccc-CchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895 93 MAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171 (398)
Q Consensus 93 ~g~G~d~i-D~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII 171 (398)
.++|+..+ ..+...+.+++|.|++.+++.+..|...+.-.+....+. + ..+..+.|++++|+
T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------r-----------at~~~l~Gk~VlVi 218 (425)
T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------R-----------ATNVLIAGKVVVVA 218 (425)
T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------H-----------hccCCCCCCEEEEE
Confidence 46677655 333334578999999999998865544332222221111 0 11235899999999
Q ss_pred ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251 (398)
Q Consensus 172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~ 251 (398)
|+|.||+.+|+++ +++|++|+++|+++....+.. . .++. ..+++++++.+|+|+.++ .+.
T Consensus 219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~-----~G~~-v~~l~eal~~aDVVI~aT----G~~ 278 (425)
T PRK05476 219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------M-----DGFR-VMTMEEAAELGDIFVTAT----GNK 278 (425)
T ss_pred CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------h-----cCCE-ecCHHHHHhCCCEEEECC----CCH
Confidence 9999999999997 799999999998875432210 0 1222 246889999999998876 457
Q ss_pred hhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 015895 252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (398)
Q Consensus 252 ~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~ 284 (398)
++|+.+.|..||+|++++|+++... +|.++|.+
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 7899999999999999999999876 77777654
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.39 E-value=1.9e-12 Score=115.92 Aligned_cols=116 Identities=24% Similarity=0.269 Sum_probs=87.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|||||+|.||+.+|++| ...|.+|.+||+++.... .+ ...+ .....++.|++++||+|++++|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~-~~--------~~~g-----~~~~~s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAE-AL--------AEAG-----AEVADSPAEAAEQADVVILCVP 66 (163)
T ss_dssp BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHH-HH--------HHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhh-hh--------HHhh-----hhhhhhhhhHhhcccceEeecc
Confidence 5899999999999999998 578999999999875432 21 1122 3456799999999999999999
Q ss_pred CChhhhhhcc-HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc
Q 015895 246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (398)
Q Consensus 246 lt~~T~~li~-~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV 298 (398)
..++++.++. .+.++.+++|.++||++..++-+...+.+.+.+..+ ..+|.
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda 118 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA 118 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence 8888888763 237888999999999999999999999999987553 44553
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.36 E-value=5.3e-12 Score=122.34 Aligned_cols=124 Identities=23% Similarity=0.176 Sum_probs=100.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++||+||+|.||+.+|++| ..-|+.|.+||+++.+..+. +...| .....+..|+.+.||+|++|+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence 4799999999999999998 68999999999998763322 12223 3345678899999999999999
Q ss_pred CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
.+++.+.++. ...++.+|+|+++||+|+.+....+.+.++++...+...=-=|....+
T Consensus 67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~ 126 (286)
T COG2084 67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP 126 (286)
T ss_pred CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence 9999999885 679999999999999999999999999999998865443222444444
No 35
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.31 E-value=1.3e-11 Score=109.78 Aligned_cols=103 Identities=29% Similarity=0.423 Sum_probs=74.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..+.||++.|+|||.+|+.+|++| +++|++|.+++..|-..++...+ +++ ..+++|+++++|++
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~d--------------Gf~-v~~~~~a~~~adi~ 82 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMD--------------GFE-VMTLEEALRDADIF 82 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHT--------------T-E-EE-HHHHTTT-SEE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhc--------------CcE-ecCHHHHHhhCCEE
Confidence 569999999999999999999997 89999999999998776655333 232 35799999999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV 283 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~ 283 (398)
+.++. .+++|..+.|.+||+|+++.|++.-.. +|-+.|.
T Consensus 83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 98875 377889999999999999999988654 5555443
No 36
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.27 E-value=3.6e-11 Score=117.35 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=89.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL 246 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Pl 246 (398)
+|||||+|.||+.+|+++ ...|++|++||+++... +.+ ...+ .....++++++++||+|++|+|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~aDivi~~vp~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAG-----AVTAETARQVTEQADVIFTMVPD 65 (291)
T ss_pred CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence 489999999999999998 57899999999987542 221 1122 22245788999999999999998
Q ss_pred Chhhhhhc-c-HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 247 t~~T~~li-~-~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
++.++.++ + ...+..+++|.++||++++.+.+.+++.+.+++..+.
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 88887775 3 3467889999999999999999999999999886543
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.26 E-value=4.4e-11 Score=116.86 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=95.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|||||+|.||+.+|+.+ ...|++|++||+++.... .. ...+ .....++++++++||+|++|+|
T Consensus 3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~-~~--------~~~g-----~~~~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVA-EV--------IAAG-----AETASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 5799999999999999998 578999999999875421 11 1112 1234578999999999999999
Q ss_pred CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
.+.+++.++. .+.+..+++|.++||+++..+...+++.+.+.+..+...-.-|+..+|
T Consensus 68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 8888887764 346788999999999999999888999999987655443334555444
No 38
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.24 E-value=3.7e-10 Score=115.14 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=83.3
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
+..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++...... ...| +. ..++++.+..+|+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~~-~~~~~e~v~~aDV 260 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----YE-VMTMEEAVKEGDI 260 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----CE-EccHHHHHcCCCE
Confidence 4568999999999999999999996 89999999999876542211 1112 22 2356788899999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE 284 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~ 284 (398)
|+.+.. +.++++.+.|..||+|++++|++++.+ +|..+|..
T Consensus 261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 998764 467888889999999999999999876 78777764
No 39
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.20 E-value=1.2e-10 Score=114.22 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=90.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|||||+|.||..+|+++ ...|.+|.+||+++... +.+ ...+ .....++.+++++||+|++|+|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~--------~~~g-----~~~~~s~~~~~~~aDvVi~~vp 66 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DAL--------VDKG-----ATPAASPAQAAAGAEFVITMLP 66 (296)
T ss_pred CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHcC-----CcccCCHHHHHhcCCEEEEecC
Confidence 3799999999999999998 57899999999987542 221 1112 2234678899999999999999
Q ss_pred CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
....++.++. ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus 67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 8777777764 3467789999999999999999999999999887654
No 40
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.20 E-value=1.5e-10 Score=113.61 Aligned_cols=114 Identities=19% Similarity=0.285 Sum_probs=91.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l 242 (398)
++|||||+|+||+.+|++| ...|.+|++||++++.. +. +...+ .....++++++++ +|+|++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~--------~~~~g-----~~~~~s~~~~~~~~~~advVi~ 65 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DV--------AGKLG-----ITARHSLEELVSKLEAPRTIWV 65 (299)
T ss_pred CEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH--------HHHCC-----CeecCCHHHHHHhCCCCCEEEE
Confidence 3799999999999999998 57899999999987542 11 11112 2234678898876 699999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD 297 (398)
|+|..+.++.++ .+.+..+++|.++||++++...+..++.+.+++..+. .+|
T Consensus 66 ~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299)
T PRK12490 66 MVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299)
T ss_pred EecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence 999887888888 4677889999999999999999999999999876643 466
No 41
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.10 E-value=7.2e-10 Score=108.89 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=89.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l 242 (398)
++|||||+|.||+.+|++| ...|.+|.+||+++.... .+ ...+ .....+++|+++. +|+|++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~ 65 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVE-AL--------AEEG-----ATGADSLEELVAKLPAPRVVWL 65 (301)
T ss_pred CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HH--------HHCC-----CeecCCHHHHHhhcCCCCEEEE
Confidence 4799999999999999998 578999999999875432 11 1112 2234578888876 699999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
++|..+.++.++ ...+..+++|.++||++++......++.+.+++..+.
T Consensus 66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 999877888877 4677889999999999999999999999999887654
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.07 E-value=1.2e-09 Score=113.84 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=100.2
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH 243 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l~ 243 (398)
+|||||+|.||+.+|++| ...|.+|.+|||+++.. +.+.+.. ...|... .....+++|+++. +|+|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence 699999999999999998 57899999999987653 2221100 0012111 1134678888875 9999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
+|..+.+..++ ...+..+++|.++||+++...-+...+.+.+++..+.....=|...++
T Consensus 80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 99999999988 568889999999999999999999999999998877766666776655
No 43
>PLN02712 arogenate dehydrogenase
Probab=99.05 E-value=1.4e-09 Score=117.35 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=85.9
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cC
Q 015895 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA 237 (398)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~a 237 (398)
.|.++.+++|||||+|.||+.+|+.+ +.+|++|++||++...... ...+ .....+++++++ .|
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~~a----------~~~G-----v~~~~~~~el~~~~a 426 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSDEA----------QKLG-----VSYFSDADDLCEEHP 426 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHHHH----------HHcC-----CeEeCCHHHHHhcCC
Confidence 46788999999999999999999998 6899999999997532111 1112 223457888776 59
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|+|++|+|. ..+..++.+-....||+|++++|++.++-...+++.+.+..
T Consensus 427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 999999994 67888887655557999999999999875555555555544
No 44
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.04 E-value=8.5e-10 Score=109.30 Aligned_cols=119 Identities=23% Similarity=0.232 Sum_probs=85.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..|+||+|||||+|+||+++|+.| +.+|++|+++++......+. ....+ +.. .+.++++++||+|
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~~-~s~~eaa~~ADVV 77 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FEV-LTVAEAAKWADVI 77 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Cee-CCHHHHHhcCCEE
Confidence 468999999999999999999998 79999999887764332111 01112 222 4889999999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~ 304 (398)
++++|.+.. ..+++++.+..|++|++| -.+.|--+. .+ ....+..+||+...|.
T Consensus 78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~--~~------~~~p~~~~~Vi~vaPn 131 (330)
T PRK05479 78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIH--FG------QIVPPADVDVIMVAPK 131 (330)
T ss_pred EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChh--hc------eeccCCCCcEEEeCCC
Confidence 999997654 778778888999999988 556662221 11 0113456788887774
No 45
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.01 E-value=3e-09 Score=104.22 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=87.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|||||+|+||+.+|++| ...|.+|.+||+++.. +.+ ...+ .....+..+++++||+|++++|
T Consensus 1 m~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCC
Confidence 3699999999999999998 5788999999987632 221 1122 2234678899999999999999
Q ss_pred CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
..++++.++. ...+..+++|.++||+++...-....+.+.+.+..+
T Consensus 65 ~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 65 DTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred ChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 8878887763 236777899999999999999999999998887644
No 46
>PLN02256 arogenate dehydrogenase
Probab=98.98 E-value=1.9e-08 Score=99.16 Aligned_cols=109 Identities=15% Similarity=0.205 Sum_probs=79.9
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~ 241 (398)
-++++|||||+|.||+.+|+.+ +..|.+|++||++...... ...+ +....++++++ ..+|+|+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a----------~~~g-----v~~~~~~~e~~~~~aDvVi 97 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA----------AELG-----VSFFRDPDDFCEEHPDVVL 97 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH----------HHcC-----CeeeCCHHHHhhCCCCEEE
Confidence 4667999999999999999998 6789999999988632111 1112 22235778876 4799999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+|+|. ..+..++.+-....++++++++|++.+.-+..+++.+.+..
T Consensus 98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 99995 46777775433667899999999999765555666666543
No 47
>PLN02858 fructose-bisphosphate aldolase
Probab=98.95 E-value=4.8e-09 Score=121.03 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=96.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
..++||+||+|.||..||++| ...|.+|.+||+++... +.+ ...| ...+.++.|+.+.||+|++|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l--------~~~G-----a~~~~s~~e~a~~advVi~~ 67 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKF--------CELG-----GHRCDSPAEAAKDAAALVVV 67 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEE
Confidence 356799999999999999998 57899999999987643 221 1222 23457899999999999999
Q ss_pred cCCChhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc
Q 015895 244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298 (398)
Q Consensus 244 ~Plt~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV 298 (398)
+|..+.++.++ ....++.+++|.++||+|+..+-....+.+.+++..-....+|.
T Consensus 68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 99998888887 35678889999999999999999999999999875511235553
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.95 E-value=7e-09 Score=107.76 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=98.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aDiV~l 242 (398)
.+|||||+|.||+.+|++| ...|.+|.+||++++... .+.+. ....+ .......+++|+++ ++|+|++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence 4799999999999999998 578999999999886532 11110 00001 11223468889886 5899999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
++|....++.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus 73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 999888899988 467888999999999999999999999999998877655555666554
No 49
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.93 E-value=9.4e-09 Score=100.89 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=84.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l 242 (398)
++|||||+|.||..+|++| ...|.+|.+||+++... +.+ ...+. ....+++++ ++.+|+|++
T Consensus 1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l--------~~~g~-----~~~~s~~~~~~~~~~~dvIi~ 65 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAM--------KEDRT-----TGVANLRELSQRLSAPRVVWV 65 (298)
T ss_pred CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence 4799999999999999998 57899999999987643 221 11221 112355554 456899999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
++|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus 66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 99976 778877 4677889999999999999888999998888876554
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.92 E-value=6.5e-09 Score=119.97 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=90.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
.++|||||+|.||..+|++| ...|++|.+||+++.... . +...+ .....++.+++++||+|++|+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~~~~aDvVi~~V 388 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-R--------FENAG-----GLAGNSPAEVAKDVDVLVIMV 388 (1378)
T ss_pred CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEec
Confidence 47899999999999999998 588999999999875432 1 11122 122468899999999999999
Q ss_pred CCChhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 245 Plt~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|...+++.++ +...++.+++|.++||+++..+-..+.+.+.+.+
T Consensus 389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 9988898887 3567889999999999999999888999998887
No 51
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=5.4e-09 Score=100.69 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=93.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
....++||+||+|.||..+++.| -..|++|++||++.+...+ +..+| .+...++.|+.+.||+|+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~~---------f~~~G-----a~v~~sPaeVae~sDvvi 96 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCKE---------FQEAG-----ARVANSPAEVAEDSDVVI 96 (327)
T ss_pred CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHHH---------HHHhc-----hhhhCCHHHHHhhcCEEE
Confidence 34678999999999999999998 6899999999999876422 12223 334578999999999999
Q ss_pred EccCCChhhhhhcc--HHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCC
Q 015895 242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 242 l~~Plt~~T~~li~--~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~ 290 (398)
.++|...+.+.++. ...++..++|... |+.++.+.--...|.+++....
T Consensus 97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~ 148 (327)
T KOG0409|consen 97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG 148 (327)
T ss_pred EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC
Confidence 99999999988873 4578888888888 9999998888888999988653
No 52
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.86 E-value=4.8e-08 Score=96.07 Aligned_cols=193 Identities=20% Similarity=0.225 Sum_probs=122.6
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
-+.||++.|.|||..|+.+|.++ ++.|++|++++-.|-..++...+ |+ .+..++|....+|+++
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~Md--------------Gf-~V~~m~~Aa~~gDifi 269 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMD--------------GF-RVMTMEEAAKTGDIFV 269 (420)
T ss_pred eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhc--------------Cc-EEEEhHHhhhcCCEEE
Confidence 58999999999999999999997 89999999998887766654332 23 2457899999999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHH-HhcCCccEEEeccCCCCCCCC-C--CCCCCCceE
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH-LKQNPMFRVGLDVFEDEPYMK-P--GLSEMKNAI 316 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~a-L~~g~i~gAalDV~~~EP~~~-~--~L~~~~nvi 316 (398)
.++- ++++|..++|..||+|+++-|.+.-.+ ||...|.+- ++...+... +|-|+- ++ . -|+.--+++
T Consensus 270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~-V~ey~l---~~Gkri~llaeGRLv 341 (420)
T COG0499 270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQ-VDEYEL---PDGKRIILLAEGRLV 341 (420)
T ss_pred EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccC-ceEEEc---CCCCEEEEEecceee
Confidence 8874 589999999999999999999998665 666665432 222223222 222221 11 1 111111111
Q ss_pred EcCCCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcceee
Q 015895 317 VVPHIASASKWTR-EGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLT 393 (398)
Q Consensus 317 lTPHia~~T~ea~-~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (398)
=.----|+..+-. ...+.++..++.-+-+.+.+.+.|.++ | . .+=++..++.....|.-+-.
T Consensus 342 NLa~a~GHPs~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~l-P----~----------~lD~~VArl~L~~~G~~i~~ 404 (420)
T COG0499 342 NLAAATGHPSEVMDMSFANQALAQIYLVKNHGKLEPGVYRL-P----K----------ELDEEVARLKLEAMGIELDE 404 (420)
T ss_pred eeccCCCCcHHHhhhhHHHHHHHHHHHHhcccccCCceeeC-c----H----------HHHHHHHHHHHHHhCceeee
Confidence 0000112222211 122333333333344567777777554 4 2 56678888888888765533
No 53
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.86 E-value=1.3e-08 Score=99.24 Aligned_cols=111 Identities=21% Similarity=0.222 Sum_probs=86.0
Q ss_pred EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249 (398)
Q Consensus 170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~ 249 (398)
|||+|.||+.+|++| ...|.+|.+||++.... +. +...+ .....++.+++++||+|++|+|....
T Consensus 1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~--------l~~~g-----~~~~~s~~~~~~~advVil~vp~~~~ 65 (288)
T TIGR01692 1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EE--------AVAAG-----AQAAASPAEAAEGADRVITMLPAGQH 65 (288)
T ss_pred CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HH--------HHHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence 689999999999998 57899999999987542 21 11122 22345789999999999999998777
Q ss_pred hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895 250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (398)
Q Consensus 250 T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD 297 (398)
++.++. .+.+..+++|.++||++...+-....+.+.+++..+. .+|
T Consensus 66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288)
T TIGR01692 66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288)
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 777773 4567789999999999988887778888888765443 455
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.85 E-value=2.4e-08 Score=103.82 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=93.0
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEEc
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH 243 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell---~~aDiV~l~ 243 (398)
.|||||+|.||+.+|++| ...|.+|.+||++++.. +.+.+ .+....+.....+++++. +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~--------~~~~g~~~~~~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLA--------EHAKGKKIVGAYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHh--------hccCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence 389999999999999998 57899999999988653 22111 100000112235677765 469999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
+|..+.+..++ .+.+..+++|.++||++.+..-|.....+.+.+..+.....=|...++
T Consensus 71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 99878888888 467788999999999999999999999999987766544444555443
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.85 E-value=4.3e-08 Score=101.28 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=92.7
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+||| +|.||+.+|+.+ +..|.+|.+||+++.... ... ...+ .....+..+.+++||+|++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a-------~~~g-----v~~~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVA-------KELG-----VEYANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHH-------HHcC-----CeeccCHHHHhccCCEEEEec
Confidence 4799997 999999999998 688999999998764421 111 1112 122346788899999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--CCCCCCCCCceEEcCCC
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI 321 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~~~~L~~~~nvilTPHi 321 (398)
|. ..+..++ ++....+++++++++++.......+++.+.+..+. .+...-|. +..+++....+++||+-
T Consensus 67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 96 4556665 55667789999999999866555566666554321 12222333 23357777889999974
No 56
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.84 E-value=1.2e-07 Score=92.77 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|.+.+....++ ..+++|+.+.+. + ..|++++..+ ..+++. +++...-. |=|- |+....+..
T Consensus 58 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~ 130 (301)
T PRK14194 58 AEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVGG 130 (301)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhhH
Confidence 344687776655443 357888877663 1 4689999865 345543 44444322 3221 222121111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
.. .+-+ +....++.-++.++ + +.+.++.||+|+|||.| .||+.+|.+
T Consensus 131 l~------~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~~ 178 (301)
T PRK14194 131 LS------QGRD-VLTPCTPSGCLRLL----E---------------------DTCGDLTGKHAVVIGRSNIVGKPMAAL 178 (301)
T ss_pred Hh------cCCC-CCCCCcHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCccHHHHHHH
Confidence 11 1112 24455565555544 1 12468999999999996 999999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..-|++|.+|+++. .++.++.++||+|+++++.. +++.... +|
T Consensus 179 L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---ik 222 (301)
T PRK14194 179 L-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---LK 222 (301)
T ss_pred H-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---cc
Confidence 8 57899999997642 26788899999999999863 4455443 89
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++-..
T Consensus 223 ~GaiVIDvgin~ 234 (301)
T PRK14194 223 PGAVVIDVGINR 234 (301)
T ss_pred CCcEEEEecccc
Confidence 999999998644
No 57
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.82 E-value=1.9e-08 Score=99.52 Aligned_cols=98 Identities=26% Similarity=0.288 Sum_probs=70.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
|+||+|||||+|+||+++|+.| +.+|++|+++++..+...+. ....+ +. ..+..+++++||+|++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~--------a~~~G-----v~-~~s~~ea~~~ADiVvL 65 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKK--------ATEDG-----FK-VGTVEEAIPQADLIMN 65 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHH--------HHHCC-----CE-ECCHHHHHhcCCEEEE
Confidence 5789999999999999999998 68999988766544322221 11112 22 2468889999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v 277 (398)
++|... ....+.++....++++. +|.++.|=-+
T Consensus 66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence 999532 34455566778899886 8888888544
No 58
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.81 E-value=7.4e-08 Score=95.52 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=84.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~sl~ell~~aDi 239 (398)
++|||||.|.||..+|..++ ..|++|+.||+++.... ..........+...+.. ........++++.++.||+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl 86 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF 86 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence 68999999999999999984 78999999999875421 11111111111111110 1112334689999999999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|+-++|-+.+.+.-+-++.-+.++++++| .+++.+ +...++.+.++.
T Consensus 87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 87 IQESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence 99999999999988888899999999844 444443 456778777764
No 59
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.81 E-value=1.2e-07 Score=92.67 Aligned_cols=118 Identities=25% Similarity=0.251 Sum_probs=78.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCC-------Ccc-ccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ-------PVT-WKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~-~~~~~sl~ell~ 235 (398)
++|||||+|.||..+|+.+ ...|++|++||++...... ......-..+.+.+.. ..+ .....+. +.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 5799999999999999998 4789999999998765211 0000000001111100 000 1112334 5679
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhc
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~ 288 (398)
.||+|+.|+|..++.+..+-++....++++++|+ |+|.-. ...+.+.++.
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence 9999999999999988888787778899999987 777654 3445555543
No 60
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.80 E-value=9.9e-08 Score=92.76 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=66.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|||||+|.||+++|+.| ...|.+|.+||++....... ...+... ....+. +.+++||+|++|+|
T Consensus 1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence 4799999999999999998 57799999999986542111 1112111 111233 46789999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
. .....++ ++....++++++++|++.-.
T Consensus 67 ~-~~~~~~~-~~l~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 67 I-GLLLPPS-EQLIPALPPEAIVTDVGSVK 94 (279)
T ss_pred H-HHHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence 5 3344443 56667789999999998754
No 61
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.76 E-value=1.5e-07 Score=92.72 Aligned_cols=142 Identities=22% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
..++|+|||+|.||+.+|+.+ +..| .+|++||++.... +. ....+. ......++++.+++||+|+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~--------a~~~g~---~~~~~~~~~~~~~~aDvVi 71 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR--------ARELGL---GDRVTTSAAEAVKGADLVI 71 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH--------HHhCCC---CceecCCHHHHhcCCCEEE
Confidence 346899999999999999997 4556 4899999987542 11 111121 1112346778889999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec---cCCCC---CCC-CCCCCCCCc
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFEDE---PYM-KPGLSEMKN 314 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD---V~~~E---P~~-~~~L~~~~n 314 (398)
+++|. ..+..++ ++....++++.++++++....--.+++.+.+..+ +. .++ ++..| |.. ..+|+.-.+
T Consensus 72 iavp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~ 146 (307)
T PRK07502 72 LCVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VH--FIPGHPLAGTEHSGPDAGFAELFENRW 146 (307)
T ss_pred ECCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-Ce--EEeCCCCCCCcccchhhcCHHHHCCCe
Confidence 99996 3334443 4555678999999999775432223333333221 11 222 22222 111 125666678
Q ss_pred eEEcCCCCC
Q 015895 315 AIVVPHIAS 323 (398)
Q Consensus 315 vilTPHia~ 323 (398)
+++||+-++
T Consensus 147 ~~l~~~~~~ 155 (307)
T PRK07502 147 CILTPPEGT 155 (307)
T ss_pred EEEeCCCCC
Confidence 999997543
No 62
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=3.9e-07 Score=88.60 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=110.5
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++++....++ ..+++|+.+.+. ++.|++++..+ ..+++. +++..+-. |=|- |+....
T Consensus 56 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n-- 126 (285)
T PRK14189 56 ACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KDVD----GFHVAN-- 126 (285)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhh--
Confidence 3455688877665443 357888776664 14689999865 345543 44444332 3221 111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA~ 182 (398)
.|-...+.+ .....++.-++.++ + +.+.++.||++.|||.|.+ |+.+|.
T Consensus 127 ----~g~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla~ 176 (285)
T PRK14189 127 ----AGALMTGQP-LFRPCTPYGVMKML----E---------------------SIGIPLRGAHAVVIGRSNIVGKPMAM 176 (285)
T ss_pred ----hhHhhCCCC-CCcCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHHH
Confidence 111111222 23455555555443 1 1235899999999999999 999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ...|++|..+.... .++.+.+++||+|++++| +.++|+. +.+
T Consensus 177 lL-~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIVV~avG----~~~~i~~---~~i 220 (285)
T PRK14189 177 LL-LQAGATVTICHSKT----------------------------RDLAAHTRQADIVVAAVG----KRNVLTA---DMV 220 (285)
T ss_pred HH-HHCCCEEEEecCCC----------------------------CCHHHHhhhCCEEEEcCC----CcCccCH---HHc
Confidence 98 68999998865321 368889999999999998 3667877 678
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++...
T Consensus 221 k~gavVIDVGin~ 233 (285)
T PRK14189 221 KPGATVIDVGMNR 233 (285)
T ss_pred CCCCEEEEccccc
Confidence 9999999998754
No 63
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.74 E-value=3.8e-08 Score=97.00 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=67.2
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+++|||||+|.||+.+|++| ...|++|.+|+++.. .++++++++||+|+++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~ 54 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA 54 (308)
T ss_pred CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence 457899999999999999998 588999999998542 3677888999999999
Q ss_pred cCCChhhhhhccHHHHh-cCCCCcEEEEcCCCc
Q 015895 244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~ 275 (398)
+|. ...+.++.. ... .+++++++|++++|-
T Consensus 55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL 85 (308)
T ss_pred CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence 997 577777733 222 478999999998854
No 64
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.72 E-value=2.1e-07 Score=93.84 Aligned_cols=138 Identities=19% Similarity=0.128 Sum_probs=86.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|+|||+|.||+++|+.+ +..|.+|.+|++++....... ..+ .........++++++++||+|++|+|
T Consensus 1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~---------a~~-~~~~~~~~~~~~~~~~~aDlVilavP 69 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR---------ALG-FGVIDELAADLQRAAAEADLIVLAVP 69 (359)
T ss_pred CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH---------Hhc-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence 4799999999999999998 678888877877654421110 001 01111123467888999999999999
Q ss_pred CChhhhhhccHHHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC----------CCCCCCCc
Q 015895 246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN 314 (398)
Q Consensus 246 lt~~T~~li~~~~~~-~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~----------~~L~~~~n 314 (398)
. ..+..++. +... .+++++++++++.-+.-..+++.+.+..+ . -.++. -|... ..|+....
T Consensus 70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~--~~ig~---HPMaG~e~sG~~aa~~~lf~g~~ 141 (359)
T PRK06545 70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I--RFVGG---HPMAGSHKSGVAAARADLFENAP 141 (359)
T ss_pred H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C--eEEee---CCcCcCchhhHHHhcHHHHCCCc
Confidence 6 45666663 3333 48899999999886643334443332221 1 12222 23221 24677677
Q ss_pred eEEcCCCC
Q 015895 315 AIVVPHIA 322 (398)
Q Consensus 315 vilTPHia 322 (398)
.++||+-.
T Consensus 142 ~il~~~~~ 149 (359)
T PRK06545 142 WVLTPDDH 149 (359)
T ss_pred EEEecCCC
Confidence 89999743
No 65
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.72 E-value=1.6e-07 Score=96.76 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=91.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-----------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~sl~ell 234 (398)
++|||||+|.||..+|..++ . |.+|++||+++... +.+. .|..+ .+.....+..+.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~ 74 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELK---------NGVDVNLETTEEELREARYLKFTSEIEKI 74 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence 78999999999999999974 3 69999999987652 2221 11110 0011122334568
Q ss_pred hcCCEEEEccCCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH-hc--CCccEEEe-ccCCCC
Q 015895 235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGL-DVFEDE 302 (398)
Q Consensus 235 ~~aDiV~l~~Plt------~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~i~gAal-DV~~~E 302 (398)
++||++++|+|.. ++...++ .+...+.+++|.++|+.|+-.+-..+.+++.+ ++ |...+-.. =+|.+|
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 9999999999965 3345555 34567889999999999998888887754443 33 32111111 146778
Q ss_pred CCCC----CCCCCCCceEE
Q 015895 303 PYMK----PGLSEMKNAIV 317 (398)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (398)
|... ..+...|+++.
T Consensus 155 ~v~~G~a~~~~~~~~riv~ 173 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITS 173 (425)
T ss_pred cCCCCcccccccCCCeEEE
Confidence 8743 24667777754
No 66
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.72 E-value=5.8e-07 Score=88.01 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=107.2
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++ ++++..+-. |=|- |+..+.+-
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g 128 (296)
T PRK14188 56 QTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNAG 128 (296)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhHH
Confidence 3445688776654443 3578888776641 3689999865 34554 344444322 3221 11111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~ 182 (398)
.. ..+.+ +....++.-++.++ + +.+.++.||+|+||| .|.||+.+|+
T Consensus 129 ~l------~~~~~-~~~PcTp~ai~~ll----~---------------------~~~i~~~Gk~V~viGrs~~mG~PmA~ 176 (296)
T PRK14188 129 RL------ATGET-ALVPCTPLGCMMLL----R---------------------RVHGDLSGLNAVVIGRSNLVGKPMAQ 176 (296)
T ss_pred HH------hCCCC-CCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEEcCCcchHHHHHH
Confidence 11 11222 24555666555544 1 123479999999999 9999999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
+| ..-|+.|.+|+.+. .++++++++||+|+++++..+ ++.+.. +
T Consensus 177 ~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~---l 220 (296)
T PRK14188 177 LL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW---I 220 (296)
T ss_pred HH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---e
Confidence 98 57799999995321 257788999999999999643 444433 8
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++--.
T Consensus 221 k~GavVIDvGin~ 233 (296)
T PRK14188 221 KPGATVIDVGINR 233 (296)
T ss_pred cCCCEEEEcCCcc
Confidence 9999999998644
No 67
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.70 E-value=3e-08 Score=101.08 Aligned_cols=99 Identities=19% Similarity=0.230 Sum_probs=69.4
Q ss_pred CCCCcc-cc-cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhhhcCCCCccc
Q 015895 153 WLPNLF-VG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTW 224 (398)
Q Consensus 153 w~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (398)
|.+..| .+ ..|+||||+|||+|++|+.-|..| +..|.+|++--|. .+.... .... ++
T Consensus 22 ~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~d-----GF 86 (487)
T PRK05225 22 MDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATEN-----GF 86 (487)
T ss_pred cchhhccchhHHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhc-----CC
Confidence 665555 22 569999999999999999666665 5666666522111 111100 0111 22
Q ss_pred cccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE
Q 015895 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269 (398)
Q Consensus 225 ~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI 269 (398)
...+++|++++||+|++.+|++ . ++.+.++.+..||+|+.|.
T Consensus 87 -~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 87 -KVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred -ccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 2367999999999999999987 3 7778899999999998874
No 68
>PLN02712 arogenate dehydrogenase
Probab=98.70 E-value=8.7e-08 Score=103.64 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=77.3
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV 240 (398)
.-+.++|||||+|.||+.+|+.+ +.+|++|++||++...... ...+ .....++++++ ..||+|
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~G-----v~~~~d~~e~~~~~aDvV 112 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLG-----VSFFLDPHDLCERHPDVI 112 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence 34557899999999999999998 6889999999997433211 1112 22245778865 569999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
++|+|. ..+..++.+-.+..+++|++++|++.-...--+++.+.+.
T Consensus 113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 999995 5778888665456799999999998654322234444443
No 69
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.68 E-value=4e-07 Score=88.84 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=83.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~sl~ell 234 (398)
++|+|||+|.||..+|..+ ...|.+|++||+++.... ...+....... ..+... .......++++.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQLE-SAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 5799999999999999998 467999999999876522 11110000000 000000 0011235788899
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~i~gAalDV~ 299 (398)
++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...+ ..+.+.++. .-...++..|
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 9999999999987776666556667778999877 78888554 446555543 2234566655
No 70
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.67 E-value=5.4e-07 Score=90.94 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=84.1
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+.-.||+|||+ |.||+++|+.+.+.++.+|++||+... ...++++.+++||+|+
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi 56 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI 56 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence 34578999999 999999999984346999999998421 0136778899999999
Q ss_pred EccCCChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC---CCCCCCCCceE
Q 015895 242 LHPVLDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAI 316 (398)
Q Consensus 242 l~~Plt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~---~~~L~~~~nvi 316 (398)
+|+|. ..+..++.+ .....+|+|++++|++.-+- ..++++.... .++-..-|.. .+.+++..+++
T Consensus 57 lavPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~i 126 (370)
T PRK08818 57 FSAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMV 126 (370)
T ss_pred EeCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEE
Confidence 99996 455565532 11224899999999988542 2222222211 1344445542 23577777899
Q ss_pred EcCC
Q 015895 317 VVPH 320 (398)
Q Consensus 317 lTPH 320 (398)
+||.
T Consensus 127 ltp~ 130 (370)
T PRK08818 127 VCEA 130 (370)
T ss_pred EeCC
Confidence 9996
No 71
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.67 E-value=4.5e-07 Score=88.26 Aligned_cols=137 Identities=23% Similarity=0.246 Sum_probs=87.4
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEE--EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhcCCEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS 241 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-l~ell~~aDiV~ 241 (398)
-++|+|+|+|.||+.+|+.+ +.-|..| +++|++....... .......+...+ ..+.+..||+|+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence 36899999999999999997 6777765 5555554332211 011122221123 367778899999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----CCCCCCCCceEE
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----KPGLSEMKNAIV 317 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----~~~L~~~~nvil 317 (398)
+++|- ..|..++ ++....+|+|++++|++.-.----+++.+.+.++ . .+..--|.. ..+++....+|+
T Consensus 70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vl 141 (279)
T COG0287 70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVL 141 (279)
T ss_pred EeccH-HHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEE
Confidence 99996 4566665 4455589999999999885533334443333221 1 333445542 236888888999
Q ss_pred cCCCC
Q 015895 318 VPHIA 322 (398)
Q Consensus 318 TPHia 322 (398)
||.-.
T Consensus 142 tp~~~ 146 (279)
T COG0287 142 TPSEG 146 (279)
T ss_pred cCCCC
Confidence 99643
No 72
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.67 E-value=1.4e-07 Score=76.45 Aligned_cols=92 Identities=26% Similarity=0.377 Sum_probs=62.5
Q ss_pred eEEEEecChhHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
||||||+|+||+.+++.+ ...| .+|. +++|++... +++.+.+ + ... ...+..|+++.||+|++
T Consensus 1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil 67 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL 67 (96)
T ss_dssp EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence 699999999999999998 5788 8999 558887643 2221211 1 111 11268899999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
++|. .....++ ++. ....++.++|++.-|
T Consensus 68 av~p-~~~~~v~-~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 68 AVKP-QQLPEVL-SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp -S-G-GGHHHHH-HHH-HHHHTTSEEEEESTT
T ss_pred EECH-HHHHHHH-HHH-hhccCCCEEEEeCCC
Confidence 9994 2334433 334 667889999998643
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.66 E-value=1.4e-06 Score=85.01 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=92.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC---------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP---------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~sl~ell 234 (398)
++|+|||.|.||..+|..++ ..|.+|+.||++.....+ ...+.......+.+... .......++++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 57999999999999999984 679999999998754211 11000000000000000 0112246788889
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n 314 (398)
+.||+|+.++|...+.+.-+-++....++++++|+..+.+- ....+.+.++... ...++-- .+|.+..+.
T Consensus 83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l 152 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHF-------ANEIWKNNT 152 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence 99999999999765555555566667789999885443332 3355666655322 2233322 234556688
Q ss_pred eEEcCCCCCCcHHHH
Q 015895 315 AIVVPHIASASKWTR 329 (398)
Q Consensus 315 vilTPHia~~T~ea~ 329 (398)
|.++||-. .+.++.
T Consensus 153 vevv~~~~-t~~~~~ 166 (287)
T PRK08293 153 AEIMGHPG-TDPEVF 166 (287)
T ss_pred EEEeCCCC-CCHHHH
Confidence 88888644 334443
No 74
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.66 E-value=9.8e-07 Score=89.44 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 120 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
....++-.+-.++..+|+..+ +. |... .....++|+||| +|.||+.+|+.+ +..|..|.+||+.
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q~------~~----~~~~----~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~ 131 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSEN------DK----GFKT----LNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD 131 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHhH------Hh----cccc----cCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence 445566677777777764432 11 2211 223558999999 999999999998 6789999999974
Q ss_pred hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (398)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd 278 (398)
.. .+.++++++||+|++|+|.. .+..++ ++ +..+++|+++++++.-...-
T Consensus 132 ~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~-~~-l~~l~~~~iv~Dv~SvK~~~ 181 (374)
T PRK11199 132 DW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVI-AR-LPPLPEDCILVDLTSVKNAP 181 (374)
T ss_pred cc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HH-HhCCCCCcEEEECCCccHHH
Confidence 21 24567789999999999964 455655 33 44499999999998854333
Q ss_pred HHHHHHH
Q 015895 279 EVALVEH 285 (398)
Q Consensus 279 e~aL~~a 285 (398)
..++.+.
T Consensus 182 ~~~~~~~ 188 (374)
T PRK11199 182 LQAMLAA 188 (374)
T ss_pred HHHHHHh
Confidence 3344443
No 75
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.66 E-value=6.8e-07 Score=86.88 Aligned_cols=170 Identities=19% Similarity=0.301 Sum_probs=109.0
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCc
Q 015895 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV 102 (398)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~ 102 (398)
+..++.|++++....++ ..+++|+.+.+. + +.|+|++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~ 127 (284)
T PRK14179 55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT 127 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence 33455688887665444 357787776664 1 4689999865 344443 33443322 3221 1111111
Q ss_pred hHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 015895 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA 181 (398)
Q Consensus 103 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA 181 (398)
|-...+.++ ....++.-++.++ + +.+.++.||+++|||. |.+|+.+|
T Consensus 128 ------g~l~~~~~~-~~PcTp~avi~lL----~---------------------~~~i~l~Gk~v~vIG~S~ivG~Pla 175 (284)
T PRK14179 128 ------GHLWSGRPV-MIPCTPAGIMEMF----R---------------------EYNVELEGKHAVVIGRSNIVGKPMA 175 (284)
T ss_pred ------HHHhCCCCC-CcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence 111122232 4566666665544 1 1345899999999999 99999999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 182 ~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
.+| ...|+.|.+|... ..++.+.+++||+|+++++. .+++....
T Consensus 176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~--- 219 (284)
T PRK14179 176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF--- 219 (284)
T ss_pred HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence 998 5789999988321 13688899999999999986 33455443
Q ss_pred CCCCcEEEEcCCCc
Q 015895 262 MKKEAILVNCSRGP 275 (398)
Q Consensus 262 mk~gailIN~aRG~ 275 (398)
+|+|+++||++--.
T Consensus 220 ik~GavVIDvgin~ 233 (284)
T PRK14179 220 VKEGAVVIDVGMNR 233 (284)
T ss_pred ccCCcEEEEeccee
Confidence 89999999998644
No 76
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.62 E-value=6.8e-07 Score=85.92 Aligned_cols=103 Identities=30% Similarity=0.377 Sum_probs=73.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++|||||+|+||+.+|+.| ..-|. +|++| |++.... +.+ ...+ .....+..+++++||+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvV 65 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVI 65 (266)
T ss_pred CeEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEE
Confidence 4799999999999999998 45566 88999 8776442 221 1112 22345778889999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
++++| ......++. +....++++.++|++.-| +..+.+.+.+.
T Consensus 66 il~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 66 ILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred EEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 99997 456777763 455667899999988766 35566665554
No 77
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.61 E-value=6.3e-07 Score=92.05 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=75.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------ 233 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el------------ 233 (398)
++|+|||+|.||..+|..| ...|.+|++||+++.... .+. .+..+. ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l~---------~g~~~~---~e~~l~~~l~~~~~~g~l~~ 69 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TIN---------RGEIHI---VEPDLDMVVKTAVEGGYLRA 69 (415)
T ss_pred cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH---------CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence 6899999999999999998 477999999999876432 211 111110 01223333
Q ss_pred ---hhcCCEEEEccCCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 234 ---l~~aDiV~l~~Plt------~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
++.||+|++|+|.. ++...+. -+.....+++|+++|+.|.-.+--.+.+...+.+
T Consensus 70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 34799999999964 2223332 2456777999999999999777777777766664
No 78
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.58 E-value=5.8e-07 Score=87.31 Aligned_cols=107 Identities=18% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+++|||||+|+||+.+|+.|. ..| .+|++|||+.....+.+...+ + .....+..+++++||+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDv 68 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANI 68 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCE
Confidence 3468999999999999999984 445 689999987644333321111 1 2223577888899999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
|++++|. .+....+ .+....++++.++|++.-|- ..+.+.+.+.
T Consensus 69 Vilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 69 LFLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred EEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 9999994 4455555 44455678899999986553 4556666554
No 79
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.58 E-value=1.9e-07 Score=94.57 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=74.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~ell~~aDiV 240 (398)
.+.++++.|+|.|.+|+.+++.+ +.+|++|.++|++.... +.....+ +.. ........++.+.++++|+|
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~-------g~~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEF-------GGRIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhc-------CceeEeccCCHHHHHHHHccCCEE
Confidence 36788899999999999999997 79999999999986542 2211111 100 00011113467888999999
Q ss_pred EEccCCC-hhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 241 SLHPVLD-KTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 241 ~l~~Plt-~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+.+++.+ ..+..+++++.++.||+++++||++
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 9998653 2356789999999999999999986
No 80
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.55 E-value=2.9e-07 Score=81.93 Aligned_cols=95 Identities=32% Similarity=0.370 Sum_probs=63.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
|+||+|.|||||.-|..-|..| +..|.+|++-.+..++..+. .++.| ++ ..+++|+.++||+|.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f~-v~~~~eAv~~aDvV~~ 66 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----FE-VMSVAEAVKKADVVML 66 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT------E-CCEHHHHHHC-SEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----Ce-eccHHHHHhhCCEEEE
Confidence 6899999999999999999998 78999999887765532111 11222 32 3689999999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
.+|. +.-..+..++....||+|..|+ .+.|
T Consensus 67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence 9994 2234555677888999998765 4455
No 81
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.55 E-value=3.8e-06 Score=81.79 Aligned_cols=168 Identities=16% Similarity=0.264 Sum_probs=108.8
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |=|- |+....+..
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~ 129 (286)
T PRK14175 57 AEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINIGK 129 (286)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccchHh
Confidence 345688876665443 3577777766641 4689999865 335543 44444332 3221 221111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~ 183 (398)
...+.+ .....++.-++.++ . +.+.++.||++.|||.|. +|+.+|..
T Consensus 130 ------l~~~~~-~~~PcTp~ai~~ll----~---------------------~~~i~l~Gk~vvVIGrs~~VG~pla~l 177 (286)
T PRK14175 130 ------LYIDEQ-TFVPCTPLGIMEIL----K---------------------HADIDLEGKNAVVIGRSHIVGQPVSKL 177 (286)
T ss_pred ------HhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCchhHHHHHHH
Confidence 111222 23455555555444 1 123479999999999998 99999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...|++|..++++. .++.+.+++||+|+.+++. .++|.++. +|
T Consensus 178 L-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---vk 221 (286)
T PRK14175 178 L-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---VK 221 (286)
T ss_pred H-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---cC
Confidence 8 68999999887532 2577889999999999985 45677764 68
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++-..
T Consensus 222 ~gavVIDvGi~~ 233 (286)
T PRK14175 222 EGAVIIDVGNTP 233 (286)
T ss_pred CCcEEEEcCCCc
Confidence 999999998754
No 82
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.54 E-value=3.2e-06 Score=82.63 Aligned_cols=128 Identities=22% Similarity=0.280 Sum_probs=80.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~sl~ell 234 (398)
++|+|||.|.||..+|..+ ...|.+|++||++..... ...+.....+ ...+... .......++++ +
T Consensus 5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence 5799999999999999998 467999999999875421 1111000000 0011100 00112345654 7
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~ 300 (398)
++||+|+.++|...+.+..+-++....++++++++ |+|.-.+ .++.+.+... -...++-.+.
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~ 144 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN 144 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence 89999999999877766555567777889999998 6655443 4677776432 2234455454
No 83
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.54 E-value=3.9e-07 Score=88.43 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
.++|||||+|+||+.+++.+.+. .++++. +||+++... +.+.+.+ +. ...+.+++++++++|+|++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi 73 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE 73 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence 47899999999999999998433 578876 778876542 2211111 11 1124689999999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
|+|... ..-+. ...++.|.-++..++|.+.+.++|.++.+++..
T Consensus 74 ~tp~~~--h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 74 AAPASV--LRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred CCCcHH--HHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 999532 22222 333466777777889988889999998887654
No 84
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.52 E-value=4.7e-06 Score=81.00 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=76.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~sl~ell~ 235 (398)
++|+|||.|.||..+|..+ ...|.+|++||+++....... .+..-..+.+.+.... ......+.++ ++
T Consensus 4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 4799999999999999998 467999999999876532100 0000000111111000 1112345554 78
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+||+|+.++|-..+.+.-+-++..+.++++++++..+.| +....|.+.+..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 999999999977776655556666778999999555554 455578887753
No 85
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.52 E-value=6.7e-07 Score=82.95 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=76.6
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCC
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD 238 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aD 238 (398)
+.+++||+++|+|+|+||+.+|++| ..+|++|+++|++.... +.+.+.+ + ... .+.++++. +||
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~-v~~~~l~~~~~D 87 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATV-VAPEEIYSVDAD 87 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEE-EcchhhccccCC
Confidence 3579999999999999999999998 68999999999986532 2211111 1 111 13355554 799
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
+++.|.. .++|+++.+..|+. .+++.-+-+.+-| ..-.+.|++..+
T Consensus 88 v~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi 133 (200)
T cd01075 88 VFAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI 133 (200)
T ss_pred EEEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence 9986665 35788888888874 4777777777665 344555555544
No 86
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.50 E-value=7.6e-07 Score=86.44 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=74.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|||||+|+||+++|+.|. .-| .+|++|||+.... +.+.+. .+ .....+..+++++||+|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~-------~g-----~~~~~~~~e~~~~aDiIi 68 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDK-------YG-----ITITTNNNEVANSADILI 68 (272)
T ss_pred CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHh-------cC-----cEEeCCcHHHHhhCCEEE
Confidence 57999999999999999884 444 3799999987542 221111 12 222356778899999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
+++|. .....++ ++.-..++++.++|++.-| ++.+.|.+.+.
T Consensus 69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 99993 5666666 3444556889999999988 45667777664
No 87
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.49 E-value=1.6e-05 Score=83.23 Aligned_cols=227 Identities=20% Similarity=0.167 Sum_probs=122.9
Q ss_pred HHHHHHhCCCeEEEecCC--CCCCCHHHHHHHh--------cCCCcEEE-ecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895 29 WINLLIEQDCRVEICTQK--KTILSVEDIIALI--------GDKCDGVI-GQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (398)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~--~~~~~~eel~~~~--------~~~~d~vi-~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~ 97 (398)
..+.|.+.|+++.+-... ....+.++..+.= -+++|.|+ +..+ +++.++.++. |--+++...-..
T Consensus 21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P---~~~e~~~l~~-g~tli~~l~p~~ 96 (511)
T TIGR00561 21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAP---SDAEIAELPA-GKALVSFIWPAQ 96 (511)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCC---CHHHHHhcCC-CCEEEEEcCccC
Confidence 467777778877664431 2234455544310 01356555 3322 3445666655 224445444444
Q ss_pred cccCchHhhhcCceEEecCCCC--C--------chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895 98 NNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167 (398)
Q Consensus 98 d~iD~~~~~~~gI~V~n~p~~~--~--------~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt 167 (398)
|.=-++++.+++|.+..--..- + .++|+.+ -.|-+..+.+.+ |++..-+ ....| .+.+.+
T Consensus 97 n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~l--gr~~~g~-~taag-~vp~ak 166 (511)
T TIGR00561 97 NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEF--GRFFTGQ-ITAAG-KVPPAK 166 (511)
T ss_pred CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHh--hhhcCCc-eecCC-CCCCCE
Confidence 4334667788888887732111 1 1233322 222222221111 1100000 00112 355789
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----hhcCCCCccccccCC----------HHH
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS----------MDE 232 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s----------l~e 232 (398)
+.|+|.|.+|...++.+ +.+|++|.++|++.... +. .+.++... ...+....++....+ +.+
T Consensus 167 VlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~-a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 167 VLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQ-VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 99999999999999986 89999999999987642 21 12122111 001111112221112 445
Q ss_pred HhhcCCEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 233 VLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 233 ll~~aDiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.++++|+|+.++ |.. ....++.++.++.||+|+++||+|-
T Consensus 244 ~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 244 QAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence 678899998776 432 2346889999999999999999865
No 88
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.48 E-value=2.8e-06 Score=83.03 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=83.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~ 235 (398)
++|||||.|.||..+|..++ ..|.+|+.||+++..... ......-..+.+.+... .......++ +.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence 37999999999999999985 679999999999875321 11111101111122110 011123567 4579
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~ 300 (398)
.||+|+-++|-+.+.+.-+-.+.-+.+ ++++++++.+.+-.+ .++..+++.. =...++.-|.
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~-~r~~g~hf~~ 146 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRP-GRVLGLHFFN 146 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCC-ccEEEEecCC
Confidence 999999999999998887766555555 899999998877554 4444444432 1235566665
No 89
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.47 E-value=3.6e-06 Score=86.27 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=75.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCcc-ccccCCHHHHhhc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVT-WKRASSMDEVLRE 236 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~sl~ell~~ 236 (398)
++|||||+|.||..+|..| ...|.+|++||++.... +.+.... ...+.+. . ..+ .....++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~-~-~~g~l~~~~~~~~~~~~ 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKA-L-AAGRLRATTDYEDAIRD 76 (411)
T ss_pred CEEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHh-h-hcCCeEEECCHHHHHhh
Confidence 4799999999999999998 47899999999987542 1111100 0000000 0 001 2223578888999
Q ss_pred CCEEEEccCCChh------hhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 237 ADVISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 237 aDiV~l~~Plt~~------T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
||+|++|+|.... ...+. -++....+++|.++|++|.-.+-..+.+...+
T Consensus 77 advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 77 ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 9999999996432 12222 14456678999999999976665666665433
No 90
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.46 E-value=5.8e-07 Score=86.72 Aligned_cols=95 Identities=22% Similarity=0.419 Sum_probs=78.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
-+.||.+.|.|||.+|+..|..| ++||++|++....|-..+....+ ++ .+..++|+.++.|+++
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMe--------------G~-~V~tm~ea~~e~difV 274 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAME--------------GY-EVTTLEEAIREVDIFV 274 (434)
T ss_pred eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhh--------------cc-EeeeHHHhhhcCCEEE
Confidence 47999999999999999999998 89999999998777554443222 22 2468999999999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~ 276 (398)
.+. ..+.+|..++|.+||+++++-|++.-.+
T Consensus 275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence 766 4688999999999999999999988553
No 91
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.45 E-value=2.4e-06 Score=82.85 Aligned_cols=101 Identities=17% Similarity=0.289 Sum_probs=66.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|||||+|.||+.+|+.| ...| .+|++||+++...... ...+.. ....+.+++. +||+|++|
T Consensus 1 m~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vila 65 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLA 65 (275)
T ss_pred CEEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence 3799999999999999998 4445 5899999987542111 111211 1123567765 59999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+|. ..+..++ .+... +++++++++++.- ...+.+.+..
T Consensus 66 vp~-~~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 66 IPV-DAIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred CcH-HHHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 995 3445554 34555 8999999998653 3345555543
No 92
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.44 E-value=1.8e-06 Score=75.74 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=76.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... +.+.+.+ +.... .....+.+++++++|+|
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~-------~~~~~-~~~~~~~~~~~~~~Dvv 85 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERF-------GELGI-AIAYLDLEELLAEADLI 85 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHH-------hhccc-ceeecchhhccccCCEE
Confidence 46788999999999999999998 4664 7899999986542 2211111 10000 01234677778999999
Q ss_pred EEccCCChh-hh-hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 241 ~l~~Plt~~-T~-~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
++++|.... .. ..+... .++++.+++|++..+.. + .|.+.+++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g 132 (155)
T cd01065 86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG 132 (155)
T ss_pred EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence 999997653 12 223332 36899999999886543 3 7777777654
No 93
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.42 E-value=2e-06 Score=85.42 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCC-CCccccccCCHHHHhhcCCEEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~sl~ell~~aDiV~l 242 (398)
.++|+|||+|.||..+|.+| ...|.+|.+|+|++... +..... ...... .+. .+.......+++++++.||+|++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 35899999999999999998 46799999999976532 211110 000000 010 00002234578888899999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHHHHhc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ 288 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG-~~vd--e~aL~~aL~~ 288 (398)
++|.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+..
T Consensus 81 ~v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 81 AVPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred ECchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 99964 22 5566889999999999997 3322 4456666644
No 94
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.42 E-value=4.4e-06 Score=87.93 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=86.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~ 235 (398)
++|||||+|.||+.||..++ ..|.+|+.||+++....+. .....-..+.+.|... .......++++ ++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~ 85 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA 85 (507)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence 57999999999999999984 6799999999998653211 1110000111112100 01122356766 56
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E 302 (398)
+||+|+-++|-+.+.+..+-.+.-..++++++| +|+|.-++ .++.++++.- =...++..|.+-
T Consensus 86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa 149 (507)
T PRK08268 86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPV 149 (507)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCc
Confidence 999999999999998887766666667899999 59988665 3576666542 133566666533
No 95
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.39 E-value=1.2e-06 Score=79.00 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=68.3
Q ss_pred cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~I-G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.++.||++.|||.|.+ |+.+|+.| ...|++|.+.+++. .++.+.+.+||+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi 90 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI 90 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence 3699999999999996 88899998 68899999888753 246678999999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd 278 (398)
|+.+++.. ++|.++. ++++.++||+|...-+|
T Consensus 91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence 99999852 3688775 57899999999988777
No 96
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.39 E-value=1.9e-05 Score=77.86 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=82.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~ 235 (398)
++|+|||+|.||..+|..+ ...|.+|++||+++...... ..+..-..+...+... .......++.++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4799999999999999998 46799999999987532110 0000000011111100 00123457888899
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCce
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA 315 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nv 315 (398)
.||+|+.++|...+.+..+-++.-+..++..++. .+... .....+.+.+.... ....|-+-+ |. .-.+=+
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~--~~~~~hp~~-p~-----~~~~lv 151 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRE--RCLVAHPIN-PP-----YLIPVV 151 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCcc--cEEEEecCC-Cc-----ccCceE
Confidence 9999999999765554444333333345555554 33333 34566777775422 244444432 21 111335
Q ss_pred EEcCCCC
Q 015895 316 IVVPHIA 322 (398)
Q Consensus 316 ilTPHia 322 (398)
.++||-+
T Consensus 152 eiv~~~~ 158 (308)
T PRK06129 152 EVVPAPW 158 (308)
T ss_pred EEeCCCC
Confidence 6777644
No 97
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.39 E-value=6.7e-06 Score=86.37 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=81.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhh---hcCCCCcc-ccccCCHHHHhhcCCE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLK---ANGEQPVT-WKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~---~~~~~~~~-~~~~~sl~ell~~aDi 239 (398)
++|||||+|.||+.+|.+++ ..|.+|++||+++..... ...+....... .......+ .....++++++++||+
T Consensus 5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 58999999999999999984 679999999998765311 10000000000 00000001 2234678899999999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~ 301 (398)
|+.++|-..+.+..+-++.-+.++++++| .++..++ ....+.+.+... ....+|-+.+
T Consensus 84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~--~r~~~~hP~n 141 (495)
T PRK07531 84 IQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHP--ERLFVAHPYN 141 (495)
T ss_pred EEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCc--ceEEEEecCC
Confidence 99999987766665545555667888755 4444443 355777776542 2345554443
No 98
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.36 E-value=2.3e-06 Score=84.35 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=69.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|+|||+|.||..+|.+| ...|.+|.+||+++... +...+. +........ .+.+.....+++++++.||+|+++
T Consensus 2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence 4799999999999999998 46789999999976432 111110 000000000 000122345788889999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
+|. ..+..++ .+....++++.++|+++.|-
T Consensus 79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence 996 4666666 34556678999999998654
No 99
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.35 E-value=4.2e-06 Score=85.22 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=86.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhhhcC-CCCccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANG-EQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~sl~ell~~aDiV 240 (398)
++|+|||+|.||..+|..++ .|++|++||++.... +...+. +...+++.. ..........+..++++.||+|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v 77 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV 77 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence 47999999999999997663 489999999987652 221110 000000000 0011121223467778999999
Q ss_pred EEccCCChh----------hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC----
Q 015895 241 SLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---- 306 (398)
Q Consensus 241 ~l~~Plt~~----------T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~---- 306 (398)
++|+|...+ .+..+ ++. ..+++|.++|+.|+-.+--.+.+.+.+.+..+ +|.+|.+..
T Consensus 78 ii~Vpt~~~~k~~~~dl~~v~~v~-~~i-~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~ 149 (388)
T PRK15057 78 IIATPTDYDPKTNYFNTSSVESVI-KDV-VEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKAL 149 (388)
T ss_pred EEeCCCCCccCCCCcChHHHHHHH-HHH-HhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccc
Confidence 999996521 12222 233 34799999999999888888888887765322 246665432
Q ss_pred CCCCCCCceEE
Q 015895 307 PGLSEMKNAIV 317 (398)
Q Consensus 307 ~~L~~~~nvil 317 (398)
..++..|+|++
T Consensus 150 ~d~~~p~rvv~ 160 (388)
T PRK15057 150 YDNLHPSRIVI 160 (388)
T ss_pred ccccCCCEEEE
Confidence 23555556544
No 100
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.35 E-value=1.6e-05 Score=77.34 Aligned_cols=168 Identities=18% Similarity=0.260 Sum_probs=109.4
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-- 126 (285)
T PRK14191 56 CERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KDVD----GFHPLNI-- 126 (285)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH--
Confidence 445688877665544 3577777766542 3689999865 345543 34444322 3221 1111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
|-...+.+ .....++.-++.++ + +.+.++.||++.|||-| .+|+.+|..
T Consensus 127 ----g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrs~~VG~Pla~l 176 (285)
T PRK14191 127 ----GKLCSQLD-GFVPATPMGVMRLL----K---------------------HYHIEIKGKDVVIIGASNIVGKPLAML 176 (285)
T ss_pred ----HHHhcCCC-CCCCCcHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCchhHHHHHHH
Confidence 11122222 24566676666654 1 12358999999999999 999999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...|+.|..++.+. .++.+.+++||+|+++++. .+++..+.+ |
T Consensus 177 L-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v---k 220 (285)
T PRK14191 177 M-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV---K 220 (285)
T ss_pred H-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc---C
Confidence 8 67899998875322 2467889999999999964 567777766 9
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++-..
T Consensus 221 ~GavVIDvGi~~ 232 (285)
T PRK14191 221 KGAVVVDIGINR 232 (285)
T ss_pred CCcEEEEeeccc
Confidence 999999998644
No 101
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.35 E-value=8.7e-06 Score=85.60 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=86.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell 234 (398)
++|||||.|.||+.||..++ ..|++|+.||+++...... ..+.+.. +...|... .......++++ +
T Consensus 6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-l 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-L 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence 57999999999999999984 6799999999987653210 0011110 11112110 01122456766 4
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
++||+|+-++|-..+.+..+-.+.-..++++++|. |+|.-++ ..+.++++. .-...++.-|.+-|
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence 69999999999888888777666667788888876 7766443 467777753 33567777666443
No 102
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.34 E-value=5.7e-06 Score=90.83 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=89.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|||||+|.||+.+|+.+ +..| .+|++||++....... ...+.. .....++++++++||+|++|
T Consensus 4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a---------~~~g~~---~~~~~~~~~~~~~aDvVila 70 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA---------VSLGVI---DRGEEDLAEAVSGADVIVLA 70 (735)
T ss_pred cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH---------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence 6899999999999999997 5666 5899999987542111 111211 01234678889999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----------CCCCCCCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK 313 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----------~~~L~~~~ 313 (398)
+|.. ....++ ++....++++.++++++.....-.+++.+.+... ...+..+-|.. ++.|+.-.
T Consensus 71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~ 143 (735)
T PRK14806 71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH 143 (735)
T ss_pred CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence 9953 445544 3344567889999999885533344555554431 12223333321 23577878
Q ss_pred ceEEcCCCCC
Q 015895 314 NAIVVPHIAS 323 (398)
Q Consensus 314 nvilTPHia~ 323 (398)
++++||+-..
T Consensus 144 ~~~~~~~~~~ 153 (735)
T PRK14806 144 KVILTPLAET 153 (735)
T ss_pred eEEEECCCCC
Confidence 8999997543
No 103
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.34 E-value=1.4e-05 Score=78.74 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=71.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh---hhhhhhcCCC---CccccccCCHHHHhhcCCE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY---GQFLKANGEQ---PVTWKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~sl~ell~~aDi 239 (398)
++|+|||+|.||..+|..+ ...|.+|++||++.... +...+.. .......+.. ........++++.+++||+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl 82 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL 82 (311)
T ss_pred cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence 5799999999999999998 46799999999977542 1111100 0000000000 0001123567888899999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|++++|...+...-+-++.-..++++++++..+.|- ....+.+.+..
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~ 129 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVTR 129 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcCC
Confidence 999999765433333333334567777765444442 34577777653
No 104
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=3.7e-05 Score=74.80 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=105.9
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++.+....++ ..+++|+.+.+.. +.|+|++..+ ..+++ ++++..+-. |=|- |+....+.
T Consensus 57 ~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g 129 (285)
T PRK10792 57 ACEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KDVD----GFHPYNVG 129 (285)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccC----ccChhhHh
Confidence 3445688776655443 3577887766542 4689999765 34443 344444322 3221 11111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~ 182 (398)
.. ..+.+ .....++.-++.++ + +.+.++.||++.|||.|. +|+.+|.
T Consensus 130 ~l------~~~~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVG~Pla~ 177 (285)
T PRK10792 130 RL------AQRIP-LLRPCTPRGIMTLL----E---------------------RYGIDTYGLNAVVVGASNIVGRPMSL 177 (285)
T ss_pred HH------hCCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHHH
Confidence 11 11112 23445555554443 1 123579999999999999 9999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ...|+.|..++.+. .++.+.+++||+|+.+++- .+++.. +.+
T Consensus 178 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvi~avG~----p~~v~~---~~v 221 (285)
T PRK10792 178 EL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADLLVVAVGK----PGFIPG---EWI 221 (285)
T ss_pred HH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCEEEEcCCC----cccccH---HHc
Confidence 98 68899999886432 3688889999999999964 335655 556
Q ss_pred CCCcEEEEcCCC
Q 015895 263 KKEAILVNCSRG 274 (398)
Q Consensus 263 k~gailIN~aRG 274 (398)
|+|+++||++--
T Consensus 222 k~gavVIDvGin 233 (285)
T PRK10792 222 KPGAIVIDVGIN 233 (285)
T ss_pred CCCcEEEEcccc
Confidence 899999999853
No 105
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=3e-05 Score=75.51 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=107.6
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|+|++..+ ..+++ +++++.+-. |=|- |+-.+.
T Consensus 63 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N--- 132 (287)
T PRK14176 63 CERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KDAD----GFHPYN--- 132 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----ccChhh---
Confidence 445688877665544 3577877766541 4689999865 34443 344444322 3221 111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~ 183 (398)
.|-...+.+ .....+++-++.++ + +.+.++.||++.|||.|. +|+.+|..
T Consensus 133 ---~g~l~~g~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla~l 183 (287)
T PRK14176 133 ---MGKLMIGDE-GLVPCTPHGVIRAL----E---------------------EYGVDIEGKNAVIVGHSNVVGKPMAAM 183 (287)
T ss_pred ---hhhHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHHHH
Confidence 111122222 24555666655544 1 123579999999999999 99999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...|+.|..++... .++.+..++||+|++++.- .++|..+ .+|
T Consensus 184 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~AvG~----p~~i~~~---~vk 227 (287)
T PRK14176 184 L-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVATGV----KHLIKAD---MVK 227 (287)
T ss_pred H-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEccCC----ccccCHH---HcC
Confidence 8 68899998876421 3678889999999998864 3567655 678
Q ss_pred CCcEEEEcCCC
Q 015895 264 KEAILVNCSRG 274 (398)
Q Consensus 264 ~gailIN~aRG 274 (398)
+|+++||++--
T Consensus 228 ~gavVIDvGin 238 (287)
T PRK14176 228 EGAVIFDVGIT 238 (287)
T ss_pred CCcEEEEeccc
Confidence 99999999863
No 106
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=2.4e-05 Score=75.95 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=110.2
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|.+.+....++ ..+++|+.+.+.. ..|++++..+ ..+++ .+++..+-. |=|- |+..+.+..
T Consensus 51 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~g~ 123 (279)
T PRK14178 51 CERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNLGR 123 (279)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence 445688876665444 3578888776641 4689999865 34554 344444332 3221 222122111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
...+.+ .....++.-++.++ + +.+.+++|+++.|+|.+ .+|+.+|..
T Consensus 124 ------l~~~~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~V~ViGrs~~vGrpla~l 171 (279)
T PRK14178 124 ------LVSGLP-GFAPCTPNGIMTLL----H---------------------EYKISIAGKRAVVVGRSIDVGRPMAAL 171 (279)
T ss_pred ------HhCCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCccccHHHHHH
Confidence 112222 24555666555544 1 12358999999999999 999999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..+|+.|..+..+. .++.+.+++||+|+.+++. .+++.++.+ |
T Consensus 172 L-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v---k 215 (279)
T PRK14178 172 L-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV---K 215 (279)
T ss_pred H-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc---C
Confidence 7 68999998876432 2578889999999999974 267888775 9
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++-..
T Consensus 216 ~GavVIDVgi~~ 227 (279)
T PRK14178 216 PGATVIDVGINQ 227 (279)
T ss_pred CCcEEEEeeccc
Confidence 999999998643
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.30 E-value=1.7e-06 Score=75.18 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=72.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
+++|+++.|||.|.+|+.+++.| ...|++ |.+++|+... .+.+.+.+ +..........++.+.+.++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence 69999999999999999999998 678986 9999998754 22322221 11112223345677889999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCc-EEEEcCCCchh
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVI 277 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~ga-ilIN~aRG~~v 277 (398)
+.++|... ..+.++.+...++.. +++|.|...-|
T Consensus 80 I~aT~~~~---~~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 80 INATPSGM---PIITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp EE-SSTTS---TSSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred EEecCCCC---cccCHHHHHHHHhhhhceeccccCCCC
Confidence 99999642 377888888776644 88888765433
No 108
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.30 E-value=4.1e-06 Score=82.21 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
|+.+|++| ...|..|++||++++...+...+ .+...| .....+..+++++||+|++|+|..+.++.++ .
T Consensus 32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~ 100 (341)
T TIGR01724 32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R 100 (341)
T ss_pred HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence 89999998 57899999999876532111000 122223 2335678999999999999999888888887 5
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
..++.+++|+++||+++.++ +.++..|+.
T Consensus 101 GLaa~L~~GaIVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 101 TIIEHVPENAVICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred HHHhcCCCCCEEEECCCCCH---HHHHHHHHH
Confidence 68999999999999988654 444444443
No 109
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.30 E-value=9.2e-06 Score=79.37 Aligned_cols=130 Identities=18% Similarity=0.287 Sum_probs=80.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh--hh-hhhhhcCCCC--------ccccccCCHHH
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA--YG-QFLKANGEQP--------VTWKRASSMDE 232 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~--~~-~~~~~~~~~~--------~~~~~~~sl~e 232 (398)
++|+|||.|.||+.+|..+ ...|++|+.||+++..... ..... ++ ......+... .......++ +
T Consensus 4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 5899999999999999998 4779999999998764211 00000 00 0000011100 001112345 5
Q ss_pred HhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (398)
Q Consensus 233 ll~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~ 300 (398)
.+++||+|+.++|...+.+.-+-++.-..++++++|++.+.|- ....+.+.+... -...++.-|.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~-~r~ig~hf~~ 146 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERK-DRFIGMHWFN 146 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCc-ccEEEEecCC
Confidence 6789999999999766555555455556789999999887774 456677777532 2334444443
No 110
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.27 E-value=9.1e-06 Score=79.01 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=72.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|+|||+|+||+.+|+.+. ..| .+|++|+++.....+..... .+ ......+..+++++||+|+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~-------~~----~~~~~~~~~e~~~~aDvVi 69 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDK-------YP----TVELADNEAEIFTKCDHSF 69 (277)
T ss_pred CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHH-------cC----CeEEeCCHHHHHhhCCEEE
Confidence 47999999999999999984 455 68999998654332221111 00 0112356788899999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
+++|. .....++ ++....++++..+|.+.-| +..+.|.+.+.
T Consensus 70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 99993 3444444 3333456788899999887 56667777664
No 111
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1e-05 Score=75.99 Aligned_cols=116 Identities=23% Similarity=0.298 Sum_probs=89.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l 242 (398)
+++|.||||+||..+++|+ ..-|.+|++||.++....+. ...+ .....+++|+ +..--+|-+
T Consensus 1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl 65 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL 65 (300)
T ss_pred CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence 5799999999999999998 78999999999998654321 1222 2234567766 456688999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~ 299 (398)
.+|...-|..+| ++.-..|.+|-++|+-+-..--|...-.+.|+...| .-+||=
T Consensus 66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~G 119 (300)
T COG1023 66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVG 119 (300)
T ss_pred EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEecc
Confidence 999887777776 567788999999999998888888778888887666 456653
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.25 E-value=1.3e-05 Score=73.11 Aligned_cols=146 Identities=20% Similarity=0.221 Sum_probs=84.8
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCC--------ccccccCCHHHHhhc
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE 236 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~~ 236 (398)
+|+|||.|.||+.+|..++ ..|++|..||+++.... ....+..-......+... .......+++++. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence 6999999999999999985 67999999999886421 122221111111111110 1122346788887 9
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceE
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvi 316 (398)
||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+= .-..|.+++.. .-.-.++=-|. |+...||.+ |+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv 150 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV 150 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence 999999999888888777788888889999998776653 44666666653 22345555553 332234443 56
Q ss_pred EcCCCC
Q 015895 317 VVPHIA 322 (398)
Q Consensus 317 lTPHia 322 (398)
-.|+.+
T Consensus 151 ~~~~T~ 156 (180)
T PF02737_consen 151 PGPKTS 156 (180)
T ss_dssp E-TTS-
T ss_pred CCCCCC
Confidence 666543
No 113
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=7e-05 Score=72.95 Aligned_cols=169 Identities=17% Similarity=0.256 Sum_probs=109.5
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++++....++ ..+++|+.+.+. + +.|++++..+ ..+++. +++..+-. |=|- |+....+.
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g 128 (284)
T PRK14190 56 AAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINVG 128 (284)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhHH
Confidence 3445688887665443 357777776654 1 4689999764 344443 34444322 3221 22111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~ 182 (398)
. ...+.++ ....++.-++.++ + +.+.++.||++.|||- ..+|+.+|.
T Consensus 129 ~------l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla~ 176 (284)
T PRK14190 129 R------MMLGQDT-FLPCTPHGILELL----K---------------------EYNIDISGKHVVVVGRSNIVGKPVGQ 176 (284)
T ss_pred H------HhcCCCC-CCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHHH
Confidence 1 1122232 4556666666544 1 1345899999999998 567999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ...++.|..++... .++.+.+++||+|+.+++. .++|..+.+
T Consensus 177 lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i--- 220 (284)
T PRK14190 177 LL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV--- 220 (284)
T ss_pred HH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc---
Confidence 98 57899998875421 3678889999999999964 557888777
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++.-.
T Consensus 221 k~gavVIDvGi~~ 233 (284)
T PRK14190 221 KEGAVVIDVGVNR 233 (284)
T ss_pred CCCCEEEEeeccc
Confidence 8999999998754
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.18 E-value=7.8e-06 Score=78.42 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=71.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
++|||||+|+||+.+++.+. ..|. .+.+|+++.... +.+.+. .+ +.....+..+++++||+|++
T Consensus 1 m~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~-------~~----~~~~~~~~~~~~~~aDvVil 67 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAER-------FP----KVRIAKDNQAVVDRSDVVFL 67 (258)
T ss_pred CeEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHH-------cC----CceEeCCHHHHHHhCCEEEE
Confidence 37999999999999999984 4453 357888876542 221111 00 12234578888999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
++| ......++.. + .++++.++|.++-| +..+.|.+.+..+
T Consensus 68 av~-p~~~~~vl~~--l-~~~~~~~vis~~ag--~~~~~l~~~~~~~ 108 (258)
T PRK06476 68 AVR-PQIAEEVLRA--L-RFRPGQTVISVIAA--TDRAALLEWIGHD 108 (258)
T ss_pred EeC-HHHHHHHHHH--h-ccCCCCEEEEECCC--CCHHHHHHHhCCC
Confidence 999 3455665542 3 35788999998743 6777788777653
No 115
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.17 E-value=1.7e-06 Score=80.83 Aligned_cols=134 Identities=14% Similarity=0.204 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH-hcCCcEEEE-EcCC
Q 015895 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLY 198 (398)
Q Consensus 121 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la-~~fG~~V~~-~d~~ 198 (398)
...++|.+..++...|++.. |. ..++++|||+|.+|+.+++.+. ...|+++++ +|+.
T Consensus 61 ~~~~gy~v~~l~~~~~~~l~------------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 61 KRGVGYNVEELLEFIEKILG------------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CCCCCeeHHHHHHHHHHHhC------------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 33456999999999998761 22 2357999999999999998531 357888775 5765
Q ss_pred hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCChh---hhhhccHHHHhcCCCCcEEEEcCC
Q 015895 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~l~~Plt~~---T~~li~~~~~~~mk~gailIN~aR 273 (398)
+... .. ... ...+....++++++++ .|.|++++|.+.. ...+.......-+....+.+|+.+
T Consensus 120 ~~~~-~~----------~i~--g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 120 PEKI-GT----------KIG--GIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred hhhc-CC----------EeC--CeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 4321 00 000 1112223467888765 9999999998664 223333344555777789999999
Q ss_pred CchhcHHHHHHHHhc
Q 015895 274 GPVIDEVALVEHLKQ 288 (398)
Q Consensus 274 G~~vde~aL~~aL~~ 288 (398)
|.+|+.++|..+|..
T Consensus 187 ~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 187 DVIVRNVDLTVELQT 201 (213)
T ss_pred CCEEEEechHHHHHH
Confidence 999999999999874
No 116
>PRK07680 late competence protein ComER; Validated
Probab=98.16 E-value=2e-05 Score=76.29 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=72.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|||||+|+||+.+|+.| ...| .+|.+|||+.... +.+.+.+ .+.....+..+++..||+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~~-~~~~~~~-----------~g~~~~~~~~~~~~~aDiVi 67 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAKA-YHIKERY-----------PGIHVAKTIEEVISQSDLIF 67 (273)
T ss_pred CEEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHHH-HHHHHHc-----------CCeEEECCHHHHHHhCCEEE
Confidence 3699999999999999997 4555 3799999987542 2211110 01222357788889999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
+++|. .....++ ++....++++.++|+++-| +..+.|.+.+.
T Consensus 68 lav~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 68 ICVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 99983 4455655 3444567888999999855 36666766654
No 117
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.16 E-value=1.5e-05 Score=82.78 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEccCCChhhhh
Q 015895 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH 252 (398)
Q Consensus 176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l~~Plt~~T~~ 252 (398)
||+.+|++| ...|.+|.+||+++.... .+.+. .+. ..+.....+++|+++. +|+|++++|..+.+..
T Consensus 1 MG~~mA~nL-~~~G~~V~v~nrt~~~~~-~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNI-ASHGYTVAVYNRTPEKTD-EFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHH-HhCCCeEEEECCCHHHHH-HHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 799999998 578999999999976532 22110 010 0123345789998874 8999999999999999
Q ss_pred hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP 303 (398)
Q Consensus 253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP 303 (398)
++ .+.+..+.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus 71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 98 468899999999999999999999999999998877766666676654
No 118
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.15 E-value=1.4e-05 Score=71.15 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=64.9
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEEEcc
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
+|+|+|.|+.|.++|..+ ...|.+|..|++.... .+...+. .......... +.......+++++++.||+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 589999999999999998 5788999999998743 2221110 0000000000 111223468999999999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
|.. ..+.++ ++....++++..+|+++.|=
T Consensus 78 Ps~-~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 953 334443 55666678999999998763
No 119
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.13 E-value=0.00024 Score=74.69 Aligned_cols=227 Identities=18% Similarity=0.185 Sum_probs=122.8
Q ss_pred HHHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCCcEEE-ecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895 29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVI-GQLTEDWGETLFAALSRAGGKAFSNMAVGY 97 (398)
Q Consensus 29 ~~~~l~~~~~~~~~~~~--~~~~~~~eel~~~---~~-----~~~d~vi-~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~ 97 (398)
..+.|.+.|+++.+-.. .....+.+|..+. +. +++|.|+ +.. .+.+.++.++. |-.+++......
T Consensus 22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV~~---P~~~e~~~l~~-g~~li~~l~p~~ 97 (509)
T PRK09424 22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKVNA---PSDDEIALLRE-GATLVSFIWPAQ 97 (509)
T ss_pred HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEeCC---CCHHHHHhcCC-CCEEEEEeCccc
Confidence 56777777888766543 2233456665531 10 1356665 332 23455667765 334555555544
Q ss_pred cccCchHhhhcCceEEe---cCCC-C------CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcc-cccccCCC
Q 015895 98 NNVDVNAANKYGIAVGN---TPGV-L------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQ 166 (398)
Q Consensus 98 d~iD~~~~~~~gI~V~n---~p~~-~------~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~-~g~~l~gk 166 (398)
|.=-++++.++||.+.. .|.. . =.++|+.+= .|-+..+.+.+ +++ .+... ......+.
T Consensus 98 ~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~---~~g~~taaG~~pg~ 166 (509)
T PRK09424 98 NPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRF---FTGQITAAGKVPPA 166 (509)
T ss_pred CHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--ccc---CCCceeccCCcCCC
Confidence 54456777889988877 2210 0 122233222 22222221111 111 00000 00135699
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcC--CCCccccccC--C--------HH
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANG--EQPVTWKRAS--S--------MD 231 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~--s--------l~ 231 (398)
+|.|+|.|.+|...++.+ +.+|++|+++|+++... + ..+.++... +... ....++.... + +.
T Consensus 167 kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rl-e-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVA-E-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred EEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 999999999999999985 89999999999987653 2 122222210 0000 0000000000 1 12
Q ss_pred HHhhcCCEEEEccCCChh-hhhhccHHHHhcCCCCcEEEEcCC
Q 015895 232 EVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 232 ell~~aDiV~l~~Plt~~-T~~li~~~~~~~mk~gailIN~aR 273 (398)
+.+..+|+|+.+...... ...++.++.++.||+|+++++++=
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 223579999988754221 335667899999999999999974
No 120
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.09 E-value=7e-06 Score=70.72 Aligned_cols=93 Identities=23% Similarity=0.316 Sum_probs=53.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
...+|||||.|++|..+++.| +..|..|..+ +++.... +.... . .+.....+++|++..+|++++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa-~~a~~----------~--~~~~~~~~~~~~~~~aDlv~i 74 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASA-ERAAA----------F--IGAGAILDLEEILRDADLVFI 74 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HH-HHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccc-ccccc----------c--cccccccccccccccCCEEEE
Confidence 446899999999999999998 6889998776 4544221 11000 0 111223567889999999999
Q ss_pred ccCCChhhhhhccHHHHhc--CCCCcEEEEcC
Q 015895 243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS 272 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~--mk~gailIN~a 272 (398)
++|.+ .-..+ -++.-.. .++|.+++-||
T Consensus 75 avpDd-aI~~v-a~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 75 AVPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp -S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred EechH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence 99964 33333 2333333 68999999985
No 121
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.09 E-value=1.7e-05 Score=76.77 Aligned_cols=107 Identities=20% Similarity=0.370 Sum_probs=68.2
Q ss_pred CeEEEEecChhHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~-fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|||||+|.||+.+++.+.+. .+++ +.++|+++... +.+.+. .+ ...+.++++++.++|+|++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~-------~~-----~~~~~~~~ell~~~DvVvi~ 68 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK-------TG-----AKACLSIDELVEDVDLVVEC 68 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh-------cC-----CeeECCHHHHhcCCCEEEEc
Confidence 4799999999999999987432 2566 45689886542 221111 11 12346899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~ 290 (398)
+|. +... +-....++.|.-++..+.|.+.|. +.|.++.+++.
T Consensus 69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 984 2221 112233455666677777777664 35666666654
No 122
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=0.00016 Score=70.34 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=106.6
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++.+....++ ..+++++.+.+.. +.|++++..+ ..+++ ++++..+-. |=|- |+..+.+
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-- 126 (281)
T PRK14183 56 CDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KDVD----GFHPYNV-- 126 (281)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hccc----ccChhhh--
Confidence 344688776655443 3577777765531 4689999865 34554 344444332 3221 1111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
|-...+.+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 127 ----g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~~VG~Pla~l 176 (281)
T PRK14183 127 ----GRLVTGLD-GFVPCTPLGVMELL----E---------------------EYEIDVKGKDVCVVGASNIVGKPMAAL 176 (281)
T ss_pred ----hHHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCcchHHHHHH
Confidence 11111222 24555666555544 1 12358999999999999 899999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..-|+.|..+..+. .++.+..++||+|+++++- .+++..+. .|
T Consensus 177 L-~~~~AtVti~hs~T----------------------------~~l~~~~~~ADIvV~AvGk----p~~i~~~~---vk 220 (281)
T PRK14183 177 L-LNANATVDICHIFT----------------------------KDLKAHTKKADIVIVGVGK----PNLITEDM---VK 220 (281)
T ss_pred H-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCCEEEEecCc----ccccCHHH---cC
Confidence 8 57789998764321 3678889999999999974 55676655 47
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++--.
T Consensus 221 ~gavvIDvGin~ 232 (281)
T PRK14183 221 EGAIVIDIGINR 232 (281)
T ss_pred CCcEEEEeeccc
Confidence 999999998543
No 123
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=0.00019 Score=70.01 Aligned_cols=169 Identities=21% Similarity=0.255 Sum_probs=108.3
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+. + +.|++++..+ ..+++. +++..+-. |=|- |+..+.+..
T Consensus 54 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~ 126 (287)
T PRK14173 54 AKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KDVD----GFHPLNVGR 126 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhhHH
Confidence 445688887665443 357787776654 1 3789999865 344443 34444322 3221 221111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
. ..+.+ .....++.-++.++- +.+.++.||++.|||-+ .+|+.+|..
T Consensus 127 l------~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla~l 174 (287)
T PRK14173 127 L------WMGGE-ALEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLAAL 174 (287)
T ss_pred H------hcCCC-CCCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHHHH
Confidence 1 11122 245556666655541 13458999999999985 579999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...++.|..+.... .++.+..++||+|+++++- .+++..+.+ |
T Consensus 175 L-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~v---k 218 (287)
T PRK14173 175 L-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAVGR----PHLITPEMV---R 218 (287)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---C
Confidence 8 57889998775421 3688889999999999974 467777655 8
Q ss_pred CCcEEEEcCCCch
Q 015895 264 KEAILVNCSRGPV 276 (398)
Q Consensus 264 ~gailIN~aRG~~ 276 (398)
+|+++||++.-.+
T Consensus 219 ~GavVIDVGin~~ 231 (287)
T PRK14173 219 PGAVVVDVGINRV 231 (287)
T ss_pred CCCEEEEccCccc
Confidence 9999999987553
No 124
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.04 E-value=3.2e-05 Score=71.75 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=66.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++++|+|.|+||+.+|+++ ...|.+|++-.++.++..+...+. .+.. -...+.++..+.||+|++.+|
T Consensus 2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~-------l~~~----i~~~~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAA-------LGPL----ITGGSNEDAAALADVVVLAVP 69 (211)
T ss_pred cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHh-------hccc----cccCChHHHHhcCCEEEEecc
Confidence 5899999999999999998 578999998877665543332111 1111 123578899999999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
.. ...++ .++...... |.++|++.-.
T Consensus 70 ~~-a~~~v-~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 70 FE-AIPDV-LAELRDALG-GKIVIDATNP 95 (211)
T ss_pred HH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence 73 33333 255555555 8899998764
No 125
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.04 E-value=1.5e-05 Score=71.75 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=69.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc------------ccccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA 227 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~ 227 (398)
..+...++.|+|.|++|+..++.+ +++|++|..+|.++... ++..........-. ..... .....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE 93 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence 357778999999999999999996 89999999999887532 11111110000000 00000 01112
Q ss_pred CCHHHHhhcCCEEEEc-cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 228 ~sl~ell~~aDiV~l~-~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
..+.+.++.+|+|+.+ +--.+..-.+|.++.++.||+|++++|+|=
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 2478889999998853 323456778999999999999999999853
No 126
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=0.00027 Score=68.78 Aligned_cols=168 Identities=17% Similarity=0.274 Sum_probs=108.4
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++ ++++..+-. |=|- |+....+..
T Consensus 55 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~ 127 (282)
T PRK14169 55 AEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSVGR 127 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhhHH
Confidence 445688887665544 3577777766641 3689999765 34443 444444332 3221 221111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
...+.+ +....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 128 ------l~~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~l 175 (282)
T PRK14169 128 ------LWANEP-TVVASTPYGIMALL----D---------------------AYDIDVAGKRVVIVGRSNIVGRPLAGL 175 (282)
T ss_pred ------HhcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence 112223 24566676666655 1 12458999999999995 579999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...|+.|..+.... .++.+..++||+|+++++- .++|..+. .|
T Consensus 176 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~---vk 219 (282)
T PRK14169 176 M-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAVGV----PHFIGADA---VK 219 (282)
T ss_pred H-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---cC
Confidence 8 67899998774321 3688889999999999985 56677664 57
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++--.
T Consensus 220 ~GavVIDvGin~ 231 (282)
T PRK14169 220 PGAVVIDVGISR 231 (282)
T ss_pred CCcEEEEeeccc
Confidence 999999998643
No 127
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.01 E-value=5.8e-05 Score=71.51 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC---cE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK---MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+++|||||.|+||+.+++.++ ..| .+ ++++++......+.+.+.+ + .....+.+++++++|+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~Di 69 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLL-KTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDT 69 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHH-hCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCE
Confidence 3568999999999999999874 333 33 7778775333333221111 1 2223578889999999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
|++++|. ...+.++ ++.-..++ +.++|.++=| ++.+.|.+.+..+
T Consensus 70 Viiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 70 IVLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred EEEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 9999994 2334443 22222233 5689999876 4555676666544
No 128
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=0.00034 Score=67.93 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=106.3
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|.+++....++ ..+++|+.+.+.. +.|+|++..+ ..+++. +++..+-. |=|- |+....+..
T Consensus 57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g~ 129 (278)
T PRK14172 57 ANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KDID----CLTFISVGK 129 (278)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccC----ccCHhhHHH
Confidence 445688877665443 3577877766542 4689999865 345543 44444332 3221 111111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
...+-+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 130 ------l~~g~~-~~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla~l 177 (278)
T PRK14172 130 ------FYKGEK-CFLPCTPNSVITLI----K---------------------SLNIDIEGKEVVVIGRSNIVGKPVAQL 177 (278)
T ss_pred ------HhCCCC-CCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence 111122 24455665555544 1 12357999999999995 579999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..-|+.|..++... .++.+..++||+|+++++- .++|..+. .|
T Consensus 178 L-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~---ik 221 (278)
T PRK14172 178 L-LNENATVTICHSKT----------------------------KNLKEVCKKADILVVAIGR----PKFIDEEY---VK 221 (278)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---cC
Confidence 8 67899998876421 3688889999999999985 55677655 57
Q ss_pred CCcEEEEcCCC
Q 015895 264 KEAILVNCSRG 274 (398)
Q Consensus 264 ~gailIN~aRG 274 (398)
+|+++||++--
T Consensus 222 ~gavVIDvGin 232 (278)
T PRK14172 222 EGAIVIDVGTS 232 (278)
T ss_pred CCcEEEEeecc
Confidence 99999999753
No 129
>PLN00203 glutamyl-tRNA reductase
Probab=97.98 E-value=2.5e-05 Score=82.25 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++.+++|+|||.|.||+.+++.| ...|. +|++++|+.... +.+.+.+ +.....+....++.+.+.+||+|
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV 333 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV 333 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence 48899999999999999999998 57886 799999987542 2222111 10111112234677889999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCC-------cEEEEcCCCc
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRGP 275 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~g-------ailIN~aRG~ 275 (398)
+.++| ....+|.++.++.++++ -++||.|-..
T Consensus 334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 99987 45667888888877432 3677776543
No 130
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=0.00053 Score=66.76 Aligned_cols=168 Identities=18% Similarity=0.294 Sum_probs=107.6
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. ..|++++..+ ..+++. ++++.+-. |=|- |+..+.+..
T Consensus 56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~g~ 128 (284)
T PRK14170 56 TEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNVGN 128 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhhhH
Confidence 345688876665444 3577777766641 4689999765 344443 44444332 3221 222111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~ 183 (398)
. ..+.+ +....++.-++.++ + +.|.++.||++.|||-+. +|+.+|..
T Consensus 129 l------~~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrS~iVGkPla~l 176 (284)
T PRK14170 129 L------FIGKD-SFVPCTPAGIIELI----K---------------------STGTQIEGKRAVVIGRSNIVGKPVAQL 176 (284)
T ss_pred H------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 11112 24566666666555 1 134689999999999965 69999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...++.|..+.... .++.+..++||+|+++++- .++|..+. .|
T Consensus 177 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----~~~i~~~~---vk 220 (284)
T PRK14170 177 L-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVATGL----AKFVKKDY---IK 220 (284)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHH---cC
Confidence 8 57899998775421 3688889999999999985 45676654 47
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++--.
T Consensus 221 ~GavVIDvGin~ 232 (284)
T PRK14170 221 PGAIVIDVGMDR 232 (284)
T ss_pred CCCEEEEccCcc
Confidence 999999998654
No 131
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.96 E-value=3.5e-05 Score=76.75 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=65.4
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--hhhhh--hh--cCCCCccccccCCHHHHhhcCCEEE
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--YGQFL--KA--NGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~--~~~~~--~~--~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
|||+|||+||+.+++.+.+.-++++++............... |.... .. ......+.....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 699999999999999864345788776543222211111111 11100 00 0000011112346999999999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
.|+| .+.+..+++.+.+|+.+++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9976 668899999999999999998754
No 132
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.95 E-value=1.8e-05 Score=81.45 Aligned_cols=102 Identities=19% Similarity=0.261 Sum_probs=70.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ..+.+. .+.. .....++.+.+..+|+|
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~-------~g~~---~i~~~~l~~~l~~aDvV 244 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKE-------LGGE---AVKFEDLEEYLAEADIV 244 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHH-------cCCe---EeeHHHHHHHHhhCCEE
Confidence 48899999999999999999998 5788 7899999987542 211111 1111 11123577888999999
Q ss_pred EEccCCChhhhhhccHHHHhcCC----CCcEEEEcCCCchhc
Q 015895 241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID 278 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk----~gailIN~aRG~~vd 278 (398)
+.+++ .+..+++++.++.+. ...++||.+...=||
T Consensus 245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 99976 445678888777652 234788887543333
No 133
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.95 E-value=6.1e-05 Score=69.02 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=79.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
|+|+|||+|.+|..+|-.++ ..|.+|++||...... +.+.+. ....+++.. ..-......+.++.+++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a 77 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA 77 (185)
T ss_dssp -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence 68999999999999999985 8899999999987532 222110 000011100 000122235678888999
Q ss_pred CEEEEccCCChhhhhhc--------cHHHHhcCCCCcEEEEcCCCchhcHHHH-HHHHhcCCccEEEec-cCCCCCCCC-
Q 015895 238 DVISLHPVLDKTTYHLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK- 306 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li--------~~~~~~~mk~gailIN~aRG~~vde~aL-~~aL~~g~i~gAalD-V~~~EP~~~- 306 (398)
|++++|+|...+..+-. -+.....++++.++|.-|+-.+=-.+.+ ...|++..-.+.-.+ +|.+|=...
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G 157 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG 157 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence 99999998543322221 2345667899999999999887767754 344443222111122 245554321
Q ss_pred ---CCCCCCCceEE
Q 015895 307 ---PGLSEMKNAIV 317 (398)
Q Consensus 307 ---~~L~~~~nvil 317 (398)
..+...|+|++
T Consensus 158 ~a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 158 RAIEDFRNPPRVVG 171 (185)
T ss_dssp SHHHHHHSSSEEEE
T ss_pred CcchhccCCCEEEE
Confidence 24667788864
No 134
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.95 E-value=4e-05 Score=73.71 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=67.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
++|+|||+|.||+.+|+.+ ...| .+|.+|||+.... +.+.+.+ + .....+.++++.+||+|++
T Consensus 3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil 68 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL 68 (267)
T ss_pred CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence 5799999999999999987 4556 6899999986542 2211111 1 1223567788899999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
++|. ...+.++.. ....+ +..+|.+.-|- ..+.+.+.+.
T Consensus 69 ~v~~-~~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 69 AVKP-QVMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred EcCH-HHHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 9984 334444422 22223 46788876664 4556666665
No 135
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=0.00044 Score=67.36 Aligned_cols=169 Identities=15% Similarity=0.201 Sum_probs=106.5
Q ss_pred HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCc
Q 015895 31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV 102 (398)
Q Consensus 31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~ 102 (398)
+..++.|++++....++ ..+++|+.+.+. + +.|++++..+ ..+++ .+++..+-. |=|- |+..+.+
T Consensus 56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~ 128 (284)
T PRK14177 56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF 128 (284)
T ss_pred HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence 33455688877655443 357787776553 1 4799999865 23443 344444322 3221 2211111
Q ss_pred hHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 015895 103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA 181 (398)
Q Consensus 103 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA 181 (398)
. -...+.+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|
T Consensus 129 g------~l~~g~~-~~~PcTp~avi~ll----~---------------------~y~i~l~Gk~vvViGrS~iVGkPla 176 (284)
T PRK14177 129 G------KLSMGVE-TYLPCTPYGMVLLL----K---------------------EYGIDVTGKNAVVVGRSPILGKPMA 176 (284)
T ss_pred H------HHHcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence 1 1112222 24455665555543 1 12357999999999995 5799999
Q ss_pred HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 182 ~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
..| ..-|+.|..++... .++.+..++||+|+++++- .+++..+.
T Consensus 177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~--- 220 (284)
T PRK14177 177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADW--- 220 (284)
T ss_pred HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHH---
Confidence 998 67899999876422 3688889999999999974 55676554
Q ss_pred CCCCcEEEEcCCC
Q 015895 262 MKKEAILVNCSRG 274 (398)
Q Consensus 262 mk~gailIN~aRG 274 (398)
.|+|+++||++--
T Consensus 221 ik~gavVIDvGin 233 (284)
T PRK14177 221 ISEGAVLLDAGYN 233 (284)
T ss_pred cCCCCEEEEecCc
Confidence 5799999999863
No 136
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=0.00053 Score=66.73 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=106.8
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|.+.+....++ ..+++|+.+.+.. +.|++++..+ ..+++ ++++..+-. |=|- |+..+.+..
T Consensus 55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~ 127 (282)
T PRK14166 55 CEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINVGY 127 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhHH
Confidence 445688876665443 3577877766642 4689999865 34444 344444332 3221 222222111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
. ..+........++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 128 l------~~g~~~~~~PcTp~avi~lL----~---------------------~y~i~l~Gk~vvVvGrS~iVGkPla~l 176 (282)
T PRK14166 128 L------NLGLESGFLPCTPLGVMKLL----K---------------------AYEIDLEGKDAVIIGASNIVGRPMATM 176 (282)
T ss_pred H------hcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1 11111124555666665544 1 12458999999999996 579999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ...++.|..+..+. .++.+..++||+|+++++- .++|..+. .|
T Consensus 177 L-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~---vk 220 (282)
T PRK14166 177 L-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---VK 220 (282)
T ss_pred H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---cC
Confidence 8 57899998775422 3688899999999999975 56677654 57
Q ss_pred CCcEEEEcCCC
Q 015895 264 KEAILVNCSRG 274 (398)
Q Consensus 264 ~gailIN~aRG 274 (398)
+|+++||++--
T Consensus 221 ~GavVIDvGin 231 (282)
T PRK14166 221 EGVIVVDVGIN 231 (282)
T ss_pred CCCEEEEeccc
Confidence 99999999853
No 137
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.91 E-value=3.4e-05 Score=69.04 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=57.4
Q ss_pred ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 160 g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
+.++.||++.|||-+. +|+.+|..| ...|+.|...+.+. .++++.+++||
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD 81 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD 81 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence 3579999999999985 999999998 68899998775432 36888899999
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~ 276 (398)
+|+.+++- .++|..+ .+|+|+++||++.-..
T Consensus 82 IVVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 82 IVVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp EEEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred EEeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence 99999974 5666544 5699999999988654
No 138
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.91 E-value=0.00058 Score=66.54 Aligned_cols=168 Identities=21% Similarity=0.237 Sum_probs=106.9
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. ..|++++..+ ..++. ++++..+-. |=|- |+..+.+..
T Consensus 57 a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~ 129 (284)
T PRK14193 57 CAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNLGR 129 (284)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhhhH
Confidence 345688876655443 3577877766542 3689999765 34453 345554433 3221 221111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
...+.++ ....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 130 ------l~~~~~~-~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla~l 177 (284)
T PRK14193 130 ------LVLNEPA-PLPCTPRGIVHLL----R---------------------RYDVELAGAHVVVIGRGVTVGRPIGLL 177 (284)
T ss_pred ------HhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence 1122222 3455666555544 1 13458999999999985 679999998
Q ss_pred HHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 184 MVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 184 la~~--fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
| .. .++.|..+.... .++.+..++||+|+++++- .++|..+.
T Consensus 178 L-~~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~AvGk----p~~i~~~~--- 221 (284)
T PRK14193 178 L-TRRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAAGV----AHLVTADM--- 221 (284)
T ss_pred H-hhccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEecCC----cCccCHHH---
Confidence 8 45 689998775421 3688899999999999985 45777654
Q ss_pred CCCCcEEEEcCCCc
Q 015895 262 MKKEAILVNCSRGP 275 (398)
Q Consensus 262 mk~gailIN~aRG~ 275 (398)
.|+|+++||++.-.
T Consensus 222 ik~GavVIDvGin~ 235 (284)
T PRK14193 222 VKPGAAVLDVGVSR 235 (284)
T ss_pred cCCCCEEEEccccc
Confidence 57999999998754
No 139
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=0.00051 Score=67.36 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=104.6
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |=|- |+....+..
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~ 128 (295)
T PRK14174 56 CKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KDVD----GFHPENLGR 128 (295)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhHHH
Confidence 445688887665543 3577777766542 3689999765 445554 34444322 3221 111111111
Q ss_pred hhhcCceEEec-CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 105 ~~~~gI~V~n~-p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
. ..+. ..+....+|.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 129 l------~~~~~~~~~~PcTp~ail~ll----~---------------------~y~i~l~Gk~vvViGrS~iVG~Pla~ 177 (295)
T PRK14174 129 L------VMGHLDKCFVSCTPYGILELL----G---------------------RYNIETKGKHCVVVGRSNIVGKPMAN 177 (295)
T ss_pred H------hcCCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence 1 1111 0123445555443332 2 12357999999999995 57999999
Q ss_pred HHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895 183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (398)
Q Consensus 183 ~la~~---fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~ 259 (398)
.|.+. .++.|....... .++.+.+++||+|+.+++. .++|..+.+
T Consensus 178 lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~~v 225 (295)
T PRK14174 178 LMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITADMV 225 (295)
T ss_pred HHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHHHc
Confidence 87432 477877654321 3578889999999999964 277888887
Q ss_pred hcCCCCcEEEEcCCCc
Q 015895 260 ATMKKEAILVNCSRGP 275 (398)
Q Consensus 260 ~~mk~gailIN~aRG~ 275 (398)
|+|+++||++-..
T Consensus 226 ---k~GavVIDVgi~~ 238 (295)
T PRK14174 226 ---KPGAVVIDVGINR 238 (295)
T ss_pred ---CCCCEEEEeeccc
Confidence 9999999998543
No 140
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.90 E-value=0.00062 Score=66.76 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=106.8
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++.+....++ ..+++|+.+.+. + +.|++++..+ ..+++ ++++..+-. |=|- |+....+.
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g 128 (297)
T PRK14186 56 ACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KDAD----GLHPLNLG 128 (297)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHH
Confidence 3445688876665443 357777776654 2 3689999865 34443 344444332 3221 11111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
-...+.+ .....+|.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 129 ------~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvVIGrS~iVGkPla~ 176 (297)
T PRK14186 129 ------RLVKGEP-GLRSCTPAGVMRLL----R---------------------SQQIDIAGKKAVVVGRSILVGKPLAL 176 (297)
T ss_pred ------HHhCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 1112222 23455565555544 1 12458999999999995 57999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ...|+.|..+.... .++.+..++||+|+++++- .+++..+. .
T Consensus 177 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~---i 220 (297)
T PRK14186 177 ML-LAANATVTIAHSRT----------------------------QDLASITREADILVAAAGR----PNLIGAEM---V 220 (297)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---c
Confidence 98 67899998774321 3688899999999999984 45676654 5
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++--.
T Consensus 221 k~gavVIDvGin~ 233 (297)
T PRK14186 221 KPGAVVVDVGIHR 233 (297)
T ss_pred CCCCEEEEecccc
Confidence 7999999998654
No 141
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.89 E-value=8e-05 Score=59.45 Aligned_cols=67 Identities=24% Similarity=0.390 Sum_probs=53.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+ |+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence 358899999999999999999998 566 566665531 99
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
++.+.+- .+.+.++..+.+++++++++++
T Consensus 58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 58 LVTATPA----GVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence 9999874 4555566788899999999875
No 142
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=0.00097 Score=65.06 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=106.5
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|.+++....++ ..+++|+.+.+. ++.|++++..+ ..+++. ++++.+-. |=|- |+..+.+..
T Consensus 51 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~n~g~ 123 (287)
T PRK14181 51 ATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KDVD----GLHPVNMGK 123 (287)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence 445688877665443 357777776663 24799999865 345543 44444332 3221 221111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
...+...+....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 124 ------l~~g~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~l 172 (287)
T PRK14181 124 ------LLLGETDGFIPCTPAGIIELL----K---------------------YYEIPLHGRHVAIVGRSNIVGKPLAAL 172 (287)
T ss_pred ------HhcCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence 111221234555666555544 1 12358999999999996 579999998
Q ss_pred HHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895 184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (398)
Q Consensus 184 la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~ 259 (398)
| ..- ++.|..+.... .++.+.+++||+|+++++- .+++..+.
T Consensus 173 L-~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~- 218 (287)
T PRK14181 173 L-MQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADIIIAAIGV----PLFIKEEM- 218 (287)
T ss_pred H-HhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 8 455 78888764321 3688889999999999975 46777655
Q ss_pred hcCCCCcEEEEcCCCc
Q 015895 260 ATMKKEAILVNCSRGP 275 (398)
Q Consensus 260 ~~mk~gailIN~aRG~ 275 (398)
.|+|+++||++--.
T Consensus 219 --ik~GavVIDvGin~ 232 (287)
T PRK14181 219 --IAEKAVIVDVGTSR 232 (287)
T ss_pred --cCCCCEEEEecccc
Confidence 47999999998644
No 143
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.88 E-value=2.2e-05 Score=76.37 Aligned_cols=102 Identities=20% Similarity=0.342 Sum_probs=75.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
.+..-+|.|||.|-+|.+-||.+ .++|++|...|.+... ++++-+.|+.++ .........+++.+.++|+|+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~rv------~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGGRV------HTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCcee------EEEEcCHHHHHHHhhhccEEE
Confidence 46667899999999999999985 7999999999998753 333333332111 111122345889999999997
Q ss_pred --EccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 242 --LHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 242 --l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+.+|. .+.-.++.++.+++||||+++||++
T Consensus 237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence 44664 4567788899999999999999985
No 144
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.87 E-value=0.00078 Score=65.76 Aligned_cols=169 Identities=15% Similarity=0.207 Sum_probs=106.5
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++++....++ ..+++|+.+.+. +..|++++..+ ..+++ ++++..+-. |=|- |+....
T Consensus 56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N-- 126 (288)
T PRK14171 56 NAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLN-- 126 (288)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccc--
Confidence 3445688887665443 357888776664 24789999865 34444 344444322 3221 111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
.|-...+........++.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 127 ----~g~l~~g~~~~~~PcTp~av~~lL----~---------------------~y~i~l~GK~vvViGrS~iVGkPla~ 177 (288)
T PRK14171 127 ----VGYLHSGISQGFIPCTALGCLAVI----K---------------------KYEPNLTGKNVVIIGRSNIVGKPLSA 177 (288)
T ss_pred ----hhhhhcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence 111122221234555565555443 2 12357999999999996 57999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ..-++.|..+.... .++.+..++||+|++++.- .++|..+. .
T Consensus 178 lL-~~~~ATVtichs~T----------------------------~~L~~~~~~ADIvV~AvGk----p~~i~~~~---v 221 (288)
T PRK14171 178 LL-LKENCSVTICHSKT----------------------------HNLSSITSKADIVVAAIGS----PLKLTAEY---F 221 (288)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----CCccCHHH---c
Confidence 98 67899998765321 3688899999999999984 46777654 4
Q ss_pred CCCcEEEEcCCC
Q 015895 263 KKEAILVNCSRG 274 (398)
Q Consensus 263 k~gailIN~aRG 274 (398)
|+|+++||++--
T Consensus 222 k~GavVIDvGin 233 (288)
T PRK14171 222 NPESIVIDVGIN 233 (288)
T ss_pred CCCCEEEEeecc
Confidence 799999999853
No 145
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.86 E-value=7.2e-05 Score=72.01 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=63.0
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.++|||||+|+||+++++.+. .-+ -+++++|++.... +.....+..+++.+||+|
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V 61 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII 61 (260)
T ss_pred CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence 468999999999999999984 333 2589998865320 111234677888999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
++++|- ..++.++. +....++++. +|.+.-| +..+.+.+.+.
T Consensus 62 ilavkp-~~~~~vl~-~i~~~l~~~~-iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 62 VLAVKP-DLAGKVLL-EIKPYLGSKL-LISICGG--LNLKTLEEMVG 103 (260)
T ss_pred EEEeCH-HHHHHHHH-HHHhhccCCE-EEEEeCC--ccHHHHHHHcC
Confidence 999983 45666654 3333455554 4555444 33555555554
No 146
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.85 E-value=0.00014 Score=68.25 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=63.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+||| .|+||+.+|+.| ...|.+|.+++++.+.. +...+.+...+...+. .... ...+..+.++.+|+|++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence 4799997 999999999998 46789999999876542 2211111000000010 0001 1235678889999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~ 276 (398)
|. .....++ ++.-..++ +.++|+++-|--
T Consensus 77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred CH-HHHHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 95 3344444 22222344 589999977643
No 147
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.84 E-value=6.8e-05 Score=74.16 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=63.9
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+.|++|+|||.|.||+.+++.+ ...| .+|.++|++.... +.+.+.+ +.. .....++.+.+.++|+|+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvVi 243 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GGN---AVPLDELLELLNEADVVI 243 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EEeHHHHHHHHhcCCEEE
Confidence 7899999999999999999997 5555 6899999987542 1111111 211 111235677788999999
Q ss_pred EccCCChhhhhhccHHHHhcC-CCCcEEEEcCCC
Q 015895 242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRG 274 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG 274 (398)
.++|.. +.+.++ +..++.. +++.++||++..
T Consensus 244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCC
Confidence 999953 332222 3333322 356788887753
No 148
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.84 E-value=0.00095 Score=66.83 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=105.8
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHh---cC--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~---~~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++.+....++ ..+++|+.+.+ .+ +.|+|++..+ ..+++ ++++..+-. |=|- |+....+.
T Consensus 127 ~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KDVD----Gl~p~N~G 199 (364)
T PLN02616 127 ACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KDVD----GFHPLNIG 199 (364)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence 3445677765554333 35778877766 22 4789999865 34554 344444332 3221 22211111
Q ss_pred HhhhcCceEEe--cCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHH
Q 015895 104 AANKYGIAVGN--TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY 180 (398)
Q Consensus 104 ~~~~~gI~V~n--~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~v 180 (398)
.. ..+ -+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+
T Consensus 200 ~L------~~g~~~~-~f~PCTp~avielL----~---------------------~y~i~l~GK~vvVIGRS~iVGkPL 247 (364)
T PLN02616 200 RL------AMRGREP-LFVPCTPKGCIELL----H---------------------RYNVEIKGKRAVVIGRSNIVGMPA 247 (364)
T ss_pred HH------hcCCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHH
Confidence 11 111 12 23455555544433 2 12358999999999995 579999
Q ss_pred HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (398)
Q Consensus 181 A~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~ 260 (398)
|..| ...++.|..+.... .++.+..++||+|+.+++- .++|..+.
T Consensus 248 a~LL-~~~~ATVTicHs~T----------------------------~nl~~~~r~ADIVIsAvGk----p~~i~~d~-- 292 (364)
T PLN02616 248 ALLL-QREDATVSIVHSRT----------------------------KNPEEITREADIIISAVGQ----PNMVRGSW-- 292 (364)
T ss_pred HHHH-HHCCCeEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCcCCHHH--
Confidence 9998 67899998875321 3688899999999999974 55677654
Q ss_pred cCCCCcEEEEcCCCc
Q 015895 261 TMKKEAILVNCSRGP 275 (398)
Q Consensus 261 ~mk~gailIN~aRG~ 275 (398)
.|+|+++||++--.
T Consensus 293 -vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 -IKPGAVVIDVGINP 306 (364)
T ss_pred -cCCCCEEEeccccc
Confidence 47999999998643
No 149
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=0.00073 Score=65.90 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=105.3
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++.+....++ ..+++|+.+.+. + +.|++++..+ ..+++. +++..+-. |=|- |+....+
T Consensus 55 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~- 126 (286)
T PRK14184 55 ACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--KDVD----GFHPENM- 126 (286)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--cCcc----cCCHhhH-
Confidence 3445688877665443 357787776654 1 4689999865 345543 34443322 3221 1111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
|-...+-++ ....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 127 -----g~l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla~ 175 (286)
T PRK14184 127 -----GRLALGLPG-FRPCTPAGVMTLL----E---------------------RYGLSPAGKKAVVVGRSNIVGKPLAL 175 (286)
T ss_pred -----HHHhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 111112222 4455565544433 1 12358999999999995 56999999
Q ss_pred HHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895 183 MMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (398)
Q Consensus 183 ~la~~----fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~ 258 (398)
.| .. -++.|..+.... .++.+.+++||+|+.+++. .++|..+.
T Consensus 176 lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG~----p~li~~~~ 222 (286)
T PRK14184 176 ML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIGR----PRFVTADM 222 (286)
T ss_pred HH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence 88 55 678888765321 3688899999999999963 66788777
Q ss_pred HhcCCCCcEEEEcCC
Q 015895 259 LATMKKEAILVNCSR 273 (398)
Q Consensus 259 ~~~mk~gailIN~aR 273 (398)
+ |+|+++||++-
T Consensus 223 v---k~GavVIDVGi 234 (286)
T PRK14184 223 V---KPGAVVVDVGI 234 (286)
T ss_pred c---CCCCEEEEeee
Confidence 6 99999999974
No 150
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.83 E-value=0.00013 Score=72.48 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=74.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-----CccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-----PVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~sl~ell~~aDiV 240 (398)
++|+|||.|.||+.+|.+| ...|.+|.+||+.... +...+ .+......... +.......+. +.++.+|+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 5799999999999999998 4679999999985421 11110 00000000000 0001112344 567899999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g 293 (398)
++++|. ++....+ ++....++++.++|.+.-| +-..+.+.+.+...++..
T Consensus 78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA 127 (341)
T ss_pred EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence 999985 4555555 4456667899999988654 444566777776554433
No 151
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.82 E-value=0.00058 Score=66.99 Aligned_cols=169 Identities=15% Similarity=0.221 Sum_probs=106.1
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++.+....++ ..+++|+.+.+.. +.|++++..+ ..+++ ++++..+-. |=|- |+....+..
T Consensus 64 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~ 136 (299)
T PLN02516 64 CAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--KDVD----GFHPLNIGK 136 (299)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--cccC----ccCHhhHhh
Confidence 445688776655443 3578888766642 4689999765 34443 334444332 3221 111111111
Q ss_pred hhhcCceEEec-CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895 105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR 182 (398)
Q Consensus 105 ~~~~gI~V~n~-p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~ 182 (398)
...+. ..+....++.-++.++ + +.+.++.||++.|||-+. +|+.+|.
T Consensus 137 ------l~~~~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVIGRS~iVGkPla~ 185 (299)
T PLN02516 137 ------LAMKGREPLFLPCTPKGCLELL----S---------------------RSGIPIKGKKAVVVGRSNIVGLPVSL 185 (299)
T ss_pred ------HhcCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 11110 1224555666555544 1 124589999999999965 6999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ..-|+.|..+.... .++++.+++||+|+.++.- .++|..+. .
T Consensus 186 lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~ADIvv~AvGk----~~~i~~~~---v 229 (299)
T PLN02516 186 LL-LKADATVTVVHSRT----------------------------PDPESIVREADIVIAAAGQ----AMMIKGDW---I 229 (299)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---c
Confidence 88 57899998875421 3688899999999999974 36777655 4
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++--.
T Consensus 230 k~gavVIDvGin~ 242 (299)
T PLN02516 230 KPGAAVIDVGTNA 242 (299)
T ss_pred CCCCEEEEeeccc
Confidence 7999999998643
No 152
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.82 E-value=8.3e-05 Score=74.06 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
-+++||||.|.+|+..++.++..+ .-+|.+||++.... +.+.+. +.+.+ ..+..+.+.++++++||+|++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~g---~~v~~~~~~~eav~~aDiVita 199 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDYE---VPVRAATDPREAVEGCDILVTT 199 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence 468999999999999777653333 35899999988653 222221 11111 1123357899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
+|. +.-++..+ .+|+|+.+..++.-
T Consensus 200 T~s---~~P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 200 TPS---RKPVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cCC---CCcEecHH---HcCCCCEEEecCCC
Confidence 984 35666554 35999999999853
No 153
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.81 E-value=0.00083 Score=66.91 Aligned_cols=170 Identities=14% Similarity=0.253 Sum_probs=107.6
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++.+....++ ..+++|+.+.+.. +.|+|++..+ ..+++. +++...-. |=|- |+..+.+-.
T Consensus 111 a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~G~ 183 (345)
T PLN02897 111 CEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNVGN 183 (345)
T ss_pred HHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHHHH
Confidence 445688777665443 3577888776541 4789999865 345544 44443322 3221 222222111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~ 183 (398)
...+ +........++.-++.++ + +.+.++.||++.|||-+. +|+.+|..
T Consensus 184 L~~~-----~~~~~~~PCTp~avi~LL----~---------------------~~~i~l~GK~vvVIGRS~iVGkPla~L 233 (345)
T PLN02897 184 LAMR-----GREPLFVSCTPKGCVELL----I---------------------RSGVEIAGKNAVVIGRSNIVGLPMSLL 233 (345)
T ss_pred HhcC-----CCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHHHHH
Confidence 1111 000124556666666555 1 134589999999999965 69999998
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..-++.|..+.... .++.+..++||+|+.+++- .+++..+. .|
T Consensus 234 L-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~---vk 277 (345)
T PLN02897 234 L-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSW---LK 277 (345)
T ss_pred H-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---cC
Confidence 7 67889998764321 3678899999999999985 55677655 47
Q ss_pred CCcEEEEcCCCc
Q 015895 264 KEAILVNCSRGP 275 (398)
Q Consensus 264 ~gailIN~aRG~ 275 (398)
+|+++||++--.
T Consensus 278 ~GavVIDVGin~ 289 (345)
T PLN02897 278 PGAVVIDVGTTP 289 (345)
T ss_pred CCCEEEEccccc
Confidence 999999998643
No 154
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.80 E-value=0.00022 Score=67.40 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=100.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ 231 (398)
..+.++++.|+|.|.+|+.+|+.| ...|+ +++.+|++. ... +..+...+. +..+... . . .++.
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~ 92 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK 92 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence 468899999999999999999998 57787 599999982 211 111111111 1111001 1 1 3677
Q ss_pred HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC-ccEEEeccCCCCCCCCCCCC
Q 015895 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS 310 (398)
Q Consensus 232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~gAalDV~~~EP~~~~~L~ 310 (398)
+.++++|+|+.+.| .++++.+.++.|+++.++...+.. ..|.-+.++.+.|. +..-|. +.. ..
T Consensus 93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~----~~ 156 (226)
T cd05311 93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF----PN 156 (226)
T ss_pred HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC----cc
Confidence 78889999999887 577888999999999999988843 34444445555443 233331 111 23
Q ss_pred CCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 015895 311 EMKNAIVVPHIASASK-----WTREGMATLAALNVLGKIK 345 (398)
Q Consensus 311 ~~~nvilTPHia~~T~-----ea~~~~~~~~~~ni~~~l~ 345 (398)
+-.|+++-|-++-... .--+.|...+++.+..+..
T Consensus 157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 5679999998764221 1124455555566655544
No 155
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00078 Score=65.58 Aligned_cols=168 Identities=14% Similarity=0.230 Sum_probs=105.5
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+. + +.|++++..+ ..+++ ++++..+-. |=|- |+....+
T Consensus 56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~-- 126 (282)
T PRK14180 56 CAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDVD----GFHPTNV-- 126 (282)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cccc----ccChhhH--
Confidence 445688887665443 356777776553 2 3689999765 34444 344444332 3221 1111111
Q ss_pred hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895 105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM 183 (398)
Q Consensus 105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~ 183 (398)
|-...+...+....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|..
T Consensus 127 ----g~l~~g~~~~~~PcTp~aii~lL----~---------------------~y~i~l~Gk~vvViGrS~~VGkPla~l 177 (282)
T PRK14180 127 ----GRLQLRDKKCLESCTPKGIMTML----R---------------------EYGIKTEGAYAVVVGASNVVGKPVSQL 177 (282)
T ss_pred ----HHHhcCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence 11111211223455666555544 1 12457999999999995 579999999
Q ss_pred HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
| ..-|+.|..+.... .++.+..++||+|+++++- .++|..+. .|
T Consensus 178 L-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAvGk----p~~i~~~~---vk 221 (282)
T PRK14180 178 L-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM---VK 221 (282)
T ss_pred H-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEccCC----cCcCCHHH---cC
Confidence 8 67899998875421 3678889999999999985 55676644 57
Q ss_pred CCcEEEEcCCC
Q 015895 264 KEAILVNCSRG 274 (398)
Q Consensus 264 ~gailIN~aRG 274 (398)
+|+++||++--
T Consensus 222 ~gavVIDvGin 232 (282)
T PRK14180 222 EGAVVIDVGIN 232 (282)
T ss_pred CCcEEEEeccc
Confidence 99999999853
No 156
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=9.1e-05 Score=73.37 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=69.2
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
...++++|||.|.+|+.+++.+...++ .+|.+|+|+++. .+.+.+.+ ...+ .......++++.+++||+|+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi 194 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIIS 194 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEE
Confidence 346789999999999999986543355 589999998754 23322221 1111 11223467899999999998
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
.+.|.+ ..++.. +.+++|+ +||+.-........+-..+
T Consensus 195 ~aT~s~---~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 195 CATLST---EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred EeeCCC---CCEecH---HHcCCCC-EEEeeCCCCcccccCCHHH
Confidence 888843 455655 3568998 5555433333344443333
No 157
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.79 E-value=0.00018 Score=63.03 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=64.9
Q ss_pred ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 160 g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
|.+++||++.|+|- ..+|+.+|..| ...|++|...+.+. .++++..++||
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD 73 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD 73 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence 46899999999998 56788999987 67899998876422 26788899999
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
+|+.+++.. ++|+.+. +|+|+++||++...
T Consensus 74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 999999853 5677655 68999999998754
No 158
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.78 E-value=0.0001 Score=71.98 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 160 g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
+.++.||++.|||.|. +|+.+|..| ...|++|..+++.. .++.+.+++||
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD 204 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD 204 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence 3579999999999998 999999997 68899999887621 25677789999
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
+|+.+++. + +++..+. +|+|++++|++-..
T Consensus 205 IvI~AtG~-~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 205 IIVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred EEEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence 99999963 2 2676644 79999999997643
No 159
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.77 E-value=0.00028 Score=68.14 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=74.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|||||+|+||+.++.-+ ..-| -+|++.+|+..... .+.+.| +. ....+..++..++|+|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~-------g~-----~~~~~~~~~~~~advv~ 67 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEY-------GV-----VTTTDNQEAVEEADVVF 67 (266)
T ss_pred ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHc-------CC-----cccCcHHHHHhhCCEEE
Confidence 5799999999999999987 4556 58999999886643 222222 21 11456788999999999
Q ss_pred EccCCChhhhhhccHHHHhcCC---CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk---~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
+++. |+. -.+.++.++ ++.++|.++=| +..+.|.+++.+-++
T Consensus 68 LavK--Pq~----~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 68 LAVK--PQD----LEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred EEeC--hHh----HHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 9996 322 245666665 69999999888 456777777763333
No 160
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.0008 Score=65.48 Aligned_cols=170 Identities=16% Similarity=0.139 Sum_probs=108.3
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|..++....++ ..+++|+.+.+. + +.|++++..+ ..+++ ++++..+-. |=| |.+-
T Consensus 54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--KDV-------DGl~-- 121 (282)
T PRK14182 54 DCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--KDA-------DGFH-- 121 (282)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc-------CCCC--
Confidence 3445688877665443 357787776663 1 4689999865 34544 344444332 322 2221
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
....|-...+.++.....+|.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 122 -~~n~g~l~~g~~~~~~PcTp~avi~ll----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~ 175 (282)
T PRK14182 122 -PFNVGALSIGIAGVPRPCTPAGVMRML----D---------------------EARVDPKGKRALVVGRSNIVGKPMAM 175 (282)
T ss_pred -HhHHHHHhCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence 011222223333323455666555544 1 12357999999999995 57999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ..-++.|..+..+. .++.+..++||+|+++++- .++|..+. .
T Consensus 176 lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~AvGk----~~~i~~~~---i 219 (282)
T PRK14182 176 ML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAIGK----AELVKGAW---V 219 (282)
T ss_pred HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHH---c
Confidence 98 57789998875421 3678889999999999974 56777655 4
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++-..
T Consensus 220 k~gaiVIDvGin~ 232 (282)
T PRK14182 220 KEGAVVIDVGMNR 232 (282)
T ss_pred CCCCEEEEeecee
Confidence 7999999998644
No 161
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.76 E-value=6e-05 Score=77.70 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=66.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|++++|+|.|.||+.+++.+ ...|. +|++++++.... ..+.+.+ +.. .....++.+.+..+|+|
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV 246 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV 246 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence 47889999999999999999997 68897 899999987542 2111111 111 11123566778899999
Q ss_pred EEccCCChhhhhhccHHHHhcC-----CCCcEEEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR 273 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~m-----k~gailIN~aR 273 (398)
+.++|. ...++..+.++.+ ..+.++||++-
T Consensus 247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 999874 3445666666554 24567777754
No 162
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=0.0014 Score=64.32 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=105.6
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|++++....++ ..+++|+.+.+.. +.|+|++..+ ..+++ ++++..+-. |=|- |+..+.+.
T Consensus 55 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g 127 (297)
T PRK14167 55 DCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENVG 127 (297)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence 3445688887665543 3577777766542 3689999865 34444 344444322 3221 22111111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
. ...+.+ .....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 128 ~------l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~ 175 (297)
T PRK14167 128 R------LVAGDA-RFKPCTPHGIQKLL----A---------------------AAGVDTEGADVVVVGRSDIVGKPMAN 175 (297)
T ss_pred H------HhCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCcccHHHHHH
Confidence 1 111222 24556666666544 1 12357999999999995 57999999
Q ss_pred HHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895 183 MMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (398)
Q Consensus 183 ~la~~f---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~ 259 (398)
.|.+.+ ++.|..+.... .++.+..++||+|++++.- .++|..+.
T Consensus 176 lL~~~~~~~~aTVtvchs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~- 222 (297)
T PRK14167 176 LLIQKADGGNATVTVCHSRT----------------------------DDLAAKTRRADIVVAAAGV----PELIDGSM- 222 (297)
T ss_pred HHhcCccCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence 884332 78888764321 3688889999999999864 45777644
Q ss_pred hcCCCCcEEEEcCCCc
Q 015895 260 ATMKKEAILVNCSRGP 275 (398)
Q Consensus 260 ~~mk~gailIN~aRG~ 275 (398)
.|+|+++||++-..
T Consensus 223 --ik~gaiVIDvGin~ 236 (297)
T PRK14167 223 --LSEGATVIDVGINR 236 (297)
T ss_pred --cCCCCEEEEccccc
Confidence 57999999998543
No 163
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.74 E-value=0.00018 Score=70.20 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=74.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+|||.|.||..+|..|+ ..|.+|..|++ .+ ..+...+ .+-...... ..........+.+++...+|+|++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 47999999999999999984 56899999998 33 2222111 000000000 00000111245667678999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g 293 (398)
|. .++...+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.+
T Consensus 77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 95 3445544 3344446778888877665 444667777776655443
No 164
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.73 E-value=0.0011 Score=64.29 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=121.7
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--cccc-HHHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~-~~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|+..+....++ ..+++|+.+.+.+ ..++|++..+ ..++ ..+++...-- |=+ |.+--
T Consensus 54 ~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--KDV-------DG~hp- 122 (283)
T COG0190 54 AAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--KDV-------DGFHP- 122 (283)
T ss_pred HHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--CCc-------cccCh-
Confidence 3445677766655443 3678888876642 4799999764 2344 3444443221 221 22210
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA~ 182 (398)
..-|-...+ +...-..++.-++.++ | +.+.+|+||++.|||-++| |+.+|.
T Consensus 123 --~N~g~L~~~-~~~~~PCTp~gi~~ll----~---------------------~~~i~l~Gk~~vVVGrS~iVGkPla~ 174 (283)
T COG0190 123 --YNLGKLAQG-EPGFLPCTPAGIMTLL----E---------------------EYGIDLRGKNVVVVGRSNIVGKPLAL 174 (283)
T ss_pred --hHhcchhcC-CCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcCcHHHHH
Confidence 112223333 3333344444444332 2 1335899999999999875 899999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ..-++.|.++..+. .++.+..++||+|++++-. .++|..+ ..
T Consensus 175 lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~AvG~----p~~i~~d---~v 218 (283)
T COG0190 175 LL-LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAVGK----PHFIKAD---MV 218 (283)
T ss_pred HH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEecCC----ccccccc---cc
Confidence 98 57899999876532 3678889999999999964 5666643 46
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHH
Q 015895 263 KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW 327 (398)
Q Consensus 263 k~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~e 327 (398)
|+|+++||++--.+-+ +++ .=||-.++. ....-.+||=-||--.-
T Consensus 219 k~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPm 263 (283)
T COG0190 219 KPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPM 263 (283)
T ss_pred cCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHH
Confidence 8999999998744322 444 446643321 22234688887775443
No 165
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.73 E-value=0.00097 Score=65.28 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=106.3
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++.+....++ ..+++|+.+.+. + ..|++++..+ ..+++ +++++.+-. |=|- |+....+..
T Consensus 57 a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~ 129 (294)
T PRK14187 57 AEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KDVD----GFHNENVGR 129 (294)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence 445688877665443 357777766553 2 3689999765 34554 344444332 3221 111111111
Q ss_pred hhhcCceEEecC-CCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 105 ~~~~gI~V~n~p-~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
...+.. ......+|.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 130 ------l~~g~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~ 178 (294)
T PRK14187 130 ------LFTGQKKNCLIPCTPKGCLYLI----K---------------------TITRNLSGSDAVVIGRSNIVGKPMAC 178 (294)
T ss_pred ------HhCCCCCCCccCcCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 111111 124455666555443 1 12357999999999995 57999999
Q ss_pred HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM 262 (398)
Q Consensus 183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m 262 (398)
.| ...++.|..+.... .++.+..++||+|+++++- .+++..+.+
T Consensus 179 lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADIvVsAvGk----p~~i~~~~i--- 222 (294)
T PRK14187 179 LL-LGENCTVTTVHSAT----------------------------RDLADYCSKADILVAAVGI----PNFVKYSWI--- 222 (294)
T ss_pred HH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence 98 68899998875422 3688899999999999985 556776554
Q ss_pred CCCcEEEEcCCCc
Q 015895 263 KKEAILVNCSRGP 275 (398)
Q Consensus 263 k~gailIN~aRG~ 275 (398)
|+|+++||++-..
T Consensus 223 k~gaiVIDVGin~ 235 (294)
T PRK14187 223 KKGAIVIDVGINS 235 (294)
T ss_pred CCCCEEEEecccc
Confidence 6999999997643
No 166
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00052 Score=67.66 Aligned_cols=134 Identities=13% Similarity=0.212 Sum_probs=92.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~l~~ 244 (398)
++|||||+|++|+-.|+.+ -..|..|+.+||..-...+. ..| ....+.+.+++ +..|+|.+|+
T Consensus 53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~----------~yg-----~~~ft~lhdlcerhpDvvLlct 116 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE----------KYG-----SAKFTLLHDLCERHPDVVLLCT 116 (480)
T ss_pred eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH----------Hhc-----ccccccHHHHHhcCCCEEEEEe
Confidence 4699999999999999998 68899999999876332211 112 22345667765 6799999998
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC-----CCCCCCCCCceEEcC
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----MKPGLSEMKNAIVVP 319 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~-----~~~~L~~~~nvilTP 319 (398)
.. ..+..++-.--++++|.|+++++.-.-....-.++.+-|-+. .|....-|. .++....+|=|+.-=
T Consensus 117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv 189 (480)
T KOG2380|consen 117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV 189 (480)
T ss_pred hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence 64 345555544567889999999999888877777777777654 233333332 123455677666654
Q ss_pred CCC
Q 015895 320 HIA 322 (398)
Q Consensus 320 Hia 322 (398)
.++
T Consensus 190 Rig 192 (480)
T KOG2380|consen 190 RIG 192 (480)
T ss_pred ecc
Confidence 444
No 167
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.68 E-value=0.0019 Score=63.22 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=105.6
Q ss_pred HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895 32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN 103 (398)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~ 103 (398)
..++.|.+++....++ ..+++|+.+.+.. ..|++++..+ ..+++ ++++..+-. |=|- |+..+.+.
T Consensus 55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g 127 (293)
T PRK14185 55 ACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINVG 127 (293)
T ss_pred HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhHH
Confidence 3445688876655444 3577887765531 4689999764 34443 344444332 3221 22212111
Q ss_pred HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
.. ..+.+ +....++.-++.++ + +.+.++.||++.|||-+ .+|+.+|.
T Consensus 128 ~l------~~~~~-~~~PcTp~av~~lL----~---------------------~~~i~l~GK~vvViGrS~iVGkPla~ 175 (293)
T PRK14185 128 RM------SIGLP-CFVSATPNGILELL----K---------------------RYHIETSGKKCVVLGRSNIVGKPMAQ 175 (293)
T ss_pred HH------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence 11 11222 24566666666554 1 12357999999999995 57999999
Q ss_pred HHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895 183 MMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (398)
Q Consensus 183 ~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~ 258 (398)
.| ..- ++.|..+.... .++.+..++||+|+++++- .++|..+
T Consensus 176 lL-~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~- 221 (293)
T PRK14185 176 LM-MQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADIIIAALGQ----PEFVKAD- 221 (293)
T ss_pred HH-HcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHH-
Confidence 88 444 78888764321 3688889999999999985 4567654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 015895 259 LATMKKEAILVNCSRGP 275 (398)
Q Consensus 259 ~~~mk~gailIN~aRG~ 275 (398)
..|+|+++||++--.
T Consensus 222 --~vk~gavVIDvGin~ 236 (293)
T PRK14185 222 --MVKEGAVVIDVGTTR 236 (293)
T ss_pred --HcCCCCEEEEecCcc
Confidence 457999999998643
No 168
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.67 E-value=0.0013 Score=68.76 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=89.1
Q ss_pred CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhc
Q 015895 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE 236 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sl~ell~~ 236 (398)
++|+|||+|.+|..+|-.|+. +.|.+|++||...... +.+... ....+.+ .. ........+.++.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE 78 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence 579999999999999998853 4579999999877542 221110 0000000 00 0001122457788899
Q ss_pred CCEEEEccCCChh-----------hhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec-cCCCC
Q 015895 237 ADVISLHPVLDKT-----------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE 302 (398)
Q Consensus 237 aDiV~l~~Plt~~-----------T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD-V~~~E 302 (398)
||++++|+|.... ...+. -++.-..+++|.++|.-|.-.+=-++.+...+.+.. .|.-.. +|.+|
T Consensus 79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE 157 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE 157 (473)
T ss_pred CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence 9999999863221 11222 234556679999999999977666677777777521 121112 24566
Q ss_pred CCCC----CCCCCCCceEE
Q 015895 303 PYMK----PGLSEMKNAIV 317 (398)
Q Consensus 303 P~~~----~~L~~~~nvil 317 (398)
=+.. ..++..|+||+
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 4421 24677777764
No 169
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.0021 Score=63.00 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=104.5
Q ss_pred HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895 33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA 104 (398)
Q Consensus 33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~ 104 (398)
.++.|++++....++ ..+++|+.+.+.. +.|++++..+ ..+++. +++..+-. |=|- |+..+.+..
T Consensus 58 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~ 130 (297)
T PRK14168 58 AHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KDVD----GFHPVNVGR 130 (297)
T ss_pred HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhHHH
Confidence 345688876655443 3578887766542 4689999865 344433 44443322 2221 111111111
Q ss_pred hhhcCceEEecC-CCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895 105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR 182 (398)
Q Consensus 105 ~~~~gI~V~n~p-~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~ 182 (398)
...+.. ......++.-++.++- +.+.++.||++.|||-+ .+|+.+|.
T Consensus 131 ------l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla~ 179 (297)
T PRK14168 131 ------LMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPIAN 179 (297)
T ss_pred ------HhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHHHH
Confidence 111111 2345556665555441 12468999999999985 57999999
Q ss_pred HHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895 183 MMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (398)
Q Consensus 183 ~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~ 258 (398)
.| ..- ++.|..+.... .++.+..++||+|++++.- .++|..+.
T Consensus 180 lL-~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvVsAvGk----p~~i~~~~ 226 (297)
T PRK14168 180 MM-TQKGPGANATVTIVHTRS----------------------------KNLARHCQRADILIVAAGV----PNLVKPEW 226 (297)
T ss_pred HH-HhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 88 444 78888764321 3688889999999999964 45676654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 015895 259 LATMKKEAILVNCSRGP 275 (398)
Q Consensus 259 ~~~mk~gailIN~aRG~ 275 (398)
.|+|+++||++.-.
T Consensus 227 ---ik~gavVIDvGin~ 240 (297)
T PRK14168 227 ---IKPGATVIDVGVNR 240 (297)
T ss_pred ---cCCCCEEEecCCCc
Confidence 47999999998644
No 170
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.63 E-value=0.00061 Score=66.36 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=77.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|+|||.|.||+.+|..|+ ..|.+|..++++.+. .+...+. +-... .+..........+.+++ +.+|+|++++|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence 47999999999999999984 678999999986543 2221110 00000 01000001123456665 89999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEE--eccCCCCC
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEDEP 303 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAa--lDV~~~EP 303 (398)
. .++..++ +.....+.+++.+|.+.-| +-.++.+.+.+....+.++. ..++..+|
T Consensus 76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p 132 (304)
T PRK06522 76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP 132 (304)
T ss_pred c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence 5 3455544 3344456778888888776 33355666666655554432 23344455
No 171
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.62 E-value=0.00024 Score=70.06 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
...++++|||.|.+|+..++.++..++ -+|.+|+|++.. .+.+.+.+ ...+ .... ..+.++++++||+|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence 456799999999999999998744456 479999998754 23333222 1111 1111 367899999999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
.++|.+ .-+|.. .+|||+.++.++.-
T Consensus 194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 194 TATTSR---TPVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred EccCCC---CceeCc----cCCCCCEEEecCCC
Confidence 999953 466654 26999999999853
No 172
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.61 E-value=0.00066 Score=62.19 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=64.8
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhc
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE 236 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~sl~ell~~ 236 (398)
..++++++.|+|. |.+|+.+++.+ ...|.+|..++|+... .+.+.+.+.. ..+. .... ....++.+.+++
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRA---RFGE-GVGAVETSDDAARAAAIKG 97 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHh---hcCC-cEEEeeCCCHHHHHHHHhc
Confidence 4688999999995 99999999998 4678899999987643 2222221100 0010 0100 111234577889
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v 277 (398)
+|+|+.+.|....+ .+. .-...+++.+++|+.+...+
T Consensus 98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence 99999999864321 111 11123456777777776543
No 173
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.59 E-value=0.00045 Score=69.32 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
|..+|++| ...|.+|++||++.....+...+. +...| .....+..+++++||+|++++|....++.++ .
T Consensus 32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~ 100 (342)
T PRK12557 32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K 100 (342)
T ss_pred HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence 78999998 467999999999875311100110 11222 2234577888999999999999655477777 4
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH-HHHHHHHh
Q 015895 257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK 287 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde-~aL~~aL~ 287 (398)
+....+++|.++||++.++.... +.+.+.+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 67788999999999999987665 56666664
No 174
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.53 E-value=0.00031 Score=70.19 Aligned_cols=102 Identities=28% Similarity=0.372 Sum_probs=71.0
Q ss_pred cccccCCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (398)
Q Consensus 159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~ 236 (398)
.|.++.||++.|+|. |.||+.+++.|+...| .+++.++|+... ...+...+ . .....++++.+.+
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~ 215 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPE 215 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHcc
Confidence 345799999999999 8999999999843455 489999987543 22211111 0 0112468899999
Q ss_pred CCEEEEccCCChhhhh-hccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895 237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE 279 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~-li~~~~~~~mk~gailIN~aRG~~vde 279 (398)
+|+|+.+.-. ... .++.+.+ +++.++||.|+..=||.
T Consensus 216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence 9999877643 234 3777644 89999999999875653
No 175
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.52 E-value=0.002 Score=70.53 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=83.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~sl~ell 234 (398)
++|+|||.|.||+.+|..++...|++|+.||+++...... .. +.+.. ..+.+... .......+++ .+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence 5799999999999999986434799999999987542111 00 01110 11111100 0112234564 57
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~ 300 (398)
+.||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+ +.-.+|.++++.- =.-.++--|.
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~~g~Hffn 445 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRP-ENVIGLHYFS 445 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence 8999999999988888887778888889999888765554 3445666766542 2345565553
No 176
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.51 E-value=0.00053 Score=63.10 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=66.7
Q ss_pred CcccccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 015895 156 NLFVGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL 234 (398)
Q Consensus 156 ~~~~g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell 234 (398)
....|.++.||++.|||-+. +|+.+|..| ..-|+.|..+|.+.-..... . ...+... .+. -....++.+.+
T Consensus 53 ~~~~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~~~---~--~~~~hs~-t~~-~~~~~~l~~~~ 124 (197)
T cd01079 53 ILPYGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVFTR---G--ESIRHEK-HHV-TDEEAMTLDCL 124 (197)
T ss_pred ccccCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCccccccc---c--ccccccc-ccc-cchhhHHHHHh
Confidence 33457799999999999965 699999988 57899999997532110000 0 0000000 000 00001277899
Q ss_pred hcCCEEEEccCCChhhhhh-ccHHHHhcCCCCcEEEEcCC
Q 015895 235 READVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR 273 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~l-i~~~~~~~mk~gailIN~aR 273 (398)
++||+|+++++- .++ |..+. .|+|+++||++-
T Consensus 125 ~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 125 SQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred hhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence 999999999985 444 66544 479999999984
No 177
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.51 E-value=0.0021 Score=70.57 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=85.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~ 235 (398)
++|+|||.|.||..+|..++...|++|..||++...... ......-....+.+... .......++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 679999999999999998743679999999998754211 11111000011111100 011223455 4569
Q ss_pred cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895 236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300 (398)
Q Consensus 236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~ 300 (398)
.||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+ +.-..|.+.++.- =..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecCC
Confidence 999999999988888877777777889999999776655 4456677766542 2446666663
No 178
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.50 E-value=0.0016 Score=71.78 Aligned_cols=146 Identities=18% Similarity=0.173 Sum_probs=93.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~sl~ell 234 (398)
++|+|||.|.||..+|..++ ..|++|+.||++....... .. +.+.... ..+... .......+++ .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~-~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKV-KRKKITSLERDSILSNLTPTLDYS-GF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999875 6699999999987642111 11 1111111 111100 0112234565 46
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n 314 (398)
++||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+ ++-.+|.+.++.- =.-.++.-|. |....||.+
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~--P~~~m~LvE--- 484 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFS--PVDKMQLLE--- 484 (737)
T ss_pred ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccC--CcccCceEE---
Confidence 9999999999988888887878888889999988654443 4556777777643 2456666664 222223443
Q ss_pred eEEcCCCC
Q 015895 315 AIVVPHIA 322 (398)
Q Consensus 315 vilTPHia 322 (398)
|+-+|+.+
T Consensus 485 vv~g~~Ts 492 (737)
T TIGR02441 485 IITHDGTS 492 (737)
T ss_pred EeCCCCCC
Confidence 56666554
No 179
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.48 E-value=0.0024 Score=70.10 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=91.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~sl~ell 234 (398)
++|+|||.|.||..+|..++ ..|++|+.||++...... ...+ .+. ...+.+... .......++++ +
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~-~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLN-KQVERGKIDGAKMAGVLSSIRPTLDYAG-F 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHH-HHHHcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence 68999999999999999875 679999999998764211 1111 111 011111110 01122345644 6
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n 314 (398)
+.||+|+=++|-+.+.+.-+-++.=+.++++++|-..+.+ +.-..|.++++.. =.-.++--|. |+...||.+
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff~--P~~~~~lVE--- 462 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFFN--PVHRMPLVE--- 462 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecCC--cccccceEE---
Confidence 9999999999988888888878888889999998766554 3446677777542 2345555553 222223433
Q ss_pred eEEcCCCC
Q 015895 315 AIVVPHIA 322 (398)
Q Consensus 315 vilTPHia 322 (398)
|+-.||.+
T Consensus 463 vv~g~~T~ 470 (715)
T PRK11730 463 VIRGEKTS 470 (715)
T ss_pred eeCCCCCC
Confidence 55555544
No 180
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.48 E-value=0.00078 Score=67.61 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=66.5
Q ss_pred eEEEEecChhHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHh
Q 015895 167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL 234 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~-~------fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell 234 (398)
+|+|||.|+.|.++|..++. + |+.+|..|.+.. .....+....-....+.. +. .+.......++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 48999999999999998854 2 448999998732 111111111000000000 10 011122235799999
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v 277 (398)
+.||+|++++|. ...+.++ ++.-..++++..+|+++-|=-.
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence 999999999994 3344443 4444567889999999887433
No 181
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.42 E-value=0.00079 Score=67.04 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
..++++|||.|.+|+..++.++...+. +|.+|||++... +.+.+.+ .... +.....+.++++++++||+|++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT 198 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence 467899999999999988776434554 799999987542 3322221 1110 1112235678999999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
++|.. .-++. +.+|+|+.++.++.-
T Consensus 199 aT~s~---~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 199 VTNAK---TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence 99954 34443 566999999998763
No 182
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.41 E-value=0.0012 Score=62.41 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=68.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcC----------ChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 229 (398)
.+++|+++.|.|+|++|+.+|+.| ..+|++|++ .|. +.. ++..+.+..+. +. . .+ ... ..+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~-~l~~~~~~~g~-l~--~-~~-~~~-~~~ 98 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVP-ALLAYKKEHGS-VL--G-FP-GAE-RIT 98 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHH-HHHHHHHhcCC-cc--c-CC-Cce-ecC
Confidence 468999999999999999999998 689999994 444 222 22111111100 00 0 00 000 112
Q ss_pred HHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 230 MDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 230 l~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
.+++ -.+||+++-|.+ .+.|+.+...+++ =.+++-.+-+.+ . ..-.+.|++..+.
T Consensus 99 ~~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~ 154 (227)
T cd01076 99 NEELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL 154 (227)
T ss_pred CccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence 2232 247899988876 4567777777777 335555555555 3 4455667666553
No 183
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.41 E-value=0.00047 Score=67.10 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.++++.|+|.|.+|+.+++.| ...| .+|.+++|+.... +.+.+.+. ... ...+ ..++.+.+..+|+|
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div 189 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFDLI 189 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence 58899999999999999999998 5889 7999999987542 22222111 000 0111 11345667889999
Q ss_pred EEccCCC
Q 015895 241 SLHPVLD 247 (398)
Q Consensus 241 ~l~~Plt 247 (398)
+.++|..
T Consensus 190 InaTp~g 196 (278)
T PRK00258 190 INATSAG 196 (278)
T ss_pred EECCcCC
Confidence 9999964
No 184
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.40 E-value=0.0012 Score=66.88 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCeEEEEecChhHHHHHHHHHhc------CCcEEEEEcCChhh----HHHHHHhhhhhhhhhc-C-CCCccccccCCHHH
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVTAYGQFLKAN-G-EQPVTWKRASSMDE 232 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~------fG~~V~~~d~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~sl~e 232 (398)
.++|+|||.|+.|.++|..++.. ||.+|..|.++..- ..+...+ ........ + ..+.......++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-KHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-cCCCcccCCCCcCCCceEEecCHHH
Confidence 35899999999999999998643 45788888776531 1111100 00000000 0 01111222457889
Q ss_pred HhhcCCEEEEccCCChhhhhhccHHHHh--cCCCCcEEEEcCCCchhc
Q 015895 233 VLREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID 278 (398)
Q Consensus 233 ll~~aDiV~l~~Plt~~T~~li~~~~~~--~mk~gailIN~aRG~~vd 278 (398)
+++.||+|++++|- ...+.++ ++.-. .+++++++|+++-|=-.+
T Consensus 90 av~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 99999999999994 3344443 22223 466788999998874433
No 185
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.39 E-value=0.00084 Score=66.63 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=68.0
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
-++++|||.|..++.-++.+...+. -+|.+|+|++... +.+.+. ++..+ ..+..+.+.+++++.||+|+.+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQALG---FAVNTTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence 4689999999999999987754444 3899999998653 222221 22211 2233357899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+| .+.-+|+.+. +|+|+.++.++.
T Consensus 200 T~---s~~P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 200 TP---SREPLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred cC---CCCceeCHHH---cCCCcEEEecCC
Confidence 87 4457776654 579999999874
No 186
>PRK06046 alanine dehydrogenase; Validated
Probab=97.39 E-value=0.00078 Score=67.11 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
-+++||||.|.+|+..++.++...+. +|.+||++.... +.+.+.+ .+. .+..+..+.+++++++ +|+|+++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~----~~~--~~~~v~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERM----SSV--VGCDVTVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence 35899999999999999887534454 678899987542 2222221 110 0111233467899887 9999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+|. +.-++..+. +|+|+.+..++.
T Consensus 201 Tps---~~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 201 TPS---RKPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred cCC---CCcEecHHH---cCCCCEEEecCC
Confidence 995 346676654 489999888874
No 187
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.38 E-value=0.0011 Score=65.52 Aligned_cols=109 Identities=19% Similarity=0.243 Sum_probs=70.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|.|||.|.-|.++|+.++ .-|.+|..|.+++....+ ..+. -+...-..-..+.......+++++++.||+|++.+
T Consensus 2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~-i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av 79 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAE-INETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV 79 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHH-HHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence 57999999999999999984 667889989887643211 1110 00000000111222333468999999999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd 278 (398)
|. ...+..+. +.-..+++++.+|+++-|=-.+
T Consensus 80 Ps-~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 80 PS-QALREVLR-QLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred Ch-HHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence 94 34444432 2335678999999999875443
No 188
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.37 E-value=0.00049 Score=66.98 Aligned_cols=91 Identities=27% Similarity=0.319 Sum_probs=64.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
-|.||||+|||||+=|.+=|..| +..|.+|++=-+..+..-+. ... .++. +.+.+|+.++||+|.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~-----dGf~-V~~v~ea~k~ADvim 79 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKE-----DGFK-VYTVEEAAKRADVVM 79 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHh-----cCCE-eecHHHHhhcCCEEE
Confidence 58999999999999999999998 78898876544433221111 111 2232 468999999999999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEE
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAIL 268 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gail 268 (398)
+.+|.. .-..++..+.-..||+|+.|
T Consensus 80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 80 ILLPDE-QQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence 999963 33455556677778888743
No 189
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.35 E-value=0.0012 Score=61.17 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=69.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK- 225 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~- 225 (398)
..|..++|+|+|+|.+|+.+|+.|+ ..|. ++..+|++ .+...++ + .+.....+.+.... ..+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-~~i~~ 94 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-TEIEA 94 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC-CEEEE
Confidence 4588899999999999999999985 6787 69999987 2111000 0 00001111111100 0111
Q ss_pred -----ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 226 -----~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
....++++++++|+|+-+ ..+.+++.++..+....++...++..
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 112356778899999999 57789999999988888887666664
No 190
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.34 E-value=0.0077 Score=60.74 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=115.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l 242 (398)
..||+||+|-||+.+|..+ ...|.+|.+|+|+.+... .+.+. .+.. .......+++|+ ++.=--|.+
T Consensus 4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~ktd-~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKTD-EFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHHH-HHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence 4699999999999999998 589999999999987532 23221 1100 012233567766 455566766
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia 322 (398)
.+-...-....| ++.+..|.+|-++||-+-..--|+..-.++|....|...+.-|...|--. +.. |.+ +-
T Consensus 74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA---~~G-PSi-----Mp 143 (473)
T COG0362 74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA---RHG-PSI-----MP 143 (473)
T ss_pred EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc---ccC-CCc-----CC
Confidence 665422123333 56888899999999999999999999999999999999999999888531 222 322 33
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 015895 323 SASKWTREGMATLAALNVLGKIKGYPIWG 351 (398)
Q Consensus 323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~ 351 (398)
|.+.++.+.+.-+ .+.|.+-..|+|.-.
T Consensus 144 GG~~eay~~v~pi-l~~IaAk~~g~pCc~ 171 (473)
T COG0362 144 GGQKEAYELVAPI-LTKIAAKVDGEPCCT 171 (473)
T ss_pred CCCHHHHHHHHHH-HHHHHhhcCCCCcee
Confidence 6678888877655 466777677877543
No 191
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.33 E-value=0.00067 Score=67.21 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=59.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
+++||||.|..|+.-++.++.-++. +|.+|+|++.. .+.+.+. +.. ....+..+.+.+++++.||+|+.++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence 4899999999999999877555664 89999998754 2333322 222 1233445678999999999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV 276 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~ 276 (398)
|.+..+ -+++.+ .+|+|+.++.++....
T Consensus 201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence 864432 566544 5789999999987543
No 192
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.33 E-value=0.005 Score=67.65 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=90.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCC--------CccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQ--------PVTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~--------~~~~~~~~sl~ell 234 (398)
++|+|||.|.||..+|..++ ..|++|+.||++...... .... .+....+ .+.. ........+++ .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSYA-GF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence 57999999999999999885 679999999998765221 1111 1111111 1100 00112234554 46
Q ss_pred hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895 235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n 314 (398)
+.||+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+ ++-.+|..+++.- =.-.++=-|. |...-||.+
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p-~r~ig~Hff~--P~~~~~lvE--- 462 (714)
T TIGR02437 391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRP-ENFCGMHFFN--PVHRMPLVE--- 462 (714)
T ss_pred cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCc-ccEEEEecCC--CcccCceEe---
Confidence 9999999999988888877777777889999998766554 4456677776542 2334444443 222233443
Q ss_pred eEEcCCCC
Q 015895 315 AIVVPHIA 322 (398)
Q Consensus 315 vilTPHia 322 (398)
|+-+++.+
T Consensus 463 vv~g~~Ts 470 (714)
T TIGR02437 463 VIRGEKSS 470 (714)
T ss_pred ecCCCCCC
Confidence 55555544
No 193
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.0012 Score=66.23 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=64.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CC--CccccccCCHHHHhhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQ--PVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~sl~ell~~aDiV~l 242 (398)
++|+|||.|.+|..+|..|+ ..| +|..|.+++.. .+...+. .......+ .. +.......++++.++.+|+|++
T Consensus 8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~-~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil 83 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDN-HRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM 83 (341)
T ss_pred CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhc-CCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence 57999999999999999985 556 57778766533 2211110 00000000 00 1111223578888899999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
++|. ..++..+ ++.-..++++..+|++.-|=
T Consensus 84 avps-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 84 GVPS-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EeCH-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 9993 4455554 33445578888999998863
No 194
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.30 E-value=0.0017 Score=64.44 Aligned_cols=105 Identities=25% Similarity=0.316 Sum_probs=63.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHh-hcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell-~~aDiV~l 242 (398)
++|+|||.|.||..+|..| ...|.+|..|+|+... .+..... ....... +. .+.......++++.+ ..+|+|++
T Consensus 1 MkI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence 3699999999999999998 4678999999997642 2211110 0000000 00 011111234667766 58999999
Q ss_pred ccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCc
Q 015895 243 HPVLDKTTYHLINKERLA-TMKKEAILVNCSRGP 275 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~ 275 (398)
++|. .++..++. +... .++++..+|.+.-|-
T Consensus 78 avks-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 AVPT-QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EeCH-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 9994 44555543 2333 567777777776663
No 195
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.28 E-value=0.0014 Score=65.21 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
..++++|||.|.+|+..++.++..++ -+|.+|+|+.... +.+.+.+ ... ....+....++++.+++||+|+.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt 200 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT 200 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence 35789999999999999998743466 4799999987642 2222221 111 01122334678999999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
++|.+ .-+|..+. +|+|+.+..++
T Consensus 201 aT~s~---~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 201 TTPSE---TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred ecCCC---CcEecHHH---cCCCcEEEeeC
Confidence 99853 45666543 68998887765
No 196
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.27 E-value=0.0009 Score=62.34 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=64.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~aDi 239 (398)
.++.|+++.|||.|.+|..-++.| ..+|++|.+++|...+....+.+ .+ ...+.. ... .+.+..+|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence 468999999999999999999998 58999999999987655443211 11 111211 112 345688999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
|+.++.. ++ +|......++...++||++
T Consensus 73 Vi~at~d-~~----ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 73 VIAATDD-EE----LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEECCCC-HH----HHHHHHHHHHHcCCEEEEC
Confidence 8888664 22 3445555566666777754
No 197
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.25 E-value=0.0033 Score=60.54 Aligned_cols=127 Identities=19% Similarity=0.116 Sum_probs=70.8
Q ss_pred HHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895 180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (398)
Q Consensus 180 vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~ 258 (398)
+|+.|+ +++..+|++||+++...... ...|.. .....+ .+.+++||+|++|+|. ..+..++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~---~~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~ 65 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGII---DEASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI 65 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSS---SEEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCe---eeccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence 355552 24458999999998753221 112221 122223 5678999999999995 3455554 556
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec-cCCCCCC----CCCCCCCCCceEEcCCCC
Q 015895 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDEPY----MKPGLSEMKNAIVVPHIA 322 (398)
Q Consensus 259 ~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD-V~~~EP~----~~~~L~~~~nvilTPHia 322 (398)
...+++|++++|++.-.---.+++.+.+..+ ....+.= -|.+|-. ....|+.-.++++||+-.
T Consensus 66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 6679999999999886654445555555522 2222221 2333321 123688888999999865
No 198
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.22 E-value=0.0037 Score=62.11 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=73.5
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+..++|+|||.|.||..+|..++ ..| .++..||...........+.... ....+ .........+.+ .+++||+|+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~-~~~~i~~~~d~~-~l~~ADiVV 78 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHF-STLVG-SNINILGTNNYE-DIKDSDVVV 78 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhh-ccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence 45679999999999999998863 445 68999998764321111111100 00011 111122224666 679999999
Q ss_pred Ecc--CCCh-hhh--------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--cCCccEEE--ec
Q 015895 242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD 297 (398)
Q Consensus 242 l~~--Plt~-~T~--------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gAa--lD 297 (398)
++. |..+ .++ .++- .+.+....|.+++|+++-..-+-...+.+.-. ..++.|.+ ||
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 998 4433 111 1110 12344456788999986543333334444322 35666655 66
No 199
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.20 E-value=0.0019 Score=64.95 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
-++++|||.|..++.-++.+..-+.. +|.+|+|++... +.+.+. +... ...+..+.++++++++||+|+.+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAGP---GLRIVACRSVAEAVEGADIITTV 200 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHhc---CCcEEEeCCHHHHHhcCCEEEEe
Confidence 36899999999999988766545554 799999997642 222222 2211 12233457899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+|.+ +..-+|..+ .+|+|+.++-++
T Consensus 201 T~S~-~~~Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 201 TADK-TNATILTDD---MVEPGMHINAVG 225 (346)
T ss_pred cCCC-CCCceecHH---HcCCCcEEEecC
Confidence 9742 222456554 458999877765
No 200
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.19 E-value=0.0017 Score=64.06 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
-+++||||.|..|+.-++.++.-+.. +|.+|+|++... +.+.+. +.+.. ...+..+.+++++++.||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~----~~~~~--~~~v~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAER----FSKEF--GVDIRPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence 46899999999999988877544554 799999998653 233222 22111 12233457899999999999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+|. +.-+|..+. +|||+.++-++.
T Consensus 190 T~s---~~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 190 TNS---DTPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred cCC---CCcEecHHH---cCCCceEEecCC
Confidence 984 457776654 478877776654
No 201
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.19 E-value=0.00069 Score=55.98 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=58.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
.++|+++.|||.|.+|..=++.| ...|++|.++++.. ...++ ...+.. ..+++-+..+|+|+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~~-~~~~~~l~~~~lV~ 65 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLIR-REFEEDLDGADLVF 65 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEEE-SS-GGGCTTESEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHHh-hhHHHHHhhheEEE
Confidence 58999999999999999999998 69999999999986 11111 011211 23445578899999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.+++. ++ +++.....++.--+++|++-
T Consensus 66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 66 AATDD-PE----LNEAIYADARARGILVNVVD 92 (103)
T ss_dssp E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred ecCCC-HH----HHHHHHHHHhhCCEEEEECC
Confidence 88874 22 44555566665667787653
No 202
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.18 E-value=0.0023 Score=61.93 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=69.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV 240 (398)
...+++++|+|.|.+|+.++..+ ...|.+|.+++|+..+. +.+.+.+ ...+. ....++++. +.++|+|
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~-----~~~~~~~~~~~~~~Div 182 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE-----IQAFSMDELPLHRVDLI 182 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc-----eEEechhhhcccCccEE
Confidence 35678999999999999999998 46789999999886542 2222211 11110 011233333 3579999
Q ss_pred EEccCCC--hhhhh-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 241 SLHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 241 ~l~~Plt--~~T~~-li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
+.++|.. ++... .+. .+.++++.+++|+.-... ++ .|.+..++.
T Consensus 183 Inatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~ 229 (270)
T TIGR00507 183 INATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL 229 (270)
T ss_pred EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence 9999974 11111 222 345678888888877654 33 455555543
No 203
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.18 E-value=0.0033 Score=62.10 Aligned_cols=128 Identities=15% Similarity=0.215 Sum_probs=73.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+|||.|.||..+|..++ ..|. +|+.+|...........+.+...... ..........+.++ +++||+|+++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~--~~~~~i~~t~d~~~-~~~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPVG--GFDTKVTGTNNYAD-TANSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhcc--CCCcEEEecCCHHH-hCCCCEEEEcC
Confidence 57999999999999999874 4443 89999986543221211221111100 00111222356777 78999999998
Q ss_pred CCChh---h--------hhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhcCCccEEE--ec
Q 015895 245 VLDKT---T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (398)
Q Consensus 245 Plt~~---T--------~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~a--L~~g~i~gAa--lD 297 (398)
+.... + ..++- .+.+....+++++|+++-.-=+-...+.+. +...++.|.+ ||
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 73211 1 12221 123444467889999877443334444444 4445666765 67
No 204
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.17 E-value=0.0021 Score=64.06 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=63.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
..++++|||.|.+|+..+..++...+ -+|.+|+|+... .+.+.+.+ ... ....+....++++++++||+|+.
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~----~~~--~g~~v~~~~d~~~al~~aDiVi~ 203 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADL----RAE--LGIPVTVARDVHEAVAGADIIVT 203 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----hhc--cCceEEEeCCHHHHHccCCEEEE
Confidence 35789999999999998887643355 479999998764 23322221 111 01122334688999999999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
++|.. .-+|..+. +++|+.+..+
T Consensus 204 aT~s~---~p~i~~~~---l~~g~~v~~v 226 (330)
T PRK08291 204 TTPSE---EPILKAEW---LHPGLHVTAM 226 (330)
T ss_pred eeCCC---CcEecHHH---cCCCceEEee
Confidence 99853 45665543 5778766554
No 205
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.15 E-value=0.0033 Score=62.11 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=75.1
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCc-cccccCCHHHHhhcCCEEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISL 242 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~sl~ell~~aDiV~l 242 (398)
.++|+|||.|.||..+|.+| ...|.+|.++.+........ .+-.+.. .+.... ......+.+ ....+|+|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil 78 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVRE----NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV 78 (313)
T ss_pred CcEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHHh----CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence 36899999999999999998 57799999998865332211 0000000 010000 011112333 3578999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal 296 (398)
+++.. ++...+ +..-..+++++.++...-| +-.++.|.+.+...++.++..
T Consensus 79 avK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~ 129 (313)
T PRK06249 79 GLKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC 129 (313)
T ss_pred EecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence 99853 444433 2334446778888887665 456777888887767666543
No 206
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.11 E-value=0.0022 Score=60.06 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=63.9
Q ss_pred CeEEEEecChhHHHHHHHHHhc-CCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~-fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|||||+|.||+.+.+.+..+ .+. .+.+||++.....+. .+ . .+.....+++|++++.|+|+=|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~---------~~-~---~~~~~~s~ide~~~~~DlvVEa 67 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL---------EA-S---VGRRCVSDIDELIAEVDLVVEA 67 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH---------Hh-h---cCCCccccHHHHhhccceeeee
Confidence 4799999999999999987323 223 478999987654321 00 0 1111236799999999999877
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a 281 (398)
... +..+ .-....+|.|.=+|=+|-|.+.|+.-
T Consensus 68 AS~-~Av~----e~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 68 ASP-EAVR----EYVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred CCH-HHHH----HHhHHHHhcCCCEEEEechhccChHH
Confidence 752 1222 22344566777777777888886543
No 207
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0031 Score=62.85 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=69.0
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++++|||.|..+..-++.+..-|+. +|.+|+|++... +++. .+++..+.. .+..+.+.+++++.||+|+.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEec
Confidence 5799999999999999887656665 799999988653 2222 223322221 1234678999999999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
|.++ -++..+.+ |+|+.+..++-
T Consensus 204 ~s~~---Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 204 PSTE---PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred CCCC---CeecHhhc---CCCcEEEecCC
Confidence 9654 66666554 59999998884
No 208
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.09 E-value=0.0046 Score=58.11 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=67.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl 230 (398)
.++.|+++.|.|||++|+.+|+.| ...|++|++ .|.+. ....+. .... .+..........+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~------~~~~~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVAL------GGSARVKVQDYFPG 90 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhh------CCccccCcccccCc
Confidence 468999999999999999999998 688886555 55543 022211 1100 01000000001111
Q ss_pred HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
++++ ..||+++-|.+ .+.|+.+....++ -.+++-.+-+++-+ .-.+.|++..
T Consensus 91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~G 143 (217)
T cd05211 91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERG 143 (217)
T ss_pred ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCC
Confidence 2332 48999998887 3477888888777 34666666766654 3345555544
No 209
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.09 E-value=0.0031 Score=64.13 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS 241 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl~ell~~aDiV~ 241 (398)
-+++||||.|..++.-++.++.-+. -+|.+|+|++... +.+.+. +.+... .. .+..+.+.+++++.||+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~----~~~~~~-~~~~v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATW----VAETYP-QITNVEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHH----HHHhcC-CCceEEEeCCHHHHHcCCCEEE
Confidence 3689999999999999988754453 4899999998643 222222 221100 01 1334578999999999999
Q ss_pred EccCCCh---hhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~Plt~---~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.+++.+. .+.-+|..+ .+|+|+.++.++.
T Consensus 229 taT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEecHH---HcCCCcEEecCCc
Confidence 9998543 344677655 4579998887665
No 210
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.08 E-value=0.0026 Score=59.15 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=60.1
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
-++.||++.|||.|.+|...++.| ...|++|++++|...+.+..+.+ .+ ...+....-.++.+..+|+|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV 74 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV 74 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence 479999999999999999999988 57899999999876554433211 11 11111111113446889999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+.++.. ++....| ...++.+ .++|++
T Consensus 75 iaaT~d-~elN~~i----~~~a~~~-~lvn~~ 100 (202)
T PRK06718 75 IAATND-PRVNEQV----KEDLPEN-ALFNVI 100 (202)
T ss_pred EEcCCC-HHHHHHH----HHHHHhC-CcEEEC
Confidence 988875 3333333 2223334 466764
No 211
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.08 E-value=0.0023 Score=63.62 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=67.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
.+|||||+|+||+.+++.+.+.-++++++ +|++....... . .+.....+.++++.+.|+|++|+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct 68 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM 68 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence 58999999999999999874334788775 68875332111 0 11222346777788999999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCC--chhcHHH-HHHHHhc-CCccE
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRG--PVIDEVA-LVEHLKQ-NPMFR 293 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG--~~vde~a-L~~aL~~-g~i~g 293 (398)
|.... -......++.|.-+|+..-- .+-+..+ |-++.+. |+++-
T Consensus 69 Ps~th-----~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv 116 (324)
T TIGR01921 69 GSATD-----IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV 116 (324)
T ss_pred CCccC-----HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 95332 13444556777777777432 1223333 5555553 55544
No 212
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.07 E-value=0.002 Score=54.67 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=53.5
Q ss_pred eEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 167 tvGIIG-lG~IG~~vA~~la~~fG~~V~~-~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
+|+||| .|.+|+.+.++|++...+++.. +.+..+. .... .+. ...+........ .+.++ +.++|+|++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~---~~~---~~~~~~~~~~~~-~~~~~-~~~~Dvvf~ 72 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE---VFP---HPKGFEDLSVED-ADPEE-LSDVDVVFL 72 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH---TTG---GGTTTEEEBEEE-TSGHH-HTTESEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh---hcc---ccccccceeEee-cchhH-hhcCCEEEe
Confidence 699999 9999999999997666777554 4444311 1111 100 000111111212 23344 599999999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
|+|.. .+..+. ... .++|..+|+.|.
T Consensus 73 a~~~~-~~~~~~-~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 73 ALPHG-ASKELA-PKL---LKAGIKVIDLSG 98 (121)
T ss_dssp -SCHH-HHHHHH-HHH---HHTTSEEEESSS
T ss_pred cCchh-HHHHHH-HHH---hhCCcEEEeCCH
Confidence 99942 222222 222 578889999875
No 213
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.05 E-value=0.013 Score=57.76 Aligned_cols=147 Identities=21% Similarity=0.233 Sum_probs=89.9
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhhhcCCCCc--------cccccCCHHHH
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPV--------TWKRASSMDEV 233 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~sl~el 233 (398)
-+++||||.|.||+.+|..++ .-|.+|..+|++........ .+.+.. ....+.... ......++. .
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k-~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEK-LVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHhhccccCchh-H
Confidence 478999999999999999975 35699999999954311110 111110 111111000 011122333 5
Q ss_pred hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCC
Q 015895 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK 313 (398)
Q Consensus 234 l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~ 313 (398)
++.||+|+=++|-+-+.++-+-++.=..++++++|=.-.++ +.-.++.++++.- =...++=-|.+- ++..+=
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rp-er~iG~HFfNP~-----~~m~LV 151 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRP-ERFIGLHFFNPV-----PLMPLV 151 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCc-hhEEEEeccCCC-----CcceeE
Confidence 78999999999988888877777777788999999544443 3346677777543 345666555432 233443
Q ss_pred ceEEcCCCC
Q 015895 314 NAIVVPHIA 322 (398)
Q Consensus 314 nvilTPHia 322 (398)
-||-+.+++
T Consensus 152 EvI~g~~T~ 160 (307)
T COG1250 152 EVIRGEKTS 160 (307)
T ss_pred EEecCCCCC
Confidence 466666554
No 214
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.03 E-value=0.0046 Score=59.67 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=63.0
Q ss_pred CeEEEEecChhHHHHHHHHHhc--CCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEG--FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~--fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV~ 241 (398)
++|||||+|.||+.+++.+..+ .+.++ .+|++.+.. .+.+. +. ...+.+++++ ..+.|+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV 67 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV 67 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence 5799999999999999987432 12544 446665422 22110 10 1234679996 58899999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc---HHHHHHHHhc
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd---e~aL~~aL~~ 288 (398)
=|..- + .+-+-.-..++.|.-++=.|-|.+-| ++.|.++.+.
T Consensus 68 E~A~~--~---av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 68 EAAGQ--Q---AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred ECCCH--H---HHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 87762 2 22222333455677777777788876 4445555554
No 215
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.03 E-value=0.0037 Score=64.34 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=62.6
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|+++.|||.|.||+.+|+.| ...|. ++++++|+... .+.+.+.+ +. .......++.+.+.++|+|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~-------~~--~~~~~~~~l~~~l~~aDiV 246 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAF-------RN--ASAHYLSELPQLIKKADII 246 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHh-------cC--CeEecHHHHHHHhccCCEE
Confidence 48899999999999999999998 57785 79999998653 23322222 10 0111224567788999999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+.|++. ...+|..+... .+.-++||.|=
T Consensus 247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav 274 (414)
T PRK13940 247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI 274 (414)
T ss_pred EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence 999974 23445544432 12235555543
No 216
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.01 E-value=0.0068 Score=51.76 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=60.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|+|+|+ |+||+.+++.+...-++++ .++|+..++...+ .. ..-.+..+.+.....++++++..+|+|+-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~---g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DV---GELAGIGPLGVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BC---HHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hh---hhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence 37999999 9999999999754478884 4567665221100 00 001122233444557899999999998755
Q ss_pred cCCChh-hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 244 PVLDKT-TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 244 ~Plt~~-T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
. +++ +...+ +.. ++.|.-+|-..+|---++.+.++.+.
T Consensus 75 T--~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 75 T--NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp S---HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred C--ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 5 233 22222 222 33477777777776444434444443
No 217
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.97 E-value=0.0039 Score=60.04 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=74.3
Q ss_pred EEEEec-ChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 168 vGIIGl-G~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
|+|||. |.+|..+|..++ ..| -++..||...........+ ....... . .........++.+.+++||+|++
T Consensus 1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~~~~d-l~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~ 76 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKGVAMD-LQDAVEP-L-ADIKVSITDDPYEAFKDADVVII 76 (263)
T ss_pred CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchHHHHH-HHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence 589999 999999999874 445 6899999876432111111 1000011 1 11223334567888999999998
Q ss_pred ccCC--Ch---------hhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEEE-eccCC
Q 015895 243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRVG-LDVFE 300 (398)
Q Consensus 243 ~~Pl--t~---------~T~~li~--~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gAa-lDV~~ 300 (398)
+.-. .+ ++..++. .+.+.+..+.+++||.+ .++|.-+ +.+. +...++.|.+ +|...
T Consensus 77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263)
T cd00650 77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence 6521 11 1111221 12344456899999996 4444443 4444 4567788888 88643
No 218
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.97 E-value=0.0021 Score=65.75 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=65.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.|+++++.|||.|.||.-+|+.| ...| .+|++.+|+..... .+.+.+ + ..+....++.+.+..+|+|
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~-~La~~~-------~---~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAE-ELAKKL-------G---AEAVALEELLEALAEADVV 242 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHH-HHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence 48999999999999999999998 5777 58899999886532 222211 2 1122345677789999999
Q ss_pred EEccCCChhhhhhccHHHHhcC---CCCcEEEEcCCCc
Q 015895 241 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP 275 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~m---k~gailIN~aRG~ 275 (398)
++++. ....+|..+.+... +++-++||.+=..
T Consensus 243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence 99875 33445554444332 1114667765443
No 219
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0047 Score=62.36 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=92.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh------hhh--h---hhhhcCCCCccccccCCHHHHh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT------AYG--Q---FLKANGEQPVTWKRASSMDEVL 234 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~------~~~--~---~~~~~~~~~~~~~~~~sl~ell 234 (398)
.+|||||||-||-.+|-.++ ..|.+|++||....... .... +.. . .....|. .....+.++ +
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g~----lraTtd~~~-l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESGK----LRATTDPEE-L 82 (436)
T ss_pred eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcCC----ceEecChhh-c
Confidence 68999999999999999874 77999999998875421 1100 000 0 0111111 111234444 4
Q ss_pred hcCCEEEEccCCChhhh-------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc-cEEEecc---CCC
Q 015895 235 READVISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM-FRVGLDV---FED 301 (398)
Q Consensus 235 ~~aDiV~l~~Plt~~T~-------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~gAalDV---~~~ 301 (398)
+.||++++|+|. |-+. -+.+ +..-..+|+|.++|==|+-.+--++.++..+-+..- ....-|. |.+
T Consensus 83 ~~~dv~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 83 KECDVFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred ccCCEEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 699999999884 4322 1222 234566899999999888777778887777665310 1122464 345
Q ss_pred CCC-CCC---CCCCCCceEEcCCCCCCcHHHHH
Q 015895 302 EPY-MKP---GLSEMKNAIVVPHIASASKWTRE 330 (398)
Q Consensus 302 EP~-~~~---~L~~~~nvilTPHia~~T~ea~~ 330 (398)
|-. |.+ .+...|+| +||.|.+..+
T Consensus 162 ERv~PG~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred cccCCCchhhhhhcCCce-----eecCCHHHHH
Confidence 532 222 35566776 5777765543
No 220
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.83 E-value=0.0039 Score=62.33 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=59.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|+++.|||.|.||+.+|+.| ...|. +|++.+|+.... .+.+ .....-+...++|+|
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~~~~-----------------~~~~~~~~~~~~DvV 230 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--PYRT-----------------VVREELSFQDPYDVI 230 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--chhh-----------------hhhhhhhcccCCCEE
Confidence 58999999999999999999998 67884 699999886320 0000 000111445789999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
+.+..-|....-.+..+.+...++ -++||.|=..
T Consensus 231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR 264 (338)
T PRK00676 231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR 264 (338)
T ss_pred EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence 987432333334455555554333 3777776544
No 221
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.74 E-value=0.0093 Score=61.77 Aligned_cols=120 Identities=11% Similarity=0.095 Sum_probs=70.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-c----------CChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 229 (398)
.++.|+||.|.|+|++|+.+|+.| ..+|++|++. | ..... +..+.+.....+...... .+.. ..+
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~~~-~~~~-~i~ 303 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYAEE-FGAE-YLE 303 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhhhh-cCCe-ecC
Confidence 479999999999999999999998 6899999988 5 22221 111111000001000000 0001 123
Q ss_pred HHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 230 MDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 230 l~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
.++++ ..|||++-|.. .+.|+.+....++ +-.+++-.|-|.+ ..+ -.+.|.+..|
T Consensus 304 ~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI 361 (445)
T PRK09414 304 GGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGV 361 (445)
T ss_pred CccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCc
Confidence 34444 37999997775 5667777666663 2346667777776 333 4456666554
No 222
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.73 E-value=0.0084 Score=49.98 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=63.7
Q ss_pred eEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895 167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l 242 (398)
++||||+|.+|+...+.+... -+.++. ++|+++... +.+.+. .+ ...+.+++++++ +.|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~-------~~-----~~~~~~~~~ll~~~~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEK-------YG-----IPVYTDLEELLADEDVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHH-------TT-----SEEESSHHHHHHHTTESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHH-------hc-----ccchhHHHHHHHhhcCCEEEE
Confidence 699999999999998776433 366764 788887542 222111 12 224578999998 7899999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhcCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~-aRG~~vde~aL~~aL~~g~ 290 (398)
++|.... .-+-...++.=+ .+++.- ---.+-+.++|.++.++.+
T Consensus 69 ~tp~~~h--~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 69 ATPPSSH--AEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp ESSGGGH--HHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred ecCCcch--HHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 9995322 212222333212 344442 1124455566776666544
No 223
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0063 Score=61.87 Aligned_cols=111 Identities=18% Similarity=0.090 Sum_probs=69.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|.|||.|.||+.+|..|+ .-| .+|++-||+.....+- .+.....+ ....+.......+.+++++.|+|+.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~~v---~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGGKV---EALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccccc---eeEEecccChHHHHHHHhcCCEEEEeC
Confidence 67999999999999999986 455 8999999997653221 11100000 011111122345789999999999999
Q ss_pred CCChhhhhhccHHHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 245 Plt~~T~~li~~~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|..- + ...+ +.++.|.-.++++-....- -++-+..++
T Consensus 77 p~~~---~---~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~ 114 (389)
T COG1748 77 PPFV---D---LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK 114 (389)
T ss_pred Cchh---h---HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence 9532 2 2333 5567888888887755432 334433333
No 224
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.68 E-value=0.008 Score=58.16 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=59.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|||||+|+||+.+++.+.+.-++++. ++++..... ... . .+ .+.....+++++-.+.|+|+.|
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---~-------~~---~~~~~~~d~~~l~~~~DvVve~ 68 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---A-------LG---EAVRVVSSVDALPQRPDLVVEC 68 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---h-------hc---cCCeeeCCHHHhccCCCEEEEC
Confidence 4799999999999999987432245543 334332211 111 0 00 0122346788875569999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP 290 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~ 290 (398)
.|.... . +-....++.|.-++-.+-|.+.|. +.|.++.+++.
T Consensus 69 t~~~~~-~----e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265)
T PRK13303 69 AGHAAL-K----EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265)
T ss_pred CCHHHH-H----HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence 984322 1 223333445555555555544443 44666665544
No 225
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.68 E-value=0.012 Score=56.53 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=45.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|+|+|+ |+||+.+++.+...-++++.+ +|+....... . ...+.....+++++++.+|+|+.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~ 67 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF 67 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence 47999998 999999999874334687665 7766532110 0 111222346899999899999977
Q ss_pred cC
Q 015895 244 PV 245 (398)
Q Consensus 244 ~P 245 (398)
+|
T Consensus 68 t~ 69 (257)
T PRK00048 68 TT 69 (257)
T ss_pred CC
Confidence 76
No 226
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.65 E-value=0.0079 Score=58.80 Aligned_cols=78 Identities=19% Similarity=0.164 Sum_probs=52.4
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.++++.|||.|.+|++++..| ...|+ +|.++||+.... +.+.+.+ ..... ........++.+.++++|+|
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l----~~~~~-~~~~~~~~~~~~~~~~aDiV 196 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADEL----NARFP-AARATAGSDLAAALAAADGL 196 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHH----HhhCC-CeEEEeccchHhhhCCCCEE
Confidence 46789999999999999999998 57887 799999987542 2222211 11000 01111123456677889999
Q ss_pred EEccCC
Q 015895 241 SLHPVL 246 (398)
Q Consensus 241 ~l~~Pl 246 (398)
+.++|.
T Consensus 197 InaTp~ 202 (284)
T PRK12549 197 VHATPT 202 (284)
T ss_pred EECCcC
Confidence 999985
No 227
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.62 E-value=0.0072 Score=63.38 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=51.3
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
+.++.+++++|+|.|.+|+++++.+ ...|++|.+++++.... +...+.+ +.. .....++.+ +..+|+
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI 393 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence 4568899999999999999999998 58899999999876432 2211111 100 001122222 468999
Q ss_pred EEEccCCC
Q 015895 240 ISLHPVLD 247 (398)
Q Consensus 240 V~l~~Plt 247 (398)
|+.|+|..
T Consensus 394 VInatP~g 401 (477)
T PRK09310 394 IINCLPPS 401 (477)
T ss_pred EEEcCCCC
Confidence 99999964
No 228
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.60 E-value=0.0092 Score=55.34 Aligned_cols=101 Identities=24% Similarity=0.261 Sum_probs=59.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Cccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVTW 224 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~~ 224 (398)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-+. + +++ .+.....+.+.... ....
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4699999999999999999999984 6786 899999873110 0 000 00000111111100 0000
Q ss_pred --ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 225 --KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 225 --~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
... .+++++++++|+|+.++. +.+++.++++......+
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT 137 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence 011 235677889999988875 46777777765555433
No 229
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.60 E-value=0.0062 Score=59.65 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=32.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCCh
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQ 199 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~ 199 (398)
++.||++.|+|.|.+|++++..| ...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCc
Confidence 47889999999999999999987 578985 99999985
No 230
>PLN02477 glutamate dehydrogenase
Probab=96.58 E-value=0.059 Score=55.38 Aligned_cols=117 Identities=27% Similarity=0.352 Sum_probs=71.9
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC----------hhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (398)
|.+++|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+ ... +.++.+..+ .+. + .+ +....
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g-~l~--~-~~-~a~~i- 272 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGG-GLK--G-FP-GGDPI- 272 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcC-chh--c-cc-cceEe-
Confidence 3579999999999999999999998 68999999 44544 221 111111000 000 0 00 01111
Q ss_pred CHHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 229 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 229 sl~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
+.+++ ...||+++-|. ..+.|+++...+++ -.+++-.+-+.+ ..+ -.+.|++..|.
T Consensus 273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~ 329 (410)
T PLN02477 273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV 329 (410)
T ss_pred cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence 22333 35899988665 35678888888875 447777888887 333 34666666543
No 231
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.54 E-value=0.44 Score=47.78 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=64.7
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+.|++|++||=+ ++..+.+..+ ..||++|.+..|..-.-.+...+......+..| ..+....++++.+++||+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF 228 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4889999999986 5788888876 589999999887531100111000000001112 123345789999999999
Q ss_pred EEEcc----CCChh---hh------hhccHHHHhcC-CCCcEEEEcC
Q 015895 240 ISLHP----VLDKT---TY------HLINKERLATM-KKEAILVNCS 272 (398)
Q Consensus 240 V~l~~----Plt~~---T~------~li~~~~~~~m-k~gailIN~a 272 (398)
|..-. ....+ .+ -.++++.++.+ |+++++.-|.
T Consensus 229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 97622 21011 11 12577788876 7888888773
No 232
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.52 E-value=0.011 Score=49.98 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=53.4
Q ss_pred eEEEEe-cChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 167 tvGIIG-lG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++||+| .|.+|+.+++.+...-+.++.+. ++..+. .+.....+ ... ...........+++ ..++|+|++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAG-PHL---KGEVVLELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHC-ccc---ccccccccccCChh--hcCCCEEEEcC
Confidence 589999 59999999998743236676665 433211 01100000 000 00000000112222 25899999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
|.. .+...+. .....+++|.++|+++.
T Consensus 74 ~~~-~~~~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 74 PHG-VSKEIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CcH-HHHHHHH-HHHhhhcCCCEEEECCc
Confidence 964 3333332 23456799999999974
No 233
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.51 E-value=0.013 Score=48.53 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhcc
Q 015895 176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255 (398)
Q Consensus 176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~ 255 (398)
-+..+++.| +..|++|.+|||.......... +. ..++....++++.++.+|.|+++++- ++-+.+--
T Consensus 18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~ 84 (106)
T PF03720_consen 18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATDH-DEFRELDW 84 (106)
T ss_dssp HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred HHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEecC-HHHhccCH
Confidence 466788988 7899999999999876432210 00 01133346899999999999999985 34333323
Q ss_pred HHHHhcCCCCcEEEEcC
Q 015895 256 KERLATMKKEAILVNCS 272 (398)
Q Consensus 256 ~~~~~~mk~gailIN~a 272 (398)
++....|+++.++|++-
T Consensus 85 ~~~~~~~~~~~~iiD~~ 101 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGR 101 (106)
T ss_dssp HHHHHHSCSSEEEEESS
T ss_pred HHHHHhcCCCCEEEECc
Confidence 45567788999999973
No 234
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.50 E-value=0.014 Score=55.92 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhhhhhhcCC-CCccccccCCH
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM 230 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~sl 230 (398)
+++|+++.|=|+|++|+.+|+.| ...|++|++. ||..-+ .+..+.+..+..+..... .+.+... .+-
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~~ 106 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEY-IPN 106 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEE-ECH
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeE-ecc
Confidence 69999999999999999999998 6889998876 654322 222211221110110000 0000111 122
Q ss_pred H-HHh-hcCCEEEEccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 231 ~-ell-~~aDiV~l~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
+ +++ ..||+++-|.- .+.|+.+... .++.++.+|--+--..+..++.. .|++..|.
T Consensus 107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL 165 (244)
T ss_dssp HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence 2 555 68999998842 5668888887 77766666555444444455554 77766553
No 235
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.50 E-value=0.034 Score=55.17 Aligned_cols=109 Identities=12% Similarity=0.001 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCCcEEEEEcCChhh------HHH---HHHhhhhhhhhhcCCCC--------ccccccC--CHHHHhhc
Q 015895 176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLE---KFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE 236 (398)
Q Consensus 176 IG~~vA~~la~~fG~~V~~~d~~~~~------~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~--sl~ell~~ 236 (398)
||..+|..++ ..|++|+.||+++.. .++ ......-......+... ....... ++.+.+++
T Consensus 1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 79 (314)
T PRK08269 1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD 79 (314)
T ss_pred CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence 6899999875 679999999998832 011 11110000111111110 0111112 25688899
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~ 287 (398)
||+|+-++|-+.+.+.-+-++..+.++++++|...+. .+....|.+.++
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~ 128 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVA 128 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcC
Confidence 9999999999999998888888889999999954444 455677777775
No 236
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.49 E-value=0.012 Score=56.49 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=70.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-c-------CChh--hHHHHHH---hhhhhhhhhcC-CCCccccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQA--TRLEKFV---TAYGQFLKANG-EQPVTWKR 226 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d-------~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~ 226 (398)
.++.|+|+.|-|||++|+.+|+.| ..+|++|++. | +.-- +.+..+. +...+.+.... ..+ +...
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~~ 111 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAKY 111 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCEE
Confidence 579999999999999999999998 6899999943 3 2210 1111100 00000000000 000 0111
Q ss_pred cCCHHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 227 ~~sl~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
.+.+++ -..|||++-|. +.+.|+.+...+++ +-.+++-.+-|++-. +-.+.|.+..+
T Consensus 112 -~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI 171 (254)
T cd05313 112 -FEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV 171 (254)
T ss_pred -eCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence 123333 35799998764 57889999888884 344666777777644 34466666554
No 237
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.47 E-value=0.031 Score=54.95 Aligned_cols=128 Identities=13% Similarity=0.275 Sum_probs=66.6
Q ss_pred CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+|||.|.+|..+|..++. +++ +|+.+|+..........+.... ....+ .........+.+ .+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence 589999999999999998752 234 9999999664321111111110 00011 111122224564 479999999885
Q ss_pred --CCChh---------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhcCCccEEE--ec
Q 015895 245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD 297 (398)
Q Consensus 245 --Plt~~---------T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~a--L~~g~i~gAa--lD 297 (398)
|..+. +..++. .+.+....+.+++|+.+-..=+-...+.+. +...++.|.+ ||
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld 148 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD 148 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence 32221 112221 112333346678888754333333333332 2224666654 55
No 238
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.46 E-value=0.046 Score=48.76 Aligned_cols=105 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred CCCeEEEEe--cChhHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIG--lG~IG~~vA~~la~~fG~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.|++|++|| -+++..+++..+ ..||+++.+..|..- +......+.........+ ..+....+++|.++++|+
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv 76 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV 76 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence 488999999 389999999987 689999999988762 111111111001111112 112234789999999999
Q ss_pred EEEccCC----Chhh-------hhhccHHHHhcCCCCcEEEEcC
Q 015895 240 ISLHPVL----DKTT-------YHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 240 V~l~~Pl----t~~T-------~~li~~~~~~~mk~gailIN~a 272 (398)
|..-.-. .+.. .-.++++.++.+|++++|.-|.
T Consensus 77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 9654433 1110 1246888999999999998884
No 239
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.43 E-value=0.014 Score=52.15 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=36.9
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202 (398)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~ 202 (398)
...+|.|++|.|||.|.+|...++.| ...|++|.+++|...++
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~ 49 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKE 49 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHH
Confidence 34589999999999999999999998 58999999998765543
No 240
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.42 E-value=0.022 Score=56.49 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDi 239 (398)
.+++|+|||.|.+|+.+|-.+ ...|. ++..||.........-.+. .+... ..... ...+. +.+++||+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl-----~~~~~~~~~~~i-~~~~~-~~~~~adi 76 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDL-----SHAVPFTSPTKI-YAGDY-SDCKDADL 76 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHH-----HhhccccCCeEE-EeCCH-HHhCCCCE
Confidence 467999999999999999987 45565 8999998654321111111 11100 01111 12344 44799999
Q ss_pred EEEccCC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCC
Q 015895 240 ISLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSR 273 (398)
Q Consensus 240 V~l~~Pl--t~-~T~-~li--~----~---~~~~~mk~gailIN~aR 273 (398)
|++..-. .+ +++ .++ | + +.+..-.+.+++|+++-
T Consensus 77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 9886532 22 222 222 1 1 22333446889999873
No 241
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.41 E-value=0.027 Score=56.10 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=70.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+..++|+|||.|.||..+|..++ ..| .+|+.+|..+........+.... ....+ .........+.+ .++.||+|+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI 79 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI 79 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence 45579999999999999998864 445 48999998876422111221111 01011 111222224664 569999999
Q ss_pred EccCC--Ch--------------hhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--cCCccEEE
Q 015895 242 LHPVL--DK--------------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG 295 (398)
Q Consensus 242 l~~Pl--t~--------------~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gAa 295 (398)
++.-. .+ ++..++. .+.+....|.+++|+.+-..=+-...+.+.-. ..++.|.+
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 87622 11 1122221 12334445677999998533233333443332 23566655
No 242
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0045 Score=62.00 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
++||||||-|-.|+.++.. ++.+|.+|++.||.+..-..+..+ .- ....+.....+.+++++||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~-i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RV-IVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------ce-eecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999998 489999999999987542222100 00 00001112257899999999964
No 243
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0066 Score=57.32 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=50.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV~l~~ 244 (398)
|++.|+|+|++|+.+|+.| ...|++|+..|.......+...+.+.... ....+ ....-|+++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~gd~-t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIGDA-TDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEecC-CCHHHHHhcCCCcCCEEEEee
Confidence 5799999999999999998 69999999999988654331111110000 00000 011235565 78899999999
Q ss_pred CCCh
Q 015895 245 VLDK 248 (398)
Q Consensus 245 Plt~ 248 (398)
..+.
T Consensus 75 ~~d~ 78 (225)
T COG0569 75 GNDE 78 (225)
T ss_pred CCCH
Confidence 8543
No 244
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.36 E-value=0.096 Score=53.18 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=93.8
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh----hh----hhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AY----GQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
|+|.|+|.|-+|-..+-.+ ..+|++|+.+|....+. +.... .| ...+++..... +...-.+.++.++.+
T Consensus 1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKV-ELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHH-HHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence 5799999999999999998 48999999999887642 11111 11 11122111110 122235788889999
Q ss_pred CEEEEccCCChhhhhhcc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc-CCCCCCCC-C
Q 015895 238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FEDEPYMK-P 307 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~--------~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV-~~~EP~~~-~ 307 (398)
|++++++|....-.+-+| ++..+.++..+++|+=|+-.+--.+.+.+-+.+..-.. -.+| +.+|=+.. +
T Consensus 78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~ 156 (414)
T COG1004 78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS 156 (414)
T ss_pred CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence 999999996554333332 34556677779999999977766666666555443222 3333 44554422 1
Q ss_pred ---CCCCCCceEEcCCCCCCcHH
Q 015895 308 ---GLSEMKNAIVVPHIASASKW 327 (398)
Q Consensus 308 ---~L~~~~nvilTPHia~~T~e 327 (398)
..+.-+++++ |..+..
T Consensus 157 Av~D~~~PdRIVi----G~~~~~ 175 (414)
T COG1004 157 AVYDFLYPDRIVI----GVRSER 175 (414)
T ss_pred hhhhccCCCeEEE----ccCChh
Confidence 2333356654 555544
No 245
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.011 Score=58.17 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR 202 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~ 202 (398)
.|+.+||+|+|-+|.--.+. |++|||+|++.|+..+++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk 218 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK 218 (360)
T ss_pred CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH
Confidence 89999999999999877776 699999999999986443
No 246
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.30 E-value=0.013 Score=54.86 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=68.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~~aDi 239 (398)
.++.||+|.|||-|.+|..=|+.+ ...|++|+++.+...+++..+.+. +. ..+. ...+.+++ ..+++
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~--------~~--i~~~~~~~~~~~~-~~~~l 75 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE--------GK--IKWIEREFDAEDL-DDAFL 75 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh--------cC--cchhhcccChhhh-cCceE
Confidence 579999999999999999999998 589999999999885555443321 11 1111 11234444 45999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
|+.+++..+ +|+..+..+++-.+++|+.-
T Consensus 76 viaAt~d~~-----ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 76 VIAATDDEE-----LNERIAKAARERRILVNVVD 104 (210)
T ss_pred EEEeCCCHH-----HHHHHHHHHHHhCCceeccC
Confidence 999997432 56777777888778888743
No 247
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.23 E-value=0.047 Score=54.17 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=68.7
Q ss_pred CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCC-ccccccCCHHHHhhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~sl~ell~~aDiV~l 242 (398)
.+|+|||.|.||..+|-.++ ++..-++..||...........+. .+.. ... .......+.++ +++||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl-----~~~~~~~~~~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDL-----QHGSAFLKNPKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHH-----HHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence 48999999999999998764 244558999998764322211111 1111 000 11222245665 799999998
Q ss_pred ccCC--Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895 243 HPVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV 294 (398)
Q Consensus 243 ~~Pl--t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA 294 (398)
+.-. .+ +|| .++ | .+.+....+.+++|+++- ++|.-+ +.+. +...++.|.
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN--P~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN--PVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC--hHHHHHHHHHHHhCCCHHHEEec
Confidence 6432 22 344 222 1 123444578899999983 444433 3333 444566665
No 248
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.22 E-value=0.97 Score=44.68 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+.|.+|+++|= +++-++.+..+ ..||++|.+..|..-...+...+.........| ..+....++++.+++||+|.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy 221 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY 221 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence 88999999997 78888888876 689999999887532111111110000001111 12334468999999999997
Q ss_pred Ecc--CCCh-----h-----hhhhccHHHHhcCCCCcEEEEc
Q 015895 242 LHP--VLDK-----T-----TYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 242 l~~--Plt~-----~-----T~~li~~~~~~~mk~gailIN~ 271 (398)
.-. .... + ..-.++++.++.+|+++++.-|
T Consensus 222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 632 1100 0 0113566777777777766655
No 249
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.21 E-value=0.018 Score=57.78 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=59.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh-------------HH---HHHHhhhhhhhhhcCCC-Cc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RL---EKFVTAYGQFLKANGEQ-PV 222 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~-------------~~---~~~~~~~~~~~~~~~~~-~~ 222 (398)
..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+ .. ....+.....+++.... ..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 4699999999999999999999985 6786 78888886410 00 00000000111111100 00
Q ss_pred -ccc---ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895 223 -TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (398)
Q Consensus 223 -~~~---~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~ 260 (398)
... ...+++++++++|+|+.++ .+.+++-++++-...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~ 139 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK 139 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence 000 0124678889999999888 467788888765444
No 250
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.20 E-value=0.034 Score=57.89 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=69.6
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
-+.+++|+|+|+|..|+++|+.| +..|++|.++|...........+ .++..+ ..+.......+.+.++|+|+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV 82 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF 82 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence 36788999999999999999998 79999999999865322110000 011222 11111122234457899998
Q ss_pred EccCCChhhhhh-----------ccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHPVLDKTTYHL-----------INK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~l-----------i~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
.. |.-+.+... +++ +.+ ...+...+-|--+.|..--..-|...|+.
T Consensus 83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 77 332222221 221 122 22333456666677887766667777764
No 251
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.19 E-value=0.026 Score=56.42 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=33.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.|++|+|+|+|-.|....+. |+++|++|+++|++..+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K 202 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence 48899999999999988887 48999999999998865
No 252
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.19 E-value=0.02 Score=65.05 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=47.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl 230 (398)
+.|+|+|||.|.||+..|+.|++.-+.+ |.+.|++.... +...+.+ .+...... .+.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS 639 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence 4679999999999999999986443444 88899987542 2211111 01100111 12344
Q ss_pred HH---HhhcCCEEEEccCC
Q 015895 231 DE---VLREADVISLHPVL 246 (398)
Q Consensus 231 ~e---ll~~aDiV~l~~Pl 246 (398)
++ +++++|+|++++|.
T Consensus 640 e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCCCEEEECCCc
Confidence 44 44689999999995
No 253
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.15 E-value=0.012 Score=55.31 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=90.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcC--CCCcc-----------cc
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG--EQPVT-----------WK 225 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~~~-----------~~ 225 (398)
...-+.|+|||.|.||+.+|+.. ..-|.+|+.+|.+.....+. .+....++. +.. ..+.. ..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A-~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~ 85 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRA-TKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK 85 (298)
T ss_pred cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHH-HHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence 34456899999999999999985 58899999999987642211 111111111 111 11110 11
Q ss_pred ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC
Q 015895 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304 (398)
Q Consensus 226 ~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~ 304 (398)
...++.++++.+|+|+=++--+-+.+.-|-++.=..+|+.+++. |+|. +...++..++++. -..++|--|.+-|
T Consensus 86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP- 160 (298)
T KOG2304|consen 86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP- 160 (298)
T ss_pred HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch-
Confidence 23456667777887765544333333223344444578888775 4444 3456677777754 4668888887654
Q ss_pred CCCCCCCCCceEEcCCCCCCcHHH
Q 015895 305 MKPGLSEMKNAIVVPHIASASKWT 328 (398)
Q Consensus 305 ~~~~L~~~~nvilTPHia~~T~ea 328 (398)
...+-.||=|+..+-.|..+
T Consensus 161 ----vMKLvEVir~~~TS~eTf~~ 180 (298)
T KOG2304|consen 161 ----VMKLVEVIRTDDTSDETFNA 180 (298)
T ss_pred ----hHHHhhhhcCCCCCHHHHHH
Confidence 33444467777665444433
No 254
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.14 E-value=0.034 Score=55.81 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=45.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhh----hhhcC--CCCccccccCCHHHHhhcCC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQF----LKANG--EQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~sl~ell~~aD 238 (398)
.+|||+|+|+||+.+++.++..-++++.+. |+.+ ...+.....++-. ..... ....+.....++++++..+|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 379999999999999998743447887665 4332 2111111100000 00000 00011222346788888999
Q ss_pred EEEEccCC
Q 015895 239 VISLHPVL 246 (398)
Q Consensus 239 iV~l~~Pl 246 (398)
+|+.|.|.
T Consensus 81 VVIdaT~~ 88 (341)
T PRK04207 81 IVVDATPG 88 (341)
T ss_pred EEEECCCc
Confidence 99999985
No 255
>PRK11579 putative oxidoreductase; Provisional
Probab=96.12 E-value=0.053 Score=54.18 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895 166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~ 241 (398)
.++||||+|.||+. .+..+.+.-++++. ++|++.....+. .+ +...+.+++++++ +.|+|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~ell~~~~vD~V~ 69 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKAD-----------WP----TVTVVSEPQHLFNDPNIDLIV 69 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhh-----------CC----CCceeCCHHHHhcCCCCCEEE
Confidence 47999999999985 56655333467776 578765432111 01 1123468999996 579999
Q ss_pred EccCCC
Q 015895 242 LHPVLD 247 (398)
Q Consensus 242 l~~Plt 247 (398)
+++|..
T Consensus 70 I~tp~~ 75 (346)
T PRK11579 70 IPTPND 75 (346)
T ss_pred EcCCcH
Confidence 999953
No 256
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.09 E-value=0.023 Score=58.65 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=47.6
Q ss_pred CeEEEEecChhHHHHHH--HHH---hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~--~la---~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+|+|||.|.+|...+- -++ ...|.+|..||+.+.... .........+...+ .........++.+.++.||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~-~~~~~~~~~~~~~~-~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLE-TVEILAKKIVEELG-APLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHhcC-CCeEEEEeCCHHHHhcCCCEE
Confidence 36999999999998554 121 123579999999875421 11110000111111 122233346788999999999
Q ss_pred EEccC
Q 015895 241 SLHPV 245 (398)
Q Consensus 241 ~l~~P 245 (398)
+.++|
T Consensus 79 i~ai~ 83 (423)
T cd05297 79 INTIQ 83 (423)
T ss_pred EEeeE
Confidence 99998
No 257
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.08 E-value=0.04 Score=53.36 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=59.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|+|+| +|+||+.+++.+...-++++.+ +|+..+....+... ...+..+.++....+++++...+|+|+.+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdf 75 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDF 75 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence 3799999 6999999999875446787655 67432211000000 00111111233346788886679999998
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhc
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQ 288 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~ 288 (398)
.|- +... +-....++.|.-+|-...|--. +.+.|.++.+.
T Consensus 76 T~p-~~~~----~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 76 TTP-EGVL----NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred CCh-HHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 863 2222 2233334455445544445322 22335555554
No 258
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.07 E-value=0.069 Score=52.65 Aligned_cols=109 Identities=20% Similarity=0.301 Sum_probs=62.4
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|+|||.|.+|+.+|..| ...| .++..+|+........ ...+.......+ ..... ...+.+ .++.||+|+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~~~~-a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit 75 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKAEGE-ALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT 75 (306)
T ss_pred CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHh-HhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence 4799999999999999987 4566 5899999976542111 111100000001 00011 123444 47899999998
Q ss_pred cCCCh---hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895 244 PVLDK---TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 244 ~Plt~---~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a 281 (398)
..... ++| .++ | .+.+....+.+++|+++ .++|.-+
T Consensus 76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~ 124 (306)
T cd05291 76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT 124 (306)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence 76521 122 222 1 12345557788999987 4555444
No 259
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.06 E-value=0.079 Score=54.73 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=71.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++.+|++.|+|.|.+|.++|+.| ...|++|.++|+..........+. +...+. ........++....+|+|+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv 73 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVV 73 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEE
Confidence 46899999999999999999998 589999999999753322221111 111121 1212223346677899998
Q ss_pred EccCCChhhhhhc----------c-HHH-HhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHPVLDKTTYHLI----------N-KER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~li----------~-~~~-~~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
.+.-..+...-+. . .+. ....+...+-|--+.|..--..-|...|+.
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8754433322111 1 111 222233345555577887777767777764
No 260
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.05 E-value=0.015 Score=55.91 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=65.6
Q ss_pred cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
.|.+|+..|++|+|+ |.||..+||.| .+.+.+....-|.....-++..+. +. .+.+.....|++..+.+.
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~~----l~----e~~~~~~i~s~d~~~~~e 231 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLTL----LQ----EELGRGKIMSLDYALPQE 231 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhhh----cc----cccCCCeeeecccccccc
Confidence 568999999999998 99999999998 466665544443332211111100 11 112222345666666666
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde 279 (398)
|+++-.... .+-..|+.+ ++|||++++|-++..=+|+
T Consensus 232 ~i~v~vAs~--~~g~~I~pq---~lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 232 DILVWVASM--PKGVEIFPQ---HLKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred ceEEEEeec--CCCceechh---hccCCeEEEcCCcCccccc
Confidence 766533321 234556664 4689999999998765544
No 261
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.04 E-value=0.034 Score=57.62 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=69.0
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhh----hhhhhhcCCCCcccc
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAY----GQFLKANGEQPVTWK 225 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~ 225 (398)
|.+|.|+||.|.|+|++|+..|+.| ..+|++|++...+. ...+. +...+ ...+.... ...+..
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~~~v~~~~-~~~ga~ 299 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYRGRIREYA-EKYGCK 299 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcCCchhhhH-hhcCCE
Confidence 4579999999999999999999998 68999999843311 01111 00000 00010000 000111
Q ss_pred ccCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCC-Cc-EEEEcCCCchhcHHHHHHHHhcC
Q 015895 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 226 ~~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g 289 (398)
..+.++++ ..|||++-|. +.+.|+++...+++. |. +++-.|-| ++..++...-.+.|
T Consensus 300 -~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 300 -YVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred -EcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 11334442 5699988554 478899888888865 45 44555555 66666554444433
No 262
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.03 E-value=0.014 Score=54.11 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=45.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++++|||- |.||+.+++.+ +..|+.|. +++||+|++|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilav 39 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSV 39 (197)
T ss_pred CEEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeC
Confidence 47999999 99999999998 78888763 25799999999
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
|- ..+..++. .+. .+++|++.-+
T Consensus 40 Pv-~~~~~~i~-----~~~--~~v~Dv~SvK 62 (197)
T PRK06444 40 PI-DAALNYIE-----SYD--NNFVEISSVK 62 (197)
T ss_pred CH-HHHHHHHH-----HhC--CeEEeccccC
Confidence 95 34444443 222 3788998744
No 263
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.02 E-value=0.052 Score=44.96 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=54.9
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEEEEc
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH 243 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV~l~ 243 (398)
+-|+|+|.+|+.+++.| +..+.+|++.|..+..... ++..+ .........+.+.+ ++++|.|+++
T Consensus 1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEG-VEVIYGDATDPEVLERAGIEKADAVVIL 69 (116)
T ss_dssp EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhcc-cccccccchhhhHHhhcCccccCEEEEc
Confidence 56999999999999998 5666799999998765221 11222 11111122233322 6889999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
.+.. ...+.-...++.+.+...+|-
T Consensus 70 ~~~d--~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 70 TDDD--EENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SSSH--HHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCH--HHHHHHHHHHHHHCCCCeEEE
Confidence 9854 333333455566556555554
No 264
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.01 E-value=0.016 Score=50.65 Aligned_cols=110 Identities=20% Similarity=0.354 Sum_probs=62.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
++|+|||. |++|+.+|-.|.. +++-++..+|...........+.... ... ............+.+++||+|++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~-~~~---~~~~~~i~~~~~~~~~~aDivvit 76 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHA-SAP---LPSPVRITSGDYEALKDADIVVIT 76 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHH-HHG---STEEEEEEESSGGGGTTESEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhh-hhh---cccccccccccccccccccEEEEe
Confidence 47999999 9999999987643 66679999999865322111111100 000 001111122455668999999998
Q ss_pred c--CCCh-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895 244 P--VLDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 244 ~--Plt~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a 281 (398)
. |..+ +++ .++ |. +.+....+.++++.++- ++|.-+
T Consensus 77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd~~t 125 (141)
T PF00056_consen 77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVDVMT 125 (141)
T ss_dssp TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHHHHH
T ss_pred ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHHHHH
Confidence 7 3332 222 222 11 23344457788888854 466433
No 265
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.00 E-value=0.04 Score=52.80 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
.++-|+|-|.+++.+|+.+ +.+|++|.++|+++....+ ..+..++.+....|
T Consensus 101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~~---------------------------~~~~~~~~~~~~~~ 152 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFPE---------------------------DLPDGVATLVTDEP 152 (246)
T ss_pred CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcccccc---------------------------cCCCCceEEecCCH
Confidence 3799999999999999985 8999999999987531100 00123343322222
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
.+.+..+.+++.+|=++|+.-.|.+.|..+|++..
T Consensus 153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~ 187 (246)
T TIGR02964 153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGD 187 (246)
T ss_pred ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence 12333355678888888999999999999995433
No 266
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.98 E-value=0.047 Score=56.06 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=63.2
Q ss_pred ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 015895 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231 (398)
Q Consensus 162 ~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ 231 (398)
.+.|++|+|+|+ ..-...+++.| ...|++|.+|||........ . .....+++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~------------~-----~~~~~~~~ 371 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK------------G-----LPLIDDLE 371 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh------------h-----cccCCCHH
Confidence 479999999998 45778899998 68999999999986542111 0 01136788
Q ss_pred HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
+.++.||.|+++.+- ++-+. ++-+.+..+-...+++|+
T Consensus 372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~~~~v~D~ 409 (411)
T TIGR03026 372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMKGKVVVDT 409 (411)
T ss_pred HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcCCCEEEeC
Confidence 999999999999985 33222 454445443335578874
No 267
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.95 E-value=0.017 Score=50.36 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=72.0
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccc-cCCHHHHhhcCCEEEEccC
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV 245 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~sl~ell~~aDiV~l~~P 245 (398)
|.|+|.|.||.-+|.+| +..|.+|..+++.. . .+...+ .+-.+.... ........ .....+-...+|+|++++.
T Consensus 1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~-~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSP-R-LEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHH-HHTTCEEEEEESHH-H-HHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHH-HHCCCceEEEEccc-c-HHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 68999999999999998 46899999999877 2 111111 010011101 00000001 1112245688999999997
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal 296 (398)
. .++...+.. .-..+.+++.++-.--| +-.++.+.+.+...++.++..
T Consensus 77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 5 455665544 55556677677766554 555777777775556655443
No 268
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.95 E-value=0.011 Score=59.89 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=52.4
Q ss_pred EEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
|+|+|.|.+|+.+++.|++.... +|++.|++.....+ ..+. ....... .........+++++++++|+|+.|+|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~~~~~~~~~---~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEKLLGDRVEA---VQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT--TTTTEEE---EE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhhccccceeE---EEEecCCHHHHHHHHhcCCEEEECCc
Confidence 78999999999999998655556 99999999865321 1110 0000000 00011112347889999999999998
Q ss_pred CChhhhhhccHHH-HhcCCCCcEEEEc
Q 015895 246 LDKTTYHLINKER-LATMKKEAILVNC 271 (398)
Q Consensus 246 lt~~T~~li~~~~-~~~mk~gailIN~ 271 (398)
-. .+... -..++.|.-.||+
T Consensus 77 p~------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 77 PF------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp GG------GHHHHHHHHHHHT-EEEES
T ss_pred cc------hhHHHHHHHHHhCCCeecc
Confidence 43 12222 2223456666663
No 269
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.90 E-value=0.033 Score=47.10 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=64.3
Q ss_pred CeEEEEe----cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIG----lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
|++.||| -+..|..+.+.| +..|.+|+..+|..... .+...+.+++|.-...|+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav 60 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV 60 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence 6899999 799999999998 67999999998866321 12234567887448899999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 292 (398)
+++|. +.+..++. .+..+..+.+++..+ ..++++.+.+++..+.
T Consensus 61 v~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 61 VCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp E-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred EEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 99994 34455553 233346677888877 5667788888876654
No 270
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.83 E-value=0.043 Score=53.91 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=42.6
Q ss_pred EEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
|+|||.|.||..+|..++. +++ +|+.+|+..........+.... ..... .........+.++ ++.||+|+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~-~~~~~-~~~~I~~t~d~~~-l~dADiVIit~ 74 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA-APILG-SDTKVTGTNDYED-IAGSDVVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh-hhhcC-CCeEEEEcCCHHH-hCCCCEEEEec
Confidence 6899999999999988742 334 9999999864321111111100 01111 1112222235554 79999999876
No 271
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.83 E-value=0.03 Score=54.65 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=51.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|+++.|||.|.+|++++..| ...|+ +|.+++|+.... +.+.+.+. .... ........++.+.+.++|+|
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~----~~~~-~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGV----QVGV-ITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhh----hcCc-ceeccchhhhhhcccCCCEE
Confidence 46789999999999999999998 57887 799999987542 22222211 0000 00000001234556789999
Q ss_pred EEccCCC
Q 015895 241 SLHPVLD 247 (398)
Q Consensus 241 ~l~~Plt 247 (398)
+.++|..
T Consensus 195 InaTp~g 201 (282)
T TIGR01809 195 VSTVPAD 201 (282)
T ss_pred EECCCCC
Confidence 9999963
No 272
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.82 E-value=0.059 Score=55.84 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=71.6
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE--------EcCChhh--H---HHHHHhhhhhhhhhc-CCCCcccc
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKAN-GEQPVTWK 225 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~ 225 (398)
|.++.|+||.|=|+|++|+..|+.| ..+|++|++ ||+.--. . +..+.+..++..... ...+ +..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~ 300 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST 300 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence 3479999999999999999999998 689999999 8855321 1 111111100000000 0000 111
Q ss_pred ccCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 226 ~~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
.. +-++++ ..||+++-|. +.+.|+.+...++. +-.+++-.|-| ++..+|- +.|++..|
T Consensus 301 ~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 301 FF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred Ec-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 11 223333 4699887654 57888888777772 23466666666 5555543 55555544
No 273
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.79 E-value=0.53 Score=47.15 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=62.6
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+.|++|++||-+ ++.++.+..+ ..||++|.+..|..-.-.+.+.+......+..| ..+....++++++++||+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV 227 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 3889999999997 7888888876 589999998877532111111110000011112 123334689999999999
Q ss_pred EEEccCC--C-----hhh-----hhhccHHHHh-cCCCCcEEEEc
Q 015895 240 ISLHPVL--D-----KTT-----YHLINKERLA-TMKKEAILVNC 271 (398)
Q Consensus 240 V~l~~Pl--t-----~~T-----~~li~~~~~~-~mk~gailIN~ 271 (398)
|..-+=. . ++- .--++++.++ .+|+++++.-|
T Consensus 228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 9763210 0 010 1124566666 46777777655
No 274
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.72 E-value=0.042 Score=51.84 Aligned_cols=107 Identities=24% Similarity=0.227 Sum_probs=64.2
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Cccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVTW 224 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~~ 224 (398)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-.. + +++ .+.....+.+.... ....
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999985 6676 788887654210 0 000 00000111111100 0000
Q ss_pred -c-c--cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 225 -K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 225 -~-~--~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
. . ..+++++++++|+|+.|+. +.+++.++++..... +..+|.++
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence 0 1 1235678889999999886 577888887665543 45667764
No 275
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.66 E-value=0.33 Score=47.33 Aligned_cols=192 Identities=21% Similarity=0.194 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 015895 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM------- 190 (398)
Q Consensus 122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f----G~------- 190 (398)
.+|=.+++-+|+.+|- .|..|.+.+|.|+|.|.-|-.+|+.+. .. |.
T Consensus 3 GTa~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~ 60 (279)
T cd05312 3 GTAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARK 60 (279)
T ss_pred hHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccC
Confidence 3556677777777772 345788999999999999999999874 43 65
Q ss_pred EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895 191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
+++.+|+..- ..+..+...|.. . . .+ ....+|.|+++ +.|+++-+-- .-++|.++.++.|.
T Consensus 61 ~i~~vD~~Gll~~~r~~l~~~~~~~a~---~-~-~~---~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma 128 (279)
T cd05312 61 KIWLVDSKGLLTKDRKDLTPFKKPFAR---K-D-EE---KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMA 128 (279)
T ss_pred eEEEEcCCCeEeCCCCcchHHHHHHHh---h-c-Cc---ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHH
Confidence 8888887621 011122222211 1 1 00 12358999999 8899985431 24789999999998
Q ss_pred ---CCcEEEEcCCCchhcHHHHHHHHh--cCC-ccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHH-----HHHH
Q 015895 264 ---KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW-----TREG 331 (398)
Q Consensus 264 ---~gailIN~aRG~~vde~aL~~aL~--~g~-i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~e-----a~~~ 331 (398)
+..++.=.|....--|-.=.++.+ +|+ |.+.|.-.-..+..-. ..--+-.|+++-|-++-.... --+.
T Consensus 129 ~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~ 208 (279)
T cd05312 129 KSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE 208 (279)
T ss_pred hcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence 899999999876522222223333 354 5555431111111000 112345689999988753221 1245
Q ss_pred HHHHHHHHHHHHHcCC
Q 015895 332 MATLAALNVLGKIKGY 347 (398)
Q Consensus 332 ~~~~~~~ni~~~l~g~ 347 (398)
|...+++.|..+..-+
T Consensus 209 m~~aAA~aLA~~~~~~ 224 (279)
T cd05312 209 MFLAAAEALASLVTDE 224 (279)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 5566666666655443
No 276
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.65 E-value=0.095 Score=54.37 Aligned_cols=124 Identities=19% Similarity=0.143 Sum_probs=67.9
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC-------h--hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRLEKFVT---AYGQFLKANGEQPVTWKR 226 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~-------~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 226 (398)
+.++.|+|+.|=|+|++|+..|+.| ..+|++|+ +.|.+ - ...+..+.+ .....+........+...
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~ 310 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY 310 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence 3579999999999999999999998 68999999 55544 0 111111010 000000000000001111
Q ss_pred cCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 227 ~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
. +-++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+--.....+| .+.|++..|
T Consensus 311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI 370 (454)
T PTZ00079 311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGV 370 (454)
T ss_pred e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCc
Confidence 1 222222 4799888664 5777888877755 5555555544433444443 355555544
No 277
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.61 E-value=2.1 Score=42.38 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=63.0
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|++|+++|= +++.++.+..+ ..+|++|....|..-.......+.+ ....| ..+....++++.+++||+|
T Consensus 149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv 221 (304)
T PRK00779 149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV 221 (304)
T ss_pred CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence 378999999998 78999999887 6899999998875321111111100 01112 1233346899999999999
Q ss_pred EEc----cCCCh---h-----hhhhccHHHHhcCCCCcEEEEc
Q 015895 241 SLH----PVLDK---T-----TYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 241 ~l~----~Plt~---~-----T~~li~~~~~~~mk~gailIN~ 271 (398)
..- .+... + ..--++++.++.+|+++++.-|
T Consensus 222 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 222 YTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred EecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 764 22111 1 0112456666667777666655
No 278
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.60 E-value=0.052 Score=51.28 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=62.2
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcC
Q 015895 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREA 237 (398)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~a 237 (398)
.--+++|++|.|||-|.++..=++.| ..+|++|.++.|...+.+..+.+ .+. ..+.. ..+.. -+..+
T Consensus 19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~~-dl~g~ 86 (223)
T PRK05562 19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDKE-FIKDK 86 (223)
T ss_pred eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChH-HhCCC
Confidence 33567899999999999999977777 58999999999988766544211 111 11111 11223 35789
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
++|+.++.. ++ +|+...+.++...+++|+
T Consensus 87 ~LViaATdD-~~----vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 87 HLIVIATDD-EK----LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred cEEEECCCC-HH----HHHHHHHHHHHcCCeEEE
Confidence 999988863 22 455555555554455554
No 279
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.56 E-value=0.047 Score=53.93 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=46.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|+|||.|.+|..+|..+ ...| .+|..+|+..........+. ..... .+... ...+. +.++.||+|+
T Consensus 1 mkI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~i-~~~d~-~~l~~aDiVi 72 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVRI-YAGDY-ADCKGADVVV 72 (308)
T ss_pred CEEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence 4799999999999999987 4556 68999999764321111111 10000 00111 12344 4579999999
Q ss_pred EccCCC
Q 015895 242 LHPVLD 247 (398)
Q Consensus 242 l~~Plt 247 (398)
++.+..
T Consensus 73 ita~~~ 78 (308)
T cd05292 73 ITAGAN 78 (308)
T ss_pred EccCCC
Confidence 998863
No 280
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.076 Score=53.02 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=110.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l 242 (398)
..+|+||++-|||.++-.+ ...|..|.+|+|+.+...+- +.. ++.+.. .....|++|+ +++--.|++
T Consensus 7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD~f-lan-----eak~~~---i~ga~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVDEF-LAN-----EAKGTK---IIGAYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHHHH-HHH-----hhcCCc---ccCCCCHHHHHHhcCCCcEEEE
Confidence 4599999999999999987 58899999999998764332 111 111211 2224577777 455566766
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia 322 (398)
.+-...-...+| ++....|.+|-++||-+-..--|+..=.+.|....|...+.-|...|--... -|. +.|
T Consensus 77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPS--lMp--- 146 (487)
T KOG2653|consen 77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPS--LMP--- 146 (487)
T ss_pred EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCc--cCC---
Confidence 665444444444 6788889999999999999999999999999998899999999988753211 111 122
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 015895 323 SASKWTREGMATLAALNVLGKIKGYPI 349 (398)
Q Consensus 323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~ 349 (398)
|.+.++...+-.++-.-....-+|+|.
T Consensus 147 Gg~~~Awp~ik~ifq~iaakv~~~epC 173 (487)
T KOG2653|consen 147 GGSKEAWPHIKDIFQKIAAKVSDGEPC 173 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445666666655443332222355553
No 281
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.51 E-value=0.048 Score=56.92 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+|+||+|.|||-|.++..=++.| ..+|++|.++.|...+++..+.+ .+. ..+..-.-.++.++.+++|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv 76 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA 76 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence 579999999999999999978877 58999999999887665443211 111 1121111123456889998
Q ss_pred EEccCCCh
Q 015895 241 SLHPVLDK 248 (398)
Q Consensus 241 ~l~~Plt~ 248 (398)
+.++...+
T Consensus 77 ~~at~d~~ 84 (457)
T PRK10637 77 IAATDDDA 84 (457)
T ss_pred EECCCCHH
Confidence 88887543
No 282
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.50 E-value=1.4 Score=44.25 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=49.8
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+.|++|++||-+ ++..+.+..+ ..||+++.+..|..-.-...+.+......+..| ..+....++++.+++||+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv 228 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF 228 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4889999999976 6899998886 589999999887532111111110000011112 123345789999999999
Q ss_pred EEEc
Q 015895 240 ISLH 243 (398)
Q Consensus 240 V~l~ 243 (398)
|..-
T Consensus 229 vytd 232 (336)
T PRK03515 229 IYTD 232 (336)
T ss_pred EEec
Confidence 9763
No 283
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.031 Score=57.43 Aligned_cols=109 Identities=18% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
.++|.|||+|.+|.++|+.| +..|++|.++|++....... .. ... .+ ....+.+..++|+|+.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~~----~~~------~~--~~~~~~~~~~~dlvV~s~ 67 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--PY----IHE------RY--LENAEEFPEQVDLVVRSP 67 (418)
T ss_pred CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--HH----Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence 36899999999999999997 78999999999876431100 00 000 00 112334457799998887
Q ss_pred CCChhhhh----------hccHHH--Hhc--C-CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 245 VLDKTTYH----------LINKER--LAT--M-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 245 Plt~~T~~----------li~~~~--~~~--m-k~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+..+...- ++.+.. +.. + +.-.+-|-=+-|..--..=|...|+.
T Consensus 68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 65432111 222212 221 2 22245566666777666666777764
No 284
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.49 E-value=0.019 Score=58.12 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence 37899999999999999985 7899999999997643
No 285
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.48 E-value=2.2 Score=42.69 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=63.1
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+.|++|++||=+ ++.++.+..+ ..||++|....|..-.-.+.+.+.........| ..+....++++.+++||+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv 227 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDV 227 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 3889999999975 8888988886 689999999887521100111100000001112 123345789999999999
Q ss_pred EEEcc----CCCh----hh-----hhhccHHHHhcCC-CCcEEEEc
Q 015895 240 ISLHP----VLDK----TT-----YHLINKERLATMK-KEAILVNC 271 (398)
Q Consensus 240 V~l~~----Plt~----~T-----~~li~~~~~~~mk-~gailIN~ 271 (398)
|..-. .... +- .--++++.++.+| +++++.-|
T Consensus 228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 97632 1100 10 1124677777775 47777766
No 286
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.45 E-value=0.11 Score=54.62 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=70.9
Q ss_pred ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh----hhhhcC------CCC
Q 015895 162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP 221 (398)
Q Consensus 162 ~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~ 221 (398)
.+.|++|+|+|+ ..-...+++.| ...|.+|.+|||........ ..+.. +-.... ..+
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV 397 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence 589999999998 56788899998 68999999999986432111 00000 000000 000
Q ss_pred ccccccCCHHHHhhcCCEEEEccCCChhhhhhccHH-HHhcCCCCcEEEEcCCCchhcHHHH
Q 015895 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVAL 282 (398)
Q Consensus 222 ~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk~gailIN~aRG~~vde~aL 282 (398)
.......++++.++.||+|+++++- ++-+. ++-+ ....|++..+++|+ |+ ++|.+.+
T Consensus 398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 0112345677899999999999985 33333 3433 35668766689985 43 4566554
No 287
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.43 E-value=0.11 Score=51.03 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.|++++|||--.=-..++++| ...|++|+.+.-..... ...+.....+.++++++||+|++-
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~~-----------------~~~g~~~~~~~~~~~~~ad~ii~~ 62 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLDH-----------------GFTGATKSSSLEEALSDVDVIILP 62 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecccccc-----------------ccCCceeeccHHHHhccCCEEEEC
Confidence 378999999998889999998 68899988753211100 011233345678889999999999
Q ss_pred cCCChhhh---h-------hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895 244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293 (398)
Q Consensus 244 ~Plt~~T~---~-------li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g 293 (398)
+|.+.+.. . -++.+.++.|++|..++ ++.+..- +-+.+++.++..
T Consensus 63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~ 117 (296)
T PRK08306 63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKL 117 (296)
T ss_pred CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeE
Confidence 88754321 1 13578999999998444 3443322 234455555544
No 288
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.38 E-value=2.8 Score=41.47 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=47.8
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
.+.|++|+++|= +++..+.+..+ ..||+++.+..|..-. . .... ......+++|.++.||
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~-~-------------~~~~--~~~~~~d~~ea~~~aD 215 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLL-P-------------EGMP--EYGVHTDLDEVIEDAD 215 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccC-c-------------cccc--ceEEECCHHHHhCCCC
Confidence 388999999998 58999999986 6899999998874311 0 0000 1233568999999999
Q ss_pred EEEEc
Q 015895 239 VISLH 243 (398)
Q Consensus 239 iV~l~ 243 (398)
+|..-
T Consensus 216 vvyt~ 220 (305)
T PRK00856 216 VVMML 220 (305)
T ss_pred EEEEC
Confidence 99763
No 289
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.36 E-value=0.083 Score=53.14 Aligned_cols=96 Identities=17% Similarity=0.262 Sum_probs=55.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcC-CcEEE-EEcCChhh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~-~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++|+|+|. |.+|+++++.| ..+ +.++. .++++.+. .... .+. ++. +.....+.. .+.++++.++|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sagk~~~~---~~~-~l~--~~~~~~~~~-~~~~~~~~~~DvV 72 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAGKPVSE---VHP-HLR--GLVDLNLEP-IDEEEIAEDADVV 72 (346)
T ss_pred CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcCCChHH---hCc-ccc--ccCCceeec-CCHHHhhcCCCEE
Confidence 47999998 99999999998 466 67877 44654421 1111 000 000 000111111 2456666789999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
++|+|.. ....+. .+. .+.|..+||.|-.
T Consensus 73 f~alP~~-~s~~~~-~~~---~~~G~~VIDlS~~ 101 (346)
T TIGR01850 73 FLALPHG-VSAELA-PEL---LAAGVKVIDLSAD 101 (346)
T ss_pred EECCCch-HHHHHH-HHH---HhCCCEEEeCChh
Confidence 9999953 223322 111 2568999999853
No 290
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=95.35 E-value=0.11 Score=56.12 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=80.1
Q ss_pred CCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEE
Q 015895 118 VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYY 195 (398)
Q Consensus 118 ~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~ 195 (398)
.+....||.++-|=|-++| |.-....+ ..|++.+|.|||.|.+|..+|+.| .+.|. ++...
T Consensus 306 mdP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlV 368 (664)
T TIGR01381 306 FDPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFV 368 (664)
T ss_pred cCHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEE
Confidence 3556778888887777777 64322122 568999999999999999999998 47776 67777
Q ss_pred cCChhh----------HHHH-------HHhhhhhhhhhcCC-CCc-cc-----------c---------ccCCHHHHhhc
Q 015895 196 DLYQAT----------RLEK-------FVTAYGQFLKANGE-QPV-TW-----------K---------RASSMDEVLRE 236 (398)
Q Consensus 196 d~~~~~----------~~~~-------~~~~~~~~~~~~~~-~~~-~~-----------~---------~~~sl~ell~~ 236 (398)
|...-. ..+. ..+.....+.+... ... ++ . ....+.+++++
T Consensus 369 D~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~ 448 (664)
T TIGR01381 369 DNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD 448 (664)
T ss_pred cCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhh
Confidence 743210 0000 00000011111100 000 00 0 00236788999
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+|+|+.++. +.++|-+++..-... +..+|+.+
T Consensus 449 ~DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 449 HDVVFLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred CCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 999999996 678998887655543 44566554
No 291
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.35 E-value=0.046 Score=47.62 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=50.7
Q ss_pred EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 247 (398)
+-|+|.|.+++++++.+ +.+|++|.++|+++.. +..++-+. +.+.
T Consensus 1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~- 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP- 45 (136)
T ss_dssp EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence 46899999999999985 8999999999987421 11333322 2221
Q ss_pred hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296 (398)
Q Consensus 248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal 296 (398)
++.. +.+ .+.+++.+| ++++.-.|...|..+|++ .....|+
T Consensus 46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1111 111 456666666 888888999999999887 4455444
No 292
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.35 E-value=0.71 Score=46.70 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=47.2
Q ss_pred ccCCCeEEEEecC--------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 015895 162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233 (398)
Q Consensus 162 ~l~gktvGIIGlG--------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el 233 (398)
.++|++|+|+|.| ++.++.+..+ ..|||+|.+..|..-.-.+...+......+..| ..+....+++|.
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea 242 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA 242 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence 3889999999853 4456777776 589999999987631101111110000011112 223345789999
Q ss_pred hhcCCEEEEc
Q 015895 234 LREADVISLH 243 (398)
Q Consensus 234 l~~aDiV~l~ 243 (398)
++++|+|..-
T Consensus 243 ~~~aDvvyt~ 252 (357)
T TIGR03316 243 FKDADIVYPK 252 (357)
T ss_pred hCCCCEEEEC
Confidence 9999999764
No 293
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.19 Score=51.85 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=68.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~-aDiV 240 (398)
++.||++.|+|.|.+|.++|+.| ...|++|.++|.......+. .+ .+...+. .........+++.. +|+|
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLM 72 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEE
Confidence 36789999999999999999998 68999999999764321110 00 0112221 11111122344444 8988
Q ss_pred EEcc--CCC-hhh-------hhhccHH-HHhcC-CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 241 SLHP--VLD-KTT-------YHLINKE-RLATM-KKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 241 ~l~~--Plt-~~T-------~~li~~~-~~~~m-k~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+... |.+ +.- ..++.+. .+..+ +...+-|--+.|..--..-+...|+.
T Consensus 73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 8765 322 211 1123332 22233 44456666677888777767777764
No 294
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.32 E-value=0.11 Score=51.06 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=73.2
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
++|+|+|.|.||+-+|-+| ...|.+|..++|... ..+.+.+.-+-.+...+.. ..+.......+....+|+|++++-
T Consensus 3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence 5799999999999999998 467999999998652 2222111000001111110 000000111122467899999986
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD 297 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD 297 (398)
.. ++...+ +.....+.+++.+|-+--| +-.++.+.+.+...++.++..-
T Consensus 80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~~ 128 (305)
T PRK05708 80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASST 128 (305)
T ss_pred HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEee
Confidence 43 344433 3455567788887777544 4556677788776666665443
No 295
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.25 E-value=0.13 Score=53.43 Aligned_cols=132 Identities=22% Similarity=0.261 Sum_probs=78.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
..+|+|.|+|+|.-|.++|+.| ...|++|+++|.++.+. .+... ....+ ..+..-.-..+.+..+|+|+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~------~~~~~---i~~~~g~~~~~~~~~~d~vV 74 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP------LLLEG---IEVELGSHDDEDLAEFDLVV 74 (448)
T ss_pred ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh------hhccC---ceeecCccchhccccCCEEE
Confidence 4499999999999999999998 68999999999766541 01000 00011 11111111226678899999
Q ss_pred EccCCChhhh----------hhcc-HHHHhcC--CCCcEEEEcCCCchhcHHHHHHHHhc--------CCccEEEeccCC
Q 015895 242 LHPVLDKTTY----------HLIN-KERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFE 300 (398)
Q Consensus 242 l~~Plt~~T~----------~li~-~~~~~~m--k~gailIN~aRG~~vde~aL~~aL~~--------g~i~gAalDV~~ 300 (398)
...-..+.+. .+++ =+.|.+. +.-.+-|.-+-|..--+.-+...|++ |.|...++|+..
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~ 154 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLE 154 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhc
Confidence 8743322222 1122 2233332 22245555566776666666666654 566778899998
Q ss_pred CCCC
Q 015895 301 DEPY 304 (398)
Q Consensus 301 ~EP~ 304 (398)
+++.
T Consensus 155 ~~~~ 158 (448)
T COG0771 155 QAEP 158 (448)
T ss_pred ccCC
Confidence 7443
No 296
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.24 E-value=0.46 Score=52.51 Aligned_cols=165 Identities=20% Similarity=0.270 Sum_probs=109.6
Q ss_pred cCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 015895 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (398)
Q Consensus 108 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~ 187 (398)
..|+|.|+. -..+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus 152 ~~ip~f~DD---~~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~ 206 (752)
T PRK07232 152 MDIPVFHDD---QHGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA 206 (752)
T ss_pred cCCCeeccc---cchHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence 468999983 345677788888888872 34578899999999999999999998 56
Q ss_pred CCc---EEEEEcCChh------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895 188 FKM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258 (398)
Q Consensus 188 fG~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~ 258 (398)
.|. +++.+|+..- .....+...|. +. ....+|+|+++.+|+++-.- +.++|.++.
T Consensus 207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a----~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~ 270 (752)
T PRK07232 207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA----VD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM 270 (752)
T ss_pred cCCCcccEEEEcCCCeecCCCcccccHHHHHHh----cc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence 787 7888886521 00111111110 00 12258999999999887432 148899999
Q ss_pred HhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895 259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (398)
Q Consensus 259 ~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~ 323 (398)
++.|.+..++.=.|....- ..++.+ ....|.|.+.| -...|. +-.|+++-|-++-
T Consensus 271 v~~M~~~piifalsNP~~E~~p~~a~-~~~~~~i~atG---rs~~pn------Q~NN~~~FPgi~~ 326 (752)
T PRK07232 271 VKSMADNPIIFALANPDPEITPEEAK-AVRPDAIIATG---RSDYPN------QVNNVLCFPYIFR 326 (752)
T ss_pred HHHhccCCEEEecCCCCccCCHHHHH-HhcCCEEEEEC---CcCCCC------cccceeecchhhH
Confidence 9999999999999987752 222222 22223455544 112221 4468888887654
No 297
>PRK12862 malic enzyme; Reviewed
Probab=95.22 E-value=0.54 Score=52.12 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=109.1
Q ss_pred CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (398)
Q Consensus 109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f 188 (398)
+|+|.|+.- ..+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~~ 215 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VSL 215 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HHc
Confidence 599999843 45677788888888772 34578899999999999999999998 567
Q ss_pred Cc---EEEEEcCChh------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895 189 KM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (398)
Q Consensus 189 G~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~ 259 (398)
|. +++.+|+..- ..+..+...|. +. ....+|+|+++.+|+++-.- +.++|.++.+
T Consensus 216 G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v 279 (763)
T PRK12862 216 GVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEMV 279 (763)
T ss_pred CCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHHH
Confidence 87 7999985420 00111111111 10 01258999999999987433 1478999999
Q ss_pred hcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895 260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (398)
Q Consensus 260 ~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~ 323 (398)
+.|.+..++.=+|....- ..+..+++ ..|.|.+.|- ...| -+-.|+++-|-++-
T Consensus 280 ~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~ 334 (763)
T PRK12862 280 KKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFR 334 (763)
T ss_pred HHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCCC------Ccccceeeccchhh
Confidence 999999999999987642 22222222 2234555441 1112 14458889887764
No 298
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.21 E-value=0.11 Score=48.70 Aligned_cols=37 Identities=35% Similarity=0.452 Sum_probs=31.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~ 198 (398)
..|+.++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 4589999999999999999999985 5666 58888877
No 299
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.20 E-value=0.085 Score=53.81 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=63.0
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhcCCE
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADV 239 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~-ell~~aDi 239 (398)
...++|+|+|. |.+|+++.+.| ... ++++..+.+..+.- ..+.+.+ .++.. + . .....+++ +.++++|+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL-~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLL-ANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDA 107 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHH-HhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCE
Confidence 35568999998 99999999997 455 67888776543221 0000000 00000 0 0 00111222 22488999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~ 284 (398)
|++++|. ..+. +....|+.|..+|+.|..--.+.++.++
T Consensus 108 Vf~Alp~-~~s~-----~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381)
T PLN02968 108 VFCCLPH-GTTQ-----EIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381)
T ss_pred EEEcCCH-HHHH-----HHHHHHhCCCEEEEcCchhccCCcccch
Confidence 9999995 2333 3344456789999998766555554444
No 300
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.071 Score=56.07 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=67.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
+.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+. ++..+. .........+.++.+|+|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT 76 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence 5789999999999999999986 7999999999975432 221 111221 11111123455678999887
Q ss_pred ccCCChhhhh----------hccHHHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 243 HPVLDKTTYH----------LINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 243 ~~Plt~~T~~----------li~~~~~~-~m--------k~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+..-.+...- ++++-.+. .. +...+-|--+-|+.--..-+...|+.
T Consensus 77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 7543332211 22222221 11 12345566677887766667777765
No 301
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.10 E-value=0.45 Score=45.78 Aligned_cols=190 Identities=13% Similarity=0.093 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-----------E
Q 015895 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N 191 (398)
Q Consensus 123 vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~-----------~ 191 (398)
+|=-+++-+|+.+|- .|..|.+.++.|.|.|.-|-.+|+.+. ..++ +
T Consensus 4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~ 61 (254)
T cd00762 4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR 61 (254)
T ss_pred hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence 556677777777772 345788999999999999999999874 4444 6
Q ss_pred EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCChhhhhhccHHHHhcCC-
Q 015895 192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK- 263 (398)
Q Consensus 192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~~Plt~~T~~li~~~~~~~mk- 263 (398)
++.+|+..- +.+..+...+....+. .....+|.|+++ +.|+++-.. ...++|.++.++.|.
T Consensus 62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~ 130 (254)
T cd00762 62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE 130 (254)
T ss_pred EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence 888887621 0011111110000010 112358999999 999997533 225789999999998
Q ss_pred --CCcEEEEcCCCch---hcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHHH-----HHHH
Q 015895 264 --KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT-----REGM 332 (398)
Q Consensus 264 --~gailIN~aRG~~---vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ea-----~~~~ 332 (398)
+..++.=.|.... +..++.+++=+-..|.+.+.-.+.++-.-. ...-+-.|+++-|-++-....+ -+.|
T Consensus 131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m 210 (254)
T cd00762 131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV 210 (254)
T ss_pred cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence 8999999988765 233333333222234444442222221100 0123556999999876522211 1344
Q ss_pred HHHHHHHHHHHHc
Q 015895 333 ATLAALNVLGKIK 345 (398)
Q Consensus 333 ~~~~~~ni~~~l~ 345 (398)
...+++.+..+..
T Consensus 211 ~~aAA~aLA~~v~ 223 (254)
T cd00762 211 FLSAAEAIASSVT 223 (254)
T ss_pred HHHHHHHHHhhCC
Confidence 4455555555443
No 302
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.08 E-value=0.074 Score=53.37 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=58.8
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH-------------HH---HHHhhhhhhhhhcCCC-Cc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANGEQ-PV 222 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~~~-~~ 222 (398)
..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-+. .. ...+.....+++.... ..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 4689999999999999999999985 6677 899999863100 00 0000000111111100 00
Q ss_pred ccc----ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 223 ~~~----~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
... ...++.++++++|+|+.++- +.+++.++++...+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~ 140 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY 140 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence 000 11235677888998888875 567788887665543
No 303
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.05 E-value=0.13 Score=44.50 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=27.5
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~ 199 (398)
+|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCCC
Confidence 5899999999999999984 6776 799998764
No 304
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.04 E-value=0.18 Score=52.04 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=58.3
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcC
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREA 237 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e----ll~~a 237 (398)
.+..+++.|+|+|.+|+.+++.| ...|.+|++.|.++... +.+.+.+ .+ .........+.+. -+.++
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~-~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PN-TLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CC-CeEEECCCCCHHHHHhcCCccC
Confidence 34578999999999999999998 68999999999887542 2111100 01 0110111122222 25789
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
|.|+++++... .+++-......+....+++-+
T Consensus 299 ~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 299 DAFIALTNDDE--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CEEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence 99998888543 333333333445444444433
No 305
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.03 E-value=1.2 Score=45.77 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=115.1
Q ss_pred hcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 015895 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (398)
Q Consensus 107 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~ 186 (398)
+..|+|.|+.- ..+|=.+++-+|+.+| ..|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk---------------------~~gk~l~d~kiv~~GAGAAgiaia~~l-~ 219 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK---------------------LTGKKLKDQKIVINGAGAAGIAIADLL-V 219 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH---------------------HhCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence 45588888644 4567788888888777 245789999999999999999999998 7
Q ss_pred cCCc---EEEEEcCChhh--HHHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895 187 GFKM---NLIYYDLYQAT--RLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260 (398)
Q Consensus 187 ~fG~---~V~~~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~ 260 (398)
+.|+ +|+.+|+..-- ..+. ....+....... .. . .... ++.+..+|+++-+-- .+.+.++.++
T Consensus 220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~--~~-~--~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~ 288 (432)
T COG0281 220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIE--DT-G--ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK 288 (432)
T ss_pred HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHh--hh-c--cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence 8887 69999876311 0000 000000000000 00 0 0011 457889999875542 2899999999
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhcC-CccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHH-----HHHHHH
Q 015895 261 TMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT-----REGMAT 334 (398)
Q Consensus 261 ~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea-----~~~~~~ 334 (398)
.|.+..++.=.|-...-=.-..+.+...| .|-+-| -| +.|- +-.|+++-|.++-....+ -+.|-.
T Consensus 289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rs--d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~ 359 (432)
T COG0281 289 EMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RS--DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKI 359 (432)
T ss_pred HhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CC--CCcc-cccceeEcchhhhhhHhhccccCCHHHHH
Confidence 99999999888876532112222222222 222222 11 1121 567999999987532211 134444
Q ss_pred HHHHHHHHHHc
Q 015895 335 LAALNVLGKIK 345 (398)
Q Consensus 335 ~~~~ni~~~l~ 345 (398)
.+++.|.++.+
T Consensus 360 AAa~AiA~~~~ 370 (432)
T COG0281 360 AAAEAIADLAR 370 (432)
T ss_pred HHHHHHHhhcc
Confidence 55555555543
No 306
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.00 E-value=0.12 Score=52.62 Aligned_cols=89 Identities=24% Similarity=0.345 Sum_probs=61.0
Q ss_pred cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 015895 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (398)
Q Consensus 163 l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e 232 (398)
|.||||||+|+- .--..++++| +..|++|.+|||-....... . .+ ......++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~ 372 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE 372 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence 999999999984 4567788998 79999999999976542211 0 01 1334578999
Q ss_pred HhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 233 ll~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
.++.||+++++..- ++-+.+ +-+.+ .|| +.++++
T Consensus 373 ~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 373 ALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence 99999999998852 343433 33333 565 445554
No 307
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.99 E-value=0.22 Score=48.78 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=48.8
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC---CHHHHhh
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR 235 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sl~ell~ 235 (398)
++.||++.|+|.|..+++++-.+ ...|. +|.+++|+.. .+.+.+.+.+. ........+.... .+.+.+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 195 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA 195 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence 57889999999999999999877 45676 8999999853 23333222211 0000000111111 1233456
Q ss_pred cCCEEEEccCC
Q 015895 236 EADVISLHPVL 246 (398)
Q Consensus 236 ~aDiV~l~~Pl 246 (398)
++|+|+.++|.
T Consensus 196 ~aDivINaTp~ 206 (288)
T PRK12749 196 SADILTNGTKV 206 (288)
T ss_pred cCCEEEECCCC
Confidence 78999999885
No 308
>PLN02342 ornithine carbamoyltransferase
Probab=94.99 E-value=4.3 Score=40.93 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=62.0
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+.|++|+++|= .++-++.+..+ ..||++|....|..-.-.+...+. .+..+. ..+....++++.+++||+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv 263 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV 263 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence 488999999997 35677777765 589999998887532111111110 111111 1233457899999999999
Q ss_pred EEcc----CCChhh--------hhhccHHHHhcCCCCcEEEEc
Q 015895 241 SLHP----VLDKTT--------YHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 241 ~l~~----Plt~~T--------~~li~~~~~~~mk~gailIN~ 271 (398)
..-. -..++. .-.++++.++.+|+++++.-|
T Consensus 264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 8652 111110 123567777777777777665
No 309
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.96 E-value=0.2 Score=49.46 Aligned_cols=91 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhh-----cC
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA 237 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~-----~a 237 (398)
..++||||.|+||+..+..+.+.-+.++. ++|+++......+. ++.| +. ...+.+++++ +.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~G-----i~~~~~~ie~LL~~~~~~dI 71 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLG-----VATSAEGIDGLLAMPEFDDI 71 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcC-----CCcccCCHHHHHhCcCCCCC
Confidence 35799999999999977666443356654 56666543211111 1122 21 1357888884 58
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
|+|+.++|.. ... +-.....+.|..+|+-+
T Consensus 72 DiVf~AT~a~--~H~---e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 72 DIVFDATSAG--AHV---RHAAKLREAGIRAIDLT 101 (302)
T ss_pred CEEEECCCHH--HHH---HHHHHHHHcCCeEEECC
Confidence 8899999842 211 22233356788888876
No 310
>PLN02602 lactate dehydrogenase
Probab=94.96 E-value=0.38 Score=48.49 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|+|||.|.||+.+|-.++ +++.-++..+|.........-.+..... ...+. ..+....+.++ +++||+|+++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~--~~i~~~~dy~~-~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA-AFLPR--TKILASTDYAV-TAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh-hcCCC--CEEEeCCCHHH-hCCCCEEEECC
Confidence 69999999999999998763 2444589999987643222212211100 00000 11111134555 79999999884
Q ss_pred CCC--h-hhh-hhcc---------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895 245 VLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 245 Plt--~-~T~-~li~---------~~~~~~mk~gailIN~aRG~~vde~a 281 (398)
-.. + +|| .++. .+.+....+.+++|+++- ++|.-.
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN--Pvdv~t 161 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN--PVDVLT 161 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--chHHHH
Confidence 331 1 233 2221 123444567889999883 444443
No 311
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.95 E-value=0.25 Score=50.15 Aligned_cols=37 Identities=30% Similarity=0.251 Sum_probs=32.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~ 198 (398)
..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 4689999999999999999999984 6776 78889886
No 312
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.95 E-value=0.15 Score=52.58 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=48.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cc-cccCCHHHH-hhcCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TW-KRASSMDEV-LREADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~sl~el-l~~aDiV~l 242 (398)
|++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +...+ ..+.... +. .....++++ +.++|.|++
T Consensus 1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4799999999999999998 67899999999877542 11100 0110000 00 111235555 788999999
Q ss_pred ccCCCh
Q 015895 243 HPVLDK 248 (398)
Q Consensus 243 ~~Plt~ 248 (398)
+++...
T Consensus 72 ~~~~~~ 77 (453)
T PRK09496 72 VTDSDE 77 (453)
T ss_pred ecCChH
Confidence 998643
No 313
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.87 E-value=0.2 Score=54.19 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=62.7
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhcCCEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVI 240 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~---el-l~~aDiV 240 (398)
..++-|+|+|++|+.+|+.| ...|.++++.|.++... +. +++.+. +.-+....+.+ ++ +.+||.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence 35799999999999999998 68999999999987642 22 112221 11122223332 22 6789999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+++++..+++..++ ...+++.|...+|--+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99999755554443 34555666666666555
No 314
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.86 E-value=0.1 Score=55.79 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=57.7
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS 241 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~ 241 (398)
-++-|+|+|++|+.+|+.| +..|.+|++.|.+++.. +. .++.+. +.-+....+ ++++ ++++|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~--------~~~~g~-~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DE--------LRERGI-RAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHCCC-eEEEcCCCCHHHHHhcCccccCEEE
Confidence 4689999999999999998 68899999999987542 21 111121 111112223 2222 57899999
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
++++.+.++..++-. ...+.+...+|-
T Consensus 487 v~~~~~~~~~~iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 487 LTIPNGYEAGEIVAS--AREKRPDIEIIA 513 (558)
T ss_pred EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence 999976665555432 233345555553
No 315
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.84 E-value=0.2 Score=50.27 Aligned_cols=118 Identities=20% Similarity=0.253 Sum_probs=65.0
Q ss_pred eEEEEecChhHHHHHHHHHh---------cCCcEEE-EEcCChh---------hHHHHHHhhhhhhhhhcCCCC-c-ccc
Q 015895 167 TVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQA---------TRLEKFVTAYGQFLKANGEQP-V-TWK 225 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~---------~fG~~V~-~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~-~-~~~ 225 (398)
+|||+|+|.||+.+++.+.+ +.+.+|. +.|+... .....+. ...+... . ...
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~-------~~~~~~~~~~~~~ 76 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVK-------EETGKLADYPEGG 76 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHH-------hccCCcccCcccc
Confidence 79999999999999998732 2256755 4454211 1111111 1111000 0 001
Q ss_pred ccCCHHHHh--hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCc
Q 015895 226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (398)
Q Consensus 226 ~~~sl~ell--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i 291 (398)
...++++++ ...|+|+.++|....+...--.-....++.|.-+|...-+.+ ..-++|.++.++..+
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 124788887 468999999996544322211223455667777776544433 235667777776544
No 316
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.82 E-value=0.1 Score=49.85 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=62.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT- 223 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~- 223 (398)
..|++++|+|||+|.+|..+|+.|+ ..|. ++..+|...-.. + +++ .+.....+.+.... ...
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 4699999999999999999999985 5665 788887653210 0 000 00001111111100 000
Q ss_pred cc-cc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 224 WK-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 224 ~~-~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
+. .. .+.+++++++|+|+.++- +.+++..+++.....- .-+|..
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~ 153 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSG 153 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEe
Confidence 00 11 124567889999988884 5678888877655543 346654
No 317
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.82 E-value=0.1 Score=42.39 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=45.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~l 242 (398)
.++.|+|.|+.|++++....+..|++ +.++|..+... |..-.+...+.+++++.+. .|+-++
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii 68 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII 68 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence 46999999999999885443344543 35666655431 1111112223477887776 999999
Q ss_pred ccCCChhhhhhccH
Q 015895 243 HPVLDKTTYHLINK 256 (398)
Q Consensus 243 ~~Plt~~T~~li~~ 256 (398)
++|. +..+..+++
T Consensus 69 ~VP~-~~a~~~~~~ 81 (96)
T PF02629_consen 69 TVPA-EAAQEVADE 81 (96)
T ss_dssp ES-H-HHHHHHHHH
T ss_pred EcCH-HHHHHHHHH
Confidence 9994 344444433
No 318
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.78 E-value=0.37 Score=48.44 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=66.3
Q ss_pred CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|||||. .+|+.-++.++..- +.++. ++|+.... .+.+.+.| + +..+.+++|++++.|+++++
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~ 69 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV 69 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence 57999999 68999888773322 46655 46776643 33332222 2 12357899999999999999
Q ss_pred cCCC-hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895 244 PVLD-KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV 294 (398)
Q Consensus 244 ~Plt-~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA 294 (398)
+|.+ +...|. +-..+.++.|.-++.=-=-..-+.++|+++.++..+.-.
T Consensus 70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9852 222221 223334455544333211113455668888877655544
No 319
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.68 E-value=0.31 Score=50.61 Aligned_cols=112 Identities=22% Similarity=0.226 Sum_probs=68.5
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... . +...+.. .... .. +-+..+|+|+
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv 70 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV 70 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence 47789999999999999999987 799999999997644321 1 1112221 1111 11 2346899887
Q ss_pred Ecc--CCC-h----h---hhhh----ccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHP--VLD-K----T---TYHL----INK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~--Plt-~----~---T~~l----i~~-~~~~~-m-----k~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
..- |.+ + . ++.. +.+ +.+.. + +...+-|.=+.|..--..-|...|+.
T Consensus 71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 643 322 1 1 1111 332 22222 2 33456677788998877777777775
No 320
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.68 E-value=0.16 Score=50.14 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH-------------HhhhhhhhhhcCCC-Cc-cc---
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF-------------VTAYGQFLKANGEQ-PV-TW--- 224 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~---~~~~-------------~~~~~~~~~~~~~~-~~-~~--- 224 (398)
+|.|+|.|.+|..+|+.|+ ..|. ++..+|...-.. -+++ .+.....+++.... .. ++
T Consensus 1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 5899999999999999984 6675 677777442110 0000 00000111111100 00 00
Q ss_pred -----------------cccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 225 -----------------KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 225 -----------------~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.....++++++++|+|+.++ .+.++|.+++.--...-| .+|+.+.
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal 141 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL 141 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence 01123678999999999999 468889888765555433 6676544
No 321
>PRK08328 hypothetical protein; Provisional
Probab=94.67 E-value=0.11 Score=49.11 Aligned_cols=106 Identities=23% Similarity=0.225 Sum_probs=60.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhh-------hh---------hhhhhcCCCCcc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTA-------YG---------QFLKANGEQPVT 223 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~~ 223 (398)
..|++++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-+. ..+... .+ ..+..... ...
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~ 99 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIK 99 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhCC-CCE
Confidence 4689999999999999999999985 5665 688888654211 000000 00 00111000 000
Q ss_pred cc------ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 224 ~~------~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.. ...+++++++++|+|+.++-. .+++.++++-..+ .+.-+|+.+-
T Consensus 100 v~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~~ 151 (231)
T PRK08328 100 IETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGAV 151 (231)
T ss_pred EEEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEee
Confidence 00 112356678888888888764 5677777653332 3455666543
No 322
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.63 E-value=0.18 Score=46.67 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~ 199 (398)
..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence 4699999999999999999999985 6776 688888764
No 323
>PRK15076 alpha-galactosidase; Provisional
Probab=94.62 E-value=0.2 Score=52.00 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=71.3
Q ss_pred CeEEEEecChhHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~--~la--~~f-G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
++|+|||.|.+|...+- .++ .++ +.+|+.||....... ..+... .....+ ....+....++.+.++.||
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD 77 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence 47999999999955443 222 244 459999999875421 111111 111112 1223333467889999999
Q ss_pred EEEEccCCC--h--------------------hhh-------hhcc-------HHHHhcCCCCcEEEEcCCCchhcHHHH
Q 015895 239 VISLHPVLD--K--------------------TTY-------HLIN-------KERLATMKKEAILVNCSRGPVIDEVAL 282 (398)
Q Consensus 239 iV~l~~Plt--~--------------------~T~-------~li~-------~~~~~~mk~gailIN~aRG~~vde~aL 282 (398)
+|+.++-.. . +|. .+-+ .+.+....|++++||.+-.-=+-..++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 998776542 1 110 0001 123444568999999988664555555
Q ss_pred HHHHhcCCccEEE
Q 015895 283 VEHLKQNPMFRVG 295 (398)
Q Consensus 283 ~~aL~~g~i~gAa 295 (398)
. .+...++.|.+
T Consensus 158 ~-~~~~~rviG~c 169 (431)
T PRK15076 158 N-RYPGIKTVGLC 169 (431)
T ss_pred h-cCCCCCEEEEC
Confidence 5 33344565553
No 324
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=94.60 E-value=0.13 Score=52.44 Aligned_cols=105 Identities=19% Similarity=0.317 Sum_probs=67.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-------HHHHHHh---hhhhhhhhcCCCCccccccCCH
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------RLEKFVT---AYGQFLKANGEQPVTWKRASSM 230 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~sl 230 (398)
.++.|+||.|=|+|++|+..|+.+ ...|++|++.|.+... ..+.+.+ .........+ .+.. +-
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~~i-~~ 275 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AEYI-TN 275 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ceEc-cc
Confidence 459999999999999999999997 5789999998766541 0000000 0000000011 1112 22
Q ss_pred HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID 278 (398)
Q Consensus 231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd 278 (398)
++++ ..||+.+=| .+.+.|+.+...++|.. +++-.+-|++-.
T Consensus 276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~ 318 (411)
T COG0334 276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP 318 (411)
T ss_pred cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH
Confidence 4554 478988644 45788988888888877 788888887653
No 325
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.58 E-value=0.13 Score=46.53 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=52.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh---HHHHH----------HhhhhhhhhhcCCCCcccc------c
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT---RLEKF----------VTAYGQFLKANGEQPVTWK------R 226 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~------~ 226 (398)
+|+|||+|.+|..+|+.|+ ..|. ++..+|...-. ..+++ .+.....+.+.... ..+. .
T Consensus 1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~-v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF-VKIEAINIKID 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC-CEEEEEEeecC
Confidence 5899999999999999985 5676 58888877510 00000 00000111111100 0010 0
Q ss_pred cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 227 ~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
..+++++++++|+|+.++- +.+++..++....+.
T Consensus 79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~ 112 (174)
T cd01487 79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN 112 (174)
T ss_pred hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 1235577888898888853 567777666655554
No 326
>PRK12861 malic enzyme; Reviewed
Probab=94.56 E-value=0.75 Score=50.88 Aligned_cols=163 Identities=19% Similarity=0.224 Sum_probs=107.5
Q ss_pred CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188 (398)
Q Consensus 109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f 188 (398)
.|+|.|+. -..+|=.+++-+++.+|- .|+.+...+|.|.|.|.-|-.+|+.+ ...
T Consensus 157 ~ipvf~DD---~qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~ 211 (764)
T PRK12861 157 KIPVFHDD---QHGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL 211 (764)
T ss_pred CCCeeccc---cchHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence 79999984 345677788888888872 34578899999999999999999988 577
Q ss_pred Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895 189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259 (398)
Q Consensus 189 G~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~ 259 (398)
|. +++.+|+..- +. +..+...|. +. ....+|.|+++.+|+++-.- +.++|.++.+
T Consensus 212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a----~~-------~~~~~L~eai~~advliG~S-----~~g~ft~e~v 275 (764)
T PRK12861 212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA----QE-------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML 275 (764)
T ss_pred CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH----hh-------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence 87 7898984420 00 111111111 00 11258999999999886432 2589999999
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhc-CC-ccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQ-NP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323 (398)
Q Consensus 260 ~~mk~gailIN~aRG~~vde~aL~~aL~~-g~-i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~ 323 (398)
+.|.+..++.=.|.... |-.=.++.++ |+ |.+-+- ...| -+-.|+++-|-++-
T Consensus 276 ~~Ma~~PIIFaLsNPtp--E~~pe~a~~~~g~aivaTGr---s~~p------nQ~NN~l~FPgi~~ 330 (764)
T PRK12861 276 KAMAARPLILALANPTP--EIFPELAHATRDDVVIATGR---SDYP------NQVNNVLCFPYIFR 330 (764)
T ss_pred HHhccCCEEEECCCCCc--cCCHHHHHhcCCCEEEEeCC---cCCC------CccceeeecchhhH
Confidence 99999999999988764 2111122333 33 322211 1112 24568999998764
No 327
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=94.56 E-value=0.28 Score=49.28 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=48.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
.+.|++|+++|= .++..+.+..+ ..+|++|.+..|.. +.......+.+ ....| ..+....+++|.+++|
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~eav~~a 223 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEEN---CEVSG---GSVLVTDDVDEAVKDA 223 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHH---HHhcC---CeEEEEcCHHHHhCCC
Confidence 589999999997 67888888876 58999999998753 11111111100 00111 1233457899999999
Q ss_pred CEEEE
Q 015895 238 DVISL 242 (398)
Q Consensus 238 DiV~l 242 (398)
|+|..
T Consensus 224 Dvvy~ 228 (338)
T PRK02255 224 DFVYT 228 (338)
T ss_pred CEEEE
Confidence 99987
No 328
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.50 E-value=0.2 Score=51.69 Aligned_cols=71 Identities=14% Similarity=0.081 Sum_probs=52.5
Q ss_pred ccccCCCeEEEEec----------ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 015895 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228 (398)
Q Consensus 160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (398)
+.++.|++|+|+|+ ..-...+++.| ...| ++|.+|||........ .. . .....
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~-----------~~---~-~~~~~ 378 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK-----------LD---G-LVTLV 378 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh-----------cc---C-ceeeC
Confidence 45689999999998 45778899998 6775 9999999985431110 00 0 01235
Q ss_pred CHHHHhhcCCEEEEccCC
Q 015895 229 SMDEVLREADVISLHPVL 246 (398)
Q Consensus 229 sl~ell~~aDiV~l~~Pl 246 (398)
+++|.++.||.|+++++-
T Consensus 379 ~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 379 SLDEALATADVLVMLVDH 396 (415)
T ss_pred CHHHHHhCCCEEEECCCC
Confidence 789999999999999985
No 329
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.49 E-value=0.17 Score=54.89 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=60.5
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV 240 (398)
..++-|+|+|++|+.+|+.| +..|.++++.|.++... +. +++.+ .+.-+....+.+-+ ++++|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g-~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ET--------LRKFG-MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhcC-CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46799999999999999998 68899999999887642 21 11222 12222222333322 5689999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+++++.++.+..++ ...+.+.|...++--+|
T Consensus 469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 469 INAIDDPQTSLQLV--ELVKEHFPHLQIIARAR 499 (621)
T ss_pred EEEeCCHHHHHHHH--HHHHHhCCCCeEEEEEC
Confidence 99998655444432 34444555655554333
No 330
>PRK06153 hypothetical protein; Provisional
Probab=94.48 E-value=0.2 Score=51.05 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=63.0
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--------------HH-H--HHHhhhhhhhhhcCCCCcc
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RL-E--KFVTAYGQFLKANGEQPVT 223 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~--------------~~-~--~~~~~~~~~~~~~~~~~~~ 223 (398)
.|++++|+|||+|.+|+.++..|+ ..|. ++..+|...-. .+ . ...+.+...+..... ...
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I~ 250 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GIV 250 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eEE
Confidence 689999999999999999999986 5564 88888865211 00 0 011111111111110 000
Q ss_pred c--ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 224 W--KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 224 ~--~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
. ... ..+ +.+..||+|+.|+.. .+++.++++..... +.-+|+++-|-
T Consensus 251 ~~~~~I~~~n~-~~L~~~DiV~dcvDn-~~aR~~ln~~a~~~---gIP~Id~G~~l 301 (393)
T PRK06153 251 PHPEYIDEDNV-DELDGFTFVFVCVDK-GSSRKLIVDYLEAL---GIPFIDVGMGL 301 (393)
T ss_pred EEeecCCHHHH-HHhcCCCEEEEcCCC-HHHHHHHHHHHHHc---CCCEEEeeecc
Confidence 0 011 112 346788988888874 56677777665553 55677776653
No 331
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.12 Score=54.01 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=68.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.++.++++.|+|+|.+|+++|+.| ...|++|.++|+..... ..+. +..|. .+.......+.+..+|+|
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l-------~~~gi---~~~~~~~~~~~~~~~d~v 78 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLI-------EVTGV---ADISTAEASDQLDSFSLV 78 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHH-------HhcCc---EEEeCCCchhHhcCCCEE
Confidence 357889999999999999999997 68999999999765432 1111 11121 111111223445788998
Q ss_pred EEcc--CC-Chhhh-------hhccHHHHh-c------C--CCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 241 SLHP--VL-DKTTY-------HLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 241 ~l~~--Pl-t~~T~-------~li~~~~~~-~------m--k~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
+... |. +++.. .++.+-.+. . + +...+-|-=+-|..--..-|...|+..
T Consensus 79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 7763 32 22211 122322232 1 1 223455666678877777677777753
No 332
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.47 E-value=0.25 Score=48.94 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=56.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCC
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD 238 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aD 238 (398)
..|++|.|+|.|.+|...++.+ +..|+ +|++.+++.... +. .++.|....-.....++.++.. ..|
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~~--------a~~lGa~~vi~~~~~~~~~~~~~~g~~D 237 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-SL--------AREMGADKLVNPQNDDLDHYKAEKGYFD 237 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-HH--------HHHcCCcEEecCCcccHHHHhccCCCCC
Confidence 3588999999999999999975 89998 688888776432 11 1122321111001112333332 257
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+|+-++.. +.+ + ...+..+++|..++.++.
T Consensus 238 ~vid~~G~-~~~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVSGH-PSS---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECCCC-HHH---H-HHHHHHhhcCCEEEEEcc
Confidence 77766642 111 1 345666777777777754
No 333
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.43 E-value=0.13 Score=53.49 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=71.0
Q ss_pred ccCCCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
..+++++.|+|+|..|.+ +|+.| +..|++|.++|....+..+. +...+. ......+ .+.+..+|+|
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi---~~~~~~~-~~~~~~~d~v 70 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGA---IIFIGHD-AENIKDADVV 70 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHCCCCCEE
Confidence 356789999999999999 79987 79999999999876432222 112221 1111112 3445689999
Q ss_pred EEcc--CCC-hhhh-------hhccHH-HHhc-CC-CCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 241 SLHP--VLD-KTTY-------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 241 ~l~~--Plt-~~T~-------~li~~~-~~~~-mk-~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
++.. |.+ +..+ .++++- .+.. ++ ...+-|--+.|..--..=+...|+...
T Consensus 71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 7764 322 2211 234433 3333 33 245666667788877776777776543
No 334
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=94.39 E-value=0.15 Score=50.83 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=53.4
Q ss_pred eEEEEecChhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhh-------hhcC------CCCccccccCC
Q 015895 167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFL-------KANG------EQPVTWKRASS 229 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~s 229 (398)
+|||+|+|+||+.+.|.+ ... +.+|...+.....+...|.-.|++.- +..+ .....+....+
T Consensus 1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 489999999999999986 443 36776665433333223333333210 1000 01111111224
Q ss_pred HHHH-h--hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 230 l~el-l--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
++++ + ...|+|+.|.+..- ++ +.....++.|+..|.++-
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~-s~----e~a~~~l~aGa~~V~~Sa 121 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYG-NR----EQGERHIRAGAKRVLFSH 121 (325)
T ss_pred hhhccccccCCCEEEEccchhc-cH----HHHHHHHHcCCeEEEecC
Confidence 4443 2 47899998887421 11 223344566777777663
No 335
>PRK05086 malate dehydrogenase; Provisional
Probab=94.37 E-value=0.21 Score=49.59 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhcCCEE
Q 015895 166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~--~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~ell~~aDiV 240 (398)
++|+|||. |.||+.+|..++. .++..+..+|+........ .+ +.+.. ....... ..++.+.+++||+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~a-lD-----l~~~~-~~~~i~~~~~~d~~~~l~~~DiV 73 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVA-VD-----LSHIP-TAVKIKGFSGEDPTPALEGADVV 73 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCccee-hh-----hhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence 58999999 9999999977633 4566889999764321000 01 01101 0011111 24666778999999
Q ss_pred EEccCCChh---hh-hhc------cHH---HHhcCCCCcEEEEcCCC
Q 015895 241 SLHPVLDKT---TY-HLI------NKE---RLATMKKEAILVNCSRG 274 (398)
Q Consensus 241 ~l~~Plt~~---T~-~li------~~~---~~~~mk~gailIN~aRG 274 (398)
+++.-.... ++ .++ -++ .+....+.+++++++-.
T Consensus 74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 988754221 11 122 122 33334678899998764
No 336
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.14 Score=53.91 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=68.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++.+++|.|+|+|..|.++|+.| +..|.+|.++|..... .... +...+. ...+.......+.+..+|+|
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~~-~~~~~~g~~~~~~~~~~d~v 73 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAELP-DAEFVGGPFDPALLDGVDLV 73 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhcC-CcEEEeCCCchhHhcCCCEE
Confidence 36688999999999999999997 7999999999976532 1111 111110 01111111123456789999
Q ss_pred EEc--cCCC-----hhh-------hhhccH-HHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 241 SLH--PVLD-----KTT-------YHLINK-ERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 241 ~l~--~Plt-----~~T-------~~li~~-~~~~-~m--------k~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
+.. +|.+ |.- ..++.+ +.+. .+ ++..+-|-=+-|..--..-|...|+...
T Consensus 74 v~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498)
T PRK02006 74 ALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498)
T ss_pred EECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 886 4433 211 112222 2221 12 2234556666788776666777776533
No 337
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.25 E-value=0.55 Score=43.75 Aligned_cols=98 Identities=20% Similarity=0.166 Sum_probs=58.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-H----hhcC
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V----LREA 237 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-l----l~~a 237 (398)
..|.+|.|.|.|.+|+.+++.+ +..|.+|++.+++.... +. .. ..+....-.....+..+ + -...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AK-------ELGADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HH-------HhCCceeccCCcCCHHHHHHHhcCCCC
Confidence 3578999999999999999985 88999999998875432 11 11 11111000000011111 1 2457
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
|+++.+++... .-...+..|+++..+++++...
T Consensus 203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence 88887776311 1244567778888888876643
No 338
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.20 E-value=0.34 Score=47.72 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=57.2
Q ss_pred EEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEEEc
Q 015895 168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 168 vGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
|+|||.|.+|..+|-.++ ..| .++..+|+........-.+ +.+.... ........+ .+.++.||+|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 589999999999998874 455 5899999976542211111 1111110 011111234 3568999999998
Q ss_pred cCCCh---hhh--------hhcc--HHHHhcCCCCcEEEEcCC
Q 015895 244 PVLDK---TTY--------HLIN--KERLATMKKEAILVNCSR 273 (398)
Q Consensus 244 ~Plt~---~T~--------~li~--~~~~~~mk~gailIN~aR 273 (398)
..... ++| .++. ...+....|.+++|+.+-
T Consensus 74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 76421 122 1111 123444458899999883
No 339
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.14 E-value=0.19 Score=47.95 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=58.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT- 223 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~- 223 (398)
..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-.. + +++ .+.....+++.... ...
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 4589999999999999999999985 5564 677887654221 0 000 00000111111100 000
Q ss_pred c-ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 224 W-KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 224 ~-~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
. ... ..++++++++|+|+.++- +.+++..+++...+.
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA 138 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence 0 011 235677888999888884 567888887665554
No 340
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.10 E-value=0.23 Score=50.50 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=60.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCC-CCcc-
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGE-QPVT- 223 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~-~~~~- 223 (398)
..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-.. + ++ ..+....++.+... ....
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 4699999999999999999999984 6775 888888762110 0 00 00011111111111 0000
Q ss_pred c-c--ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 224 W-K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 224 ~-~--~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
. . ...+.+++++++|+|+.|+- +.+++.++++.....
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~ 155 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT 155 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 0 11245678899999987775 578888888755443
No 341
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.08 E-value=0.31 Score=47.78 Aligned_cols=91 Identities=13% Similarity=0.224 Sum_probs=52.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l 242 (398)
.++||||.|+||+..+..+.+.-++++. ++|+++......+. ++.|. . ....+.+++++ +.|+|++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi---~-~~~~~~e~ll~~~dIDaV~i 70 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGV---K-TSAEGVDGLLANPDIDIVFD 70 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence 3799999999999987665333356655 46766543211111 11221 1 12346788875 5788999
Q ss_pred ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 243 HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 243 ~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
++|....- +-....++.|..+|+-+
T Consensus 71 aTp~~~H~-----e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 71 ATSAKAHA-----RHARLLAELGKIVIDLT 95 (285)
T ss_pred CCCcHHHH-----HHHHHHHHcCCEEEECC
Confidence 99953221 12233345566665543
No 342
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.06 E-value=0.3 Score=47.84 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
....|+++.|+|.|-.+++++..| ...|. +|.+++|+.+. .+++.+.+ .+.+. ........+++.. .++|+
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~----~~~~~-~~~~~~~~~~~~~-~~~dl 193 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLF----GELGA-AVEAAALADLEGL-EEADL 193 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHh----hhccc-ccccccccccccc-cccCE
Confidence 357899999999999999999998 57884 89999998865 22222222 11110 0001111122221 26999
Q ss_pred EEEccCCChhhh---hhccHHHHhcCCCCcEEEEcCCC
Q 015895 240 ISLHPVLDKTTY---HLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 240 V~l~~Plt~~T~---~li~~~~~~~mk~gailIN~aRG 274 (398)
|+.++|..-.-. .+++ ...++++.++.|+--.
T Consensus 194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~ 228 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYN 228 (283)
T ss_pred EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence 999999643221 0222 4445566666665443
No 343
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.75 Score=48.03 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=69.2
Q ss_pred ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
+..+.++++.|||.|.+|.++|+.| ...|.+|.++|...........+ .++..|.. +..-.... ....+|+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~gv~---~~~~~~~~-~~~~~D~ 81 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALGAT---VRLGPGPT-LPEDTDL 81 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcCCE---EEECCCcc-ccCCCCE
Confidence 3467899999999999999999987 68999999999765322111101 12222311 11111111 3456899
Q ss_pred EEEccCCChhhhh----------hccH-HHH-hcCCC----CcEEEEcCCCchhcHHHHHHHHhc
Q 015895 240 ISLHPVLDKTTYH----------LINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 240 V~l~~Plt~~T~~----------li~~-~~~-~~mk~----gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|+++.-..+.+.- ++++ +.+ ..+.+ ..+-|--+.|..--..=|...|+.
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 9887633332221 2222 222 33422 245666677887766666777764
No 344
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.00 E-value=0.29 Score=45.66 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=31.9
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
+.||++.|.|. |.||+.+++.| ...|++|++.+++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~ 41 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA 41 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence 67899999996 99999999998 578999998887653
No 345
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=93.93 E-value=6.1 Score=39.68 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
.+.|++|+++|=+ ++.++.+..+ ..||++|.+..|..-.-.+.+.+.........| ..+....++++.++++|+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv 228 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF 228 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence 4789999999976 7889988876 589999998877531100111110000011112 113334689999999999
Q ss_pred EEEcc----CCChh---h------hhhccHHHHhcC-CCCcEEEEc
Q 015895 240 ISLHP----VLDKT---T------YHLINKERLATM-KKEAILVNC 271 (398)
Q Consensus 240 V~l~~----Plt~~---T------~~li~~~~~~~m-k~gailIN~ 271 (398)
|..-. ....+ . .--++++.++.+ |+++++.-|
T Consensus 229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 97542 11000 1 112466777764 677777776
No 346
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.92 E-value=0.11 Score=55.95 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=49.1
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
....|+|||||-|..|+.+++.+ +.+|++|+++|+.+..-...+.+. .- ...+.....+.++++++|+|+
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~-------~~--v~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAAR-------HV--VGSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCce-------ee--eCCCCCHHHHHHHHHHCCEEE
Confidence 47889999999999999999985 789999999998764211111100 00 000111122566678899997
Q ss_pred EccCC
Q 015895 242 LHPVL 246 (398)
Q Consensus 242 l~~Pl 246 (398)
.....
T Consensus 89 ~e~e~ 93 (577)
T PLN02948 89 VEIEH 93 (577)
T ss_pred EecCC
Confidence 66443
No 347
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.15 Score=53.27 Aligned_cols=116 Identities=19% Similarity=0.186 Sum_probs=68.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l 242 (398)
+.||+++|+|+|.-|.++|+.| ...|++|+++|........... .++..+. ......+ .+.+.++|+|+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~---~~~~~~~-~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL---LVETEAS-AQRLAAFDVVVK 75 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence 5688999999999999999998 7999999999965432211100 0111110 0111112 355678999977
Q ss_pred cc--CCC-hhhh-------hhccHHH--Hhc-CC-----CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 243 HP--VLD-KTTY-------HLINKER--LAT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 243 ~~--Plt-~~T~-------~li~~~~--~~~-mk-----~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
.. |.+ +.-+ .++++-. +.. ++ ...+-|--+.|..--..-+...|+.
T Consensus 76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 64 332 2111 1344333 333 32 2456676677887777767777764
No 348
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.83 E-value=0.18 Score=50.69 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=53.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcC-CcEEEE-EcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEE
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI 240 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-ll~~aDiV 240 (398)
++|+|+|. |.+|+.+++.+. .. ++++.+ .++.... .... .+ ..+. +..... ..++++ ...++|+|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~---~~-~~~~--~~~~~~---~~~~~~~~~~~vD~V 72 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSD---VH-PHLR--GLVDLV---LEPLDPEILAGADVV 72 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHH---hC-cccc--cccCce---eecCCHHHhcCCCEE
Confidence 58999997 999999999984 55 677655 4532211 1111 00 0000 000001 122222 45789999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v 277 (398)
++|+|.. ....+. ....+.|..+||.|-.==.
T Consensus 73 f~alP~~-~~~~~v----~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 73 FLALPHG-VSMDLA----PQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred EECCCcH-HHHHHH----HHHHhCCCEEEECCcccCC
Confidence 9999953 222222 1223579999999854333
No 349
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=93.78 E-value=0.41 Score=47.27 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=63.9
Q ss_pred ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
.+.|++|.++|-| ++.++.+..+ ..||++|.+..|..-...+.+.+. .+..| ..+....++++.++.||
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD 218 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD 218 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence 4889999999995 9999999987 689999999887542111111110 11112 12334578999999999
Q ss_pred EEEEccCC-----Chhh------hhhccHHHHhcCCCCcEEEEc
Q 015895 239 VISLHPVL-----DKTT------YHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 239 iV~l~~Pl-----t~~T------~~li~~~~~~~mk~gailIN~ 271 (398)
+|..---. ..+. .--++++.++.+|+++++.-|
T Consensus 219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc 262 (301)
T TIGR00670 219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP 262 (301)
T ss_pred EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence 99753110 0001 112456667777777777654
No 350
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.71 E-value=2.2 Score=42.36 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=47.4
Q ss_pred cCCCeEEEEec---ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 163 l~gktvGIIGl---G~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
+.|.+|+++|= +++..+.+..+ ..||+ +|.+..|..-. .. ......+....++++.++.+|
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD 219 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD 219 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence 78999999998 59999999987 68999 99988774310 00 000012334578999999999
Q ss_pred EEEE
Q 015895 239 VISL 242 (398)
Q Consensus 239 iV~l 242 (398)
+|..
T Consensus 220 vvy~ 223 (310)
T PRK13814 220 VIVT 223 (310)
T ss_pred EEEE
Confidence 9975
No 351
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=93.68 E-value=0.43 Score=49.40 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=61.9
Q ss_pred ccccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895 160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (398)
Q Consensus 160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 229 (398)
+..+.|++|+|+|+ ..-+..+++.| ...|.+|.+|||........ +..+ ...
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~---------~~~~--------~~~ 370 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR---------REYG--------IIP 370 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH---------HhcC--------ccc
Confidence 45689999999999 46788999998 68999999999984321110 0000 011
Q ss_pred HHH-HhhcCCEEEEccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCch
Q 015895 230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV 276 (398)
Q Consensus 230 l~e-ll~~aDiV~l~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~~ 276 (398)
+++ .++.||.|++++.- ++-+. ++-+.+. .||...++||+ |+-+
T Consensus 371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 222 36789999999974 33332 4544444 45545688884 5443
No 352
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.67 E-value=0.21 Score=53.19 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=34.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.++.+|++.|+|.|.+|++++..| ...|++|++++|+...
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~ 414 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER 414 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 457899999999999999999998 5789999999987643
No 353
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.63 E-value=0.12 Score=48.11 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEEcc
Q 015895 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l~~ 244 (398)
|.|+|. |.+|+.+++.|. .-+.+|.+.-|..+...... ++..|..-+ .+....++.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence 678996 999999999984 58899999888775432211 122222111 1112345778899999999999
Q ss_pred CCCh-----hhhhhccHHHHhcC
Q 015895 245 VLDK-----TTYHLINKERLATM 262 (398)
Q Consensus 245 Plt~-----~T~~li~~~~~~~m 262 (398)
|... ....++++..-+..
T Consensus 73 ~~~~~~~~~~~~~li~Aa~~agV 95 (233)
T PF05368_consen 73 PPSHPSELEQQKNLIDAAKAAGV 95 (233)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHT-
T ss_pred CcchhhhhhhhhhHHHhhhcccc
Confidence 9541 23455555444433
No 354
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.49 E-value=0.29 Score=49.44 Aligned_cols=98 Identities=26% Similarity=0.208 Sum_probs=57.6
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK 225 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~ 225 (398)
..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. + +++ .+.....+++.... ..+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~ 101 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVT 101 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEE
Confidence 4699999999999999999999985 6665 788888764110 0 000 00001111111110 0111
Q ss_pred ----c--cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 226 ----~--~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
. ..+..++++.+|+|+.++- +.+++.+++....+.
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~ 142 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL 142 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 1 1224567888998888875 467777777654443
No 355
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.47 E-value=6.3 Score=39.13 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=48.7
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh-H-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
.+.|++|++||- +++..+.+..+ ..||++|.+..|..-. . .+...+. ....+ .+....++++.+++||
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~----~~~~g----~i~~~~d~~~av~~aD 220 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVER----AKKKG----TLSWEMNLHKAVSHAD 220 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHH----HHhcC----CeEEEeCHHHHhCCCC
Confidence 478999999998 78999998886 5899999999885421 1 1110000 01111 1222468999999999
Q ss_pred EEEE
Q 015895 239 VISL 242 (398)
Q Consensus 239 iV~l 242 (398)
+|..
T Consensus 221 vvy~ 224 (311)
T PRK14804 221 YVYT 224 (311)
T ss_pred EEEe
Confidence 9976
No 356
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.46 E-value=0.28 Score=48.28 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=45.8
Q ss_pred CeEEEEecChhHHH-HHHHHHhcCC--c-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCE
Q 015895 166 QTVGVIGAGRIGSA-YARMMVEGFK--M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~~fG--~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDi 239 (398)
.++||||+|.|++. .+..+ +..+ + -|.++|+++.. .+.+.+.| +.. ..+.+++++++. .|+
T Consensus 4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA 70 (342)
T ss_pred eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence 47999999977754 66665 4554 3 45667888754 22222222 211 235789999986 589
Q ss_pred EEEccCCCh
Q 015895 240 ISLHPVLDK 248 (398)
Q Consensus 240 V~l~~Plt~ 248 (398)
|++++|..-
T Consensus 71 V~Iatp~~~ 79 (342)
T COG0673 71 VYIATPNAL 79 (342)
T ss_pred EEEcCCChh
Confidence 999999643
No 357
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=93.46 E-value=0.097 Score=52.40 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.0
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
||||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus 1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~ 33 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN 33 (352)
T ss_pred CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence 599999999999999985 789999999998764
No 358
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.48 Score=43.96 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=30.7
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~ 199 (398)
.+.+|++.|.|. |.||+.+|+.+ ...|++|+...++.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS 39 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence 367899999995 99999999998 57899988776544
No 359
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.45 E-value=0.25 Score=48.94 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=56.0
Q ss_pred eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCEEE
Q 015895 167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sl~ell~~aDiV~ 241 (398)
+|+|||.|.||+.+|-.++. ++.-++..+|.........-.+ +.+.... ..... ..+ .+.+++||+|+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence 58999999999999987642 4444899999875432211111 1111110 11111 234 45679999999
Q ss_pred EccCC--Ch-hh---hhhc--cHH-------HHhcCCCCcEEEEcCC
Q 015895 242 LHPVL--DK-TT---YHLI--NKE-------RLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~Pl--t~-~T---~~li--~~~-------~~~~mk~gailIN~aR 273 (398)
++.-. .+ +| ..++ |.+ .+..-.+++++|.++-
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 87543 22 34 2333 211 2333457788887654
No 360
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.45 E-value=0.36 Score=46.20 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.8
Q ss_pred cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 163 l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
+.||++.|.|.+ .||+++|+.++ ..|++|+..++.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence 789999999997 59999999985 689999988775
No 361
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=93.38 E-value=0.59 Score=46.60 Aligned_cols=177 Identities=16% Similarity=0.108 Sum_probs=97.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHh------cCCcEE--EEEcCChhhHHHHHHhhhhhhh---h--hcCCCCccccccCC
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYGQFL---K--ANGEQPVTWKRASS 229 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~------~fG~~V--~~~d~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~s 229 (398)
-.-++|+|||.|+=|+.+|+.++. .|..+| ++|+-....+.+.+.+..+..- + +.-..|.......+
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 344789999999999999997642 233334 4443322221122222111100 0 00111222334568
Q ss_pred HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc---------HHHHHHHHhc--CCccEE--Ee
Q 015895 230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---------EVALVEHLKQ--NPMFRV--GL 296 (398)
Q Consensus 230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd---------e~aL~~aL~~--g~i~gA--al 296 (398)
+.+.+.+||+++..+|-+ -+.. |-++...+.|+++..|.+.-|=-.. .+-+-++|.- +-+.|| |.
T Consensus 99 l~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~ 176 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS 176 (372)
T ss_pred HHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHH
Confidence 999999999999999952 2333 4467888899999999998763221 1123344432 233342 33
Q ss_pred ccCCCCCCC----------CC----CCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895 297 DVFEDEPYM----------KP----GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346 (398)
Q Consensus 297 DV~~~EP~~----------~~----~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g 346 (398)
.|...++.. .. .|++.|+..++.---..+.|- .-+..||.+.-.|
T Consensus 177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi-----~GaLKNVvAiaaG 235 (372)
T KOG2711|consen 177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEI-----CGALKNVVAIAAG 235 (372)
T ss_pred HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHH-----hhhHHhHHHHhhh
Confidence 455444421 11 367778777777544444431 2244666665544
No 362
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.35 E-value=0.27 Score=45.79 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
++.++++.|+|. |.||+++++.| ...|++|++.+++...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA 41 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 467899999996 89999999998 5779999999998754
No 363
>PLN02527 aspartate carbamoyltransferase
Probab=93.27 E-value=0.74 Score=45.58 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=60.7
Q ss_pred ccCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
++.|++|+++|-+ ++..+.+..+ ..| |++|.+..|..-.....+.+. ++..| ..+....++++.+++|
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSKG---VEWEESSDLMEVASKC 219 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHcC---CEEEEEcCHHHHhCCC
Confidence 3889999999975 6889988876 456 999988877431100111110 11112 2233456899999999
Q ss_pred CEEEEccCCChh-------h-----hhhccHHHHhcCCCCcEEEEc
Q 015895 238 DVISLHPVLDKT-------T-----YHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 238 DiV~l~~Plt~~-------T-----~~li~~~~~~~mk~gailIN~ 271 (398)
|+|....-..+. - .-.++++.++.+|+++++.-|
T Consensus 220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 999763311010 0 122455666666666666654
No 364
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.21 E-value=0.43 Score=46.67 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=49.2
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++.||++.|+|.|-.|++++-.| ...|+ +|.++||+..+. +.+.+.+.. ..+..........++++.+..+|+|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div 198 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV 198 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence 46689999999999999999987 46886 799999987542 222221100 0010000000011234456789999
Q ss_pred EEccCC
Q 015895 241 SLHPVL 246 (398)
Q Consensus 241 ~l~~Pl 246 (398)
+.++|.
T Consensus 199 INaTp~ 204 (283)
T PRK14027 199 VNATPM 204 (283)
T ss_pred EEcCCC
Confidence 999984
No 365
>PRK08223 hypothetical protein; Validated
Probab=93.20 E-value=0.3 Score=47.90 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=31.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~ 198 (398)
..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCC
Confidence 4589999999999999999999985 5664 67777765
No 366
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.20 E-value=0.45 Score=43.94 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=31.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~ 199 (398)
..|++++|.|+|+|.+|.++|+.|+ ..|. ++..+|...
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence 4589999999999999999999985 5665 588888664
No 367
>PLN02214 cinnamoyl-CoA reductase
Probab=93.20 E-value=0.46 Score=47.29 Aligned_cols=83 Identities=12% Similarity=-0.016 Sum_probs=48.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
.+++|++.|.|. |-||+.+++.| ...|.+|.+.++...............................+++++++.+|+|
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 467899999998 99999999998 5789999999876542111100000000000000000011223567788899998
Q ss_pred EEccC
Q 015895 241 SLHPV 245 (398)
Q Consensus 241 ~l~~P 245 (398)
+-+..
T Consensus 86 ih~A~ 90 (342)
T PLN02214 86 FHTAS 90 (342)
T ss_pred EEecC
Confidence 76653
No 368
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.18 E-value=0.66 Score=46.22 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=62.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~fG~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
++|+|||. |.||+.+|-.++. ++-- ++..+|..... ....-.+ +.+.. ..........+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence 48999999 9999999987642 2222 79999984322 1110011 01100 00000111134457789
Q ss_pred cCCEEEEccCC--Ch-hhh-hhc--cH-------HHHhcCC-CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 236 EADVISLHPVL--DK-TTY-HLI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 236 ~aDiV~l~~Pl--t~-~T~-~li--~~-------~~~~~mk-~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
+||+|+++.-. .+ +|| .++ |. ..+.... +.+++|.++ .++|.-.-+-.-.+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~s 142 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAMKNA 142 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHHHHc
Confidence 99999987543 22 232 122 11 1233334 588999986 56666664443333
No 369
>PRK04148 hypothetical protein; Provisional
Probab=93.13 E-value=0.36 Score=41.99 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=46.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
+++++.+||+| -|..+|+.| ...|.+|++.|.++... +.. +..+...........--++.+.+|+|-..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV-~~a--------~~~~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAV-EKA--------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 56789999999 999999998 58899999999988642 110 11111111111112234678889998666
Q ss_pred cCC
Q 015895 244 PVL 246 (398)
Q Consensus 244 ~Pl 246 (398)
=|-
T Consensus 85 rpp 87 (134)
T PRK04148 85 RPP 87 (134)
T ss_pred CCC
Confidence 553
No 370
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.04 E-value=0.13 Score=45.70 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=47.8
Q ss_pred EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEEcc
Q 015895 168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l~~ 244 (398)
|.|+|. |.+|+.+++.| ...|.+|++..|++++.... .+.... .+....++.+.++.+|.|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~~-----------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAEDS-----------PGVEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHHC-----------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhcccc-----------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence 578995 99999999998 68889999999987653210 010000 0111234667788999999999
Q ss_pred CCChh
Q 015895 245 VLDKT 249 (398)
Q Consensus 245 Plt~~ 249 (398)
+.+..
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 75443
No 371
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.98 E-value=0.69 Score=45.76 Aligned_cols=123 Identities=19% Similarity=0.325 Sum_probs=63.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCCc--EEEEEcCChh-hHHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~fG~--~V~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
++|+|+|. |.+|..+|..++ ..|. +|+.+|+... +.+. ...+.+.. +...+. ........+.+ .+++||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~-~~~~~~-~~~i~~~~d~~-~l~~aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDA-LAAAGI-DAEIKISSDLS-DVAGSDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhc-hhccCC-CcEEEECCCHH-HhCCCCEE
Confidence 57999998 999999999874 4443 6999998431 1111 10111000 000010 01111123444 48999999
Q ss_pred EEccCCCh---hhh-hh-------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH----HhcCCccEE
Q 015895 241 SLHPVLDK---TTY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRV 294 (398)
Q Consensus 241 ~l~~Plt~---~T~-~l-------i~--~~~~~~mk~gailIN~aRG~~vde~aL~~a----L~~g~i~gA 294 (398)
+++..... +++ .+ +. ...+....+.+++|..+ ..+|.-..+-. +...++.|.
T Consensus 77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence 99875321 121 11 11 12344445677777776 45554443222 334455554
No 372
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.96 E-value=0.35 Score=44.76 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=33.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
++.|+++.|.|. |.||+.+++.+ ...|++|++.+++...
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~ 41 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK 41 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 378899999998 78999999998 5789999999997653
No 373
>PRK06701 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.37 Score=46.77 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.4
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
..+.||++.|.|. |.||..+|++++ ..|++|+.+++...
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~ 81 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH 81 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence 4688999999995 889999999984 68999999987653
No 374
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=92.89 E-value=0.53 Score=45.36 Aligned_cols=122 Identities=23% Similarity=0.224 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 015895 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM------- 190 (398)
Q Consensus 122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f----G~------- 190 (398)
.+|=-+++-+|+.+|- .|+.|++.++.|+|.|.-|-.+|+.+. .. |.
T Consensus 3 GTaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~ 60 (255)
T PF03949_consen 3 GTAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARK 60 (255)
T ss_dssp HHHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHT
T ss_pred hhHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhc
Confidence 3566677888887773 345799999999999999999999874 44 65
Q ss_pred EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCChhhhhhccHHHHhcCC
Q 015895 191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMK 263 (398)
Q Consensus 191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a--DiV~l~~Plt~~T~~li~~~~~~~mk 263 (398)
+++.+|+..- +.+..+...|. +... + .....+|.|+++.+ |+++-+-- ..++|.++.++.|.
T Consensus 61 ~i~lvD~~Gll~~~r~~l~~~~~~~a----~~~~-~--~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma 129 (255)
T PF03949_consen 61 RIWLVDSKGLLTDDREDLNPHKKPFA----RKTN-P--EKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMA 129 (255)
T ss_dssp TEEEEETTEEEBTTTSSHSHHHHHHH----BSSS-T--TT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCH
T ss_pred cEEEEeccceEeccCccCChhhhhhh----ccCc-c--cccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHh
Confidence 5888886521 11111112221 1111 1 11124899999999 99986542 47889999999998
Q ss_pred C---CcEEEEcCCCch
Q 015895 264 K---EAILVNCSRGPV 276 (398)
Q Consensus 264 ~---gailIN~aRG~~ 276 (398)
+ ..++.=.|....
T Consensus 130 ~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 130 KHNERPIIFPLSNPTP 145 (255)
T ss_dssp HHSSSEEEEE-SSSCG
T ss_pred ccCCCCEEEECCCCCC
Confidence 8 899999998765
No 375
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.89 E-value=0.17 Score=52.00 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=29.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhH
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATR 202 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~ 202 (398)
.+|||.|||+||+.++|.+...++++|++ +||....+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 48999999999999999852247899888 67665443
No 376
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=92.73 E-value=0.58 Score=48.39 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=49.8
Q ss_pred ccCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895 162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237 (398)
Q Consensus 162 ~l~gktvGIIGlG---~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a 237 (398)
.+.|++|+++|-+ ++..+.+..+ ..+ ||+|.+..|..-.-.+.+.+. +...| ..+....+++|.+++|
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A 309 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA 309 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence 4899999999994 8999999876 455 999998877532111111111 11112 1233457899999999
Q ss_pred CEEEEcc
Q 015895 238 DVISLHP 244 (398)
Q Consensus 238 DiV~l~~ 244 (398)
|+|....
T Consensus 310 DVVYt~~ 316 (429)
T PRK11891 310 DVVYATR 316 (429)
T ss_pred CEEEEcC
Confidence 9998643
No 377
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=1.9 Score=44.62 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
+.+|++.|+|.|.+|.++|+.| ...|++|.++|...... ..+ ++... ....+......++.+..+|+|+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~--------l~~~~-~gi~~~~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ--------IGKMF-DGLVFYTGRLKDALDNGFDILA 72 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH--------Hhhcc-CCcEEEeCCCCHHHHhCCCEEE
Confidence 6789999999999999999997 68999999999765432 111 11100 0111111111234557899997
Q ss_pred EccCCChhhhh----------hcc-HHHHhc-CC---CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHPVLDKTTYH----------LIN-KERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~----------li~-~~~~~~-mk---~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
...--.++..- ++. .+.+.. ++ ...+-|-=+.|..--..=+...|+.
T Consensus 73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 76433322211 222 233333 32 2456666677887766667777765
No 378
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.64 E-value=0.44 Score=47.33 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=59.8
Q ss_pred eEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCEEE
Q 015895 167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS 241 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sl~ell~~aDiV~ 241 (398)
+|+|||. |.||..+|-.|+. .+.-++..+|..... ..-.+ +.+ ......... ..++.+.++.||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence 5899999 9999999987642 444589999986621 00011 111 111111111 113567889999999
Q ss_pred EccCCC--h-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcH
Q 015895 242 LHPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDE 279 (398)
Q Consensus 242 l~~Plt--~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde 279 (398)
++.... + .+| .++ | .+.+..-.|.+++|+++- ++|.
T Consensus 73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 876532 2 122 122 1 123444578999999876 4554
No 379
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=92.55 E-value=0.28 Score=48.70 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.5
Q ss_pred CeEEEEecChhHHHHHHHHHhcC-CcEEEEEcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL 197 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~ 197 (398)
.+|||=|||+||+.++|.+...- .|+|++.+-
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999974334 499998876
No 380
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=92.53 E-value=0.37 Score=42.45 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=52.7
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
.-.|++|++||+ + +.+++++ +..+.++.++|+.+..... ...+. .....++++++||+|+
T Consensus 8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~~-~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGDV-PDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--S---------------SCT-E-EGGGHHHHGGG-SEEE
T ss_pred hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCcC-CHHHHHHHHccCCEEE
Confidence 357899999996 1 1267777 5788999999998854211 01111 2245788999999997
Q ss_pred EccC-CChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 242 LHPV-LDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~P-lt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+.-- +-..| | .+.++.+++++.++=.+-
T Consensus 68 iTGsTlvN~T---i-~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 68 ITGSTLVNGT---I-DDILELARNAREVILYGP 96 (147)
T ss_dssp EECHHCCTTT---H-HHHHHHTTTSSEEEEESC
T ss_pred EEeeeeecCC---H-HHHHHhCccCCeEEEEec
Confidence 6531 11111 1 456777776666665543
No 381
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=92.52 E-value=0.18 Score=44.71 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=27.8
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhH
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATR 202 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~ 202 (398)
+|||-|||+||+.++|.+...-.++|++. |+.+..+
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~ 38 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPE 38 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHH
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEecccccch
Confidence 79999999999999999755667887766 4543443
No 382
>PRK06128 oxidoreductase; Provisional
Probab=92.45 E-value=0.48 Score=46.08 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=30.7
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
.++||++.|.|. |.||+.+|+.|+ ..|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence 488999999997 999999999984 789999876554
No 383
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.44 E-value=0.96 Score=46.81 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=60.6
Q ss_pred CeEEEEecChhHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~---------fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~ 235 (398)
.+|||+|+|.||+.+++.+.+. .+.+|. ++|++.... +. ..........++++++.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~ 69 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN 69 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence 4799999999999998876321 245543 457654321 00 00011122457899985
Q ss_pred --cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCc
Q 015895 236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM 291 (398)
Q Consensus 236 --~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i 291 (398)
+.|+|+.+++.....+. -..+.++.|.-+|...-+.+. .-++|.++.++..+
T Consensus 70 d~~iDvVve~tg~~~~~~~----~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 70 DPDIDIVVELMGGIEPARE----LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred CCCCCEEEECCCCchHHHH----HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 46999998875322222 223445666666543222222 23557777776554
No 384
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.34 E-value=0.77 Score=45.64 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=55.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCC
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD 238 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e--ll~~aD 238 (398)
..|.+|.|+|.|.||...++.+ +..|++|++.+++. +.+.+ +.+ +.|...... ...++.+ .....|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~-------~~Ga~~v~~-~~~~~~~~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVE-------ELGATYVNS-SKTPVAEVKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHH-------HcCCEEecC-CccchhhhhhcCCCC
Confidence 3678999999999999999875 88999999998742 12211 111 122211100 0011111 123467
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
+|+-++... . .+ .+.++.++++..++.++.
T Consensus 241 ~vid~~g~~-~---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 241 LIIEATGVP-P---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred EEEECcCCH-H---HH-HHHHHHccCCcEEEEEec
Confidence 777776521 1 12 456677777777776653
No 385
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.32 E-value=0.64 Score=46.07 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=50.4
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV 245 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P 245 (398)
+|+|+|- |-.|.++.|+|+.--.+++........ + ...+.+++++++|++++++|
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------------------~-~~~~~~~~~~~~D~vFlalp 58 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------------------K-DAAERAKLLNAADVAILCLP 58 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------------------c-CcCCHhHhhcCCCEEEECCC
Confidence 6999997 999999999985333456655432211 0 01245677789999999999
Q ss_pred CChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 246 LDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
.. .+..+. .. + .+.|+.+||.|
T Consensus 59 ~~-~s~~~~-~~-~--~~~g~~VIDlS 80 (310)
T TIGR01851 59 DD-AAREAV-SL-V--DNPNTCIIDAS 80 (310)
T ss_pred HH-HHHHHH-HH-H--HhCCCEEEECC
Confidence 53 333332 11 1 24688898887
No 386
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.31 E-value=0.58 Score=53.49 Aligned_cols=107 Identities=10% Similarity=0.148 Sum_probs=64.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH--h--------hhh---h---hhhhcC---CC-Cc
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AYG---Q---FLKANG---EQ-PV 222 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~--~--------~~~---~---~~~~~~---~~-~~ 222 (398)
+.-.++.|+|.|++|+..++.+ .++|++ . .++..-+++.... . .|+ . ..++.+ .. ..
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 4457899999999999999986 789888 2 3332211111000 0 000 0 000000 00 00
Q ss_pred cc----cccC-C-HHHHhhcCCEEEEccCCChhhhhhccHH-HHhcCCCCc----EEEEcC
Q 015895 223 TW----KRAS-S-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS 272 (398)
Q Consensus 223 ~~----~~~~-s-l~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk~ga----ilIN~a 272 (398)
.+ +.+. . +++.+..+|+|+.++-..+.+..+|.++ ..+.||+|+ +++|++
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00 0011 1 4578899999999997777788999888 778899998 888875
No 387
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.27 E-value=0.16 Score=46.55 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=45.0
Q ss_pred eEEEEecChhHHHHHHH-HHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895 167 TVGVIGAGRIGSAYARM-MVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL 242 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~-la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l 242 (398)
++.|||.|++|++++.. ..+..||++ -+||..+... -. .. .+..+...+++++.++ +.|+.++
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-G~----------~~--~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-GT----------KI--GDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-Cc----------cc--CCeeeechHHHHHHHHhcCccEEEE
Confidence 59999999999999953 223567875 5778776531 10 11 1233445567888887 6777899
Q ss_pred ccCC
Q 015895 243 HPVL 246 (398)
Q Consensus 243 ~~Pl 246 (398)
|+|.
T Consensus 153 tVPa 156 (211)
T COG2344 153 TVPA 156 (211)
T ss_pred EccH
Confidence 9995
No 388
>PRK07877 hypothetical protein; Provisional
Probab=92.22 E-value=0.79 Score=50.55 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=59.2
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhH--H-HH----------HHhhhhhhhhhcCCC-Cccc
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATR--L-EK----------FVTAYGQFLKANGEQ-PVTW 224 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~--~-~~----------~~~~~~~~~~~~~~~-~~~~ 224 (398)
..|++++|+|+|+| +|+.+|..|+ ..| -++...|...-+. + +. ..+.....+.+.... .+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 45999999999999 9999999985 455 2677777542110 0 00 000011111111100 0000
Q ss_pred -c---ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895 225 -K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT 261 (398)
Q Consensus 225 -~---~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~ 261 (398)
. ...+++++++.+|+|+-|+- +-+++.++++.....
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 0 11357888999999999997 478999998776665
No 389
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.08 E-value=0.8 Score=49.10 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=32.6
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
-.|+++.|.|. |.||+.++++| ...|++|++++|....
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence 46789999997 99999999998 5789999999887654
No 390
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=92.01 E-value=1.2 Score=46.52 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=70.6
Q ss_pred cCCCeEEEEec----ChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895 163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (398)
Q Consensus 163 l~gktvGIIGl----G~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~ 236 (398)
++=++|.|||. |++|..+.+.+ +..|. +|+..+|..... .+...+.+++|+-..
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~~ 64 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPDP 64 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCCC
Confidence 45678999999 88999999998 56554 788888864321 112234688998888
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcE-EEEcCCCc-----hhcHHHHHHHHhcCCccEE
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRGP-----VIDEVALVEHLKQNPMFRV 294 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gai-lIN~aRG~-----~vde~aL~~aL~~g~i~gA 294 (398)
.|++++++|. +.+...+.+ ..+ .+-.++ ++.-+-++ .-.+++|.+..+.+.+.-.
T Consensus 65 ~Dlavi~vp~-~~~~~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 65 VDLAVIVVPA-KYVPQVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCEEEEecCH-HHHHHHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 8999999994 344555533 333 333444 43322222 2346778888887765543
No 391
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.97 E-value=2.1 Score=44.31 Aligned_cols=114 Identities=20% Similarity=0.178 Sum_probs=66.0
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEEc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH 243 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~aDiV~l~ 243 (398)
+-++.|+|+|.+|.++|+.| ...|++|.++|.......... ++... ....... ..+ .+.+.++|+|+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s 75 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS 75 (448)
T ss_pred CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence 34799999999999999997 689999999997653211110 11100 0111111 112 3446789998765
Q ss_pred c--CCC-hhhh-------hhccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 244 P--VLD-KTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 244 ~--Plt-~~T~-------~li~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
. |.+ |+-. .++.+ +.+ ..++...+-|--+.|..--..-+...|+.
T Consensus 76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 4 322 2211 12332 233 23444456666677887777767777775
No 392
>PRK10206 putative oxidoreductase; Provisional
Probab=91.95 E-value=0.46 Score=47.63 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=42.0
Q ss_pred eEEEEecChhHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895 167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS 241 (398)
Q Consensus 167 tvGIIGlG~IG~~-vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~ 241 (398)
++||||+|.|++. .+..+... -++++. ++|+.+... .+.+.| +. ...+.+++++++ +.|+|+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~ 69 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV 69 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence 6999999998864 34433222 257775 588875332 211111 10 123468999995 579999
Q ss_pred EccCCC
Q 015895 242 LHPVLD 247 (398)
Q Consensus 242 l~~Plt 247 (398)
+++|..
T Consensus 70 I~tp~~ 75 (344)
T PRK10206 70 VCTHAD 75 (344)
T ss_pred EeCCch
Confidence 999954
No 393
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.95 E-value=0.17 Score=43.47 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~ 199 (398)
.++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence 578999999999999999985 5566 788898764
No 394
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.89 E-value=0.39 Score=47.83 Aligned_cols=105 Identities=25% Similarity=0.295 Sum_probs=58.7
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhc
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE 236 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~sl~ell~~ 236 (398)
-++.++|+|||. |+||+.+|..++. ++.-++..+|...... + ..+ +.+... ....... .+..+.++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~-a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-V-AAD-----LSHIDT-PAKVTGYADGELWEKALRG 76 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-c-ccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence 466779999999 9999999988731 4556899999832211 0 001 111111 1111111 222578899
Q ss_pred CCEEEEccCC--Ch-hhh-hhcc------HH---HHhcCCCCcEEEEcCCC
Q 015895 237 ADVISLHPVL--DK-TTY-HLIN------KE---RLATMKKEAILVNCSRG 274 (398)
Q Consensus 237 aDiV~l~~Pl--t~-~T~-~li~------~~---~~~~mk~gailIN~aRG 274 (398)
||+|++++-. .+ +++ .++. ++ .+....+.++++.++-+
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 9999877643 21 122 2222 22 23334666778777654
No 395
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.89 E-value=0.81 Score=45.27 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=82.1
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
++|.|+|.|.||+-++-+| ...|..|...-|.+. .+.+.+. +-.+...... .... ......+.+..+|+|++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~-~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPV-VAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHH--HHHHHhC-CeEEecCCCcccccc-ccccChhhcCCCCEEEEEe
Confidence 5799999999999999998 467777777766553 1221110 1011111110 0001 1122335567899999998
Q ss_pred CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC---CCCCCCCCCCCCCCceEEcCCC
Q 015895 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF---EDEPYMKPGLSEMKNAIVVPHI 321 (398)
Q Consensus 245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~---~~EP~~~~~L~~~~nvilTPHi 321 (398)
-. -++...+ +......++.+.++-.-- ++=.++.+-+.+...++.+. +..+ ..+|.. -.......+.+.+.-
T Consensus 76 Ka-~q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~G-~~~~~a~~~~~g~-v~~~g~g~~~ig~~~ 150 (307)
T COG1893 76 KA-YQLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLGG-VTTHGAVREGPGH-VVHTGLGDTVIGELR 150 (307)
T ss_pred cc-ccHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEEE-EeeeeeEecCCce-EEEecCCcEEEccCC
Confidence 64 3444444 456666788877664433 34455566666666543331 2211 122321 123345677787776
Q ss_pred CCCc
Q 015895 322 ASAS 325 (398)
Q Consensus 322 a~~T 325 (398)
+..+
T Consensus 151 ~~~~ 154 (307)
T COG1893 151 GGRD 154 (307)
T ss_pred CCch
Confidence 6554
No 396
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=91.85 E-value=0.94 Score=45.49 Aligned_cols=74 Identities=14% Similarity=0.266 Sum_probs=48.4
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
.+.|++|+++|= +++..+.+..++.-+|++|.+..|..-.....+.+. ++..+ ..+....+++|.+++||
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~ea~~~aD 228 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENAG---HKITITDQLEGNLDKAD 228 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHHccCC
Confidence 589999999998 588888887654355999998887531101111110 11112 22334578999999999
Q ss_pred EEEE
Q 015895 239 VISL 242 (398)
Q Consensus 239 iV~l 242 (398)
+|..
T Consensus 229 vvyt 232 (338)
T PRK08192 229 ILYL 232 (338)
T ss_pred EEEE
Confidence 9986
No 397
>PLN00106 malate dehydrogenase
Probab=91.83 E-value=0.35 Score=48.26 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=60.8
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Ccc-ccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~sl~ell~~aDi 239 (398)
..++|+|+|. |+||+.+|..|+. .+.-++..+|..... .+ ..+ +.+.... ... +....++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~-a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GV-AAD-----VSHINTPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-ee-Ech-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence 3469999999 9999999998732 444589999986621 10 001 0111110 111 1122456788999999
Q ss_pred EEEccCC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCCCc
Q 015895 240 ISLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 240 V~l~~Pl--t~-~T~-~li--~----~---~~~~~mk~gailIN~aRG~ 275 (398)
|+++.-. .+ .++ .++ | + +.+....+.+++++++-.-
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 9887543 21 222 122 1 1 2344456888999987643
No 398
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.80 E-value=0.77 Score=45.87 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=62.8
Q ss_pred CeEEEEecChhHHHHHHHHHhc-------CCcEEEE-EcCChhhH------HHHHHhhhhhhhhhcCCC-CccccccCCH
Q 015895 166 QTVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQ-PVTWKRASSM 230 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~-------fG~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~sl 230 (398)
++|+|+|+|+||+.+++.+.+. ++.+|++ +|++..-. .+...+ .... +.. .... ...++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g~l~~~~~-~~~~~ 74 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-GRLEEIDY-EKIKF 74 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-CccccCCC-CcCCH
Confidence 3799999999999999987432 5677654 45432110 011000 0000 100 0000 00145
Q ss_pred HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCC
Q 015895 231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP 290 (398)
Q Consensus 231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~ 290 (398)
++++ ..+|+|+=|+|...+-..- -.-....++.|.-+|-..-|.+. .-+.|.+..+++.
T Consensus 75 ~~ll~~~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g 135 (326)
T PRK06392 75 DEIFEIKPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR 135 (326)
T ss_pred HHHhcCCCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence 6654 4689999888753210101 12234456778888888777764 3455666665543
No 399
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.74 E-value=0.56 Score=48.36 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=65.9
Q ss_pred ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++.++++.|+|+|..|.+.++.| +..|.+|.++|.......... +. .+ ..........+.++..|+|+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv 70 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIV 70 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence 35688999999999999999886 689999999997654321110 11 11 11111111224456788766
Q ss_pred EccCCChhhhh----------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 242 LHPVLDKTTYH----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 242 l~~Plt~~T~~----------li~~-~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
...-..++... ++.+ +.+.. ++.-.+-|--+.|..--..-|...|+.
T Consensus 71 ~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 71 ASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred ECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 54322222111 2222 33333 333355566677887766667777764
No 400
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.73 E-value=1.1 Score=44.06 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~ 201 (398)
.|.+|.|+|.|.+|...++.+ +.+|++ |++.+++...
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~ 200 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence 488999999999999999985 899998 9998876543
No 401
>PRK12742 oxidoreductase; Provisional
Probab=91.63 E-value=1 Score=41.59 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=30.5
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
.+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence 477899999996 89999999998 5789998876553
No 402
>PRK07411 hypothetical protein; Validated
Probab=91.62 E-value=0.69 Score=47.31 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=60.4
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT- 223 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~- 223 (398)
..|+..+|.|||+|.+|..+|+.|+ ..|. ++..+|...-.. + +++ .+.....+++.... .+.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 4699999999999999999999985 5565 688888653211 0 000 00011111111110 000
Q ss_pred cc-cc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCC
Q 015895 224 WK-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264 (398)
Q Consensus 224 ~~-~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~ 264 (398)
+. .. .+..++++.+|+|+.|+- +.+++.++++.....-+|
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 00 11 134567889998888875 567888888776655444
No 403
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.58 E-value=2.2 Score=43.89 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=67.3
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCccccccCCHHHHhhcCCEEEEcc-
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHP- 244 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sl~ell~~aDiV~l~~- 244 (398)
++.|||+|.+|.++|+.| +..|++|.++|............ .++ ..|. .+....+ .+.+..+|+|+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~gi---~~~~g~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEGS---VLHTGLH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccCc---EEEecCc-hHHhccCCEEEECCC
Confidence 378999999999999997 78999999999765432111000 001 0121 1111123 34567899887654
Q ss_pred -CC-Chhhh-------hhccHH-HH-hcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 245 -VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 245 -Pl-t~~T~-------~li~~~-~~-~~mk~gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
|. +|+-. .++.+- .+ ..++...+-|.-+.|..--..=+...|+...
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 32 22211 123332 22 3344456677778898887777777777643
No 404
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=91.51 E-value=0.5 Score=46.54 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=69.9
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC--CCCccccccCC---------
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASS--------- 229 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s--------- 229 (398)
-...+.++-++|+|-+|-..+-. +...|.-|..+|-.+....+ .+..+..+.... +..-|+.+..|
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keq--v~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~ 236 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQ--VESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE 236 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhh--hhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence 45777788999999999998876 46788888888876543211 111111111110 01112222222
Q ss_pred -HHHHhhcCCEEEE--ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 230 -MDEVLREADVISL--HPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 230 -l~ell~~aDiV~l--~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+.|..++.|||+. .+|.-+ .-.|+.++..+.||||+++||.+
T Consensus 237 ~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 237 LVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 3456789999964 467644 46788999999999999999984
No 405
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=91.49 E-value=0.76 Score=43.62 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=29.4
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcC
Q 015895 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL 197 (398)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~ 197 (398)
++.||++.|.|. +.||+++|++++ ..|++|+..++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence 478999999997 489999999984 78999877643
No 406
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.48 E-value=2.2 Score=44.39 Aligned_cols=118 Identities=15% Similarity=0.103 Sum_probs=67.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhc--C----C--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEG--F----K--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~--f----G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~ 236 (398)
-+|+|||. |.||..+|-.|+.. | + -+++.+|.........-.+..++.. ... . ......+-.+.+++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~-~~~-~--~v~i~~~~ye~~kd 176 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY-PLL-R--EVSIGIDPYEVFQD 176 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh-hhc-C--ceEEecCCHHHhCc
Confidence 37999999 99999999887432 2 2 3788889877653322222111110 000 0 11111234567899
Q ss_pred CCEEEEccCC--Ch-hhh-hhc--cH-------HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 237 ADVISLHPVL--DK-TTY-HLI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 237 aDiV~l~~Pl--t~-~T~-~li--~~-------~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
||+|++..-. .+ ++| .++ |. +.+.. ..+.+++|.++ .++|.-..+-.-.+|
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg 241 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP 241 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence 9999987543 22 122 122 11 23444 47889999987 567777755544443
No 407
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.48 E-value=0.56 Score=48.90 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=64.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.||+|+|+|+|.-|.++|+.| +. |++|+++|........ . .. +.. .. ... ....+.+.++|+|+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~----~~~---~~--~~~-~~~~~~~~~~d~vV~S 70 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EE----LYS---KN--AIA-ALSDSRWQNLDKIVLS 70 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hh----hhc---Cc--eec-cCChhHhhCCCEEEEC
Confidence 478999999999999999998 55 9999999954332111 0 00 000 00 101 1123456789998876
Q ss_pred cCCChhhh----------hhccHH-HH-hcCCC-CcEEEEcCCCchhcHHHHHHHHhc
Q 015895 244 PVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 244 ~Plt~~T~----------~li~~~-~~-~~mk~-gailIN~aRG~~vde~aL~~aL~~ 288 (398)
.--.+... .++++- .+ ..+++ ..+-|--+.|..--..-+...|+.
T Consensus 71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 42222211 133332 22 33433 345566677887777777777775
No 408
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.37 E-value=1.7 Score=42.61 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.3
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~ 199 (398)
..|...+|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence 4588999999999999999999985 5665 688898764
No 409
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=91.35 E-value=2.2 Score=42.76 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=46.0
Q ss_pred c-CCCeEEEEecC-------hhHHHHHHHHHhcCCcEEEEEcC-C---hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895 163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-Y---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (398)
Q Consensus 163 l-~gktvGIIGlG-------~IG~~vA~~la~~fG~~V~~~d~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl 230 (398)
+ .|++|+|+|.| ++.++.+..+ ..||++|.+..| . +.+..-...+.+ ....| ..+....++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~ 238 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQN---AAESG---GSLTVSHDI 238 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence 6 78999887654 6788888876 589999999988 2 222111000000 11112 123345789
Q ss_pred HHHhhcCCEEEE
Q 015895 231 DEVLREADVISL 242 (398)
Q Consensus 231 ~ell~~aDiV~l 242 (398)
+|.+++||+|..
T Consensus 239 ~ea~~~aDvvy~ 250 (335)
T PRK04523 239 DSAYAGADVVYA 250 (335)
T ss_pred HHHhCCCCEEEe
Confidence 999999999965
No 410
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.27 E-value=1.1 Score=44.89 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.|++|.|.|.|.+|...++.+ +.+|++|++.+....
T Consensus 183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~ 218 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSN 218 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 578999999999999999985 899999988776553
No 411
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=91.18 E-value=0.59 Score=38.95 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=55.8
Q ss_pred ecChhHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 015895 172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH 243 (398)
Q Consensus 172 GlG~IG~~vA~~la~~---fG~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~ 243 (398)
|+|.||+.+++.+... +++++. ++|++ ......... . ......++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P----DEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T----HSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c----cccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999998432 266654 45665 111111000 0 0123468999988 99999988
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh---cHHHHHHHHhcC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQN 289 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v---de~aL~~aL~~g 289 (398)
.+. +... +-....++.|.-+|-++-|.+. .-+.|.++.+++
T Consensus 67 t~~-~~~~----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 67 TSS-EAVA----EYYEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp SSC-HHHH----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred CCc-hHHH----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 653 2222 2344556789999999888887 233355544443
No 412
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.16 E-value=1.1 Score=44.36 Aligned_cols=100 Identities=23% Similarity=0.295 Sum_probs=58.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhcCCE
Q 015895 166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~sl~ell~~aDi 239 (398)
++|+|||. |++|+.+|-.+ ...+ -++..+|.. ...- .-.+ +.+.. ....... . +++.+.++.||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l-~~~~~~~elvLiDi~-~a~g-~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIV-NTPG-VAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHH-HhCCCCcEEEEEecC-ccce-eehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence 47999999 99999999887 3344 489999987 2211 0011 11111 1111111 1 234577899999
Q ss_pred EEEccCC--Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCC
Q 015895 240 ISLHPVL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSRG 274 (398)
Q Consensus 240 V~l~~Pl--t~-~T~-~li--~~-------~~~~~mk~gailIN~aRG 274 (398)
|+++.-. .+ +|| .++ |. +.+..-.|.+++|+++-.
T Consensus 72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 9877543 22 233 222 21 234445789999999764
No 413
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.11 E-value=0.9 Score=44.40 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCCh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQ 199 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~ 199 (398)
.|+++.|+|.|.||...++.+ +.+|++ |++.|+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCH
Confidence 467899999999999999875 889997 55666654
No 414
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=91.05 E-value=2.3 Score=36.94 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 180 YARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 180 vA~~la~~fG~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
.+++| ...|.+|++=.-.... ..+.| ..+| .....+.+|++++||+|+-.-|.+ .
T Consensus 19 ~v~~L-~~~G~~V~VE~gaG~~a~fsD~~Y--------~~aG-----A~I~~~~~ev~~~adiIl~v~~p~--------~ 76 (136)
T PF05222_consen 19 DVKKL-VKLGHEVLVESGAGEGAGFSDEEY--------EEAG-----AEIVSRAEEVYSDADIILKVKPPS--------E 76 (136)
T ss_dssp HHHHH-HHTTSEEEEETTTTGGGTB-HHHH--------HHTT-----EEEESSHHHHHTTSSEEEESS-----------G
T ss_pred HHHHH-HhCCCEEEEECCCCCcCcccHHHH--------hhCC-----cEEecCchhhcccCCEEEEECCCC--------H
Confidence 44555 4679999876544221 11222 1122 333456679999999998776643 4
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~ 301 (398)
+.++.|++|.++|-...-. ....+++.|.+.++...++|-...
T Consensus 77 ~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 77 EELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp GGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred HHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 5677899999999887654 588899999999999999887654
No 415
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.04 E-value=1.1 Score=45.90 Aligned_cols=91 Identities=8% Similarity=-0.090 Sum_probs=53.5
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEE
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI 240 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV 240 (398)
..++-|+|+|++|+.+++.| +..|.++++.|+...... .+.+. ..-.....+.+.+ +++|+.|
T Consensus 240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~~-----------~~~g~-~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEHR-----------LPDDA-DLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhhh-----------ccCCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence 56799999999999999998 678888888887532211 01111 1111112222222 5688999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVN 270 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN 270 (398)
+++++.+.++.-. ....+.+.|+..+|-
T Consensus 307 I~~t~dD~~Nl~i--vL~ar~l~p~~kIIa 334 (393)
T PRK10537 307 LALRDNDADNAFV--VLAAKEMSSDVKTVA 334 (393)
T ss_pred EEcCCChHHHHHH--HHHHHHhCCCCcEEE
Confidence 9888864444332 234555555544443
No 416
>PRK05442 malate dehydrogenase; Provisional
Probab=90.98 E-value=1.8 Score=43.29 Aligned_cols=112 Identities=16% Similarity=0.121 Sum_probs=60.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~fG~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
++|+|||. |.+|+.+|-.+.. ++-- ++..+|..... ....-.+. .+.. ..........+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl-----~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL-----DDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh-----hhhhhhhcCCcEEecChHHHhC
Confidence 37999998 9999999987632 2212 79999985421 11110111 0000 00000111134557789
Q ss_pred cCCEEEEccCC--Ch-hhhh-hc--cHH-------HHhc-CCCCcEEEEcCCCchhcHHHHHH
Q 015895 236 EADVISLHPVL--DK-TTYH-LI--NKE-------RLAT-MKKEAILVNCSRGPVIDEVALVE 284 (398)
Q Consensus 236 ~aDiV~l~~Pl--t~-~T~~-li--~~~-------~~~~-mk~gailIN~aRG~~vde~aL~~ 284 (398)
+||+|+++.-. .+ +||. ++ |.+ .+.. .++.+++|.++ .++|.-.-+-
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~ 140 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA 140 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence 99999887542 22 2332 22 111 2333 44788999988 5666655433
No 417
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.95 E-value=1 Score=44.14 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=45.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEE
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL 242 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l 242 (398)
++|.|.| .|.||+.+++.| ...|.+|.+.+|..+... . +...+.... ......++.++++.+|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~-~--------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKAS-F--------LKEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhh-h--------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4789999 599999999998 577999999988754321 0 001111000 01112356778999999886
Q ss_pred ccC
Q 015895 243 HPV 245 (398)
Q Consensus 243 ~~P 245 (398)
+.+
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 644
No 418
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=90.81 E-value=1.3 Score=43.73 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=57.6
Q ss_pred EEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC--
Q 015895 170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL-- 246 (398)
Q Consensus 170 IIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Pl-- 246 (398)
|||.|.||+.+|-.++. ++.-++..+|.........-.+...... ... ...... ..-.+.+++||+|++..-.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~-~~~-~~~~i~--~~~~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS-FLP-TPKKIR--SGDYSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc-ccC-CCeEEe--cCCHHHHCCCCEEEECCCCCC
Confidence 69999999999987742 4444899999865432211111110000 000 011111 2334678999999987543
Q ss_pred Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895 247 DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 247 t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a 281 (398)
.+ .+| .++ | .+.+....+.+++|+++ .++|.-.
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t 120 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT 120 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence 22 122 222 1 12344457889999987 4455444
No 419
>PRK08324 short chain dehydrogenase; Validated
Probab=90.70 E-value=0.83 Score=50.05 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=35.0
Q ss_pred cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 161 ~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
..+.||++.|.| .|.||+.+|+.+ ...|++|++.|++...
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA 458 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence 457899999999 599999999998 5789999999988754
No 420
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.61 E-value=2.2 Score=44.43 Aligned_cols=125 Identities=17% Similarity=0.284 Sum_probs=74.3
Q ss_pred CeEEEEecChhHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhcCC
Q 015895 166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 166 ktvGIIGlG~IG~~--vA~~la~---~fG-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
++|.|||.|.. .. +.+-+.+ .++ -+|..+|...... +. ...+...+ +..+ .+..+....+.+|.++.||
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence 47999999986 33 2222221 344 6899999987542 11 11222222 2223 2444556678999999999
Q ss_pred EEEEccCCCh-h----------hhhhcc----------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 015895 239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH 285 (398)
Q Consensus 239 iV~l~~Plt~-~----------T~~li~----------------------~~~~~~mk~gailIN~aRG~~vde~aL~~a 285 (398)
||++.+--.. + -+|+++ .+.+....|++++||.+-.--+-..++.+.
T Consensus 77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~ 156 (437)
T cd05298 77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL 156 (437)
T ss_pred EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence 9987654321 1 122322 122444568999999999776666777666
Q ss_pred HhcCCccEE
Q 015895 286 LKQNPMFRV 294 (398)
Q Consensus 286 L~~g~i~gA 294 (398)
....++.|.
T Consensus 157 ~~~~kviGl 165 (437)
T cd05298 157 FPNARILNI 165 (437)
T ss_pred CCCCCEEEE
Confidence 544555554
No 421
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.61 E-value=0.42 Score=47.37 Aligned_cols=34 Identities=35% Similarity=0.631 Sum_probs=28.2
Q ss_pred CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 015895 166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ 199 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~ 199 (398)
++|+|||.|.||+++|-+|.. .++-++..||...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~ 35 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE 35 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence 479999999999999988742 5566899999873
No 422
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.59 E-value=1.6 Score=43.81 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~ 201 (398)
.|.+|.|.|.|.||...++.+ +..|+ +|++.+++...
T Consensus 191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence 478999999999999999875 89999 69998877654
No 423
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.50 E-value=1.8 Score=39.68 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=67.0
Q ss_pred eEEEEecChhHHH--HHHHHH--hcCC-cEEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 167 TVGVIGAGRIGSA--YARMMV--EGFK-MNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 167 tvGIIGlG~IG~~--vA~~la--~~fG-~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
+|.|||.|..--. +..-+. ..+. .++..+|.+.... ...+.+.+ .++.+ .+..+....+.+|.++.||+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~---~~~~~-~~~~v~~ttd~~eAl~gADf 76 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM---VEEAG-ADLKVEATTDRREALEGADF 76 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH---HHHCT-TSSEEEEESSHHHHHTTESE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH---HHhcC-CCeEEEEeCCHHHHhCCCCE
Confidence 5899999986544 222221 2454 4899999988542 12222221 22333 34445556789999999999
Q ss_pred EEEccCCChh-----------hhhhcc------------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 015895 240 ISLHPVLDKT-----------TYHLIN------------------------KERLATMKKEAILVNCSRGPVIDEVALVE 284 (398)
Q Consensus 240 V~l~~Plt~~-----------T~~li~------------------------~~~~~~mk~gailIN~aRG~~vde~aL~~ 284 (398)
|++.+--... -+|+.. .+.++...|+|+++|.+-..-+...++.+
T Consensus 77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r 156 (183)
T PF02056_consen 77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSR 156 (183)
T ss_dssp EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHH
T ss_pred EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHH
Confidence 9987653211 111111 12345567899999999887777777665
Q ss_pred HHh
Q 015895 285 HLK 287 (398)
Q Consensus 285 aL~ 287 (398)
...
T Consensus 157 ~~~ 159 (183)
T PF02056_consen 157 YTP 159 (183)
T ss_dssp HST
T ss_pred hCC
Confidence 543
No 424
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=90.50 E-value=1.1 Score=44.57 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=48.1
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.+|+||| .|-.|+++.+.| .... .++.....+... . ..+.++.++++|+++++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL-~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFla 57 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERL-AGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILC 57 (313)
T ss_pred cEEEEECCCCHHHHHHHHHH-hcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEEC
Confidence 4799999 599999999998 4443 455443222110 0 02334567889999999
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
+|.. ....+. .+. .+.|..+||.|
T Consensus 58 lp~~-~s~~~~-~~~---~~~g~~VIDlS 81 (313)
T PRK11863 58 LPDD-AAREAV-ALI---DNPATRVIDAS 81 (313)
T ss_pred CCHH-HHHHHH-HHH---HhCCCEEEECC
Confidence 9952 222222 221 24688899887
No 425
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=90.45 E-value=0.79 Score=44.14 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256 (398)
Q Consensus 177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~ 256 (398)
|..+|-.+| ..|++|+..||+..-..+..++ ++.++| +...++-.+..+.+.+.++.+|....|-++. +
T Consensus 33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r 101 (340)
T COG4007 33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R 101 (340)
T ss_pred chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence 667887774 6799999999987643333222 233444 3334455677899999999999988887764 7
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 257 ERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
+.+..++.|+++-|+.+-+.+ .|+..|
T Consensus 102 ei~~hvpEgAVicnTCT~sp~---vLy~~L 128 (340)
T COG4007 102 EILEHVPEGAVICNTCTVSPV---VLYYSL 128 (340)
T ss_pred HHHhhCcCCcEecccccCchh---HHHHHh
Confidence 899999999999999887654 455544
No 426
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.29 E-value=0.94 Score=45.29 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=50.8
Q ss_pred CCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895 165 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240 (398)
Q Consensus 165 gktvGIIGl-G~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV 240 (398)
+++|+|+|. |.+|+.+.+.| ...++ ++.+..+..... .. +.-.+ ....+... +. +.++.+|+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL-~~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d~-~~-~~~~~vDvV 67 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNIL-EERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVEDL-TT-FDFSGVDIA 67 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHH-HhCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEeeC-CH-HHHcCCCEE
Confidence 468999997 99999999998 45433 445554332210 00 00001 11111111 22 334789999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
++++|.. .++.+. .+. .+.|+++||.|.
T Consensus 68 f~A~g~g-~s~~~~-~~~---~~~G~~VIDlS~ 95 (334)
T PRK14874 68 LFSAGGS-VSKKYA-PKA---AAAGAVVIDNSS 95 (334)
T ss_pred EECCChH-HHHHHH-HHH---HhCCCEEEECCc
Confidence 9999852 333332 222 356889998874
No 427
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.25 E-value=1.6 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.0
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.+.||++.|.|. |.||+.+|+.| ...|++|+..++...
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~ 40 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP 40 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence 378999999998 89999999998 478999999988653
No 428
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.12 E-value=1.6 Score=42.87 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=31.7
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
-.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++..
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~ 204 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPS 204 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHH
Confidence 3567899999999999999885 899999999988754
No 429
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=90.10 E-value=6.2 Score=37.10 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=33.7
Q ss_pred eEEEEeCCCCchH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCc
Q 015895 16 YRVVSTKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72 (398)
Q Consensus 16 ~kvlv~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~ 72 (398)
|+||||.+-+... ..+.|++.|+++...+.-+....+++....+.+.+|.+|..|..
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n 58 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE 58 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHH
Confidence 6899999877633 45778888988766543222111233333333347888766543
No 430
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.09 E-value=1.5 Score=44.35 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.|.+|.|.|.|.+|...++.+ +.+|++|++.++..+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIG-KAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHH-HHcCCeEEEEeCChH
Confidence 588999999999999999985 899999999887653
No 431
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.06 E-value=2.1 Score=41.97 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=30.5
Q ss_pred CCeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895 165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQAT 201 (398)
Q Consensus 165 gktvGIIGl-G~IG~~vA~~la~~fG~-~V~~~d~~~~~ 201 (398)
|.+|.|.|. |.+|+..++.+ +.+|+ +|++.+++...
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~ 192 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEK 192 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHH
Confidence 489999998 99999999974 89998 89998876543
No 432
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.04 E-value=1.8 Score=43.12 Aligned_cols=107 Identities=22% Similarity=0.209 Sum_probs=58.4
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhhH-HH-HHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LE-KFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
+|+|||. |.+|+.+|..|+ ..+. ++..+|...... .+ ...+. .+.. ..........+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl-----~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL-----MDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEeeh-----hcccchhcCceeccCChHHHhC
Confidence 5899999 999999998873 3332 588999854321 11 00000 0000 00001111124467789
Q ss_pred cCCEEEEccCC--Ch-hhh-hhc--c-------HHHHhcC-CCCcEEEEcCCCchhcHHH
Q 015895 236 EADVISLHPVL--DK-TTY-HLI--N-------KERLATM-KKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 236 ~aDiV~l~~Pl--t~-~T~-~li--~-------~~~~~~m-k~gailIN~aRG~~vde~a 281 (398)
+||+|++..-. .+ +|+ .++ | ...+... ++.+++|.++ .++|.-.
T Consensus 75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99999877543 21 222 222 1 1234444 5788898887 5666655
No 433
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=90.03 E-value=0.84 Score=42.31 Aligned_cols=39 Identities=28% Similarity=0.282 Sum_probs=33.6
Q ss_pred ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+.+|++.|.| .|.||+.+++.| ...|++|++.+++...
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~ 42 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDD 42 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 46789999999 699999999998 4779999999988643
No 434
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.01 E-value=1.8 Score=43.25 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~~aDiV~ 241 (398)
-.|.++.|.|.|.+|...++.+ +..|.+|++.++....... .. +..|....... ....+.++....|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~~-------~~~Ga~~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-AL-------EHLGADDYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HH-------HhcCCcEEecCCChHHHHHhcCCCcEEE
Confidence 3578999999999999999875 8999999888776543211 11 11222110000 0011223333467777
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
-+++... .-...+..++++..++.++.
T Consensus 250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence 7765311 11345667778888877754
No 435
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.98 E-value=1.7 Score=42.66 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=67.9
Q ss_pred CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
|++++|||--.=-..+++.| ...|++|..|.-..... + . .++....+.++.++++|+|++=+
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~-~-~~~~~~~~~~~~~~~~~~~i~p~ 62 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G-F-TGAVKCELLELDLTTLDVVILPV 62 (287)
T ss_pred CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c-c-ccceeecchhhhhccCCEEEECC
Confidence 68999999888888899998 68899887775321100 0 0 12233345566689999999999
Q ss_pred CCChhhh----------hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895 245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291 (398)
Q Consensus 245 Plt~~T~----------~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 291 (398)
|.+.+.. -.++++.++.|+++++ +-++. +..++-++.++..+
T Consensus 63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi 114 (287)
T TIGR02853 63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGV 114 (287)
T ss_pred ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCC
Confidence 9766531 1256889999998655 34443 33444445555444
No 436
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.98 E-value=1.8 Score=43.10 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=62.1
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCCh--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
+|+|+|. |.||+.+|..|+ .-+. ++..+|... +.......+ +.+.. ..........+..+.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~-~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~ 75 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIA-SGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFK 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHH-hCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhC
Confidence 7999999 999999999874 2221 588999875 211000000 00000 00000111135678899
Q ss_pred cCCEEEEccCC--Ch-hhhh-hc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895 236 EADVISLHPVL--DK-TTYH-LI--NK-------ERLATM-KKEAILVNCSRGPVIDEVALVEHLKQN 289 (398)
Q Consensus 236 ~aDiV~l~~Pl--t~-~T~~-li--~~-------~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g 289 (398)
+||+|++..-. .+ +||. ++ |. ..+... ++.+++|.++ .++|.-+-+-.-.+|
T Consensus 76 ~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg 141 (323)
T cd00704 76 DVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP 141 (323)
T ss_pred CCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence 99999876432 22 2321 11 11 234444 5888888885 566666544333333
No 437
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.95 E-value=0.72 Score=43.18 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=33.9
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+.||++.|.|. |.||+.+|++| ...|++|+..+++...
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~ 43 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG 43 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999997 89999999998 4789999999987653
No 438
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=89.93 E-value=1.4 Score=41.26 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=33.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+.||++.|.|. |.||+.+|++| ...|++|+..+++..+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~ 46 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK 46 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999996 99999999998 4679999999987643
No 439
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.80 E-value=0.51 Score=41.71 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=24.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL 197 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~ 197 (398)
.+|||+|+|+||+.+++.+...-++++.+ +|+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 37999999999999999864345777665 554
No 440
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.74 E-value=2.3 Score=42.14 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.|.+|.|.|.|.||...++.+ +..|.+|++.+++...
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence 478999999999999999985 8899999999886643
No 441
>PRK12747 short chain dehydrogenase; Provisional
Probab=89.74 E-value=2.1 Score=40.05 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=28.7
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcC
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL 197 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~ 197 (398)
+.||++.|.|. |.||+++|+.| ...|++|+..+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~ 36 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG 36 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence 46889999995 79999999998 578999988653
No 442
>PRK06114 short chain dehydrogenase; Provisional
Probab=89.73 E-value=0.74 Score=43.31 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=32.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.+.||++.|.|- |.||+.+|++| ...|++|++.+++.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence 478999999985 79999999998 578999999988654
No 443
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=0.96 Score=42.90 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=60.2
Q ss_pred cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238 (398)
Q Consensus 159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD 238 (398)
+|-+..-..+|+||.|+.|+....+. ..-+|..-+.......+...+.+.| ...+ .+++...+..+
T Consensus 4 ~~~~~~~v~~~~vgtgrl~ra~~~ra-~h~~~~cs~i~srS~~~a~~LaE~~-------~a~p------~d~~~~ael~~ 69 (289)
T COG5495 4 DGLRPARVVVGIVGTGRLGRAALLRA-DHVVVACSAISSRSRDRAQNLAETY-------VAPP------LDVAKSAELLL 69 (289)
T ss_pred cCccceeeEEEEeecchHHHHHHHHh-cchheeehhhhhcCHHHHhhchhcc-------CCCc------cchhhChhhhc
Confidence 45566678899999999999977774 5667776665443333333222221 1111 23444455668
Q ss_pred EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
++++-+|.. -++.-..-..-+||++++-||=
T Consensus 70 ~vfv~vpd~----~~s~vaa~~~~rpg~iv~HcSg 100 (289)
T COG5495 70 LVFVDVPDA----LYSGVAATSLNRPGTIVAHCSG 100 (289)
T ss_pred eEEecchHH----HHHHHHHhcccCCCeEEEEccC
Confidence 888888852 3333344555689999999965
No 444
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.57 E-value=1.7 Score=41.78 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.8
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA 200 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~ 200 (398)
.|.+|.|+|.|.||...++.+ +.+|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHH
Confidence 688999999999999999985 899986 888876654
No 445
>PRK06182 short chain dehydrogenase; Validated
Probab=89.55 E-value=1.4 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=31.7
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+|++.|.|. |.||+.+|+.+ ...|++|++.+++...
T Consensus 2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDK 39 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 4789999996 89999999998 4789999999987653
No 446
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.49 E-value=1.1 Score=44.65 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=58.8
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
+|+|||. |.+|+.+|-.| ...+. +++.+|..... ....-.+. .+.. ..........+..+.++
T Consensus 5 KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence 7999998 99999999876 33343 79999985421 11111111 1110 00000111134557789
Q ss_pred cCCEEEEccCCC--h-hhhh-hc--cH-------HHHhcCC-CCcEEEEcCCCchhcHHH
Q 015895 236 EADVISLHPVLD--K-TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 236 ~aDiV~l~~Plt--~-~T~~-li--~~-------~~~~~mk-~gailIN~aRG~~vde~a 281 (398)
+||+|+++.-.. + +||. ++ |. ..+.... +.+++|.++ .++|.-.
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 999999875432 2 2332 22 11 1233334 488999886 5565555
No 447
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.49 E-value=2.4 Score=42.22 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=31.3
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~ 201 (398)
.|.+|.|.|.|.+|+..++.+ +.+|++ |++.+++...
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence 478999999999999999985 899985 9888876543
No 448
>PRK13529 malate dehydrogenase; Provisional
Probab=89.46 E-value=6.6 Score=41.97 Aligned_cols=209 Identities=20% Similarity=0.207 Sum_probs=122.8
Q ss_pred hhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH
Q 015895 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185 (398)
Q Consensus 106 ~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la 185 (398)
.+..|.+.|+.- ..+|-.+++-+|+..|- .|..|...++.|.|.|..|-.+|+.+.
T Consensus 260 yr~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~ 315 (563)
T PRK13529 260 YRDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIV 315 (563)
T ss_pred hccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHH
Confidence 345799998744 46677889999888882 345788999999999999999999875
Q ss_pred hc---CCc-------EEEEEcCCh---hh--HHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC--CEEEEccC
Q 015895 186 EG---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPV 245 (398)
Q Consensus 186 ~~---fG~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~sl~ell~~a--DiV~l~~P 245 (398)
.+ .|. +++.+|+.. .. .+..+...|.. . ......+ ....+|.|+++.+ |+++-+-
T Consensus 316 ~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~---~-~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S- 390 (563)
T PRK13529 316 AAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR---K-REELADWDTEGDVISLLEVVRNVKPTVLIGVS- 390 (563)
T ss_pred HHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh---h-cccccccccccCCCCHHHHHhccCCCEEEEec-
Confidence 32 466 788888762 11 12222222211 1 0000001 0124799999988 9987533
Q ss_pred CChhhhhhccHHHHhcCCC---CcEEEEcCCCchhcHHHHHHHHh--cCC-ccEEEeccCCCCCCCC--CCCCCCCceEE
Q 015895 246 LDKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK--PGLSEMKNAIV 317 (398)
Q Consensus 246 lt~~T~~li~~~~~~~mk~---gailIN~aRG~~vde~aL~~aL~--~g~-i~gAalDV~~~EP~~~--~~L~~~~nvil 317 (398)
..-+.|.++.++.|.+ ..++.=.|....--|-.-.+|.+ +|+ |.+.|.- |.+-.... ..--+-.|+++
T Consensus 391 ---~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f~pv~~~G~~~~p~Q~NN~~i 466 (563)
T PRK13529 391 ---GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-FAPVEYNGKTYPIGQCNNAYI 466 (563)
T ss_pred ---CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-CCCeeeCCeEeccCcCcceee
Confidence 2247899999999987 89999988876532322233333 354 4443331 11000000 01123458999
Q ss_pred cCCCCCCcHH-----HHHHHHHHHHHHHHHHHcCC
Q 015895 318 VPHIASASKW-----TREGMATLAALNVLGKIKGY 347 (398)
Q Consensus 318 TPHia~~T~e-----a~~~~~~~~~~ni~~~l~g~ 347 (398)
-|-++-.... --+.|...+++.+.....-+
T Consensus 467 FPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~ 501 (563)
T PRK13529 467 FPGLGLGVIASGARRVTDGMLMAAAHALADCVPLA 501 (563)
T ss_pred cccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccc
Confidence 9987653211 11445555556555554433
No 449
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.35 E-value=2.6 Score=41.15 Aligned_cols=94 Identities=20% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHh-----hc
Q 015895 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVL-----RE 236 (398)
Q Consensus 164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell-----~~ 236 (398)
.|.+|.|.| .|.+|+..++.+ +.+|++|++.+++.... + + ++..|....-.... .++.+.. ..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~-~-~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV-A-Y-------LKKLGFDVAFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-H-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence 478999999 599999999985 89999999888765432 1 1 11222211100000 1232222 13
Q ss_pred CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
.|+|+-++.. .. + ...++.++++..+|.++.
T Consensus 208 vdvv~d~~G~----~~-~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVGG----EF-S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCCH----HH-H-HHHHHHhCcCcEEEEecc
Confidence 5677665541 11 2 456777888888887754
No 450
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.32 E-value=0.7 Score=35.76 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=29.3
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
++.|||-|.+|-++|..+ ..+|.+|..+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence 578999999999999998 689999999987654
No 451
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.32 E-value=1.1 Score=42.91 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=44.8
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc-CC
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD 238 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~-aD 238 (398)
+|.|+|. |.||+.+++.| ..-|.+|.+..|+++..... ........+....++.+.+ .. +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence 3678887 99999999998 56799999998876532100 0000011122234566666 45 89
Q ss_pred EEEEccCCC
Q 015895 239 VISLHPVLD 247 (398)
Q Consensus 239 iV~l~~Plt 247 (398)
.|+++.|..
T Consensus 70 ~v~~~~~~~ 78 (285)
T TIGR03649 70 AVYLVAPPI 78 (285)
T ss_pred EEEEeCCCC
Confidence 998887754
No 452
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=89.28 E-value=2.1 Score=42.93 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=24.9
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~ 197 (398)
.+|||=|||+||+.+.|.+...-+.+|++.+.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd 34 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND 34 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEec
Confidence 37999999999999999753234678876654
No 453
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.25 E-value=4 Score=40.94 Aligned_cols=110 Identities=19% Similarity=0.294 Sum_probs=61.0
Q ss_pred eEEEEecChhHHHHHHHHHhcC---CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEE
Q 015895 167 TVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI 240 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~f---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a--DiV 240 (398)
+.||+|+|+|++..++.+ ... ++.|+ ++||+..... .+.+ +.+.. ....+.|.|||++.. |+|
T Consensus 8 r~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~A~-~fAq-------~~~~~--~~k~y~syEeLakd~~vDvV 76 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLERAK-EFAQ-------RHNIP--NPKAYGSYEELAKDPEVDVV 76 (351)
T ss_pred EEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHHHH-HHHH-------hcCCC--CCccccCHHHHhcCCCcCEE
Confidence 699999999999999987 433 56554 5677554322 2211 11211 112356899999776 999
Q ss_pred EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCc
Q 015895 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM 291 (398)
Q Consensus 241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i 291 (398)
.+..|.... +.+. .+..-+...+|+.---.-- -+.+.+++|.+...+
T Consensus 77 yi~~~~~qH-~evv---~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 77 YISTPNPQH-YEVV---MLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred EeCCCCccH-HHHH---HHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 999885433 2221 1111223335544332222 223346676666553
No 454
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=89.23 E-value=16 Score=36.04 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=65.0
Q ss_pred cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~ 241 (398)
++|+++..+|=| +|+.++.... ..|||+|....|..-.-.+.+.+.-.......| ..+....++++.++.||+|.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t~d~~eAv~gADvvy 226 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLTEDPEEAVKGADVVY 226 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEecCHHHHhCCCCEEE
Confidence 999999999986 5777777664 589999988776532211111111000011111 12334468999999999996
Q ss_pred EccC--CChhhh-----------hhccHHHHhcCCCCcEEEEc
Q 015895 242 LHPV--LDKTTY-----------HLINKERLATMKKEAILVNC 271 (398)
Q Consensus 242 l~~P--lt~~T~-----------~li~~~~~~~mk~gailIN~ 271 (398)
.-+. ...+.+ --+|++.++..+++++|.-|
T Consensus 227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 4332 212221 23578888888888888887
No 455
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.20 E-value=3 Score=40.94 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.|.+|.|.|.|.+|+.+++.+ +.+|.+|++.++...
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChH
Confidence 567999999999999999985 899999999988653
No 456
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.16 E-value=5.7 Score=41.01 Aligned_cols=114 Identities=19% Similarity=0.200 Sum_probs=64.7
Q ss_pred cCC-CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhhcCCE
Q 015895 163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADV 239 (398)
Q Consensus 163 l~g-ktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell~~aDi 239 (398)
+.+ +++.|||+|.+|.+.++.|.+.-| .+|.++|.......... ++. + ..+... .+. +.+.++|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~-g---~~~~~g~~~~-~~~~~~d~ 71 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE-D---VELHSGGWNL-EWLLEADL 71 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc-C---CEEEeCCCCh-HHhccCCE
Confidence 445 789999999999999998854444 89999997543211110 111 1 111111 133 34578998
Q ss_pred EEEcc--CC-Chhhh-------hhccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 240 V~l~~--Pl-t~~T~-------~li~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
|+... |. +|+-. .++.+ +.+ ..++...+-|-=+-|..--..=|...|+.
T Consensus 72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 87664 32 22211 12322 232 23444456666677887766667777764
No 457
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.08 E-value=1.2 Score=45.68 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 015895 163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232 (398)
Q Consensus 163 l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e 232 (398)
.+|++|+|+|+. .-...+++.| ...|.+|.+|||...... . .+.....++.+
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-~----------------~~~~~~~~~~~ 355 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-F----------------FNSRLERDLAT 355 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-h----------------cCCeeeCCHHH
Confidence 478999999993 5577899998 689999999999854321 0 12334578999
Q ss_pred HhhcCCEEEEccC
Q 015895 233 VLREADVISLHPV 245 (398)
Q Consensus 233 ll~~aDiV~l~~P 245 (398)
.++.||.|++..-
T Consensus 356 ~~~~~~~~~~~~~ 368 (388)
T PRK15057 356 FKQQADVIISNRM 368 (388)
T ss_pred HHHhCCEEEEcCC
Confidence 9999999998764
No 458
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.01 E-value=1.1 Score=41.36 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.5
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
+.++++.|+|. |.||+.++++|+ ..|.+|++.++.+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~ 42 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE 42 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence 56789999985 999999999984 679999999987643
No 459
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.01 E-value=2.2 Score=41.59 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=57.8
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhcC
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA 237 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~--el--l~~a 237 (398)
..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++.... +. ... .+....-.....+.. .. -...
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~-~~-~~~-------~g~~~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL-EL-AKK-------LGATETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-HH-HHH-------hCCeEEecCCCCCHHHHHHhcCCCC
Confidence 3567999999999999999985 899997 88887765432 11 111 111100000001111 11 1357
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~ 275 (398)
|+++-+++.. -...+.+..|+++..+|+++..+
T Consensus 228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence 8888776521 12345577788888888887644
No 460
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.00 E-value=5.6 Score=41.12 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=66.1
Q ss_pred eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-ccc-ccCCHHHHhhcCCEEEEcc
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWK-RASSMDEVLREADVISLHP 244 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~sl~ell~~aDiV~l~~ 244 (398)
+|.|||+|..|.+.|+.| ...|.+|.++|....+......+ .+.+.+..-. +.. ....+.+.+.+.|.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 589999999999999987 68999999999876443211000 1122221100 000 0011224678899988754
Q ss_pred CCChhhhh----------hccHH-H-HhcCCC-CcEEEEcCCCchhcHHHHHHHHhc
Q 015895 245 VLDKTTYH----------LINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 245 Plt~~T~~----------li~~~-~-~~~mk~-gailIN~aRG~~vde~aL~~aL~~ 288 (398)
...++..- ++.+- . ...+++ ..+-|--+.|..--..=|...|+.
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 33332211 12222 2 233333 356666677887777766777765
No 461
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.95 E-value=3.1 Score=46.62 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=68.1
Q ss_pred CeEEEEecChhHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895 166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244 (398)
Q Consensus 166 ktvGIIGlG~IG~~v-A~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~ 244 (398)
+++.|+|+|.+|.+. |+.| ...|++|.++|....+..+. ++..+. .+..-. ..+.+..+|+|+...
T Consensus 5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~-~~~~~~~~d~vV~Sp 71 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGH-QEEHVPEDAVVVYSS 71 (809)
T ss_pred ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCC-CHHHcCCCCEEEECC
Confidence 359999999999998 9987 79999999999765433222 222221 111111 235567899998764
Q ss_pred CCChhhh----------hhccHH-HHhc-CCC-CcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895 245 VLDKTTY----------HLINKE-RLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP 290 (398)
Q Consensus 245 Plt~~T~----------~li~~~-~~~~-mk~-gailIN~aRG~~vde~aL~~aL~~g~ 290 (398)
.-.+++. .++++- .+.. ++. ..+-|--+.|..--..=+...|+...
T Consensus 72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 3322222 123332 2233 332 35667767788877776777777643
No 462
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.87 E-value=1.6 Score=40.42 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=34.0
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
++.|+++.|+|. |.||+.+|+.+ ...|++|+..+++...
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~ 41 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 378999999998 99999999998 5789999999987643
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=88.83 E-value=3 Score=39.37 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
.++||++.|.|. |.||+++|+.| ...|++|+..+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 478999999997 99999999998 478999999998764
No 464
>PRK14851 hypothetical protein; Provisional
Probab=88.82 E-value=0.89 Score=49.85 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.0
Q ss_pred cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY 198 (398)
Q Consensus 161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~ 198 (398)
..|++++|+|+|+|.+|+.+|+.|+ ..|. ++...|..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcCC
Confidence 4589999999999999999999985 4554 67777644
No 465
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.59 E-value=3.3 Score=41.07 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~ 201 (398)
.|.+|.|+|.|.||...++.+++.+| .+|++.|++..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k 201 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK 201 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence 47899999999999998876522354 689999987643
No 466
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.54 E-value=1.9 Score=40.86 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChhh
Q 015895 164 KGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQAT 201 (398)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~~ 201 (398)
+++++.|.|. |.||+++|+.++ .. |++|+..+++.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~-~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYL-KNAPARVVLAALPDDP 45 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-hcCCCeEEEEeCCcch
Confidence 4678999986 899999999984 55 5899999887654
No 467
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.53 E-value=2.4 Score=40.20 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=33.2
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
++.|+++.|.|. |.||+.+|+.| ...|++|+..+++...
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 41 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL 41 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence 467899999997 89999999998 4789999999887643
No 468
>PRK05717 oxidoreductase; Validated
Probab=88.49 E-value=3 Score=39.15 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=33.6
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
..+.||++.|.|. |.||+.+|+.|+ ..|++|+..++...
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~-~~g~~v~~~~~~~~ 45 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRE 45 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHH-HcCCEEEEEcCCHH
Confidence 3588999999996 899999999984 67999999987654
No 469
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=88.49 E-value=3.1 Score=40.85 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHH----HHhh-cC
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMD----EVLR-EA 237 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~----ell~-~a 237 (398)
.|++|.|.|.|.+|+.+++.+ +.+|++|++.+++.... + +... .+....-.... .++. .+.. ..
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~-~-~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKL-E-LARE-------LGAVATVNASEVEDVAAAVRDLTGGGA 234 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHH-H-HHHH-------hCCCEEEccccchhHHHHHHHHhCCCC
Confidence 578999999999999999985 89999999987765432 1 1111 12111000000 1221 1221 47
Q ss_pred CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
|+++-++.. .. .-...+..++++..+|+++.
T Consensus 235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCC
Confidence 777766542 11 12346777888888888765
No 470
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.47 E-value=4.8 Score=36.80 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=33.6
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+.||++.|.|- |.||+.+++.++ .-|++|+..+++..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~-~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH-HCCCeEEEEeCChHh
Confidence 478999999986 999999999984 669999999987654
No 471
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=88.43 E-value=4.3 Score=40.12 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=48.0
Q ss_pred cCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 163 l~gktvGIIG---lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
+.|++|+|+| .|+.-++.++.| ..||++|....|..=.-.+.+.+. +...+ ..+......+|.++++|+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV 227 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV 227 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence 9999999999 799999999998 799999999987531111111111 11111 112234456669999999
Q ss_pred EE
Q 015895 240 IS 241 (398)
Q Consensus 240 V~ 241 (398)
+.
T Consensus 228 l~ 229 (316)
T COG0540 228 LY 229 (316)
T ss_pred EE
Confidence 94
No 472
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.42 E-value=5.2 Score=41.39 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHH-HHHHHHh---cCC-cEEEEEcCC-hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~-vA~~la~---~fG-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
++|.|||.|..-.. +.+-+++ .++ -+|..||.. +.. ++. ...+...+......+..+....++++.+..|||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf 78 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF 78 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 47999999997432 3333322 344 689999998 443 211 111111122222223345556789999999999
Q ss_pred EEEccCCCh-hh----------hhhc-------------------c---HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 240 ISLHPVLDK-TT----------YHLI-------------------N---KERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 240 V~l~~Plt~-~T----------~~li-------------------~---~~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
|+++.-... +. +|++ - .+.+....|++++||.+-.-=+-..++.+..
T Consensus 79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~ 158 (419)
T cd05296 79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT 158 (419)
T ss_pred EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence 987753222 11 1111 0 1123334689999999987656666666655
Q ss_pred hcCCccEE
Q 015895 287 KQNPMFRV 294 (398)
Q Consensus 287 ~~g~i~gA 294 (398)
..++.|.
T Consensus 159 -~~rviGl 165 (419)
T cd05296 159 -GDRVIGL 165 (419)
T ss_pred -cCCEEee
Confidence 4456565
No 473
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.29 E-value=2.9 Score=39.63 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=31.1
Q ss_pred ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
.+.||++.|.|- +.||+++|+.|+ ..|++|+..++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la-~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLH-NAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEecCc
Confidence 478999999997 589999999985 789999988764
No 474
>PLN03075 nicotianamine synthase; Provisional
Probab=88.27 E-value=1.9 Score=42.48 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCC-CccccccCCHHHH---hhcC
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEV---LREA 237 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~sl~el---l~~a 237 (398)
..++|..||.|..|-.-.-.++. .-+.+++++|.++...... .. .+++ .+.. ...+.. .++.+. +.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A--r~---~~~~~~gL~~rV~F~~-~Da~~~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA--RR---LVSSDPDLSKRMFFHT-ADVMDVTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HH---HhhhccCccCCcEEEE-CchhhcccccCCc
Confidence 78999999999987755443322 2356899999988652111 00 0111 1111 122222 233222 4689
Q ss_pred CEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895 238 DVISLHP--VLDKTTYHLINKERLATMKKEAILVNC 271 (398)
Q Consensus 238 DiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~ 271 (398)
|+|++.+ ..+++.+.-+-+...+.|+||++++=-
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9998773 113345555667888999999988864
No 475
>PLN02427 UDP-apiose/xylose synthase
Probab=88.26 E-value=0.88 Score=45.89 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=34.1
Q ss_pred cccccCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh
Q 015895 159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA 200 (398)
Q Consensus 159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~ 200 (398)
.|+.++.|+|.|.|. |-||+.++++|. .- |.+|+++|+...
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~ 50 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND 50 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence 466788899999995 999999999984 55 589999997653
No 476
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.09 E-value=2.9 Score=40.58 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=34.5
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.++.||++.|.|. |.||+.+|+.|+ ..|++|+..+++...
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~-~~G~~vi~~~r~~~~ 52 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALA-AKGAHVVLAVRNLDK 52 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence 4689999999996 999999999984 679999999887644
No 477
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=88.06 E-value=6.3 Score=40.38 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=61.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-c-CC----cEEEEE--cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895 166 QTVGVIGA-GRIGSAYARMMVE-G-FK----MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236 (398)
Q Consensus 166 ktvGIIGl-G~IG~~vA~~la~-~-fG----~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~ 236 (398)
.+|+|||. |++|..+|-.++. + ++ ..++.+ |...+.....-.+....... .. . ......+-.+.+++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~-~~-~--~v~i~~~~y~~~kd 120 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP-LL-R--EVSIGIDPYEVFED 120 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh-hc-C--ceEEecCCHHHhCC
Confidence 47999999 9999999987742 2 22 134444 66554322222221111100 00 0 11111233466899
Q ss_pred CCEEEEccCC--Ch-hhhh-hc--cH----H---HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895 237 ADVISLHPVL--DK-TTYH-LI--NK----E---RLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ 288 (398)
Q Consensus 237 aDiV~l~~Pl--t~-~T~~-li--~~----~---~~~~-mk~gailIN~aRG~~vde~aL~~aL~~ 288 (398)
||+|++..-. .+ +||. ++ |. + .+.. .++.+++|.++ .++|.-+.+-.-.+
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~k~s 184 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAMKNA 184 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 9999987533 22 2321 11 11 1 2223 45889999887 56666665444333
No 478
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.98 E-value=2.5 Score=41.76 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=55.4
Q ss_pred CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243 (398)
Q Consensus 164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~ 243 (398)
.|.+|.|.|.|.+|...++. ++.+|++|++.+++.... + + +++.|..... ...++.-...|+++.+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~-------a~~~Ga~~vi----~~~~~~~~~~d~~i~~ 230 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-L-------ALALGAASAG----GAYDTPPEPLDAAILF 230 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-H-------HHHhCCceec----cccccCcccceEEEEC
Confidence 47899999999999988887 489999999988876542 1 1 1222321110 0001111245766665
Q ss_pred cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 244 PVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
... .+ . -...++.++++..++.++.
T Consensus 231 ~~~-~~---~-~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 231 APA-GG---L-VPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCc-HH---H-HHHHHHhhCCCcEEEEEec
Confidence 543 12 1 2456777888888877653
No 479
>PRK06841 short chain dehydrogenase; Provisional
Probab=87.98 E-value=3.2 Score=38.76 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=33.5
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
++.||++.|.|. |.||+.+|++| ...|++|+..++...
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence 588999999996 99999999998 478999999988754
No 480
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=87.98 E-value=4.5 Score=41.96 Aligned_cols=126 Identities=10% Similarity=0.194 Sum_probs=72.4
Q ss_pred CeEEEEecChhHHH--HHHHHHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 166 QTVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIGlG~IG~~--vA~~la~---~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
++|.|||-|.. .. +.+-+.+ .+ +-+|..||..+... +. ...+...+......+..+....+.++.++.|||
T Consensus 1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 47999999985 32 2332221 34 36899999887432 11 112222222222223445566789999999999
Q ss_pred EEEccCCCh-h----------hhhhccH----------------------HHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895 240 ISLHPVLDK-T----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL 286 (398)
Q Consensus 240 V~l~~Plt~-~----------T~~li~~----------------------~~~~~mk~gailIN~aRG~~vde~aL~~aL 286 (398)
|+..+--.. + -+|++.. +.+....|++++||.+-.-=+-..++.+..
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~ 157 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV 157 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC
Confidence 988764322 1 1122211 123334689999999987666666776665
Q ss_pred hcCCccEE
Q 015895 287 KQNPMFRV 294 (398)
Q Consensus 287 ~~g~i~gA 294 (398)
...++.|.
T Consensus 158 p~~rviG~ 165 (425)
T cd05197 158 PPEKAVGL 165 (425)
T ss_pred CCCcEEEE
Confidence 33345443
No 481
>PRK08628 short chain dehydrogenase; Provisional
Probab=87.97 E-value=1.3 Score=41.50 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=33.6
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
..+.|+++.|.|. |.||+.+|+.| ...|++|++.++..+.
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~ 43 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD 43 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence 3588999999995 78999999998 4789999988876643
No 482
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=87.96 E-value=1.4 Score=40.87 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=29.7
Q ss_pred ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 162 ~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
.+.++++-|.| .|.||+.+|+++ ...|++|++..+.
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~ 39 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNS 39 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCC
Confidence 36789999999 599999999998 4789999875443
No 483
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=87.95 E-value=2 Score=43.12 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=23.0
Q ss_pred eEEEEecChhHHHHHHHHHh-cC--CcEEEEEcC
Q 015895 167 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYDL 197 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~-~f--G~~V~~~d~ 197 (398)
+|||.|+|+||+.+.|.|.. .| ..++++.+.
T Consensus 3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind 36 (336)
T PRK13535 3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE 36 (336)
T ss_pred EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 79999999999999998632 22 456665543
No 484
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=87.90 E-value=2.8 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=24.6
Q ss_pred CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCCh
Q 015895 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ 199 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~ 199 (398)
.+|||.|+|+||+.+.+.+...-++++.+. |+..
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~ 37 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAG 37 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 479999999999999998633335676544 4443
No 485
>PRK06196 oxidoreductase; Provisional
Probab=87.90 E-value=2.7 Score=41.03 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=33.8
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.+.||++.|.|. |.||+++|+.| ...|++|++.+++...
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~ 62 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV 62 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence 578999999998 88999999998 4789999999987643
No 486
>PRK08862 short chain dehydrogenase; Provisional
Probab=87.86 E-value=2.3 Score=39.75 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=33.3
Q ss_pred ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
+++||++.|.|.+. ||+++|+++ ...|++|+..+++...
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence 47899999999865 999999998 4789999999887643
No 487
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.78 E-value=1 Score=44.85 Aligned_cols=107 Identities=22% Similarity=0.241 Sum_probs=59.4
Q ss_pred eEEEEec-ChhHHHHHHHHHhcCC-------cEEEEEcCChhhH-HHH-HHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895 167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEK-FVTAYGQFLKANG-EQPVTWKRASSMDEVLR 235 (398)
Q Consensus 167 tvGIIGl-G~IG~~vA~~la~~fG-------~~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~ 235 (398)
+|+|+|. |.+|+.+|..|. ..+ .++..+|+..... ... ..+ +.+.. ..........++.+.++
T Consensus 4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D-----l~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVME-----LQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeee-----hhhccccccCCceecCCHHHHhC
Confidence 6999999 999999999874 322 4899999854321 111 000 00000 00001111246778889
Q ss_pred cCCEEEEccCCCh---hhh-hhc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q 015895 236 EADVISLHPVLDK---TTY-HLI--NK-------ERLATM-KKEAILVNCSRGPVIDEVA 281 (398)
Q Consensus 236 ~aDiV~l~~Plt~---~T~-~li--~~-------~~~~~m-k~gailIN~aRG~~vde~a 281 (398)
.||+|+.+.-... +++ .++ |. ..+... ++++++|.++ .++|.-.
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 9999987654321 222 222 11 233344 5788898887 4555544
No 488
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.76 E-value=3.3 Score=38.99 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=34.0
Q ss_pred cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
..+.||++.|.|. |.||+++|+.+ ...|++|+..+++..
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l-~~~G~~V~~~~r~~~ 43 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELL-LEAGASVAICGRDEE 43 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHH
Confidence 3588999999998 68999999998 578999999998764
No 489
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.75 E-value=3.9 Score=40.76 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=32.1
Q ss_pred cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
-.|.+|.|.|. |.+|+..++.+ +.+|++|++.+++...
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k 195 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQK 195 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence 35789999999 99999999985 8999999988876543
No 490
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=87.69 E-value=3.9 Score=38.87 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=57.7
Q ss_pred eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-c-ccc-
Q 015895 167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT-W-KRA- 227 (398)
Q Consensus 167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~-~-~~~- 227 (398)
+|.|||.|.+|.++++.|+ ..|. ++...|...-+. + +++ .+.....+...... ... . ...
T Consensus 1 kVlvvG~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4899999999999999985 4454 677777653210 0 110 00000111111100 000 0 011
Q ss_pred --CC-HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895 228 --SS-MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274 (398)
Q Consensus 228 --~s-l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG 274 (398)
.+ .++.+++.|+|+.++- +.+++..+++..... +.-+|+.+..
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~---~iplI~~g~~ 125 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFL---IVPLIESGTE 125 (234)
T ss_pred hhhhchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEccc
Confidence 11 2467899999999886 467788888766654 3457777654
No 491
>PRK09242 tropinone reductase; Provisional
Probab=87.65 E-value=3.5 Score=38.63 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=33.4
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT 201 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~ 201 (398)
.++||++.|.|. |.||+.+|+++ ...|++|+..++..+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~~ 45 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREF-LGLGADVLIVARDADA 45 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence 478999999986 89999999998 5789999999887543
No 492
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=87.63 E-value=1.7 Score=43.76 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=50.5
Q ss_pred CCCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 164 ~gktvGIIGl-G~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
...+|+|+|. |.+|+++.+.| ...++ ++.+.....+.. + .....+ ....+.. .+. +.+.++|+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL-~~~~hP~~~l~~las~rsaG--k-------~~~~~~-~~~~v~~-~~~-~~~~~~D~ 72 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVL-TDRDFPYSSLKMLASARSAG--K-------KVTFEG-RDYTVEE-LTE-DSFDGVDI 72 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHH-HhCCCCcceEEEEEccCCCC--C-------eeeecC-ceeEEEe-CCH-HHHcCCCE
Confidence 4468999997 99999999998 44332 443332221110 0 001111 1111111 123 44589999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a 272 (398)
|++++|.. .+..+.- + ..+.|+.+||.|
T Consensus 73 vf~a~p~~-~s~~~~~-~---~~~~g~~VIDlS 100 (344)
T PLN02383 73 ALFSAGGS-ISKKFGP-I---AVDKGAVVVDNS 100 (344)
T ss_pred EEECCCcH-HHHHHHH-H---HHhCCCEEEECC
Confidence 99999953 3333322 1 124689999998
No 493
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=87.60 E-value=10 Score=38.40 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=81.2
Q ss_pred eCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCC-C-C---HHHHHHHh-cCCCcEEEecCCccccHHHHHHhh
Q 015895 10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALI-GDKCDGVIGQLTEDWGETLFAALS 83 (398)
Q Consensus 10 ~~~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~---~eel~~~~-~~~~d~vi~~~~~~~~~~~l~~~~ 83 (398)
..|....||+||.+-......+.|++.|.++...+.-+.. . . -++....+ ..++|.++..|..-+ +.+++.+.
T Consensus 6 ~~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv-~~~~~~l~ 84 (381)
T PRK07239 6 SAPLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGF-RGWVEAAD 84 (381)
T ss_pred CCCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHH-HHHHHHHH
Confidence 4577788999997543344677888888887554211110 0 1 12222233 235899887765332 22333222
Q ss_pred cc-----------CCceEEEeeccccccCchHhhhcCceEEecCCC-CCchHHHHHHHHHHHHhhchHHHHHHHHcCccC
Q 015895 84 RA-----------GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYD 151 (398)
Q Consensus 84 ~l-----------~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~-~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~ 151 (398)
+. +++++ ..|-+. -+++.+.|+.+.-.|.. +++..++... .
T Consensus 85 ~~~~~~~~~~~l~~~~i~-aVG~~T----a~aL~~~G~~~~~~p~~~~~e~L~~~l~------------------~---- 137 (381)
T PRK07239 85 GWGLADELLEALSSARLL-ARGPKA----TGAIRAAGLREEWSPASESSAEVLEYLL------------------E---- 137 (381)
T ss_pred HcCChHHHHHHHcCCeEE-EECccH----HHHHHHcCCCCccCCCCCccHHHHHHHh------------------c----
Confidence 21 11332 233332 24567899987666543 3333333211 0
Q ss_pred CCCCCcccccccCCCeEEEEecC-----hhHHHHHHHHHhcCCcEEEEEcCC
Q 015895 152 GWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDLY 198 (398)
Q Consensus 152 ~w~~~~~~g~~l~gktvGIIGlG-----~IG~~vA~~la~~fG~~V~~~d~~ 198 (398)
....|++|.|.-.| .....+++.| +..|++|....-|
T Consensus 138 ---------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~vY 179 (381)
T PRK07239 138 ---------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPVY 179 (381)
T ss_pred ---------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCcE
Confidence 12567889887655 3334688887 6888876654433
No 494
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.52 E-value=4.2 Score=39.52 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=58.0
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhcCCEEE
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS 241 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~ell~~aDiV~ 241 (398)
-.|.+|.|.|.|.+|+.+++.+ +.+|.+|++.+++.... +. .. ..+..........+. .......|+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~-~~-~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKR-EL-AR-------KLGADEVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HH-------HhCCcEEeccCCcchHHhccCCCCEEE
Confidence 3467899999999999988875 89999999998876542 11 11 111111000000011 11123578888
Q ss_pred EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR 273 (398)
Q Consensus 242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR 273 (398)
-++... . ...+.+..++++..+|+++.
T Consensus 231 ~~~~~~-~----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 231 VTVVSG-A----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ECCCcH-H----HHHHHHHhcccCCEEEEECC
Confidence 766421 1 23556788888889988864
No 495
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.51 E-value=3.1 Score=39.13 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=32.6
Q ss_pred ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895 162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA 200 (398)
Q Consensus 162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~ 200 (398)
++.||++.|.|. |.||+++|++|+ ..|++|+..++...
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~-~~G~~vv~~~~~~~ 43 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLA-KAGADIVGVGVAEA 43 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCchH
Confidence 478999999996 899999999984 78999999887643
No 496
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=87.46 E-value=1.6 Score=46.37 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=102.3
Q ss_pred cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895 161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 161 ~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi 239 (398)
..+.||+..++|--. +|..+|..| +.....|..+-.. -.++.|.+.++|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI 208 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI 208 (935)
T ss_pred CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence 569999999999866 488899987 6778888765321 2468888999999
Q ss_pred EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTP 319 (398)
|++++-. .+++-.+ .+|||+++|||+---+-|.. -++|. -..=||-.++-- .. --.+||
T Consensus 209 vIvAiG~----PefVKgd---WiKpGavVIDvGINyvpD~~-----Kksg~--klvGDVdfe~Ak---ev----as~ITP 267 (935)
T KOG4230|consen 209 VIVAIGQ----PEFVKGD---WIKPGAVVIDVGINYVPDPS-----KKSGF--KLVGDVDFESAK---EV----ASFITP 267 (935)
T ss_pred EEEEcCC----cceeecc---cccCCcEEEEccccccCCCC-----Ccccc--eEeeecchHhhh---hh----hhcccc
Confidence 9999864 2333222 36899999999875544422 12221 245577554421 11 126889
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCcCCCCCCC---CCCCCCCCChHHHHHHHhhh
Q 015895 320 HIASASKWTREGMATLAALNVLGKIKGYP-----IWGNPNQVEPFLNE---NAQPPAASPSIVNSKALGKI 382 (398)
Q Consensus 320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~-----~~~~vn~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 382 (398)
-=||--.-+..-+-+-+.+...+++.+.. ..+.+ +++..++. -.-...-++.=.||+.||..
T Consensus 268 VPGGVGPMTVAMLmqNtveaAKR~r~es~~~~~i~~~pl-~l~tpvpsdidisrsq~pk~i~~la~e~gi~ 337 (935)
T KOG4230|consen 268 VPGGVGPMTVAMLMQNTVEAAKRQREESKKKRKIDLLPL-KLKTPVPSDIDISRSQEPKLIGQLAKELGIY 337 (935)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhccccCcCCCCcc-ccCCCCCcccchhhccCcchHHHHHHHhchh
Confidence 87776555544444555555555554322 11222 11111111 11122336667889988864
No 497
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.41 E-value=1.6 Score=45.36 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=34.3
Q ss_pred ccccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895 158 FVGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ 199 (398)
Q Consensus 158 ~~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~ 199 (398)
..|..-++|+|.|.|- |-||+.+++.| ...|.+|++.|+..
T Consensus 112 ~~~~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~~ 153 (442)
T PLN02206 112 PLGLKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNFF 153 (442)
T ss_pred ccccccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence 4555667899999995 99999999998 57899999998653
No 498
>PLN02740 Alcohol dehydrogenase-like
Probab=87.38 E-value=3.9 Score=41.20 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=31.9
Q ss_pred cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh
Q 015895 163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA 200 (398)
Q Consensus 163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~ 200 (398)
-.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+...
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPE 234 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChH
Confidence 3588999999999999999985 89999 6999888654
No 499
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.37 E-value=3.1 Score=41.85 Aligned_cols=97 Identities=9% Similarity=0.168 Sum_probs=51.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhh---hcC-CCCccccccCCHHHHhhcCCE
Q 015895 166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLK---ANG-EQPVTWKRASSMDEVLREADV 239 (398)
Q Consensus 166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~sl~ell~~aDi 239 (398)
.+|+|+| .|.+|+++++.|. .+ .+++.++..+.+..-..+.+.+ .... ..+ .....+. ..+.++ +.++|+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~-~~p~~el~~~~~s~~~~G~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~Dv 79 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLA-NHPWFEVTALAASERSAGKTYGEAV-RWQLDGPIPEEVADMEVV-STDPEA-VDDVDI 79 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHH-cCCCceEEEEEcChhhcCCcccccc-cccccccccccccceEEE-eCCHHH-hcCCCE
Confidence 5899998 8999999999984 44 4588877433322110000000 0000 000 0011111 124444 478999
Q ss_pred EEEccCCChhhhhhccHHHHhcC-CCCcEEEEcC
Q 015895 240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS 272 (398)
Q Consensus 240 V~l~~Plt~~T~~li~~~~~~~m-k~gailIN~a 272 (398)
|+.++|.. .+..+. ..+ +.|..+|+.+
T Consensus 80 Vf~a~p~~-~s~~~~-----~~~~~~G~~vIDls 107 (349)
T PRK08664 80 VFSALPSD-VAGEVE-----EEFAKAGKPVFSNA 107 (349)
T ss_pred EEEeCChh-HHHHHH-----HHHHHCCCEEEECC
Confidence 99999953 222222 222 4577777765
No 500
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=87.32 E-value=2.8 Score=42.99 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=24.3
Q ss_pred CeEEEEecChhHHHHHHHHHh-cC-CcEEEEEcC
Q 015895 166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL 197 (398)
Q Consensus 166 ktvGIIGlG~IG~~vA~~la~-~f-G~~V~~~d~ 197 (398)
.+|||.|+|+||+.+.|.+.. .| ..+|++.+.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 489999999999999998642 22 457775543
Done!