BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015899
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TSM|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
pdb|3TSM|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
From Brucella Melitensis
Length = 272
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 156/273 (57%), Gaps = 9/273 (3%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
G+ +IL +I +K E+ K R L LK + R F+ AL A + G AL
Sbjct: 3 GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKAL-EAKRAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
IAE+KKASPS+G++R DFDP +A++YE+GGAACLS+LTD F+G+ E L A R A
Sbjct: 62 IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
P L K+F+ D +Q+Y AR+ GAD +L+I A + D + + LG+ AL+EVHDE
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD 359
EM+R +FEV+ + +++L + + + ++VGESG+FT +
Sbjct: 181 EMERA-LKLSSRLLGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLVGESGIFTHE 233
Query: 360 DIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392
D ++++G+ L+GES+++Q D L
Sbjct: 234 DCLRLEKSGIGTFLIGESLMRQHDVAAATRALL 266
>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) Complex With
N-2-Carboxyphenyl Glycine (Cpg)
pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Indole Glycerol Phosphate (Igp) Amd Anthranilate
pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
Phenoxymethyl Benzoic Acid (Pmba)
pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
Glycerol Phosphate Synthase (Igps) In Complex With
5-Fluoroanthranilate
Length = 272
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 144/271 (53%), Gaps = 13/271 (4%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
+P +L+ I+ +V + LS +K A APP D +MAA + G+ +IA
Sbjct: 2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLD----VMAALREPGI-GVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
EVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A V P
Sbjct: 57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-ASVSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
+L K+F+V +QI+ AR GAD +LLI A L + M + LG+TALVEVH E+E
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 361
DR T +VD ++ G +IR + ESG+ D+
Sbjct: 176 DR-ALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIR------IAESGVRGTADL 228
Query: 362 AYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392
AG AVLVGE +V DP + L
Sbjct: 229 LAYAGAGADAVLVGEGLVTSGDPRAAVADLV 259
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 138/262 (52%), Gaps = 21/262 (8%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
+ +L +IV K + V KQ++PL+ +N + P R F AL A RT A I E
Sbjct: 2 QTVLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
KKASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+L
Sbjct: 55 KKASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
CK+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
Query: 304 VXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 363
+D + T++L + G N+ V+ ESG+ T A
Sbjct: 173 A-IALGAKVVGINNRDLRDLSIDLNRTRELAP-KLGH-----NVTVISESGINT---YAQ 222
Query: 364 VQEAG--VKAVLVGESIVKQDD 383
V+E L+G +++ DD
Sbjct: 223 VRELSHFANGFLIGSALMAHDD 244
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 137/260 (52%), Gaps = 21/260 (8%)
Query: 126 ILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKK 185
+L +IV K + V KQ++PL+ +N + P R F AL A RT A I E KK
Sbjct: 4 VLAKIVADKAIWVEARKQQQPLASFQNEVQ--PSTRHFYDALQGA--RT---AFILECKK 56
Query: 186 ASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK 245
ASPS+G++R+DFDP IA Y K A+ +S+LTDEKYF+GSF L V + P+LCK
Sbjct: 57 ASPSKGVIRDDFDPARIAAIY-KHYASAISVLTDEKYFQGSFNFLPIVSQIAPQ-PILCK 114
Query: 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVX 305
+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 115 DFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERA- 173
Query: 306 XXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 365
+D + T++ L + G N+ V+ ESG+ T A V+
Sbjct: 174 IALGAKVVGINNRDLCDLSIDLNRTRE-LAPKLGH-----NVTVISESGINT---YAQVR 224
Query: 366 EAG--VKAVLVGESIVKQDD 383
E L+G +++ DD
Sbjct: 225 ELSHFANGFLIGSALMAHDD 244
>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
Form Mycobacterium Tuberculosis
Length = 275
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 142/275 (51%), Gaps = 13/275 (4%)
Query: 118 NEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP 177
+ +P +L+ I+ +V + LS +K A APP D AL + G+
Sbjct: 1 SNAXSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVXAAL----REPGI- 55
Query: 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG 237
+IAEVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR A
Sbjct: 56 GVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVR-AS 114
Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
V P+L K+F+V +QI+ AR GAD +LLI A L + + LG TALVEVH
Sbjct: 115 VSIPVLRKDFVVQPYQIHEARAHGADXLLLIVAALEQSVLVSXLDRTESLGXTALVEVHT 174
Query: 298 EREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT 357
E+E DR T +VD ++ G +IR + ESG+
Sbjct: 175 EQEADR-ALKAGAKVIGVNARDLXTLDVDRDCFARIAPGLPSSVIR------IAESGVRG 227
Query: 358 PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392
D+ AG AVLVGE +V DP + L
Sbjct: 228 TADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLV 262
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 13/223 (5%)
Query: 173 RTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA 232
R GL ++IAEVK+ SPS G++RE DPVE A +Y +GGA +S+LT+ F GS +L+
Sbjct: 43 RPGL-SVIAEVKRQSPSEGLIRE-VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKR 100
Query: 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292
VR A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL AL
Sbjct: 101 VREA-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEE-ARRLGLEAL 158
Query: 293 VEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNI--IVV 350
VEVH ERE++ + T ++ +L G + R++ ++V
Sbjct: 159 VEVHTERELE-IALEAGAEVLGINNRDLATLHINLETAPRL-----GRLARKRGFGGVLV 212
Query: 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393
ESG +++ + E AVL+G S+++ D + L G
Sbjct: 213 AESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V ESG+ ++I +++ GV A
Sbjct: 176 FIGINSRDLETLEINKENQRKLIS------MIPSNVVKVAESGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
L+G S+++
Sbjct: 230 FLIGSSLMRN 239
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 129/250 (51%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 7 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSILT+EKYF GS+E L + S+ V P+L K+FIV
Sbjct: 59 -LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIASS-VSIPILMKDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D +
Sbjct: 116 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V ESG+ ++I +++ GV A
Sbjct: 175 FIGINSRDLETLEINKENQRKLIS------MIPSNVVKVAESGISERNEIEELRKLGVNA 228
Query: 372 VLVGESIVKQ 381
L+G S+++
Sbjct: 229 FLIGSSLMRN 238
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus Solfataricus
Length = 222
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 167 LMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS 226
++ N+R + A+IAE K+ SPS L + DP+E ++ E+ A LSILT+EKYF GS
Sbjct: 11 ILEFNKR-NITAIIAEYKRKSPSG--LDVERDPIEYSKFMERY-AVGLSILTEEKYFNGS 66
Query: 227 FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286
+E L + S+ V P+L K+FIV QI A GAD VLLI +L + ++ + + +
Sbjct: 67 YETLRKIASS-VSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARS 125
Query: 287 LGLTALVEVHDEREMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKN 346
G+ L+E++DE ++D + T E++ N +KL+ + N
Sbjct: 126 YGMEPLIEINDENDLD-IALRIGARFIGINSRDLETLEINKENQRKLIS------MIPSN 178
Query: 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381
++ V ESG+ ++I +++ GV A L+G S+++
Sbjct: 179 VVKVAESGISERNEIEELRKLGVNAFLIGSSLMRN 213
>pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-glycerol Phosphate Synthase
(tm0140) From Thermotoga Maritima At 3.0 A Resolution
Length = 242
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 34 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 92
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 93 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 151
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 358
++++V TFE+ + +LL + + +VV ESG+ P
Sbjct: 152 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLP------LVPDDTVVVAESGIKDP 205
Query: 359 DDIAYVQEAGVKAVLVGESIVKQDDP 384
++ ++ V AVLVG SI+K ++P
Sbjct: 206 RELKDLR-GKVNAVLVGTSIMKAENP 230
>pdb|1I4N|A Chain A, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
pdb|1I4N|B Chain B, Crystal Structure Of Indoleglycerol Phosphate Synthase
From Thermotoga Maritima
Length = 251
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 9/208 (4%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV 238
+IAE KKASPS G + D + R Y++ A +SILT++ YFKG + A R+
Sbjct: 43 IIAEFKKASPSAGDINADASLEDFIRMYDELADA-ISILTEKHYFKGDPAFVRAARNLTC 101
Query: 239 KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDE 298
+ P+L K+F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH
Sbjct: 102 R-PILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR 160
Query: 299 REMDRVXXXXXXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP 358
++++V TFE+ + +LL + + +VV ESG+ P
Sbjct: 161 EDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLP------LVPDDTVVVAESGIKDP 214
Query: 359 DDIAYVQEAGVKAVLVGESIVKQDDPGK 386
++ ++ V AVLVG SI+K ++P +
Sbjct: 215 RELKDLR-GKVNAVLVGTSIMKAENPRR 241
>pdb|3UZ5|A Chain A, Designed Protein Ke59 R13 311H
pdb|3UZ5|B Chain B, Designed Protein Ke59 R13 311H
pdb|3UZJ|A Chain A, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
pdb|3UZJ|B Chain B, Designed Protein Ke59 R13 311H WITH BENZOTRIAZOLE
Length = 252
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV Q QRRP P ++ N+R + A++A K+ SPS
Sbjct: 8 WLEDV--VQRSQRRP----SVRASRQRPIISLKERILEFNKR-NITAIMAVYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + IV
Sbjct: 60 -LDVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSVPILMWDIIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + LG+ + +HDE ++D +
Sbjct: 117 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSLGMEPAIVIHDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++N N +KL+ + N++ V SG+ ++I + + GV A
Sbjct: 176 FIIITSHDLETLEINNENQRKLIS------MIPSNVVKVVASGISERNEIEELYKLGVNA 229
Query: 372 VLVGESIVKQ 381
+G S+++
Sbjct: 230 FEIGTSLMRN 239
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAEYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L ILT+EKYF GS+E L + S+ V P+ + IV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLKILTEEKYFNGSYETLRKIASS-VSIPIAMSDAIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V+LI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVVLIVKILTERELESLLEYARSYGMEPLIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V +G+ ++I +++ GV A
Sbjct: 176 FIGIESRDWETLEINKENQRKLIS------MIPSNVVKVAIAGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
L+G S+++
Sbjct: 230 FLIGSSLMRN 239
>pdb|4IJB|A Chain A, Crystal Structure Of Engineered Protein, Northeast
Structural Genomics Consortium Target Or288
Length = 256
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 124/260 (47%), Gaps = 18/260 (6%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIALYXRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI+T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFXERY-AVGLSIVTEEKYFNGSYETLRKIASS-VSIPILXNDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V L +L + ++ + + + G L+E++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALKVKILTERELESLLEYARSYGXEPLIEINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ N++ V G+ ++I +++ GV A
Sbjct: 176 FIGIWSQDNETLEINKENQRKLISX------IPSNVVKVAGGGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQDDPGKGITGL 391
L+GES+ + + K + L
Sbjct: 230 FLIGESLXRNPEKIKELIEL 249
>pdb|4A29|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.0
Length = 258
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA ++ SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAVYERKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V + G+ ++I +++ GV A
Sbjct: 176 FIGIMSRDFETGEINKENQRKLIS------MIPSNVVKVAKLGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
L+ S+++
Sbjct: 230 FLISSSLMRN 239
>pdb|4A2S|A Chain A, Structure Of The Engineered Retro-aldolase Ra95.5
Length = 258
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIAYYSRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYETLRKIASS-VSIPILMSDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V + G+ ++I +++ GV A
Sbjct: 176 FIGIFSMNFETGEINKENQRKLIS------MIPSNVVKVAKLGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
L+ S+++
Sbjct: 230 FLISSSLMRN 239
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IAE K+ PS
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKRN-ITAIIAEYKRKDPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLFISTEEKYFNGSYETLRKIASS-VSIPILMYDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V + G+ ++I +++ GV A
Sbjct: 176 FIGIAARDWETGEINKENQRKLIS------MIPSNVVKVAKEGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
L+G S+++
Sbjct: 230 FLIGSSLMRN 239
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 130/262 (49%), Gaps = 24/262 (9%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP S+ +A R I ++ N+R A+IA K+ SP
Sbjct: 8 WLEDV--VQLSLRRP-SL------HASRQRPIISLRERILEFNKRNN-TAIIAVYKRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+G L+ILT+EKYF GS+E+L + S+ V P+L + I
Sbjct: 58 SG--LNVERDPIEYAKFMERG-VVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDII 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
V QI A GAD V LI +L + +++ + + + G+ + ++DE ++D +
Sbjct: 114 VKESQIDDAYNLGADTVGLIVKILTERELKSLLEYARSYGMEPAIVINDENDLD-IALRI 172
Query: 309 XXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368
T E++ N +KL+ ++++ V SG+ ++I +++ G
Sbjct: 173 GARFIIISSHDLETLEINKENQRKLISMVPSDVVK------VVASGISERNEIEELRKLG 226
Query: 369 VKAVLVGESIVKQDDPGKGITG 390
V A +G S+++ + K G
Sbjct: 227 VNAFEIGSSLMRNPEKIKEFIG 248
>pdb|4A2R|A Chain A, Structure Of The Engineered Retro-Aldolase Ra95.5-5
Length = 258
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 24/253 (9%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGA---LMAANQRTGLPALIAEVKKASP 188
W +DV QL RRP +A R I ++ N ++ + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRPSV-------HASRQRPIISLNERILEFN-KSNITAIIAYYTRKSP 57
Query: 189 SRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI 248
S L + DP+E A+ E+ A LSI T+EKYF GS+E L + S+ V P+L +FI
Sbjct: 58 SG--LDVERDPIEYAKFMERY-AVGLSIKTEEKYFNGSYEMLRKIASS-VSIPILMNDFI 113
Query: 249 VDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXX 308
V QI A GAD VLLI +L + ++ + + + G+ L+ ++DE ++D +
Sbjct: 114 VKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLD-IALRI 172
Query: 309 XXXXXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368
T E++ N +KL+ + N++ V + G+ ++I +++ G
Sbjct: 173 GARFISIFSMNFETGEINKENQRKLIS------MIPSNVVKVAKLGISERNEIEELRKLG 226
Query: 369 VKAVLVGESIVKQ 381
V A L+ S+++
Sbjct: 227 VNAFLISSSLMRN 239
>pdb|3UY7|A Chain A, Designed Protein Ke59 R1 710H WITH G130S MUTATION
pdb|3UY7|B Chain B, Designed Protein Ke59 R1 710H WITH G130S MUTATION
Length = 252
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
+V QL RRP L+ + P ++ N+R + A+IA K+ SPS L +
Sbjct: 11 DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV QI
Sbjct: 64 RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 122 AYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARIIIIS 180
Query: 317 XXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376
T E++ N +KL+ + N++ V SG+ ++I +++ GV A +G
Sbjct: 181 SRDLETLEINKENQRKLIS------MIPSNVVKVAASGISERNEIEELRKLGVNAFEIGS 234
Query: 377 SIVKQ 381
S+++
Sbjct: 235 SLMRN 239
>pdb|3UY8|A Chain A, Designed Protein Ke59 R5_115F
pdb|3UY8|B Chain B, Designed Protein Ke59 R5_115F
Length = 247
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP L+ + P ++ N+R A+IA K+ SPS
Sbjct: 7 WLEDV--VQLSLRRP--SLRAS--RQRPIISLKERILEFNKRNN-TAIIAVYKRKSPSG- 58
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A L+ILT+EKYF GS+E+L + S+ V P+L +FIV
Sbjct: 59 -LDVERDPIEYAKFMERY-AVGLAILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKE 115
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 116 SQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 174
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V SG+ ++I + + GV A
Sbjct: 175 FIIISSHDLETLEINKENQRKLIS------MIPSNVVKVVASGISERNEIEELYKLGVNA 228
Query: 372 VLVGESIVKQ 381
+G S+++
Sbjct: 229 FEIGSSLMRN 238
>pdb|3UXA|A Chain A, Designed Protein Ke59 R1 710H
pdb|3UXA|B Chain B, Designed Protein Ke59 R1 710H
pdb|3UXD|A Chain A, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
pdb|3UXD|B Chain B, Designed Protein Ke59 R1 710H WITH DICHLOROBENZOTRIAZOLE
(DBT)
Length = 252
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 137 EVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED 196
+V QL RRP L+ + P ++ N+R + A+IA K+ SPS L +
Sbjct: 11 DVVQLSLRRP--SLRAS--RQRPIISLRERILEFNKR-NITAIIAVYKRKSPSG--LDVE 63
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DP+E A+ E+ A L ILT+EKYF GS+E+L + S+ V P+L +FIV QI
Sbjct: 64 RDPIEYAKFMERY-AVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWDFIVKESQIDD 121
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXXXXXXX 316
A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 122 AYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVINDEEDLD-IALRIGARIIIIS 180
Query: 317 XXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376
T E++ N +KL+ + N++ V SG+ ++I +++ GV A +G
Sbjct: 181 SRDLETLEINKENQRKLIS------MIPSNVVKVAASGISERNEIEELRKLGVNAFEIGS 234
Query: 377 SIVKQ 381
S+++
Sbjct: 235 SLMRN 239
>pdb|3NYZ|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NYZ|B Chain B, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
pdb|3NZ1|A Chain A, Crystal Structure Of Kemp Elimination Catalyst 1a53-2
Complexed With Transition State Analog 5-Nitro
Benzotriazole
Length = 261
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA K+ SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKRN-ITAIIAAYKRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A L+I T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLAIATEEKYFNGSYETLRKIASS-VSIPILMWDFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ + ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPAIVINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V G+ ++I +++ GV A
Sbjct: 176 FIEIASRDLETLEINKENQRKLIS------MIPSNVVKVAWQGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
+G S+++
Sbjct: 230 FGIGSSLMRN 239
>pdb|3HOJ|A Chain A, Crystal Structure Of A Novel Engineered Retroaldolase:
Ra-22
Length = 248
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W KDV QL RRP P ++ N+R + A+IA + SPS
Sbjct: 8 WLKDV--VQLSLRRP----SFRASRQRPIISLNERILEFNKR-NITAIIAGYDRKSPSG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E ++ E+ A LSI T+EKYF GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYSKFMERY-AVGLSITTEEKYFNGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ L++++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V G+ ++I +++ GV A
Sbjct: 176 FIGIVSADWETLEINKENQRKLIS------MIPSNVVKVAAFGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
+ S+++
Sbjct: 230 FSIHSSLMRN 239
>pdb|3O6Y|X Chain X, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
pdb|3UD6|A Chain A, Structural Analyses Of Covalent Enzyme-Substrate Analogue
Complexes Reveal Strengths And Limitations Of De Novo
Enzyme Design
Length = 258
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 119/250 (47%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ +++++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIKINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V +G+ ++I +++ GV A
Sbjct: 176 FIGICSRDWETLEINKENQRKLIS------MIPSNVVKVASTGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
+ S+++
Sbjct: 230 FSIISSLMRN 239
>pdb|3NXF|A Chain A, Robust Computational Design, Optimization, And Structural
Characterization Of Retroaldol Enzymes
Length = 258
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 18/250 (7%)
Query: 132 WHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRG 191
W +DV QL RRP P ++ N+R + A+IA + SP
Sbjct: 8 WLEDV--VQLSLRRP----SVRASRQRPIISLNERILEFNKR-NITAIIATYMRKSPWG- 59
Query: 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA 251
L + DP+E A+ E+ A LSI T+EKY GS+E L + S+ V P+L +FIV
Sbjct: 60 -LDVERDPIEYAKFMERY-AVGLSICTEEKYANGSYETLRKIASS-VSIPILMADFIVKE 116
Query: 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVXXXXXXX 311
QI A GAD V LI +L + ++ + + + G+ ++ ++DE ++D +
Sbjct: 117 SQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDENDLD-IALRIGAR 175
Query: 312 XXXXXXXXXXTFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371
T E++ N +KL+ + N++ V +G+ ++I +++ GV A
Sbjct: 176 FIGICSRDWETLEINKENQRKLIS------MIPSNVVKVASTGISERNEIEELRKLGVNA 229
Query: 372 VLVGESIVKQ 381
+ S+++
Sbjct: 230 FSIISSLMRN 239
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP K
Sbjct: 171 IIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVK 216
>pdb|1XM3|A Chain A, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|B Chain B, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|C Chain C, Crystal Structure Of Northeast Structural Genomics Target
Sr156
pdb|1XM3|D Chain D, Crystal Structure Of Northeast Structural Genomics Target
Sr156
Length = 264
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP K
Sbjct: 173 IIEQAKVPVIVDAGIGSPKDAAYAXELGADGVLLNTAVSGADDPVK 218
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ +E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGSFENLEAV 233
++F PV + AR Y++ G + ++ DE Y +GS + A+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGSSQEHSAL 648
>pdb|2J04|A Chain A, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|C Chain C, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 588
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 86 NEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRR 145
NE Q IR+ P ++ R+ + G+ ++ + IVW++DV V L
Sbjct: 148 NEDGELQFFSIRKNSENTPEFYFES--SIRLSDAGS--KDWVTHIVWYEDVLVAALSNNS 203
Query: 146 PLSMLKNALDNAPPAR 161
SM +A + P +R
Sbjct: 204 VFSMTVSASSHQPVSR 219
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +GS
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGS 642
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
G+ TP D A + + G V VG I K D+P K
Sbjct: 217 GVATPADAALMMQLGADGVFVGSGIFKSDNPAK 249
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
G+ TP D A + + G V VG I K D+P K
Sbjct: 214 GVATPADAALMMQLGADGVFVGSGIFKSDNPAK 246
>pdb|2V1L|A Chain A, Structure Of The Conserved Hypothetical Protein Vc1805
From Pathogenicity Island Vpi-2 Of Vibrio Cholerae O1
Biovar Eltor Str. N16961 Shares Structural Homology With
The Human P32 Protein
Length = 148
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLE 231
F PVEIA S G C+ +TD Y F LE
Sbjct: 57 FHPVEIALSQSSDGQWCIEYITDFAYVGNHFPELE 91
>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1K0W|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1K0W|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 59 GSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQN 118
G+ + M DAE EWE G +I E QGI + P G +H GPF +
Sbjct: 124 GTIPCTRKMTDAEIN-GEYEWETGNVIVETFEKQGIDAAQMP--GVLVHSHGPFAWGKNA 180
Query: 119 EGNTPRNILEEIVWHKDVEVTQLKQRRP 146
E I+ E V + + QL + P
Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLP 208
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 550 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 609
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 610 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 642
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 134 KDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGIL 193
KD+E Q+ + + + A P F G L + + A+ E +KA+ R +
Sbjct: 549 KDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENRKANSVRNAV 608
Query: 194 REDFDPV-EIARSYEKGGAACLSILTDEKYFKGS 226
++F PV + AR Y++ G + ++ DE Y +G+
Sbjct: 609 TQEFGPVPDTARYYKQHGIRWV-VIGDENYGEGA 641
>pdb|2HTM|A Chain A, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|B Chain B, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|C Chain C, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
pdb|2HTM|D Chain D, Crystal Structure Of Ttha0676 From Thermus Thermophilus
Hb8
Length = 268
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 349 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
VV ++GL P A V E G+ AVLV +I + DP
Sbjct: 181 VVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDP 216
>pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|D Chain D, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
Length = 297
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 353 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
G+ TP D A + G+ V VG I K DP K
Sbjct: 216 GGIATPADAALMMHLGMDGVFVGSGIFKSGDPRK 249
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 366
E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 29 EMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 366
E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 29 EMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 366
E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 29 EMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 366
E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 29 EMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|B Chain B, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|C Chain C, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|D Chain D, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|E Chain E, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|F Chain F, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|G Chain G, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|H Chain H, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|I Chain I, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|J Chain J, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|K Chain K, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|L Chain L, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|M Chain M, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|N Chain N, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
pdb|1A9C|O Chain O, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp
Length = 221
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA--YVQE 366
E+DN K L+ G EI++ N+ + +S + TP IA YV E
Sbjct: 29 EMDNETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDE 73
>pdb|1WV2|A Chain A, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
pdb|1WV2|B Chain B, Crystal Structure Of Thiamine Biosynthesis Protein From
Pseudomonas Aeruginosa
Length = 265
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 182 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 225
>pdb|3LU0|C Chain C, Molecular Model Of Escherichia Coli Core Rna Polymerase
Length = 1342
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 351 GESGLFTPDDIAYVQEAGVKAVLVGESIV---KQDDPGKGITG 390
GES LF+ D + Y+ + + V VG S++ + DD + + G
Sbjct: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682
>pdb|3IYD|C Chain C, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|4IGC|C Chain C, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|H Chain H, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 1342
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 351 GESGLFTPDDIAYVQEAGVKAVLVGESIV---KQDDPGKGITG 390
GES LF+ D + Y+ + + V VG S++ + DD + + G
Sbjct: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 353 SGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
G+ TP D A + G V VG I K DP K
Sbjct: 234 GGVATPADAALMMMLGADGVFVGSGIFKSKDPRK 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,176,157
Number of Sequences: 62578
Number of extensions: 441097
Number of successful extensions: 1096
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 67
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)