Query 015899
Match_columns 398
No_of_seqs 295 out of 1593
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02460 indole-3-glycerol-pho 100.0 8.4E-99 2E-103 746.9 32.8 337 56-396 2-338 (338)
2 KOG4201 Anthranilate synthase 100.0 8.5E-79 1.9E-83 567.3 20.7 279 105-398 2-289 (289)
3 COG0134 TrpC Indole-3-glycerol 100.0 1.1E-77 2.3E-82 576.0 26.1 253 127-392 1-253 (254)
4 PF00218 IGPS: Indole-3-glycer 100.0 1.4E-75 2.9E-80 564.0 23.9 254 127-391 1-254 (254)
5 PRK13957 indole-3-glycerol-pho 100.0 5.2E-70 1.1E-74 522.8 30.2 245 125-392 3-247 (247)
6 PRK13802 bifunctional indole-3 100.0 6.3E-69 1.4E-73 575.8 31.3 259 124-394 1-259 (695)
7 PRK09427 bifunctional indole-3 100.0 5.9E-69 1.3E-73 554.0 29.1 254 124-394 4-257 (454)
8 PRK00278 trpC indole-3-glycero 100.0 2E-63 4.3E-68 480.5 32.4 258 123-393 1-258 (260)
9 cd00331 IGPS Indole-3-glycerol 100.0 2E-43 4.3E-48 329.8 26.3 209 175-391 9-217 (217)
10 PRK01130 N-acetylmannosamine-6 99.9 9.3E-25 2E-29 204.9 20.1 196 178-393 6-220 (221)
11 PF04131 NanE: Putative N-acet 99.9 2.4E-24 5.1E-29 199.4 16.1 175 199-392 1-190 (192)
12 cd04729 NanE N-acetylmannosami 99.9 7.5E-24 1.6E-28 198.7 19.1 190 178-387 10-218 (219)
13 COG3010 NanE Putative N-acetyl 99.9 3.1E-23 6.6E-28 193.6 18.3 195 178-393 16-227 (229)
14 TIGR00007 phosphoribosylformim 99.8 5.2E-19 1.1E-23 166.4 18.6 176 197-384 28-227 (230)
15 cd04727 pdxS PdxS is a subunit 99.8 1.2E-18 2.5E-23 170.0 18.4 180 200-393 18-243 (283)
16 PRK00748 1-(5-phosphoribosyl)- 99.8 2.8E-18 6E-23 161.3 17.4 179 196-383 29-228 (233)
17 TIGR00343 pyridoxal 5'-phospha 99.8 4E-18 8.6E-23 166.4 18.5 180 200-393 20-246 (287)
18 PRK04302 triosephosphate isome 99.8 2.3E-17 5E-22 155.9 17.9 166 223-393 41-220 (223)
19 cd00958 DhnA Class I fructose- 99.8 1.7E-17 3.7E-22 156.8 15.2 182 195-393 19-232 (235)
20 PRK04180 pyridoxal biosynthesi 99.7 6.2E-17 1.3E-21 158.5 14.1 180 200-393 27-252 (293)
21 cd04732 HisA HisA. Phosphorib 99.6 1.2E-14 2.6E-19 136.6 18.8 177 196-384 28-228 (234)
22 PRK13125 trpA tryptophan synth 99.6 1E-13 2.2E-18 132.9 17.5 146 227-380 63-219 (244)
23 COG0106 HisA Phosphoribosylfor 99.6 1.4E-13 3.1E-18 132.1 17.4 183 196-388 30-235 (241)
24 cd04726 KGPDC_HPS 3-Keto-L-gul 99.5 3.3E-13 7E-18 124.0 18.2 181 198-391 14-202 (202)
25 PRK13585 1-(5-phosphoribosyl)- 99.5 3.2E-13 7E-18 128.0 18.3 184 197-390 32-237 (241)
26 TIGR03128 RuMP_HxlA 3-hexulose 99.5 6.3E-13 1.4E-17 123.0 18.4 183 198-393 13-204 (206)
27 cd04723 HisA_HisF Phosphoribos 99.5 1.8E-12 4E-17 123.6 20.1 183 193-386 31-229 (233)
28 PRK14024 phosphoribosyl isomer 99.5 2E-12 4.3E-17 123.9 20.3 183 198-391 33-238 (241)
29 PRK02083 imidazole glycerol ph 99.5 1.3E-12 2.7E-17 125.5 19.0 192 195-396 28-249 (253)
30 PRK13587 1-(5-phosphoribosyl)- 99.5 1.4E-12 3E-17 124.9 17.8 174 197-380 31-226 (234)
31 PRK14114 1-(5-phosphoribosyl)- 99.5 2.5E-12 5.5E-17 123.8 17.7 182 196-388 29-236 (241)
32 cd04731 HisF The cyclase subun 99.4 7.6E-12 1.7E-16 119.0 19.4 187 196-392 26-240 (243)
33 PLN02446 (5-phosphoribosyl)-5- 99.4 8.8E-12 1.9E-16 121.5 19.6 176 197-384 43-249 (262)
34 TIGR03572 WbuZ glycosyl amidat 99.4 1.3E-11 2.9E-16 116.6 19.2 173 196-378 29-230 (232)
35 PRK13586 1-(5-phosphoribosyl)- 99.4 7.2E-12 1.6E-16 120.0 17.3 175 197-381 30-224 (232)
36 PF00977 His_biosynth: Histidi 99.4 9.5E-13 2.1E-17 125.3 11.1 178 194-381 26-226 (229)
37 TIGR00735 hisF imidazoleglycer 99.4 1.3E-11 2.7E-16 119.0 18.8 192 196-397 29-252 (254)
38 PRK00043 thiE thiamine-phospha 99.4 1.2E-11 2.7E-16 114.0 17.7 175 197-393 21-206 (212)
39 PRK01033 imidazole glycerol ph 99.4 1.4E-11 3E-16 119.3 18.4 175 197-381 30-232 (258)
40 COG0214 SNZ1 Pyridoxine biosyn 99.4 1E-12 2.2E-17 125.5 9.3 186 199-392 29-254 (296)
41 cd00452 KDPG_aldolase KDPG and 99.4 2.1E-11 4.5E-16 112.6 17.8 162 196-380 15-176 (190)
42 cd04722 TIM_phosphate_binding 99.4 1.4E-11 3E-16 109.1 15.8 174 197-376 12-200 (200)
43 KOG1606 Stationary phase-induc 99.4 1.2E-12 2.7E-17 123.5 9.3 186 200-393 31-256 (296)
44 PRK09140 2-dehydro-3-deoxy-6-p 99.4 2.5E-11 5.4E-16 114.4 18.1 186 178-393 11-201 (206)
45 TIGR00734 hisAF_rel hisA/hisF 99.4 1.8E-11 3.9E-16 116.3 16.7 174 196-381 35-219 (221)
46 TIGR01919 hisA-trpF 1-(5-phosp 99.3 6.7E-11 1.5E-15 114.0 18.9 178 196-384 30-234 (243)
47 TIGR00693 thiE thiamine-phosph 99.3 4E-11 8.6E-16 110.0 16.0 171 198-391 14-196 (196)
48 cd00564 TMP_TenI Thiamine mono 99.3 1.1E-10 2.4E-15 105.1 18.6 172 197-392 12-195 (196)
49 PRK04128 1-(5-phosphoribosyl)- 99.3 8.1E-11 1.8E-15 112.4 18.1 177 197-388 30-224 (228)
50 TIGR01163 rpe ribulose-phospha 99.3 5E-10 1.1E-14 103.2 20.0 183 198-391 12-209 (210)
51 cd04728 ThiG Thiazole synthase 99.2 2.3E-10 5E-15 110.4 16.1 180 196-392 19-221 (248)
52 TIGR02129 hisA_euk phosphoribo 99.2 3.2E-10 6.8E-15 110.2 16.5 170 197-380 37-237 (253)
53 PLN02591 tryptophan synthase 99.2 1.5E-09 3.2E-14 105.5 19.5 145 226-380 66-223 (250)
54 PRK00208 thiG thiazole synthas 99.2 5.4E-10 1.2E-14 108.0 16.2 179 196-392 20-221 (250)
55 PRK05581 ribulose-phosphate 3- 99.2 1.6E-09 3.4E-14 100.9 18.5 184 197-393 16-216 (220)
56 PLN02334 ribulose-phosphate 3- 99.2 2.1E-09 4.5E-14 102.1 19.4 193 187-393 11-220 (229)
57 PRK07455 keto-hydroxyglutarate 99.2 2.1E-09 4.6E-14 99.8 18.8 171 178-381 13-186 (187)
58 COG0352 ThiE Thiamine monophos 99.2 4.4E-10 9.6E-15 106.6 14.5 172 200-393 24-204 (211)
59 PLN02617 imidazole glycerol ph 99.2 1.9E-09 4E-14 114.8 20.5 190 191-393 261-530 (538)
60 PRK02615 thiamine-phosphate py 99.1 5.5E-10 1.2E-14 113.0 13.0 171 198-393 158-340 (347)
61 cd00429 RPE Ribulose-5-phospha 99.1 8.7E-09 1.9E-13 94.7 19.1 187 197-391 12-210 (211)
62 PRK06552 keto-hydroxyglutarate 99.1 5.3E-09 1.1E-13 99.3 17.6 184 178-392 14-206 (213)
63 TIGR00262 trpA tryptophan synt 99.1 9.1E-09 2E-13 100.0 19.2 173 199-380 26-232 (256)
64 PRK07695 transcriptional regul 99.0 1.5E-08 3.2E-13 94.2 17.9 170 198-393 16-195 (201)
65 PRK06512 thiamine-phosphate py 99.0 1E-08 2.2E-13 97.8 16.4 168 198-393 27-210 (221)
66 PRK13111 trpA tryptophan synth 99.0 1.7E-08 3.6E-13 98.4 17.5 146 226-383 76-236 (258)
67 PRK07028 bifunctional hexulose 99.0 2.2E-08 4.8E-13 103.4 18.9 182 198-393 17-208 (430)
68 PRK03512 thiamine-phosphate py 99.0 5.2E-09 1.1E-13 99.0 12.7 168 201-393 23-204 (211)
69 CHL00200 trpA tryptophan synth 99.0 5.9E-08 1.3E-12 94.9 19.3 146 226-379 79-235 (263)
70 TIGR01949 AroFGH_arch predicte 99.0 4.9E-08 1.1E-12 94.4 18.2 176 194-393 33-245 (258)
71 cd04724 Tryptophan_synthase_al 98.9 2.8E-08 6.1E-13 95.6 15.8 174 198-382 15-222 (242)
72 cd04730 NPD_like 2-Nitropropan 98.9 3.2E-08 6.9E-13 93.1 15.8 168 200-384 16-194 (236)
73 PLN02274 inosine-5'-monophosph 98.9 5.6E-08 1.2E-12 102.9 19.0 186 192-383 177-388 (505)
74 PRK12290 thiE thiamine-phospha 98.9 7.6E-09 1.6E-13 107.2 12.0 176 200-393 220-410 (437)
75 PRK07226 fructose-bisphosphate 98.9 1.4E-07 3E-12 91.9 19.6 175 195-393 37-249 (267)
76 PTZ00170 D-ribulose-5-phosphat 98.9 1.7E-07 3.7E-12 89.6 19.4 195 187-393 10-219 (228)
77 PRK06843 inosine 5-monophospha 98.9 3.4E-08 7.3E-13 101.9 14.3 128 252-385 156-296 (404)
78 COG0269 SgbH 3-hexulose-6-phos 98.8 2.1E-07 4.6E-12 88.5 17.3 155 227-393 44-210 (217)
79 PRK13307 bifunctional formalde 98.8 1.7E-07 3.7E-12 96.4 17.9 185 198-393 186-376 (391)
80 cd02809 alpha_hydroxyacid_oxid 98.8 1.4E-07 3.1E-12 93.1 16.5 164 199-381 83-262 (299)
81 PRK07807 inosine 5-monophospha 98.8 1.3E-07 2.8E-12 99.6 17.1 181 193-382 161-366 (479)
82 PLN02898 HMP-P kinase/thiamin- 98.8 3.7E-08 8E-13 103.7 12.9 172 198-393 308-493 (502)
83 TIGR03151 enACPred_II putative 98.8 1E-07 2.2E-12 94.9 15.1 165 201-382 26-197 (307)
84 TIGR01303 IMP_DH_rel_1 IMP deh 98.8 3.8E-07 8.3E-12 96.0 18.8 181 193-382 159-364 (475)
85 PRK08883 ribulose-phosphate 3- 98.7 2.4E-06 5.1E-11 81.6 21.0 197 187-393 3-213 (220)
86 TIGR01302 IMP_dehydrog inosine 98.7 6.3E-07 1.4E-11 93.6 18.2 181 193-383 157-364 (450)
87 PRK11840 bifunctional sulfur c 98.7 6.7E-07 1.4E-11 89.8 17.3 198 177-391 74-294 (326)
88 PF02581 TMP-TENI: Thiamine mo 98.7 1.1E-07 2.4E-12 87.1 9.6 159 198-378 13-180 (180)
89 TIGR01304 IMP_DH_rel_2 IMP deh 98.7 3.9E-07 8.5E-12 93.2 14.4 146 197-383 142-292 (369)
90 COG0107 HisF Imidazoleglycerol 98.7 8.5E-07 1.9E-11 85.3 15.4 188 193-392 26-246 (256)
91 PRK05458 guanosine 5'-monophos 98.6 5.4E-07 1.2E-11 90.7 14.5 121 253-382 101-237 (326)
92 PRK05567 inosine 5'-monophosph 98.6 2.3E-06 5.1E-11 90.1 19.7 183 193-382 161-367 (486)
93 COG0159 TrpA Tryptophan syntha 98.6 1.5E-06 3.1E-11 85.3 16.4 145 226-381 81-239 (265)
94 cd00381 IMPDH IMPDH: The catal 98.6 1.5E-06 3.3E-11 87.2 16.4 124 253-382 98-233 (325)
95 PRK06806 fructose-bisphosphate 98.6 9.6E-06 2.1E-10 80.2 20.6 145 238-393 73-246 (281)
96 cd04739 DHOD_like Dihydroorota 98.6 8.5E-07 1.8E-11 88.9 13.4 161 177-384 100-276 (325)
97 PRK08005 epimerase; Validated 98.6 9.6E-06 2.1E-10 77.2 19.7 192 186-392 3-208 (210)
98 PRK07565 dihydroorotate dehydr 98.5 1.6E-06 3.5E-11 86.9 14.9 159 177-383 102-277 (334)
99 PRK09517 multifunctional thiam 98.5 1.9E-06 4.1E-11 95.3 16.2 174 198-393 20-212 (755)
100 TIGR01182 eda Entner-Doudoroff 98.5 4.9E-06 1.1E-10 78.8 16.4 176 178-383 9-184 (204)
101 PRK05718 keto-hydroxyglutarate 98.5 7.6E-06 1.7E-10 77.9 17.6 175 178-382 16-190 (212)
102 PRK08649 inosine 5-monophospha 98.5 3.7E-06 7.9E-11 86.1 16.2 128 254-382 147-292 (368)
103 PTZ00314 inosine-5'-monophosph 98.5 5.1E-06 1.1E-10 88.0 17.7 180 193-382 174-380 (495)
104 PRK08999 hypothetical protein; 98.5 1E-06 2.2E-11 86.7 11.0 199 144-379 105-312 (312)
105 PRK08745 ribulose-phosphate 3- 98.4 4.8E-05 1E-09 73.0 20.9 197 187-393 7-217 (223)
106 cd04740 DHOD_1B_like Dihydroor 98.4 1.5E-05 3.3E-10 78.0 17.2 158 228-390 76-275 (296)
107 PRK04169 geranylgeranylglycery 98.4 8.1E-06 1.8E-10 78.8 14.9 168 199-393 21-229 (232)
108 PF01081 Aldolase: KDPG and KH 98.4 1.3E-05 2.7E-10 75.6 15.4 175 178-382 9-183 (196)
109 PF00290 Trp_syntA: Tryptophan 98.4 2.7E-06 5.7E-11 83.3 11.0 156 227-391 75-247 (259)
110 PRK07315 fructose-bisphosphate 98.4 6.1E-05 1.3E-09 74.9 20.5 181 200-393 32-248 (293)
111 cd02810 DHOD_DHPD_FMN Dihydroo 98.3 1.4E-05 3E-10 77.9 15.4 149 238-389 97-287 (289)
112 COG0036 Rpe Pentose-5-phosphat 98.3 0.0001 2.2E-09 70.7 20.3 197 185-393 5-215 (220)
113 TIGR01859 fruc_bis_ald_ fructo 98.3 8.5E-05 1.8E-09 73.5 19.9 143 238-392 72-245 (282)
114 PF03060 NMO: Nitronate monoox 98.3 1.1E-05 2.3E-10 81.1 12.8 123 251-383 103-227 (330)
115 TIGR01769 GGGP geranylgeranylg 98.3 1.2E-05 2.5E-10 76.4 12.0 162 198-375 12-205 (205)
116 PRK08091 ribulose-phosphate 3- 98.2 0.0002 4.3E-09 69.1 20.4 193 187-392 16-224 (228)
117 cd02812 PcrB_like PcrB_like pr 98.2 6.8E-06 1.5E-10 78.7 10.1 160 198-381 13-210 (219)
118 cd00945 Aldolase_Class_I Class 98.2 0.00012 2.7E-09 65.7 17.6 163 196-375 12-201 (201)
119 COG1830 FbaB DhnA-type fructos 98.2 9.9E-05 2.1E-09 72.4 17.9 177 187-392 37-254 (265)
120 PRK06852 aldolase; Validated 98.2 0.00011 2.3E-09 73.7 18.5 184 190-391 52-283 (304)
121 PRK09722 allulose-6-phosphate 98.2 0.00026 5.7E-09 68.2 20.2 197 186-393 5-217 (229)
122 PRK07259 dihydroorotate dehydr 98.2 7.9E-05 1.7E-09 73.4 16.7 147 238-389 90-277 (301)
123 TIGR01037 pyrD_sub1_fam dihydr 98.2 0.00012 2.6E-09 72.0 17.5 148 238-390 89-278 (300)
124 PRK06015 keto-hydroxyglutarate 98.2 0.00013 2.8E-09 69.1 16.8 164 197-382 16-179 (201)
125 PRK07114 keto-hydroxyglutarate 98.1 0.00016 3.5E-09 69.4 17.6 176 178-382 16-195 (222)
126 PRK05848 nicotinate-nucleotide 98.1 2.1E-05 4.5E-10 77.6 11.5 95 276-382 167-264 (273)
127 TIGR00737 nifR3_yhdG putative 98.1 8.1E-05 1.8E-09 74.2 15.7 146 239-393 62-240 (319)
128 TIGR01768 GGGP-family geranylg 98.1 2.5E-05 5.3E-10 75.1 11.3 160 198-381 15-214 (223)
129 cd02940 DHPD_FMN Dihydropyrimi 98.1 0.00021 4.5E-09 70.8 17.8 147 239-388 99-295 (299)
130 PRK13306 ulaD 3-keto-L-gulonat 98.1 0.00014 3E-09 69.2 15.9 182 198-393 17-209 (216)
131 cd02801 DUS_like_FMN Dihydrour 98.1 0.00013 2.9E-09 68.3 15.3 145 238-391 53-229 (231)
132 KOG3111 D-ribulose-5-phosphate 98.0 0.00046 9.9E-09 65.2 17.9 193 185-392 6-214 (224)
133 PRK14057 epimerase; Provisiona 98.0 0.00068 1.5E-08 66.4 19.7 194 187-393 23-239 (254)
134 CHL00162 thiG thiamin biosynth 98.0 0.00024 5.2E-09 69.5 16.4 177 196-391 26-234 (267)
135 cd02922 FCB2_FMN Flavocytochro 98.0 0.00014 3E-09 74.0 14.9 174 200-383 84-308 (344)
136 PRK06801 hypothetical protein; 98.0 0.00073 1.6E-08 67.2 19.6 135 238-381 73-239 (286)
137 PRK10415 tRNA-dihydrouridine s 98.0 0.00064 1.4E-08 68.2 18.8 145 240-393 65-242 (321)
138 TIGR00736 nifR3_rel_arch TIM-b 98.0 0.00014 3.1E-09 70.2 13.4 136 239-381 67-226 (231)
139 PRK08227 autoinducer 2 aldolas 98.0 0.00078 1.7E-08 66.3 18.7 124 253-393 99-244 (264)
140 cd04737 LOX_like_FMN L-Lactate 98.0 0.00023 5.1E-09 72.6 15.6 164 200-381 92-311 (351)
141 COG0800 Eda 2-keto-3-deoxy-6-p 98.0 0.00019 4.1E-09 68.5 13.8 164 197-382 25-188 (211)
142 cd02811 IDI-2_FMN Isopentenyl- 97.9 0.0001 2.2E-09 74.1 12.5 167 177-382 113-291 (326)
143 PLN02535 glycolate oxidase 97.9 4.6E-05 1E-09 78.0 10.2 103 226-381 211-313 (364)
144 cd04736 MDH_FMN Mandelate dehy 97.9 5.5E-05 1.2E-09 77.4 10.6 100 226-380 224-323 (361)
145 PF04481 DUF561: Protein of un 97.9 0.00049 1.1E-08 66.1 15.8 172 199-389 29-228 (242)
146 cd00405 PRAI Phosphoribosylant 97.9 0.0017 3.6E-08 60.5 19.3 169 201-392 10-200 (203)
147 PRK05437 isopentenyl pyrophosp 97.9 0.00014 3.1E-09 73.9 12.4 165 176-381 120-296 (352)
148 PRK07428 nicotinate-nucleotide 97.9 0.00012 2.7E-09 72.8 11.5 94 277-382 182-278 (288)
149 PRK11572 copper homeostasis pr 97.8 0.0014 2.9E-08 64.1 17.6 162 201-374 12-197 (248)
150 PF00834 Ribul_P_3_epim: Ribul 97.8 0.00019 4.1E-09 67.8 10.8 178 196-382 11-201 (201)
151 PRK05286 dihydroorotate dehydr 97.8 0.0005 1.1E-08 69.6 14.5 207 180-390 53-334 (344)
152 PRK13813 orotidine 5'-phosphat 97.8 0.0013 2.9E-08 61.6 16.0 153 225-393 42-210 (215)
153 cd02911 arch_FMN Archeal FMN-b 97.7 0.0026 5.6E-08 61.3 18.0 128 239-377 72-222 (233)
154 PF01884 PcrB: PcrB family; I 97.7 9.4E-05 2E-09 71.4 7.9 168 198-391 20-227 (230)
155 cd01568 QPRTase_NadC Quinolina 97.7 0.00026 5.6E-09 69.6 11.2 90 279-382 169-261 (269)
156 TIGR02708 L_lactate_ox L-lacta 97.7 0.00071 1.5E-08 69.5 14.7 166 198-381 98-318 (367)
157 TIGR00259 thylakoid_BtpA membr 97.7 0.0028 6.2E-08 62.2 18.3 176 201-393 32-250 (257)
158 TIGR00078 nadC nicotinate-nucl 97.7 0.00027 5.8E-09 69.5 11.1 89 277-381 164-255 (265)
159 PF01791 DeoC: DeoC/LacD famil 97.7 9.9E-05 2.1E-09 70.4 7.8 169 198-380 20-235 (236)
160 COG0149 TpiA Triosephosphate i 97.7 0.00053 1.2E-08 67.0 12.9 160 227-393 45-249 (251)
161 PRK09250 fructose-bisphosphate 97.7 0.0016 3.4E-08 66.4 16.7 181 195-386 89-329 (348)
162 PRK11815 tRNA-dihydrouridine s 97.7 0.0012 2.6E-08 66.6 15.8 147 238-393 63-251 (333)
163 cd01573 modD_like ModD; Quinol 97.7 0.00022 4.8E-09 70.2 10.3 80 288-380 183-262 (272)
164 PRK08072 nicotinate-nucleotide 97.7 0.00033 7.1E-09 69.3 11.4 87 277-378 174-263 (277)
165 cd04743 NPD_PKS 2-Nitropropane 97.7 0.00098 2.1E-08 67.3 14.9 172 198-383 15-210 (320)
166 cd04738 DHOD_2_like Dihydrooro 97.7 0.0027 5.8E-08 63.8 17.9 127 261-389 160-324 (327)
167 TIGR01305 GMP_reduct_1 guanosi 97.7 0.00076 1.7E-08 68.4 13.6 122 253-380 111-246 (343)
168 PRK08318 dihydropyrimidine deh 97.7 0.002 4.4E-08 66.6 17.1 145 239-384 99-292 (420)
169 PLN02495 oxidoreductase, actin 97.7 0.00091 2E-08 69.1 14.5 176 177-384 114-309 (385)
170 TIGR01334 modD putative molybd 97.7 0.0018 3.8E-08 64.3 15.9 90 276-377 174-265 (277)
171 PRK11197 lldD L-lactate dehydr 97.7 0.00022 4.7E-09 73.5 9.7 103 226-381 233-335 (381)
172 PRK07107 inosine 5-monophospha 97.7 0.0014 3E-08 69.9 16.0 182 193-380 176-386 (502)
173 PF03437 BtpA: BtpA family; I 97.7 0.0025 5.3E-08 62.5 16.5 179 200-393 32-250 (254)
174 TIGR02151 IPP_isom_2 isopenten 97.6 0.002 4.3E-08 65.1 16.2 176 199-381 72-289 (333)
175 cd01572 QPRTase Quinolinate ph 97.6 0.00048 1E-08 67.8 11.5 77 288-379 182-258 (268)
176 PF05690 ThiG: Thiazole biosyn 97.6 0.00019 4.2E-09 69.5 8.4 179 196-391 18-220 (247)
177 COG1411 Uncharacterized protei 97.6 0.00038 8.3E-09 66.0 9.4 183 192-389 31-224 (229)
178 COG0434 SgcQ Predicted TIM-bar 97.6 0.0054 1.2E-07 59.7 17.2 164 201-382 38-239 (263)
179 PLN02979 glycolate oxidase 97.6 0.00038 8.3E-09 71.3 9.9 102 226-380 211-312 (366)
180 cd04741 DHOD_1A_like Dihydroor 97.6 0.0033 7.2E-08 62.3 16.2 127 261-389 119-287 (294)
181 cd02803 OYE_like_FMN_family Ol 97.6 0.0017 3.8E-08 64.3 14.3 127 254-389 147-325 (327)
182 PF01070 FMN_dh: FMN-dependent 97.6 0.0004 8.6E-09 70.9 9.8 104 225-381 212-315 (356)
183 PRK08508 biotin synthase; Prov 97.5 0.015 3.2E-07 57.3 20.5 193 197-392 43-267 (279)
184 PF03932 CutC: CutC family; I 97.5 0.0025 5.4E-08 60.5 14.2 160 201-373 11-197 (201)
185 PRK08185 hypothetical protein; 97.5 0.015 3.3E-07 57.8 20.2 135 238-380 67-233 (283)
186 PRK02083 imidazole glycerol ph 97.5 0.00051 1.1E-08 66.1 9.5 93 293-393 27-121 (253)
187 PLN02493 probable peroxisomal 97.5 0.00055 1.2E-08 70.3 9.9 102 226-380 212-313 (367)
188 TIGR00742 yjbN tRNA dihydrouri 97.5 0.0053 1.1E-07 61.8 16.7 145 239-392 54-240 (318)
189 PRK07998 gatY putative fructos 97.5 0.012 2.5E-07 58.7 18.7 170 201-380 33-234 (283)
190 TIGR00735 hisF imidazoleglycer 97.5 0.00058 1.3E-08 66.0 9.3 91 295-393 29-121 (254)
191 PRK10550 tRNA-dihydrouridine s 97.5 0.0041 8.9E-08 62.4 15.4 144 239-390 62-239 (312)
192 PRK05742 nicotinate-nucleotide 97.5 0.0012 2.6E-08 65.4 11.5 79 288-381 189-267 (277)
193 TIGR00419 tim triosephosphate 97.5 0.0028 6.1E-08 60.2 13.5 149 227-381 41-204 (205)
194 PF09370 TIM-br_sig_trns: TIM- 97.4 0.0021 4.6E-08 63.3 12.5 180 200-381 25-252 (268)
195 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0044 9.4E-08 58.1 14.1 159 197-372 17-200 (203)
196 cd04731 HisF The cyclase subun 97.4 0.00077 1.7E-08 64.3 9.2 89 297-393 28-118 (243)
197 KOG2335 tRNA-dihydrouridine sy 97.4 0.0042 9.2E-08 63.3 14.5 139 238-384 72-242 (358)
198 COG2070 Dioxygenases related t 97.4 0.0018 4E-08 65.7 11.6 110 278-392 117-232 (336)
199 TIGR01302 IMP_dehydrog inosine 97.3 0.0029 6.4E-08 66.3 13.2 120 197-318 223-358 (450)
200 TIGR01036 pyrD_sub2 dihydrooro 97.3 0.0015 3.2E-08 66.2 10.6 159 196-389 150-332 (335)
201 COG0042 tRNA-dihydrouridine sy 97.3 0.012 2.5E-07 59.5 16.6 143 239-388 66-241 (323)
202 TIGR01306 GMP_reduct_2 guanosi 97.3 0.006 1.3E-07 61.7 14.5 121 253-382 98-234 (321)
203 COG2022 ThiG Uncharacterized e 97.3 0.014 3E-07 56.8 15.9 176 196-391 26-227 (262)
204 PRK00230 orotidine 5'-phosphat 97.3 0.025 5.5E-07 54.2 17.8 174 198-393 13-225 (230)
205 PTZ00314 inosine-5'-monophosph 97.3 0.0038 8.3E-08 66.4 13.3 119 198-318 241-375 (495)
206 PRK05567 inosine 5'-monophosph 97.2 0.0054 1.2E-07 64.9 14.2 123 192-316 222-360 (486)
207 TIGR01361 DAHP_synth_Bsub phos 97.2 0.015 3.2E-07 57.1 16.1 185 175-381 24-235 (260)
208 PF01729 QRPTase_C: Quinolinat 97.2 0.00074 1.6E-08 62.3 6.5 121 250-382 30-162 (169)
209 PF01680 SOR_SNZ: SOR/SNZ fami 97.2 0.00075 1.6E-08 63.1 6.4 119 178-316 16-145 (208)
210 PRK08385 nicotinate-nucleotide 97.2 0.0035 7.6E-08 62.2 11.5 91 279-379 171-263 (278)
211 PRK13585 1-(5-phosphoribosyl)- 97.2 0.0031 6.7E-08 59.9 10.6 93 190-283 141-238 (241)
212 PRK00748 1-(5-phosphoribosyl)- 97.2 0.0017 3.7E-08 61.2 8.8 90 295-392 29-120 (233)
213 PLN02716 nicotinate-nucleotide 97.2 0.0042 9.2E-08 62.5 11.7 94 277-378 186-293 (308)
214 KOG4175 Tryptophan synthase al 97.2 0.0065 1.4E-07 58.0 12.3 148 226-380 82-240 (268)
215 PRK00042 tpiA triosephosphate 97.2 0.0023 5E-08 62.5 9.6 129 256-390 81-247 (250)
216 PRK13305 sgbH 3-keto-L-gulonat 97.2 0.0035 7.5E-08 60.1 10.5 184 199-393 18-209 (218)
217 COG0167 PyrD Dihydroorotate de 97.1 0.009 1.9E-07 60.2 13.6 159 197-388 109-284 (310)
218 COG1646 Predicted phosphate-bi 97.1 0.0083 1.8E-07 58.2 12.6 134 249-383 29-228 (240)
219 cd03332 LMO_FMN L-Lactate 2-mo 97.1 0.0032 6.8E-08 65.1 10.3 171 198-380 152-342 (383)
220 PF00478 IMPDH: IMP dehydrogen 97.1 0.0095 2.1E-07 61.0 13.5 125 252-382 110-247 (352)
221 CHL00162 thiG thiamin biosynth 97.1 0.004 8.6E-08 61.1 10.2 87 196-284 145-237 (267)
222 TIGR01303 IMP_DH_rel_1 IMP deh 97.1 0.0087 1.9E-07 63.5 13.5 119 197-317 224-358 (475)
223 PF01207 Dus: Dihydrouridine s 97.0 0.0087 1.9E-07 59.8 12.4 141 239-387 53-225 (309)
224 TIGR03572 WbuZ glycosyl amidat 97.0 0.0039 8.5E-08 59.0 9.5 91 295-393 29-121 (232)
225 PRK08673 3-deoxy-7-phosphohept 97.0 0.036 7.7E-07 56.5 16.8 183 175-379 92-301 (335)
226 PRK05096 guanosine 5'-monophos 97.0 0.011 2.4E-07 60.2 13.0 117 260-382 121-249 (346)
227 COG3142 CutC Uncharacterized p 97.0 0.018 3.9E-07 55.8 13.7 155 201-371 12-196 (241)
228 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.0033 7.1E-08 60.8 8.7 75 196-274 147-226 (231)
229 PRK06559 nicotinate-nucleotide 97.0 0.0073 1.6E-07 60.3 11.3 87 277-378 183-272 (290)
230 PRK07709 fructose-bisphosphate 97.0 0.12 2.6E-06 51.6 19.8 133 239-380 77-238 (285)
231 PF01180 DHO_dh: Dihydroorotat 96.9 0.0047 1E-07 60.8 9.6 147 239-388 96-287 (295)
232 PRK06543 nicotinate-nucleotide 96.9 0.0092 2E-07 59.4 11.6 87 276-377 178-267 (281)
233 cd00947 TBP_aldolase_IIB Tagat 96.9 0.11 2.4E-06 51.6 19.1 134 238-380 68-231 (276)
234 PRK08649 inosine 5-monophospha 96.9 0.023 5E-07 58.5 14.7 126 196-324 140-293 (368)
235 PRK13398 3-deoxy-7-phosphohept 96.9 0.054 1.2E-06 53.4 16.6 172 194-380 38-236 (266)
236 PRK06978 nicotinate-nucleotide 96.9 0.011 2.5E-07 59.1 11.9 90 277-381 192-283 (294)
237 PRK06096 molybdenum transport 96.9 0.0064 1.4E-07 60.6 10.1 93 276-381 175-269 (284)
238 PRK12738 kbaY tagatose-bisphos 96.9 0.11 2.4E-06 51.9 18.8 173 200-380 32-237 (286)
239 cd00311 TIM Triosephosphate is 96.9 0.0032 7E-08 61.2 7.7 124 255-385 78-238 (242)
240 TIGR00007 phosphoribosylformim 96.9 0.0065 1.4E-07 57.3 9.6 78 196-274 144-224 (230)
241 cd04732 HisA HisA. Phosphorib 96.9 0.0068 1.5E-07 57.0 9.8 90 296-393 29-120 (234)
242 PRK00507 deoxyribose-phosphate 96.9 0.029 6.3E-07 53.9 14.0 162 198-377 23-208 (221)
243 cd04727 pdxS PdxS is a subunit 96.8 0.006 1.3E-07 60.6 9.4 111 201-321 123-274 (283)
244 PRK07896 nicotinate-nucleotide 96.8 0.012 2.6E-07 58.8 11.6 92 277-380 186-279 (289)
245 TIGR03569 NeuB_NnaB N-acetylne 96.8 0.016 3.5E-07 58.8 12.7 85 272-370 73-161 (329)
246 PRK06106 nicotinate-nucleotide 96.8 0.012 2.5E-07 58.7 11.3 87 277-378 180-269 (281)
247 TIGR00167 cbbA ketose-bisphosp 96.8 0.18 3.8E-06 50.5 19.7 132 239-379 77-240 (288)
248 PRK14567 triosephosphate isome 96.8 0.0065 1.4E-07 59.6 9.4 126 256-389 80-245 (253)
249 PRK09016 quinolinate phosphori 96.8 0.012 2.5E-07 59.1 11.3 86 277-377 195-282 (296)
250 PRK06843 inosine 5-monophospha 96.8 0.06 1.3E-06 56.2 17.0 144 161-319 129-288 (404)
251 PRK02506 dihydroorotate dehydr 96.8 0.037 8.1E-07 55.4 15.0 124 259-384 116-280 (310)
252 cd02922 FCB2_FMN Flavocytochro 96.8 0.041 8.8E-07 56.2 15.4 97 225-324 200-308 (344)
253 PTZ00333 triosephosphate isome 96.8 0.019 4.2E-07 56.3 12.5 127 256-389 84-249 (255)
254 PRK13523 NADPH dehydrogenase N 96.8 0.021 4.6E-07 57.9 13.1 157 200-396 145-326 (337)
255 PRK01033 imidazole glycerol ph 96.8 0.0066 1.4E-07 59.1 9.1 89 297-393 31-121 (258)
256 TIGR03586 PseI pseudaminic aci 96.8 0.017 3.6E-07 58.6 12.3 94 272-379 74-173 (327)
257 cd02932 OYE_YqiM_FMN Old yello 96.8 0.043 9.3E-07 55.2 15.0 151 200-389 157-334 (336)
258 TIGR01858 tag_bisphos_ald clas 96.8 0.16 3.4E-06 50.7 18.7 136 238-380 71-235 (282)
259 cd00381 IMPDH IMPDH: The catal 96.7 0.034 7.3E-07 56.2 14.0 117 198-320 94-230 (325)
260 TIGR01304 IMP_DH_rel_2 IMP deh 96.7 0.037 8E-07 57.1 14.5 97 272-378 116-219 (369)
261 cd04742 NPD_FabD 2-Nitropropan 96.7 0.008 1.7E-07 62.8 9.8 105 279-392 153-267 (418)
262 PLN02429 triosephosphate isome 96.7 0.024 5.2E-07 57.3 12.8 126 257-390 143-307 (315)
263 cd04728 ThiG Thiazole synthase 96.7 0.0084 1.8E-07 58.6 8.9 72 201-273 135-209 (248)
264 cd02809 alpha_hydroxyacid_oxid 96.7 0.056 1.2E-06 53.6 14.9 119 200-321 132-261 (299)
265 PRK09427 bifunctional indole-3 96.7 0.072 1.6E-06 56.4 16.4 172 176-373 159-334 (454)
266 PF04476 DUF556: Protein of un 96.7 0.064 1.4E-06 52.2 14.6 145 184-335 53-232 (235)
267 PRK14565 triosephosphate isome 96.6 0.014 3E-07 56.8 10.1 125 256-390 80-233 (237)
268 TIGR01037 pyrD_sub1_fam dihydr 96.6 0.011 2.3E-07 58.2 9.5 77 197-274 169-269 (300)
269 PRK00208 thiG thiazole synthas 96.6 0.01 2.2E-07 58.1 9.1 72 201-273 135-209 (250)
270 PLN02389 biotin synthase 96.6 0.2 4.4E-06 51.8 19.1 186 198-387 120-342 (379)
271 TIGR00126 deoC deoxyribose-pho 96.6 0.054 1.2E-06 51.7 13.7 159 198-372 19-201 (211)
272 PF03102 NeuB: NeuB family; I 96.6 0.026 5.7E-07 54.9 11.7 88 272-373 53-144 (241)
273 PRK14905 triosephosphate isome 96.6 0.01 2.3E-07 60.8 9.1 133 256-393 90-260 (355)
274 PRK13397 3-deoxy-7-phosphohept 96.5 0.18 3.9E-06 49.5 17.1 170 193-377 25-221 (250)
275 PRK09195 gatY tagatose-bisphos 96.5 0.35 7.6E-06 48.3 19.4 146 238-392 73-247 (284)
276 PRK07084 fructose-bisphosphate 96.5 0.29 6.4E-06 49.7 18.9 136 238-380 84-273 (321)
277 PRK12595 bifunctional 3-deoxy- 96.5 0.22 4.8E-06 51.2 18.3 173 191-378 126-325 (360)
278 PRK10415 tRNA-dihydrouridine s 96.5 0.02 4.3E-07 57.6 10.6 87 191-278 143-234 (321)
279 PRK04128 1-(5-phosphoribosyl)- 96.5 0.011 2.5E-07 56.6 8.4 74 297-379 31-106 (228)
280 PRK08610 fructose-bisphosphate 96.5 0.34 7.4E-06 48.5 19.0 171 200-379 32-237 (286)
281 PRK05458 guanosine 5'-monophos 96.5 0.0036 7.7E-08 63.5 5.1 92 180-272 131-234 (326)
282 PRK13399 fructose-1,6-bisphosp 96.5 0.28 6E-06 50.4 18.7 135 239-380 75-282 (347)
283 PRK12737 gatY tagatose-bisphos 96.4 0.36 7.7E-06 48.2 18.8 136 238-380 73-237 (284)
284 cd04735 OYE_like_4_FMN Old yel 96.4 0.016 3.5E-07 58.8 9.4 77 308-390 247-328 (353)
285 cd02911 arch_FMN Archeal FMN-b 96.4 0.011 2.5E-07 56.8 7.9 71 197-270 152-222 (233)
286 PLN02826 dihydroorotate dehydr 96.4 0.057 1.2E-06 56.4 13.5 119 260-381 215-376 (409)
287 PLN02274 inosine-5'-monophosph 96.4 0.0044 9.6E-08 66.1 5.4 94 179-273 279-385 (505)
288 PRK06256 biotin synthase; Vali 96.4 0.64 1.4E-05 46.5 20.6 191 198-392 95-317 (336)
289 PRK12857 fructose-1,6-bisphosp 96.4 0.41 8.8E-06 47.8 18.9 136 238-380 73-237 (284)
290 PLN02561 triosephosphate isome 96.4 0.04 8.6E-07 54.1 11.5 122 254-381 81-239 (253)
291 TIGR02814 pfaD_fam PfaD family 96.4 0.017 3.8E-07 60.8 9.5 104 280-392 159-272 (444)
292 TIGR01740 pyrF orotidine 5'-ph 96.3 0.079 1.7E-06 50.0 13.0 171 201-391 12-212 (213)
293 COG5564 Predicted TIM-barrel e 96.3 0.069 1.5E-06 51.8 12.5 179 202-383 33-260 (276)
294 PRK07259 dihydroorotate dehydr 96.3 0.022 4.8E-07 56.2 9.6 76 198-274 170-269 (301)
295 PRK01130 N-acetylmannosamine-6 96.3 0.034 7.4E-07 52.3 10.4 80 202-282 131-217 (221)
296 PF05690 ThiG: Thiazole biosyn 96.3 0.012 2.6E-07 57.3 7.2 87 197-285 132-224 (247)
297 PRK13396 3-deoxy-7-phosphohept 96.3 0.32 6.9E-06 50.0 17.9 181 177-379 102-310 (352)
298 PRK14024 phosphoribosyl isomer 96.3 0.027 5.8E-07 54.2 9.6 94 190-284 139-239 (241)
299 TIGR01521 FruBisAldo_II_B fruc 96.2 0.48 1E-05 48.7 18.7 135 239-380 73-280 (347)
300 cd02940 DHPD_FMN Dihydropyrimi 96.2 0.02 4.4E-07 56.7 8.7 75 198-273 181-286 (299)
301 cd04733 OYE_like_2_FMN Old yel 96.2 0.083 1.8E-06 53.2 13.2 127 256-390 157-337 (338)
302 PRK09196 fructose-1,6-bisphosp 96.2 0.54 1.2E-05 48.3 19.0 135 239-380 75-282 (347)
303 PRK07807 inosine 5-monophospha 96.2 0.0058 1.3E-07 64.9 5.0 94 179-272 258-363 (479)
304 PRK02227 hypothetical protein; 96.2 0.1 2.2E-06 50.9 13.1 144 185-336 54-232 (238)
305 cd04734 OYE_like_3_FMN Old yel 96.2 0.1 2.3E-06 52.9 13.6 45 346-390 285-330 (343)
306 TIGR00737 nifR3_yhdG putative 96.1 0.043 9.3E-07 54.8 10.6 80 197-277 147-231 (319)
307 TIGR01769 GGGP geranylgeranylg 96.1 0.03 6.5E-07 53.3 9.0 70 197-267 134-204 (205)
308 cd02808 GltS_FMN Glutamate syn 96.1 0.045 9.8E-07 56.6 11.0 109 272-381 196-320 (392)
309 cd04740 DHOD_1B_like Dihydroor 96.1 0.036 7.9E-07 54.4 9.8 76 198-274 167-266 (296)
310 COG0157 NadC Nicotinate-nucleo 96.1 0.036 7.8E-07 55.1 9.7 90 276-378 173-265 (280)
311 PF01645 Glu_synthase: Conserv 96.1 0.028 6.1E-07 57.9 9.3 104 271-379 184-307 (368)
312 PRK10550 tRNA-dihydrouridine s 96.1 0.027 5.8E-07 56.6 8.9 83 198-281 149-237 (312)
313 TIGR00433 bioB biotin syntheta 96.1 0.41 8.9E-06 46.6 16.9 185 198-386 66-284 (296)
314 cd00958 DhnA Class I fructose- 96.0 0.068 1.5E-06 50.7 11.0 102 177-284 123-230 (235)
315 TIGR02151 IPP_isom_2 isopenten 96.0 0.068 1.5E-06 54.1 11.5 158 199-363 130-326 (333)
316 PF01729 QRPTase_C: Quinolinat 96.0 0.023 5.1E-07 52.4 7.2 91 222-317 62-156 (169)
317 PRK13587 1-(5-phosphoribosyl)- 95.9 0.038 8.2E-07 53.2 8.9 90 296-393 31-123 (234)
318 COG2022 ThiG Uncharacterized e 95.9 0.048 1E-06 53.1 9.4 89 196-286 138-232 (262)
319 PRK12858 tagatose 1,6-diphosph 95.9 0.049 1.1E-06 55.6 9.9 127 249-384 107-285 (340)
320 PRK11840 bifunctional sulfur c 95.9 0.058 1.2E-06 54.8 10.3 72 201-273 209-283 (326)
321 PRK05835 fructose-bisphosphate 95.9 1 2.2E-05 45.7 18.9 134 239-380 74-260 (307)
322 PF04131 NanE: Putative N-acet 95.8 0.048 1E-06 51.6 8.7 81 200-283 102-189 (192)
323 TIGR01306 GMP_reduct_2 guanosi 95.8 0.015 3.2E-07 58.9 5.6 86 183-269 131-228 (321)
324 cd02801 DUS_like_FMN Dihydrour 95.8 0.043 9.2E-07 51.4 8.2 79 197-276 138-221 (231)
325 PRK15452 putative protease; Pr 95.7 0.26 5.5E-06 52.1 14.7 112 250-378 12-144 (443)
326 TIGR00343 pyridoxal 5'-phospha 95.7 0.11 2.3E-06 52.0 11.2 86 225-320 184-276 (287)
327 PRK04169 geranylgeranylglycery 95.7 0.052 1.1E-06 52.7 8.8 78 196-276 136-221 (232)
328 TIGR03151 enACPred_II putative 95.7 0.037 8E-07 55.4 7.9 93 160-272 98-194 (307)
329 cd02812 PcrB_like PcrB_like pr 95.7 0.081 1.8E-06 50.9 9.8 74 196-274 134-210 (219)
330 KOG0538 Glycolate oxidase [Ene 95.7 0.12 2.6E-06 52.3 11.2 171 195-379 131-311 (363)
331 PRK07565 dihydroorotate dehydr 95.6 0.057 1.2E-06 54.4 9.0 73 198-273 178-273 (334)
332 PRK15108 biotin synthase; Prov 95.5 1.7 3.7E-05 44.3 19.3 191 198-392 80-305 (345)
333 PRK07028 bifunctional hexulose 95.5 0.76 1.7E-05 47.8 17.1 173 198-380 119-329 (430)
334 cd04737 LOX_like_FMN L-Lactate 95.5 0.14 2.9E-06 52.6 11.3 93 226-321 209-310 (351)
335 PRK05286 dihydroorotate dehydr 95.5 0.034 7.4E-07 56.4 6.9 74 198-272 226-322 (344)
336 TIGR02708 L_lactate_ox L-lacta 95.4 0.13 2.9E-06 53.0 11.1 93 226-321 216-317 (367)
337 cd04729 NanE N-acetylmannosami 95.4 0.083 1.8E-06 49.8 8.9 77 198-276 132-214 (219)
338 PF01116 F_bP_aldolase: Fructo 95.4 0.5 1.1E-05 47.2 14.5 136 238-380 72-240 (287)
339 cd02933 OYE_like_FMN Old yello 95.3 0.37 8.1E-06 48.9 13.8 127 254-390 158-329 (338)
340 cd04739 DHOD_like Dihydroorota 95.2 0.13 2.9E-06 51.8 10.1 75 198-273 176-271 (325)
341 cd04738 DHOD_2_like Dihydrooro 95.2 0.039 8.5E-07 55.5 6.3 74 198-272 217-313 (327)
342 PRK08318 dihydropyrimidine deh 95.2 0.11 2.3E-06 53.9 9.7 76 197-273 180-287 (420)
343 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 0.057 1.2E-06 52.7 7.2 76 198-274 177-278 (289)
344 PRK05096 guanosine 5'-monophos 95.1 0.023 4.9E-07 58.0 4.3 93 179-271 141-245 (346)
345 COG0502 BioB Biotin synthase a 95.1 0.93 2E-05 46.4 15.8 192 196-391 86-311 (335)
346 TIGR01305 GMP_reduct_1 guanosi 95.1 0.26 5.6E-06 50.5 11.7 114 201-316 110-241 (343)
347 TIGR03128 RuMP_HxlA 3-hexulose 95.1 0.25 5.3E-06 45.7 10.7 87 198-285 114-203 (206)
348 COG2876 AroA 3-deoxy-D-arabino 94.8 0.072 1.6E-06 52.8 6.6 51 272-324 93-143 (286)
349 cd02930 DCR_FMN 2,4-dienoyl-Co 94.8 0.28 6E-06 49.8 11.0 45 346-390 276-321 (353)
350 cd03332 LMO_FMN L-Lactate 2-mo 94.8 0.27 5.8E-06 51.1 11.1 93 226-321 241-342 (383)
351 TIGR01334 modD putative molybd 94.8 0.59 1.3E-05 46.6 13.0 142 158-317 107-264 (277)
352 cd04726 KGPDC_HPS 3-Keto-L-gul 94.8 0.25 5.5E-06 45.3 9.9 83 196-281 113-199 (202)
353 PRK15492 triosephosphate isome 94.8 0.19 4E-06 49.6 9.4 126 257-388 90-254 (260)
354 COG0826 Collagenase and relate 94.8 0.85 1.8E-05 46.8 14.5 114 250-378 15-147 (347)
355 cd00408 DHDPS-like Dihydrodipi 94.7 4.4 9.5E-05 39.3 19.1 169 200-385 21-211 (281)
356 cd00946 FBP_aldolase_IIA Class 94.6 3.1 6.6E-05 42.9 18.1 141 238-380 86-280 (345)
357 PRK09197 fructose-bisphosphate 94.6 2.2 4.8E-05 44.0 17.0 149 230-380 84-284 (350)
358 cd00945 Aldolase_Class_I Class 94.6 1 2.3E-05 40.2 13.3 134 176-315 48-200 (201)
359 PF00478 IMPDH: IMP dehydrogen 94.6 0.67 1.4E-05 47.7 13.3 130 175-316 95-240 (352)
360 PRK07188 nicotinate phosphorib 94.6 0.28 6E-06 50.4 10.5 104 276-382 189-317 (352)
361 COG0042 tRNA-dihydrouridine sy 94.5 0.16 3.4E-06 51.4 8.5 84 195-279 150-239 (323)
362 cd02808 GltS_FMN Glutamate syn 94.5 0.11 2.3E-06 53.9 7.4 72 198-272 226-318 (392)
363 PRK00043 thiE thiamine-phospha 94.5 0.23 5.1E-06 45.7 8.9 79 198-282 113-202 (212)
364 cd02803 OYE_like_FMN_family Ol 94.4 0.16 3.4E-06 50.4 8.3 80 197-277 228-320 (327)
365 cd00331 IGPS Indole-3-glycerol 94.4 0.21 4.5E-06 46.9 8.6 77 203-279 134-212 (217)
366 PF00977 His_biosynth: Histidi 94.4 0.075 1.6E-06 50.8 5.7 95 292-394 25-121 (229)
367 cd04723 HisA_HisF Phosphoribos 94.4 0.26 5.5E-06 47.3 9.3 78 195-274 144-224 (233)
368 PF00121 TIM: Triosephosphate 94.4 0.05 1.1E-06 53.0 4.4 157 229-385 43-241 (244)
369 PRK08255 salicylyl-CoA 5-hydro 94.3 0.9 1.9E-05 50.9 14.7 46 346-391 687-734 (765)
370 cd00003 PNPsynthase Pyridoxine 94.3 5.3 0.00012 39.1 17.9 176 196-380 20-216 (234)
371 PRK04180 pyridoxal biosynthesi 94.2 0.21 4.6E-06 50.0 8.6 88 223-320 188-282 (293)
372 cd04725 OMP_decarboxylase_like 94.2 0.74 1.6E-05 43.6 12.0 145 225-390 37-215 (216)
373 TIGR02129 hisA_euk phosphoribo 94.2 0.18 3.8E-06 49.7 7.8 82 298-393 41-126 (253)
374 cd00564 TMP_TenI Thiamine mono 94.2 0.34 7.4E-06 43.4 9.1 81 198-281 104-191 (196)
375 TIGR02313 HpaI-NOT-DapA 2,4-di 94.2 6.6 0.00014 39.0 19.7 177 199-391 23-222 (294)
376 PRK14114 1-(5-phosphoribosyl)- 94.1 0.31 6.8E-06 47.3 9.4 119 162-284 110-240 (241)
377 COG0036 Rpe Pentose-5-phosphat 94.1 0.72 1.6E-05 44.6 11.6 114 196-316 70-197 (220)
378 cd00951 KDGDH 5-dehydro-4-deox 94.1 6.6 0.00014 38.8 19.4 171 199-384 23-213 (289)
379 TIGR01182 eda Entner-Doudoroff 94.1 0.9 1.9E-05 43.3 12.1 114 239-374 10-127 (204)
380 cd04736 MDH_FMN Mandelate dehy 94.0 0.17 3.7E-06 52.1 7.5 91 179-272 227-322 (361)
381 PRK07896 nicotinate-nucleotide 93.9 0.6 1.3E-05 46.8 11.1 137 159-317 124-275 (289)
382 PRK00278 trpC indole-3-glycero 93.8 0.32 7E-06 47.6 8.9 83 198-282 169-254 (260)
383 TIGR01949 AroFGH_arch predicte 93.8 0.33 7.2E-06 47.1 8.9 78 203-286 162-245 (258)
384 cd00452 KDPG_aldolase KDPG and 93.8 0.63 1.4E-05 43.0 10.4 103 201-317 67-172 (190)
385 PRK05265 pyridoxine 5'-phospha 93.8 7.3 0.00016 38.2 18.4 175 196-380 23-218 (239)
386 TIGR00742 yjbN tRNA dihydrouri 93.8 0.31 6.8E-06 49.2 8.9 80 197-277 141-232 (318)
387 cd04730 NPD_like 2-Nitropropan 93.8 0.23 5E-06 46.7 7.5 72 201-273 113-190 (236)
388 COG2089 SpsE Sialic acid synth 93.7 1.7 3.8E-05 44.4 13.9 157 175-373 13-178 (347)
389 COG1891 Uncharacterized protei 93.6 0.092 2E-06 49.5 4.4 130 184-316 53-208 (235)
390 COG0107 HisF Imidazoleglycerol 93.6 0.29 6.4E-06 47.8 7.9 91 294-393 28-121 (256)
391 KOG0538 Glycolate oxidase [Ene 93.4 0.46 1E-05 48.2 9.2 88 226-316 211-307 (363)
392 PRK07695 transcriptional regul 93.4 0.63 1.4E-05 43.2 9.6 71 201-273 106-182 (201)
393 COG0157 NadC Nicotinate-nucleo 93.3 0.38 8.2E-06 48.0 8.4 140 159-317 112-263 (280)
394 PRK13586 1-(5-phosphoribosyl)- 93.3 0.5 1.1E-05 45.6 9.1 90 296-393 30-120 (232)
395 TIGR01919 hisA-trpF 1-(5-phosp 93.3 0.5 1.1E-05 45.9 9.1 60 326-393 62-121 (243)
396 PLN02535 glycolate oxidase 93.2 0.14 3.1E-06 52.7 5.6 71 201-272 235-311 (364)
397 PF01207 Dus: Dihydrouridine s 93.2 0.13 2.8E-06 51.5 5.1 82 196-278 137-223 (309)
398 cd04747 OYE_like_5_FMN Old yel 93.2 1.6 3.4E-05 45.0 13.0 127 255-390 151-343 (361)
399 PRK13397 3-deoxy-7-phosphohept 93.2 1.2 2.5E-05 43.9 11.5 90 272-376 63-157 (250)
400 PF02310 B12-binding: B12 bind 93.2 1.2 2.5E-05 37.3 10.2 98 273-377 13-113 (121)
401 cd02811 IDI-2_FMN Isopentenyl- 93.2 0.51 1.1E-05 47.6 9.3 72 200-272 192-288 (326)
402 PF03060 NMO: Nitronate monoox 93.2 0.19 4.1E-06 50.7 6.2 94 159-272 124-223 (330)
403 PRK15447 putative protease; Pr 93.1 1.9 4.1E-05 43.1 13.1 108 253-379 19-142 (301)
404 cd06811 PLPDE_III_yhfX_like Ty 93.1 4.2 9.1E-05 41.9 16.0 166 200-381 67-262 (382)
405 PRK11815 tRNA-dihydrouridine s 93.1 0.43 9.3E-06 48.3 8.6 79 197-276 151-241 (333)
406 cd03315 MLE_like Muconate lact 93.1 1.4 3.1E-05 42.5 11.9 124 163-300 118-243 (265)
407 PRK05848 nicotinate-nucleotide 93.0 0.72 1.6E-05 45.8 10.0 139 159-317 106-258 (273)
408 cd04722 TIM_phosphate_binding 93.0 1.3 2.9E-05 38.8 10.8 131 177-316 58-199 (200)
409 TIGR00262 trpA tryptophan synt 93.0 0.47 1E-05 46.4 8.6 45 226-272 186-231 (256)
410 TIGR00559 pdxJ pyridoxine 5'-p 92.9 10 0.00022 37.3 18.1 176 196-380 20-217 (237)
411 cd03319 L-Ala-DL-Glu_epimerase 92.9 1.9 4.1E-05 42.7 12.8 101 198-303 192-294 (316)
412 TIGR01520 FruBisAldo_II_A fruc 92.9 6.8 0.00015 40.6 16.9 148 231-380 92-292 (357)
413 PRK08385 nicotinate-nucleotide 92.8 0.99 2.1E-05 45.0 10.6 142 159-317 106-260 (278)
414 KOG2550 IMP dehydrogenase/GMP 92.8 0.77 1.7E-05 48.3 10.1 126 250-381 252-389 (503)
415 PRK07107 inosine 5-monophospha 92.8 1.4 3E-05 47.4 12.4 116 198-316 242-381 (502)
416 cd08556 GDPD Glycerophosphodie 92.7 5.3 0.00012 35.5 14.3 136 162-316 50-188 (189)
417 TIGR01361 DAHP_synth_Bsub phos 92.6 0.56 1.2E-05 46.1 8.5 86 274-374 75-165 (260)
418 PRK09016 quinolinate phosphori 92.6 1 2.2E-05 45.4 10.3 133 159-317 133-281 (296)
419 PRK08883 ribulose-phosphate 3- 92.6 0.49 1.1E-05 45.4 7.8 90 193-285 113-212 (220)
420 TIGR03249 KdgD 5-dehydro-4-deo 92.6 12 0.00026 37.1 19.7 170 200-382 29-216 (296)
421 PRK13523 NADPH dehydrogenase N 92.5 0.31 6.8E-06 49.5 6.8 81 197-278 227-315 (337)
422 cd08562 GDPD_EcUgpQ_like Glyce 92.5 4.4 9.6E-05 37.7 14.1 123 176-316 100-227 (229)
423 PRK13125 trpA tryptophan synth 92.5 0.97 2.1E-05 43.6 9.8 58 227-286 173-235 (244)
424 PF03740 PdxJ: Pyridoxal phosp 92.4 3.1 6.7E-05 40.8 13.2 176 196-380 21-219 (239)
425 PRK07428 nicotinate-nucleotide 92.4 1.2 2.7E-05 44.5 10.7 137 159-316 120-271 (288)
426 PRK09140 2-dehydro-3-deoxy-6-p 92.3 1.3 2.9E-05 41.9 10.4 104 201-316 74-179 (206)
427 TIGR01036 pyrD_sub2 dihydrooro 92.3 0.24 5.2E-06 50.3 5.7 74 198-272 225-321 (335)
428 PRK12595 bifunctional 3-deoxy- 92.3 0.93 2E-05 46.7 10.0 90 272-376 166-260 (360)
429 PRK05198 2-dehydro-3-deoxyphos 92.3 11 0.00023 37.6 16.8 159 199-374 26-228 (264)
430 cd01571 NAPRTase_B Nicotinate 92.3 1.3 2.8E-05 44.5 10.7 90 289-382 185-280 (302)
431 PF01884 PcrB: PcrB family; I 92.3 0.2 4.3E-06 48.7 4.7 90 196-285 135-228 (230)
432 PLN02858 fructose-bisphosphate 92.2 8.5 0.00018 46.3 18.9 136 238-379 1168-1335(1378)
433 COG1304 idi Isopentenyl diphos 92.2 0.19 4.2E-06 51.7 4.8 102 271-381 204-308 (360)
434 PLN02826 dihydroorotate dehydr 92.1 0.62 1.3E-05 48.8 8.6 74 198-272 277-374 (409)
435 PRK03620 5-dehydro-4-deoxygluc 92.1 14 0.0003 36.9 19.9 175 199-388 30-224 (303)
436 PRK05437 isopentenyl pyrophosp 92.1 0.83 1.8E-05 46.7 9.3 74 200-273 200-295 (352)
437 cd02931 ER_like_FMN Enoate red 92.0 0.62 1.3E-05 48.0 8.4 45 346-390 305-350 (382)
438 COG2070 Dioxygenases related t 92.0 0.31 6.7E-06 49.7 6.0 94 159-272 115-217 (336)
439 TIGR01768 GGGP-family geranylg 92.0 0.32 6.9E-06 47.1 5.8 47 227-274 167-214 (223)
440 cd04735 OYE_like_4_FMN Old yel 92.0 0.16 3.6E-06 51.5 4.1 81 197-278 235-323 (353)
441 PF03437 BtpA: BtpA family; I 91.9 5 0.00011 39.6 14.1 104 176-285 140-253 (254)
442 PRK09856 fructoselysine 3-epim 91.9 10 0.00022 36.2 16.2 138 253-391 95-263 (275)
443 TIGR00693 thiE thiamine-phosph 91.9 4.1 8.9E-05 37.2 12.8 107 253-380 18-128 (196)
444 cd04734 OYE_like_3_FMN Old yel 91.8 0.7 1.5E-05 46.9 8.3 81 198-279 229-326 (343)
445 PRK12457 2-dehydro-3-deoxyphos 91.8 13 0.00029 37.2 16.9 162 199-374 32-236 (281)
446 COG0284 PyrF Orotidine-5'-phos 91.8 5.7 0.00012 38.9 14.2 174 198-393 25-232 (240)
447 PRK07094 biotin synthase; Prov 91.7 15 0.00032 36.5 18.5 169 199-373 75-278 (323)
448 cd04741 DHOD_1A_like Dihydroor 91.7 1.1 2.4E-05 44.5 9.4 45 227-272 230-276 (294)
449 PRK04302 triosephosphate isome 91.6 0.94 2E-05 43.0 8.5 80 201-282 125-216 (223)
450 CHL00200 trpA tryptophan synth 91.6 0.35 7.5E-06 47.7 5.7 43 228-272 192-235 (263)
451 PRK06559 nicotinate-nucleotide 91.6 1.3 2.8E-05 44.5 9.8 136 159-317 121-270 (290)
452 PRK06096 molybdenum transport 91.6 0.83 1.8E-05 45.7 8.4 141 159-317 109-265 (284)
453 PRK06978 nicotinate-nucleotide 91.4 1.7 3.7E-05 43.8 10.4 136 159-317 130-278 (294)
454 PF04309 G3P_antiterm: Glycero 91.3 1.3 2.8E-05 41.5 8.8 110 244-375 54-169 (175)
455 PLN02979 glycolate oxidase 91.2 1.5 3.2E-05 45.5 10.0 73 200-272 234-311 (366)
456 PF00701 DHDPS: Dihydrodipicol 91.1 16 0.00035 35.7 18.2 166 199-381 24-211 (289)
457 TIGR01362 KDO8P_synth 3-deoxy- 91.1 6.9 0.00015 38.8 14.0 140 218-374 48-220 (258)
458 COG0106 HisA Phosphoribosylfor 91.1 1.4 3.1E-05 43.1 9.2 76 308-393 43-122 (241)
459 PRK08673 3-deoxy-7-phosphohept 90.9 1.4 3.1E-05 45.0 9.5 88 274-376 143-235 (335)
460 PLN02493 probable peroxisomal 90.9 1.6 3.6E-05 45.1 10.0 73 200-272 235-312 (367)
461 PLN02591 tryptophan synthase 90.9 0.62 1.3E-05 45.7 6.6 43 229-272 180-222 (250)
462 TIGR02320 PEP_mutase phosphoen 90.8 4.9 0.00011 40.2 13.0 141 230-381 70-246 (285)
463 KOG4013 Predicted Cu2+ homeost 90.8 1.6 3.5E-05 41.8 9.0 162 197-369 16-203 (255)
464 PLN02446 (5-phosphoribosyl)-5- 90.8 0.92 2E-05 45.0 7.7 86 296-393 43-133 (262)
465 PRK13398 3-deoxy-7-phosphohept 90.8 1.6 3.4E-05 43.2 9.4 86 274-374 77-167 (266)
466 TIGR00734 hisAF_rel hisA/hisF 90.7 1.5 3.3E-05 41.9 9.0 90 178-273 124-218 (221)
467 PRK13396 3-deoxy-7-phosphohept 90.7 1.6 3.5E-05 44.9 9.7 91 272-377 149-244 (352)
468 cd00453 FTBP_aldolase_II Fruct 90.7 18 0.00038 37.4 16.9 142 238-380 84-277 (340)
469 cd00956 Transaldolase_FSA Tran 90.7 4.4 9.5E-05 38.6 12.0 124 178-317 53-186 (211)
470 TIGR02311 HpaI 2,4-dihydroxyhe 90.5 10 0.00023 36.9 14.7 179 183-376 7-232 (249)
471 TIGR00674 dapA dihydrodipicoli 90.5 19 0.00041 35.4 19.6 166 200-382 22-209 (285)
472 cd04733 OYE_like_2_FMN Old yel 90.4 0.92 2E-05 45.7 7.6 79 198-277 237-331 (338)
473 PRK04165 acetyl-CoA decarbonyl 90.3 2.8 6.1E-05 44.5 11.4 115 175-304 90-217 (450)
474 PLN02334 ribulose-phosphate 3- 90.3 1.1 2.3E-05 42.7 7.6 84 198-282 126-216 (229)
475 TIGR03239 GarL 2-dehydro-3-deo 90.3 4 8.7E-05 39.9 11.6 67 248-315 20-90 (249)
476 PRK08091 ribulose-phosphate 3- 90.1 4.8 0.0001 39.1 11.9 113 197-317 78-208 (228)
477 cd00516 PRTase_typeII Phosphor 90.1 1.4 3E-05 43.1 8.3 86 290-381 186-273 (281)
478 PRK14057 epimerase; Provisiona 90.0 7.9 0.00017 38.3 13.5 114 197-316 85-221 (254)
479 PRK07455 keto-hydroxyglutarate 90.0 2.1 4.6E-05 39.9 9.1 74 196-274 112-186 (187)
480 TIGR01496 DHPS dihydropteroate 90.0 5.3 0.00012 39.1 12.3 62 256-320 31-104 (257)
481 cd02932 OYE_YqiM_FMN Old yello 90.0 0.83 1.8E-05 46.0 6.8 79 198-277 242-329 (336)
482 cd00954 NAL N-Acetylneuraminic 90.0 21 0.00045 35.1 20.1 166 200-382 24-213 (288)
483 TIGR03239 GarL 2-dehydro-3-deo 89.9 14 0.0003 36.1 15.0 165 201-376 24-231 (249)
484 KOG0623 Glutamine amidotransfe 89.9 3.4 7.4E-05 42.7 11.0 190 194-393 266-533 (541)
485 COG4981 Enoyl reductase domain 89.9 2.1 4.5E-05 46.6 9.8 122 254-383 114-261 (717)
486 cd08579 GDPD_memb_like Glycero 89.7 14 0.00031 34.4 14.5 132 162-316 84-218 (220)
487 PRK05581 ribulose-phosphate 3- 89.7 1.3 2.9E-05 41.1 7.6 86 198-285 120-215 (220)
488 COG3010 NanE Putative N-acetyl 89.7 3.3 7.2E-05 40.0 10.1 80 201-283 138-225 (229)
489 PRK11197 lldD L-lactate dehydr 89.7 0.86 1.9E-05 47.4 6.8 72 201-272 257-333 (381)
490 cd08564 GDPD_GsGDE_like Glycer 89.6 7.2 0.00016 37.8 12.8 122 176-316 120-255 (265)
491 cd04724 Tryptophan_synthase_al 89.6 0.94 2E-05 43.7 6.7 86 185-272 127-219 (242)
492 COG2185 Sbm Methylmalonyl-CoA 89.6 1.8 3.8E-05 39.4 7.9 105 261-373 10-120 (143)
493 cd00377 ICL_PEPM Members of th 89.6 18 0.00039 35.1 15.5 154 203-380 22-231 (243)
494 PRK06015 keto-hydroxyglutarate 89.5 3.2 7E-05 39.5 10.1 113 240-374 7-123 (201)
495 PRK06106 nicotinate-nucleotide 89.5 2.3 5E-05 42.5 9.4 132 159-317 118-267 (281)
496 TIGR00640 acid_CoA_mut_C methy 89.3 1 2.3E-05 39.8 6.2 81 285-373 27-110 (132)
497 cd00952 CHBPH_aldolase Trans-o 89.3 13 0.00029 37.1 14.7 171 198-386 30-225 (309)
498 KOG2335 tRNA-dihydrouridine sy 89.2 2.3 5.1E-05 43.8 9.4 94 195-289 153-268 (358)
499 TIGR00259 thylakoid_BtpA membr 89.2 16 0.00036 36.1 15.0 104 175-286 138-254 (257)
500 PRK14566 triosephosphate isome 89.1 4.6 0.0001 40.0 11.1 126 255-388 89-254 (260)
No 1
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=100.00 E-value=8.4e-99 Score=746.88 Aligned_cols=337 Identities=83% Similarity=1.315 Sum_probs=314.3
Q ss_pred cCCCceeeccchhhhhhHHhhhHhhhcchhhhhhhcCCeEEEeCCCCCCCcccccceeeeecCCCCCcccHHHHHHHHHH
Q 015899 56 TKDGSATISSVMEDAETALKAKEWEVGMLINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKD 135 (398)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irrr~~~~~~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~ 135 (398)
++++++.+ +++.|+.++++||+||++|+++++|||+|||||||+++.+.+++++|++++++++|+|||++|+|+|+
T Consensus 2 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~irr~~~~~~~~~~~~~~~~~~~~~~~~~~~iLe~Iv~~k~ 77 (338)
T PLN02460 2 SKSGSALY----DDMFNALEVKEWEVGMSQNEIAASQGIRIRRRPPTGPPLHYVGPFQFRLQNEGNTPRNILEEIVWYKD 77 (338)
T ss_pred Cccchhhh----hhhcchhHHHHhhccccchhccccCCceEecCCCCCcccccccccccccccccccHhHHHHHHHHHHH
Confidence 34555554 67999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 015899 136 VEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS 215 (398)
Q Consensus 136 ~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aIS 215 (398)
.||+++++++|+.+|++.+...|++++|..||++.....++++|||||||+|||||+|++++||+++|+.|+++||+|||
T Consensus 78 ~eV~~~k~~~~l~~l~~~~~~~~~~r~f~~aL~~~~~~~g~~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aIS 157 (338)
T PLN02460 78 VEVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRTGQPGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLS 157 (338)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCcCHHHHHHhhccccCCcceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEE
Confidence 99999999999999999888888899999999863211245899999999999999999999999999999999999999
Q ss_pred EeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc
Q 015899 216 ILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295 (398)
Q Consensus 216 VLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV 295 (398)
||||++||+||++||..||++++++||||||||+||||||+||.+|||+||||+++|++++|.+|+++|++|||++||||
T Consensus 158 VLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 158 VLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred EecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999998548999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 296 HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
||.+|+++|+++.|+++||||||||+||++|+++|.+|++..++..++|.++++||||||+|++|+.++.++|+||||||
T Consensus 238 H~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVG 317 (338)
T PLN02460 238 HDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVG 317 (338)
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 99999999999658999999999999999999999999984333335457899999999999999999999999999999
Q ss_pred ccccCCCChHHHHHhhhcCcC
Q 015899 376 ESIVKQDDPGKGITGLFGKDI 396 (398)
Q Consensus 376 eaLmk~~dp~~~i~~L~~~~~ 396 (398)
|+||+++||++++++|++++|
T Consensus 318 EsLMr~~dp~~~l~~L~~~~~ 338 (338)
T PLN02460 318 ESLVKQDDPGKGIAGLFGKDI 338 (338)
T ss_pred HHHhCCCCHHHHHHHHhCCCC
Confidence 999999999999999999875
No 2
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-79 Score=567.31 Aligned_cols=279 Identities=58% Similarity=0.903 Sum_probs=265.9
Q ss_pred CcccccceeeeecCCCCCcccHHHHHHHHHHHHHHHHHhcCC---hHHHHHhhhc--CCCCccHHHHHHhhhhcCCCceE
Q 015899 105 PLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRP---LSMLKNALDN--APPARDFIGALMAANQRTGLPAL 179 (398)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~p~~iLe~Iv~~K~~ev~~~k~~~p---l~~l~~~~~~--~~~~~~f~~aL~~~~~~~~~~~v 179 (398)
|-.++++.++++.+ |++|||+|.|+|..+|+++|+ .| +..|++.+.. +||.+||+.+|+.++ .++++
T Consensus 2 ~~n~~sp~e~rl~n----p~sILe~I~~~r~idvae~k~-~Pg~t~~dLq~~ld~~~aPP~~dF~~~Lr~sh---k~p~l 73 (289)
T KOG4201|consen 2 PENYSSPSETRLRN----PRSILEEIYARRDIDVAEMKE-KPGFTLQDLQKALDLGLAPPLQDFYGALRSSH---KRPGL 73 (289)
T ss_pred CCCCCCchhhhccC----HHHHHHHHHHHhhhhHHHhhc-CCCCcHHHHHHHHhccCCCchHHHHHHHHHhc---ccchH
Confidence 55678888999876 899999999999999999998 77 9999998877 899999999999876 47899
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHh-cCCCCc---EEeccccCCHHHHH
Q 015899 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCP---LLCKEFIVDAWQIY 255 (398)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~-a~v~lP---VL~KDFIid~~QI~ 255 (398)
||||||||||||+|+.+++|+++|++|+++||+|||||||++||+||++||..||+ +++.+| +||||||+||||||
T Consensus 74 iAEVKrASPSkG~ik~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~ 153 (289)
T KOG4201|consen 74 IAEVKRASPSKGIIKLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY 153 (289)
T ss_pred HHHHhhcCCCCCccccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999995 457888 99999999999999
Q ss_pred HHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhh
Q 015899 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~ 335 (398)
+||..|||+||||+++|++.+|++|+++|+.|||++|||||+++|+.+|+++ |+++||||||||++|++|+++|.+|++
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVDlstTskL~E 232 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVDLSTTSKLLE 232 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeechhhHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhcCcCCC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 398 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~~~~~ 398 (398)
.+ |+++++|++|||+||+|+....++|+.||||||+||++.||.+++.+|++.++|.
T Consensus 233 ~i------~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~r~~se 289 (289)
T KOG4201|consen 233 GI------PKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFGRSSSE 289 (289)
T ss_pred hC------ccceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhccccCC
Confidence 73 5799999999999999999999999999999999999999999999999998874
No 3
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=575.96 Aligned_cols=253 Identities=52% Similarity=0.827 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 015899 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (398)
Q Consensus 127 Le~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY 206 (398)
|++|+++|+.||++++...|+.+++......+ ++|.+||+.. .++++|||||||+|||+|.|+.++||+++|+.|
T Consensus 1 L~~I~~~k~~ev~~~~~~~~l~~~~~~~~~~~--r~f~~AL~~~---~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Y 75 (254)
T COG0134 1 LEKILADKKEEVAARKAKLPLAELRAKIRSAD--RDFYAALKEA---SGKPAVIAEVKKASPSKGLIREDFDPVEIAKAY 75 (254)
T ss_pred ChHHHHHHHHHHHhhhcccchHHHhhhhhhcc--ccHHHHHHhc---CCCceEEEEeecCCCCCCcccccCCHHHHHHHH
Confidence 68999999999999999999999998876555 9999999986 267999999999999999999999999999999
Q ss_pred HHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHH
Q 015899 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (398)
Q Consensus 207 ~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~ 286 (398)
+++||+|||||||++||+||+++|+.+|++ +++||||||||||||||++|+.+|||+||||+++|++++|++|+++|++
T Consensus 76 e~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~-v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~ 154 (254)
T COG0134 76 EEGGAAAISVLTDPKYFQGSFEDLRAVRAA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHE 154 (254)
T ss_pred HHhCCeEEEEecCccccCCCHHHHHHHHHh-cCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH
Q 015899 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366 (398)
Q Consensus 287 LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 366 (398)
|||++||||||.+|+++|+++ |+++||||||||+||++|+++|.+|++.+ |.++++|+||||+|++|+.++..
T Consensus 155 LGm~~LVEVh~~eEl~rAl~~-ga~iIGINnRdL~tf~vdl~~t~~la~~~------p~~~~~IsESGI~~~~dv~~l~~ 227 (254)
T COG0134 155 LGMEVLVEVHNEEELERALKL-GAKIIGINNRDLTTLEVDLETTEKLAPLI------PKDVILISESGISTPEDVRRLAK 227 (254)
T ss_pred cCCeeEEEECCHHHHHHHHhC-CCCEEEEeCCCcchheecHHHHHHHHhhC------CCCcEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999973 56899999999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhh
Q 015899 367 AGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 367 ~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
.|+|||||||+||+++|+.+++++|+
T Consensus 228 ~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 228 AGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred cCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 99999999999999999999999986
No 4
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=100.00 E-value=1.4e-75 Score=564.04 Aligned_cols=254 Identities=52% Similarity=0.816 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHH
Q 015899 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY 206 (398)
Q Consensus 127 Le~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY 206 (398)
|++|+++|++||+++|++.|+++|++.....+++++|.++|++. .++++|||||||+|||+|.|++++||.++|+.|
T Consensus 1 L~~Iv~~k~~ev~~~k~~~~~~~l~~~~~~~~~~~~f~~aL~~~---~~~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y 77 (254)
T PF00218_consen 1 LDEIVEHKREEVEERKKRVPLEELKKRIEAAPPPRSFKEALRQN---EGRISVIAEIKRASPSKGDIREDFDPAEIAKAY 77 (254)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHCSS-TTHHHHHHHSH---TSS-EEEEEE-SEETTTEESBSS-SHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHhcC---CCCCeEEEEeecCCCCCCccCccCCHHHHHHHH
Confidence 79999999999999999999999999998889999999999985 267999999999999999999999999999999
Q ss_pred HHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHH
Q 015899 207 EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL 286 (398)
Q Consensus 207 ~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~ 286 (398)
+++||+|||||||++||+||++||..+|++ +++||||||||+|||||++|+.+|||+||||+++|++++|++|+++|++
T Consensus 78 ~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~-~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~ 156 (254)
T PF00218_consen 78 EEAGAAAISVLTEPKFFGGSLEDLRAVRKA-VDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHS 156 (254)
T ss_dssp HHTT-SEEEEE--SCCCHHHHHHHHHHHHH-SSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCCCCCCHHHHHHHHHH-hCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH
Q 015899 287 LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366 (398)
Q Consensus 287 LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 366 (398)
+||++||||||.+|+++|+.+ |+++||||||||+||++|++++.+|++.+ |.++++||||||+|++|+.++..
T Consensus 157 lGle~lVEVh~~~El~~al~~-~a~iiGINnRdL~tf~vd~~~~~~l~~~i------p~~~~~iseSGI~~~~d~~~l~~ 229 (254)
T PF00218_consen 157 LGLEALVEVHNEEELERALEA-GADIIGINNRDLKTFEVDLNRTEELAPLI------PKDVIVISESGIKTPEDARRLAR 229 (254)
T ss_dssp TT-EEEEEESSHHHHHHHHHT-T-SEEEEESBCTTTCCBHTHHHHHHHCHS------HTTSEEEEESS-SSHHHHHHHCT
T ss_pred cCCCeEEEECCHHHHHHHHHc-CCCEEEEeCccccCcccChHHHHHHHhhC------ccceeEEeecCCCCHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999874 46799999999999999999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhh
Q 015899 367 AGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 367 ~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
+|+||||||++||+++||.+++++|
T Consensus 230 ~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 230 AGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp TT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred CCCCEEEECHHHhCCCCHHHHHhcC
Confidence 9999999999999999999999987
No 5
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=100.00 E-value=5.2e-70 Score=522.82 Aligned_cols=245 Identities=39% Similarity=0.592 Sum_probs=232.6
Q ss_pred cHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHH
Q 015899 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR 204 (398)
Q Consensus 125 ~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~ 204 (398)
+||++|+++|++||++++...|+..+ +++|.++|++ +.++|||||||+|||+|.|+.++||.++|+
T Consensus 3 ~iL~~I~~~k~~~v~~~~~~~~~~~~---------~~~~~~~l~~-----~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~ 68 (247)
T PRK13957 3 RVLREIIETKQNEIEKISRWDPLPDR---------GLPLRDSLKS-----RSFSIIAECKRKSPSAGELRADYHPVQIAK 68 (247)
T ss_pred cHHHHHHHHHHHHHHHHHhcCChhhh---------hhhHHHHHhC-----CCCeEEEEEecCCCCCCCcCCCCCHHHHHH
Confidence 69999999999999998888887753 3569999864 348999999999999999999999999999
Q ss_pred HHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHH
Q 015899 205 SYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKIC 284 (398)
Q Consensus 205 aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a 284 (398)
.|+++||+|||||||++||+||++||+.+|+. +++||||||||+|+|||++|+.+|||+||||+++|++++|++|++.|
T Consensus 69 ~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a 147 (247)
T PRK13957 69 TYETLGASAISVLTDQSYFGGSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHA 147 (247)
T ss_pred HHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHH
Q 015899 285 KLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 364 (398)
Q Consensus 285 ~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l 364 (398)
+++||++||||||.+|+++|+++ |+++||||||||+||++|++++.+|++.+ |.++++||||||+|++|+.++
T Consensus 148 ~~lGle~LVEVh~~~El~~a~~~-ga~iiGINnRdL~t~~vd~~~~~~L~~~i------p~~~~~IsESGI~t~~d~~~l 220 (247)
T PRK13957 148 SSLGMDVLVEVHTEDEAKLALDC-GAEIIGINTRDLDTFQIHQNLVEEVAAFL------PPNIVKVGESGIESRSDLDKF 220 (247)
T ss_pred HHcCCceEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhC------CCCcEEEEcCCCCCHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999999873 568899999999999999999
Q ss_pred HHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 365 QEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 365 ~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
..+ +||||||++||+++||.+++++|+
T Consensus 221 ~~~-~davLvG~~lm~~~d~~~~~~~l~ 247 (247)
T PRK13957 221 RKL-VDAALIGTYFMEKKDIRKAWLSLF 247 (247)
T ss_pred HHh-CCEEEECHHHhCCCCHHHHHHHhC
Confidence 987 999999999999999999999985
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=6.3e-69 Score=575.76 Aligned_cols=259 Identities=37% Similarity=0.570 Sum_probs=248.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHH
Q 015899 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (398)
Q Consensus 124 ~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA 203 (398)
|+||++|+++|++||++++..+|+++|++.+...+++++|..+|+.. +.++|||||||+|||+|.|++++||+++|
T Consensus 1 ~~iL~~Ii~~k~~ev~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~----~~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (695)
T PRK13802 1 MSVLDELVAGALEDQRTRELTVSLEEVKKAAAAAPAPIDATRWLKRA----DGIPVIAEIKRASPSKGHLSDIPDPAALA 76 (695)
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhCCCcccHHHHHhhC----CCCeEEEEeecCCCCCCcCCCCCCHHHHH
Confidence 47999999999999999999999999998877778889999999853 34799999999999999999999999999
Q ss_pred HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHH
Q 015899 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (398)
Q Consensus 204 ~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~ 283 (398)
+.|+++||+|||||||++||+||++||..+|+. +++||||||||+|+|||++|+.+|||+||||+++|++++|++|+++
T Consensus 77 ~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 155 (695)
T PRK13802 77 REYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDL 155 (695)
T ss_pred HHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHH
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHH
Q 015899 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 363 (398)
Q Consensus 284 a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~ 363 (398)
|+++||++||||||.+|+++|+++ |+++||||||||+||++|++++.+|++.+ |.++++||||||+|++|+.+
T Consensus 156 a~~lGme~LvEvh~~~el~~a~~~-ga~iiGINnRdL~tf~vd~~~t~~L~~~i------p~~~~~VsESGI~~~~d~~~ 228 (695)
T PRK13802 156 AHELGMTVLVETHTREEIERAIAA-GAKVIGINARNLKDLKVDVNKYNELAADL------PDDVIKVAESGVFGAVEVED 228 (695)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEEeCCCCccceeCHHHHHHHHhhC------CCCcEEEEcCCCCCHHHHHH
Confidence 999999999999999999999998 99999999999999999999999999873 56889999999999999999
Q ss_pred HHHcCCCEEEEcccccCCCChHHHHHhhhcC
Q 015899 364 VQEAGVKAVLVGESIVKQDDPGKGITGLFGK 394 (398)
Q Consensus 364 l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~ 394 (398)
++++|+|||||||+||+++||.+.+++|+..
T Consensus 229 l~~~G~davLIGeslm~~~dp~~~~~~l~~~ 259 (695)
T PRK13802 229 YARAGADAVLVGEGVATADDHELAVERLVKA 259 (695)
T ss_pred HHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999863
No 7
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=100.00 E-value=5.9e-69 Score=554.04 Aligned_cols=254 Identities=41% Similarity=0.683 Sum_probs=240.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHH
Q 015899 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203 (398)
Q Consensus 124 ~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA 203 (398)
.+||++|+++|++||++++...|+..+++... +++++|..+|+.. +++|||||||+|||+|.|++++||+++|
T Consensus 4 ~~iL~~Ii~~k~~ev~~~~~~~~~~~~~~~~~--~~~~~~~~al~~~-----~~~vIaEiKraSPs~G~i~~~~d~~~~a 76 (454)
T PRK09427 4 PTVLAKIVADKAIWVAARKQQQPLASFQNEIQ--PSDRSFYDALKGP-----KTAFILECKKASPSKGLIRDDFDPAEIA 76 (454)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCHHHHHhhcC--cCCCCHHHHHhcC-----CCceEEEeecCCCCCCccCCCCCHHHHH
Confidence 47999999999999999999999999988653 5679999999752 4799999999999999999999999999
Q ss_pred HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHH
Q 015899 204 RSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKI 283 (398)
Q Consensus 204 ~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~ 283 (398)
+.| ++||+|||||||++||+||++||+.+|++ +++||||||||+|+|||++|+.+|||+||||+++|++++|.+|+++
T Consensus 77 ~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~ 154 (454)
T PRK09427 77 RVY-KHYASAISVLTDEKYFQGSFDFLPIVRAI-VTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAV 154 (454)
T ss_pred HHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHh-CCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHH
Confidence 999 78899999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHH
Q 015899 284 CKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 363 (398)
Q Consensus 284 a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~ 363 (398)
|+++||++||||||.+|+++|+++ |+++||||||||+||++|++++.+|++.+ |.++++||||||+|++|+.+
T Consensus 155 a~~lGl~~lvEvh~~~El~~al~~-~a~iiGiNnRdL~t~~vd~~~~~~l~~~i------p~~~~~vseSGI~t~~d~~~ 227 (454)
T PRK09427 155 AHSLNMGVLTEVSNEEELERAIAL-GAKVIGINNRNLRDLSIDLNRTRELAPLI------PADVIVISESGIYTHAQVRE 227 (454)
T ss_pred HHHcCCcEEEEECCHHHHHHHHhC-CCCEEEEeCCCCccceECHHHHHHHHhhC------CCCcEEEEeCCCCCHHHHHH
Confidence 999999999999999999999998 99999999999999999999999999873 56889999999999999999
Q ss_pred HHHcCCCEEEEcccccCCCChHHHHHhhhcC
Q 015899 364 VQEAGVKAVLVGESIVKQDDPGKGITGLFGK 394 (398)
Q Consensus 364 l~~~GadaVLVGeaLmk~~dp~~~i~~L~~~ 394 (398)
+.. |+|||||||+||+++||.+++++|+..
T Consensus 228 ~~~-~~davLiG~~lm~~~d~~~~~~~L~~~ 257 (454)
T PRK09427 228 LSP-FANGFLIGSSLMAEDDLELAVRKLILG 257 (454)
T ss_pred HHh-cCCEEEECHHHcCCCCHHHHHHHHhcc
Confidence 976 799999999999999999999999753
No 8
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=100.00 E-value=2e-63 Score=480.53 Aligned_cols=258 Identities=55% Similarity=0.862 Sum_probs=245.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhcCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHH
Q 015899 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEI 202 (398)
Q Consensus 123 p~~iLe~Iv~~K~~ev~~~k~~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~i 202 (398)
++++|++|+++|+++|++++..+|+++|++++...+.+++|..+|+. ++++|||||||+|||+|+|+.+++|+++
T Consensus 1 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~vIaeik~~sps~g~i~~~~~~~~~ 75 (260)
T PRK00278 1 MMDILDKIVAYKREEVAARKAQVPLAELKARAAAAPPPRDFAAALRA-----GKPAVIAEVKKASPSKGVIREDFDPVEI 75 (260)
T ss_pred CccHHHHHHHHHHHHHHHHhccCCHHHHHHHHhhCCCCcCHHHHHhc-----CCCeEEEEeeCCCCCCCccCCCCCHHHH
Confidence 36899999999999999999999999999987777778999999983 4589999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHH
Q 015899 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTK 282 (398)
Q Consensus 203 A~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~ 282 (398)
|+.|+++||+|||||||+.||+|+++||..||+. +++|||+||||+|+|||++++.+|||+|+|+++.|++++++++++
T Consensus 76 A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~ 154 (260)
T PRK00278 76 AKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLD 154 (260)
T ss_pred HHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHH
Confidence 9999999999999999999999999999999997 999999999999999999999999999999999999889999999
Q ss_pred HHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHH
Q 015899 283 ICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 362 (398)
Q Consensus 283 ~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~ 362 (398)
+|+++||++||||||.+|+++|.++ |+++||+||||+.+|++|++.+.+|++.+ |.+.++|+||||+|++|+.
T Consensus 155 ~a~~lGl~~lvevh~~~E~~~A~~~-gadiIgin~rdl~~~~~d~~~~~~l~~~~------p~~~~vIaegGI~t~ed~~ 227 (260)
T PRK00278 155 YAHSLGLDVLVEVHDEEELERALKL-GAPLIGINNRNLKTFEVDLETTERLAPLI------PSDRLVVSESGIFTPEDLK 227 (260)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHhC------CCCCEEEEEeCCCCHHHHH
Confidence 9999999999999999999999998 99999999999999999999999998863 3457999999999999999
Q ss_pred HHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 363 YVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 363 ~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
++.++|+|+|+||++||+++||.+++++|..
T Consensus 228 ~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 228 RLAKAGADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred HHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999865
No 9
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=100.00 E-value=2e-43 Score=329.83 Aligned_cols=209 Identities=54% Similarity=0.887 Sum_probs=199.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI 254 (398)
++++||||+||+|||+|.++...+|.++|+.|+++||++|||+|++.+|+|++++++.||+. +++||++||||++++|+
T Consensus 9 ~~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v 87 (217)
T cd00331 9 GGLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQI 87 (217)
T ss_pred CCceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeecCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
.+++++|||+|+|+.+.++.++++++++.++.+|++++++||+.+|++++.++ |+++||+|+++.+++.+|++.+.++.
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~-g~~~i~~t~~~~~~~~~~~~~~~~l~ 166 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALAL-GAKIIGINNRDLKTFEVDLNTTERLA 166 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHc-CCCEEEEeCCCccccCcCHHHHHHHH
Confidence 99999999999999999998889999999999999999999999999999998 99999999999999999998888887
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
+.+ +.+++++++|||++++|+.++.++|+|+|+||++||+..||.+.+++|
T Consensus 167 ~~~------~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 167 PLI------PKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred HhC------CCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 652 246899999999999999999999999999999999999999999875
No 10
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.93 E-value=9.3e-25 Score=204.86 Aligned_cols=196 Identities=22% Similarity=0.282 Sum_probs=165.1
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE---ecc-----ccC
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE-----FIV 249 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL---~KD-----FIi 249 (398)
++|.-+.-. | .+.|+...++.++|++|.++||.++++ +++++++.+|+. +++|+| +|| |++
T Consensus 6 ~~~~~~~~~-~-~~~~~~~~~~~~~a~a~~~~G~~~~~~--------~~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~ 74 (221)
T PRK01130 6 GLIVSCQAL-P-GEPLHSPEIMAAMALAAVQGGAVGIRA--------NGVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYI 74 (221)
T ss_pred CEEEEecCC-C-CCCCCCHHHHHHHHHHHHHCCCeEEEc--------CCHHHHHHHHHh-CCCCEEEEEecCCCCCCceE
Confidence 345444333 2 356888999999999999999999998 458999999997 899997 888 566
Q ss_pred CHH--HHHHHHHcCcCEEEEeccCCC-h--HHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc-
Q 015899 250 DAW--QIYYARTKGADAVLLIAAVLP-D--LDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET- 322 (398)
Q Consensus 250 d~~--QI~eAr~~GADaVLLiaaiL~-~--~~L~~Li~~a~~-LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t- 322 (398)
+++ |+.+++.+|||.|+++...+. + .++.++++.+++ .|+.+++++||.+|+.++.++ |+++|++|+++++.
T Consensus 75 ~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~-G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 75 TPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL-GFDFIGTTLSGYTEE 153 (221)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-CCCEEEcCCceeecC
Confidence 664 899999999999999988763 2 578999999999 999999999999999999997 99999998877643
Q ss_pred ----cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 323 ----FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 323 ----f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
...+++...++.+. .+++++++|||+|++|+.++.++|+|+|+||++|+++.++.+.+.+++.
T Consensus 154 ~~~~~~~~~~~i~~i~~~--------~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~~~~~~~~ 220 (221)
T PRK01130 154 TKKPEEPDFALLKELLKA--------VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITKWFVDALK 220 (221)
T ss_pred CCCCCCcCHHHHHHHHHh--------CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHHHHHHHhh
Confidence 33445555555543 2578999999999999999999999999999999999999999988765
No 11
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.92 E-value=2.4e-24 Score=199.43 Aligned_cols=175 Identities=21% Similarity=0.357 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE--e-cc------ccCCHH-HHHHHHHcCcCEEEEe
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--C-KE------FIVDAW-QIYYARTKGADAVLLI 268 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL--~-KD------FIid~~-QI~eAr~~GADaVLLi 268 (398)
+..||++.++|||.+|++ .+++|++.||+. +++||+ . +| ||.+.. .+.+...+|||.|.|+
T Consensus 1 m~~mA~Aa~~gGA~giR~--------~~~~dI~aik~~-v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD 71 (192)
T PF04131_consen 1 MARMAKAAEEGGAVGIRA--------NGVEDIRAIKKA-VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD 71 (192)
T ss_dssp HHHHHHHHHHCT-SEEEE--------ESHHHHHHHHTT-B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE
T ss_pred CHHHHHHHHHCCceEEEc--------CCHHHHHHHHHh-cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe
Confidence 468999999999999999 699999999997 999997 3 33 444443 6888899999999999
Q ss_pred ccCCC-hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc----cChhhHHHHhhhhcccccc
Q 015899 269 AAVLP-DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE----VDNSNTKKLLEGERGEIIR 343 (398)
Q Consensus 269 aaiL~-~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~----vDl~~t~~L~~~i~~~~i~ 343 (398)
++... +..|.+|++..|..+..+|.+|.|.||...|.++ |+|+||++.+.|+... +|++...+|..
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~-G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~-------- 142 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL-GFDIIGTTLSGYTPYTKGDGPDFELVRELVQ-------- 142 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT-T-SEEE-TTTTSSTTSTTSSHHHHHHHHHHH--------
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc-CCCEEEcccccCCCCCCCCCCCHHHHHHHHh--------
Confidence 99763 3679999999999999999999999999999998 9999999998887765 44555555543
Q ss_pred cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 344 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 344 ~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
.++++|+||+|+||+++.+++++||++|+||++|+++..+++.+.+-+
T Consensus 143 -~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~It~~F~~ai 190 (192)
T PF04131_consen 143 -ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEITKRFVDAI 190 (192)
T ss_dssp -TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHHHHHHHHHC
T ss_pred -CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999998887654
No 12
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.92 E-value=7.5e-24 Score=198.69 Aligned_cols=190 Identities=20% Similarity=0.248 Sum_probs=163.8
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE---eccc-----cC
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKEF-----IV 249 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL---~KDF-----Ii 249 (398)
++|.-+.-- ++|.+++..++.++|++|.++|+.++|+ +++++++.+|+. +++|++ +||| ++
T Consensus 10 ~~~~~~~~~--~~~~~~~~~~i~~~a~~~~~~G~~~~~~--------~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~i 78 (219)
T cd04729 10 GLIVSCQAL--PGEPLHSPEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYI 78 (219)
T ss_pred CeEEEccCC--CCCCcCcHHHHHHHHHHHHHCCCeEEEc--------CCHHHHHHHHHh-CCCCEEEEEecCCCCCCcee
Confidence 567666554 7899999999999999999999999997 899999999986 899998 6888 56
Q ss_pred CHH--HHHHHHHcCcCEEEEeccCCC-h--HHHHHHHHHHHHcC-CcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc-
Q 015899 250 DAW--QIYYARTKGADAVLLIAAVLP-D--LDIRYMTKICKLLG-LTALVEVHDEREMDRVLGIEGIELIGINNRNLET- 322 (398)
Q Consensus 250 d~~--QI~eAr~~GADaVLLiaaiL~-~--~~L~~Li~~a~~LG-L~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t- 322 (398)
+++ |++.++++|||.|+++...+. + +++.++++.+++.| +.++++++|.+|+.++.++ |+++|++|+++++.
T Consensus 79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~-G~d~i~~~~~g~t~~ 157 (219)
T cd04729 79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKL-GFDIIGTTLSGYTEE 157 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHc-CCCEEEccCcccccc
Confidence 666 999999999999999988763 2 37899999999998 9999999999999999997 99999998765533
Q ss_pred ----cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHH
Q 015899 323 ----FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKG 387 (398)
Q Consensus 323 ----f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~ 387 (398)
...+++...++.+. .++++++.|||++++|+.++.++|||+|+||++||+.+||++.
T Consensus 158 ~~~~~~~~~~~l~~i~~~--------~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~~ 218 (219)
T cd04729 158 TAKTEDPDFELLKELRKA--------LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITGW 218 (219)
T ss_pred ccCCCCCCHHHHHHHHHh--------cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhhh
Confidence 34456665665543 2588999999999999999999999999999999999999875
No 13
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.1e-23 Score=193.59 Aligned_cols=195 Identities=23% Similarity=0.308 Sum_probs=166.0
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE---ecc------cc
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL---CKE------FI 248 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL---~KD------FI 248 (398)
++|.-+-.- | ..-++..+-+..||++.+++||.+|++ ++.+|++++|+. |++||+ .+| ||
T Consensus 16 glIVSCQal-~-~~pl~~~~iv~~mA~Aa~~gGAvgiR~--------~gv~dIkai~~~-v~vPIIGIiKrd~~~s~v~I 84 (229)
T COG3010 16 GLIVSCQAL-P-GEPLDSPEIVAAMALAAEQGGAVGIRI--------EGVEDIKAIRAV-VDVPIIGIIKRDYPDSPVRI 84 (229)
T ss_pred CeEEEeecC-C-CCCCcchhHHHHHHHHHHhCCcceEee--------cchhhHHHHHhh-CCCCeEEEEecCCCCCCcee
Confidence 466666422 1 123666788999999999999999999 799999999997 999986 566 34
Q ss_pred CCHH-HHHHHHHcCcCEEEEeccCCC--hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccc--
Q 015899 249 VDAW-QIYYARTKGADAVLLIAAVLP--DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF-- 323 (398)
Q Consensus 249 id~~-QI~eAr~~GADaVLLiaaiL~--~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf-- 323 (398)
.+.. +|.+..++||+.|.++++..+ +.++++|+++.|..|...|.+|+|.+|...|.++ |+++||.+.+.|+..
T Consensus 85 TptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~-G~D~IGTTLsGYT~~~~ 163 (229)
T COG3010 85 TPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL-GFDIIGTTLSGYTGYTE 163 (229)
T ss_pred cccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc-CCcEEecccccccCCCC
Confidence 3332 688999999999999999874 3379999999999999999999999999999998 999999998888773
Q ss_pred ---ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 324 ---EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 324 ---~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.|++..++|.+ .++.+|+||+|+||++++++.+.|+++|+||+||+|++.+++.+.+.+.
T Consensus 164 ~~~~pDf~lvk~l~~---------~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ik 227 (229)
T COG3010 164 KPTEPDFQLVKQLSD---------AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDAIK 227 (229)
T ss_pred CCCCCcHHHHHHHHh---------CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHHHh
Confidence 567777777655 4789999999999999999999999999999999999999998887654
No 14
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.82 E-value=5.2e-19 Score=166.36 Aligned_cols=176 Identities=21% Similarity=0.276 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCH---HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~---edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.||.++|+.|.+.||.+|+|++.+.+|.|+. +.++.+++. +++|++.+++|.+..++.++..+|||.|++++..+.
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4999999999999999999999999998875 666777776 899999999999999999999999999999988886
Q ss_pred hHHHHHHHHHHHHcCCcE-E---------EEcC--------CHHHH-HHHhccCCCc--EEeeccccCcccccChhhHHH
Q 015899 274 DLDIRYMTKICKLLGLTA-L---------VEVH--------DEREM-DRVLGIEGIE--LIGINNRNLETFEVDNSNTKK 332 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~-L---------VEVh--------t~eEl-~rAl~l~Ga~--iIGINnRdL~tf~vDl~~t~~ 332 (398)
+. +.+.+.++.+|.+. + +.++ +..++ ++..+. |++ ++.-.+++.++..+|++...+
T Consensus 107 d~--~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-g~~~ii~~~~~~~g~~~g~~~~~i~~ 183 (230)
T TIGR00007 107 NP--DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEEL-GLEGIIYTDISRDGTLSGPNFELTKE 183 (230)
T ss_pred CH--HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhC-CCCEEEEEeecCCCCcCCCCHHHHHH
Confidence 53 44556666777553 2 2222 33333 445554 887 334456777788889888888
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 384 (398)
+.+. .+++++++|||.+++|++++.+.||++|+||+++++..-+
T Consensus 184 i~~~--------~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~~~~ 227 (230)
T TIGR00007 184 LVKA--------VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEGKIT 227 (230)
T ss_pred HHHh--------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence 8764 3679999999999999999999999999999999987543
No 15
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.81 E-value=1.2e-18 Score=170.04 Aligned_cols=180 Identities=21% Similarity=0.241 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCcEEEEe----ccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVL----Td~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+++|+..+++||.++.+| .|..--+| +++|++.|++. |++||+.+--+-+-.++.+..++|+|.| .++
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~-V~iPVIGi~K~~~~~Ea~~L~eaGvDiI--DaT 94 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDMI--DES 94 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh-CCCCeEEeeehhHHHHHHHHHHcCCCEE--ecc
Confidence 489999999999999997 56666665 89999999997 9999974322223556666778999999 565
Q ss_pred CC-ChHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc--------------------------
Q 015899 271 VL-PDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET-------------------------- 322 (398)
Q Consensus 271 iL-~~~~L~~Li~~a~~-LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t-------------------------- 322 (398)
.. .+ +.+++...+. ++..+|.+|+|++|+.++.++ |+++||++...++.
T Consensus 95 ~r~rP--~~~~~~~iK~~~~~l~MAD~stleEal~a~~~-Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t 171 (283)
T cd04727 95 EVLTP--ADEEHHIDKHKFKVPFVCGARNLGEALRRISE-GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEE 171 (283)
T ss_pred CCCCc--HHHHHHHHHHHcCCcEEccCCCHHHHHHHHHC-CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 43 44 5777777775 699999999999999999998 99999999633222
Q ss_pred -------cccChhhHHHHhhhhcccccccCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 323 -------FEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 323 -------f~vDl~~t~~L~~~i~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
..+|++...++.+. ..+++| ++|||+||+++..++++||++|+||++||+++||....++|..
T Consensus 172 ~~~~~~~~~~d~elLk~l~~~--------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ 243 (283)
T cd04727 172 LYAVAKEIQAPYELVKETAKL--------GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVE 243 (283)
T ss_pred HHhhhcccCCCHHHHHHHHHh--------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 23466666666553 235665 9999999999999999999999999999999999999888864
No 16
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.79 E-value=2.8e-18 Score=161.32 Aligned_cols=179 Identities=22% Similarity=0.256 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|.+.|++.++|++...++.|+..|+..+ ++. +++||+.+++|.+..++.++...|||.|+++++.+
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 45999999999999999999999999998865555555 476 89999999999999999999999999999999998
Q ss_pred ChH-HHHHHHHHHHH---cCCcE---EEEcC--------CHHHHHHHhccCCCc-EEee-ccccCcccccChhhHHHHhh
Q 015899 273 PDL-DIRYMTKICKL---LGLTA---LVEVH--------DEREMDRVLGIEGIE-LIGI-NNRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 273 ~~~-~L~~Li~~a~~---LGL~~---LVEVh--------t~eEl~rAl~l~Ga~-iIGI-NnRdL~tf~vDl~~t~~L~~ 335 (398)
++. .+.++.+...+ +++++ .+.+| +..|+.+.+.-.|++ ++.. ++|+.+...+|++...++.+
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~ 187 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA 187 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH
Confidence 754 47777766432 35553 34444 335555554433788 4444 46788888899999888876
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDD 383 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~d 383 (398)
. .++++|++|||.|++|+.++.+.| |+||+||++|+....
T Consensus 188 ~--------~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~~~ 228 (233)
T PRK00748 188 A--------VPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEGKF 228 (233)
T ss_pred h--------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcCCc
Confidence 5 247899999999999999999998 999999999998764
No 17
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.79 E-value=4e-18 Score=166.44 Aligned_cols=180 Identities=23% Similarity=0.259 Sum_probs=142.2
Q ss_pred HHHHHHHHHcCCcEEEEe----ccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVL----Td~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
.++|+..+++||.++.+| .|...-+| ++++++.|+++ |++||+.|--|-+-.++....++|+|.| +++
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~-V~iPVig~~kigh~~Ea~~L~~~GvDiI--DeT 96 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDA-VSIPVMAKVRIGHFVEAQILEALGVDYI--DES 96 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHh-CCCCEEEEeeccHHHHHHHHHHcCCCEE--Ecc
Confidence 489999999999999988 56666666 89999999997 9999985443334444445556999999 455
Q ss_pred -CCChHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc--------------------------
Q 015899 271 -VLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET-------------------------- 322 (398)
Q Consensus 271 -iL~~~~L~~Li~~a~~-LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t-------------------------- 322 (398)
.+++ ..+++...+. ++...|.+++|++|+.++.+. |+++|+++..-++.
T Consensus 97 e~lrP--ade~~~~~K~~f~vpfmad~~~l~EAlrai~~-GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~ 173 (287)
T TIGR00343 97 EVLTP--ADWTFHIDKKKFKVPFVCGARDLGEALRRINE-GAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEE 173 (287)
T ss_pred CCCCc--HHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchh
Confidence 4555 4666666665 699999999999999999997 99999998322221
Q ss_pred --------cccChhhHHHHhhhhcccccccCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 323 --------FEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 323 --------f~vDl~~t~~L~~~i~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.++++...++.+. ..+++| ++|||+||+|+..++++|||+|+||++|++++||.+..+.|+
T Consensus 174 ~~~~~a~~~~~~~elLkei~~~--------~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv 245 (287)
T TIGR00343 174 DLAAVAKELRVPVELLLEVLKL--------GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIV 245 (287)
T ss_pred HHhhhhcccCCCHHHHHHHHHh--------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHH
Confidence 23455555555443 246677 999999999999999999999999999999999999888875
Q ss_pred c
Q 015899 393 G 393 (398)
Q Consensus 393 ~ 393 (398)
.
T Consensus 246 ~ 246 (287)
T TIGR00343 246 E 246 (287)
T ss_pred H
Confidence 4
No 18
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.76 E-value=2.3e-17 Score=155.85 Aligned_cols=166 Identities=19% Similarity=0.251 Sum_probs=135.8
Q ss_pred CCCCHHHHHHHHhcCCCCcEEeccccCCHH-------HHHHHHHcCcCEEEEecc--CCChHHHHHHHHHHHHcCCcEEE
Q 015899 223 FKGSFENLEAVRSAGVKCPLLCKEFIVDAW-------QIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALV 293 (398)
Q Consensus 223 F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~-------QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~~LV 293 (398)
+..++.+|..+++. +++||..+++-..++ .+..++.+|||+|+++.+ .+...++.++++.|+++||.+++
T Consensus 41 ~~p~~~~l~~v~~~-~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~ 119 (223)
T PRK04302 41 VAPQALDIRRVAEE-VDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV 119 (223)
T ss_pred EECCHHHHHHHHHh-cCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE
Confidence 44789999999987 899999888754332 366778899999999986 56777899999999999999999
Q ss_pred EcCCHHHHHHHhccCCCcEEeeccccCcccc-----cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC
Q 015899 294 EVHDEREMDRVLGIEGIELIGINNRNLETFE-----VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368 (398)
Q Consensus 294 EVht~eEl~rAl~l~Ga~iIGINnRdL~tf~-----vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 368 (398)
++++.+++.++.+. ++++|+++++++.... .+.+...++.+.++. . ..+++++++|||++++++.++.+.|
T Consensus 120 ~v~~~~~~~~~~~~-~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~--~-~~~~pvi~GggI~~~e~~~~~~~~g 195 (223)
T PRK04302 120 CVNNPETSAAAAAL-GPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKK--V-NPDVKVLCGAGISTGEDVKAALELG 195 (223)
T ss_pred EcCCHHHHHHHhcC-CCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHh--c-cCCCEEEEECCCCCHHHHHHHHcCC
Confidence 99999999999887 8999999998654332 223344444443321 1 1367999999999999999999999
Q ss_pred CCEEEEcccccCCCChHHHHHhhhc
Q 015899 369 VKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 369 adaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+|||+||+++++.+||.+.+++|.+
T Consensus 196 adGvlVGsa~l~~~~~~~~~~~~~~ 220 (223)
T PRK04302 196 ADGVLLASGVVKAKDPEAALRDLVS 220 (223)
T ss_pred CCEEEEehHHhCCcCHHHHHHHHHh
Confidence 9999999999999999999999874
No 19
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.75 E-value=1.7e-17 Score=156.76 Aligned_cols=182 Identities=19% Similarity=0.197 Sum_probs=147.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEe------ccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEe
Q 015899 195 EDFDPVEIARSYEKGGAACLSIL------TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVL------Td~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (398)
...|+.++++.|.++|++|++|. +++.|. |+...+..++.. +.+|..++++....+++.+|...|||+|.+.
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~-~~~~~i~~~~~~-~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~ 96 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGIARAYGREYA-GDIPLIVKLNGS-TSLSPKDDNDKVLVASVEDAVRLGADAVGVT 96 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHHHHhcccccC-CCCcEEEEECCC-CCCCCCCCCchhhhcCHHHHHHCCCCEEEEE
Confidence 46799999999999999999999 888884 665566555543 5555558999889899999999999999887
Q ss_pred ccCCChH------HHHHHHHHHHHcCCcEEEEcCC----------HHHHHH----HhccCCCcEEeeccccCcccccChh
Q 015899 269 AAVLPDL------DIRYMTKICKLLGLTALVEVHD----------EREMDR----VLGIEGIELIGINNRNLETFEVDNS 328 (398)
Q Consensus 269 aaiL~~~------~L~~Li~~a~~LGL~~LVEVht----------~eEl~r----Al~l~Ga~iIGINnRdL~tf~vDl~ 328 (398)
....... ++.++.+.|+..|+.+++|++. .+++.+ +.++ |+++|++++ ..|++
T Consensus 97 ~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~-GaD~Ik~~~------~~~~~ 169 (235)
T cd00958 97 VYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL-GADIVKTKY------TGDAE 169 (235)
T ss_pred EecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH-CCCEEEecC------CCCHH
Confidence 7765432 5778888888999999999965 566666 7776 999999963 23788
Q ss_pred hHHHHhhhhcccccccCCceEEEecCC--CCHHH----HHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGL--FTPDD----IAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI--~t~eD----~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
...++.+.+ .+++++.||| .|++| +..+.++|+++|++|++|++.+||.+.+++|..
T Consensus 170 ~~~~i~~~~--------~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~ 232 (235)
T cd00958 170 SFKEVVEGC--------PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISA 232 (235)
T ss_pred HHHHHHhcC--------CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHH
Confidence 888887652 2446666776 67766 899999999999999999999999999988753
No 20
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.72 E-value=6.2e-17 Score=158.52 Aligned_cols=180 Identities=23% Similarity=0.280 Sum_probs=140.6
Q ss_pred HHHHHHHHHcCCcEEEEe----ccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 200 VEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVL----Td~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
.+.|+..+++||++|-+| .|..--+| +++++++|+++ |++||+.|--|-+-.++....++|+|.| .++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~-V~iPVigk~Righ~~Ea~~L~~~GvDiI--D~T 103 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKARIGHFVEAQILEALGVDYI--DES 103 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHh-CCCCeEEeehhhHHHHHHHHHHcCCCEE--ecc
Confidence 378888889999887765 34444444 89999999997 9999986554444444555567999999 454
Q ss_pred -CCChHHHHHHHHHHHH-cCCcEEEEcCCHHHHHHHhccCCCcEEeec------------------------cccCcc--
Q 015899 271 -VLPDLDIRYMTKICKL-LGLTALVEVHDEREMDRVLGIEGIELIGIN------------------------NRNLET-- 322 (398)
Q Consensus 271 -iL~~~~L~~Li~~a~~-LGL~~LVEVht~eEl~rAl~l~Ga~iIGIN------------------------nRdL~t-- 322 (398)
.+++ +.+++...+. ++...|.++.|++|+.++..+ |+++|+++ .+.|+.
T Consensus 104 e~lrp--ad~~~~~~K~~f~~~fmad~~~l~EAlrai~~-GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~ 180 (293)
T PRK04180 104 EVLTP--ADEEYHIDKWDFTVPFVCGARNLGEALRRIAE-GAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDE 180 (293)
T ss_pred CCCCc--hHHHHHHHHHHcCCCEEccCCCHHHHHHHHHC-CCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4666 4566666664 699999999999999999997 99999999 444433
Q ss_pred -------cccChhhHHHHhhhhcccccccCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 323 -------FEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 323 -------f~vDl~~t~~L~~~i~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
..+|++...++.+. ..+++| ++|||+||+|+..++++|||+|+||++|++++||.+..+.|..
T Consensus 181 ~~~~a~~~~~~~elL~ei~~~--------~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ 252 (293)
T PRK04180 181 LYTAAKELQAPYELVKEVAEL--------GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVE 252 (293)
T ss_pred HHhhccccCCCHHHHHHHHHh--------CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHH
Confidence 33566666666553 245666 9999999999999999999999999999999999999888764
No 21
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.64 E-value=1.2e-14 Score=136.57 Aligned_cols=177 Identities=23% Similarity=0.266 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|.+.||++|+|++....|.| ..+.++.+++. +++||+..++|.++.++.++...|||.|++....+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 459999999999999999999999888876 45566666776 78999999999999999999999999999998888
Q ss_pred ChHH-HHHHHHHHHHcCCcE-EEE-----------------cCCHHHHHHHhccCCCcEEeeccccC--cccccChhhHH
Q 015899 273 PDLD-IRYMTKICKLLGLTA-LVE-----------------VHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTK 331 (398)
Q Consensus 273 ~~~~-L~~Li~~a~~LGL~~-LVE-----------------Vht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~ 331 (398)
.+.+ +.++ ++.+|-+. ++- -.+..|+.+.+.-.|++.|-++.++- +.-..|++...
T Consensus 107 ~dp~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~ 183 (234)
T cd04732 107 KNPELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYK 183 (234)
T ss_pred hChHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHH
Confidence 6533 4444 44455421 111 22444554444323888777765432 22346777777
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 384 (398)
++.+. .++++++.|||.+++|+.++.+.|+++|+||+++++.+..
T Consensus 184 ~i~~~--------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~~~ 228 (234)
T cd04732 184 ELAAA--------TGIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGKIT 228 (234)
T ss_pred HHHHh--------cCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCCCC
Confidence 77654 3678999999999999999999999999999999998854
No 22
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.57 E-value=1e-13 Score=132.95 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=116.5
Q ss_pred HHHHHHHHhcCCCCcEEe----ccccCCHHH-HHHHHHcCcCEEEEeccCCC-hHHHHHHHHHHHHcCCcEEEEcCC---
Q 015899 227 FENLEAVRSAGVKCPLLC----KEFIVDAWQ-IYYARTKGADAVLLIAAVLP-DLDIRYMTKICKLLGLTALVEVHD--- 297 (398)
Q Consensus 227 ~edL~~Ir~a~v~lPVL~----KDFIid~~Q-I~eAr~~GADaVLLiaaiL~-~~~L~~Li~~a~~LGL~~LVEVht--- 297 (398)
++.++.+|+. +++|++. ++|+.++.+ +.++..+|||+|++....++ .+++.++++.++++||++.++++.
T Consensus 63 ~~~v~~vr~~-~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 63 WPLLEEVRKD-VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHHhcc-CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 7899999986 8999752 677778887 77889999999999754343 357899999999999999999996
Q ss_pred HHHHHHHhccCCCc--EEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 298 EREMDRVLGIEGIE--LIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 298 ~eEl~rAl~l~Ga~--iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
.++++..++. ... ++|+|++...+|..++....+.++.. .+ +.+++.+|||+|+++++.+.++|||+|+||
T Consensus 142 ~e~l~~~~~~-~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~-----~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 142 DLLIHRLSKL-SPLFIYYGLRPATGVPLPVSVERNIKRVRNL-----VG-NKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred HHHHHHHHHh-CCCEEEEEeCCCCCCCchHHHHHHHHHHHHh-----cC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 6677877765 333 34999998888877765433333321 12 346889999999999999999999999999
Q ss_pred ccccC
Q 015899 376 ESIVK 380 (398)
Q Consensus 376 eaLmk 380 (398)
++||+
T Consensus 215 Sai~~ 219 (244)
T PRK13125 215 TAFIE 219 (244)
T ss_pred HHHHH
Confidence 99997
No 23
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.56 E-value=1.4e-13 Score=132.12 Aligned_cols=183 Identities=22% Similarity=0.267 Sum_probs=145.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|++.||..||+++...+|.|...|+..| .+. +++||.-...|++..++.....+|++.|.+.+..+
T Consensus 30 ~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~-~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 30 SDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEA-TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHh-CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence 45999999999999999999999999999988776665 444 79999999999999999999999999999999988
Q ss_pred ChH-HHHHHHHHHHH---cCCcE---------EEEcCC--HHHHH-HHhccCCCcEEeec--cccCcccccChhhHHHHh
Q 015899 273 PDL-DIRYMTKICKL---LGLTA---------LVEVHD--EREMD-RVLGIEGIELIGIN--NRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 273 ~~~-~L~~Li~~a~~---LGL~~---------LVEVht--~eEl~-rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~ 334 (398)
.+. .++++.+.+.. +++++ |.|... ++|+. +-.+. |+.-|=++ .||-+--.+|++.+.+|.
T Consensus 109 ~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~-g~~~ii~TdI~~DGtl~G~n~~l~~~l~ 187 (241)
T COG0106 109 KNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEV-GLAHILYTDISRDGTLSGPNVDLVKELA 187 (241)
T ss_pred cCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhc-CCCeEEEEecccccccCCCCHHHHHHHH
Confidence 654 47776665531 34444 777764 44443 43443 66544444 455555578899999998
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccCCCC-hHHHH
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDD-PGKGI 388 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~d-p~~~i 388 (398)
+. .++++++.|||.+.+|++++.+. |+.+++||+||+...- +.+++
T Consensus 188 ~~--------~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~ 235 (241)
T COG0106 188 EA--------VDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEAL 235 (241)
T ss_pred HH--------hCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHH
Confidence 86 37899999999999999999999 9999999999998875 44444
No 24
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.55 E-value=3.3e-13 Score=124.01 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccC--CHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV--DAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIi--d~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
+..++++++.++ +.+|-+-+ +-.-..+++.++.+|+...++|+..---+. +.+++.+++.+|||.|++..... +.
T Consensus 14 ~~~~~~~~l~~~-i~~ieig~-~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~-~~ 90 (202)
T cd04726 14 EALELAKKVPDG-VDIIEAGT-PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP-LS 90 (202)
T ss_pred HHHHHHHHhhhc-CCEEEcCC-HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC-HH
Confidence 566788888887 78777721 111223478899998753588987532222 34688899999999999987553 34
Q ss_pred HHHHHHHHHHHcCCcEEEE---cCCHHHHHHHhccCCCcEEeec-cccCcccc--cChhhHHHHhhhhcccccccCCceE
Q 015899 276 DIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGIN-NRNLETFE--VDNSNTKKLLEGERGEIIRQKNIIV 349 (398)
Q Consensus 276 ~L~~Li~~a~~LGL~~LVE---Vht~eEl~rAl~l~Ga~iIGIN-nRdL~tf~--vDl~~t~~L~~~i~~~~i~~~~v~v 349 (398)
.+.++++.+++.|+.++++ .+|.+|..+++.. |+++++++ .++-.++. ...+...++.+. .++++
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~-~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i 161 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL-GVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--------LGVKV 161 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC-CCCEEEEcCcccccccCCCCCHHHHHHHHhh--------cCCCE
Confidence 6889999999999999864 5599999998886 99999996 45444542 223333333221 36789
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 350 VGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 350 VAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
++.||| +++++..+.++|+|+++||++|++.+||.+.+++|
T Consensus 162 ~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~~ 202 (202)
T cd04726 162 AVAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202 (202)
T ss_pred EEECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhcC
Confidence 999999 59999999999999999999999999999988764
No 25
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.54 E-value=3.2e-13 Score=127.95 Aligned_cols=184 Identities=24% Similarity=0.285 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH---HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL---~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.||.++|+.|.+.|++.+++.+-.....|...+. +.+++. +++|+.-...|.+..++..+..+|||.|.+.+..+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 4899999999999999999998877776655444 445554 789999988899999999999999999999998885
Q ss_pred hHH-HHHHHHHHHHcCCcEEEEcC---------------CHHH-HHHHhccCCCcEEeeccccC--cccccChhhHHHHh
Q 015899 274 DLD-IRYMTKICKLLGLTALVEVH---------------DERE-MDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLL 334 (398)
Q Consensus 274 ~~~-L~~Li~~a~~LGL~~LVEVh---------------t~eE-l~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~ 334 (398)
+.+ +.++.+.+..-.+-+=++++ +..+ ++++..+ |++-|=+++++. +.-..|++...++.
T Consensus 111 ~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~-G~~~i~~~~~~~~g~~~g~~~~~i~~i~ 189 (241)
T PRK13585 111 NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL-GAGSILFTNVDVEGLLEGVNTEPVKELV 189 (241)
T ss_pred ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEEeecCCCCcCCCCHHHHHHHH
Confidence 433 55555443210111112222 3444 4555554 888777765532 23346777777777
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
+. .++++++.|||.+++|+..+.++|+++|+||+++++.+..-..+..
T Consensus 190 ~~--------~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 190 DS--------VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred Hh--------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHH
Confidence 64 3579999999999999999999999999999999998876554433
No 26
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.53 E-value=6.3e-13 Score=123.00 Aligned_cols=183 Identities=20% Similarity=0.257 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccc-cCC--HHHHHHHHHcCcCEEEEeccCCCh
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEF-IVD--AWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDF-Iid--~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
+...+++.. .+|.+.|-|-| +-+...+++-++.+|+...+.++.+ |+ +.| .||+.++..+|||.|..-+. .++
T Consensus 13 ~a~~~~~~l-~~~v~~iev~~-~l~~~~g~~~i~~l~~~~~~~~i~~-d~k~~d~~~~~~~~~~~~Gad~i~vh~~-~~~ 88 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEIGT-PLIKNEGIEAVKEMKEAFPDRKVLA-DLKTMDAGEYEAEQAFAAGADIVTVLGV-ADD 88 (206)
T ss_pred HHHHHHHHc-ccCeeEEEeCC-HHHHHhCHHHHHHHHHHCCCCEEEE-EEeeccchHHHHHHHHHcCCCEEEEecc-CCH
Confidence 566788888 78888888821 1233456888999987522445553 43 234 46999999999999986543 355
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCH----HHHHHHhccCCCcEEeecc-ccCccccc-ChhhHHHHhhhhcccccccCCce
Q 015899 275 LDIRYMTKICKLLGLTALVEVHDE----REMDRVLGIEGIELIGINN-RNLETFEV-DNSNTKKLLEGERGEIIRQKNII 348 (398)
Q Consensus 275 ~~L~~Li~~a~~LGL~~LVEVht~----eEl~rAl~l~Ga~iIGINn-RdL~tf~v-Dl~~t~~L~~~i~~~~i~~~~v~ 348 (398)
..+.++++.+++.|+.+++++++. +++..+.++ |+++|++++ .+-.++.. .++...++.+.+ + .+.
T Consensus 89 ~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~------~-~~~ 160 (206)
T TIGR03128 89 ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHTGLDEQAKGQNPFEDLQTILKLV------K-EAR 160 (206)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcCCcCcccCCCCCHHHHHHHHHhc------C-CCc
Confidence 568999999999999999998664 788888887 999999973 22223322 233444444431 2 344
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 349 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 349 vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+...||| +++++..+.++|+++|.+|++|++.+||.+.++.|..
T Consensus 161 i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~ 204 (206)
T TIGR03128 161 VAVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRK 204 (206)
T ss_pred EEEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence 5558999 9999999999999999999999999999999988853
No 27
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.51 E-value=1.8e-12 Score=123.62 Aligned_cols=183 Identities=21% Similarity=0.178 Sum_probs=136.4
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
+....||.++|+.|.+.||+.|+|++..... |...++..+ .+. +.+||.....|.+..++..+..+||+.|.+.+
T Consensus 31 ~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~-~~~~v~vgGGir~~edv~~~l~~Ga~~viigt 108 (233)
T cd04723 31 LCSTSDPLDVARAYKELGFRGLYIADLDAIM-GRGDNDEAIRELAAA-WPLGLWVDGGIRSLENAQEWLKRGASRVIVGT 108 (233)
T ss_pred cccCCCHHHHHHHHHHCCCCEEEEEeCcccc-CCCccHHHHHHHHHh-CCCCEEEecCcCCHHHHHHHHHcCCCeEEEcc
Confidence 3435599999999999999999999998775 665555555 443 67999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEEc-----------CCHHHHHHHhccCCCc-EEeec-cccCcccccChhhHHHHhhh
Q 015899 270 AVLPDLDIRYMTKICKLLGLTALVEV-----------HDEREMDRVLGIEGIE-LIGIN-NRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~~LVEV-----------ht~eEl~rAl~l~Ga~-iIGIN-nRdL~tf~vDl~~t~~L~~~ 336 (398)
..++++-++++++...+--+-+=+++ -++.|+.+.+... ++ ++=++ +++-+...+|++...++.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~ 187 (233)
T cd04723 109 ETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR 187 (233)
T ss_pred eeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh
Confidence 98877336666655432112222222 2356655555432 44 33222 45555567888888888764
Q ss_pred hcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHH
Q 015899 337 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386 (398)
Q Consensus 337 i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~ 386 (398)
.++++++.|||.+++|+..+.++|+++|+||++++...-+..
T Consensus 188 --------~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g~~~~~ 229 (233)
T cd04723 188 --------ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDGGLTLE 229 (233)
T ss_pred --------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcCCCCHH
Confidence 368999999999999999999999999999999998865443
No 28
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.51 E-value=2e-12 Score=123.90 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCC---HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs---~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
||.++|+.|.+.||..|++++..... |. ++.++.+++. +++||.....|.+..++..+..+|||.|.+.++.+.+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~-~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGK-LDVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHH-cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 99999999999999999999988765 54 4555555665 7899999999999999999999999999999998876
Q ss_pred HH-HHHHHHHHHH---cCCcE---EE------E-cCCHHHH-HHHhccCCCcEEeeccccCc--ccccChhhHHHHhhhh
Q 015899 275 LD-IRYMTKICKL---LGLTA---LV------E-VHDEREM-DRVLGIEGIELIGINNRNLE--TFEVDNSNTKKLLEGE 337 (398)
Q Consensus 275 ~~-L~~Li~~a~~---LGL~~---LV------E-Vht~eEl-~rAl~l~Ga~iIGINnRdL~--tf~vDl~~t~~L~~~i 337 (398)
.+ +.++.+.+.+ +++++ .+ + ..+..|+ ++..++ |++-|-++.++-. .-.+|++...++.+.
T Consensus 111 p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~-G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~- 188 (241)
T PRK14024 111 PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSA-GCSRYVVTDVTKDGTLTGPNLELLREVCAR- 188 (241)
T ss_pred HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhc-CCCEEEEEeecCCCCccCCCHHHHHHHHhh-
Confidence 44 7777766543 34444 22 1 1233444 444454 8888878766543 224577777777654
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHH---cCCCEEEEcccccCCCChHHHHHhh
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQE---AGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~---~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
.++++++.|||.|++|+.++.+ .||+||+||++++.....-+.+.+.
T Consensus 189 -------~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 189 -------TDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred -------CCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 3689999999999999999875 4999999999999988766655443
No 29
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.50 E-value=1.3e-12 Score=125.47 Aligned_cols=192 Identities=19% Similarity=0.159 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC---HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs---~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
...||.++|+.|++.||..|+|..-..-..+. ++.++.+++. +++||.....|.+..++.++...|||+|.+....
T Consensus 28 ~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 28 DAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred ecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 35699999999999999999998766543343 4455566665 7899999999999999999999999999998888
Q ss_pred CChH-HHHHHHHHHHHcCCcEEEEc----------------------CCHHHHHHHhccCCCcEEeecc--ccCcccccC
Q 015899 272 LPDL-DIRYMTKICKLLGLTALVEV----------------------HDEREMDRVLGIEGIELIGINN--RNLETFEVD 326 (398)
Q Consensus 272 L~~~-~L~~Li~~a~~LGL~~LVEV----------------------ht~eEl~rAl~l~Ga~iIGINn--RdL~tf~vD 326 (398)
+.+. .+.++.+...+-.+-+-+++ ...+.++++.++ |++-|-++. |+-+.-..|
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~ii~~~i~~~g~~~g~d 185 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKNGYD 185 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHc-CCCEEEEcCCcCCCCCCCcC
Confidence 7543 35555444310002222222 123444666776 888777765 433444567
Q ss_pred hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccCCCChHHHHHhhhc-CcC
Q 015899 327 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDPGKGITGLFG-KDI 396 (398)
Q Consensus 327 l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp~~~i~~L~~-~~~ 396 (398)
++...++.+. .++++|+.|||.+++|+.++.+. |+++|++|++|.......+.+++.+. ..|
T Consensus 186 ~~~i~~~~~~--------~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK02083 186 LELTRAVSDA--------VNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGI 249 (253)
T ss_pred HHHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCC
Confidence 7777776654 35899999999999999999875 99999999999987776666555543 444
No 30
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.49 E-value=1.4e-12 Score=124.87 Aligned_cols=174 Identities=15% Similarity=0.101 Sum_probs=133.6
Q ss_pred CCHHHHHHHHHH-cCCcEEEEeccCCcCCCCHHHHHH---HHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 197 FDPVEIARSYEK-GGAACLSILTDEKYFKGSFENLEA---VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 197 ~dp~~iA~aY~~-~GA~aISVLTd~~~F~Gs~edL~~---Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.||.++|+.|.+ .||+.|+|++....+.|...|+.. +.+. +++||.....|.+..++..+..+|||.|.+.+..+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 499999999999 799999999999999887655554 4554 78999999999999999999999999999999988
Q ss_pred ChHH-HHHHHHHHHH---cCCcE---------EEEcCC--HHH-HHHHhccCCCcEEeec--cccCcccccChhhHHHHh
Q 015899 273 PDLD-IRYMTKICKL---LGLTA---------LVEVHD--ERE-MDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 273 ~~~~-L~~Li~~a~~---LGL~~---------LVEVht--~eE-l~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~ 334 (398)
++.+ ++++.+...+ +++++ |.|-+. +.| +++..++ |+.-|=+| +|+-+.-.+|++...++.
T Consensus 110 ~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~ 188 (234)
T PRK13587 110 QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLV 188 (234)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHH
Confidence 6544 7777665421 23443 112121 233 3333444 65433333 566666778998888887
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
+. .+++++++|||.+++|+..+.++|+++|+||+++++
T Consensus 189 ~~--------~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 189 KA--------TTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred Hh--------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 64 367899999999999999999999999999999998
No 31
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.46 E-value=2.5e-12 Score=123.84 Aligned_cols=182 Identities=19% Similarity=0.219 Sum_probs=139.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHH---hcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR---SAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir---~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|.+.||+.|+|++....+.|...|+..|+ +. + .||.....|.+..++..+..+|||.|.+.+..+
T Consensus 29 ~~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~-~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 29 EKDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEF-A-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhh-c-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 459999999999999999999999999999887775554 43 4 799999999999999999999999999999888
Q ss_pred ChH-HHHHHHHHHH--HcCCcE---------EEEcC--CHHH-HHHHhccCCCcEEeec--cccCcccccChhhHHHHhh
Q 015899 273 PDL-DIRYMTKICK--LLGLTA---------LVEVH--DERE-MDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 273 ~~~-~L~~Li~~a~--~LGL~~---------LVEVh--t~eE-l~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~~ 335 (398)
.+. .++++.++.. .+++++ |.|.. ++.| +.+..++ |+.-|=+| .||-+--.+|++...++..
T Consensus 107 ~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~ 185 (241)
T PRK14114 107 EDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAI 185 (241)
T ss_pred CCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHH
Confidence 664 4666633211 133333 33333 2333 4555554 76544444 5666666789999888876
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHc-----C-CCEEEEcccccCCCChHHHH
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-----G-VKAVLVGESIVKQDDPGKGI 388 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-----G-adaVLVGeaLmk~~dp~~~i 388 (398)
. .++++|+.||+.+.+|+.++.++ | ++|++||+||+...-..+.+
T Consensus 186 ~--------~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~ 236 (241)
T PRK14114 186 E--------AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_pred H--------CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHH
Confidence 4 36899999999999999999997 6 99999999999887654443
No 32
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.45 E-value=7.6e-12 Score=119.02 Aligned_cols=187 Identities=21% Similarity=0.173 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|++.|++.|.++.-..-..+ .++.++.+++. +++||+.-..|.+..++......|||+|.+....+
T Consensus 26 ~~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~ 104 (243)
T cd04731 26 AGDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence 449999999999999999998755432222 34556777776 88999999999999999999999999999988888
Q ss_pred ChH-HHHHHHHHHHH----cCCcEE-----------------EEcCCHHHHHHHhccCCCcEEeeccccC--cccccChh
Q 015899 273 PDL-DIRYMTKICKL----LGLTAL-----------------VEVHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNS 328 (398)
Q Consensus 273 ~~~-~L~~Li~~a~~----LGL~~L-----------------VEVht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~ 328 (398)
.+. .+.++.+.+.+ +++++. .+....+.+..+.+. |++.|-+..++- +.-..|++
T Consensus 105 ~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-G~d~i~v~~i~~~g~~~g~~~~ 183 (243)
T cd04731 105 ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEEL-GAGEILLTSMDRDGTKKGYDLE 183 (243)
T ss_pred hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHC-CCCEEEEeccCCCCCCCCCCHH
Confidence 543 36666555431 233221 022334555666775 999888865543 22345677
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccCCCChHHHHHhhh
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
...++... .++++++.|||.+++|+..+.+. |+|+|+||++|.......+.+++++
T Consensus 184 ~i~~i~~~--------~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 184 LIRAVSSA--------VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred HHHHHHhh--------CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHH
Confidence 76776553 36899999999999999999987 9999999999999888777666654
No 33
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.44 E-value=8.8e-12 Score=121.54 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC---
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP--- 273 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~--- 273 (398)
.||.++|+.|++.||..|||+....-...+.+-+..|++ +++||-....|.+ .++..+..+|||.|.+.+.+++
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~--~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA--YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh--CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCC
Confidence 689999999999999999999997733344455555555 5799999999985 9999999999999999998886
Q ss_pred --hHHHHHHHHHHH----HcCCcEE-------------EEcC--CHHH-HHHHhccCCCcEEeec--cccCcccccChhh
Q 015899 274 --DLDIRYMTKICK----LLGLTAL-------------VEVH--DERE-MDRVLGIEGIELIGIN--NRNLETFEVDNSN 329 (398)
Q Consensus 274 --~~~L~~Li~~a~----~LGL~~L-------------VEVh--t~eE-l~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~ 329 (398)
++-++++.+... .+++++- .|.. ++.| +.+..+. |+.-|=+| .||-+-..+|++.
T Consensus 120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~-g~~eii~TdI~rDGtl~G~d~el 198 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAA-YCDEFLVHGVDVEGKRLGIDEEL 198 (262)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHh-CCCEEEEEEEcCCCcccCCCHHH
Confidence 444777777652 1344443 2221 4456 4677775 77655555 6676677899999
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc--CCCEEEEcccc--cCCCCh
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA--GVKAVLVGESI--VKQDDP 384 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~--GadaVLVGeaL--mk~~dp 384 (398)
+.++.+. .++++|+.|||.+.+|+.++.++ |+.+++||+|| +...-.
T Consensus 199 ~~~l~~~--------~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~ 249 (262)
T PLN02446 199 VALLGEH--------SPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLP 249 (262)
T ss_pred HHHHHhh--------CCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCcc
Confidence 9999875 36899999999999999999998 58999999999 776643
No 34
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.42 E-value=1.3e-11 Score=116.63 Aligned_cols=173 Identities=23% Similarity=0.164 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|.+.|+..|.|..-..-..| +++.++.+++. +++||+....|.+..++.++...|||.|.+..+.+
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l 107 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 459999999999999999999877766545 44556666765 89999999999999999999999999999999988
Q ss_pred ChHH-HHHHHHHHHH----cCCcEEE------------------EcCCHHHHHHHhccCCCcEEeeccccC--cccccCh
Q 015899 273 PDLD-IRYMTKICKL----LGLTALV------------------EVHDEREMDRVLGIEGIELIGINNRNL--ETFEVDN 327 (398)
Q Consensus 273 ~~~~-L~~Li~~a~~----LGL~~LV------------------EVht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl 327 (398)
.+.+ ++++.+.... +.+++-- .....+.++++.+. |++.|-+..++- +.-..|+
T Consensus 108 ~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~i~~i~~~g~~~g~~~ 186 (232)
T TIGR03572 108 ENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQL-GAGEILLNSIDRDGTMKGYDL 186 (232)
T ss_pred cCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHc-CCCEEEEeCCCccCCcCCCCH
Confidence 7644 5555544311 1222110 01113444555565 888877776433 3345677
Q ss_pred hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHH-HHHcCCCEEEEcccc
Q 015899 328 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY-VQEAGVKAVLVGESI 378 (398)
Q Consensus 328 ~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~-l~~~GadaVLVGeaL 378 (398)
+...++.+. .++++++.|||++++|+.+ +.+.||++|+||++|
T Consensus 187 ~~~~~i~~~--------~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 187 ELIKTVSDA--------VSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 777777654 3679999999999999999 889999999999987
No 35
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.42 E-value=7.2e-12 Score=120.00 Aligned_cols=175 Identities=13% Similarity=0.049 Sum_probs=128.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
.||.++|+.|.+.||..++|++....+ |...++..+++. ....|+.....|.+..++.++...|||.|.+.+..+.+
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 399999999999999999999998887 555455555432 02359999999999999999999999999999888755
Q ss_pred -HHHHHHHHHHH----HcCCcE----------EEEcC-CHHHHHHHhccCCCc-EEeec-cccCcccccChhhHHHHhhh
Q 015899 275 -LDIRYMTKICK----LLGLTA----------LVEVH-DEREMDRVLGIEGIE-LIGIN-NRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 275 -~~L~~Li~~a~----~LGL~~----------LVEVh-t~eEl~rAl~l~Ga~-iIGIN-nRdL~tf~vDl~~t~~L~~~ 336 (398)
+.++++.+... .+++++ |.|.. ++.|+...++-.|+. +|=.+ .|+-+...+|++...++...
T Consensus 109 p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~ 188 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI 188 (232)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC
Confidence 44777776652 134444 33421 444544333323664 33333 56666678898887776542
Q ss_pred hcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 337 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 337 i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.+ ++++.|||.+.+|+.++.++|++|++||+||+..
T Consensus 189 --------~~-~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g 224 (232)
T PRK13586 189 --------RG-LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG 224 (232)
T ss_pred --------CC-CEEEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence 23 3788999999999999999999999999999854
No 36
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.42 E-value=9.5e-13 Score=125.30 Aligned_cols=178 Identities=23% Similarity=0.244 Sum_probs=133.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 194 ~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
....||.++|+.|.+.||..|+|++....+.|...|+..| ++. +.+||.....|.+..++.+...+|||.|.+.+.
T Consensus 26 ~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~-~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 26 VYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE-TGIPIQVGGGIRSIEDAERLLDAGADRVVIGTE 104 (229)
T ss_dssp CECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH-SSSEEEEESSE-SHHHHHHHHHTT-SEEEESHH
T ss_pred EECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc-CCccEEEeCccCcHHHHHHHHHhCCCEEEeChH
Confidence 3467999999999999999999999999888877777665 444 689999999999999999999999999999998
Q ss_pred CCC-hHHHHHHHHHHHH----cCCcEEEE-------------cCCHHHHHHHhccCCCcEEeec--cccCcccccChhhH
Q 015899 271 VLP-DLDIRYMTKICKL----LGLTALVE-------------VHDEREMDRVLGIEGIELIGIN--NRNLETFEVDNSNT 330 (398)
Q Consensus 271 iL~-~~~L~~Li~~a~~----LGL~~LVE-------------Vht~eEl~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t 330 (398)
.+. ++.++++.+.... +++++.-. +.-.+-++++.++ |+.-|=++ .|+-+-..+|++..
T Consensus 105 ~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~ 183 (229)
T PF00977_consen 105 ALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELL 183 (229)
T ss_dssp HHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHH
T ss_pred HhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHH
Confidence 875 4557887776553 34444322 2223335556665 77644444 56666667899888
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.++.+. .++++++.|||.+.+|+.++.+.|++||+||++|+..
T Consensus 184 ~~l~~~--------~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~g 226 (229)
T PF00977_consen 184 KQLAEA--------VNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHEG 226 (229)
T ss_dssp HHHHHH--------HSSEEEEESS--SHHHHHHHHHTTECEEEESHHHHTT
T ss_pred HHHHHH--------cCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhCC
Confidence 888775 3679999999999999999999999999999999765
No 37
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.42 E-value=1.3e-11 Score=118.99 Aligned_cols=192 Identities=21% Similarity=0.180 Sum_probs=139.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH---HHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA---VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~---Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.++|+.|.+.||+.|+|..-.....+...|+.. +++. +++||+....|.+..++.++..+|||.|.+....+
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 4599999999999999999999877766565555544 5565 78999999999999999999999999999998887
Q ss_pred ChH-HHHHHHHHHH----HcCCcEE-----------------EEc--CCHHH-HHHHhccCCCcEEeeccc--cCccccc
Q 015899 273 PDL-DIRYMTKICK----LLGLTAL-----------------VEV--HDERE-MDRVLGIEGIELIGINNR--NLETFEV 325 (398)
Q Consensus 273 ~~~-~L~~Li~~a~----~LGL~~L-----------------VEV--ht~eE-l~rAl~l~Ga~iIGINnR--dL~tf~v 325 (398)
.+. .++++.+.+. .+++++. .+- -+..+ +++..++ |++.|-++.+ +-+.-.+
T Consensus 108 ~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~-G~~~iivt~i~~~g~~~g~ 186 (254)
T TIGR00735 108 KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKL-GAGEILLTSMDKDGTKSGY 186 (254)
T ss_pred hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHc-CCCEEEEeCcCcccCCCCC
Confidence 653 3666655442 1222210 010 11223 3455555 8887777543 3333456
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhhc-CcCC
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLFG-KDIS 397 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~~-~~~~ 397 (398)
|++...++.+. .++++++.|||.+++|+.++.+.| +++|++|++|.........+++.+. ..|+
T Consensus 187 ~~~~~~~i~~~--------~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi~ 252 (254)
T TIGR00735 187 DLELTKAVSEA--------VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGIP 252 (254)
T ss_pred CHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCCc
Confidence 77777777654 368999999999999999999988 9999999999987766555555443 3443
No 38
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.41 E-value=1.2e-11 Score=113.99 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc-----CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a-----~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
.+..+..+...++|+++|++- ... ....+.+..+++. ..++|++..| ++..+..+|||.|.+....
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~a~~~gad~vh~~~~~ 91 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLR-EKG--LDTRERLELARALKELCRRYGVPLIVND------RVDLALAVGADGVHLGQDD 91 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEe-CCC--CCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCccc
Confidence 457778888888999999772 222 1233333333221 1466776544 3677888999999996654
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccccc------ChhhHHHHhhhhcccccccC
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV------DNSNTKKLLEGERGEIIRQK 345 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~v------Dl~~t~~L~~~i~~~~i~~~ 345 (398)
.... .++..+..|+.+-+.+||.+|+.++... |+++|++....-+.-+. .++...++.+. + .
T Consensus 92 ~~~~----~~~~~~~~~~~~g~~~~t~~e~~~a~~~-gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~--~ 159 (212)
T PRK00043 92 LPVA----DARALLGPDAIIGLSTHTLEEAAAALAA-GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA-----V--G 159 (212)
T ss_pred CCHH----HHHHHcCCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----c--C
Confidence 3322 2233345677778889999999999997 99999986433322121 24555565543 1 2
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
++++++.||| +++++..+.++|+++|.+|++|++.+||.+.+++|..
T Consensus 160 ~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 160 DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 4789999999 7999999999999999999999999999999998864
No 39
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.41 E-value=1.4e-11 Score=119.30 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCC---HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGS---FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs---~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.||.++|+.|.+.||..|+|..-.....|. ++.++.+++. +++||...+.|.+..++.++...||+.|.+..+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 499999999999999999999888877665 4555555665 789999999999999999999999999999998886
Q ss_pred hHH-HHHHHHHHHH----cCCcE----------EE----EcC--CHHHH-HHHhccCCCcEEeeccccC--cccccChhh
Q 015899 274 DLD-IRYMTKICKL----LGLTA----------LV----EVH--DEREM-DRVLGIEGIELIGINNRNL--ETFEVDNSN 329 (398)
Q Consensus 274 ~~~-L~~Li~~a~~----LGL~~----------LV----EVh--t~eEl-~rAl~l~Ga~iIGINnRdL--~tf~vDl~~ 329 (398)
+.+ ++++.+.+.+ +++++ ++ |.. +..|+ +++.++ |++-|-+++++- +--.+|++.
T Consensus 109 ~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~-g~~~ii~~~i~~~G~~~G~d~~~ 187 (258)
T PRK01033 109 DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEAL-GAGEILLNSIDRDGTMKGYDLEL 187 (258)
T ss_pred CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHc-CCCEEEEEccCCCCCcCCCCHHH
Confidence 543 6666665431 12221 11 111 23344 555565 888888885554 334568888
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHH-HcCCCEEEEcccccCC
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ-EAGVKAVLVGESIVKQ 381 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~-~~GadaVLVGeaLmk~ 381 (398)
..++.+. .++++|+.|||.+++|+..+. +.|++||++|++|.-.
T Consensus 188 i~~~~~~--------~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 188 LKSFRNA--------LKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHhh--------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 7777664 368999999999999999998 8999999999999987
No 40
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=99.39 E-value=1e-12 Score=125.52 Aligned_cols=186 Identities=24% Similarity=0.261 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCCcEEEEe----ccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccC--CHHHHHHHHHcCcCEEEE
Q 015899 199 PVEIARSYEKGGAACLSIL----TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIV--DAWQIYYARTKGADAVLL 267 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVL----Td~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIi--d~~QI~eAr~~GADaVLL 267 (398)
-.++|+..+++||.++..| .|-..-+| ++.-++.|..+ |++||..|--|= .+.||.|+ .|.|.|--
T Consensus 29 n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~a-VsIPVMAKvRIGH~~EA~iLea--lgVD~IDE 105 (296)
T COG0214 29 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDA-VSIPVMAKVRIGHFVEAQILEA--LGVDMIDE 105 (296)
T ss_pred CHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHh-cccceeeeeecchhHHHHHHHH--hCCCcccc
Confidence 3489999999999999887 34444544 77888888887 999999998774 45577776 89999765
Q ss_pred eccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEee------ccc-----------------------
Q 015899 268 IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI------NNR----------------------- 318 (398)
Q Consensus 268 iaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGI------NnR----------------------- 318 (398)
..+|++.|-..-++. +.+-....+-..|+-|+.|-+. +||.+|-+ .|-
T Consensus 106 -SEVLTPAD~~~Hi~K-~~FtVPFVcGarnLgEAlRRI~-EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~ed 182 (296)
T COG0214 106 -SEVLTPADEEFHINK-WKFTVPFVCGARNLGEALRRIS-EGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTED 182 (296)
T ss_pred -ccccCCCchhhhcch-hhcccceecCcCcHHHHHHHHh-hhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHH
Confidence 568888776655543 5678888888999999999988 59988833 211
Q ss_pred cCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 319 NLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 319 dL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
.+.+...++....+|+..+....- -.++-.+.|||.||.|+..++++|||||.||+.|+|+.||.+..+.++
T Consensus 183 el~~~Ak~~~~p~elv~~~~~~gr--LPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV 254 (296)
T COG0214 183 ELYVVAKELQAPYELVKEVAKLGR--LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIV 254 (296)
T ss_pred HHHHHHHHhCChHHHHHHHHHhCC--CCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHH
Confidence 111222334444555554332111 246788999999999999999999999999999999999998887765
No 41
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.39 E-value=2.1e-11 Score=112.65 Aligned_cols=162 Identities=21% Similarity=0.235 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
..+..+++++..++|+.+|-+-.... ...+.++.+++. ..-..+.-+-+++..++.++..+|||.|.+...
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~-~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~----- 85 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKE-FPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL----- 85 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHH-CCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC-----
Confidence 34677899999999999999853322 356677777764 321123445568899999999999999976432
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCC
Q 015899 276 DIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355 (398)
Q Consensus 276 ~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI 355 (398)
..++++.++.+|+..+++|.|.+|+.+|.++ |+++|++..... ...+....+... + .++++++.|||
T Consensus 86 -~~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~-Gad~i~~~p~~~----~g~~~~~~l~~~-----~--~~~p~~a~GGI 152 (190)
T cd00452 86 -DPEVVKAANRAGIPLLPGVATPTEIMQALEL-GADIVKLFPAEA----VGPAYIKALKGP-----F--PQVRFMPTGGV 152 (190)
T ss_pred -CHHHHHHHHHcCCcEECCcCCHHHHHHHHHC-CCCEEEEcCCcc----cCHHHHHHHHhh-----C--CCCeEEEeCCC
Confidence 3568888999999999999999999999997 999999854221 133333333322 1 25899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccC
Q 015899 356 FTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 356 ~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
|++++..+.++|+++|.+|+.+++
T Consensus 153 -~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 153 -SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred -CHHHHHHHHHCCCEEEEEchhcch
Confidence 999999999999999999999993
No 42
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.39 E-value=1.4e-11 Score=109.13 Aligned_cols=174 Identities=24% Similarity=0.251 Sum_probs=130.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH----HHHHHhcCCCCcEEeccccCCHHHHH-----HHHHcCcCEEEE
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIY-----YARTKGADAVLL 267 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~ed----L~~Ir~a~v~lPVL~KDFIid~~QI~-----eAr~~GADaVLL 267 (398)
.++.++++.+.++|+.++.+.+-...+.+.... +..++.. +++|++...++.++++.. .++.+|+|+|.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l 90 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence 478899999999999999998866666655433 6666765 789999999988888754 788999999999
Q ss_pred eccCCC-hHHHHHHHHHHHHc--CCcEEEEcCCHHHHHHH--hccCCCcEEeeccccCcccccChhhH-HHHhhhhcccc
Q 015899 268 IAAVLP-DLDIRYMTKICKLL--GLTALVEVHDEREMDRV--LGIEGIELIGINNRNLETFEVDNSNT-KKLLEGERGEI 341 (398)
Q Consensus 268 iaaiL~-~~~L~~Li~~a~~L--GL~~LVEVht~eEl~rA--l~l~Ga~iIGINnRdL~tf~vDl~~t-~~L~~~i~~~~ 341 (398)
...... ...+.++++..++. ++.+++.++...+...+ .+. |++.|.+.++...+...+.... ...+..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~--- 166 (200)
T cd04722 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEA-GVDEVGLGNGGGGGGGRDAVPIADLLLILAK--- 166 (200)
T ss_pred eccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHc-CCCEEEEcCCcCCCCCccCchhHHHHHHHHH---
Confidence 887653 23355566555554 99999999987776665 665 9999999988777665543210 11111110
Q ss_pred cccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 015899 342 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376 (398)
Q Consensus 342 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 376 (398)
...++++++.|||.+++++.++.++|+|+|.||+
T Consensus 167 -~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 167 -RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred -hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 0136789999999999999999999999999995
No 43
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=99.39 E-value=1.2e-12 Score=123.50 Aligned_cols=186 Identities=24% Similarity=0.303 Sum_probs=137.4
Q ss_pred HHHHHHHHHcCCcEEEEec----cCCcCCC-----CHHHHHHHHhcCCCCcEEecccc--CCHHHHHHHHHcCcCEEEEe
Q 015899 200 VEIARSYEKGGAACLSILT----DEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLT----d~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFI--id~~QI~eAr~~GADaVLLi 268 (398)
.++|+..+++||+++-+|. |-..-+| ++..++.|+++ |++||+.|--| +-+.||.|+ .|.|+|--
T Consensus 31 ~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~a-VsiPVMAk~RiGHFVEAQIlE~--l~vDYiDE- 106 (296)
T KOG1606|consen 31 AEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNA-VSIPVMAKVRIGHFVEAQILEA--LGVDYIDE- 106 (296)
T ss_pred HHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHh-ccchhhhhhhhhhhhHHHHHHH--hccCccch-
Confidence 4799999999999998874 3334444 78899999987 99999988655 356799888 78999765
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccc---------------------cCcccccC-
Q 015899 269 AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR---------------------NLETFEVD- 326 (398)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnR---------------------dL~tf~vD- 326 (398)
..+|++.+-...++. +......++-+.|+-|+.|-+. +|+-+|-+..- -++...-|
T Consensus 107 SEvlt~AD~~hhI~K-hnFkvPFvCG~rdlGEALRRI~-EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~de 184 (296)
T KOG1606|consen 107 SEVLTPADWDHHIEK-HNFKVPFVCGCRDLGEALRRIR-EGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDE 184 (296)
T ss_pred hhhcccccccchhhh-hcCcCceeeccccHHHHHHHHh-hchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 567877776667764 6788888999999999999998 59988855311 11111111
Q ss_pred -------hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 327 -------NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 327 -------l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.....|+..... +-.-.++-.+.||+.||.|+..++++|||||.||+.++++.||.+..+.++.
T Consensus 185 v~t~Ak~i~aP~dLv~~t~q--~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq 256 (296)
T KOG1606|consen 185 VFTFAKEIAAPYDLVKQTKQ--LGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ 256 (296)
T ss_pred HHHHHHHhcCcHHHHHHHHH--cCCCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHH
Confidence 1112223322111 0011356789999999999999999999999999999999999999887764
No 44
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.38 E-value=2.5e-11 Score=114.40 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=140.6
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcE-EeccccCCHHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL-LCKEFIVDAWQIYY 256 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPV-L~KDFIid~~QI~e 256 (398)
.+|+-+.-.++ .+..+++++..++|..+|=| |...- +..+.|+.+++. ..-|+ +-=.-++++.|+..
T Consensus 11 ~~~~v~r~~~~--------~~~~~~~~a~~~gGi~~iEv-t~~~~--~~~~~i~~l~~~-~~~~~~iGaGTV~~~~~~~~ 78 (206)
T PRK09140 11 PLIAILRGITP--------DEALAHVGALIEAGFRAIEI-PLNSP--DPFDSIAALVKA-LGDRALIGAGTVLSPEQVDR 78 (206)
T ss_pred CEEEEEeCCCH--------HHHHHHHHHHHHCCCCEEEE-eCCCc--cHHHHHHHHHHH-cCCCcEEeEEecCCHHHHHH
Confidence 45665544433 36788999999999999887 22221 455678888764 33343 33445789999999
Q ss_pred HHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhh
Q 015899 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~ 336 (398)
|+.+|||.+++-. . -.++.+.++..|+.++..|||.+|+..|.++ |+++|++-. +-...++....+...
T Consensus 79 a~~aGA~fivsp~--~----~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~-Gad~vk~Fp----a~~~G~~~l~~l~~~ 147 (206)
T PRK09140 79 LADAGGRLIVTPN--T----DPEVIRRAVALGMVVMPGVATPTEAFAALRA-GAQALKLFP----ASQLGPAGIKALRAV 147 (206)
T ss_pred HHHcCCCEEECCC--C----CHHHHHHHHHCCCcEEcccCCHHHHHHHHHc-CCCEEEECC----CCCCCHHHHHHHHhh
Confidence 9999999998843 2 2457778889999999999999999999997 999999822 223345555555443
Q ss_pred hcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC----CChHHHHHhhhc
Q 015899 337 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ----DDPGKGITGLFG 393 (398)
Q Consensus 337 i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~----~dp~~~i~~L~~ 393 (398)
+ +.++++++.||| +++++..+.++|+++|.||++|++. +++.+..+++..
T Consensus 148 -----~-~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 148 -----L-PPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVA 201 (206)
T ss_pred -----c-CCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHH
Confidence 1 225899999999 9999999999999999999999987 777777777643
No 45
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.37 E-value=1.8e-11 Score=116.30 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH--cCcCEEEEeccCCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART--KGADAVLLIAAVLP 273 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~--~GADaVLLiaaiL~ 273 (398)
..||.++|+.|.+.||+.|+|.+..... |...|+..|++..-.+|+.....|.+..++..+.. .|||.|.+++..++
T Consensus 35 ~~dP~~~a~~~~~~g~~~l~ivDLd~~~-~~~~n~~~i~~i~~~~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~ 113 (221)
T TIGR00734 35 SSSPDDAAKVIEEIGARFIYIADLDRIV-GLGDNFSLLSKLSKRVELIADCGVRSPEDLETLPFTLEFASRVVVATETLD 113 (221)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEccccc-CCcchHHHHHHHHhhCcEEEcCccCCHHHHHHHHhhhccceEEeecChhhC
Confidence 4699999999999999999999998875 77666665544211359988889999998887743 37999999998886
Q ss_pred hHH-HHHHHHHHHHcCCcEE---EEcC----CHHHHHHHhccCCCcEEeec-cccCcccccChhhHHHHhhhhccccccc
Q 015899 274 DLD-IRYMTKICKLLGLTAL---VEVH----DEREMDRVLGIEGIELIGIN-NRNLETFEVDNSNTKKLLEGERGEIIRQ 344 (398)
Q Consensus 274 ~~~-L~~Li~~a~~LGL~~L---VEVh----t~eEl~rAl~l~Ga~iIGIN-nRdL~tf~vDl~~t~~L~~~i~~~~i~~ 344 (398)
+.+ ++++. .-+++++- +-++ +..++...+...|+.+|=.+ .++-+.-.+|++...++.+.
T Consensus 114 ~p~~l~~~~---~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~-------- 182 (221)
T TIGR00734 114 ITELLRECY---TVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLEL-------- 182 (221)
T ss_pred CHHHHHHhh---hEEEEEeECCccccccccccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhh--------
Confidence 544 55443 34555541 1111 34444333322255554433 45555567889888888775
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.+++++++|||.+++|+.++.++|+++|+||++|+..
T Consensus 183 ~~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 183 SEHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 3578999999999999999999999999999999875
No 46
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.35 E-value=6.7e-11 Score=114.04 Aligned_cols=178 Identities=17% Similarity=0.070 Sum_probs=134.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH---HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL---~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||.+.|+.|.+.|+..++|......+ |...|. +.+.+. +.+||.....|.+..++..+...|||.|.+.+..+
T Consensus 30 y~~p~~~a~~~~~~g~~~lhivDLd~a~-g~~~n~~~i~~i~~~-~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 30 YGSLESAAKWWEQGGAEWIHLVDLDAAF-GGGNNEMMLEEVVKL-LVVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred cCCHHHHHHHHHhCCCeEEEEEECCCCC-CCcchHHHHHHHHHH-CCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3499999999999999999999998887 655444 455554 67999999999999999999999999999999888
Q ss_pred ChHH-HHHHHHHHHH---cCCcEE-------------EEcC-CHHHH-HHHhccCCCcEEeec--cccCcccccChhhHH
Q 015899 273 PDLD-IRYMTKICKL---LGLTAL-------------VEVH-DEREM-DRVLGIEGIELIGIN--NRNLETFEVDNSNTK 331 (398)
Q Consensus 273 ~~~~-L~~Li~~a~~---LGL~~L-------------VEVh-t~eEl-~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~ 331 (398)
++.+ ++++.+...+ +++++. .|.. ++.|+ ++..+. |+.-|=+| +||-+--.+|++...
T Consensus 108 ~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~-g~~~ii~tdI~~dGt~~G~d~~l~~ 186 (243)
T TIGR01919 108 ENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSG-GCSRVVVTDSKKDGLSGGPNELLLE 186 (243)
T ss_pred CCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhC-CCCEEEEEecCCcccCCCcCHHHHH
Confidence 6544 6666655432 344432 2211 23333 444444 66544444 566666788999888
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHH---cCCCEEEEcccccCCCCh
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE---AGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~---~GadaVLVGeaLmk~~dp 384 (398)
++... .++++|+.||+.+.+|+.++.+ +|++||+||++|+...-.
T Consensus 187 ~l~~~--------~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~ 234 (243)
T TIGR01919 187 VVAAR--------TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFT 234 (243)
T ss_pred HHHhh--------CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCC
Confidence 88764 3689999999999999999864 599999999999987744
No 47
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.34 E-value=4e-11 Score=110.04 Aligned_cols=171 Identities=21% Similarity=0.229 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHH---HH---HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE---NL---EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~e---dL---~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
+..+..+...++|+++|.+ .++.. ...+ .+ ..+++. .+.|++..|+ +..|...|+|+|.|....
T Consensus 14 ~~~~~~~~~~~~g~~~v~l-R~~~~--~~~~~~~~~~~l~~~~~~-~~~~l~i~~~------~~la~~~g~~GvHl~~~~ 83 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQL-RDKGS--NTRERLALAEKLQELCRR-YGVPFIVNDR------VDLALALGADGVHLGQDD 83 (196)
T ss_pred cHHHHHHHHHhcCCCEEEE-ecCCC--CHHHHHHHHHHHHHHHHH-hCCeEEEECH------HHHHHHcCCCEEecCccc
Confidence 3556666677788998854 33321 1112 22 222222 3678887764 456788999999997655
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc------cChhhHHHHhhhhcccccccC
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE------VDNSNTKKLLEGERGEIIRQK 345 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~------vDl~~t~~L~~~i~~~~i~~~ 345 (398)
++....+.++ ..+..+-+.|||.+|+.++.++ |+++|++.+.--+.-+ .+++...++.+. . .
T Consensus 84 ~~~~~~r~~~----~~~~~ig~s~h~~~e~~~a~~~-g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~-----~--~ 151 (196)
T TIGR00693 84 LPASEARALL----GPDKIIGVSTHNLEELAEAEAE-GADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT-----S--I 151 (196)
T ss_pred CCHHHHHHhc----CCCCEEEEeCCCHHHHHHHhHc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-----c--C
Confidence 5543333332 3456778899999999999997 9999998654222221 244555555432 1 2
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
++++++.||| +++++..+.++|+++|.+|++|++++||...+++|
T Consensus 152 ~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 152 DIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 4789999999 69999999999999999999999999999998865
No 48
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.34 E-value=1.1e-10 Score=105.08 Aligned_cols=172 Identities=26% Similarity=0.261 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHH----HHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~e----dL~~Ir~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
.+..+..+...++|+++|.+= +. .+++. .+..+++. ..+++++..|+ +..+..+|||+|.+-..
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr-~~---~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~------~~~a~~~g~~~vh~~~~ 81 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLR-EK---DLSARELLELARALRELCRKYGVPLIINDR------VDLALAVGADGVHLGQD 81 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEe-CC---CCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCCEEecCcc
Confidence 467788888888899999763 22 23332 23334332 13577776552 45578899999988765
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc------cccChhhHHHHhhhhccccccc
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET------FEVDNSNTKKLLEGERGEIIRQ 344 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t------f~vDl~~t~~L~~~i~~~~i~~ 344 (398)
.+....+. ..+..++.+-+.+||.+|+.++... |+++|.+....-+. ...+++...++.+.
T Consensus 82 ~~~~~~~~----~~~~~~~~~g~~~~t~~~~~~~~~~-g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 148 (196)
T cd00564 82 DLPVAEAR----ALLGPDLIIGVSTHSLEEALRAEEL-GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-------- 148 (196)
T ss_pred cCCHHHHH----HHcCCCCEEEeeCCCHHHHHHHhhc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--------
Confidence 44333232 3345677888889999999999997 99999987543221 12234444444332
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
.++++++.||| +++++..+.++|+++|.+|++|++.+||.+.+++|.
T Consensus 149 ~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 149 VEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 35789999999 589999999999999999999999999999998874
No 49
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.33 E-value=8.1e-11 Score=112.40 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.||.++|+.|.+. |..|+++.-.....| +++-++.+++. +++||.....|.+..++..+...|||.|.+..+.++
T Consensus 30 ~dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 30 GDPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CCHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 3899999999998 999999888878888 45666666665 899999999999999999999999999999988886
Q ss_pred hHHHHHHHHHHHH--cCCcE---------EEEcC--CHHHHHHHhccCCCcEEeec--cccCcccccChhhHHHHhhhhc
Q 015899 274 DLDIRYMTKICKL--LGLTA---------LVEVH--DEREMDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLLEGER 338 (398)
Q Consensus 274 ~~~L~~Li~~a~~--LGL~~---------LVEVh--t~eEl~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~~~i~ 338 (398)
++.++++.+.+.+ +++++ |.|.. +..|+-..++- .+.-|=+| +|+-+--.+| +|.+.
T Consensus 108 ~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~-~~~~ii~t~i~~dGt~~G~d-----~l~~~-- 179 (228)
T PRK04128 108 LEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKN-YVNRFIYTSIERDGTLTGIE-----EIERF-- 179 (228)
T ss_pred HHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHH-HhCEEEEEeccchhcccCHH-----HHHHh--
Confidence 5556666654422 23332 22322 23333222221 12222233 3333322333 44432
Q ss_pred ccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHH
Q 015899 339 GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 388 (398)
Q Consensus 339 ~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i 388 (398)
+ .++++++.|||.+.+|+.++.+.|++||+||++|+...-+...+
T Consensus 180 ---~--~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~~~~~~~ 224 (228)
T PRK04128 180 ---W--GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGRISLEEL 224 (228)
T ss_pred ---c--CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCCcCHHHH
Confidence 1 25789999999999999999999999999999999987665544
No 50
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.28 E-value=5e-10 Score=103.17 Aligned_cols=183 Identities=20% Similarity=0.221 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHcCCcEEEEe-ccCCcCCC---CHHHHHHHHhcCCCCcEE----eccccCCHHHHHHHHHcCcCEEEEec
Q 015899 198 DPVEIARSYEKGGAACLSIL-TDEKYFKG---SFENLEAVRSAGVKCPLL----CKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-Td~~~F~G---s~edL~~Ir~a~v~lPVL----~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
...+.++...++||+.|++. .|..|+++ +++.++.+|+. ++.|+. ..| +...+..+..+|||.|.+-.
T Consensus 12 ~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~-~~~~v~v~lm~~~---~~~~~~~~~~~gadgv~vh~ 87 (210)
T TIGR01163 12 RLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKY-TDLPIDVHLMVEN---PDRYIEDFAEAGADIITVHP 87 (210)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHHHHHcCCCEEEEcc
Confidence 46788999999999999996 55555555 56778888875 678853 233 23457788899999988854
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEE--EcCCHHHHHHHhccCCCcEEeeccccC----cccccC-hhhHHHHhhhhccccc
Q 015899 270 AVLPDLDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNL----ETFEVD-NSNTKKLLEGERGEII 342 (398)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~~LV--EVht~eEl~rAl~l~Ga~iIGINnRdL----~tf~vD-l~~t~~L~~~i~~~~i 342 (398)
.. .++....++.++.+|+...+ +.|+..|..+.+.. +++.|.+-..+. .++... ++...++.+.+. + .
T Consensus 88 ~~--~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~-~-~ 162 (210)
T TIGR01163 88 EA--SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP-DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID-E-N 162 (210)
T ss_pred CC--chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh-hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH-h-c
Confidence 32 34567777888888887644 46776666666653 678776633321 112111 122222222210 0 0
Q ss_pred ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 343 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 343 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
..++++++.||| +++++..+.+.|+|+++||++|+.++||.+++++|
T Consensus 163 -~~~~~i~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 163 -GLSILIEVDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred -CCCceEEEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 013568889999 58999999999999999999999999999999876
No 51
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.24 E-value=2.3e-10 Score=110.41 Aligned_cols=180 Identities=23% Similarity=0.257 Sum_probs=124.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcC--CCCHHHHHHHHhcCCCCcEE---eccccCCH-H-HHHHHHHc-CcCEEEE
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLL---CKEFIVDA-W-QIYYARTK-GADAVLL 267 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F--~Gs~edL~~Ir~a~v~lPVL---~KDFIid~-~-QI~eAr~~-GADaVLL 267 (398)
.-++..+.++....|+..+-|-.-..-+ .+....+..++.. .+-+| ..-+--.+ . -...||++ |-|-|=|
T Consensus 19 y~s~~~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~--~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKl 96 (248)
T cd04728 19 YPSPAIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKS--GYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKL 96 (248)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcccc--CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 4588899999999999988876544332 3445555566532 33344 11110111 0 11224444 7787766
Q ss_pred eccCCCh-----HHHHHHHHHHHHc---CCcEE-EEcCCHHHHHHHhccCCCcEEee------ccccCcccccChhhHHH
Q 015899 268 IAAVLPD-----LDIRYMTKICKLL---GLTAL-VEVHDEREMDRVLGIEGIELIGI------NNRNLETFEVDNSNTKK 332 (398)
Q Consensus 268 iaaiL~~-----~~L~~Li~~a~~L---GL~~L-VEVht~eEl~rAl~l~Ga~iIGI------NnRdL~tf~vDl~~t~~ 332 (398)
=+ ++| .|+.+.++.|+.| |+.+| ++..|..+..+..++ |++.|-. .++.+. +.+....
T Consensus 97 EV--i~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G~~~vmPlg~pIGsg~Gi~----~~~~I~~ 169 (248)
T cd04728 97 EV--IGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGQGLL----NPYNLRI 169 (248)
T ss_pred EE--ecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCCCCCC----CHHHHHH
Confidence 32 321 3588999999999 99999 999999999999998 8876633 123332 2444444
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.+. .+++||+++||+||+|+.+++++|||||+||++|++++||....+.+.
T Consensus 170 I~e~--------~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~ 221 (248)
T cd04728 170 IIER--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFK 221 (248)
T ss_pred HHHh--------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHH
Confidence 4432 368999999999999999999999999999999999999987766653
No 52
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.23 E-value=3.2e-10 Score=110.25 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=127.2
Q ss_pred CCH-HHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC--
Q 015899 197 FDP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP-- 273 (398)
Q Consensus 197 ~dp-~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~-- 273 (398)
.|| .++|+.|++.||..|||++. -..+.+-+..|.+. +++||.....|.+ .++.....+|||.|.+...+++
T Consensus 37 ~~pp~~~A~~~~~~Ga~~lHvVDL---g~~n~~~i~~i~~~-~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 37 DKPSSYYAKLYKDDGVKGCHVIML---GPNNDDAAKEALHA-YPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEC---CCCcHHHHHHHHHh-CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 356 99999999999999999998 11255556666665 7899999999986 9999999999999999998875
Q ss_pred ---hHHHHHHHHHHH----HcCCcEE--------------EEcC--CHH-HHHHHhccCCCcEEeec--cccCcccccCh
Q 015899 274 ---DLDIRYMTKICK----LLGLTAL--------------VEVH--DER-EMDRVLGIEGIELIGIN--NRNLETFEVDN 327 (398)
Q Consensus 274 ---~~~L~~Li~~a~----~LGL~~L--------------VEVh--t~e-El~rAl~l~Ga~iIGIN--nRdL~tf~vDl 327 (398)
++.++++.+... .+++++. .|.+ +.. |+...++- .+.-|=+| +||-+--.+|+
T Consensus 112 ~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~-~~~~il~TdI~rDGtl~G~dl 190 (253)
T TIGR02129 112 KFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSK-YCDEFLIHAADVEGLCKGIDE 190 (253)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHh-hCCEEEEeeecccCccccCCH
Confidence 456777777662 1455543 2222 222 43333332 24333334 67777778999
Q ss_pred hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc--CCCEEEEcccccC
Q 015899 328 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA--GVKAVLVGESIVK 380 (398)
Q Consensus 328 ~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~--GadaVLVGeaLmk 380 (398)
+.+.++.+. .++++||.||+.+.+|+.++.+. |..++++|.||+.
T Consensus 191 el~~~l~~~--------~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 191 ELVSKLGEW--------SPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHhh--------CCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999875 46899999999999999999776 6788999999864
No 53
>PLN02591 tryptophan synthase
Probab=99.20 E-value=1.5e-09 Score=105.45 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=102.5
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--- 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh--- 296 (398)
-++.++.+|+. .++|++.--+.-+-|+ +.+++++|+|+|++- -|+.++..++.+.|+++||+.+.-|.
T Consensus 66 ~~~~~~~~r~~-~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt 142 (250)
T PLN02591 66 VISMLKEVAPQ-LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--DLPLEETEALRAEAAKNGIELVLLTTPTT 142 (250)
T ss_pred HHHHHHHHhcC-CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 46778888875 7899664444333333 678899999999884 57888899999999999999988882
Q ss_pred CHHHHHHHhccC-CC-cEEeeccccCc--ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 297 DEREMDRVLGIE-GI-ELIGINNRNLE--TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 297 t~eEl~rAl~l~-Ga-~iIGINnRdL~--tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
+.+.+.++.+.. |+ .+|+.+...-. .+..++....+.++. . .+++++...||+|++|++++.++|||||
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-----~--~~~Pv~vGFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE-----V--TDKPVAVGFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-----c--CCCceEEeCCCCCHHHHHHHHhcCCCEE
Confidence 344466666542 32 24443322211 223334443333332 1 4678889999999999999999999999
Q ss_pred EEcccccC
Q 015899 373 LVGESIVK 380 (398)
Q Consensus 373 LVGeaLmk 380 (398)
+||++|++
T Consensus 216 IVGSalVk 223 (250)
T PLN02591 216 IVGSAMVK 223 (250)
T ss_pred EECHHHHH
Confidence 99999987
No 54
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.20 E-value=5.4e-10 Score=108.02 Aligned_cols=179 Identities=21% Similarity=0.219 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCc-CCCCHHHHHHHHhcCCCCcEE---eccccCCHH--HHHHHHH-cCcCEEEEe
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKY-FKGSFENLEAVRSAGVKCPLL---CKEFIVDAW--QIYYART-KGADAVLLI 268 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~-F~Gs~edL~~Ir~a~v~lPVL---~KDFIid~~--QI~eAr~-~GADaVLLi 268 (398)
.-++..+.++.+..|+..+-|-.-..- .++....+..|.. ..+.+| ..-+--++. --..||+ .|-|-|=|=
T Consensus 20 y~s~~~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlE 97 (250)
T PRK00208 20 YPSPQVMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLE 97 (250)
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 458889999999999998887652211 1234445555643 234444 111111110 1112444 366777663
Q ss_pred ccCCC-----hHHHHHHHHHHHHc---CCcEE-EEcCCHHHHHHHhccCCCcEE-------eeccccCcccccChhhHHH
Q 015899 269 AAVLP-----DLDIRYMTKICKLL---GLTAL-VEVHDEREMDRVLGIEGIELI-------GINNRNLETFEVDNSNTKK 332 (398)
Q Consensus 269 aaiL~-----~~~L~~Li~~a~~L---GL~~L-VEVht~eEl~rAl~l~Ga~iI-------GINnRdL~tf~vDl~~t~~ 332 (398)
+ ++ -.|+.+.++.|+.| |+.+| ++..|..+..+..++ |+++| |.| +.+.+ .+....
T Consensus 98 V--i~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G~~~vmPlg~pIGsg-~gi~~----~~~i~~ 169 (250)
T PRK00208 98 V--IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-GCAAVMPLGAPIGSG-LGLLN----PYNLRI 169 (250)
T ss_pred E--ecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-CCCEeCCCCcCCCCC-CCCCC----HHHHHH
Confidence 2 32 23689999999999 99999 999999999999998 88765 433 44333 333344
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.+. .+++||+++||+||+|+.+++++|||||+||++|++++||..-.+.+.
T Consensus 170 i~e~--------~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~ 221 (250)
T PRK00208 170 IIEQ--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFK 221 (250)
T ss_pred HHHh--------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHH
Confidence 4332 368999999999999999999999999999999999999987666553
No 55
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.19 E-value=1.6e-09 Score=100.91 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHcCCcEEEEec-cCCcCCC---CHHHHHHHHhcCCCCc----EEeccccCCHHHHHHHHHcCcCEEEEe
Q 015899 197 FDPVEIARSYEKGGAACLSILT-DEKYFKG---SFENLEAVRSAGVKCP----LLCKEFIVDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLT-d~~~F~G---s~edL~~Ir~a~v~lP----VL~KDFIid~~QI~eAr~~GADaVLLi 268 (398)
....+.++...++|+++|++=. |..|.+. .++.++.+++. ++.| ++..| ....+..+..+|+|.|.+-
T Consensus 16 ~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~v~d---~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 16 ARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKV-TKLPLDVHLMVEN---PDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhc-CCCcEEEEeeeCC---HHHHHHHHHHcCCCEEEEe
Confidence 3556778999999999999932 2233333 57888888864 4433 23333 1234667789999997775
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEc--CCHHHHHHHhccCCCcEEeeccccCcccc--cC---hhhHHHHhhhhcccc
Q 015899 269 AAVLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGINNRNLETFE--VD---NSNTKKLLEGERGEI 341 (398)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~~LVEV--ht~eEl~rAl~l~Ga~iIGINnRdL~tf~--vD---l~~t~~L~~~i~~~~ 341 (398)
... .++....++.++..|+.+.+-+ ||..|..+.+.. +++.|++-.....+-. .+ ++...++.+.
T Consensus 92 ~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~----- 163 (220)
T PRK05581 92 VEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKL----- 163 (220)
T ss_pred ecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHH-----
Confidence 543 3456777888899999987777 455555554542 5677766543221111 12 1222222221
Q ss_pred cccC--CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 342 IRQK--NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 342 i~~~--~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.... +..+...|||+. +++..+.++|+|+|+||++|++.+||.+++++|..
T Consensus 164 ~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 164 IDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred HHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 1000 234557799955 89999999999999999999999999999988864
No 56
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.19 E-value=2.1e-09 Score=102.09 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCCC----HHHHHHHHhcCCCCcEEeccccC-CH-HHHHHHHH
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIV-DA-WQIYYART 259 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs----~edL~~Ir~a~v~lPVL~KDFIi-d~-~QI~eAr~ 259 (398)
+|| .+..+ .+..+..+...++|++.|++=--...|..+ ++.++.+|+. ++.|+- -++++ +| .-+..+..
T Consensus 11 ~~s--~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~-~~~~~~-vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 11 APS--ILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKH-TDAPLD-CHLMVTNPEDYVPDFAK 86 (229)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhc-CCCcEE-EEeccCCHHHHHHHHHH
Confidence 466 34334 467788899999999999995444444432 3578888875 666653 33444 23 33677789
Q ss_pred cCcCEEEEeccC-CChHHHHHHHHHHHHcCCcEEEEcC--CHHH-HHHHhccCC-CcEEeeccccCcccccC-----hhh
Q 015899 260 KGADAVLLIAAV-LPDLDIRYMTKICKLLGLTALVEVH--DERE-MDRVLGIEG-IELIGINNRNLETFEVD-----NSN 329 (398)
Q Consensus 260 ~GADaVLLiaai-L~~~~L~~Li~~a~~LGL~~LVEVh--t~eE-l~rAl~l~G-a~iIGINnRdL~tf~vD-----l~~ 329 (398)
+|||.|.+-... -+ +...+.++.++..|+.+-+-+| |..| ++..+.. | +++|++-.-.-++-..+ ++.
T Consensus 87 ~gad~v~vH~~q~~~-d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~-~~~Dyi~~~~v~pg~~~~~~~~~~~~~ 164 (229)
T PLN02334 87 AGASIFTFHIEQAST-IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEK-GLVDMVLVMSVEPGFGGQSFIPSMMDK 164 (229)
T ss_pred cCCCEEEEeeccccc-hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhc-cCCCEEEEEEEecCCCccccCHHHHHH
Confidence 999999554431 22 3567788888888988888887 5444 4444442 3 89996643322111111 222
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
..++.+. + .++++++-||| |++++..+.++|+|++.||++|++.+||.+++++|..
T Consensus 165 i~~~~~~-----~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~ 220 (229)
T PLN02334 165 VRALRKK-----Y--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRA 220 (229)
T ss_pred HHHHHHh-----C--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHH
Confidence 3333222 1 24678899999 8999999999999999999999999999999998864
No 57
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.18 E-value=2.1e-09 Score=99.78 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=126.2
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE--eccccCCHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIY 255 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL--~KDFIid~~QI~ 255 (398)
.+|+-+.-.+| .+..+++++..++|+.+|-+ |+... +..+.+..+++. .|.+ .-..++..-|+.
T Consensus 13 ~~~~v~r~~~~--------~~~~~~~~~~~~~Gv~~vql-r~k~~--~~~e~~~~~~~~---~~~~~~g~gtvl~~d~~~ 78 (187)
T PRK07455 13 RAIAVIRAPDL--------ELGLQMAEAVAAGGMRLIEI-TWNSD--QPAELISQLREK---LPECIIGTGTILTLEDLE 78 (187)
T ss_pred CEEEEEEcCCH--------HHHHHHHHHHHHCCCCEEEE-eCCCC--CHHHHHHHHHHh---CCCcEEeEEEEEcHHHHH
Confidence 46666644433 36778899999999999987 33322 345667777764 2443 233455668999
Q ss_pred HHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc-cChhhHHHHh
Q 015899 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE-VDNSNTKKLL 334 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~-vDl~~t~~L~ 334 (398)
.|.++|||.|++.. ++. +..+.++..++..+.-|||.+|+.+|.+. |+++|++ +-|-. ..++....+.
T Consensus 79 ~A~~~gAdgv~~p~--~~~----~~~~~~~~~~~~~i~G~~t~~e~~~A~~~-Gadyv~~----Fpt~~~~G~~~l~~~~ 147 (187)
T PRK07455 79 EAIAAGAQFCFTPH--VDP----ELIEAAVAQDIPIIPGALTPTEIVTAWQA-GASCVKV----FPVQAVGGADYIKSLQ 147 (187)
T ss_pred HHHHcCCCEEECCC--CCH----HHHHHHHHcCCCEEcCcCCHHHHHHHHHC-CCCEEEE----CcCCcccCHHHHHHHH
Confidence 99999999998866 443 34556778888888899999999999997 9999999 22321 1344545554
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.. + .++++++-||| |++++..+.++|+++|-||++|++.
T Consensus 148 ~~-----~--~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 148 GP-----L--GHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred hh-----C--CCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcccC
Confidence 42 1 25889999999 9999999999999999999999875
No 58
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.18 E-value=4.4e-10 Score=106.64 Aligned_cols=172 Identities=24% Similarity=0.301 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCC----HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs----~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
........++|+.++-.- ++.-..-. -..++.+++. -++|++-.|. +..|.+.|||+|.|...-++..
T Consensus 24 ~~~ve~al~~Gv~~vQlR-~K~~~~~~~~~~a~~~~~lc~~-~~v~liINd~------~dlA~~~~AdGVHlGq~D~~~~ 95 (211)
T COG0352 24 LEWVEAALKGGVTAVQLR-EKDLSDEEYLALAEKLRALCQK-YGVPLIINDR------VDLALAVGADGVHLGQDDMPLA 95 (211)
T ss_pred HHHHHHHHhCCCeEEEEe-cCCCChHHHHHHHHHHHHHHHH-hCCeEEecCc------HHHHHhCCCCEEEcCCcccchH
Confidence 567777888898876653 22211111 1223333443 4778776664 5557789999999999877665
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccC-----hhhHHHHhhhhcccccccCCceEE
Q 015899 276 DIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVD-----NSNTKKLLEGERGEIIRQKNIIVV 350 (398)
Q Consensus 276 ~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vD-----l~~t~~L~~~i~~~~i~~~~v~vV 350 (398)
+..+++..-.-+|+. +||.+|+.+|.++ |+++||+..---+.-+.| ++....+... ..+++|
T Consensus 96 ~ar~~~~~~~iIG~S----~h~~eea~~A~~~-g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~--------~~iP~v 162 (211)
T COG0352 96 EARELLGPGLIIGLS----THDLEEALEAEEL-GADYVGLGPIFPTSTKPDAPPLGLEGLREIREL--------VNIPVV 162 (211)
T ss_pred HHHHhcCCCCEEEee----cCCHHHHHHHHhc-CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh--------CCCCEE
Confidence 555555443346666 9999999999997 999999985433332233 3333333222 237899
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 351 AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.||| +++.+..+.+.|+++|-|-++||...||.++.++|..
T Consensus 163 AIGGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~ 204 (211)
T COG0352 163 AIGGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204 (211)
T ss_pred EEcCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999875
No 59
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.18 E-value=1.9e-09 Score=114.76 Aligned_cols=190 Identities=21% Similarity=0.171 Sum_probs=142.6
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH------HHHHHHHhcCCCCcEEeccccCCH-----------HH
Q 015899 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSF------ENLEAVRSAGVKCPLLCKEFIVDA-----------WQ 253 (398)
Q Consensus 191 G~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~------edL~~Ir~a~v~lPVL~KDFIid~-----------~Q 253 (398)
+.++.--||+++|+.|.+.||+.|++++-..++.|.. +-++.+.+. +.+|+-....|.+. .+
T Consensus 261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHH
Confidence 4477788999999999999999999999998776544 345566665 89999999999886 67
Q ss_pred HHHHHHcCcCEEEEeccCCCh-------------HHHHHHHHHHHHcCCc-EEE--EcC---------------------
Q 015899 254 IYYARTKGADAVLLIAAVLPD-------------LDIRYMTKICKLLGLT-ALV--EVH--------------------- 296 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~-------------~~L~~Li~~a~~LGL~-~LV--EVh--------------------- 296 (398)
+.....+|||.|.+.+.++.+ +-++++.+ ..|=+ ++| ++.
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~---~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR---VYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHH---HcCCceEEEEEecCcCcccCccccccccccccccC
Confidence 888899999999999987764 23444444 34433 222 211
Q ss_pred ----------------------C-HHHHHHHhccCCCcEEeec--cccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 297 ----------------------D-EREMDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 297 ----------------------t-~eEl~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
+ .+-++++.++ |+.-|=+| .||-+--..|++.+.++... .++++||
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~-Gageil~t~id~DGt~~G~d~~l~~~v~~~--------~~ipvia 487 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEEL-GAGEILLNCIDCDGQGKGFDIELVKLVSDA--------VTIPVIA 487 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHhc-CCCEEEEeeccccccccCcCHHHHHHHHhh--------CCCCEEE
Confidence 1 1224555565 77655555 55666677889888888765 3689999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 352 ESGLFTPDDIAYVQE-AGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 352 ESGI~t~eD~~~l~~-~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.||+.+++|+..+.. .|++|++.|+-+.....+...+++.+.
T Consensus 488 sGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 488 SSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred ECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 999999999999987 679999999999988777777766553
No 60
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.12 E-value=5.5e-10 Score=113.01 Aligned_cols=171 Identities=19% Similarity=0.194 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCH-------HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF-------ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~-------edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+..++.....++|+.+|-.- ++ ..+. ..|..+.+. .+.+++-.|+ +.-|...|||+|.|...
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR-~K---~~~~~~~~~~a~~L~~l~~~-~~~~lIIND~------vdlAl~~~aDGVHLgq~ 226 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYR-DK---TADDRQRLEEAKKLKELCHR-YGALFIVNDR------VDIALAVDADGVHLGQE 226 (347)
T ss_pred hHHHHHHHHHHcCCCEEEEC-CC---CCCHHHHHHHHHHHHHHHHH-hCCeEEEeCh------HHHHHHcCCCEEEeChh
Confidence 46677777888898887762 22 2222 223333333 3567766664 55688899999999876
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc-----cChhhHHHHhhhhcccccccC
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE-----VDNSNTKKLLEGERGEIIRQK 345 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~-----vDl~~t~~L~~~i~~~~i~~~ 345 (398)
.++..+...++. .+.-+-+-+||.+|+..|... |+++||+...--++-+ ..++....+... .
T Consensus 227 dl~~~~aR~llg----~~~iIG~S~Hs~~e~~~A~~~-GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~--------~ 293 (347)
T PRK02615 227 DLPLAVARQLLG----PEKIIGRSTTNPEEMAKAIAE-GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE--------A 293 (347)
T ss_pred hcCHHHHHHhcC----CCCEEEEecCCHHHHHHHHHc-CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh--------C
Confidence 655433322211 233445668999999999997 9999998744332222 234444554432 3
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.+++++.||| +++++..+..+|+++|.|+++||..+||.+.+++|..
T Consensus 294 ~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~ 340 (347)
T PRK02615 294 PIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLK 340 (347)
T ss_pred CCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHH
Confidence 5789999999 6999999999999999999999999999999998865
No 61
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.11 E-value=8.7e-09 Score=94.69 Aligned_cols=187 Identities=20% Similarity=0.213 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEe-ccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHHcCcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSIL-TDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVL-Td~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~-~QI~eAr~~GADaVLLiaai 271 (398)
.+..+.++...++|+++|.+= -|..|... +++.++.+|+. ++.|+...=++-|+ ..+..+..+|+|.|.+-...
T Consensus 12 ~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~-~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~ 90 (211)
T cd00429 12 ANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH-TDLPLDVHLMVENPERYIEAFAKAGADIITFHAEA 90 (211)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh-CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccc
Confidence 345567888999999999982 22222222 35778888875 44554322122222 23777889999998775432
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCC--HHHHHHHhccCCCcEEeeccccCccc--ccChh---hHHHHhhhhccccccc
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHD--EREMDRVLGIEGIELIGINNRNLETF--EVDNS---NTKKLLEGERGEIIRQ 344 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht--~eEl~rAl~l~Ga~iIGINnRdL~tf--~vDl~---~t~~L~~~i~~~~i~~ 344 (398)
.++..+.++.++..|+.+.+.+++ ..+..+.... ++++|++-.....+- ..+.. ...++.+... .. .
T Consensus 91 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~-~~--~ 164 (211)
T cd00429 91 --TDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLD-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIP-EN--N 164 (211)
T ss_pred --hhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHh-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHH-hc--C
Confidence 245667788889999999888863 3333333332 467775543322211 12211 2222222110 00 1
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
.++++++.|||+ ++++..+.+.|+|+|+||++|++.+||.+.++++
T Consensus 165 ~~~pi~v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 165 LNLLIEVDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred CCeEEEEECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 136788999996 6999999999999999999999999999999876
No 62
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.10 E-value=5.3e-09 Score=99.31 Aligned_cols=184 Identities=22% Similarity=0.245 Sum_probs=139.0
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCC-Cc--EEeccccCCHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK-CP--LLCKEFIVDAWQI 254 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~-lP--VL~KDFIid~~QI 254 (398)
.||+=+.-.+ ..+...+++++.++|..++=| |.. -.+.++.++.+++. .. -| ++-=.-++++.|+
T Consensus 14 ~vi~vir~~~--------~~~a~~~~~al~~~Gi~~iEi-t~~--~~~a~~~i~~l~~~-~~~~p~~~vGaGTV~~~~~~ 81 (213)
T PRK06552 14 GVVAVVRGES--------KEEALKISLAVIKGGIKAIEV-TYT--NPFASEVIKELVEL-YKDDPEVLIGAGTVLDAVTA 81 (213)
T ss_pred CEEEEEECCC--------HHHHHHHHHHHHHCCCCEEEE-ECC--CccHHHHHHHHHHH-cCCCCCeEEeeeeCCCHHHH
Confidence 4566554333 346788999999999998887 322 23567788888764 32 13 4556678999999
Q ss_pred HHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
..|..+||+-++ +-.++ .+++++|++.|+..+--|+|+.|+..|.+. |+++|++-..+ . ..++....|.
T Consensus 82 ~~a~~aGA~Fiv--sP~~~----~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~-Gad~vklFPa~--~--~G~~~ik~l~ 150 (213)
T PRK06552 82 RLAILAGAQFIV--SPSFN----RETAKICNLYQIPYLPGCMTVTEIVTALEA-GSEIVKLFPGS--T--LGPSFIKAIK 150 (213)
T ss_pred HHHHHcCCCEEE--CCCCC----HHHHHHHHHcCCCEECCcCCHHHHHHHHHc-CCCEEEECCcc--c--CCHHHHHHHh
Confidence 999999999976 33343 568888999999999999999999999997 99999983322 1 2244444443
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC------CChHHHHHhhh
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ------DDPGKGITGLF 392 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~------~dp~~~i~~L~ 392 (398)
.. + .++++++-||| +++++..+.++|++++-+|++|+.. .++.+..+++.
T Consensus 151 ~~-----~--p~ip~~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~ 206 (213)
T PRK06552 151 GP-----L--PQVNVMVTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYM 206 (213)
T ss_pred hh-----C--CCCEEEEECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHH
Confidence 32 2 35899999999 7999999999999999999999987 46777666664
No 63
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.09 E-value=9.1e-09 Score=100.00 Aligned_cols=173 Identities=20% Similarity=0.241 Sum_probs=110.2
Q ss_pred HHHHHHHHHHcCCcEEEEec---cCCc------------------CCCCHHHHHHHHhcCCCCcEEeccccCC------H
Q 015899 199 PVEIARSYEKGGAACLSILT---DEKY------------------FKGSFENLEAVRSAGVKCPLLCKEFIVD------A 251 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLT---d~~~------------------F~Gs~edL~~Ir~a~v~lPVL~KDFIid------~ 251 (398)
-.++++++.++||+.|=+-. ||-+ ...-++.++.+|+..+++|++.--+--+ +
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e 105 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVE 105 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHH
Confidence 35667777788887776621 1100 0234677888886336889763222112 1
Q ss_pred HHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEE---EEcCCHHHHHHHhcc-CCCcEE-eeccccCc--ccc
Q 015899 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL---VEVHDEREMDRVLGI-EGIELI-GINNRNLE--TFE 324 (398)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~L---VEVht~eEl~rAl~l-~Ga~iI-GINnRdL~--tf~ 324 (398)
--+.++.++|+|.|++- .|+.++..++++.|++.|++.. .-..+.+.+....+. .|+-++ +++...-. .|.
T Consensus 106 ~f~~~~~~aGvdgviip--Dlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~ 183 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVA--DLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAA 183 (256)
T ss_pred HHHHHHHHcCCCEEEEC--CCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCC
Confidence 12778899999998875 4666789999999999999963 233446666555554 234433 33321111 133
Q ss_pred cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 325 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 325 vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
.++ .+.++.++. . .+.+++..+||+|+++++++.++|||+|+||++|++
T Consensus 184 ~~~---~~~i~~lr~--~--~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 184 SAL---NELVKRLKA--Y--SAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred hhH---HHHHHHHHh--h--cCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 332 233333221 1 245788899999999999999999999999999997
No 64
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.04 E-value=1.5e-08 Score=94.18 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH----HhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV----RSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I----r~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+..++++ ..++|+.+|.+- ++ ..+.+++... ++.++ ..+++-.| . ...|...|+|+|.|....+
T Consensus 16 ~~~~~~~-~~~~g~~~iqlR-~k---~~~~~~~~~~~~~l~~~~~~~~~liin~----~--~~la~~~~~~gvHl~~~~~ 84 (201)
T PRK07695 16 ELVAVAM-QIHSEVDYIHIR-ER---EKSAKELYEGVESLLKKGVPASKLIIND----R--VDIALLLNIHRVQLGYRSF 84 (201)
T ss_pred hHHHHHH-HHhCCCCEEEEc-CC---CCCHHHHHHHHHHHHHhCCCCCeEEEEC----H--HHHHHHcCCCEEEeCcccC
Confidence 3455665 567799988874 22 2444444332 32211 12344443 2 4567889999999977554
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccc-----ccChhhHHHHhhhhcccccccCCc
Q 015899 273 PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF-----EVDNSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf-----~vDl~~t~~L~~~i~~~~i~~~~v 347 (398)
...++. +.. .++-+-++|||.+++.++.++ |+++|...+...+.- ..+++...++... .++
T Consensus 85 ~~~~~r---~~~--~~~~ig~s~~s~e~a~~a~~~-Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~--------~~i 150 (201)
T PRK07695 85 SVRSVR---EKF--PYLHVGYSVHSLEEAIQAEKN-GADYVVYGHVFPTDCKKGVPARGLEELSDIARA--------LSI 150 (201)
T ss_pred CHHHHH---HhC--CCCEEEEeCCCHHHHHHHHHc-CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh--------CCC
Confidence 433332 222 267778899999999999997 999997653222111 1234444444432 257
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 348 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 348 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
++++.||| +++++..+.+.|+++|.||++|+.++||.++++++..
T Consensus 151 pvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~ 195 (201)
T PRK07695 151 PVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAE 195 (201)
T ss_pred CEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999988764
No 65
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.03 E-value=1e-08 Score=97.79 Aligned_cols=168 Identities=13% Similarity=0.051 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCCcCCCCHHH-------HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec
Q 015899 198 DPVEIARSYEKGG-AACLSILTDEKYFKGSFEN-------LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 198 dp~~iA~aY~~~G-A~aISVLTd~~~F~Gs~ed-------L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
+..+.++...++| ..+|-+- ++. -+... +..+.+. .++|++-.|. +..|...|||+|.|..
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR-~K~---l~~~~~~~~a~~l~~l~~~-~gv~liINd~------~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILP-QYG---LDEATFQKQAEKLVPVIQE-AGAAALIAGD------SRIAGRVKADGLHIEG 95 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEe-CCC---CCHHHHHHHHHHHHHHHHH-hCCEEEEeCH------HHHHHHhCCCEEEECc
Confidence 5667788888889 5777763 222 12222 2222222 3678877664 5568889999999987
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEEE---cCCHHHHHHHhccCCCcEEeeccccCcccccC-----hhhHHHHhhhhcccc
Q 015899 270 AVLPDLDIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINNRNLETFEVD-----NSNTKKLLEGERGEI 341 (398)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~~LVE---Vht~eEl~rAl~l~Ga~iIGINnRdL~tf~vD-----l~~t~~L~~~i~~~~ 341 (398)
..++-.++.. .+|-..++- +|+.+++..|.+. |+++||+..- +++-+.+ ++....+.+.
T Consensus 96 ~d~~~~~~r~------~~~~~~iiG~s~~~s~~~a~~A~~~-gaDYv~~Gpv-~t~tK~~~~p~gl~~l~~~~~~----- 162 (221)
T PRK06512 96 NLAALAEAIE------KHAPKMIVGFGNLRDRHGAMEIGEL-RPDYLFFGKL-GADNKPEAHPRNLSLAEWWAEM----- 162 (221)
T ss_pred cccCHHHHHH------hcCCCCEEEecCCCCHHHHHHhhhc-CCCEEEECCC-CCCCCCCCCCCChHHHHHHHHh-----
Confidence 6554222222 345455555 4689999998887 9999999865 3332222 3333333332
Q ss_pred cccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 342 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 342 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.++++++.||| +++++..++++|+++|-|-++||+.+||..+.++|..
T Consensus 163 ---~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~ 210 (221)
T PRK06512 163 ---IEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANA 210 (221)
T ss_pred ---CCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHH
Confidence 36899999999 9999999999999999999999999999999998864
No 66
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.01 E-value=1.7e-08 Score=98.45 Aligned_cols=146 Identities=18% Similarity=0.301 Sum_probs=100.2
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc--C-
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--H- 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV--h- 296 (398)
-++.++.+|+...++|++.--+.-+-|| +.+++.+|+|++++ --|+.++.+++.+.|+++||+.+.=| +
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii--pDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII--PDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE--CCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4677778883336889765444333344 77899999999998 36788899999999999999986522 2
Q ss_pred CHHHHHHHhccCCCcEE------eeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCC
Q 015899 297 DEREMDRVLGIEGIELI------GINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 370 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iI------GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gad 370 (398)
+.+.++...++ ...+| |++... +.+..++....+.++. . .+++++..+||++++|+.++.+. ||
T Consensus 154 ~~eri~~i~~~-s~gfIY~vs~~GvTG~~-~~~~~~~~~~i~~vk~-----~--~~~pv~vGfGI~~~e~v~~~~~~-AD 223 (258)
T PRK13111 154 TDERLKKIASH-ASGFVYYVSRAGVTGAR-SADAADLAELVARLKA-----H--TDLPVAVGFGISTPEQAAAIAAV-AD 223 (258)
T ss_pred CHHHHHHHHHh-CCCcEEEEeCCCCCCcc-cCCCccHHHHHHHHHh-----c--CCCcEEEEcccCCHHHHHHHHHh-CC
Confidence 35667766665 33322 333221 1223333333333332 1 36788999999999999999986 99
Q ss_pred EEEEcccccCCCC
Q 015899 371 AVLVGESIVKQDD 383 (398)
Q Consensus 371 aVLVGeaLmk~~d 383 (398)
||+||++|++.-+
T Consensus 224 GviVGSaiv~~~~ 236 (258)
T PRK13111 224 GVIVGSALVKIIE 236 (258)
T ss_pred EEEEcHHHHHHHH
Confidence 9999999987654
No 67
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.00 E-value=2.2e-08 Score=103.41 Aligned_cols=182 Identities=20% Similarity=0.277 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEecc---ccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE---FIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KD---FIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
+..++++...++|+..|.+-+ +..+....+.++.+++. ...|.+.-| ..+....+..|..+|||.|.+... -++
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~g~-p~~~~~~~~~i~~l~~~-~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~-~~~ 93 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEAGT-PLIKSEGMNAIRTLRKN-FPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGL-ADD 93 (430)
T ss_pred HHHHHHHHHHhcCCcEEEeCC-HHHHHhhHHHHHHHHHH-CCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecC-CCh
Confidence 445677777779999998732 22223346677777764 344555444 223566899999999999997532 122
Q ss_pred HHHHHHHHHHHHcCCcEEEEc---CC-HHHHHHHhccCCCcEEeeccccCc--ccccC-hhhHHHHhhhhcccccccCCc
Q 015899 275 LDIRYMTKICKLLGLTALVEV---HD-EREMDRVLGIEGIELIGINNRNLE--TFEVD-NSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 275 ~~L~~Li~~a~~LGL~~LVEV---ht-~eEl~rAl~l~Ga~iIGINnRdL~--tf~vD-l~~t~~L~~~i~~~~i~~~~v 347 (398)
..+.++++.+++.|+.+++.+ ++ .+.+..+.++ |+++|++.. ..+ ++... ++...++.+. .++
T Consensus 94 ~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~-GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~--------~~i 163 (430)
T PRK07028 94 STIEDAVRAARKYGVRLMADLINVPDPVKRAVELEEL-GVDYINVHV-GIDQQMLGKDPLELLKEVSEE--------VSI 163 (430)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc-CCCEEEEEe-ccchhhcCCChHHHHHHHHhh--------CCC
Confidence 347789999999999998852 34 4556777886 999998762 221 12111 2233333221 247
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 348 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 348 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
++++.||| +++.+..+.++|++++.+|++|++.+||.+.++.|..
T Consensus 164 PI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~ 208 (430)
T PRK07028 164 PIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIRE 208 (430)
T ss_pred cEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHH
Confidence 89999999 7899999999999999999999999999988887754
No 68
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.99 E-value=5.2e-09 Score=98.98 Aligned_cols=168 Identities=19% Similarity=0.204 Sum_probs=114.6
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHHHHH-------HHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFENLE-------AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~-------~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+..+...++|+.+|..- ++. -+.+++. .+.+. .+.|++-.|. +.-|...|||+|.|....++
T Consensus 23 ~~l~~~l~~G~~~vqLR-~k~---~~~~~~~~la~~l~~~~~~-~~~~liInd~------~~lA~~~~adGVHlg~~d~~ 91 (211)
T PRK03512 23 QWIERLLDAGVRTLQLR-IKD---RRDEEVEADVVAAIALGRR-YQARLFINDY------WRLAIKHQAYGVHLGQEDLE 91 (211)
T ss_pred HHHHHHHhCCCCEEEEc-CCC---CCHHHHHHHHHHHHHHHHH-hCCeEEEeCH------HHHHHHcCCCEEEcChHhCC
Confidence 45667778899888873 222 2332222 22222 3677776663 44477799999999876665
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccccc-------ChhhHHHHhhhhcccccccCC
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV-------DNSNTKKLLEGERGEIIRQKN 346 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~v-------Dl~~t~~L~~~i~~~~i~~~~ 346 (398)
..+...+.. .+.-+=+-|||.+|+.+|.+. |++.|++..- +.|-+. .++...++... . .+
T Consensus 92 ~~~~r~~~~----~~~~iG~S~H~~~e~~~A~~~-gaDYi~lgpv-f~T~tK~~~~~~~G~~~l~~~~~~-----~--~~ 158 (211)
T PRK03512 92 TADLNAIRA----AGLRLGVSTHDDMEIDVALAA-RPSYIALGHV-FPTQTKQMPSAPQGLAQLARHVER-----L--AD 158 (211)
T ss_pred HHHHHHhcC----CCCEEEEeCCCHHHHHHHhhc-CCCEEEECCc-cCCCCCCCCCCCCCHHHHHHHHHh-----c--CC
Confidence 433433211 122233358999999999986 9999999853 322211 23333444332 1 25
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 347 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+++++.||| +++++..++.+|++||-|-++||+.+||.+++++|++
T Consensus 159 ~PV~AiGGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 159 YPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 799999999 7999999999999999999999999999999999875
No 69
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.96 E-value=5.9e-08 Score=94.90 Aligned_cols=146 Identities=15% Similarity=0.336 Sum_probs=98.8
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHH------HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc--CC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV--HD 297 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV--ht 297 (398)
-++.++.+|+. .++|++.--+.-+-|| +.++.++|+|+|++- .|+.++..++.+.|++.|++...=| +|
T Consensus 79 ~~~~~~~~r~~-~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviip--DLP~ee~~~~~~~~~~~gi~~I~lv~PtT 155 (263)
T CHL00200 79 ILSILSEVNGE-IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIP--DLPYEESDYLISVCNLYNIELILLIAPTS 155 (263)
T ss_pred HHHHHHHHhcC-CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 46778888875 7899664444333233 778999999998874 4777889999999999999984444 34
Q ss_pred -HHHHHHHhccC-CCcEEeeccccCcccccC-hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 298 -EREMDRVLGIE-GIELIGINNRNLETFEVD-NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 298 -~eEl~rAl~l~-Ga~iIGINnRdL~tf~vD-l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.+.+....+.. |+ +.-+.+...+.-+.+ .+...++++.++. ..+.+++.-.||+++++++++.++|||||+|
T Consensus 156 ~~eri~~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~----~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVV 230 (263)
T CHL00200 156 SKSRIQKIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKK----MTNKPIILGFGISTSEQIKQIKGWNINGIVI 230 (263)
T ss_pred CHHHHHHHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHH----hcCCCEEEECCcCCHHHHHHHHhcCCCEEEE
Confidence 56666665542 22 222222222222212 1223344443322 1366788899999999999999999999999
Q ss_pred ccccc
Q 015899 375 GESIV 379 (398)
Q Consensus 375 GeaLm 379 (398)
|++|+
T Consensus 231 GSalv 235 (263)
T CHL00200 231 GSACV 235 (263)
T ss_pred CHHHH
Confidence 99995
No 70
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.95 E-value=4.9e-08 Score=94.38 Aligned_cols=176 Identities=22% Similarity=0.247 Sum_probs=123.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHh-cCCCCcEEec---cccC--CH------HHHHHHHHcC
Q 015899 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS-AGVKCPLLCK---EFIV--DA------WQIYYARTKG 261 (398)
Q Consensus 194 ~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~-a~v~lPVL~K---DFIi--d~------~QI~eAr~~G 261 (398)
....++.++.+...++|++++-+. | -.+...+. ...+++++.+ +|-. ++ .++.+|...|
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~--p-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLH--K-------GIVRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeC--c-------chhhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 346689999999999999988872 2 23333221 1245666532 3322 11 3588999999
Q ss_pred cCEEEEeccCCCh------HHHHHHHHHHHHcCCcEEEEcC---------CHHHH----HHHhccCCCcEEeeccccCcc
Q 015899 262 ADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH---------DEREM----DRVLGIEGIELIGINNRNLET 322 (398)
Q Consensus 262 ADaVLLiaaiL~~------~~L~~Li~~a~~LGL~~LVEVh---------t~eEl----~rAl~l~Ga~iIGINnRdL~t 322 (398)
||+|-+-....+. +++..+.+.|+..|+..++.+. +.+++ +.+.++ |+++|++.
T Consensus 104 a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~-GADyikt~------ 176 (258)
T TIGR01949 104 ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAEL-GADIVKTP------ 176 (258)
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHH-CCCEEecc------
Confidence 9999987765432 1355566667778988877432 22332 455666 99999985
Q ss_pred cccChhhHHHHhhhhcccccccCCceEEEecCCC--C----HHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 323 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--T----PDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 323 f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~--t----~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
|..+++...++.+. ..+++++.|||+ | .+.+..+.++|++++.+|.+|++.+||...++.|..
T Consensus 177 ~~~~~~~l~~~~~~--------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 177 YTGDIDSFRDVVKG--------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCK 245 (258)
T ss_pred CCCCHHHHHHHHHh--------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHH
Confidence 34577777777653 246789999999 5 667777789999999999999999999999988864
No 71
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.94 E-value=2.8e-08 Score=95.57 Aligned_cols=174 Identities=19% Similarity=0.291 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHcCCcEEEEe-------ccCCcCC--------------CCHHHHHHHHhcCCCCcEEeccccCC------
Q 015899 198 DPVEIARSYEKGGAACLSIL-------TDEKYFK--------------GSFENLEAVRSAGVKCPLLCKEFIVD------ 250 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-------Td~~~F~--------------Gs~edL~~Ir~a~v~lPVL~KDFIid------ 250 (398)
.-.+.++.++++||++|.+- .|-.+-+ -.++.++.+|+. +++|+..--+.-+
T Consensus 15 ~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 15 TTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHHHhCH
Confidence 35678899999999999985 2223333 346777788875 6899653111111
Q ss_pred HHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---CCHHHHHHHhc-cCCCc-EEeecccc-Ccc-c
Q 015899 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV---HDEREMDRVLG-IEGIE-LIGINNRN-LET-F 323 (398)
Q Consensus 251 ~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV---ht~eEl~rAl~-l~Ga~-iIGINnRd-L~t-f 323 (398)
+.-+.++..+|+|+|++- -|+.+++.++++.++++|+.+.+=+ .+.+.++..++ ..|.- +++++... -++ |
T Consensus 94 ~~fi~~~~~aG~~giiip--Dl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIP--DLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHHCCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 233778889999998884 3566789999999999999885433 35677777776 22332 33444321 112 3
Q ss_pred ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 324 ~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
..+. .+.++.++. . .+++++..+||+++++++++.++ +|+++||++|++.-
T Consensus 172 ~~~~---~~~i~~lr~--~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 172 PDDL---KELIKRIRK--Y--TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred ChhH---HHHHHHHHh--c--CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 2222 222222221 1 36789999999999999999999 99999999998654
No 72
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.93 E-value=3.2e-08 Score=93.09 Aligned_cols=168 Identities=17% Similarity=0.226 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCCH----HHHHHHHhcCCCCcEEeccccCC-----HHHHHHHHHcCcCEEEEecc
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEFIVD-----AWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs~----edL~~Ir~a~v~lPVL~KDFIid-----~~QI~eAr~~GADaVLLiaa 270 (398)
.+++++..+.|+ +.++ .+.+. +. +.++.+++. .+.|+...=|+-+ ...+..+..+|+|+|.|...
T Consensus 16 ~~~~~~~~~~G~--ig~i-~~~~~--~~~~~~~~~~~i~~~-~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~ 89 (236)
T cd04730 16 PELAAAVSNAGG--LGFI-GAGYL--TPEALRAEIRKIRAL-TDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG 89 (236)
T ss_pred HHHHHHHHhCCC--cccc-CCCCC--CHHHHHHHHHHHHHh-cCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC
Confidence 367777777773 4444 22222 22 344555553 3345433222221 22467788899999998654
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCc--ccccChhhHHHHhhhhcccccccCCce
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE--TFEVDNSNTKKLLEGERGEIIRQKNII 348 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~--tf~vDl~~t~~L~~~i~~~~i~~~~v~ 348 (398)
. ...+++.++..++.+++-+++.+++..+.+. |++.|.+.++.-. ....+. ...++++.++. ..+++
T Consensus 90 --~---~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~-gad~i~~~~~~~~G~~~~~~~-~~~~~i~~i~~----~~~~P 158 (236)
T cd04730 90 --P---PAEVVERLKAAGIKVIPTVTSVEEARKAEAA-GADALVAQGAEAGGHRGTFDI-GTFALVPEVRD----AVDIP 158 (236)
T ss_pred --C---CHHHHHHHHHcCCEEEEeCCCHHHHHHHHHc-CCCEEEEeCcCCCCCCCcccc-CHHHHHHHHHH----HhCCC
Confidence 2 2456667777899999999999999999986 9998877544211 111111 11233332211 12578
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCCh
Q 015899 349 VVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 349 vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp 384 (398)
+++.|||++++|+.++..+|+|+|.||++|++..+-
T Consensus 159 vi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 159 VIAAGGIADGRGIAAALALGADGVQMGTRFLATEES 194 (236)
T ss_pred EEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCccc
Confidence 999999999999999999999999999999988763
No 73
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.93 E-value=5.6e-08 Score=102.91 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=125.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCC--Cc-------EEecc-ccC--C-HHHHHH
Q 015899 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVK--CP-------LLCKE-FIV--D-AWQIYY 256 (398)
Q Consensus 192 ~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~--lP-------VL~KD-FIi--d-~~QI~e 256 (398)
.+.++.+..+..+.+.+.+...+=|+.+.+-+.| +..||...... .. .| +++.- ..+ + ...+.+
T Consensus 177 tv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~-p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~ 255 (505)
T PLN02274 177 TAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY-PKLGKPSVGKDGKLLVGAAIGTRESDKERLEH 255 (505)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-cCccccccCCCCCEEEEEEEcCCccHHHHHHH
Confidence 3556777888889999999999999877666666 55666655543 11 11 22211 112 2 245777
Q ss_pred HHHcCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEE-EcCCHHHHHHHhccCCCcEEeec--------cccCccccc
Q 015899 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGIN--------NRNLETFEV 325 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LV-EVht~eEl~rAl~l~Ga~iIGIN--------nRdL~tf~v 325 (398)
..++|+|.|.++++-=......++++..+.. ++.+++ .|.|.+++.++.++ |++.|.+. ++.......
T Consensus 256 l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a-GaD~i~vg~g~G~~~~t~~~~~~g~ 334 (505)
T PLN02274 256 LVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA-GVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
T ss_pred HHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc-CcCEEEECCCCCccccCccccccCC
Confidence 7899999999999742222333677777763 788876 89999999999998 99998553 121111111
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
..-.+..++..+.. ..++++|++|||+++.|+.+++.+||++|.||+.|..+..
T Consensus 335 ~~~~~i~~~~~~~~----~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 335 GQATAVYKVASIAA----QHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTE 388 (505)
T ss_pred CcccHHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhccccc
Confidence 11112222222111 1368999999999999999999999999999999987653
No 74
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.92 E-value=7.6e-09 Score=107.19 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCCHHHH-HHHHhc-----CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGSFENL-EAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL-~~Ir~a-----~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.+..+...++|+..|-.- ++. -+.+.+ +.+++. ..+.|++-.| .+|+ |...|||+|.|...-++
T Consensus 220 ~~~ve~aL~aGv~~VQLR-eK~---ls~~el~~la~~l~~l~~~~gv~LiIND----~~dl--Al~~gAdGVHLGQeDL~ 289 (437)
T PRK12290 220 VEWIERLLPLGINTVQLR-IKD---PQQADLEQQIIRAIALGREYNAQVFIND----YWQL--AIKHQAYGVHLGQEDLE 289 (437)
T ss_pred HHHHHHHHhCCCCEEEEe-CCC---CCHHHHHHHHHHHHHHHHHhCCEEEEEC----HHHH--HHHcCCCEEEcChHHcc
Confidence 456777888999887763 222 233333 222221 1256666555 4555 77899999999987776
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccccc------ChhhHHHHhhhhc---cccccc
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEV------DNSNTKKLLEGER---GEIIRQ 344 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~v------Dl~~t~~L~~~i~---~~~i~~ 344 (398)
..+++.++..-..+|+. +|+.+|+.+|... |+++||+..-=-++-+. .++...++.+.+. ... .
T Consensus 290 ~~~aR~ilg~~~iIGvS----tHs~eEl~~A~~~-gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~--~ 362 (437)
T PRK12290 290 EANLAQLTDAGIRLGLS----THGYYELLRIVQI-QPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQG--Q 362 (437)
T ss_pred hhhhhhhcCCCCEEEEe----cCCHHHHHHHhhc-CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccc--c
Confidence 65565554322345666 8999999999997 99999998542222222 2333333332210 000 0
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.++++||.||| +++++..++++|+++|-|=++||+.+||.+++++|..
T Consensus 363 ~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~ 410 (437)
T PRK12290 363 TGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQ 410 (437)
T ss_pred CCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHH
Confidence 25899999999 9999999999999999999999999999999998864
No 75
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.91 E-value=1.4e-07 Score=91.85 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc-CCCCcEEec-----ccc------CCHHHHHHHHHcCc
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCPLLCK-----EFI------VDAWQIYYARTKGA 262 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a-~v~lPVL~K-----DFI------id~~QI~eAr~~GA 262 (398)
...|+.++.+...++|++++-+ ++-.+...++. ..+.|++.+ .|. .--.++.+|...||
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Ga 107 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLM---------HKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGA 107 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEe---------CHhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCC
Confidence 4668999999999999998887 23344444331 135665431 221 11236889999999
Q ss_pred CEEEEeccCCC--h----HHHHHHHHHHHHcCCcEEEEc----------CCHHH----HHHHhccCCCcEEeeccccCcc
Q 015899 263 DAVLLIAAVLP--D----LDIRYMTKICKLLGLTALVEV----------HDERE----MDRVLGIEGIELIGINNRNLET 322 (398)
Q Consensus 263 DaVLLiaaiL~--~----~~L~~Li~~a~~LGL~~LVEV----------ht~eE----l~rAl~l~Ga~iIGINnRdL~t 322 (398)
|+|-+-..+.+ . +++.++.+.|+..|+.+++.+ ++.++ .+.+.++ |+++|=++
T Consensus 108 d~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~-GAD~vKt~------ 180 (267)
T PRK07226 108 DAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAEL-GADIVKTN------ 180 (267)
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHH-CCCEEeeC------
Confidence 99988766543 2 246667777888999988752 23444 4556676 99999665
Q ss_pred cccChhhHHHHhhhhcccccccCCceEEEecCCC--CHHHHHHH----HHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 323 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--TPDDIAYV----QEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 323 f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~--t~eD~~~l----~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
|..|++...++.+. ..+++++.|||+ |.+++..+ .++|++|+.+|.+|++.+||.+.++.|..
T Consensus 181 ~~~~~~~l~~~~~~--------~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~ 249 (267)
T PRK07226 181 YTGDPESFREVVEG--------CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISA 249 (267)
T ss_pred CCCCHHHHHHHHHh--------CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHH
Confidence 33466665665543 247899999999 87776666 49999999999999999999999988864
No 76
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.90 E-value=1.7e-07 Score=89.55 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=134.2
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcC----CCCHHHHHHHHhcCC-CCcEEeccccCCHHH-HHHHHH
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQ-IYYART 259 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F----~Gs~edL~~Ir~a~v-~lPVL~KDFIid~~Q-I~eAr~ 259 (398)
||| +++.+ ....+..+.++++|++.+|+=--.+.| ..+++.++.+|+. . ++|+-.+=.+-+|+. +..+..
T Consensus 10 ~pS--i~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~-~~~~~lDvHLm~~~p~~~i~~~~~ 86 (228)
T PTZ00170 10 APS--ILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKH-LPNTFLDCHLMVSNPEKWVDDFAK 86 (228)
T ss_pred ehh--HhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHH
Confidence 466 34433 345677788889999999985444433 4578999999986 5 888865555666754 556678
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEE---eec-cccCcccccC-hhhHH
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELI---GIN-NRNLETFEVD-NSNTK 331 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iI---GIN-nRdL~tf~vD-l~~t~ 331 (398)
+|||.|.+-+..- ...+.+.++.+++.|+.+-+.+. +.++++..++....+.| .++ ..+-..|..+ ++...
T Consensus 87 ~Gad~itvH~ea~-~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~ 165 (228)
T PTZ00170 87 AGASQFTFHIEAT-EDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVR 165 (228)
T ss_pred cCCCEEEEeccCC-chHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHH
Confidence 9999998877653 23388999999999988877765 56666655533234544 333 1122222211 23333
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
++.+. + + ++.+-.-||| +++.+..+.++|+|.++||++|++++||.++++++..
T Consensus 166 ~~~~~-----~-~-~~~I~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 166 ELRKR-----Y-P-HLNIQVDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred HHHHh-----c-c-cCeEEECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 33332 1 2 3567778999 8889999999999999999999999999999888753
No 77
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.86 E-value=3.4e-08 Score=101.87 Aligned_cols=128 Identities=14% Similarity=0.208 Sum_probs=96.0
Q ss_pred HHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEE-EcCCHHHHHHHhccCCCcEEeec--------cccC
Q 015899 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGIN--------NRNL 320 (398)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LV-EVht~eEl~rAl~l~Ga~iIGIN--------nRdL 320 (398)
..+.+..++|||.|.++++-=....+.++++..+.. ++.+++ .|.|.+++..+.++ |++.|.+. +|.+
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a-GaD~I~vG~g~Gs~c~tr~~ 234 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV-GADCLKVGIGPGSICTTRIV 234 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc-CCCEEEECCCCCcCCcceee
Confidence 356677889999999999886556788888888763 788766 99999999999998 99987653 2333
Q ss_pred cccc-cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC-CChH
Q 015899 321 ETFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDPG 385 (398)
Q Consensus 321 ~tf~-vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp~ 385 (398)
.... +++.....+.... ...++++|++|||+++.|+.++..+||++|.||++|... +.|+
T Consensus 235 ~g~g~p~ltai~~v~~~~-----~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg 296 (404)
T PRK06843 235 AGVGVPQITAICDVYEVC-----KNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPS 296 (404)
T ss_pred cCCCCChHHHHHHHHHHH-----hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCC
Confidence 3332 2343333332221 123689999999999999999999999999999999984 3444
No 78
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2.1e-07 Score=88.49 Aligned_cols=155 Identities=23% Similarity=0.316 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCCCcEEeccccCCH--HHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEE---cCCHHHH
Q 015899 227 FENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE---VHDEREM 301 (398)
Q Consensus 227 ~edL~~Ir~a~v~lPVL~KDFIid~--~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVE---Vht~eEl 301 (398)
.+-++.+|+...+.+|++-==+.|. +....|..+|||.+..++.. ++..++..++.|+++|.++++| +.|+++.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~ 122 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQR 122 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHH
Confidence 3566677775457788874444554 67778999999999886643 4568999999999999999666 5677777
Q ss_pred HHHhc-cCCCcEEeec-cccCcccccCh-----hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 302 DRVLG-IEGIELIGIN-NRNLETFEVDN-----SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 302 ~rAl~-l~Ga~iIGIN-nRdL~tf~vDl-----~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.+-++ + |++++..- +||..+...+. +..+++.+ .+..+-..||| +|+++..+...|++-|+|
T Consensus 123 ~~~l~~~-gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~---------~g~~vAVaGGI-~~~~i~~~~~~~~~ivIv 191 (217)
T COG0269 123 AKWLKEL-GVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD---------LGAKVAVAGGI-TPEDIPLFKGIGADIVIV 191 (217)
T ss_pred HHHHHHh-CCCEEEEEecccHhhcCCCccHHHHHHHHHhhc---------cCceEEEecCC-CHHHHHHHhcCCCCEEEE
Confidence 77777 7 99988775 67777554443 33344332 24566667888 999999999999999999
Q ss_pred cccccCCCChHHHHHhhhc
Q 015899 375 GESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 375 GeaLmk~~dp~~~i~~L~~ 393 (398)
|.+|+++.||.++.+++..
T Consensus 192 GraIt~a~dp~~~a~~~~~ 210 (217)
T COG0269 192 GRAITGAKDPAEAARKFKE 210 (217)
T ss_pred CchhcCCCCHHHHHHHHHH
Confidence 9999999999999888754
No 79
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.83 E-value=1.7e-07 Score=96.42 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEecccc--CCHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFI--id~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
...++++.....+...+-|-| +-|...+++-++.+|+.+.+.||+.-==+ +..|-+..+..+|||.+.+-+.. +..
T Consensus 186 ~A~~i~~~l~~~~~~~iKvG~-~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea-~~~ 263 (391)
T PRK13307 186 EVERVLSQLPKSDHIIIEAGT-PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLA-PIS 263 (391)
T ss_pred HHHHHHHhcccccceEEEECH-HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccC-CHH
Confidence 344555555443344556644 44566678999999986457787642112 33344667889999999997744 445
Q ss_pred HHHHHHHHHHHcCCcEEEE---cCCHHHHHHHhccCCCcEEeecc-ccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 276 DIRYMTKICKLLGLTALVE---VHDEREMDRVLGIEGIELIGINN-RNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 276 ~L~~Li~~a~~LGL~~LVE---Vht~eEl~rAl~l~Ga~iIGINn-RdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
.+...++.++++|+.+.+| ++|..|..+.+.. ++++|.+-. .|-.+-..-++...++.+. ..++.+..
T Consensus 264 ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~-~vD~Vllht~vdp~~~~~~~~kI~~ikk~-------~~~~~I~V 335 (391)
T PRK13307 264 TIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKV-KPDVVELHRGIDEEGTEHAWGNIKEIKKA-------GGKILVAV 335 (391)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhC-CCCEEEEccccCCCcccchHHHHHHHHHh-------CCCCcEEE
Confidence 7999999999999999998 6667666666664 889887763 4433211112222222221 13577889
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 352 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 352 ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.|||+ ++++..+.++|+|.++||++|++++||.+++++|..
T Consensus 336 dGGI~-~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~ 376 (391)
T PRK13307 336 AGGVR-VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLN 376 (391)
T ss_pred ECCcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 99995 999999999999999999999999999999888764
No 80
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.82 E-value=1.4e-07 Score=93.14 Aligned_cols=164 Identities=17% Similarity=0.221 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCCcE-EEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccC-CHH----HHHHHHHcCcCEEEEeccCC
Q 015899 199 PVEIARSYEKGGAAC-LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV-DAW----QIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 199 p~~iA~aY~~~GA~a-ISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIi-d~~----QI~eAr~~GADaVLLiaaiL 272 (398)
-..+|++..+.|+.. ++-.+ ..+++++. +. ..-|+...-|.- +++ .+..+...|+|+|.+.....
T Consensus 83 ~~~la~aa~~~g~~~~~~~~~-----~~~~~~i~---~~-~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p 153 (299)
T cd02809 83 ELATARAAAAAGIPFTLSTVS-----TTSLEEVA---AA-APGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP 153 (299)
T ss_pred HHHHHHHHHHcCCCEEecCCC-----cCCHHHHH---Hh-cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 478999999999755 34322 24566554 33 235777666654 555 45666788999999876554
Q ss_pred C------hHHHHHHHHHHHHcCCcEE-EEcCCHHHHHHHhccCCCcEEeeccccCcccc---cChhhHHHHhhhhccccc
Q 015899 273 P------DLDIRYMTKICKLLGLTAL-VEVHDEREMDRVLGIEGIELIGINNRNLETFE---VDNSNTKKLLEGERGEII 342 (398)
Q Consensus 273 ~------~~~L~~Li~~a~~LGL~~L-VEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~---vDl~~t~~L~~~i~~~~i 342 (398)
. .+.++++. +..++.++ -+|.+.+++.++.++ |++.|.+.|+.-..+. .++....++.+. +
T Consensus 154 ~~~~~~~~~~i~~l~---~~~~~pvivK~v~s~~~a~~a~~~-G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~-----~ 224 (299)
T cd02809 154 VLGRRLTWDDLAWLR---SQWKGPLILKGILTPEDALRAVDA-GADGIVVSNHGGRQLDGAPATIDALPEIVAA-----V 224 (299)
T ss_pred CCCCCCCHHHHHHHH---HhcCCCEEEeecCCHHHHHHHHHC-CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHH-----h
Confidence 3 22344333 24466654 458999999999997 9999999775433322 223333333332 1
Q ss_pred ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 343 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 343 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
+.++++|+.|||.++.|+.++..+|||+|.||+.++..
T Consensus 225 -~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 225 -GGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYG 262 (299)
T ss_pred -cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 23589999999999999999999999999999998854
No 81
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.82 E-value=1.3e-07 Score=99.59 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=133.0
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCCcEE-------ecccc-C---CHHHHHHHHH
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLL-------CKEFI-V---DAWQIYYART 259 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~lPVL-------~KDFI-i---d~~QI~eAr~ 259 (398)
+.++....+....+.+.+...+-|+.+.+-+-| +..||...... + |.. +...+ + .+..+.....
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~--~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~ 237 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY--T-PAVDAAGRLRVAAAVGINGDVAAKARALLE 237 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC--C-chhhhhhccchHhhhccChhHHHHHHHHHH
Confidence 556677788888899999999988876665666 45566554432 2 321 11111 1 1223444567
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEE-EcCCHHHHHHHhccCCCcEEe----e----ccccCccccc-Ch
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIG----I----NNRNLETFEV-DN 327 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LV-EVht~eEl~rAl~l~Ga~iIG----I----NnRdL~tf~v-Dl 327 (398)
.|+|.|.++++--....+.++++..+.. ++++|+ .|.|.+++..+.++ |++.|+ . +.|.++...+ ++
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a-Gad~v~vgig~gsictt~~~~~~~~p~~ 316 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA-GADIVKVGVGPGAMCTTRMMTGVGRPQF 316 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc-CCCEEEECccCCcccccccccCCchhHH
Confidence 8999999999887766788888888864 899999 99999999999998 999987 3 4566655543 56
Q ss_pred hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 328 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 328 ~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
....+++... ...++++||+|||+++.|+.+++.+||++|.||+.|....
T Consensus 317 ~av~~~~~~~-----~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 317 SAVLECAAAA-----RELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHHHHHHHH-----HhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence 6656665532 1247899999999999999999999999999999997654
No 82
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=98.81 E-value=3.7e-08 Score=103.65 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHH-HHHHHHhc-----CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSA-----GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~e-dL~~Ir~a-----~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
+..+..+...++|+.+|.+- ++. -+.+ .+..+++. ..+++++-.|+ +..|...|||+|.|....
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR-~k~---~~~~~~~~~a~~l~~~~~~~~~~liind~------~~lA~~~~adGvHl~~~d 377 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLR-EKE---AETREFIEEAKACLAICRSYGVPLLINDR------VDVALACDADGVHLGQSD 377 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEc-cCC---CCHHHHHHHHHHHHHHHHHhCCEEEEcCh------HHHHHhcCCCEEEeChHh
Confidence 35567777888899888773 222 1222 22222221 13566665553 445777999999998766
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccc-----ccChhhHHHHhhhhcccccccCC
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF-----EVDNSNTKKLLEGERGEIIRQKN 346 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf-----~vDl~~t~~L~~~i~~~~i~~~~ 346 (398)
++..+.+.++. .+.-+=+-|||.+|+.+|.+. |+++|++..---++- ..+++...++.+. .+
T Consensus 378 ~~~~~~r~~~~----~~~~iG~S~h~~~e~~~a~~~-gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~--------~~ 444 (502)
T PLN02898 378 MPVRLARSLLG----PGKIIGVSCKTPEQAEQAWKD-GADYIGCGGVFPTNTKANNKTIGLDGLREVCEA--------SK 444 (502)
T ss_pred cCHHHHHHhcC----CCCEEEEeCCCHHHHHHHhhc-CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHc--------CC
Confidence 65433333221 122233558999999999997 999999763311111 1245555555432 35
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCC---EEEEcccccCCCChHHHHHhhhc
Q 015899 347 IIVVGESGLFTPDDIAYVQEAGVK---AVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 347 v~vVAESGI~t~eD~~~l~~~Gad---aVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+++++.||| +++++..++++|++ +|-|+++|+..+||.+.++++..
T Consensus 445 ~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~ 493 (502)
T PLN02898 445 LPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHA 493 (502)
T ss_pred CCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHH
Confidence 799999999 69999999999999 99999999999999999998864
No 83
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.81 E-value=1e-07 Score=94.93 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHH----HHHHHHhcCCCCcEEeccccCC---HHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFE----NLEAVRSAGVKCPLLCKEFIVD---AWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~e----dL~~Ir~a~v~lPVL~KDFIid---~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
++|.+..++|+ +.++... + .+++ .|+.+|+. ++.|+=..-+... ..++..+.+.|++.|.+.. -.+
T Consensus 26 ~la~avs~aGg--lG~l~~~-~--~~~~~l~~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~-g~p 98 (307)
T TIGR03151 26 SLAAAVSNAGG--LGIIGAG-N--APPDVVRKEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA-GNP 98 (307)
T ss_pred HHHHHHHhCCC--cceeccc-c--CCHHHHHHHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC-CCc
Confidence 56666666553 3333211 1 1344 34566764 6667422212111 3356667889999998743 222
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
..+++..+..|+.++..|.+.+++.++.++ |++.|.+.+++-....-+. .+..|++.+.. ..++++|+.|
T Consensus 99 ----~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~-GaD~Ivv~g~eagGh~g~~-~~~~ll~~v~~----~~~iPviaaG 168 (307)
T TIGR03151 99 ----GKYIPRLKENGVKVIPVVASVALAKRMEKA-GADAVIAEGMESGGHIGEL-TTMALVPQVVD----AVSIPVIAAG 168 (307)
T ss_pred ----HHHHHHHHHcCCEEEEEcCCHHHHHHHHHc-CCCEEEEECcccCCCCCCC-cHHHHHHHHHH----HhCCCEEEEC
Confidence 247778888899999999999999999998 9999999877443221111 12344443221 1257899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
||.+++|+..++.+||++|.+|+.+.-..
T Consensus 169 GI~~~~~~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 169 GIADGRGMAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred CCCCHHHHHHHHHcCCCEeecchHHhccc
Confidence 99999999999999999999999988654
No 84
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.77 E-value=3.8e-07 Score=95.98 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=129.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCCcE-------Eecccc-C--CHHH-HHHHHH
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPL-------LCKEFI-V--DAWQ-IYYART 259 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~lPV-------L~KDFI-i--d~~Q-I~eAr~ 259 (398)
+.++....+..+.+.+.+...+-|+.+.+-+.| +..||...... + |. ...+.+ + +..+ +.....
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~--~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~ 235 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY--T-PATDAAGRLRIGAAVGINGDVGGKAKALLD 235 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC--C-chhhhccCceehheeeeCccHHHHHHHHHH
Confidence 456667778888899999999888766555555 45566554432 2 32 111111 1 1123 344467
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEEE-cCCHHHHHHHhccCCCcEEe--------eccccCcccccChh
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVE-VHDEREMDRVLGIEGIELIG--------INNRNLETFEVDNS 328 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LVE-Vht~eEl~rAl~l~Ga~iIG--------INnRdL~tf~vDl~ 328 (398)
.|+|.|.++++--......++++..+.. ++.+|+. |.|.+++..+.++ |++.|. .|.|.++.+.+..-
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~-G~d~i~vg~g~Gs~~ttr~~~~~g~~~~ 314 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA-GANIIKVGVGPGAMCTTRMMTGVGRPQF 314 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh-CCCEEEECCcCCccccCccccCCCCchH
Confidence 8999999999885556688888888875 8999999 9999999999998 999998 56777777655422
Q ss_pred h-HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 329 N-TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 329 ~-t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+ ..+++... ...++++||+|||+++.|+.+...+||++|.+|+.|-...
T Consensus 315 ~a~~~~~~~~-----~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~ 364 (475)
T TIGR01303 315 SAVLECAAEA-----RKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTY 364 (475)
T ss_pred HHHHHHHHHH-----HHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccc
Confidence 2 22333321 1236899999999999999999999999999999886543
No 85
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.73 E-value=2.4e-06 Score=81.61 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=131.4
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHHc
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTK 260 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~-~QI~eAr~~ 260 (398)
||| ++..+ .+..+..+.++++|++.||+=.-++.|-- +++.++.+|+..+++|+=+-=-+-+| .-|.....+
T Consensus 3 ~pS--il~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 3 APS--ILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred chh--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 566 34433 34455667788899999999655555532 67889999974247885221112344 446666789
Q ss_pred CcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcE---Eeecc-ccCcccc-cChhhHHH
Q 015899 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIEL---IGINN-RNLETFE-VDNSNTKK 332 (398)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~i---IGINn-RdL~tf~-vDl~~t~~ 332 (398)
|||.|..-+.... .+.++++..+++|+.+=+=+. ..+.++..+.. .++ .++|. ..-..|- ..++...+
T Consensus 81 gad~i~~H~Ea~~--~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~--~D~vlvMtV~PGfgGq~fi~~~lekI~~ 156 (220)
T PRK08883 81 GASMITFHVEASE--HVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDK--VDLILLMSVNPGFGGQSFIPHTLDKLRA 156 (220)
T ss_pred CCCEEEEcccCcc--cHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCeEEEEEecCCCCCceecHhHHHHHHH
Confidence 9999998777653 588899999999999855553 45566655543 443 34442 1112232 22344444
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.+.+... ..++.+.+-|||+ ++.+..+.++|||++++|++|++++|+.+.++++..
T Consensus 157 l~~~~~~~---~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 157 VRKMIDES---GRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred HHHHHHhc---CCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 43331100 1246788999995 999999999999999999999999999999998864
No 86
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.72 E-value=6.3e-07 Score=93.55 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=126.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCCcEEecc----------ccCCH---HHHHHH
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLLCKE----------FIVDA---WQIYYA 257 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~lPVL~KD----------FIid~---~QI~eA 257 (398)
+.++.+..+..+.+.+.+...+-|+.+.+-+.| +.+||-.... -|-.++| .-+.+ ..+...
T Consensus 157 V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~----~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 157 VPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK----FPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc----CCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 455667788888999999999999888777777 5556554432 2333332 11222 245556
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHHHHHH--cCCcEEE-EcCCHHHHHHHhccCCCcEEeecc--------ccCccccc-
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTKICKL--LGLTALV-EVHDEREMDRVLGIEGIELIGINN--------RNLETFEV- 325 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~--LGL~~LV-EVht~eEl~rAl~l~Ga~iIGINn--------RdL~tf~v- 325 (398)
.++|+|.|.+.++--......++++..++ .++.+++ .|-|.+++..+.++ |++.|.+.. |.+..+.+
T Consensus 233 ~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a-Gad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA-GADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred HHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh-CCCEEEECCCCCcCCccceecCCCcc
Confidence 78899999998876444456666766665 3788888 99999999999998 999986542 22222222
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
.+....++.... ...++++|++|||.++.|+.++..+||++|.||+.|.....
T Consensus 312 ~~~~i~~~~~~~-----~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e 364 (450)
T TIGR01302 312 QITAVYDVAEYA-----AQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTE 364 (450)
T ss_pred HHHHHHHHHHHH-----hhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCc
Confidence 223333333321 12468999999999999999999999999999999987654
No 87
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.71 E-value=6.7e-07 Score=89.78 Aligned_cols=198 Identities=20% Similarity=0.204 Sum_probs=134.7
Q ss_pred ceEEEEeccCCCCC-CCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcC--CCCHHHHHHHHhcCCCCcEE---eccccCC
Q 015899 177 PALIAEVKKASPSR-GILREDFDPVEIARSYEKGGAACLSILTDEKYF--KGSFENLEAVRSAGVKCPLL---CKEFIVD 250 (398)
Q Consensus 177 ~~vIAEvKraSPSk-G~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F--~Gs~edL~~Ir~a~v~lPVL---~KDFIid 250 (398)
+-.|+-.+-.|--- | --..-++..+.++.+..|+..+-|---..-+ .|....+..++.. .+.+| ..-+--.
T Consensus 74 ~~~i~~~~~~sRl~~G-tg~y~s~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~--~~~~lpNTag~~ta~ 150 (326)
T PRK11840 74 SWTVAGKTFSSRLLVG-TGKYKDFEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPK--KYTYLPNTAGCYTAE 150 (326)
T ss_pred CeEECCEEEecceeEe-cCCCCCHHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhc--CCEECccCCCCCCHH
Confidence 45677766666531 1 1235689999999999999888664222111 3445666667642 34444 1221111
Q ss_pred HH--HHHHHHHc-CcCEEEEecc---CCChHHHHHHHHHHHHc---CCcE-EEEcCCHHHHHHHhccCCC-------cEE
Q 015899 251 AW--QIYYARTK-GADAVLLIAA---VLPDLDIRYMTKICKLL---GLTA-LVEVHDEREMDRVLGIEGI-------ELI 313 (398)
Q Consensus 251 ~~--QI~eAr~~-GADaVLLiaa---iL~~~~L~~Li~~a~~L---GL~~-LVEVht~eEl~rAl~l~Ga-------~iI 313 (398)
+. -...||++ |-|-|=|=+- -+.-.|+.+.++.|+.| |+++ .++..|..+..++.++ |+ ..|
T Consensus 151 eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g~~avmPl~~pI 229 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-GAVAVMPLGAPI 229 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-CCEEEeeccccc
Confidence 10 11234444 7787776321 11224689999999999 9999 8888999999999988 76 456
Q ss_pred eeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 314 GINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 314 GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
|. ++.+. |.+....+... .+++++.-+||.+++|+..++++||||||+-+++++++||..-.+.+
T Consensus 230 Gs-g~gv~----~p~~i~~~~e~--------~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~ 294 (326)
T PRK11840 230 GS-GLGIQ----NPYTIRLIVEG--------ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAM 294 (326)
T ss_pred cC-CCCCC----CHHHHHHHHHc--------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHH
Confidence 73 35554 55555555553 35899999999999999999999999999999999999998765554
No 88
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.67 E-value=1.1e-07 Score=87.05 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCc----CCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKY----FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~----F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+..+......++|++.|.+-. +.. |..-.+.|..+.+. .+.|++-.| . .+.|.+.|||+|.|...-+.
T Consensus 13 ~~~~~l~~~~~~gv~~v~lR~-k~~~~~~~~~~a~~l~~~~~~-~~~~liin~----~--~~la~~~~~dGvHl~~~~~~ 84 (180)
T PF02581_consen 13 DFLEQLEAALAAGVDLVQLRE-KDLSDEELLELARRLAELCQK-YGVPLIIND----R--VDLALELGADGVHLGQSDLP 84 (180)
T ss_dssp HHHHHHHHHHHTT-SEEEEE--SSS-HHHHHHHHHHHHHHHHH-TTGCEEEES-------HHHHHHCT-SEEEEBTTSSS
T ss_pred hHHHHHHHHHHCCCcEEEEcC-CCCCccHHHHHHHHHHHHhhc-ceEEEEecC----C--HHHHHhcCCCEEEecccccc
Confidence 456677777788888887632 110 00111222222322 366777666 3 44477799999999987776
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccC-----hhhHHHHhhhhcccccccCCce
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVD-----NSNTKKLLEGERGEIIRQKNII 348 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vD-----l~~t~~L~~~i~~~~i~~~~v~ 348 (398)
..+...++..-..+|. -|||.+|+..+.+. |++.+++..---++-+.+ ++...++... ..++
T Consensus 85 ~~~~r~~~~~~~~ig~----S~h~~~e~~~a~~~-g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~--------~~~p 151 (180)
T PF02581_consen 85 PAEARKLLGPDKIIGA----SCHSLEEAREAEEL-GADYVFLGPVFPTSSKPGAPPLGLDGLREIARA--------SPIP 151 (180)
T ss_dssp HHHHHHHHTTTSEEEE----EESSHHHHHHHHHC-TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH--------TSSC
T ss_pred hHHhhhhcccceEEEe----ecCcHHHHHHhhhc-CCCEEEECCccCCCCCccccccCHHHHHHHHHh--------CCCC
Confidence 6555544432223444 49999999999986 999999975422222332 4444444443 2478
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 349 VVGESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 349 vVAESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
+++.||| +++++..++++|+++|-|.++|
T Consensus 152 v~AlGGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 152 VYALGGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp EEEESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred EEEEcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 9999999 8999999999999999998764
No 89
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.66 E-value=3.9e-07 Score=93.16 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEe--c-cCCcC--CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSIL--T-DEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVL--T-d~~~F--~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
.+..++++..+++||+.|.+- | +..|+ .|.+.+|..+++. .++||+.++ +.+.....++..+|||+|+ +..-
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-~~IPVI~G~-V~t~e~A~~~~~aGaDgV~-~G~g 218 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-LDVPVIAGG-VNDYTTALHLMRTGAAGVI-VGPG 218 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEE-ECCC
Confidence 488899999999999999985 2 33332 3578999998886 799999955 7888888888889999999 3332
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
-... . -..+| +.+.....+..+..+ ..+++.. .....+++|+
T Consensus 219 g~~~-~------~~~lg----~~~p~~~ai~d~~~a----------------------~~~~~~e-----~g~r~vpVIA 260 (369)
T TIGR01304 219 GANT-T------RLVLG----IEVPMATAIADVAAA----------------------RRDYLDE-----TGGRYVHVIA 260 (369)
T ss_pred CCcc-c------ccccC----CCCCHHHHHHHHHHH----------------------HHHHHHh-----cCCCCceEEE
Confidence 2110 0 00001 001111111111000 0111121 0012489999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 352 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 352 ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
.|||.+..|+.++..+|||+|.+|+.|.....
T Consensus 261 dGGI~tg~di~kAlAlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 261 DGGIETSGDLVKAIACGADAVVLGSPLARAAE 292 (369)
T ss_pred eCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhc
Confidence 99999999999999999999999999998543
No 90
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.65 E-value=8.5e-07 Score=85.25 Aligned_cols=188 Identities=24% Similarity=0.239 Sum_probs=142.6
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
++.--||+++|+.|.+.||+-|-.|+=.-...|.--++..| .+. +.+|+-....|.+...+.+...+|||-|=+.+
T Consensus 26 lrd~GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~-vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 26 LRDAGDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQ-VFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred hhhcCChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhh-ceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 56678999999999999999999997777777766566555 343 79999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHcCCcEEE----------------EcC-----------CHHHHHHHhccCCCcEEeec--cccC
Q 015899 270 AVLPDLDIRYMTKICKLLGLTALV----------------EVH-----------DEREMDRVLGIEGIELIGIN--NRNL 320 (398)
Q Consensus 270 aiL~~~~L~~Li~~a~~LGL~~LV----------------EVh-----------t~eEl~rAl~l~Ga~iIGIN--nRdL 320 (398)
+.+.+.+| +-+.+...|-+++| ||. ..+=+.++.++ ||-=|=.| ++|-
T Consensus 105 aAv~~p~l--I~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~-GAGEIlLtsmD~DG 181 (256)
T COG0107 105 AAVKDPEL--ITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEEL-GAGEILLTSMDRDG 181 (256)
T ss_pred hHhcChHH--HHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHc-CCceEEEeeecccc
Confidence 99876542 12334456665532 221 12223444455 66544444 6777
Q ss_pred cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhh
Q 015899 321 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 321 ~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.-..|++.+..+... -++++||.||-.++++...+...| +||+|..+-+....-.-.-+++.+
T Consensus 182 tk~GyDl~l~~~v~~~--------v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~yL 246 (256)
T COG0107 182 TKAGYDLELTRAVREA--------VNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEYL 246 (256)
T ss_pred cccCcCHHHHHHHHHh--------CCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHHH
Confidence 7788899998888775 368999999999999999999887 999999988887776555555544
No 91
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.64 E-value=5.4e-07 Score=90.75 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=90.4
Q ss_pred HHHHHHHcCc--CEEEEeccCCChHHHHHHHHHHHH-c-CCcEEE-EcCCHHHHHHHhccCCCcEEeec---cccCcc--
Q 015899 253 QIYYARTKGA--DAVLLIAAVLPDLDIRYMTKICKL-L-GLTALV-EVHDEREMDRVLGIEGIELIGIN---NRNLET-- 322 (398)
Q Consensus 253 QI~eAr~~GA--DaVLLiaaiL~~~~L~~Li~~a~~-L-GL~~LV-EVht~eEl~rAl~l~Ga~iIGIN---nRdL~t-- 322 (398)
++.+..++|+ |+|.++++-=....+.++++..++ . +..+++ +|.|.+++..+.++ |++.|=+. .|+..|
T Consensus 101 ~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a-Gad~i~vg~~~G~~~~t~~ 179 (326)
T PRK05458 101 FVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA-GADATKVGIGPGKVCITKI 179 (326)
T ss_pred HHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc-CcCEEEECCCCCccccccc
Confidence 5666678855 999999987545568888887775 3 588999 89999999999998 99986332 222111
Q ss_pred ---c-ccC--hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 323 ---F-EVD--NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 323 ---f-~vD--l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
. ..| +....++.+. ..+++|++|||.++.|+.++..+||++|.+|..|....
T Consensus 180 ~~g~~~~~w~l~ai~~~~~~--------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~ 237 (326)
T PRK05458 180 KTGFGTGGWQLAALRWCAKA--------ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE 237 (326)
T ss_pred ccCCCCCccHHHHHHHHHHH--------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc
Confidence 1 222 2234455443 24789999999999999999999999999999998543
No 92
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.63 E-value=2.3e-06 Score=90.07 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=123.0
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCC------cEEeccccC---CHHH-HHHHHHc
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKC------PLLCKEFIV---DAWQ-IYYARTK 260 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~l------PVL~KDFIi---d~~Q-I~eAr~~ 260 (398)
+..+....+..+.+.+.+...+-|+++.+.+.| +..||...... ... -++..+.+- +.++ +....++
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~-p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~a 239 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEF-PNACKDEQGRLRVGAAVGVGADNEERAEALVEA 239 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhC-CCcccccCCCEEEEeecccCcchHHHHHHHHHh
Confidence 345667788889999999999999988877777 45555433221 110 122333332 2233 4445688
Q ss_pred CcCEEEEeccCCChHHHHHHHHHHHH-c-CCcE-EEEcCCHHHHHHHhccCCCcEEeec--------cccCcccc-cChh
Q 015899 261 GADAVLLIAAVLPDLDIRYMTKICKL-L-GLTA-LVEVHDEREMDRVLGIEGIELIGIN--------NRNLETFE-VDNS 328 (398)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~-L-GL~~-LVEVht~eEl~rAl~l~Ga~iIGIN--------nRdL~tf~-vDl~ 328 (398)
|+|.+.+..+--......++++..+. + ++.+ +-.|-|.+++..+.++ |++.|.+. .|.+..+. +++.
T Consensus 240 gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a-Gad~i~vg~g~gs~~~~r~~~~~g~p~~~ 318 (486)
T PRK05567 240 GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA-GADAVKVGIGPGSICTTRIVAGVGVPQIT 318 (486)
T ss_pred CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc-CCCEEEECCCCCccccceeecCCCcCHHH
Confidence 99988777653222334455555554 3 6664 4788999999999998 99999652 34444433 2344
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
...++.+.. ...++++|++|||.++.|+.++..+|||+|.||++|.+..
T Consensus 319 ~~~~~~~~~-----~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~ 367 (486)
T PRK05567 319 AIADAAEAA-----KKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTE 367 (486)
T ss_pred HHHHHHHHh-----ccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccc
Confidence 444444431 1246899999999999999999999999999999999875
No 93
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.62 E-value=1.5e-06 Score=85.30 Aligned_cols=145 Identities=23% Similarity=0.417 Sum_probs=100.2
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHH--H----HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAW--Q----IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--- 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~--Q----I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh--- 296 (398)
.++.++.+|+..+++|+..--+..+-| . +..++++|+|++++ .-|+.++-.++.+.|++.||+.+.=|.
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv--pDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV--PDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 456777778656889987655533322 2 44788999999887 458887888899999999999855543
Q ss_pred CHHHHHHHhccC-CCc-EE---eeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCE
Q 015899 297 DEREMDRVLGIE-GIE-LI---GINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371 (398)
Q Consensus 297 t~eEl~rAl~l~-Ga~-iI---GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gada 371 (398)
+.+-+++..+.. |+- ++ |++.-.... .+...++++.++. + .+++++..=||+++++++++.++ |||
T Consensus 159 ~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~----~~~~~~~v~~vr~--~--~~~Pv~vGFGIs~~e~~~~v~~~-ADG 229 (265)
T COG0159 159 PDERLKKIAEAASGFIYYVSRMGVTGARNPV----SADVKELVKRVRK--Y--TDVPVLVGFGISSPEQAAQVAEA-ADG 229 (265)
T ss_pred CHHHHHHHHHhCCCcEEEEecccccCCCccc----chhHHHHHHHHHH--h--cCCCeEEecCcCCHHHHHHHHHh-CCe
Confidence 556677776652 332 22 333222211 1123444444322 1 47889999999999999999999 999
Q ss_pred EEEcccccCC
Q 015899 372 VLVGESIVKQ 381 (398)
Q Consensus 372 VLVGeaLmk~ 381 (398)
|+||++|++.
T Consensus 230 VIVGSAiV~~ 239 (265)
T COG0159 230 VIVGSAIVKI 239 (265)
T ss_pred EEEcHHHHHH
Confidence 9999999863
No 94
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.60 E-value=1.5e-06 Score=87.21 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=89.9
Q ss_pred HHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcC--CcEEE-EcCCHHHHHHHhccCCCcEEeec--------cccCc
Q 015899 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALV-EVHDEREMDRVLGIEGIELIGIN--------NRNLE 321 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LG--L~~LV-EVht~eEl~rAl~l~Ga~iIGIN--------nRdL~ 321 (398)
.+....++|+|.|.+..+.-......++++..++.+ +.+++ .|.|.+++..+.++ |++.|-+. .+...
T Consensus 98 ~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~ 176 (325)
T cd00381 98 RAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVT 176 (325)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeC
Confidence 455667889999999876544455677888777755 77776 78899999999997 99988652 12211
Q ss_pred ccc-cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 322 TFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 322 tf~-vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
... .++....++.+.. ...++++|+.|||.++.|+.++..+||++|.+|+.|....
T Consensus 177 g~g~p~~~~i~~v~~~~-----~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 177 GVGVPQATAVADVAAAA-----RDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTD 233 (325)
T ss_pred CCCCCHHHHHHHHHHHH-----hhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccc
Confidence 111 2333333443321 1136889999999999999999999999999999998765
No 95
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.56 E-value=9.6e-06 Score=80.19 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=111.9
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEE---------------EE--c
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTAL---------------VE--V 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~L---------------VE--V 295 (398)
.++|| |.-|-.-+...+.+|...|.+.|-+..+-++.++ .+++.++|+..|..+= +. +
T Consensus 73 ~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~ 152 (281)
T PRK06806 73 AKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLL 152 (281)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccccee
Confidence 57897 5677777888999999999999999999998654 5667777887665541 11 6
Q ss_pred CCHHHHHHHhccCCCcEEeeccccCc-----ccccChhhHHHHhhhhcccccccCCceEEEec--CCCCHHHHHHHHHcC
Q 015899 296 HDEREMDRVLGIEGIELIGINNRNLE-----TFEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIAYVQEAG 368 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINnRdL~-----tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES--GI~t~eD~~~l~~~G 368 (398)
||.+|+.++.+..|+|.+++..-+.+ .-..|++...++.+. .++++|+-| || +++++.++.++|
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~--------~~iPlV~hG~SGI-~~e~~~~~i~~G 223 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV--------VHIPLVLHGGSGI-SPEDFKKCIQHG 223 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh--------cCCCEEEECCCCC-CHHHHHHHHHcC
Confidence 89999999875349999999321111 123567777777654 246677777 99 899999999999
Q ss_pred CCEEEEcccccCCCChHHHHHhhhc
Q 015899 369 VKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 369 adaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+++|=|+++|+. ++.+++++++.
T Consensus 224 ~~kinv~T~i~~--a~~~a~~~~~~ 246 (281)
T PRK06806 224 IRKINVATATFN--SVITAVNNLVL 246 (281)
T ss_pred CcEEEEhHHHHH--HHHHHHHHHHH
Confidence 999999999998 69999999875
No 96
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.56 E-value=8.5e-07 Score=88.87 Aligned_cols=161 Identities=22% Similarity=0.261 Sum_probs=100.6
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEec-----cCCcCCCCH-----HHHHHHHhcCCCCcEEec-
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-----DEKYFKGSF-----ENLEAVRSAGVKCPLLCK- 245 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLT-----d~~~F~Gs~-----edL~~Ir~a~v~lPVL~K- 245 (398)
..||+-+-..|| .+..++|+.+++.||++|=++. +++.+++++ +.++.+|++ +++||+.|
T Consensus 100 ~pvi~si~g~~~--------~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl 170 (325)
T cd04739 100 IPVIASLNGVSA--------GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKL 170 (325)
T ss_pred CeEEEEeCCCCH--------HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEc
Confidence 358888854333 2457899999999999996643 556665554 556777886 89999988
Q ss_pred --cccCCHHHH-HHHHHcCcCEEEEeccCCCh-HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCc
Q 015899 246 --EFIVDAWQI-YYARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 246 --DFIid~~QI-~eAr~~GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
++ .+...+ ..+.++|||+|.++-+.... .+++. +.. +. . -.+.|+.+.
T Consensus 171 ~p~~-~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~---------~~~-~~-~--------~glSG~~~~-------- 222 (325)
T cd04739 171 SPFF-SALAHMAKQLDAAGADGLVLFNRFYQPDIDLET---------LEV-VP-N--------LLLSSPAEI-------- 222 (325)
T ss_pred CCCc-cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccc---------cce-ec-C--------CCcCCccch--------
Confidence 32 122333 34578899999998775321 00000 000 00 0 001122111
Q ss_pred ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC-CCh
Q 015899 322 TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDP 384 (398)
Q Consensus 322 tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp 384 (398)
.+ -++...++... .++++|+-|||.|.+|+.++..+||++|-||++++.. ++.
T Consensus 223 ~~--al~~v~~v~~~--------~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~ 276 (325)
T cd04739 223 RL--PLRWIAILSGR--------VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDY 276 (325)
T ss_pred hH--HHHHHHHHHcc--------cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchH
Confidence 11 12222333221 3689999999999999999999999999999999983 543
No 97
>PRK08005 epimerase; Validated
Probab=98.56 E-value=9.6e-06 Score=77.18 Aligned_cols=192 Identities=10% Similarity=0.142 Sum_probs=130.2
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcC----CCCHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHH
Q 015899 186 ASPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYART 259 (398)
Q Consensus 186 aSPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F----~Gs~edL~~Ir~a~v~lPVL~KDFIid~-~QI~eAr~ 259 (398)
-||| +++.+ .+..+..+.++++|++.||+=--.+.| .=++..++.+|+. +++|+=.-=-+.+| ..|.+...
T Consensus 3 i~pS--il~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~-t~~~~DvHLMv~~P~~~i~~~~~ 79 (210)
T PRK08005 3 LHPS--LASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQ-TRHPLSFHLMVSSPQRWLPWLAA 79 (210)
T ss_pred EEee--hhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhc-CCCCeEEEeccCCHHHHHHHHHH
Confidence 3576 34433 345566788899999999996555555 3377899999986 78885211112234 45667788
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEE---eec-cccCcccccC-hhhHH
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELI---GIN-NRNLETFEVD-NSNTK 331 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iI---GIN-nRdL~tf~vD-l~~t~ 331 (398)
+|||.|.+-..... .+.++++.++++|+.+-+=+. ..+.++..+.. .|.| .+| ...-..|-.+ ++...
T Consensus 80 ~gad~It~H~Ea~~--~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~--vD~VlvMsV~PGf~GQ~f~~~~~~KI~ 155 (210)
T PRK08005 80 IRPGWIFIHAESVQ--NPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ--LDALMIMTSEPDGRGQQFIAAMCEKVS 155 (210)
T ss_pred hCCCEEEEcccCcc--CHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh--cCEEEEEEecCCCccceecHHHHHHHH
Confidence 99999998777543 478899999999999866654 56666666542 4533 333 1112223222 33333
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
++.+. + + ...+-.-||| +.+.+..+.++|||.+++|++|.+.+|+.+.++.|-
T Consensus 156 ~l~~~-----~-~-~~~I~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 156 QSREH-----F-P-AAECWADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred HHHHh-----c-c-cCCEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 44332 1 2 2347779999 789999999999999999999999999999988774
No 98
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.55 E-value=1.6e-06 Score=86.94 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=99.5
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-----ccCCcCCCCH-----HHHHHHHhcCCCCcEEecc
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKGSF-----ENLEAVRSAGVKCPLLCKE 246 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-----Td~~~F~Gs~-----edL~~Ir~a~v~lPVL~KD 246 (398)
..||+-+-..++ .+..++|+.+++.||++|.+. .++.+.++.. +.++.||+. +++||+.|-
T Consensus 102 ~pvi~sI~g~~~--------~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~-~~iPV~vKl 172 (334)
T PRK07565 102 IPVIASLNGSSA--------GGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSA-VSIPVAVKL 172 (334)
T ss_pred CcEEEEeccCCH--------HHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhc-cCCcEEEEe
Confidence 468888855433 256789999999999999984 3344343333 456778886 899999882
Q ss_pred --ccCCHHHHHH-HHHcCcCEEEEeccCCCh-HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhc--cCCCcEEeeccccC
Q 015899 247 --FIVDAWQIYY-ARTKGADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDEREMDRVLG--IEGIELIGINNRNL 320 (398)
Q Consensus 247 --FIid~~QI~e-Ar~~GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~--l~Ga~iIGINnRdL 320 (398)
++-+...+.. +..+|||+|.++-+.... -+++. ...... +.|+.+..+
T Consensus 173 ~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~---------------------~~~~~~~glsg~~~~~~----- 226 (334)
T PRK07565 173 SPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLET---------------------LEVVPGLVLSTPAELRL----- 226 (334)
T ss_pred CCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh---------------------cccccCCCCCCchhhhH-----
Confidence 2223344544 467899999887664321 01110 000000 111111111
Q ss_pred cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC-CC
Q 015899 321 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DD 383 (398)
Q Consensus 321 ~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~d 383 (398)
-++...++.+. .++++|+.|||.|.+|+.++..+||++|-||++++.. ++
T Consensus 227 -----al~~v~~~~~~--------~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~ 277 (334)
T PRK07565 227 -----PLRWIAILSGR--------VGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPD 277 (334)
T ss_pred -----HHHHHHHHHhh--------cCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcH
Confidence 01112222221 2578999999999999999999999999999999984 44
No 99
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.53 E-value=1.9e-06 Score=95.28 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH-------HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENL-------EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL-------~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+..+..+...++|+++|-+- ++. .+.+.+ ..+++. -+++++-.|. +..|..+|+| |.|...
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR-~K~---~~~~~~~~~a~~l~~l~~~-~~~~liind~------~~la~~~~~d-VHlg~~ 87 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLR-DKN---AGVEDVRAAAKELKELCDA-RGVALVVNDR------LDVAVELGLH-VHIGQG 87 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEe-CCC---CCHHHHHHHHHHHHHHHHH-hCCeEEEeCh------HHHHHHcCCC-eecCCC
Confidence 34556666667888888773 222 232222 222222 3577777764 5567789999 999887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh----cc--CCCcEEeeccccCcccc------cChhhHHHHhhhhc
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL----GI--EGIELIGINNRNLETFE------VDNSNTKKLLEGER 338 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl----~l--~Ga~iIGINnRdL~tf~------vDl~~t~~L~~~i~ 338 (398)
.++....+.++. -++-+=+=|||.+|++.+. .+ .|++.|++..---+.-+ ..++...++...+
T Consensus 88 dl~~~~~r~~~~----~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~- 162 (755)
T PRK09517 88 DTPYTQARRLLP----AHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVA- 162 (755)
T ss_pred cCCHHHHHHhcC----CCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhc-
Confidence 776444443322 1233334489999997753 22 04999999854222222 2345556665542
Q ss_pred ccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 339 GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 339 ~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
...++++++.||| +++++..+.++|+++|-|.++||+++||.+++++|..
T Consensus 163 ----~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~ 212 (755)
T PRK09517 163 ----QDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRT 212 (755)
T ss_pred ----CcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHH
Confidence 1114899999999 9999999999999999999999999999999998864
No 100
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.52 E-value=4.9e-06 Score=78.83 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=129.8
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eA 257 (398)
.||+=+.-.+| .+..++++++.++|..+|=|=-.. .+.++-++.+++..-++ ++-=.-|+++.|+..|
T Consensus 9 ~liaVlr~~~~--------e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a 76 (204)
T TIGR01182 9 KIVPVIRIDDV--------DDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQA 76 (204)
T ss_pred CEEEEEecCCH--------HHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHH
Confidence 45665544433 367789999999999988873211 35667788887641122 3445568999999999
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
..+||+-++ +-.++ .++++.|++.|+..+--+.|..|+..|.++ |+++|=+-.-+. +. .++..+.|..-
T Consensus 77 ~~aGA~Fiv--sP~~~----~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-Ga~~vKlFPA~~--~G-G~~yikal~~p- 145 (204)
T TIGR01182 77 VDAGAQFIV--SPGLT----PELAKHAQDHGIPIIPGVATPSEIMLALEL-GITALKLFPAEV--SG-GVKMLKALAGP- 145 (204)
T ss_pred HHcCCCEEE--CCCCC----HHHHHHHHHcCCcEECCCCCHHHHHHHHHC-CCCEEEECCchh--cC-CHHHHHHHhcc-
Confidence 999999983 23343 468889999999999999999999999998 999987654321 10 12333344321
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
+ .++.++.-||| +++++....++|+.+|-+|+.|++.+.
T Consensus 146 ----l--p~i~~~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 146 ----F--PQVRFCPTGGI-NLANVRDYLAAPNVACGGGSWLVPKDL 184 (204)
T ss_pred ----C--CCCcEEecCCC-CHHHHHHHHhCCCEEEEEChhhcCchh
Confidence 2 36889999999 779999999999999999999997553
No 101
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.51 E-value=7.6e-06 Score=77.86 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=129.7
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eA 257 (398)
.+|+=+.-.+|. +..++++++.++|..+|=|= .. ..+.++-++.+|+..-++ ++-=|-+++++|+..|
T Consensus 16 ~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-l~--~~~~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~~a 83 (212)
T PRK05718 16 PVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-LR--TPAALEAIRLIAKEVPEA-LIGAGTVLNPEQLAQA 83 (212)
T ss_pred CEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-cC--CccHHHHHHHHHHHCCCC-EEEEeeccCHHHHHHH
Confidence 467766544443 67889999999999998873 21 225677788887652232 4556788999999999
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
..+|||-++--. +++ ++++.|++.|+..+=.+.|+.|+..|.++ |+++|-+-.-+. + ..++..+.|..-
T Consensus 84 ~~aGA~FivsP~--~~~----~vi~~a~~~~i~~iPG~~TptEi~~a~~~-Ga~~vKlFPa~~--~-gg~~~lk~l~~p- 152 (212)
T PRK05718 84 IEAGAQFIVSPG--LTP----PLLKAAQEGPIPLIPGVSTPSELMLGMEL-GLRTFKFFPAEA--S-GGVKMLKALAGP- 152 (212)
T ss_pred HHcCCCEEECCC--CCH----HHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEEccchh--c-cCHHHHHHHhcc-
Confidence 999999876533 443 67888999999999999999999999998 999998843221 1 134444444332
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+ +++.++.-||| +++++....++|+-.+..|+.|++.+
T Consensus 153 ----~--p~~~~~ptGGV-~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 153 ----F--PDVRFCPTGGI-SPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred ----C--CCCeEEEeCCC-CHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 2 35889999999 78999999999977777788887644
No 102
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.50 E-value=3.7e-06 Score=86.06 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=85.8
Q ss_pred HHHHHHcCcCEEEEeccCCC-----hH-HHHHHHHHHHHcCCcEEE-EcCCHHHHHHHhccCCCcEEeec--cc-cCcc-
Q 015899 254 IYYARTKGADAVLLIAAVLP-----DL-DIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN--NR-NLET- 322 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~-----~~-~L~~Li~~a~~LGL~~LV-EVht~eEl~rAl~l~Ga~iIGIN--nR-dL~t- 322 (398)
+..+.++|+|+|.+..+..+ .. +...+.+..++.++.+++ .|.|.+++..++++ |++.|-+. .- .-+|
T Consensus 147 a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~a-GAD~V~VG~G~Gs~~~t~ 225 (368)
T PRK08649 147 APTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRT-GAAGVLVGIGPGAACTSR 225 (368)
T ss_pred HHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc-CCCEEEECCCCCcCCCCc
Confidence 44556899999999664321 11 345577777788999998 99999999999996 99976432 10 1111
Q ss_pred --cccChhhHHHHhhhh--cccc---cccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 323 --FEVDNSNTKKLLEGE--RGEI---IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 323 --f~vDl~~t~~L~~~i--~~~~---i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
..+.+.+...+.+.. ..+. ....++++|+.|||.++.|+.++..+|||+|.+|+.|....
T Consensus 226 ~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 226 GVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAA 292 (368)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence 122222222222110 0000 00125899999999999999999999999999999998744
No 103
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.49 E-value=5.1e-06 Score=87.95 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=119.3
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCCcEEecc---------c-cCCHH---HHHHH
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLLCKE---------F-IVDAW---QIYYA 257 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~lPVL~KD---------F-Iid~~---QI~eA 257 (398)
+.++.+..+..+.+.+.+...+-|+.+.+-+-| +..||.... ..|--+|| . .+.+. .+...
T Consensus 174 v~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~----~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l 249 (495)
T PTZ00314 174 GNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR----GYPNASLDSNGQLLVGAAISTRPEDIERAAAL 249 (495)
T ss_pred eCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc----cCchhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 345667778888888899999999887776666 445554443 23433443 1 12333 34445
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEE-EcCCHHHHHHHhccCCCcEEee----c----cccCccccc-
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALV-EVHDEREMDRVLGIEGIELIGI----N----NRNLETFEV- 325 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LV-EVht~eEl~rAl~l~Ga~iIGI----N----nRdL~tf~v- 325 (398)
..+|+|.|.+..+-=......++++..++. ++.+++ .|-|.+++..+.++ |++.|-+ . .|......+
T Consensus 250 ~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a-Gad~I~vg~g~Gs~~~t~~~~~~g~p 328 (495)
T PTZ00314 250 IEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA-GADGLRIGMGSGSICITQEVCAVGRP 328 (495)
T ss_pred HHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc-CCCEEEECCcCCcccccchhccCCCC
Confidence 688999999987522112223455555543 677777 88999999999998 9998832 1 122222222
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
.+....++.... ...++++|++|||.++.|+.++..+||++|.+|+.|....
T Consensus 329 ~~~ai~~~~~~~-----~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 329 QASAVYHVARYA-----RERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTE 380 (495)
T ss_pred hHHHHHHHHHHH-----hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcccc
Confidence 222323333321 1246899999999999999999999999999999998865
No 104
>PRK08999 hypothetical protein; Provisional
Probab=98.47 E-value=1e-06 Score=86.70 Aligned_cols=199 Identities=18% Similarity=0.151 Sum_probs=119.3
Q ss_pred cCChHHHHHhhhcCCCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCC--
Q 015899 144 RRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK-- 221 (398)
Q Consensus 144 ~~pl~~l~~~~~~~~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~-- 221 (398)
-+|++++.+ +...++.+.+.+.|.- ..+-+|..=.. ....+..+.++....+|+++|.+=. +.
T Consensus 105 Wv~~~el~~-~~~~~~~~~i~~~l~l-----p~ly~it~~~~--------~~~~~~~~~~~~~l~~g~~~vqlR~-k~~~ 169 (312)
T PRK08999 105 WVAPDELAV-YPFPPANQPIVRALRL-----PDTYLITPEGE--------DGDAAFLARLERALAAGIRLIQLRA-PQLP 169 (312)
T ss_pred EecHHHccc-CCCCcchHHHHHHhcC-----CCEEEEECccc--------cccHHHHHHHHHHHHCCCcEEEEeC-CCCC
Confidence 355555543 2333445556665543 23556654211 1111334556566688998887632 11
Q ss_pred --cCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHH
Q 015899 222 --YFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299 (398)
Q Consensus 222 --~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~e 299 (398)
.+..-...+..+.+. .++|++--|+ +..|..+|||+|.|.-..++...... ...++-+=+=|||.+
T Consensus 170 ~~~~~~~~~~l~~~~~~-~~~~liind~------~~la~~~~~~GvHl~~~d~~~~~~r~-----~~~~~~ig~S~h~~~ 237 (312)
T PRK08999 170 PAAYRALARAALGLCRR-AGAQLLLNGD------PELAEDLGADGVHLTSAQLAALAARP-----LPAGRWVAASCHDAE 237 (312)
T ss_pred HHHHHHHHHHHHHHHHH-hCCEEEEECc------HHHHHhcCCCEEEcChhhcChHhhcc-----CCCCCEEEEecCCHH
Confidence 111122233333332 4677776664 35577899999999876655322211 111233334579999
Q ss_pred HHHHHhccCCCcEEeeccccCcccc-----cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 300 EMDRVLGIEGIELIGINNRNLETFE-----VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 300 El~rAl~l~Ga~iIGINnRdL~tf~-----vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
|+..|.+. |++.|++..---+.-+ ..++...++... .+++++|.||| +++++..++++|+++|-|
T Consensus 238 ~~~~a~~~-~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~--------~~~Pv~AiGGI-~~~~~~~~~~~g~~gva~ 307 (312)
T PRK08999 238 ELARAQRL-GVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG--------VPLPVYALGGL-GPGDLEEAREHGAQGIAG 307 (312)
T ss_pred HHHHHHhc-CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh--------CCCCEEEECCC-CHHHHHHHHHhCCCEEEE
Confidence 99999997 9999999853221111 234444555443 35799999999 999999999999999998
Q ss_pred ccccc
Q 015899 375 GESIV 379 (398)
Q Consensus 375 GeaLm 379 (398)
-++|.
T Consensus 308 i~~~~ 312 (312)
T PRK08999 308 IRGLW 312 (312)
T ss_pred EEEeC
Confidence 87763
No 105
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=98.43 E-value=4.8e-05 Score=73.00 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=130.3
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHc
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTK 260 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~-QI~eAr~~ 260 (398)
||| ++..+ .+..+..+.++++|++.||+=--++.|-- +++.++.+|+..+++|+=+-=-+.+|. .|.....+
T Consensus 7 ~pS--il~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~ 84 (223)
T PRK08745 7 APS--ILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADA 84 (223)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 576 34433 35566778888999999999655555532 677899999842478852211223444 46666788
Q ss_pred CcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEE---eecc-ccCcccccC-hhhHHH
Q 015899 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELI---GINN-RNLETFEVD-NSNTKK 332 (398)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iI---GINn-RdL~tf~vD-l~~t~~ 332 (398)
|||.|.+-+... ..+.++++..+++|+.+=+=+. ..+.++..+.. .+.| .+|. ..-..|..+ ++...+
T Consensus 85 gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~--vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 85 GATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE--LDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred CCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 999999877754 3478899999999998844443 45555555543 4533 3331 122333322 233333
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.+..... ..++.+=.-||| +.+.+..+.++|+|.+++|++|++.+|+.+.+++|..
T Consensus 161 l~~~~~~~---~~~~~IeVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 161 IRKKIDAL---GKPIRLEIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred HHHHHHhc---CCCeeEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 33321110 124567778999 7999999999999999999999999999999988864
No 106
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.40 E-value=1.5e-05 Score=78.04 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=97.2
Q ss_pred HHHHHHHhc--CCCCcEEeccccCCHHH----HHHHHHcCcCEEEEecc----------CC-ChHHHHHHHHHHHHc-CC
Q 015899 228 ENLEAVRSA--GVKCPLLCKEFIVDAWQ----IYYARTKGADAVLLIAA----------VL-PDLDIRYMTKICKLL-GL 289 (398)
Q Consensus 228 edL~~Ir~a--~v~lPVL~KDFIid~~Q----I~eAr~~GADaVLLiaa----------iL-~~~~L~~Li~~a~~L-GL 289 (398)
..++.+++. ..+.|++..=+..++.+ ...+..+|+|+|=|... .+ +.+.+.++++..++. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 445555332 14678764322223322 22344679999988543 22 344577888888765 88
Q ss_pred cEEEEcC----CHHH-HHHHhccCCCcEEeeccc------cCccccc-------------ChhhHHHHhhhhcccccccC
Q 015899 290 TALVEVH----DERE-MDRVLGIEGIELIGINNR------NLETFEV-------------DNSNTKKLLEGERGEIIRQK 345 (398)
Q Consensus 290 ~~LVEVh----t~eE-l~rAl~l~Ga~iIGINnR------dL~tf~v-------------Dl~~t~~L~~~i~~~~i~~~ 345 (398)
.++|-+. +..+ ++.+.++ |++.|-+-|+ +..+..+ +.....+++..++. ..
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~----~~ 230 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEA-GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYK----AV 230 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHc-CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHH----hc
Confidence 8888764 2334 3445565 9997765443 2222211 01112233333221 12
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
++++|+.|||.+++|+.++..+|||+|-||++++..++....+++
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHH
Confidence 689999999999999999999999999999999997775555443
No 107
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.40 E-value=8.1e-06 Score=78.78 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCH----HHH----HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSF----ENL----EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~----edL----~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+.+..+...+.|+++|-| +||. +++ ..+|+ +++||+- |.=++.||- -|||+++.. +
T Consensus 21 ~~~~~~~~~~~gtdai~v-------GGS~~vt~~~~~~~v~~ik~--~~lPvil--fp~~~~~i~----~~aDa~l~~-s 84 (232)
T PRK04169 21 PDEALEAICESGTDAIIV-------GGSDGVTEENVDELVKAIKE--YDLPVIL--FPGNIEGIS----PGADAYLFP-S 84 (232)
T ss_pred CHHHHHHHHhcCCCEEEE-------cCCCccchHHHHHHHHHHhc--CCCCEEE--eCCCccccC----cCCCEEEEE-E
Confidence 334446677789999998 4555 333 44454 6899875 544555543 479999885 4
Q ss_pred CCCh--------HHHHHHHHHHHHcCCcEEE-------------------Ec-CCHHHHHHHhccC----CCcEEeeccc
Q 015899 271 VLPD--------LDIRYMTKICKLLGLTALV-------------------EV-HDEREMDRVLGIE----GIELIGINNR 318 (398)
Q Consensus 271 iL~~--------~~L~~Li~~a~~LGL~~LV-------------------EV-ht~eEl~rAl~l~----Ga~iIGINnR 318 (398)
+|+. .+.+.+-. .+..|++++- .+ .|.+|+..+..+. |..++=+---
T Consensus 85 vlNs~~~~~iig~~~~~~~~-~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~g 163 (232)
T PRK04169 85 VLNSRNPYWIIGAHVEAAPI-IKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYG 163 (232)
T ss_pred EecCCCcchHhhHHHHHHHH-HhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECC
Confidence 4432 22222222 2456777622 11 3666666655541 2222211111
Q ss_pred cCcccccChhhHHHHhhhhcccccccCCc-eEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 319 NLETFEVDNSNTKKLLEGERGEIIRQKNI-IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 319 dL~tf~vDl~~t~~L~~~i~~~~i~~~~v-~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.-....++.+...++.+. .+. +++..|||+++++++++..+|||+|+||+++.+. |.+.++++..
T Consensus 164 s~~g~~~~~e~I~~v~~~--------~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d--~~~~~~~~~~ 229 (232)
T PRK04169 164 GGAGDPVPPEMVKAVKKA--------LDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEED--PKKTVKAIKK 229 (232)
T ss_pred CCCCCCCCHHHHHHHHHh--------cCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhC--HHHHHHHHHh
Confidence 111234556666666553 234 7889999999999999999999999999999964 5577776643
No 108
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.38 E-value=1.3e-05 Score=75.63 Aligned_cols=175 Identities=22% Similarity=0.257 Sum_probs=122.5
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eA 257 (398)
.||+=+.-.++ .+..++++++.++|-.+|-|--.. .+.++-++.+++..-++ ++-=.-+++..|+..|
T Consensus 9 ~iiaVir~~~~--------~~a~~~~~al~~gGi~~iEiT~~t---~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a 76 (196)
T PF01081_consen 9 KIIAVIRGDDP--------EDAVPIAEALIEGGIRAIEITLRT---PNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAA 76 (196)
T ss_dssp SEEEEETTSSG--------GGHHHHHHHHHHTT--EEEEETTS---TTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHH
T ss_pred CEEEEEEcCCH--------HHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHH
Confidence 46666654443 478899999999999988873222 24567777777641222 4455568999999999
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
..+||+-++-= .++ .+++++|++.|+..+=-|-|..|+..|.++ |++++=+-.-+.- . .++..+.|..-
T Consensus 77 ~~aGA~FivSP--~~~----~~v~~~~~~~~i~~iPG~~TptEi~~A~~~-G~~~vK~FPA~~~--G-G~~~ik~l~~p- 145 (196)
T PF01081_consen 77 IAAGAQFIVSP--GFD----PEVIEYAREYGIPYIPGVMTPTEIMQALEA-GADIVKLFPAGAL--G-GPSYIKALRGP- 145 (196)
T ss_dssp HHHT-SEEEES--S------HHHHHHHHHHTSEEEEEESSHHHHHHHHHT-T-SEEEETTTTTT--T-HHHHHHHHHTT-
T ss_pred HHcCCCEEECC--CCC----HHHHHHHHHcCCcccCCcCCHHHHHHHHHC-CCCEEEEecchhc--C-cHHHHHHHhcc-
Confidence 99999997652 344 468899999999999999999999999998 9999877543321 0 02333444332
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+ .++.++.-||| +++++....++|+.++.+|+.|++.+
T Consensus 146 ----~--p~~~~~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 146 ----F--PDLPFMPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp ----T--TT-EEEEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred ----C--CCCeEEEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence 2 36889999999 67999999999999999999999865
No 109
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.37 E-value=2.7e-06 Score=83.32 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=95.9
Q ss_pred HHHHHHHH-hcCCCCcEEeccccCCHHH------HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEE--EEc-C
Q 015899 227 FENLEAVR-SAGVKCPLLCKEFIVDAWQ------IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL--VEV-H 296 (398)
Q Consensus 227 ~edL~~Ir-~a~v~lPVL~KDFIid~~Q------I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~L--VEV-h 296 (398)
++.++.+| +. .++|++---+.-+-++ +.++..+|+|++++ --|+.++-.++.+.|+..|++.+ |=- .
T Consensus 75 ~~~~~~ir~~~-~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi--pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t 151 (259)
T PF00290_consen 75 FELVKEIRKKE-PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII--PDLPPEESEELREAAKKHGLDLIPLVAPTT 151 (259)
T ss_dssp HHHHHHHHHHC-TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE--TTSBGGGHHHHHHHHHHTT-EEEEEEETTS
T ss_pred HHHHHHHhccC-CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE--cCCChHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 46677888 54 8999875443221111 55778999999877 45777788899999999999884 333 3
Q ss_pred CHHHHHHHhcc-CCCcEEeeccccCcccccCh-hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 297 DEREMDRVLGI-EGIELIGINNRNLETFEVDN-SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 297 t~eEl~rAl~l-~Ga~iIGINnRdL~tf~vDl-~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
+.+.+++..+. .|+ +--+.....+....++ +...++++.++. . .+.+++..=||+|+++++.+. .|+|||+|
T Consensus 152 ~~~Ri~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~--~--~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIV 225 (259)
T PF00290_consen 152 PEERIKKIAKQASGF-IYLVSRMGVTGSRTELPDELKEFIKRIKK--H--TDLPVAVGFGISTPEQAKKLA-AGADGVIV 225 (259)
T ss_dssp -HHHHHHHHHH-SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHH--T--TSS-EEEESSS-SHHHHHHHH-TTSSEEEE
T ss_pred CHHHHHHHHHhCCcE-EEeeccCCCCCCcccchHHHHHHHHHHHh--h--cCcceEEecCCCCHHHHHHHH-ccCCEEEE
Confidence 45666665543 232 2222211222221121 223333333321 1 478999999999999999999 99999999
Q ss_pred cccccCC-----CChHHHHHhh
Q 015899 375 GESIVKQ-----DDPGKGITGL 391 (398)
Q Consensus 375 GeaLmk~-----~dp~~~i~~L 391 (398)
|++|++. ++..+.++++
T Consensus 226 GSa~v~~i~~~~~~~~~~~~~~ 247 (259)
T PF00290_consen 226 GSAFVKIIEENGDDAEKFLKEL 247 (259)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHccccHHHHHHHH
Confidence 9999864 3444455544
No 110
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.36 E-value=6.1e-05 Score=74.94 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCCcEEEEeccC--CcCCCCHHHHH----HHHhc-CCCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 200 VEIARSYEKGGAACLSILTDE--KYFKGSFENLE----AVRSA-GVKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~--~~F~Gs~edL~----~Ir~a-~v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
..+.++.++.++..|==++.. +|+ |+++.+. .+.+. .+++|| |.=|-. +...+.+|...|.+.|.+..+-
T Consensus 32 ~avi~aAe~~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~ 109 (293)
T PRK07315 32 QAILRAAEAKKAPVLIQTSMGAAKYM-GGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSH 109 (293)
T ss_pred HHHHHHHHHHCCCEEEEcCccHHhhc-CcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCC
Confidence 344555666565554433322 233 3233322 22222 236787 577877 7778999999999999999999
Q ss_pred CChHH----HHHHHHHHHHcCCcE------E---------EEc-CCHHHHHHHhccCCCcEEeec--cc--cCcc--ccc
Q 015899 272 LPDLD----IRYMTKICKLLGLTA------L---------VEV-HDEREMDRVLGIEGIELIGIN--NR--NLET--FEV 325 (398)
Q Consensus 272 L~~~~----L~~Li~~a~~LGL~~------L---------VEV-ht~eEl~rAl~l~Ga~iIGIN--nR--dL~t--f~v 325 (398)
++.++ .+++.++|+..|..+ + ..+ ||++|+.++.+. |+|.|++. +- .+.| -..
T Consensus 110 l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~t-gvD~LAv~iG~vHG~y~t~~k~l 188 (293)
T PRK07315 110 LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVET-GIDFLAAGIGNIHGPYPENWEGL 188 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHc-CCCEEeeccccccccCCCCCCcC
Confidence 98654 556667777655544 1 123 899999999985 99999987 33 1222 357
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecC--CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESG--LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESG--I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
|++...++.+.+ .++++|+-|| | +.+++.++.++|++.|=|++.|.. ++.+++++++.
T Consensus 189 ~~e~L~~i~~~~-------~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~ 248 (293)
T PRK07315 189 DLDHLEKLTEAV-------PGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFAR 248 (293)
T ss_pred CHHHHHHHHHhc-------cCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHH
Confidence 888877776652 1355566555 9 889999999999999999999996 88888888764
No 111
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.34 E-value=1.4e-05 Score=77.88 Aligned_cols=149 Identities=16% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCcEEeccccCCHHH----HHHHHHcCcCEEEEeccC---------C-ChHHHHHHHHHHHH-cCCcEEEEcCC-----
Q 015899 238 VKCPLLCKEFIVDAWQ----IYYARTKGADAVLLIAAV---------L-PDLDIRYMTKICKL-LGLTALVEVHD----- 297 (398)
Q Consensus 238 v~lPVL~KDFIid~~Q----I~eAr~~GADaVLLiaai---------L-~~~~L~~Li~~a~~-LGL~~LVEVht----- 297 (398)
.+.|++..=+..++.+ +..+..+|+|+|-|.... + .++.+.++++..++ .++.+++-+..
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 3678764322234433 233456699999998653 1 23457788887775 47777776552
Q ss_pred --HHHHHHHhccCCCcEEeeccccCccccc-------------------ChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 298 --EREMDRVLGIEGIELIGINNRNLETFEV-------------------DNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 298 --~eEl~rAl~l~Ga~iIGINnRdL~tf~v-------------------Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
.+-++.+.++ |++.|-+.|+....... ......+.+..++.. + +.++++|+.|||.
T Consensus 177 ~~~~~a~~l~~~-Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-~-~~~ipiia~GGI~ 253 (289)
T cd02810 177 DIVELAKAAERA-GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-L-QLDIPIIGVGGID 253 (289)
T ss_pred HHHHHHHHHHHc-CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-c-CCCCCEEEECCCC
Confidence 2234445565 99999887764321100 000122223322211 1 2368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccCC-CChHHHHH
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIVKQ-DDPGKGIT 389 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLmk~-~dp~~~i~ 389 (398)
|++|+.++..+|||+|.||++++.. ++....++
T Consensus 254 ~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 254 SGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 9999999999999999999999987 77666554
No 112
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=0.0001 Score=70.71 Aligned_cols=197 Identities=22% Similarity=0.272 Sum_probs=135.5
Q ss_pred cCCCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHH
Q 015899 185 KASPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYAR 258 (398)
Q Consensus 185 raSPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~-QI~eAr 258 (398)
+-+|| ++..+ ....+..+.++++||+.||+=.-.+.|-- ++..++.+|+. +++|+=+-=-+.+|. .+..-.
T Consensus 5 ~iapS--ILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~-t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 5 KIAPS--ILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKI-TDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred eeeee--hhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhc-CCCceEEEEecCCHHHHHHHHH
Confidence 34576 34433 35667788999999999999666655544 56889999985 788874433344554 556667
Q ss_pred HcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC--C-HHHHHHHhccCCCcEE---eec-cccCcccccC-hhhH
Q 015899 259 TKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH--D-EREMDRVLGIEGIELI---GIN-NRNLETFEVD-NSNT 330 (398)
Q Consensus 259 ~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh--t-~eEl~rAl~l~Ga~iI---GIN-nRdL~tf~vD-l~~t 330 (398)
.+|||.|.+-+. ....+.+++++.+++|+.+=+=.+ | .+-++..++ .+++| .+| ...-..|-.+ ++..
T Consensus 82 ~agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 82 KAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred HhCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccCHHHHHHH
Confidence 899999999888 344689999999999999844443 4 444454554 35544 334 1122333322 3344
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.++.+.+.. . .++.+-.-||| +.+.+..+.++|+|-++.|++|.+++|..+.++++.+
T Consensus 158 ~~lr~~~~~---~-~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~ 215 (220)
T COG0036 158 RELRAMIDE---R-LDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELRG 215 (220)
T ss_pred HHHHHHhcc---c-CCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHH
Confidence 444443211 0 15677788999 8899999999999999999999999998888888765
No 113
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.30 E-value=8.5e-05 Score=73.51 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=104.5
Q ss_pred CC-CcEE-eccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEE-----------------EE
Q 015899 238 VK-CPLL-CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTAL-----------------VE 294 (398)
Q Consensus 238 v~-lPVL-~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~L-----------------VE 294 (398)
.+ +||. .-|-.-+.-.+.+|...|.+.|.+..+-++.++ .+++++.|+..|..+= .-
T Consensus 72 ~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~ 151 (282)
T TIGR01859 72 MSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAE 151 (282)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccc
Confidence 46 8985 447666677899999999999999999998654 5677788888887532 11
Q ss_pred cCCHHHHHHHhc-cCCCcEEeeccc----cCcc-cccChhhHHHHhhhhcccccccCCceEEEec--CCCCHHHHHHHHH
Q 015899 295 VHDEREMDRVLG-IEGIELIGINNR----NLET-FEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIAYVQE 366 (398)
Q Consensus 295 Vht~eEl~rAl~-l~Ga~iIGINnR----dL~t-f~vDl~~t~~L~~~i~~~~i~~~~v~vVAES--GI~t~eD~~~l~~ 366 (398)
.||++|+.++.+ . |++.|++.-- .+++ -..|++...++.+. .++++|+-| || +.+++.++.+
T Consensus 152 ~t~~eea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~--------~~iPlv~hGgSGi-~~e~i~~~i~ 221 (282)
T TIGR01859 152 LADPDEAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL--------TNIPLVLHGASGI-PEEQIKKAIK 221 (282)
T ss_pred cCCHHHHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHH--------hCCCEEEECCCCC-CHHHHHHHHH
Confidence 679999999997 5 9999996421 2222 34567776666554 246677777 99 7899999999
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhh
Q 015899 367 AGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 367 ~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+|+++|=||+.|... ...++++.+
T Consensus 222 ~Gi~kiNv~T~l~~a--~~~~~~~~~ 245 (282)
T TIGR01859 222 LGIAKINIDTDCRIA--FTAAIRKVL 245 (282)
T ss_pred cCCCEEEECcHHHHH--HHHHHHHHH
Confidence 999999999998632 334444443
No 114
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.26 E-value=1.1e-05 Score=81.07 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccC--cccccChh
Q 015899 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNS 328 (398)
Q Consensus 251 ~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~ 328 (398)
.-|+..+...+.+.|.+..-.-+ ..+++.++..|+.++..|.|.+++.++.+. |+|.|-+-..+- +.. .+..
T Consensus 103 ~~~~~~~~~~~~~~v~~~~G~p~----~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~-G~D~iv~qG~eAGGH~g-~~~~ 176 (330)
T PF03060_consen 103 EEQLDVALEAKPDVVSFGFGLPP----PEVIERLHAAGIKVIPQVTSVREARKAAKA-GADAIVAQGPEAGGHRG-FEVG 176 (330)
T ss_dssp HHHHHHHHHS--SEEEEESSSC-----HHHHHHHHHTT-EEEEEESSHHHHHHHHHT-T-SEEEEE-TTSSEE----SSG
T ss_pred ccccccccccceEEEEeecccch----HHHHHHHHHcCCccccccCCHHHHHHhhhc-CCCEEEEeccccCCCCC-cccc
Confidence 34566677778889888655433 456788889999999999999999999997 999886653321 111 1222
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
.+..|++.++.. .+++||+.|||.+..++..++.+||+||.+|+.++-.+.
T Consensus 177 ~~~~L~~~v~~~----~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 177 STFSLLPQVRDA----VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp -HHHHHHHHHHH-----SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred ceeeHHHHHhhh----cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 456666654321 358999999999999999999999999999999886543
No 115
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.25 E-value=1.2e-05 Score=76.38 Aligned_cols=162 Identities=14% Similarity=0.231 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHH-HHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFE-NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~e-dL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (398)
+..++|+...+.|+++|-|-.-.+......+ .++.+|+. +++||+. |.=+..||- -|||+++.. ++|+-.+
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~-~~lPvil--fp~~~~~i~----~~aD~~~~~-sllns~~ 83 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKI-TNLPVIL--FPGNVNGLS----RYADAVFFM-SLLNSAD 83 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhh-cCCCEEE--ECCCccccC----cCCCEEEEE-EeecCCC
Confidence 4556778889999999988311111111222 23667875 8999986 444555543 589999885 4553222
Q ss_pred HHHHH----HHH---HHcCCcEEEE-------------------c--CCHHHHHHHh---ccCCCcEEeeccccCccccc
Q 015899 277 IRYMT----KIC---KLLGLTALVE-------------------V--HDEREMDRVL---GIEGIELIGINNRNLETFEV 325 (398)
Q Consensus 277 L~~Li----~~a---~~LGL~~LVE-------------------V--ht~eEl~rAl---~l~Ga~iIGINnRdL~tf~v 325 (398)
-.+++ +.+ +++|++++-| + .+.+|+.... +..|+++|=+-.-+-....+
T Consensus 84 ~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v 163 (205)
T TIGR01769 84 TYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPV 163 (205)
T ss_pred cchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCC
Confidence 22222 223 5677766321 1 2344433322 22355655442211122335
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
+.+...++.+. .+++++..+||+++++++.+.++|||+|+||
T Consensus 164 ~~e~i~~Vk~~--------~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKA--------SGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHh--------hCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 66666666554 2578999999999999999999999999998
No 116
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.24 E-value=0.0002 Score=69.07 Aligned_cols=193 Identities=12% Similarity=0.092 Sum_probs=127.0
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHH-HHHHHHc
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQ-IYYARTK 260 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~Q-I~eAr~~ 260 (398)
||| ++..+ .+..+..+.++++|++.+|+=.-++.|-- ++..++.+|+ ++|+=+-=-+.+|.+ |.....+
T Consensus 16 ~pS--il~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~P~~~i~~~~~a 90 (228)
T PRK08091 16 SVG--ILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRDQFEVAKACVAA 90 (228)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC---CCCEEEEeccCCHHHHHHHHHHh
Confidence 365 34433 35667788899999999999665655533 6677888863 566421112345554 5566788
Q ss_pred CcCEEEEeccCCChHHHHHHHHHHHHcCC--cEEEEc---CCHHHHHHHhccCCCcEE---eecc-ccCcccccC-hhhH
Q 015899 261 GADAVLLIAAVLPDLDIRYMTKICKLLGL--TALVEV---HDEREMDRVLGIEGIELI---GINN-RNLETFEVD-NSNT 330 (398)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL--~~LVEV---ht~eEl~rAl~l~Ga~iI---GINn-RdL~tf~vD-l~~t 330 (398)
|||.|.+-+..- .++.++++..+++|+ .+=+=+ ...+.++..+.. .+.| .+|. ..-..|..+ ++..
T Consensus 91 Gad~It~H~Ea~--~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~--vD~VLiMtV~PGfgGQ~f~~~~l~KI 166 (228)
T PRK08091 91 GADIVTLQVEQT--HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ--IDLIQILTLDPRTGTKAPSDLILDRV 166 (228)
T ss_pred CCCEEEEcccCc--ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHH
Confidence 999999987764 357889999999999 552222 356666666653 4543 3331 112233222 3334
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
.+|.+..... ..++.+-.-||| +.+.+.++.++|||.+++|++|.+.+|+.+.+++|.
T Consensus 167 ~~lr~~~~~~---~~~~~IeVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~ 224 (228)
T PRK08091 167 IQVENRLGNR---RVEKLISIDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWK 224 (228)
T ss_pred HHHHHHHHhc---CCCceEEEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHH
Confidence 4444332110 124667889999 688999999999999999999999999999888774
No 117
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.23 E-value=6.8e-06 Score=78.68 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCH------H-HHHHHHhcCCC-CcEEeccccCCHHHHHHHHHcCcCEEEEec
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF------E-NLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~------e-dL~~Ir~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
+..++++.+.+.|+++|-| +||. + .+..+++. .+ +||+- |.=++.|+ .-|||++++.
T Consensus 13 ~~~~~~~~~~~~gtdai~v-------GGS~~v~~~~~~~~~~ik~~-~~~~Pvil--fp~~~~~i----~~~aDa~l~~- 77 (219)
T cd02812 13 VDEEIAKLAEESGTDAIMV-------GGSDGVSSTLDNVVRLIKRI-RRPVPVIL--FPSNPEAV----SPGADAYLFP- 77 (219)
T ss_pred CHHHHHHHHHhcCCCEEEE-------CCccchhhhHHHHHHHHHHh-cCCCCEEE--eCCCcccc----CcCCCEEEEE-
Confidence 4567888899899999988 4554 1 23455654 55 89873 22344444 3689999885
Q ss_pred cCCChHHHHHHHH----HHH---H--cCCcEEEE----------------c---CCHHHHHHHhccCCCcEEeeccccCc
Q 015899 270 AVLPDLDIRYMTK----ICK---L--LGLTALVE----------------V---HDEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 270 aiL~~~~L~~Li~----~a~---~--LGL~~LVE----------------V---ht~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
++|+-.+-.+++. .+. . .+++++-| . .+.+++..- .+ -++.+|.---+|.
T Consensus 78 svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ay-A~-aae~~g~~ivyLe 155 (219)
T cd02812 78 SVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAY-AL-AAEYLGMPIVYLE 155 (219)
T ss_pred eeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHH-HH-HHHHcCCeEEEeC
Confidence 5554222333222 122 2 34554221 1 233443322 22 2355553322232
Q ss_pred --ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 322 --TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 322 --tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.-.+|.+...++.+.. .+++++..|||+|+++++.+.++|||+|+||+++++.
T Consensus 156 ~SG~~~~~e~I~~v~~~~-------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 156 YSGAYGPPEVVRAVKKVL-------GDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred CCCCcCCHHHHHHHHHhc-------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 2236666666665531 1578899999999999999999999999999999996
No 118
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.22 E-value=0.00012 Score=65.73 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCC--CCcEEeccccCC--------HHHHHHHHHcCcCEE
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVD--------AWQIYYARTKGADAV 265 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v--~lPVL~KDFIid--------~~QI~eAr~~GADaV 265 (398)
.....++++.+.++|+++|.++- +.++.+++..- ++||+.+=.--+ -.++.+|..+|||+|
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 34577888899999999999953 66777765412 489885432111 146778899999999
Q ss_pred EEeccCC---C--hHHHHH-HHHHHHH--cCCcEEEEcC-----CHHHHHHH----hccCCCcEEeeccccCcccccChh
Q 015899 266 LLIAAVL---P--DLDIRY-MTKICKL--LGLTALVEVH-----DEREMDRV----LGIEGIELIGINNRNLETFEVDNS 328 (398)
Q Consensus 266 LLiaaiL---~--~~~L~~-Li~~a~~--LGL~~LVEVh-----t~eEl~rA----l~l~Ga~iIGINnRdL~tf~vDl~ 328 (398)
++..... + .+.+.+ +-+.+.. .++.+++... +.+++..+ .+. |++.|-...-.. .-..|+.
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~-g~~~iK~~~~~~-~~~~~~~ 160 (201)
T cd00945 83 DVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA-GADFIKTSTGFG-GGGATVE 160 (201)
T ss_pred EEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh-CCCEEEeCCCCC-CCCCCHH
Confidence 9975532 2 233333 3344444 4899988775 66666654 233 777765543211 1123667
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
...++.+.. +.++.++..||+.+++++..+..+|++++.+|
T Consensus 161 ~~~~i~~~~------~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 161 DVKLMKEAV------GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHhc------ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 777776541 22567999999999999999999999999876
No 119
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.21 E-value=9.9e-05 Score=72.42 Aligned_cols=177 Identities=23% Similarity=0.260 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH-HhcCCCCcEEec---------cccCCH---HH
Q 015899 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV-RSAGVKCPLLCK---------EFIVDA---WQ 253 (398)
Q Consensus 187 SPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I-r~a~v~lPVL~K---------DFIid~---~Q 253 (398)
+|.+| .+||..+-+...++|++|+.. .+--++.+ +...-++|+|-| +- .+. ++
T Consensus 37 ~p~~g----l~d~e~~v~~v~~~g~dav~~---------~~G~~~~~~~~y~~dvplivkl~~~t~l~~~~-~~~~~~~~ 102 (265)
T COG1830 37 NPIEG----LEDPENIVAKVAEAGADAVAM---------TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDP-NDQVLVAT 102 (265)
T ss_pred CCccc----ccCHHHHHHHHHhcCCCEEEe---------cHhHHhhcCccccCCcCEEEEeccccccCCCc-ccceeeee
Confidence 45554 789999999999999999986 33334433 222237887632 11 111 26
Q ss_pred HHHHHHcCcCEEEEeccCCC---hH---HHHHHHHHHHHcCCcEEEEc------------CCHHHHH----HHhccCCCc
Q 015899 254 IYYARTKGADAVLLIAAVLP---DL---DIRYMTKICKLLGLTALVEV------------HDEREMD----RVLGIEGIE 311 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~---~~---~L~~Li~~a~~LGL~~LVEV------------ht~eEl~----rAl~l~Ga~ 311 (398)
+.+|..+|||+|-.-.-+-+ .+ ++.++.+.|+++||..++++ ++.+..- .+.++ |||
T Consensus 103 ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael-GAD 181 (265)
T COG1830 103 VEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL-GAD 181 (265)
T ss_pred HHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh-cCC
Confidence 88999999999977544433 22 35566677889999998843 4455544 55677 999
Q ss_pred EEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCC------HHHHHHHHHcCCCEEEEcccccCCCChH
Q 015899 312 LIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT------PDDIAYVQEAGVKAVLVGESIVKQDDPG 385 (398)
Q Consensus 312 iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t------~eD~~~l~~~GadaVLVGeaLmk~~dp~ 385 (398)
||=++- .-|.+...++...+ +++||..||=++ .+-...+.++|+.|+.+|.-|...++|.
T Consensus 182 IiK~~y------tg~~e~F~~vv~~~--------~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~ 247 (265)
T COG1830 182 IIKTKY------TGDPESFRRVVAAC--------GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPE 247 (265)
T ss_pred eEeecC------CCChHHHHHHHHhC--------CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChH
Confidence 998872 22446667777652 378888888887 2334567788999999999999999999
Q ss_pred HHHHhhh
Q 015899 386 KGITGLF 392 (398)
Q Consensus 386 ~~i~~L~ 392 (398)
..++.+.
T Consensus 248 ~m~~Ai~ 254 (265)
T COG1830 248 AMVKAIQ 254 (265)
T ss_pred HHHHHHH
Confidence 8776664
No 120
>PRK06852 aldolase; Validated
Probab=98.21 E-value=0.00011 Score=73.67 Aligned_cols=184 Identities=16% Similarity=0.146 Sum_probs=119.0
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEec----cccC-----CHH-----HHH
Q 015899 190 RGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCK----EFIV-----DAW-----QIY 255 (398)
Q Consensus 190 kG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~K----DFIi-----d~~-----QI~ 255 (398)
.|.+....||..+-+...++|++|+-. ..--++.......++|++-| .-+. ||+ .|.
T Consensus 52 ~~~~~gl~dp~~~i~~~~~~g~dav~~---------~~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVe 122 (304)
T PRK06852 52 EGIAKDDADPEHLFRIASKAKIGVFAT---------QLGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVE 122 (304)
T ss_pred ccCCcccCCHHHHHHHHHhcCCCEEEe---------CHHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHH
Confidence 334667789999999999999999887 23333333222246787632 1112 232 388
Q ss_pred HHHHcC------cCEEEEeccCCCh------HHHHHHHHHHHHcCCcEEEEcC-------CHHH-------HHHHhccCC
Q 015899 256 YARTKG------ADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH-------DERE-------MDRVLGIEG 309 (398)
Q Consensus 256 eAr~~G------ADaVLLiaaiL~~------~~L~~Li~~a~~LGL~~LVEVh-------t~eE-------l~rAl~l~G 309 (398)
+|..+| ||+|-.-.-+-++ .++.++.+.|++.||-+|+.+. +..+ ...+.++ |
T Consensus 123 eAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaEL-G 201 (304)
T PRK06852 123 QVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACL-G 201 (304)
T ss_pred HHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHH-c
Confidence 999988 7788775554442 2355666778889999987443 2222 3455677 9
Q ss_pred CcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCC-HH----HHHHHHH-cCCCEEEEcccccCCCC
Q 015899 310 IELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PD----DIAYVQE-AGVKAVLVGESIVKQDD 383 (398)
Q Consensus 310 a~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t-~e----D~~~l~~-~GadaVLVGeaLmk~~d 383 (398)
||+|=++-.. ...+-|.+...++.... ..++||..||=++ .+ .+....+ +|+.|+.+|.-+...++
T Consensus 202 ADIVKv~y~~-~~~~g~~e~f~~vv~~~-------g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 202 ADFVKVNYPK-KEGANPAELFKEAVLAA-------GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CCEEEecCCC-cCCCCCHHHHHHHHHhC-------CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 9999988321 12224556666766541 1456777777774 22 3344556 89999999999999999
Q ss_pred h--HHHHHhh
Q 015899 384 P--GKGITGL 391 (398)
Q Consensus 384 p--~~~i~~L 391 (398)
| .+.++.|
T Consensus 274 p~~~~~~~Ai 283 (304)
T PRK06852 274 DEAVRMCNAI 283 (304)
T ss_pred chHHHHHHHH
Confidence 8 7555444
No 121
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.20 E-value=0.00026 Score=68.24 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=126.0
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcC----CCCHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHH
Q 015899 186 ASPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYF----KGSFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYART 259 (398)
Q Consensus 186 aSPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F----~Gs~edL~~Ir~a~v~lPVL~KDFIid~~-QI~eAr~ 259 (398)
-||| ++..+ .+..+..+.++. |++.||+=--.+.| .=++..++.+|+. +++|+=+-=-+.+|. .|.....
T Consensus 5 I~pS--il~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~-t~~~~DvHLMv~~P~~~i~~~~~ 80 (229)
T PRK09722 5 ISPS--LMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKL-ASKPLDVHLMVTDPQDYIDQLAD 80 (229)
T ss_pred EEee--hhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhc-CCCCeEEEEEecCHHHHHHHHHH
Confidence 4676 34433 244445566666 89999995444444 2367889999986 788852211223454 4666678
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEE---eecc-ccCcccccC-hhhHH
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELI---GINN-RNLETFEVD-NSNTK 331 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iI---GINn-RdL~tf~vD-l~~t~ 331 (398)
+|||.|.+-+....+ .+.++++.++++|+.+=+=++ ..+.++..+.. .+.| ++|. ..-..|..+ ++...
T Consensus 81 aGad~it~H~Ea~~~-~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~--vD~VLvMsV~PGf~GQ~fi~~~l~KI~ 157 (229)
T PRK09722 81 AGADFITLHPETING-QAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHL--LDKITVMTVDPGFAGQPFIPEMLDKIA 157 (229)
T ss_pred cCCCEEEECccCCcc-hHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHh--cCEEEEEEEcCCCcchhccHHHHHHHH
Confidence 899999988776542 477899999999998844443 55566655542 4533 4441 112223222 33333
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc-ccC-CCChHHHHHhhhc
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES-IVK-QDDPGKGITGLFG 393 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea-Lmk-~~dp~~~i~~L~~ 393 (398)
+|.+.+... ..++.+-.-||| +.+.+..+.++|||.+++|++ |.+ .+|+.+.++.|..
T Consensus 158 ~lr~~~~~~---~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 158 ELKALRERN---GLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred HHHHHHHhc---CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence 333321110 124678889999 588999999999999999965 998 5788888887753
No 122
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.18 E-value=7.9e-05 Score=73.40 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=89.6
Q ss_pred CCCcEEeccccCCHHH----HHHHHHcC-cCEEEEecc----------CC-ChHHHHHHHHHHHHc-CCcEEEEcC-CHH
Q 015899 238 VKCPLLCKEFIVDAWQ----IYYARTKG-ADAVLLIAA----------VL-PDLDIRYMTKICKLL-GLTALVEVH-DER 299 (398)
Q Consensus 238 v~lPVL~KDFIid~~Q----I~eAr~~G-ADaVLLiaa----------iL-~~~~L~~Li~~a~~L-GL~~LVEVh-t~e 299 (398)
.+.||+..=+..++.+ ...+..+| +|+|=|... ++ +.+.+.++++..++. ++.++|-+. +.+
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 4788864322223332 22334678 999988442 22 234578888877764 777777655 333
Q ss_pred ---HH-HHHhccCCCcEEeeccc------cCcccccC-------------hhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 300 ---EM-DRVLGIEGIELIGINNR------NLETFEVD-------------NSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 300 ---El-~rAl~l~Ga~iIGINnR------dL~tf~vD-------------l~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
++ +.+.+. |++.|-+.|+ ++.+.... .....+++..++. ..++++|+.|||.
T Consensus 170 ~~~~~a~~l~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~----~~~ipvi~~GGI~ 244 (301)
T PRK07259 170 DIVEIAKAAEEA-GADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQ----AVDIPIIGMGGIS 244 (301)
T ss_pred hHHHHHHHHHHc-CCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHH----hCCCCEEEECCCC
Confidence 33 344454 8887765443 22211110 0012233333221 1268999999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 389 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 389 (398)
|++|+.++..+|||+|-||++++..++....++
T Consensus 245 ~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~ 277 (301)
T PRK07259 245 SAEDAIEFIMAGASAVQVGTANFYDPYAFPKII 277 (301)
T ss_pred CHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHH
Confidence 999999999999999999999999776555543
No 123
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.16 E-value=0.00012 Score=71.99 Aligned_cols=148 Identities=15% Similarity=0.070 Sum_probs=93.6
Q ss_pred CCCcEEeccccCCHHHHHHHH----Hc--CcCEEEEeccC----------C-ChHHHHHHHHHHHH-cCCcEEEEcC-CH
Q 015899 238 VKCPLLCKEFIVDAWQIYYAR----TK--GADAVLLIAAV----------L-PDLDIRYMTKICKL-LGLTALVEVH-DE 298 (398)
Q Consensus 238 v~lPVL~KDFIid~~QI~eAr----~~--GADaVLLiaai----------L-~~~~L~~Li~~a~~-LGL~~LVEVh-t~ 298 (398)
.+.|++..=+.-++.++.++. .+ +||+|-|.... + +.+.+.++++..++ .++.++|-+. +.
T Consensus 89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~ 168 (300)
T TIGR01037 89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNV 168 (300)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCCh
Confidence 356876544444555443331 22 49999998763 1 33457888888775 5888888886 43
Q ss_pred HH---H-HHHhccCCCcEEeeccccC------cccccC-------------hhhHHHHhhhhcccccccCCceEEEecCC
Q 015899 299 RE---M-DRVLGIEGIELIGINNRNL------ETFEVD-------------NSNTKKLLEGERGEIIRQKNIIVVGESGL 355 (398)
Q Consensus 299 eE---l-~rAl~l~Ga~iIGINnRdL------~tf~vD-------------l~~t~~L~~~i~~~~i~~~~v~vVAESGI 355 (398)
+| + +.+.++ |++.|-+.|+.. .+.... ...+.+.+..++. ..++++|+.|||
T Consensus 169 ~~~~~~a~~l~~~-G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~----~~~ipvi~~GGI 243 (300)
T TIGR01037 169 TDITEIAKAAEEA-GADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYK----MVDIPIIGVGGI 243 (300)
T ss_pred hhHHHHHHHHHHc-CCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 33 3 344454 999887654311 111110 0011222222211 125899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015899 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 356 ~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
.|++|+.++..+|||+|.||++++..++....+++
T Consensus 244 ~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 244 TSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred CCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHH
Confidence 99999999999999999999999988876555443
No 124
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=0.00013 Score=69.13 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHH
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (398)
.+..+++++..++|..+|=|--. -.+.++.++.+++. .+--++-=.-++++.|+.+|..+||+-++- -.++
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~---tp~a~~~I~~l~~~-~~~~~vGAGTVl~~e~a~~ai~aGA~FivS--P~~~--- 86 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR---TPAALDAIRAVAAE-VEEAIVGAGTILNAKQFEDAAKAGSRFIVS--PGTT--- 86 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC---CccHHHHHHHHHHH-CCCCEEeeEeCcCHHHHHHHHHcCCCEEEC--CCCC---
Confidence 36778999999999998887321 12466777777764 221134455689999999999999998653 3344
Q ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 277 IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 277 L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
.+++++|++.|+..+=-+-|..|+..|.++ |+++|=+-.-+. +. .++..+.|..- + .++.++.-|||
T Consensus 87 -~~vi~~a~~~~i~~iPG~~TptEi~~A~~~-Ga~~vK~FPa~~--~G-G~~yikal~~p-----l--p~~~l~ptGGV- 153 (201)
T PRK06015 87 -QELLAAANDSDVPLLPGAATPSEVMALREE-GYTVLKFFPAEQ--AG-GAAFLKALSSP-----L--AGTFFCPTGGI- 153 (201)
T ss_pred -HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECCchh--hC-CHHHHHHHHhh-----C--CCCcEEecCCC-
Confidence 468889999999999999999999999998 999987654221 10 12233333321 2 36889999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+++++....++|+..++.|+.|++..
T Consensus 154 ~~~n~~~~l~ag~~~~~ggs~l~~~~ 179 (201)
T PRK06015 154 SLKNARDYLSLPNVVCVGGSWVAPKE 179 (201)
T ss_pred CHHHHHHHHhCCCeEEEEchhhCCch
Confidence 77999999999998888899998653
No 125
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.15 E-value=0.00016 Score=69.43 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=129.9
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc-CCCCc--EEeccccCCHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-GVKCP--LLCKEFIVDAWQI 254 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a-~v~lP--VL~KDFIid~~QI 254 (398)
.||+=+.-.+| .+..+++++..++|-.+|=|= ... .+.++.++.+++. .-..| ++-=.-|+++.|+
T Consensus 16 ~vi~Vvr~~~~--------~~a~~~~~al~~gGi~~iEiT-~~t--p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a 84 (222)
T PRK07114 16 GMVPVFYHADV--------EVAKKVIKACYDGGARVFEFT-NRG--DFAHEVFAELVKYAAKELPGMILGVGSIVDAATA 84 (222)
T ss_pred CEEEEEEcCCH--------HHHHHHHHHHHHCCCCEEEEe-CCC--CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHH
Confidence 46666644333 367889999999999988872 211 2466677766532 01234 4556678999999
Q ss_pred HHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 255 YYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
..|..+||+-++- -.++ .+++++|++.|+..+=-|-|..|+..|+++ |+++|=+-.-+ .+ .+...+.|.
T Consensus 85 ~~a~~aGA~FiVs--P~~~----~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~-Ga~~vKlFPA~--~~--G~~~ikal~ 153 (222)
T PRK07114 85 ALYIQLGANFIVT--PLFN----PDIAKVCNRRKVPYSPGCGSLSEIGYAEEL-GCEIVKLFPGS--VY--GPGFVKAIK 153 (222)
T ss_pred HHHHHcCCCEEEC--CCCC----HHHHHHHHHcCCCEeCCCCCHHHHHHHHHC-CCCEEEECccc--cc--CHHHHHHHh
Confidence 9999999998653 3344 458889999999999999999999999998 99998776433 12 244444443
Q ss_pred hhhcccccccCCceEEEecCCCC-HHHHHHHHHcCCCEEEEcccccCCC
Q 015899 335 EGERGEIIRQKNIIVVGESGLFT-PDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t-~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
.- + .++.++.-|||+. .+++....++|+.+|-+|+.|+..+
T Consensus 154 ~p-----~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~ 195 (222)
T PRK07114 154 GP-----M--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKE 195 (222)
T ss_pred cc-----C--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCcc
Confidence 32 2 3689999999974 4899999999999999999998644
No 126
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.13 E-value=2.1e-05 Score=77.60 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=73.8
Q ss_pred HHHHHHHHHHH-cC--CcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEe
Q 015899 276 DIRYMTKICKL-LG--LTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE 352 (398)
Q Consensus 276 ~L~~Li~~a~~-LG--L~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAE 352 (398)
.+.+.++.++. .. ..+.|||.|.+|+..|+++ |+|+|...|- +++...++++.++. . ..++.+.++
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~-GaDiI~LDn~-------~~e~l~~~v~~~~~-~--~~~~~ieAs 235 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA-GADIVMCDNM-------SVEEIKEVVAYRNA-N--YPHVLLEAS 235 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc-CCCEEEECCC-------CHHHHHHHHHHhhc-c--CCCeEEEEE
Confidence 45677777775 33 6799999999999999997 9999996542 45555666554211 1 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 353 SGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 353 SGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
||| |++.+..+.+.|+|.+.+|......+
T Consensus 236 GgI-t~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 236 GNI-TLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred CCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 999 99999999999999999998877543
No 127
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.13 E-value=8.1e-05 Score=74.16 Aligned_cols=146 Identities=17% Similarity=0.240 Sum_probs=100.7
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCcCEEEEeccC--------------CC-hHHHHHHHHHHH-HcCCcEEEEcC--
Q 015899 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------LP-DLDIRYMTKICK-LLGLTALVEVH-- 296 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L~-~~~L~~Li~~a~-~LGL~~LVEVh-- 296 (398)
+.|+...=+.-++.++.+| ..+|+|+|=|.... +. ++.+.++++..+ ..++.+.|-++
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 5677655555677655544 46799999886553 22 233566666655 35777766552
Q ss_pred ------CHHHHH-HHhccCCCcEEeeccccCcc-c--ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHH-
Q 015899 297 ------DEREMD-RVLGIEGIELIGINNRNLET-F--EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ- 365 (398)
Q Consensus 297 ------t~eEl~-rAl~l~Ga~iIGINnRdL~t-f--~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~- 365 (398)
+..++- ++.+. |++.|-+..|.... + ..+++...++.+. .++++++-|||.|++|+.++.
T Consensus 142 ~~~~~~~~~~~a~~l~~~-G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~--------~~ipvi~nGgI~~~~da~~~l~ 212 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDA-GAQAVTLHGRTRAQGYSGEANWDIIARVKQA--------VRIPVIGNGDIFSPEDAKAMLE 212 (319)
T ss_pred cCCCcchHHHHHHHHHHh-CCCEEEEEcccccccCCCchhHHHHHHHHHc--------CCCcEEEeCCCCCHHHHHHHHH
Confidence 233443 44454 99999988775432 2 3456666666553 258999999999999999999
Q ss_pred HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 366 EAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 366 ~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
..|||+|.||.+++..++....+++.+.
T Consensus 213 ~~gad~VmigR~~l~~P~l~~~~~~~~~ 240 (319)
T TIGR00737 213 TTGCDGVMIGRGALGNPWLFRQIEQYLT 240 (319)
T ss_pred hhCCCEEEEChhhhhCChHHHHHHHHHh
Confidence 6799999999999999988887776654
No 128
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.12 E-value=2.5e-05 Score=75.09 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCH----HH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF----EN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~----ed----L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia 269 (398)
...+.++...+.|+++|-| +||. ++ +..+|+. .+||+- |.=++.||- -|||+++..
T Consensus 15 ~~~~~~~~~~~~gtdai~v-------GGS~~vt~~~~~~~v~~ik~~--~lPvil--fp~~~~~i~----~~aDa~l~~- 78 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILI-------GGSQGVTYEKTDTLIEALRRY--GLPIIL--FPSNPTNVS----RDADALFFP- 78 (223)
T ss_pred ccHHHHHHHHhcCCCEEEE-------cCCCcccHHHHHHHHHHHhcc--CCCEEE--eCCCccccC----cCCCEEEEE-
Confidence 3567888888999999988 4554 33 3556764 599875 555555543 589999885
Q ss_pred cCCChHHHHHH-------HHHHHHcCCcEEEE-------------------c-CCHHHHHHHhccCCCcEEeeccccC--
Q 015899 270 AVLPDLDIRYM-------TKICKLLGLTALVE-------------------V-HDEREMDRVLGIEGIELIGINNRNL-- 320 (398)
Q Consensus 270 aiL~~~~L~~L-------i~~a~~LGL~~LVE-------------------V-ht~eEl~rAl~l~Ga~iIGINnRdL-- 320 (398)
++|+-.+-.++ +...+.++++++-| + .+.+|+..+..+ ..++.|..--=|
T Consensus 79 svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~l-A~~~~g~~~vYlE~ 157 (223)
T TIGR01768 79 SVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAM-AEEMLGMPIIYLEA 157 (223)
T ss_pred EeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHH-HHHHcCCcEEEEEe
Confidence 44532222222 22234456666321 2 455666555554 334444431101
Q ss_pred ---cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 321 ---ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 321 ---~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
..-.++.+...++.+.. .+++++..|||+++++++.+.++|||+|+||+.+.+.
T Consensus 158 gs~~g~~v~~e~i~~v~~~~-------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 158 GSGAPEPVPPELVAEVKKVL-------DKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred cCCCCCCcCHHHHHHHHHHc-------CCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 11123455555554431 2577888999999999999999999999999999986
No 129
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.10 E-value=0.00021 Score=70.77 Aligned_cols=147 Identities=14% Similarity=0.079 Sum_probs=92.9
Q ss_pred CCcEEeccccC-CHHHHHH----HHHcCcCEEEEeccCC--------------ChHHHHHHHHHHHH-cCCcEEEEcC--
Q 015899 239 KCPLLCKEFIV-DAWQIYY----ARTKGADAVLLIAAVL--------------PDLDIRYMTKICKL-LGLTALVEVH-- 296 (398)
Q Consensus 239 ~lPVL~KDFIi-d~~QI~e----Ar~~GADaVLLiaaiL--------------~~~~L~~Li~~a~~-LGL~~LVEVh-- 296 (398)
+.|++..=+.- ++.+..+ +...|||+|=|....- +++.+.++++..++ .++.++|-++
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~ 178 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN 178 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 57887555444 5543222 2346999999977742 23457888877764 5778888776
Q ss_pred --CHHHH-HHHhccCCCcEEeeccccCcccccC------------------------hhhHHHHhhhhcccccccCCceE
Q 015899 297 --DEREM-DRVLGIEGIELIGINNRNLETFEVD------------------------NSNTKKLLEGERGEIIRQKNIIV 349 (398)
Q Consensus 297 --t~eEl-~rAl~l~Ga~iIGINnRdL~tf~vD------------------------l~~t~~L~~~i~~~~i~~~~v~v 349 (398)
+..++ +.+.+. |++-|-+.|+-.....+| ...+.+.+..++. .+ +.++++
T Consensus 179 ~~~~~~~a~~~~~~-Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~-~~-~~~ipI 255 (299)
T cd02940 179 ITDIREIARAAKEG-GADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR-AP-EPGLPI 255 (299)
T ss_pred chhHHHHHHHHHHc-CCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH-hc-CCCCcE
Confidence 23344 445564 998776554332211111 1122333333221 11 236899
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHH
Q 015899 350 VGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGI 388 (398)
Q Consensus 350 VAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i 388 (398)
|+-|||.+.+|+.++..+||++|.||+++|. .++....+
T Consensus 256 ig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i 295 (299)
T cd02940 256 SGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDM 295 (299)
T ss_pred EEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHH
Confidence 9999999999999999999999999999988 66654443
No 130
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.09 E-value=0.00014 Score=69.19 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEe----ccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC----KEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~----KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+..++++.... ....+-|-| +-|+..++..++.+|+...+.||++ -| ++.+-...+..+|||.+.+-+.. +
T Consensus 17 ~a~~l~~~l~~-~v~~~kvG~-~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~D--i~~~v~~~~~~~Gad~vTvH~~a-~ 91 (216)
T PRK13306 17 SAIEDAKKVAE-EVDIIEVGT-ILLLAEGMKAVRVLRALYPDKIIVADTKIAD--AGKILAKMAFEAGADWVTVICAA-H 91 (216)
T ss_pred HHHHHHHHccc-cCCEEEECh-HHHHHhCHHHHHHHHHHCCCCEEEEEEeecC--CcHHHHHHHHHCCCCEEEEeCCC-C
Confidence 34455554433 235555543 4455667888999987534788874 34 34443335778999999997643 5
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEE----eeccccCcccccChhhHHHHhhhhcccccccCC
Q 015899 274 DLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELI----GINNRNLETFEVDNSNTKKLLEGERGEIIRQKN 346 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iI----GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~ 346 (398)
+..++..++.++..|+.+.|.+- +.++++..+.+ +...+ +++.- +..-....+....+.+. ...+
T Consensus 92 ~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~-~~~~~vl~~a~~~~-~~G~v~s~~~~~~ir~~------~~~~ 163 (216)
T PRK13306 92 IPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDA-GISQVIYHRSRDAQ-LAGVAWGEKDLNKVKKL------SDMG 163 (216)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcC-Chhhhhhhhhhhhh-hcCCCCCHHHHHHHHHH------hcCC
Confidence 66699999988888887766664 55666554553 33322 22211 11111112222222221 1134
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 347 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
..+..-+|| +++.+..+.+.|+|.++||++|++++||.++++++..
T Consensus 164 ~~i~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~ 209 (216)
T PRK13306 164 FKVSVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKD 209 (216)
T ss_pred CeEEEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 435567999 6777777888899999999999999999999998864
No 131
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.08 E-value=0.00013 Score=68.25 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCCcEEeccccCCHHHHH----HHHHcCcCEEEEeccC--------------C-ChHHHHHHHHHHHH-cCCcEEEEcC-
Q 015899 238 VKCPLLCKEFIVDAWQIY----YARTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEVH- 296 (398)
Q Consensus 238 v~lPVL~KDFIid~~QI~----eAr~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~~LVEVh- 296 (398)
.+.|++..=..-++.+.. .+..+|+|+|=|.+.. + ....+.++++..++ .++.+.+-+.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 466776433333454333 3446799999887543 2 23346677766654 5555555432
Q ss_pred ------CHHHHH-HHhccCCCcEEeeccccCcc---cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH
Q 015899 297 ------DEREMD-RVLGIEGIELIGINNRNLET---FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366 (398)
Q Consensus 297 ------t~eEl~-rAl~l~Ga~iIGINnRdL~t---f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 366 (398)
+..++- ...++ |++.|-+..|.... -..+++...++.+. .++++++-|||.+++|+.++.+
T Consensus 133 ~~~~~~~~~~~~~~l~~~-Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~--------~~ipvi~~Ggi~~~~d~~~~l~ 203 (231)
T cd02801 133 GWDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDYIAEIKEA--------VSIPVIANGDIFSLEDALRCLE 203 (231)
T ss_pred ccCCchHHHHHHHHHHHh-CCCEEEECCCCHHHcCCCCCCHHHHHHHHhC--------CCCeEEEeCCCCCHHHHHHHHH
Confidence 222332 33344 88999888775322 23466666665543 3689999999999999999999
Q ss_pred c-CCCEEEEcccccCCCChHHHHHhh
Q 015899 367 A-GVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 367 ~-GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
. |+|+|.+|.+++..++....+++.
T Consensus 204 ~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 204 QTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred hcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 8 899999999999999877776543
No 132
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00046 Score=65.20 Aligned_cols=193 Identities=17% Similarity=0.231 Sum_probs=125.8
Q ss_pred cCCCCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCc-EE-eccccCCHHH-HHH
Q 015899 185 KASPSRGILREDF-DPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCP-LL-CKEFIVDAWQ-IYY 256 (398)
Q Consensus 185 raSPSkG~i~~~~-dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lP-VL-~KDFIid~~Q-I~e 256 (398)
+-+|| +++.+| +..+-++.+..+||+.|++=.=++.|-- +.--+..+|+. +..| .+ |-=-+..|.| |.+
T Consensus 6 ~I~PS--IL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~-~~~~~ffD~HmMV~~Peq~V~~ 82 (224)
T KOG3111|consen 6 KIAPS--ILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKH-TGADPFFDVHMMVENPEQWVDQ 82 (224)
T ss_pred eechh--hhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhc-cCCCcceeEEEeecCHHHHHHH
Confidence 34576 455544 5667788899999999999655555533 23345666765 4443 22 2223566776 556
Q ss_pred HHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEEee--ccc--cCcccccC-hh
Q 015899 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGI--NNR--NLETFEVD-NS 328 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iIGI--NnR--dL~tf~vD-l~ 328 (398)
-..+||+-+-.-...-.+ ..+++++.++.||.+=+-+. ..+.++..++ -.|++=| -+- .-..|--| +.
T Consensus 83 ~a~agas~~tfH~E~~q~--~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGGQkFme~mm~ 158 (224)
T KOG3111|consen 83 MAKAGASLFTFHYEATQK--PAELVEKIREKGMKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGGQKFMEDMMP 158 (224)
T ss_pred HHhcCcceEEEEEeeccC--HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCchhhhHHHHHH
Confidence 678899998887766543 78999999999999866554 4455554443 2343322 211 12233222 22
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
....|... + .+..+=.-||+ +++.+.++.++||+.++.|++++++.||.+.|+.|.
T Consensus 159 KV~~lR~k-----y--p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 159 KVEWLREK-----Y--PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLR 214 (224)
T ss_pred HHHHHHHh-----C--CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHH
Confidence 23333322 2 13333378999 999999999999999999999999999999998774
No 133
>PRK14057 epimerase; Provisional
Probab=98.04 E-value=0.00068 Score=66.42 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=126.4
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHcCCcEEEEeccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHH-HHHHHHHc
Q 015899 187 SPSRGILRED-FDPVEIARSYEKGGAACLSILTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAW-QIYYARTK 260 (398)
Q Consensus 187 SPSkG~i~~~-~dp~~iA~aY~~~GA~aISVLTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~-QI~eAr~~ 260 (398)
||| ++..+ .+..+..+.++++|++.||+=.-++.|-- +++.++.+|+ ++|+=+-=-+.+|. .|.+-..+
T Consensus 23 spS--il~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~---~~p~DvHLMV~~P~~~i~~~~~a 97 (254)
T PRK14057 23 SVG--ILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ---TFIKDVHLMVADQWTAAQACVKA 97 (254)
T ss_pred Eee--hhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc---CCCeeEEeeeCCHHHHHHHHHHh
Confidence 466 34443 35667788899999999999665555532 6788888864 46631111122454 46666789
Q ss_pred CcCEEEEeccCCChHHHHHHHHHHHHcCCc---------EEE--Ec-CCHHHHHHHhccCCCcEE---eecc-ccCcccc
Q 015899 261 GADAVLLIAAVLPDLDIRYMTKICKLLGLT---------ALV--EV-HDEREMDRVLGIEGIELI---GINN-RNLETFE 324 (398)
Q Consensus 261 GADaVLLiaaiL~~~~L~~Li~~a~~LGL~---------~LV--EV-ht~eEl~rAl~l~Ga~iI---GINn-RdL~tf~ 324 (398)
|||.|.+-+..-. .+.+.++.++++|+. +=+ -- ...+.++..+.. .+.| .+|. ..-..|.
T Consensus 98 Gad~It~H~Ea~~--~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~--vD~VLvMtV~PGfgGQ~Fi 173 (254)
T PRK14057 98 GAHCITLQAEGDI--HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD--VEVIQLLAVNPGYGSKMRS 173 (254)
T ss_pred CCCEEEEeecccc--CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh--CCEEEEEEECCCCCchhcc
Confidence 9999999877543 478888999999872 322 22 356666666653 4543 4441 1223333
Q ss_pred cC-hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 325 VD-NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 325 vD-l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.+ ++...++.+.+... ..++.+-.-||| +.+.+..+.++|+|.+++|++|.+.+|+.+.+++|..
T Consensus 174 ~~~l~KI~~lr~~~~~~---~~~~~IeVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~ 239 (254)
T PRK14057 174 SDLHERVAQLLCLLGDK---REGKIIVIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRA 239 (254)
T ss_pred HHHHHHHHHHHHHHHhc---CCCceEEEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 22 33333333332110 124678889999 7889999999999999999999999999988888753
No 134
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.04 E-value=0.00024 Score=69.51 Aligned_cols=177 Identities=20% Similarity=0.235 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCC---CCHHHHHHHHhcCCCCcEE---eccccCCHHHHH---HHHHcC-----
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLL---CKEFIVDAWQIY---YARTKG----- 261 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~---Gs~edL~~Ir~a~v~lPVL---~KDFIid~~QI~---eAr~~G----- 261 (398)
.-++..+.++.+..|+..+-|-.-..-+. |....+..+... .+-+| ..-+-- +.-|. .||+++
T Consensus 26 y~s~~~~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~--~~~~LPNTaGc~tA-~EAv~~A~laRe~~~~~~~ 102 (267)
T CHL00162 26 YKSLKDAIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWN--KLWLLPNTAGCQTA-EEAIRMAFLGRELAKQLGQ 102 (267)
T ss_pred CCCHHHHHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchh--ccEECCcCcCCCCH-HHHHHHHHHHHHHhccccc
Confidence 44888999999999999887764333322 334455666532 33344 111111 11122 345554
Q ss_pred --cCEEEEec----c-CCChHHHHHHHHHHHHc---CCcEEEEcC-CHHHHHHHhccCCCcEE-------eeccccCccc
Q 015899 262 --ADAVLLIA----A-VLPDLDIRYMTKICKLL---GLTALVEVH-DEREMDRVLGIEGIELI-------GINNRNLETF 323 (398)
Q Consensus 262 --ADaVLLia----a-iL~~~~L~~Li~~a~~L---GL~~LVEVh-t~eEl~rAl~l~Ga~iI-------GINnRdL~tf 323 (398)
-|-|=|=+ . +++ |-.++++.++.| |..+|.=++ |+--.++..++ |+..| |.| +.+.+
T Consensus 103 ~~~~wIKLEVi~D~~~LlP--D~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-Gc~aVMPlgsPIGSg-~Gl~n- 177 (267)
T CHL00162 103 EDNNFVKLEVISDPKYLLP--DPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDI-GCATVMPLGSPIGSG-QGLQN- 177 (267)
T ss_pred cCCCeEEEEEeCCCcccCC--ChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHc-CCeEEeeccCcccCC-CCCCC-
Confidence 67776622 2 233 345667777754 999998776 66666777776 88654 443 44432
Q ss_pred ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 324 ~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
....+-+++. .++++|.-.||.+++|+..++++|+||||+.++|++++||.+..+.+
T Consensus 178 ---~~~l~~i~e~--------~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~ 234 (267)
T CHL00162 178 ---LLNLQIIIEN--------AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAM 234 (267)
T ss_pred ---HHHHHHHHHc--------CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHH
Confidence 2232333332 35889999999999999999999999999999999999996665544
No 135
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.01 E-value=0.00014 Score=73.99 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCC-cEEEEeccCCcCCCCHHHHHHHHhcCCCCcE-----EeccccCCHHHHHHHHHcCcCEEEEeccCC-
Q 015899 200 VEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKCPL-----LCKEFIVDAWQIYYARTKGADAVLLIAAVL- 272 (398)
Q Consensus 200 ~~iA~aY~~~GA-~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPV-----L~KDFIid~~QI~eAr~~GADaVLLiaaiL- 272 (398)
..+|++..+.|. -++|-.. .-+++++.... ..+.|+ ..||--+....+..|..+|++++.|-+-..
T Consensus 84 ~~~AraA~~~gi~~~lss~s-----~~s~e~v~~~~--~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~ 156 (344)
T cd02922 84 LNLARAAGKHGILQMISTNA-----SCSLEEIVDAR--PPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPV 156 (344)
T ss_pred HHHHHHHHHcCCCEEecCcc-----cCCHHHHHHhc--CCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 688999999884 3444322 23666654321 123565 245544455578888999999999854321
Q ss_pred -C---------------------------------------h-HHHHHHHHHHHHcCCc-EEEEcCCHHHHHHHhccCCC
Q 015899 273 -P---------------------------------------D-LDIRYMTKICKLLGLT-ALVEVHDEREMDRVLGIEGI 310 (398)
Q Consensus 273 -~---------------------------------------~-~~L~~Li~~a~~LGL~-~LVEVht~eEl~rAl~l~Ga 310 (398)
. . ...+.+-......++. ++-+|.+.+++.++.++ |+
T Consensus 157 ~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~-G~ 235 (344)
T cd02922 157 LGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY-GV 235 (344)
T ss_pred cCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc-CC
Confidence 0 0 0112222223345555 46688999999999997 99
Q ss_pred cEEeeccccCcccccChhhHHHHhhhhccc--ccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 311 ELIGINNRNLETFEVDNSNTKKLLEGERGE--IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 311 ~iIGINnRdL~tf~vDl~~t~~L~~~i~~~--~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
+.|-+.|..-..+.....+...| ..+... .+ ...+.+|+-|||.+..|+.++..+||++|.||+.++...-
T Consensus 236 d~I~vsnhgG~~~d~~~~~~~~L-~~i~~~~~~~-~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 236 DGIVLSNHGGRQLDTAPAPIEVL-LEIRKHCPEV-FDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred CEEEEECCCcccCCCCCCHHHHH-HHHHHHHHHh-CCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence 98777665433322222221112 111110 01 1358899999999999999999999999999999987543
No 136
>PRK06801 hypothetical protein; Provisional
Probab=98.01 E-value=0.00073 Score=67.21 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=99.7
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc-----------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV----------------- 295 (398)
.++|| |.-|-..+...+.+|...|.+.|.++.+-++.++ .+++.++|+..|+++=.|+
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~ 152 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADS 152 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCccc
Confidence 57897 5777777888899999999999999999998543 5667788888887762222
Q ss_pred --C-CHHHHHHHhccCCCcEEeeccccCcc-----cccChhhHHHHhhhhcccccccCCceEEEecC--CCCHHHHHHHH
Q 015899 296 --H-DEREMDRVLGIEGIELIGINNRNLET-----FEVDNSNTKKLLEGERGEIIRQKNIIVVGESG--LFTPDDIAYVQ 365 (398)
Q Consensus 296 --h-t~eEl~rAl~l~Ga~iIGINnRdL~t-----f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESG--I~t~eD~~~l~ 365 (398)
+ +++|+.+..+..|+|.+++.--+.++ -..|++...++.+.+ ++++|.-|| | +.+++.++.
T Consensus 153 ~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--------~~PLVlHGGSgi-~~e~~~~~i 223 (286)
T PRK06801 153 AKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--------GLPLVLHGGSGI-SDADFRRAI 223 (286)
T ss_pred ccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--------CCCEEEECCCCC-CHHHHHHHH
Confidence 2 44788888743499999995333332 135788777775541 344555554 9 588999999
Q ss_pred HcCCCEEEEcccccCC
Q 015899 366 EAGVKAVLVGESIVKQ 381 (398)
Q Consensus 366 ~~GadaVLVGeaLmk~ 381 (398)
++|++.|=|++.|...
T Consensus 224 ~~Gi~KINv~T~~~~a 239 (286)
T PRK06801 224 ELGIHKINFYTGMSQA 239 (286)
T ss_pred HcCCcEEEehhHHHHH
Confidence 9999999999998764
No 137
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.97 E-value=0.00064 Score=68.24 Aligned_cols=145 Identities=13% Similarity=0.119 Sum_probs=97.3
Q ss_pred CcEEeccccCCHHHHHHH----HHcCcCEEEEeccC--------------CC-hHHHHHHHHHHHH-cCCcEEEEc----
Q 015899 240 CPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------LP-DLDIRYMTKICKL-LGLTALVEV---- 295 (398)
Q Consensus 240 lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L~-~~~L~~Li~~a~~-LGL~~LVEV---- 295 (398)
.|+...=|.-+|.++.+| ...|+|.|=|.... +. ++.+.++++..+. .+..+.+-+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 344333344555554333 24577777776552 22 4457777776653 455555433
Q ss_pred ----CCHHHHHH-HhccCCCcEEeeccccCcc---cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH-
Q 015899 296 ----HDEREMDR-VLGIEGIELIGINNRNLET---FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE- 366 (398)
Q Consensus 296 ----ht~eEl~r-Al~l~Ga~iIGINnRdL~t---f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~- 366 (398)
.+..++-+ +.+. |++.|-+..|+... -..|++...++.+. .++++|+-|||.|++|+.++.+
T Consensus 145 ~~~~~~~~~~a~~le~~-G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~--------~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 145 APEHRNCVEIAQLAEDC-GIQALTIHGRTRACLFNGEAEYDSIRAVKQK--------VSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred cCCcchHHHHHHHHHHh-CCCEEEEecCccccccCCCcChHHHHHHHHh--------cCCcEEEeCCCCCHHHHHHHHhc
Confidence 13334444 3454 89999888776432 23566666666554 3689999999999999999997
Q ss_pred cCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 367 AGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 367 ~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.|||+|.||.+++..+.....+++++.
T Consensus 216 ~gadgVmiGR~~l~nP~if~~~~~~~~ 242 (321)
T PRK10415 216 TGADALMIGRAAQGRPWIFREIQHYLD 242 (321)
T ss_pred cCCCEEEEChHhhcCChHHHHHHHHHh
Confidence 699999999999999998888887764
No 138
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.97 E-value=0.00014 Score=70.18 Aligned_cols=136 Identities=20% Similarity=0.160 Sum_probs=91.5
Q ss_pred CCcEEeccccCCHHHHH---HHHHcCcCEEEEeccC--------------C-ChHHHHHHHHHHHHcCCcEEEEcC----
Q 015899 239 KCPLLCKEFIVDAWQIY---YARTKGADAVLLIAAV--------------L-PDLDIRYMTKICKLLGLTALVEVH---- 296 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~---eAr~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~LGL~~LVEVh---- 296 (398)
..|+...=...++.+.. +-..-++|+|=|.+.. | +++.+.++++..++.+..+.|-++
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~ 146 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCI 146 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 44665332223444333 3345689999887553 4 445689999988887888877665
Q ss_pred --CHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 297 --DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 297 --t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
+..++-+++.-.|++.|.|..+.-.....|++...++.+. + .++++|+-|||.|.+|+.+++++|||+|.|
T Consensus 147 ~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~-----~--~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 147 PLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE-----F--NDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh-----c--CCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 1224434343349999988643221111466666666553 1 248899999999999999999999999999
Q ss_pred cccccCC
Q 015899 375 GESIVKQ 381 (398)
Q Consensus 375 GeaLmk~ 381 (398)
|+++++.
T Consensus 220 gR~~l~~ 226 (231)
T TIGR00736 220 ARAILKG 226 (231)
T ss_pred cHhhccC
Confidence 9999876
No 139
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.96 E-value=0.00078 Score=66.34 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=88.3
Q ss_pred HHHHHHHcCcCEEEEeccCCCh------HHHHHHHHHHHHcCCcEEEEc------CCHHH-----HHHHhccCCCcEEee
Q 015899 253 QIYYARTKGADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEV------HDERE-----MDRVLGIEGIELIGI 315 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~------~~L~~Li~~a~~LGL~~LVEV------ht~eE-----l~rAl~l~Ga~iIGI 315 (398)
.+.+|...|||+|-.-.-+-++ .++.++.+.|++.||.+|+.. .+..+ ...+.++ |||+|=+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaEL-GADiVK~ 177 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEM-GAQIIKT 177 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHH-cCCEEec
Confidence 4889999999999886655443 235556677888999988722 22222 3456787 9999998
Q ss_pred ccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHH-----HHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015899 316 NNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD-----DIAYVQEAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 316 NnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~e-----D~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
+-. . +...++... -.++||..||=++.+ .+....++|+.||.+|.-+...+||.+.++.
T Consensus 178 ~y~-------~-~~f~~vv~a--------~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~a 241 (264)
T PRK08227 178 YYV-------E-EGFERITAG--------CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKA 241 (264)
T ss_pred CCC-------H-HHHHHHHHc--------CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHH
Confidence 742 1 344566554 246788888877422 3455678899999999999999999988877
Q ss_pred hhc
Q 015899 391 LFG 393 (398)
Q Consensus 391 L~~ 393 (398)
|..
T Consensus 242 l~~ 244 (264)
T PRK08227 242 VHA 244 (264)
T ss_pred HHH
Confidence 753
No 140
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.96 E-value=0.00023 Score=72.56 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCc-EEEEeccCCcCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHHHHHHcCcCEEEEeccC--
Q 015899 200 VEIARSYEKGGAA-CLSILTDEKYFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIYYARTKGADAVLLIAAV-- 271 (398)
Q Consensus 200 ~~iA~aY~~~GA~-aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL-----~KDFIid~~QI~eAr~~GADaVLLiaai-- 271 (398)
..+|++..+.|.. ++|-. -.-++|++.... .+-|.. .||.-+....|..|.++|+.++.|.+-.
T Consensus 92 ~a~AraA~~~gi~~~lSt~-----s~~s~Eei~~~~---~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 92 VATARGMAEVGSLFSISTY-----SNTSLEEIAKAS---NGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HHHHHHHHHcCCCEEecCC-----CCCCHHHHHHhc---CCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 6788999888854 33542 234566665432 022332 3565566667888899999998886522
Q ss_pred --------------------------------------------CChHHHHHHHHHHHHcCCcEEEE-cCCHHHHHHHhc
Q 015899 272 --------------------------------------------LPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLG 306 (398)
Q Consensus 272 --------------------------------------------L~~~~L~~Li~~a~~LGL~~LVE-Vht~eEl~rAl~ 306 (398)
++.++++ ...+..++.+++- |.+.+++.++.+
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~lr~~~~~PvivKgv~~~~dA~~a~~ 240 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIE---FIAKISGLPVIVKGIQSPEDADVAIN 240 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHH---HHHHHhCCcEEEecCCCHHHHHHHHH
Confidence 1111222 2223457777776 889999999999
Q ss_pred cCCCcEEeeccccCccc---ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 307 IEGIELIGINNRNLETF---EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 307 l~Ga~iIGINnRdL~tf---~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
+ |++.|-+.|..-..+ ...++...++.+. + ...+++|+-|||.+..|+.++..+||++|.||..++..
T Consensus 241 ~-G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a-----~-~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~ 311 (351)
T cd04737 241 A-GADGIWVSNHGGRQLDGGPASFDSLPEIAEA-----V-NHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred c-CCCEEEEeCCCCccCCCCchHHHHHHHHHHH-----h-CCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 7 999887754432222 1223333333332 1 23589999999999999999999999999999998875
No 141
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.00019 Score=68.46 Aligned_cols=164 Identities=20% Similarity=0.267 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHH
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (398)
.+...+|++..++|..+|=| |... .+-.+-++.+++. ..=-++--.-++++.|+++|..+||+-|. .--++
T Consensus 25 e~a~~~a~Ali~gGi~~IEI-Tl~s--p~a~e~I~~l~~~-~p~~lIGAGTVL~~~q~~~a~~aGa~fiV--sP~~~--- 95 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEI-TLRT--PAALEAIRALAKE-FPEALIGAGTVLNPEQARQAIAAGAQFIV--SPGLN--- 95 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEE-ecCC--CCHHHHHHHHHHh-CcccEEccccccCHHHHHHHHHcCCCEEE--CCCCC---
Confidence 36788999999999999988 3221 1345566666654 32114445668999999999999999754 23344
Q ss_pred HHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 277 IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 277 L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
.++++.|...||..+=-|.|..|+..|+++ |++.+ +-|.-+.---...++.+.+ +..++.+..-|||
T Consensus 96 -~ev~~~a~~~~ip~~PG~~TptEi~~Ale~-G~~~l-------K~FPa~~~Gg~~~~ka~~g---P~~~v~~~pTGGV- 162 (211)
T COG0800 96 -PEVAKAANRYGIPYIPGVATPTEIMAALEL-GASAL-------KFFPAEVVGGPAMLKALAG---PFPQVRFCPTGGV- 162 (211)
T ss_pred -HHHHHHHHhCCCcccCCCCCHHHHHHHHHc-Chhhe-------eecCccccCcHHHHHHHcC---CCCCCeEeecCCC-
Confidence 468899999999999999999999999998 98653 3343332211222222211 2356889999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+++.+.....+|+.+|-+|+.|+++.
T Consensus 163 s~~N~~~yla~gv~avG~Gs~l~~~~ 188 (211)
T COG0800 163 SLDNAADYLAAGVVAVGLGSWLVPKD 188 (211)
T ss_pred CHHHHHHHHhCCceEEecCccccChh
Confidence 78899999999999999999999764
No 142
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.94 E-value=0.0001 Score=74.12 Aligned_cols=167 Identities=19% Similarity=0.233 Sum_probs=97.6
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccC----------CcCCCCHHHHHHHHhcCCCCcEEecc
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCKE 246 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~----------~~F~Gs~edL~~Ir~a~v~lPVL~KD 246 (398)
..+|+.+=-..+ . ..++.+++++.+..+|.++-+--.+ +-|.+-.+.|+.+++. +++||+.|.
T Consensus 113 ~p~~~Nl~~~~~-----~-~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~-~~vPVivK~ 185 (326)
T cd02811 113 GPLIANLGAVQL-----N-GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKA-LSVPVIVKE 185 (326)
T ss_pred ceEEeecCcccc-----C-CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEe
Confidence 457776642222 1 4588888888887788877775321 1244445788889986 899999985
Q ss_pred --ccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc
Q 015899 247 --FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (398)
Q Consensus 247 --FIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~ 324 (398)
+..+...+..+..+|+|+|.+-.. .... ...++..+..... . + .. ..+.++.
T Consensus 186 ~g~g~s~~~a~~l~~~Gvd~I~vsG~--GGt~-~~~ie~~r~~~~~-------~-~-----~~----------~~~~~~g 239 (326)
T cd02811 186 VGFGISRETAKRLADAGVKAIDVAGA--GGTS-WARVENYRAKDSD-------Q-R-----LA----------EYFADWG 239 (326)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEECCC--CCCc-ccccccccccccc-------c-c-----cc----------ccccccc
Confidence 445666666677889998887432 1100 0001111110000 0 0 00 0011111
Q ss_pred cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 325 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 325 vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+. +...|.. ++.. . .++++|+-|||.+..|+.++..+|||+|-+|+++++.-
T Consensus 240 ~~--t~~~l~~-~~~~-~--~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~ 291 (326)
T cd02811 240 IP--TAASLLE-VRSA-L--PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA 291 (326)
T ss_pred cc--HHHHHHH-HHHH-c--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Confidence 11 1122211 1110 1 26889999999999999999999999999999876543
No 143
>PLN02535 glycolate oxidase
Probab=97.94 E-value=4.6e-05 Score=77.99 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=75.0
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl 305 (398)
+.++++.+|+. .++||+.|+. .++.....+..+|+|+|.+.-.- . +. +
T Consensus 211 tW~~i~~lr~~-~~~PvivKgV-~~~~dA~~a~~~GvD~I~vsn~G--G----------r~------------------~ 258 (364)
T PLN02535 211 SWKDIEWLRSI-TNLPILIKGV-LTREDAIKAVEVGVAGIIVSNHG--A----------RQ------------------L 258 (364)
T ss_pred CHHHHHHHHhc-cCCCEEEecC-CCHHHHHHHHhcCCCEEEEeCCC--c----------CC------------------C
Confidence 67999999996 8999999997 88889999999999999663321 1 00 0
Q ss_pred ccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 306 ~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.. + ..| +....++.+. + ..++++|+.|||.+..|+.++..+||++|.||..++..
T Consensus 259 d~-~----------~~t----~~~L~ev~~a-----v-~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~ 313 (364)
T PLN02535 259 DY-S----------PAT----ISVLEEVVQA-----V-GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYG 313 (364)
T ss_pred CC-C----------hHH----HHHHHHHHHH-----H-hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhh
Confidence 10 0 000 1222222222 1 13578999999999999999999999999999999875
No 144
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.94 E-value=5.5e-05 Score=77.39 Aligned_cols=100 Identities=25% Similarity=0.268 Sum_probs=75.3
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl 305 (398)
+.++|+.+|+. .+.||+.|+ |+++.+...+..+|||+|.+-- -..
T Consensus 224 ~w~~i~~ir~~-~~~pviiKg-V~~~eda~~a~~~G~d~I~VSn--hGG------------------------------- 268 (361)
T cd04736 224 NWQDLRWLRDL-WPHKLLVKG-IVTAEDAKRCIELGADGVILSN--HGG------------------------------- 268 (361)
T ss_pred CHHHHHHHHHh-CCCCEEEec-CCCHHHHHHHHHCCcCEEEECC--CCc-------------------------------
Confidence 47899999997 899999998 6899999999999999998721 110
Q ss_pred ccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 306 ~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
|.+..-...++...++.+. .++.+++.|||.+..|+.+...+||++|.||..++.
T Consensus 269 ------------rqld~~~~~~~~L~ei~~~--------~~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 269 ------------RQLDDAIAPIEALAEIVAA--------TYKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred ------------CCCcCCccHHHHHHHHHHH--------hCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 1111111123333333332 247899999999999999999999999999999884
No 145
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.92 E-value=0.00049 Score=66.06 Aligned_cols=172 Identities=18% Similarity=0.203 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec--------c
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA--------A 270 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia--------a 270 (398)
...++++.+.|||+-|=|-. +++-++.+|+. +++||=.-- ++|.+.+.|..+|||.|=++- +
T Consensus 29 V~~i~~AA~~ggAt~vDIAa-------dp~LV~~~~~~-s~lPICVSa--Vep~~f~~aV~AGAdliEIGNfDsFY~qGr 98 (242)
T PF04481_consen 29 VAAIVKAAEIGGATFVDIAA-------DPELVKLAKSL-SNLPICVSA--VEPELFVAAVKAGADLIEIGNFDSFYAQGR 98 (242)
T ss_pred HHHHHHHHHccCCceEEecC-------CHHHHHHHHHh-CCCCeEeec--CCHHHHHHHHHhCCCEEEecchHHHHhcCC
Confidence 45678999999999999964 56688888886 899997766 799999999999999987753 2
Q ss_pred CCChHHHHHHHHHHHHc--CCcE------EEEcCCHHHHHHHhccCCCcEEeec----cccCcccc--------cChhhH
Q 015899 271 VLPDLDIRYMTKICKLL--GLTA------LVEVHDEREMDRVLGIEGIELIGIN----NRNLETFE--------VDNSNT 330 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~L--GL~~------LVEVht~eEl~rAl~l~Ga~iIGIN----nRdL~tf~--------vDl~~t 330 (398)
.++.++.-+|.+..++| .... ++..+...++-.-+...|+|+|-+- .+..+.-. +-+..+
T Consensus 99 ~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaa 178 (242)
T PF04481_consen 99 RFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAA 178 (242)
T ss_pred eecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHH
Confidence 45777888888888875 3322 2222233333333332499999543 32221111 113333
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 389 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 389 (398)
..+.+. -++++++.|||+... +-....+||.||=||+++-+-.|...-+.
T Consensus 179 y~ISr~--------v~iPVlcASGlS~vT-~PmAiaaGAsGVGVGSavn~Ln~~~aMva 228 (242)
T PF04481_consen 179 YAISRA--------VSIPVLCASGLSAVT-APMAIAAGASGVGVGSAVNRLNDEVAMVA 228 (242)
T ss_pred HHHHhc--------cCCceEeccCcchhh-HHHHHHcCCcccchhHHhhhcccHHHHHH
Confidence 344332 368999999996554 77788899999999999999998766543
No 146
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.92 E-value=0.0017 Score=60.49 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=105.7
Q ss_pred HHHHHHHHcCCcEEEEeccC---CcCCCCHHHHHHHHhcCC-----CCcEEeccccCCHHHHH-HHHHcCcCEEEEeccC
Q 015899 201 EIARSYEKGGAACLSILTDE---KYFKGSFENLEAVRSAGV-----KCPLLCKEFIVDAWQIY-YARTKGADAVLLIAAV 271 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~---~~F~Gs~edL~~Ir~a~v-----~lPVL~KDFIid~~QI~-eAr~~GADaVLLiaai 271 (398)
+.++...++||++|-+...+ ++. +++..+.+++. + .++|+..| +...|. .+...|+|.|-|...-
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~s~R~v--~~~~a~~l~~~-~~~~~~~V~v~vn~---~~~~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPKSPRYV--SPEQAREIVAA-LPPFVKRVGVFVNE---DLEEILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCC--CHHHHHHHHHh-CCCCCcEEEEEeCC---CHHHHHHHHHhcCCCEEEECCCC
Confidence 45666678899999997533 222 45555666654 2 24454444 223333 3567899999997642
Q ss_pred CChHHHHHHHHHHHHcCCcEE--EEcCCHHHHH--HHhccCCCcEEeeccccCc-----ccccChhhHHHHhhhhccccc
Q 015899 272 LPDLDIRYMTKICKLLGLTAL--VEVHDEREMD--RVLGIEGIELIGINNRNLE-----TFEVDNSNTKKLLEGERGEII 342 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~L--VEVht~eEl~--rAl~l~Ga~iIGINnRdL~-----tf~vDl~~t~~L~~~i~~~~i 342 (398)
+.+.+.++- ..+|...| +-+++..+++ .+... +++.+.+.+..-. .-..|++...++.
T Consensus 84 -~~~~~~~l~---~~~~~~~i~~i~~~~~~~~~~~~~~~~-~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-------- 150 (203)
T cd00405 84 -SPEYCAQLR---ARLGLPVIKAIRVKDEEDLEKAAAYAG-EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-------- 150 (203)
T ss_pred -CHHHHHHHH---hhcCCcEEEEEecCChhhHHHhhhccc-cCCEEEEcCCCCCCCCCCcceEChHHhhccc--------
Confidence 322233221 23588888 8887776655 44443 8888876543211 1233444322221
Q ss_pred ccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCC---CChHHHHHhhh
Q 015899 343 RQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQ---DDPGKGITGLF 392 (398)
Q Consensus 343 ~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~---~dp~~~i~~L~ 392 (398)
..+++++.||| |++.+..+.+.| +++|-|++++... .|+. .+++|+
T Consensus 151 --~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~-ki~~~~ 200 (203)
T cd00405 151 --SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPE-KIRAFI 200 (203)
T ss_pred --cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHH-HHHHHH
Confidence 24689999999 999999999999 9999999999987 3433 344544
No 147
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.88 E-value=0.00014 Score=73.88 Aligned_cols=165 Identities=19% Similarity=0.242 Sum_probs=98.9
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccC----------CcCCCCHHHHHHHHhcCCCCcEEec
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDE----------KYFKGSFENLEAVRSAGVKCPLLCK 245 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~----------~~F~Gs~edL~~Ir~a~v~lPVL~K 245 (398)
...+|+-+==..+. ..++.+++++.+..+|+++.+...+ .-|.+-++.|+.+++. +++||+.|
T Consensus 120 ~~p~~aNl~~~~~~------~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK 192 (352)
T PRK05437 120 DGLLFANLGAVQLY------GYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA-LPVPVIVK 192 (352)
T ss_pred CceEEeecCccccC------CCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh-hCCCEEEE
Confidence 34677777332221 4578888888888888877775411 1244455789999986 89999998
Q ss_pred c--ccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCccc
Q 015899 246 E--FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETF 323 (398)
Q Consensus 246 D--FIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf 323 (398)
. +..+...+..+..+|+|+|.+... ....-. -+|.|...+- +. . - ...++
T Consensus 193 ~~g~g~s~~~a~~l~~~Gvd~I~Vsg~--GGt~~~-------------~ie~~R~~~~----~~-~---~-----~~~~~ 244 (352)
T PRK05437 193 EVGFGISKETAKRLADAGVKAIDVAGA--GGTSWA-------------AIENYRARDD----RL-A---S-----YFADW 244 (352)
T ss_pred eCCCCCcHHHHHHHHHcCCCEEEECCC--CCCCcc-------------chhhhhhhcc----cc-c---c-----ccccc
Confidence 4 446666666677889999888442 110000 0110000000 00 0 0 00011
Q ss_pred ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 324 ~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.+ .+...| ..+... . .++++|+.|||.++.|+.++..+|||+|.||+++++.
T Consensus 245 g~--pt~~~l-~~i~~~-~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 245 GI--PTAQSL-LEARSL-L--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred cC--CHHHHH-HHHHHh-c--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 11 111222 111110 1 2579999999999999999999999999999999876
No 148
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.88 E-value=0.00012 Score=72.75 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=71.0
Q ss_pred HHHHHHHHHH-c--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 277 IRYMTKICKL-L--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 277 L~~Li~~a~~-L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+.+-++.++. . +.-+-|||||++|+..|+++ |+++|+..|-+. +...+.+..++. . ...+++.+.|
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~-GaD~I~LDn~~~-------e~l~~av~~~~~--~-~~~i~leAsG 250 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEY-GADIIMLDNMPV-------DLMQQAVQLIRQ--Q-NPRVKIEASG 250 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc-CCCEEEECCCCH-------HHHHHHHHHHHh--c-CCCeEEEEEC
Confidence 4555555554 3 47789999999999999997 999999985443 334444432211 0 1367899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
|| |++.+..+...|+|.+.+|..+++.+
T Consensus 251 GI-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 251 NI-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred CC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 99 89999999999999999999887654
No 149
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=97.83 E-value=0.0014 Score=64.15 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=107.3
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEE------eccccCCHHH-------HHHHHHcCcCE
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL------CKEFIVDAWQ-------IYYARTKGADA 264 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL------~KDFIid~~Q-------I~eAr~~GADa 264 (398)
+-|...+++||+.|=++.. -.-+| |+.-++.+++. +++||. .+||..++.+ |..++.+|||+
T Consensus 12 ~~a~~A~~~GAdRiELc~~-L~~GGlTPS~g~i~~~~~~-~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadG 89 (248)
T PRK11572 12 ECALTAQQAGADRIELCAA-PKEGGLTPSLGVLKSVRER-VTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPG 89 (248)
T ss_pred HHHHHHHHcCCCEEEEccC-cCCCCcCCCHHHHHHHHHh-cCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 4577888999999987653 23445 88999999987 899985 2699988874 66888999999
Q ss_pred EEEecc----CCChHHHHHHHHHHHHcCCcE---EEEcCCHHH-HHHHhccCCCcEEeeccccCcccccChhhHHHHhhh
Q 015899 265 VLLIAA----VLPDLDIRYMTKICKLLGLTA---LVEVHDERE-MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 265 VLLiaa----iL~~~~L~~Li~~a~~LGL~~---LVEVht~eE-l~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~ 336 (398)
|.+++- -++.+.++.|++.|+.+.++. +=++.|..+ ++...++ |++=|=+..-. .+..-.++...+|.+.
T Consensus 90 vV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l-G~~rILTSGg~-~~a~~g~~~L~~lv~~ 167 (248)
T PRK11572 90 LVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL-GVARILTSGQQ-QDAEQGLSLIMELIAA 167 (248)
T ss_pred EEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc-CCCEEECCCCC-CCHHHHHHHHHHHHHh
Confidence 999762 234456999999886444432 112334444 4555665 66433222110 0111124555555553
Q ss_pred hcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 337 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 337 i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
. .+..+++.||| +++.+..+...|+..|=.
T Consensus 168 a-------~~~~Im~GgGV-~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 168 S-------DGPIIMAGAGV-RLSNLHKFLDAGVREVHS 197 (248)
T ss_pred c-------CCCEEEeCCCC-CHHHHHHHHHcCCCEEee
Confidence 1 24458999999 788898888999987753
No 150
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.79 E-value=0.00019 Score=67.84 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEec-cCCc---CCCCHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHHcCcCEEEEecc
Q 015899 196 DFDPVEIARSYEKGGAACLSILT-DEKY---FKGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLT-d~~~---F~Gs~edL~~Ir~a~v~lPVL~KDFIid~-~QI~eAr~~GADaVLLiaa 270 (398)
..+..+..+.++++|++.+|+=- |-.| +.-+++.++.+|+. +++|+=.-=-+-+| .-+.+...+|||.|.+=..
T Consensus 11 ~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 11 FLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVENPERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhc-CCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc
Confidence 45778889999999999999843 3333 33478999999997 88886211112234 3466667889999999887
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEEeecccc--C--cccccC-hhhHHHHhhhhccccc
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINNRN--L--ETFEVD-NSNTKKLLEGERGEII 342 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iIGINnRd--L--~tf~vD-l~~t~~L~~~i~~~~i 342 (398)
... ++.++++++++.|+.+-+=+. ..+.++..+. ..+.|-+=..+ . ..|..+ ++...++.+..+..
T Consensus 90 ~~~--~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~-- 163 (201)
T PF00834_consen 90 ATE--DPKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPEN-- 163 (201)
T ss_dssp GTT--THHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHH--
T ss_pred chh--CHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhc--
Confidence 553 578899999999999866554 3344444444 35655443221 1 222222 23333333321110
Q ss_pred ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 343 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 343 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
..++.+-.-||| +.+.+..+.++|+|.+++|++|.+++
T Consensus 164 -~~~~~I~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 164 -GLDFEIEVDGGI-NEENIKQLVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp -TCGSEEEEESSE-STTTHHHHHHHT--EEEESHHHHTS-
T ss_pred -CCceEEEEECCC-CHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 135788889999 77789999999999999999998763
No 151
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.79 E-value=0.0005 Score=69.58 Aligned_cols=207 Identities=15% Similarity=0.086 Sum_probs=118.7
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCC----------cC--C---C--------C--H-HHHHHH
Q 015899 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEK----------YF--K---G--------S--F-ENLEAV 233 (398)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~----------~F--~---G--------s--~-edL~~I 233 (398)
++-++-.+|- |.=.....-.+..+.+.+.|+.+|-+=|-.. .| . | + . ..+..+
T Consensus 53 ~~Gl~l~nPi-~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l 131 (344)
T PRK05286 53 VMGLTFPNPV-GLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERL 131 (344)
T ss_pred ECCEECCCCC-EECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHH
Confidence 5567778885 3222222223566668888888776543211 11 0 0 1 1 245555
Q ss_pred HhcCCCCcEEe---cc------ccCCHH-H-HHHHHHcCcCEEEEeccCC---------ChHHHHHHHHHHHH-cC----
Q 015899 234 RSAGVKCPLLC---KE------FIVDAW-Q-IYYARTKGADAVLLIAAVL---------PDLDIRYMTKICKL-LG---- 288 (398)
Q Consensus 234 r~a~v~lPVL~---KD------FIid~~-Q-I~eAr~~GADaVLLiaaiL---------~~~~L~~Li~~a~~-LG---- 288 (398)
++...++||+. +. .....| + +.++ .-+||++.|....- .++.+.++++..++ .+
T Consensus 132 ~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~ 210 (344)
T PRK05286 132 KKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHG 210 (344)
T ss_pred HHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhcccc
Confidence 54324788863 21 112233 2 2222 23599999986532 23457778777775 45
Q ss_pred -CcEEEEcC---C---HHHHHHHhccCCCcEEeeccccC-----ccccc-----------ChhhHHHHhhhhcccccccC
Q 015899 289 -LTALVEVH---D---EREMDRVLGIEGIELIGINNRNL-----ETFEV-----------DNSNTKKLLEGERGEIIRQK 345 (398)
Q Consensus 289 -L~~LVEVh---t---~eEl~rAl~l~Ga~iIGINnRdL-----~tf~v-----------Dl~~t~~L~~~i~~~~i~~~ 345 (398)
+.++|-+. + ..++-+++...|++.|-+.|+.. .++.. ......+.+..++.. + +.
T Consensus 211 ~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-~-~~ 288 (344)
T PRK05286 211 YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-L-GG 288 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-h-CC
Confidence 88888886 2 33343333324899887776642 21110 001122233322211 1 23
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHHHh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGITG 390 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i~~ 390 (398)
++++|+.|||.|++|+.++..+|||+|-||++++. .++....+.+
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHH
Confidence 68999999999999999999999999999999975 4766555544
No 152
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.77 E-value=0.0013 Score=61.56 Aligned_cols=153 Identities=13% Similarity=0.111 Sum_probs=96.3
Q ss_pred CCHHHHHHHHhcCCCCcEEec--cccCC-HHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEE--EcCC--
Q 015899 225 GSFENLEAVRSAGVKCPLLCK--EFIVD-AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV--EVHD-- 297 (398)
Q Consensus 225 Gs~edL~~Ir~a~v~lPVL~K--DFIid-~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LV--EVht-- 297 (398)
-+++.++.+|+. ..+|+=.| |..-+ .+++..+..+|||+|.+-+. .....+..+++.+++.|+.+++ +..+
T Consensus 42 ~G~~~v~~ir~~-~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e-~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~ 119 (215)
T PRK13813 42 SGLGIIEELKRY-APVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGF-TGRDSLKAVVEAAAESGGKVFVVVEMSHPG 119 (215)
T ss_pred hCHHHHHHHHhc-CCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCc-CCHHHHHHHHHHHHhcCCeEEEEEeCCCCC
Confidence 467889999986 54543233 22222 34556778899999888665 3345699999999999999866 2222
Q ss_pred -----HHHHHHHhcc---CCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCH-HHHHHHHHcC
Q 015899 298 -----EREMDRVLGI---EGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP-DDIAYVQEAG 368 (398)
Q Consensus 298 -----~eEl~rAl~l---~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~-eD~~~l~~~G 368 (398)
.+.++.++.+ .|++..-+.. ..++...++.+. .+.++.+ .-+||... .++..+.++|
T Consensus 120 ~~~~~~~~~~~v~~m~~e~G~~g~~~~~-------~~~~~i~~l~~~------~~~~~~i-vdgGI~~~g~~~~~~~~aG 185 (215)
T PRK13813 120 ALEFIQPHADKLAKLAQEAGAFGVVAPA-------TRPERVRYIRSR------LGDELKI-ISPGIGAQGGKAADAIKAG 185 (215)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEECC-------CcchhHHHHHHh------cCCCcEE-EeCCcCCCCCCHHHHHHcC
Confidence 1234444332 1443222111 112322344332 1223333 56888653 2588889999
Q ss_pred CCEEEEcccccCCCChHHHHHhhhc
Q 015899 369 VKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 369 adaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+|.+++|++|++++||.+.++.|..
T Consensus 186 ad~iV~Gr~I~~~~d~~~~~~~l~~ 210 (215)
T PRK13813 186 ADYVIVGRSIYNAADPREAAKAINE 210 (215)
T ss_pred CCEEEECcccCCCCCHHHHHHHHHH
Confidence 9999999999999999999988853
No 153
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.75 E-value=0.0026 Score=61.27 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=88.4
Q ss_pred CCcEEeccccCCHHHHHHHH---HcCcCEEEEeccC--------------C-ChHHHHHHHHHHHHcCCcEEEEcC----
Q 015899 239 KCPLLCKEFIVDAWQIYYAR---TKGADAVLLIAAV--------------L-PDLDIRYMTKICKLLGLTALVEVH---- 296 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr---~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~LGL~~LVEVh---- 296 (398)
+.|+...=+.-++.++.++. ..++|.|=|+... | +++.+.++++..++.++.+.|-+.
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~ 151 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD 151 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC
Confidence 56776665666676655442 2356888776663 2 245688889888888888888774
Q ss_pred -CHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 297 -DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 297 -t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
+..++-+.++-.|++.|-+.++.- ....|++...++. .++++|+-|||.|++|+.++...|||+|.||
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~-g~~ad~~~I~~i~----------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP-GNHADLKKIRDIS----------TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC-CCCCcHHHHHHhc----------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 444554444334999876654322 1345654433331 2578999999999999999999999999999
Q ss_pred cc
Q 015899 376 ES 377 (398)
Q Consensus 376 ea 377 (398)
.+
T Consensus 221 R~ 222 (233)
T cd02911 221 RA 222 (233)
T ss_pred CC
Confidence 99
No 154
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.74 E-value=9.4e-05 Score=71.41 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCH-----HH-HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSF-----EN-LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~-----ed-L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
.+.+..+...+.|+++|-| +||. ++ +..+++. +++||+-- .=++-|| .-|||++|.. ++
T Consensus 20 ~~~~~~~~~~~~gtDai~V-------GGS~~~~~~d~vv~~ik~~-~~lPvilf--Pg~~~~v----s~~aDail~~-sv 84 (230)
T PF01884_consen 20 NPEEALEAACESGTDAIIV-------GGSDTGVTLDNVVALIKRV-TDLPVILF--PGSPSQV----SPGADAILFP-SV 84 (230)
T ss_dssp -HHHHHHHHHCTT-SEEEE-------E-STHCHHHHHHHHHHHHH-SSS-EEEE--TSTCCG------TTSSEEEEE-EE
T ss_pred CcHHHHHHHHhcCCCEEEE-------CCCCCccchHHHHHHHHhc-CCCCEEEe--CCChhhc----CcCCCEEEEE-EE
Confidence 4556666668899999999 4655 22 3445666 89998632 2233344 2589999885 34
Q ss_pred CC--------hHHHHHHHHHHHHcCCcEEEE--------------------cCCHHHHHHHhcc----CCCcEEeecc-c
Q 015899 272 LP--------DLDIRYMTKICKLLGLTALVE--------------------VHDEREMDRVLGI----EGIELIGINN-R 318 (398)
Q Consensus 272 L~--------~~~L~~Li~~a~~LGL~~LVE--------------------Vht~eEl~rAl~l----~Ga~iIGINn-R 318 (398)
|+ ..+.+.. ...+.++++++-| =++.+|+..+..+ -|.++|=+-- .
T Consensus 85 lNs~n~~~iig~~~~aa-~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYLEaGS 163 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAA-PLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYLEAGS 163 (230)
T ss_dssp TTBSSTTTTTHHHHHHH-HHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEEE--T
T ss_pred ecCCCcchHhhHHHHHH-HHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 42 3333333 3344567887432 1244444443332 1333432211 0
Q ss_pred cCcccccCh-hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 319 NLETFEVDN-SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 319 dL~tf~vDl-~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
. + .-+. +...+..+. + .+++++..|||+|+++++.+.++|||.|+||+++.+..+..++++..
T Consensus 164 G--a-~~~v~~~v~~~~~~-----~--~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i 227 (230)
T PF01884_consen 164 G--A-YGPVPEEVIAAVKK-----L--SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETI 227 (230)
T ss_dssp T--S-SS-HHHHHHHHHHH-----S--SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHH
T ss_pred C--C-CCCccHHHHHHHHh-----c--CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHH
Confidence 0 1 1133 333444443 1 47899999999999999999999999999999999988866666543
No 155
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.74 E-value=0.00026 Score=69.56 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=67.8
Q ss_pred HHHHHHHHc---CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCC
Q 015899 279 YMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355 (398)
Q Consensus 279 ~Li~~a~~L---GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI 355 (398)
..++.+++. ++-+-|||||.+|+..|+.. |+++|++.|... +...++++.++. . .++++++.|||
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~-gaD~I~ld~~~~-------e~l~~~v~~i~~--~--~~i~i~asGGI 236 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEA-GADIIMLDNMSP-------EELKEAVKLLKG--L--PRVLLEASGGI 236 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc-CCCEEEECCCCH-------HHHHHHHHHhcc--C--CCeEEEEECCC
Confidence 445566653 47789999999999999997 999999987433 444555544221 1 25789999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 356 FTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 356 ~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
|++.+..+.++|+|++.+| +++.+.
T Consensus 237 -t~~ni~~~a~~Gad~Isvg-al~~s~ 261 (269)
T cd01568 237 -TLENIRAYAETGVDVISTG-ALTHSA 261 (269)
T ss_pred -CHHHHHHHHHcCCCEEEEc-HHHcCC
Confidence 8999999999999999997 444443
No 156
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.73 E-value=0.00071 Score=69.49 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHcCC-cEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGA-ACLSILTDEKYFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA-~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL-----~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
--..+|++..+.|. -++|- +-.-++|++.... .+-|.- .||--+...-|..|..+|+.+++|-+-.
T Consensus 98 gE~~~ArAA~~~g~~~~lSt-----~ss~slEev~~~~---~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~ 169 (367)
T TIGR02708 98 GEVATARGVSEFGSIYTTSS-----YSTADLPEISEAL---NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADA 169 (367)
T ss_pred HHHHHHHHHHHcCCCeeecc-----cccCCHHHHHhhc---CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 35678898888885 34443 3345666665441 122332 3554445566888888999998885421
Q ss_pred ---------------------------------------------CChHHHHHHHHHHHHcCCcEEE-EcCCHHHHHHHh
Q 015899 272 ---------------------------------------------LPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVL 305 (398)
Q Consensus 272 ---------------------------------------------L~~~~L~~Li~~a~~LGL~~LV-EVht~eEl~rAl 305 (398)
++.++++.+ .+..++.++| +|-+.+++.++.
T Consensus 170 p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l---~~~~~~PvivKGv~~~eda~~a~ 246 (367)
T TIGR02708 170 TVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEI---AGYSGLPVYVKGPQCPEDADRAL 246 (367)
T ss_pred CCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHH---HHhcCCCEEEeCCCCHHHHHHHH
Confidence 122233333 2334555533 677899999999
Q ss_pred ccCCCcEEeecccc---CcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 306 GIEGIELIGINNRN---LETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 306 ~l~Ga~iIGINnRd---L~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
++ |++.|-|.|.. +..-..+++...++... + ...+.+++-|||.+..|+.+++.+||++|.||..++..
T Consensus 247 ~~-Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a-----v-~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~ 318 (367)
T TIGR02708 247 KA-GASGIWVTNHGGRQLDGGPAAFDSLQEVAEA-----V-DKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYG 318 (367)
T ss_pred Hc-CcCEEEECCcCccCCCCCCcHHHHHHHHHHH-----h-CCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 97 99988776544 43333344544454443 1 23588999999999999999999999999999987654
No 157
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.73 E-value=0.0028 Score=62.22 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCH---------HHHH----HHHhcCCCCcE----EeccccCCHHHHHHHHHcCcC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSF---------ENLE----AVRSAGVKCPL----LCKEFIVDAWQIYYARTKGAD 263 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~---------edL~----~Ir~a~v~lPV----L~KDFIid~~QI~eAr~~GAD 263 (398)
+=|++|+++|+++|-| ++||.--+ ..+. ++|+. +++|+ |+.| ...-+.-|.++|||
T Consensus 32 ~ea~~l~~~GvD~viv---eN~~d~P~~~~~~p~tva~m~~i~~~v~~~-~~~p~GvnvL~nd---~~aal~iA~a~ga~ 104 (257)
T TIGR00259 32 KDAMALEEGGVDAVMF---ENFFDAPFLKEVDPETVAAMAVIAGQLKSD-VSIPLGINVLRND---AVAALAIAMAVGAK 104 (257)
T ss_pred HHHHHHHhCCCCEEEE---ecCCCCCCcCCCCHHHHHHHHHHHHHHHHh-cCCCeeeeeecCC---CHHHHHHHHHhCCC
Confidence 3378899999999998 55553322 1222 23554 77883 5555 33467778899999
Q ss_pred EEEEec---cCCCh-----HHHHHHHHHHHHcCCc--EEEEcC----------CHHH-HHHHhccCCCcEEeeccccCcc
Q 015899 264 AVLLIA---AVLPD-----LDIRYMTKICKLLGLT--ALVEVH----------DERE-MDRVLGIEGIELIGINNRNLET 322 (398)
Q Consensus 264 aVLLia---aiL~~-----~~L~~Li~~a~~LGL~--~LVEVh----------t~eE-l~rAl~l~Ga~iIGINnRdL~t 322 (398)
-|=... +..++ ....+++++-+.+|-+ +|.+|| +.+| +..+..-..+|-|-++... +.
T Consensus 105 FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~-TG 183 (257)
T TIGR00259 105 FIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKT-TG 183 (257)
T ss_pred EEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCC-CC
Confidence 876521 22332 3577888877776633 344443 4445 3333443247877776432 23
Q ss_pred cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC-----hHHHHHhhhc
Q 015899 323 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD-----PGKGITGLFG 393 (398)
Q Consensus 323 f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d-----p~~~i~~L~~ 393 (398)
-+.|.+...++.+. . .+.+++..||+ |++.+..+.+. +||+.||+++-++.+ -...+++|+.
T Consensus 184 ~~~d~~~l~~vr~~-----~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D~~rV~~Fm~ 250 (257)
T TIGR00259 184 TEVDLELLKLAKET-----V--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIKKDGVFNNFVDQARVSQFVE 250 (257)
T ss_pred CCCCHHHHHHHHhc-----c--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcccCCccCCCcCHHHHHHHHH
Confidence 34566665555432 1 35689999999 99999999987 999999999986442 2345666653
No 158
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.73 E-value=0.00027 Score=69.47 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=67.3
Q ss_pred HHHHHHHHHH-c--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 277 IRYMTKICKL-L--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 277 L~~Li~~a~~-L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+..-++.+++ + +.-+-+||||.+|+..|.+. |+|+|+..|-.. +...+..+.+ ...+++++.|
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~-gaDyI~ld~~~~-------e~lk~~v~~~------~~~ipi~AsG 229 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA-GADIIMLDNMKP-------EEIKEAVQLL------KGRVLLEASG 229 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc-CCCEEEECCCCH-------HHHHHHHHHh------cCCCcEEEEC
Confidence 3344555554 3 46788999999999999997 999999987333 4455555432 1237899999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
|| |++.+..+.+.|+|++-| ++++.+
T Consensus 230 GI-~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 230 GI-TLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred CC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 99 899999999999999999 556653
No 159
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.72 E-value=9.9e-05 Score=70.36 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcC----CCCcEE-ecccc----------CCHHHHHHHHHcCc
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAG----VKCPLL-CKEFI----------VDAWQIYYARTKGA 262 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~----v~lPVL-~KDFI----------id~~QI~eAr~~GA 262 (398)
++.++.+.+.+.|+++|.+ ++.++..++... +.++++ .=++. .+-+++.+|+..||
T Consensus 20 ~~~~~~~~a~~~~~~av~v---------~p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GA 90 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCV---------TPGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGA 90 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEE---------EGGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHhCCCEEEE---------CHHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCC
Confidence 6788888888999999887 233455454321 134443 22221 11578899999999
Q ss_pred CEEEEeccC---CCh------HHHHHHHHHHHHcCCcEEEEcC-CHHH-------------HHHHhccCCCcEEeecccc
Q 015899 263 DAVLLIAAV---LPD------LDIRYMTKICKLLGLTALVEVH-DERE-------------MDRVLGIEGIELIGINNRN 319 (398)
Q Consensus 263 DaVLLiaai---L~~------~~L~~Li~~a~~LGL~~LVEVh-t~eE-------------l~rAl~l~Ga~iIGINnRd 319 (398)
|+|-+..-. .+. +++..+.+.|+..||.+++|.- +.++ .+.+.++ |+|+|=++.-.
T Consensus 91 d~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~-GaD~vKt~tg~ 169 (236)
T PF01791_consen 91 DEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL-GADFVKTSTGK 169 (236)
T ss_dssp SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT-T-SEEEEE-SS
T ss_pred ceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh-CCCEEEecCCc
Confidence 999887665 331 4577888888899999999954 2233 2234565 99999776331
Q ss_pred Cccc-ccChhhHHHHhhhhcccccccCCceEEEecCC------CCHHHHHHHHHcCC--CEEEEcccccC
Q 015899 320 LETF-EVDNSNTKKLLEGERGEIIRQKNIIVVGESGL------FTPDDIAYVQEAGV--KAVLVGESIVK 380 (398)
Q Consensus 320 L~tf-~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI------~t~eD~~~l~~~Ga--daVLVGeaLmk 380 (398)
-... .-|.....++.+..+ .|..+-+++.||+ .+.+++..+.++|+ -|+..|-.|.+
T Consensus 170 ~~~~t~~~~~~~~~~~~~~~----~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 170 PVGATPEDVELMRKAVEAAP----VPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp SSCSHHHHHHHHHHHHHTHS----STTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred cccccHHHHHHHHHHHHhcC----CCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 1111 123444445544311 1233459999999 99999999999999 99999977654
No 160
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00053 Score=67.03 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCC---CcEEeccc----------cCCHHHHHHHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHc
Q 015899 227 FENLEAVRSAGVK---CPLLCKEF----------IVDAWQIYYARTKGADAVLLIAAVL------PDLDIRYMTKICKLL 287 (398)
Q Consensus 227 ~edL~~Ir~a~v~---lPVL~KDF----------Iid~~QI~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~L 287 (398)
+-+|..+.+. +. +++-..|. =+.+.+ .+.+|++.|+++.+=. +++.+..-++.|.+.
T Consensus 45 ~~~L~~~~~~-~~~g~i~~gAQn~~~~~~GA~TGeiS~~m---L~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~ 120 (251)
T COG0149 45 FTDLRRVAEL-VEIGNIKVGAQNVDPEDSGAFTGEISAEM---LKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEA 120 (251)
T ss_pred HHHHHHHHHH-hccCCceEEeccCCcccCCCccCcCCHHH---HHHcCCCEEEECccccccccccchHHHHHHHHHHHHC
Confidence 3466666553 33 35555441 144444 4567999999999833 345577778889999
Q ss_pred CCcEEEEcCCHHH--------------HHHHhccCCC-----------cEEeeccccCcccccChhhHHHHhhhhccccc
Q 015899 288 GLTALVEVHDERE--------------MDRVLGIEGI-----------ELIGINNRNLETFEVDNSNTKKLLEGERGEII 342 (398)
Q Consensus 288 GL~~LVEVht~eE--------------l~rAl~l~Ga-----------~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i 342 (398)
||.+++||..-.| +..++..-+. ..||+ .+..+.- |.+.....++.......
T Consensus 121 Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~vIAYEPvWAIGT-G~~at~~--~a~~v~~~Ir~~~~~~~ 197 (251)
T COG0149 121 GLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIVIAYEPVWAIGT-GKSASPA--DAEEVHAFIRAVLAELF 197 (251)
T ss_pred CCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCcccCeEEEECCHHHhcC-CCCCCHH--HHHHHHHHHHHHHHHhc
Confidence 9999999975551 3333332132 23452 2222221 23333222222110000
Q ss_pred c-cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 343 R-QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 343 ~-~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
. ...+.+...|+|+.-++.+.+.+.++||+|||.+-++.+|+...++.+..
T Consensus 198 ~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~ 249 (251)
T COG0149 198 GAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK 249 (251)
T ss_pred CCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence 0 04789999999999999999999999999999999999999999887753
No 161
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.72 E-value=0.0016 Score=66.43 Aligned_cols=181 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH-HHhcCCCCcEEec----ccc-C-CH-H-----HHHHHHHcC
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA-VRSAGVKCPLLCK----EFI-V-DA-W-----QIYYARTKG 261 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~-Ir~a~v~lPVL~K----DFI-i-d~-~-----QI~eAr~~G 261 (398)
...||..+-+...++|++|+-+ ..--++. .+....++|++-| .-+ - ++ . .|.+|..+|
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~---------~~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLG 159 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAS---------TLGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLG 159 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEe---------CHHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCC
Confidence 5679999999999999999987 2223333 1222236787633 111 1 11 2 388999999
Q ss_pred cCEEEEeccCCCh------HHHHHHHHHHHHcCCcEEEEcC-------CHHH-----------HHHHhccCCCcEEeecc
Q 015899 262 ADAVLLIAAVLPD------LDIRYMTKICKLLGLTALVEVH-------DERE-----------MDRVLGIEGIELIGINN 317 (398)
Q Consensus 262 ADaVLLiaaiL~~------~~L~~Li~~a~~LGL~~LVEVh-------t~eE-----------l~rAl~l~Ga~iIGINn 317 (398)
||+|-.-.-+-++ +++.++.+.|++.||-+++.+. +..+ ...+.++ ||++|=++-
T Consensus 160 AdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL-GADIVKv~y 238 (348)
T PRK09250 160 AVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI-GADIIKQKL 238 (348)
T ss_pred CCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH-cCCEEEecC
Confidence 9999886555443 2355666778899999988543 3222 3455677 999999873
Q ss_pred c-cCccc--------------ccChhhHHHHhhhhcccccccCCceEEEecCCCC-H----HHHHHH---HHcCCCEEEE
Q 015899 318 R-NLETF--------------EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-P----DDIAYV---QEAGVKAVLV 374 (398)
Q Consensus 318 R-dL~tf--------------~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t-~----eD~~~l---~~~GadaVLV 374 (398)
- +...| ..+.+...++.+.+-...+ ...++||..||=++ . +.++.+ +++|+.|+.+
T Consensus 239 p~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~-ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~i 317 (348)
T PRK09250 239 PTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCY-MGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLII 317 (348)
T ss_pred CCChhhHHHhhcccccccccccccccchHHHHHHHHHhhc-cCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhh
Confidence 2 11111 1122222222222100000 01467788888774 2 235566 7789999999
Q ss_pred cccccCCCChHH
Q 015899 375 GESIVKQDDPGK 386 (398)
Q Consensus 375 GeaLmk~~dp~~ 386 (398)
|.-+...+++..
T Consensus 318 GRNIfQ~~~~ea 329 (348)
T PRK09250 318 GRKAFQRPMAEG 329 (348)
T ss_pred chhhhcCCcHHH
Confidence 999999998753
No 162
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.71 E-value=0.0012 Score=66.62 Aligned_cols=147 Identities=14% Similarity=0.094 Sum_probs=99.0
Q ss_pred CCCcEEeccccCCHHHHHHH----HHcCcCEEEEeccC--------------CC-hHHHHHHHHHHHH-cCCcEEEEc--
Q 015899 238 VKCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------LP-DLDIRYMTKICKL-LGLTALVEV-- 295 (398)
Q Consensus 238 v~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L~-~~~L~~Li~~a~~-LGL~~LVEV-- 295 (398)
.+.|+...=|.-+|.++.+| ..+|+|+|-|.+.. +. .+.+.++++..++ .++.+.|-+
T Consensus 63 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~ 142 (333)
T PRK11815 63 EEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI 142 (333)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe
Confidence 35677777677788765544 35699999887542 22 2346677776664 455554421
Q ss_pred --C---CH---HHH-HHHhccCCCcEEeeccccC--cccc---------cChhhHHHHhhhhcccccccCCceEEEecCC
Q 015899 296 --H---DE---REM-DRVLGIEGIELIGINNRNL--ETFE---------VDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355 (398)
Q Consensus 296 --h---t~---eEl-~rAl~l~Ga~iIGINnRdL--~tf~---------vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI 355 (398)
. +. .++ ..+.+. |++.|-+..|+- ..+. .|++...++.+.. .++++|+-|||
T Consensus 143 g~~~~~t~~~~~~~~~~l~~a-G~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-------~~iPVI~nGgI 214 (333)
T PRK11815 143 GIDDQDSYEFLCDFVDTVAEA-GCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-------PHLTIEINGGI 214 (333)
T ss_pred eeCCCcCHHHHHHHHHHHHHh-CCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-------CCCeEEEECCc
Confidence 1 12 233 333344 899998887652 2222 4566666665431 26899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 356 ~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.|++|+.++.+ |||+|.||.+++..+.....+++.+.
T Consensus 215 ~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 215 KTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELF 251 (333)
T ss_pred CCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhc
Confidence 99999999997 79999999999999998888877654
No 163
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.71 E-value=0.00022 Score=70.24 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=60.8
Q ss_pred CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc
Q 015899 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 367 (398)
Q Consensus 288 GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 367 (398)
+.-+-|||||.+|+..|+++ |+++|++.|-..+ ...++.+.++. . ..++++++.||| +++.+..+.+.
T Consensus 183 ~~~IgVev~t~eea~~A~~~-gaD~I~ld~~~p~-------~l~~~~~~~~~--~-~~~i~i~AsGGI-~~~ni~~~~~~ 250 (272)
T cd01573 183 EKKIVVEVDSLEEALAAAEA-GADILQLDKFSPE-------ELAELVPKLRS--L-APPVLLAAAGGI-NIENAAAYAAA 250 (272)
T ss_pred CCeEEEEcCCHHHHHHHHHc-CCCEEEECCCCHH-------HHHHHHHHHhc--c-CCCceEEEECCC-CHHHHHHHHHc
Confidence 45678999999999999997 9999999875432 23344443211 1 125899999999 99999999999
Q ss_pred CCCEEEEcccccC
Q 015899 368 GVKAVLVGESIVK 380 (398)
Q Consensus 368 GadaVLVGeaLmk 380 (398)
|+|+| +.++|+.
T Consensus 251 Gvd~I-~vsai~~ 262 (272)
T cd01573 251 GADIL-VTSAPYY 262 (272)
T ss_pred CCcEE-EEChhhc
Confidence 99999 5555664
No 164
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.71 E-value=0.00033 Score=69.34 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=66.3
Q ss_pred HHHHHHHHHH-c--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 277 IRYMTKICKL-L--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 277 L~~Li~~a~~-L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+.+-++.++. + ++-+=+||||.+|+..|.+. |+|+|++.| ..++...++.+.+ +..+++++.|
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~-gaDyI~lD~-------~~~e~l~~~~~~~------~~~i~i~AiG 239 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAA-GADIIMFDN-------RTPDEIREFVKLV------PSAIVTEASG 239 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc-CCCEEEECC-------CCHHHHHHHHHhc------CCCceEEEEC
Confidence 3444455554 3 35577999999999999996 999999953 4455566665542 2347889999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
|| |++.+..+.+.|+|++-||.-.
T Consensus 240 GI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 240 GI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred CC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99 9999999999999999999643
No 165
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.70 E-value=0.00098 Score=67.31 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH----HHHhcCCCCcE----E-eccccCCHHHHHHHHHcCcCEEEEe
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPL----L-CKEFIVDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~----~Ir~a~v~lPV----L-~KDFIid~~QI~eAr~~GADaVLLi 268 (398)
+..++|.+..++|.= -+|.-. ..+++.++ .+|+..++.|. + ..+--..+.|+....+.+...|.+-
T Consensus 15 ~~~~LaaAVS~AGgL--G~la~~---~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~ 89 (320)
T cd04743 15 DVAEFAVAVAEGGGL--PFIALA---LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIA 89 (320)
T ss_pred CcHHHHHHHHhCCcc--ccCCCC---CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEc
Confidence 434677777776643 343311 12455544 44542146662 1 1111123468888889999998874
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccc-------cCcccccChhhHHHHhhhhcccc
Q 015899 269 AAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNR-------NLETFEVDNSNTKKLLEGERGEI 341 (398)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnR-------dL~tf~vDl~~t~~L~~~i~~~~ 341 (398)
. - .+.+ ++..+..|+.++..|.|..++.++.++ |+|.|-.... ++.||..-.+....|......
T Consensus 90 ~-G-~P~~----~~~lk~~Gi~v~~~v~s~~~A~~a~~~-GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~-- 160 (320)
T cd04743 90 G-G-RPDQ----ARALEAIGISTYLHVPSPGLLKQFLEN-GARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGP-- 160 (320)
T ss_pred C-C-ChHH----HHHHHHCCCEEEEEeCCHHHHHHHHHc-CCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcc--
Confidence 3 2 2222 367788899999999999999999997 9998855422 445553222222222211000
Q ss_pred cccCCceEEEecCCCCHHHHHHHHHcCC--------CEEEEcccccCCCC
Q 015899 342 IRQKNIIVVGESGLFTPDDIAYVQEAGV--------KAVLVGESIVKQDD 383 (398)
Q Consensus 342 i~~~~v~vVAESGI~t~eD~~~l~~~Ga--------daVLVGeaLmk~~d 383 (398)
....+++||+.|||.+...+..+..+|+ +||.+|+.++-.+.
T Consensus 161 ~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 161 DKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred cccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchh
Confidence 0012689999999999999999999998 79999999987544
No 166
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.69 E-value=0.0027 Score=63.82 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=78.9
Q ss_pred CcCEEEEeccCC---------ChHHHHHHHHHHHH-cC-----CcEEEEcC---C---HHHHHHHhccCCCcEEeecccc
Q 015899 261 GADAVLLIAAVL---------PDLDIRYMTKICKL-LG-----LTALVEVH---D---EREMDRVLGIEGIELIGINNRN 319 (398)
Q Consensus 261 GADaVLLiaaiL---------~~~~L~~Li~~a~~-LG-----L~~LVEVh---t---~eEl~rAl~l~Ga~iIGINnRd 319 (398)
+||++-|....- .++.+.++++..++ .+ +.++|-+. + ..++-+++.-.|++.|-+.|+.
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 599999977532 23457777777664 33 66777664 2 2333333332499988876653
Q ss_pred Ccc--------------ccc--ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC-CC
Q 015899 320 LET--------------FEV--DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QD 382 (398)
Q Consensus 320 L~t--------------f~v--Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~ 382 (398)
... ++- ....+.+.+..++.. + +.++++++.|||.|++|+.++..+|||+|-||++++. .+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-~-~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP 317 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-T-GGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGP 317 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-h-CCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCc
Confidence 211 110 011122223222111 1 2358999999999999999999999999999999976 37
Q ss_pred ChHHHHH
Q 015899 383 DPGKGIT 389 (398)
Q Consensus 383 dp~~~i~ 389 (398)
+....+.
T Consensus 318 ~~~~~i~ 324 (327)
T cd04738 318 GLVKRIK 324 (327)
T ss_pred HHHHHHH
Confidence 6655543
No 167
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.67 E-value=0.00076 Score=68.44 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=90.0
Q ss_pred HHHHHHHc--CcCEEEEeccCCChHHHHHHHHHHHH--cCCcEEEE-cCCHHHHHHHhccCCCcEE--e------ecccc
Q 015899 253 QIYYARTK--GADAVLLIAAVLPDLDIRYMTKICKL--LGLTALVE-VHDEREMDRVLGIEGIELI--G------INNRN 319 (398)
Q Consensus 253 QI~eAr~~--GADaVLLiaaiL~~~~L~~Li~~a~~--LGL~~LVE-Vht~eEl~rAl~l~Ga~iI--G------INnRd 319 (398)
.+.+..++ |+|+|.++.+-=..+-..++++..++ .+..++.- |-|.+.++.++++ ||+.| | .+.|.
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a-GAD~ikVgiGpGSicttR~ 189 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS-GADIVKVGIGPGSVCTTRT 189 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc-CCCEEEEcccCCCcccCce
Confidence 45555566 59999999886544445666666665 37888998 9999999999997 99965 4 23666
Q ss_pred Ccccc-cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 320 LETFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 320 L~tf~-vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++... .-+....+.++.. ...++++|+-|||.+.-|+.+...+|||+|.+|.-+-.
T Consensus 190 ~~Gvg~pqltAv~~~a~aa-----~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 190 KTGVGYPQLSAVIECADAA-----HGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred eCCCCcCHHHHHHHHHHHh-----ccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence 66665 3344444444432 12378999999999999999999999999999955543
No 168
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.67 E-value=0.002 Score=66.59 Aligned_cols=145 Identities=17% Similarity=0.114 Sum_probs=86.9
Q ss_pred CCcEEeccccC-CHHHHH----HHHHcCcCEEEEeccC-------------C-ChHHHHHHHHHHHH-cCCcEEEEcC--
Q 015899 239 KCPLLCKEFIV-DAWQIY----YARTKGADAVLLIAAV-------------L-PDLDIRYMTKICKL-LGLTALVEVH-- 296 (398)
Q Consensus 239 ~lPVL~KDFIi-d~~QI~----eAr~~GADaVLLiaai-------------L-~~~~L~~Li~~a~~-LGL~~LVEVh-- 296 (398)
+.||+..=+.- ++.++. .+..+|||+|=|.... + .++.+.++++..++ ....++|-+.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~ 178 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN 178 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 47766443333 333222 2245799999997653 1 23457778877765 4677777665
Q ss_pred --CHHHHHHHhccCCCcEEeeccccCcccccChh------------------------hHHHHhhhhcccccccCCceEE
Q 015899 297 --DEREMDRVLGIEGIELIGINNRNLETFEVDNS------------------------NTKKLLEGERGEIIRQKNIIVV 350 (398)
Q Consensus 297 --t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~------------------------~t~~L~~~i~~~~i~~~~v~vV 350 (398)
+..++-+++.-.|++-|-..|+-.....+|++ .+.+.+..+... +.-.++++|
T Consensus 179 ~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-~~~~~ipIi 257 (420)
T PRK08318 179 ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-PETRGLPIS 257 (420)
T ss_pred cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-cccCCCCEE
Confidence 44455454333488866543332221112211 122333322110 100268999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccC-CCCh
Q 015899 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDP 384 (398)
Q Consensus 351 AESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp 384 (398)
+-|||.|.+|+.+++.+||++|-||++++. .++.
T Consensus 258 g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~i 292 (420)
T PRK08318 258 GIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRI 292 (420)
T ss_pred eecCcCCHHHHHHHHHhCCChheeeeeeccCCchh
Confidence 999999999999999999999999999998 4544
No 169
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.67 E-value=0.00091 Score=69.08 Aligned_cols=176 Identities=19% Similarity=0.188 Sum_probs=103.2
Q ss_pred ceEEEEecc-CCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEecc-CC---------cCCCCHHHHHHH----HhcCCCCc
Q 015899 177 PALIAEVKK-ASPSRGILREDFDPVEIARSYEKGGAACLSILTD-EK---------YFKGSFENLEAV----RSAGVKCP 241 (398)
Q Consensus 177 ~~vIAEvKr-aSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd-~~---------~F~Gs~edL~~I----r~a~v~lP 241 (398)
..||+=+-- .| ..+..++|+..++.||++|=++.- |+ .++-.++.+..| |+. +++|
T Consensus 114 ~pvIaSi~~~~s--------~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iP 184 (385)
T PLN02495 114 RILIASIMEEYN--------KDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVP 184 (385)
T ss_pred CcEEEEccCCCC--------HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCc
Confidence 467887642 22 246778999999999999988631 11 133467777544 765 7899
Q ss_pred EEecc--ccCCHHHHHH-HHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCC-cEEeecc
Q 015899 242 LLCKE--FIVDAWQIYY-ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGI-ELIGINN 317 (398)
Q Consensus 242 VL~KD--FIid~~QI~e-Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga-~iIGINn 317 (398)
|+.|= .+.+.-++.+ +...|||+|.++-++.+. ++++ +.+..-. ..+.+. ..=|...
T Consensus 185 v~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~------------~~ID----~~t~~p~---~~~~~~~~~GGlSG 245 (385)
T PLN02495 185 VWAKMTPNITDITQPARVALKSGCEGVAAINTIMSV------------MGIN----LDTLRPE---PCVEGYSTPGGYSS 245 (385)
T ss_pred eEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcc------------cccc----cccCccc---cccCCCCCCCCccc
Confidence 98762 1234445555 578999999999887642 1111 1110000 000000 0001111
Q ss_pred ccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC-CCh
Q 015899 318 RNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDP 384 (398)
Q Consensus 318 RdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp 384 (398)
.-++- +-+....++.+.+.. .+ +.++++++-|||.|.+|+.+...+||++|=|++++|.. +..
T Consensus 246 ~alkp--iAl~~v~~i~~~~~~-~~-~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~v 309 (385)
T PLN02495 246 KAVRP--IALAKVMAIAKMMKS-EF-PEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPL 309 (385)
T ss_pred hhhhH--HHHHHHHHHHHHHhh-hc-cCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHH
Confidence 11111 112223334333211 01 12578999999999999999999999999999999986 443
No 170
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.67 E-value=0.0018 Score=64.27 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHc--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 276 ~L~~Li~~a~~L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
.+.+.++.+++. +..+-|||.|++|+..++++ |+++|..-|-+ ++...+.++.++. . ..++.+-+.|
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~-GaDiI~lDn~~-------~e~l~~~v~~l~~--~-~~~~~leasG 242 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQA-SPDILQLDKFT-------PQQLHHLHERLKF--F-DHIPTLAAAG 242 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CcCEEEECCCC-------HHHHHHHHHHHhc--c-CCCEEEEEEC
Confidence 577888888875 68899999999999999997 99999987533 3344444443211 1 2467888889
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccc
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGea 377 (398)
|| +++.+..+...|+|.+.+|.-
T Consensus 243 GI-~~~ni~~ya~~GvD~is~gal 265 (277)
T TIGR01334 243 GI-NPENIADYIEAGIDLFITSAP 265 (277)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCcc
Confidence 99 999999999999999998863
No 171
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.66 E-value=0.00022 Score=73.53 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=74.5
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl 305 (398)
+.+||+.+|+. +++||+.|.. .+..+...+..+|||+|.+-- -..
T Consensus 233 tW~di~~lr~~-~~~pvivKgV-~s~~dA~~a~~~Gvd~I~Vs~--hGG------------------------------- 277 (381)
T PRK11197 233 SWKDLEWIRDF-WDGPMVIKGI-LDPEDARDAVRFGADGIVVSN--HGG------------------------------- 277 (381)
T ss_pred CHHHHHHHHHh-CCCCEEEEec-CCHHHHHHHHhCCCCEEEECC--CCC-------------------------------
Confidence 67999999997 9999999997 889999999999999998421 111
Q ss_pred ccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 306 ~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
|.+...-.-+....++.+. + ..++.+++-|||.+..|+.++..+||++|.+|..++..
T Consensus 278 ------------r~~d~~~~t~~~L~~i~~a-----~-~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 278 ------------RQLDGVLSSARALPAIADA-----V-KGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYA 335 (381)
T ss_pred ------------CCCCCcccHHHHHHHHHHH-----h-cCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHH
Confidence 1111100001111122221 1 23578999999999999999999999999999998864
No 172
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.66 E-value=0.0014 Score=69.90 Aligned_cols=182 Identities=11% Similarity=0.083 Sum_probs=112.6
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC--CHHHHHHHHhcCCCCcEEecc---------cc-C-CHH-HHHHHH
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG--SFENLEAVRSAGVKCPLLCKE---------FI-V-DAW-QIYYAR 258 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G--s~edL~~Ir~a~v~lPVL~KD---------FI-i-d~~-QI~eAr 258 (398)
+.++.+..+..+.+.+.+...+=|+.+.+-.-| +..|+...+. -|.-+|| .+ . +.+ .+....
T Consensus 176 v~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~----~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv 251 (502)
T PRK07107 176 ANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKE----NPLELLDSSKRYVVGAGINTRDYAERVPALV 251 (502)
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhccc----ChhhhhhhccCeeeeeccChhhHHHHHHHHH
Confidence 466778888899999999999999876554445 4455544332 2332223 11 1 222 344456
Q ss_pred HcCcCEEEEeccCCChHHHHHHHHHHHH-cCC-cEEEE--cCCHHHHHHHhccCCCcEEee--c------cccCcccccC
Q 015899 259 TKGADAVLLIAAVLPDLDIRYMTKICKL-LGL-TALVE--VHDEREMDRVLGIEGIELIGI--N------NRNLETFEVD 326 (398)
Q Consensus 259 ~~GADaVLLiaaiL~~~~L~~Li~~a~~-LGL-~~LVE--Vht~eEl~rAl~l~Ga~iIGI--N------nRdL~tf~vD 326 (398)
++|+|.|.+..+--......+.++..+. .+. -.+.- |-|.+.++.++++ ||+.|=| . .|......+-
T Consensus 252 ~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a-GAd~I~vg~g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 252 EAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA-GADFVKVGIGGGSICITREQKGIGRG 330 (502)
T ss_pred HhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc-CCCEEEECCCCCcCcccccccCCCcc
Confidence 7899999987443322223445555554 553 22333 7899999999997 9998733 2 3433333222
Q ss_pred -hhhHHHHhhhhcccccc--cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 327 -NSNTKKLLEGERGEIIR--QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 327 -l~~t~~L~~~i~~~~i~--~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
+....++....+. .+. ...+++|+-|||.+.-|+.++..+|||+|.+|..|-.
T Consensus 331 ~~~ai~~~~~a~~~-~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 331 QATALIEVAKARDE-YFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred HHHHHHHHHHHHHH-HHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 2222333332100 000 1137999999999999999999999999999998865
No 173
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.65 E-value=0.0025 Score=62.55 Aligned_cols=179 Identities=23% Similarity=0.287 Sum_probs=113.5
Q ss_pred HHHHHHHHHcCCcEEEEec--cCCcCCC-CHHHHH-------HHHhcCCCCcE----EeccccCCHHHHHHHHHcCcCEE
Q 015899 200 VEIARSYEKGGAACLSILT--DEKYFKG-SFENLE-------AVRSAGVKCPL----LCKEFIVDAWQIYYARTKGADAV 265 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLT--d~~~F~G-s~edL~-------~Ir~a~v~lPV----L~KDFIid~~QI~eAr~~GADaV 265 (398)
.+=|+.|+++|+++|-|=. |-.|.+. +++-+. ++|+. +++|+ |+.| ...-+.-|.+.|||-|
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~-~~~p~GVnvL~nd---~~aalaiA~A~ga~FI 107 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRRE-VSVPVGVNVLRND---PKAALAIAAATGADFI 107 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHh-CCCCEEeeeecCC---CHHHHHHHHHhCCCEE
Confidence 3447889999999999842 2223333 233332 23554 68884 5555 3345777888999987
Q ss_pred EEec---cCCC-----hHHHHHHHHHHHHcCCcE--EEEcC----------CHHHHH-HHhccCCCcEEeeccccCcccc
Q 015899 266 LLIA---AVLP-----DLDIRYMTKICKLLGLTA--LVEVH----------DEREMD-RVLGIEGIELIGINNRNLETFE 324 (398)
Q Consensus 266 LLia---aiL~-----~~~L~~Li~~a~~LGL~~--LVEVh----------t~eEl~-rAl~l~Ga~iIGINnRdL~tf~ 324 (398)
=+.+ +..+ +.+-.+++++-+.+|-++ |.+|| +.+|.. .+.+-.++|-|-++... +.-.
T Consensus 108 Rv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~-TG~~ 186 (254)
T PF03437_consen 108 RVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA-TGEP 186 (254)
T ss_pred EecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc-cCCC
Confidence 6432 1222 234566777766665554 56665 344443 33222478888777532 2346
Q ss_pred cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC-----hHHHHHhhhc
Q 015899 325 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD-----PGKGITGLFG 393 (398)
Q Consensus 325 vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d-----p~~~i~~L~~ 393 (398)
+|++...+..+. .+++++..||+ |++.+..+++. |||++||++|.+..+ -.+.+++|+.
T Consensus 187 ~~~~~l~~vr~~--------~~~PVlvGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 187 PDPEKLKRVREA--------VPVPVLVGSGV-TPENIAEYLSY-ADGAIVGSYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred CCHHHHHHHHhc--------CCCCEEEecCC-CHHHHHHHHHh-CCEEEEeeeeeeCCEeCCcCCHHHHHHHHH
Confidence 677776666554 12789999999 99999998877 999999999997554 2445555543
No 174
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.65 E-value=0.002 Score=65.08 Aligned_cols=176 Identities=20% Similarity=0.182 Sum_probs=106.3
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHH---HHHHHHhcCCCCcEEeccccCC-----HHHHHHH-HHcCcCEEEEec
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSFE---NLEAVRSAGVKCPLLCKEFIVD-----AWQIYYA-RTKGADAVLLIA 269 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~e---dL~~Ir~a~v~lPVL~KDFIid-----~~QI~eA-r~~GADaVLLia 269 (398)
-.++|....+.|..+- + .....+--+++ ....+|+...+.|++..=|... ..++.++ ...+||++-+..
T Consensus 72 n~~La~~a~~~g~~~~-~-Gs~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~l 149 (333)
T TIGR02151 72 NRNLARAARELGIPMG-V-GSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHL 149 (333)
T ss_pred HHHHHHHHHHcCCCeE-E-cCchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcC
Confidence 4578888888884422 2 11111111222 3466777347999997554322 2234444 345888887765
Q ss_pred cCC-------ChHHHH---HHHHHHH-HcCCcEEEE-c---CCHHHHHHHhccCCCcEEeeccccCcccc----------
Q 015899 270 AVL-------PDLDIR---YMTKICK-LLGLTALVE-V---HDEREMDRVLGIEGIELIGINNRNLETFE---------- 324 (398)
Q Consensus 270 aiL-------~~~~L~---~Li~~a~-~LGL~~LVE-V---ht~eEl~rAl~l~Ga~iIGINnRdL~tf~---------- 324 (398)
-.+ .+.+.+ +.++..+ .++..++|- + .+.+++..+.++ |++.|-+-++.-+++.
T Consensus 150 n~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~a-Gvd~I~Vsg~gGt~~~~ie~~r~~~~ 228 (333)
T TIGR02151 150 NVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADA-GVSAIDVAGAGGTSWAQVENYRAKGS 228 (333)
T ss_pred cccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHc-CCCEEEECCCCCCcccchhhhccccc
Confidence 422 111232 3333333 457777764 3 478888888887 9999988776533211
Q ss_pred ------cC--hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 325 ------VD--NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 325 ------vD--l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.| +.+...|... +. + ..++++|+.|||.+++|+.++..+|||+|-+|.++++.
T Consensus 229 ~~~~~~~~~g~~t~~~l~~~-~~--~-~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~ 289 (333)
T TIGR02151 229 NLASFFNDWGIPTAASLLEV-RS--D-APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKA 289 (333)
T ss_pred ccchhhhcccHhHHHHHHHH-Hh--c-CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHH
Confidence 11 2222333221 11 0 13589999999999999999999999999999999853
No 175
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.64 E-value=0.00048 Score=67.78 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=62.8
Q ss_pred CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc
Q 015899 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 367 (398)
Q Consensus 288 GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 367 (398)
++-+-|||||.+|+..|++. |+++|++.|-. ++...++.+.+ +..+++++.||| |++.+..+.+.
T Consensus 182 ~~~Igvev~s~eea~~A~~~-gaDyI~ld~~~-------~e~l~~~~~~~------~~~ipi~AiGGI-~~~ni~~~a~~ 246 (268)
T cd01572 182 TLKIEVEVETLEQLKEALEA-GADIIMLDNMS-------PEELREAVALL------KGRVLLEASGGI-TLENIRAYAET 246 (268)
T ss_pred CCeEEEEECCHHHHHHHHHc-CCCEEEECCcC-------HHHHHHHHHHc------CCCCcEEEECCC-CHHHHHHHHHc
Confidence 46688999999999999997 99999998643 45555555431 125789999999 89999999999
Q ss_pred CCCEEEEccccc
Q 015899 368 GVKAVLVGESIV 379 (398)
Q Consensus 368 GadaVLVGeaLm 379 (398)
|+|++-||.-..
T Consensus 247 Gvd~Iav~sl~~ 258 (268)
T cd01572 247 GVDYISVGALTH 258 (268)
T ss_pred CCCEEEEEeeec
Confidence 999999997554
No 176
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.64 E-value=0.00019 Score=69.48 Aligned_cols=179 Identities=22% Similarity=0.241 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEecc-ccCCH-HHHH---HHHHc-CcCEEE
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKE-FIVDA-WQIY---YARTK-GADAVL 266 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KD-FIid~-~QI~---eAr~~-GADaVL 266 (398)
.-++..+.++.+..|+..+-|--...-..+ +...+..++. .++-+|-.- +-.+. .-|. .||++ |-|-|=
T Consensus 18 y~s~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~--~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIK 95 (247)
T PF05690_consen 18 YPSPEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDR--SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIK 95 (247)
T ss_dssp SSSHHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTC--CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEE
T ss_pred CCCHHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcc--cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 447888999999999998888644443333 2333444442 244455110 00111 1122 34544 777777
Q ss_pred EeccCCCh-----HHHHHHHHHHHHc---CCcEEEEcC-CHHHHHHHhccCCCcEEeec------cccCcccccChhhHH
Q 015899 267 LIAAVLPD-----LDIRYMTKICKLL---GLTALVEVH-DEREMDRVLGIEGIELIGIN------NRNLETFEVDNSNTK 331 (398)
Q Consensus 267 LiaaiL~~-----~~L~~Li~~a~~L---GL~~LVEVh-t~eEl~rAl~l~Ga~iIGIN------nRdL~tf~vDl~~t~ 331 (398)
|=+ ++| .|-.++++.|+.| |..+|-=++ |+--.++..++ |+..|.-- ++.+.+ .....
T Consensus 96 LEV--i~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-GcaavMPlgsPIGSg~Gi~n----~~~l~ 168 (247)
T PF05690_consen 96 LEV--IGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-GCAAVMPLGSPIGSGRGIQN----PYNLR 168 (247)
T ss_dssp E----BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEBEEBSSSTTT---SST----HHHHH
T ss_pred EEE--eCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-CCCEEEecccccccCcCCCC----HHHHH
Confidence 632 322 1356677777754 999998776 56666666676 88765321 244432 23334
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
.+++. .+++||...||.+|.|+..++++|||||||.+++.++.||..-.+.+
T Consensus 169 ~i~~~--------~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af 220 (247)
T PF05690_consen 169 IIIER--------ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAF 220 (247)
T ss_dssp HHHHH--------GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HHHHh--------cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHH
Confidence 44443 36889999999999999999999999999999999999998776655
No 177
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=97.58 E-value=0.00038 Score=66.00 Aligned_cols=183 Identities=21% Similarity=0.128 Sum_probs=107.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCH-HHHHHHHHcCcCEEEEecc
Q 015899 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA-WQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 192 ~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~-~QI~eAr~~GADaVLLiaa 270 (398)
.++...||.++|.+|...||.-|=+- |=.+-.|.-+|+..+|+...-.|++ -|+.+.. ..+.. +..=|+...+.+.
T Consensus 31 ~~~~s~dP~eia~~lr~rgar~vYiA-DLdaI~g~g~n~d~i~~l~~~~~~i-vD~Gv~dL~s~~~-~l~~~~~~vv~TE 107 (229)
T COG1411 31 RYCLSDDPLEIAEALRERGARFVYIA-DLDAILGGGDNADTIRELSSLEKVI-VDVGVRDLESHAH-RLIPAETAVVGTE 107 (229)
T ss_pred eecCCCChHHHHHHHhhccCceEEee-ehHHHhcCCCcHHHHHHHHhhhhhe-eecccccccCHHH-hcCCCcceeeccc
Confidence 56677899999999999999888774 4455666657777777642223433 3333321 12222 2334555556555
Q ss_pred CCChHHHHHHHHHHHHcCCcE--------EEEcCCHHHHHHHh-ccCCCcEEeeccccCccc-ccChhhHHHHhhhhccc
Q 015899 271 VLPDLDIRYMTKICKLLGLTA--------LVEVHDEREMDRVL-GIEGIELIGINNRNLETF-EVDNSNTKKLLEGERGE 340 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~--------LVEVht~eEl~rAl-~l~Ga~iIGINnRdL~tf-~vDl~~t~~L~~~i~~~ 340 (398)
.+.+.++.+- ..| ..++++ |+| +..|.-+-+ ......+|=+.---.-|. .+|.+....++..
T Consensus 108 t~e~~e~~e~-~r~-vvslD~k~~~Ll~~~~e--d~le~Vk~l~~~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~---- 179 (229)
T COG1411 108 TLEDTEEDEE-GRI-VVSLDVKGGELLGPWLE--DFLETVKDLNYRRDPGLIVLDIGAVGTKSGPDYELLTKVLEL---- 179 (229)
T ss_pred hhhhhhhhhc-cce-EEEEecCCCeecCCCch--hHHHHHHHHhccCCCCeEEEEccccccccCCCHHHHHHHHHh----
Confidence 5544322111 000 112221 211 222222211 111223443332222233 3777776666654
Q ss_pred ccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHH
Q 015899 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGIT 389 (398)
Q Consensus 341 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~ 389 (398)
..-+|+-.|||..+||++.+...|++|||||++|.+...|-+..+
T Consensus 180 ----s~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~ 224 (229)
T COG1411 180 ----SEHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ 224 (229)
T ss_pred ----ccCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence 244688899999999999999999999999999999999887664
No 178
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.57 E-value=0.0054 Score=59.74 Aligned_cols=164 Identities=23% Similarity=0.253 Sum_probs=105.0
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC------CHHH---H----HHHHhcCCCCc----EEeccccCCHHHHHHHHHcCcC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG------SFEN---L----EAVRSAGVKCP----LLCKEFIVDAWQIYYARTKGAD 263 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G------s~ed---L----~~Ir~a~v~lP----VL~KDFIid~~QI~eAr~~GAD 263 (398)
.=|.+|+++|+++|-| ++||.= +++- + +.|+.. +.+| ||+.|- +..+.| |++.|||
T Consensus 38 ~dA~~leegG~Daviv---EN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~-v~iPvGvNVLrNd~-vaA~~I--A~a~gA~ 110 (263)
T COG0434 38 RDAAALEEGGVDAVIV---ENYGDAPFLKDVGPETVAAMAVIVREVVRE-VSIPVGVNVLRNDA-VAALAI--AYAVGAD 110 (263)
T ss_pred HHHHHHHhCCCcEEEE---eccCCCCCCCCCChHHHHHHHHHHHHHHHh-ccccceeeeecccc-HHHHHH--HHhcCCC
Confidence 3488999999999988 444422 1222 1 122333 6788 488885 344444 7779999
Q ss_pred EEEEecc---CCCh-----HHHHHHHHHHHHc--CCcEEEEcC----------CHHHHHHH-hccCCCcEEeeccccCcc
Q 015899 264 AVLLIAA---VLPD-----LDIRYMTKICKLL--GLTALVEVH----------DEREMDRV-LGIEGIELIGINNRNLET 322 (398)
Q Consensus 264 aVLLiaa---iL~~-----~~L~~Li~~a~~L--GL~~LVEVh----------t~eEl~rA-l~l~Ga~iIGINnRdL~t 322 (398)
-|=..+- .+++ .+-.++.++-+.| ++.+|.+|| +.+|.-+= ++-.++|-+-++..- +.
T Consensus 111 FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~-TG 189 (263)
T COG0434 111 FIRVNVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR-TG 189 (263)
T ss_pred EEEEEeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc-CC
Confidence 8764332 2222 2356666665666 477788887 55554332 222366755555322 23
Q ss_pred cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 323 FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 323 f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
-.+|++......+. .+++++..||+ +++.+..+++. +|||+||++|-+..
T Consensus 190 ~~~d~~el~~a~~~--------~~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK~~G 239 (263)
T COG0434 190 SPPDLEELKLAKEA--------VDTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLKKGG 239 (263)
T ss_pred CCCCHHHHHHHHhc--------cCCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEccCC
Confidence 46777764444332 35899999999 89999999999 99999999998876
No 179
>PLN02979 glycolate oxidase
Probab=97.57 E-value=0.00038 Score=71.33 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=72.9
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl 305 (398)
+.+||+.+|+. .++||+.|.. .++.....+..+|+|+|.+--. ..
T Consensus 211 tW~dl~wlr~~-~~~PvivKgV-~~~~dA~~a~~~Gvd~I~Vsnh--GG------------------------------- 255 (366)
T PLN02979 211 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSNH--GA------------------------------- 255 (366)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHhcCCCEEEECCC--Cc-------------------------------
Confidence 57999999997 8999999997 6888899999999999955322 11
Q ss_pred ccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 306 ~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
|.+... +. +...+..++.. + ...+.+++-|||.+..|+.+...+||++|.||..++.
T Consensus 256 ------------rqld~~---p~-t~~~L~ei~~~-~-~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 256 ------------RQLDYV---PA-TISALEEVVKA-T-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred ------------CCCCCc---hh-HHHHHHHHHHH-h-CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 011000 11 12222211110 1 1347899999999999999999999999999998874
No 180
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.56 E-value=0.0033 Score=62.31 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=78.4
Q ss_pred CcCEEEEeccC---------C-ChHHHHHHHHHHHH-cCCcEEEEcC---CHHHHHHHhc---cC--CCc-EEeeccc--
Q 015899 261 GADAVLLIAAV---------L-PDLDIRYMTKICKL-LGLTALVEVH---DEREMDRVLG---IE--GIE-LIGINNR-- 318 (398)
Q Consensus 261 GADaVLLiaai---------L-~~~~L~~Li~~a~~-LGL~~LVEVh---t~eEl~rAl~---l~--Ga~-iIGINnR-- 318 (398)
|||+|=|.... . +++.+.++++..++ ....++|-+. +.+++.++.+ .. |++ ++.+|.-
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~ 198 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGN 198 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCc
Confidence 79999998873 1 34558888887775 4777777776 3333333322 23 555 4444422
Q ss_pred ----cCcccccC---------------hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 015899 319 ----NLETFEVD---------------NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 319 ----dL~tf~vD---------------l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 379 (398)
|..+.... ...+.+.+..++.. + +.++++|+-|||.|.+|+.++..+||++|-||++++
T Consensus 199 ~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~-~-~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 199 GLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRL-L-PSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred cccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHh-c-CCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 11111110 01122222322111 1 235899999999999999999999999999999999
Q ss_pred C-CCChHHHHH
Q 015899 380 K-QDDPGKGIT 389 (398)
Q Consensus 380 k-~~dp~~~i~ 389 (398)
. .++....+.
T Consensus 277 ~~gp~~~~~i~ 287 (294)
T cd04741 277 KEGPKVFARIE 287 (294)
T ss_pred hcCchHHHHHH
Confidence 5 676555543
No 181
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.56 E-value=0.0017 Score=64.26 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHHHHHcCcCEEEEeccC-------CCh-----------------HHHHHHHHHHHH-c--CCcEEEEcC---------C
Q 015899 254 IYYARTKGADAVLLIAAV-------LPD-----------------LDIRYMTKICKL-L--GLTALVEVH---------D 297 (398)
Q Consensus 254 I~eAr~~GADaVLLiaai-------L~~-----------------~~L~~Li~~a~~-L--GL~~LVEVh---------t 297 (398)
...|..+|+|+|=|.++- |++ .-+.+.++..++ + ++.+.+-++ +
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 345667899999887651 111 113455555553 4 455666555 3
Q ss_pred HHHH----HHHhccCCCcEEeeccccCcccc-----------cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHH
Q 015899 298 EREM----DRVLGIEGIELIGINNRNLETFE-----------VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 362 (398)
Q Consensus 298 ~eEl----~rAl~l~Ga~iIGINnRdL~tf~-----------vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~ 362 (398)
.+|. +.+.++ |++.|-+.++...... .+++...++.+. .++++++.|||.|++++.
T Consensus 227 ~~e~~~la~~l~~~-G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~--------~~iPVi~~Ggi~t~~~a~ 297 (327)
T cd02803 227 LEEAIEIAKALEEA-GVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA--------VKIPVIAVGGIRDPEVAE 297 (327)
T ss_pred HHHHHHHHHHHHHc-CCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH--------CCCCEEEeCCCCCHHHHH
Confidence 4443 334444 8999988876654321 223333444332 257899999999999999
Q ss_pred HHHHc-CCCEEEEcccccCCCChHHHHH
Q 015899 363 YVQEA-GVKAVLVGESIVKQDDPGKGIT 389 (398)
Q Consensus 363 ~l~~~-GadaVLVGeaLmk~~dp~~~i~ 389 (398)
++.+. |+|.|-+|.+++..+|..+.++
T Consensus 298 ~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 298 EILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 99998 7999999999999999877765
No 182
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.55 E-value=0.0004 Score=70.91 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=72.9
Q ss_pred CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHH
Q 015899 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304 (398)
Q Consensus 225 Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rA 304 (398)
.++++|+.+|+. .++||+.|.. +++..+..+..+|+|+|.+-- -...+
T Consensus 212 ~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G~~~i~vs~--hGGr~---------------------------- 259 (356)
T PF01070_consen 212 LTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAGVDGIDVSN--HGGRQ---------------------------- 259 (356)
T ss_dssp -SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT-SEEEEES--GTGTS----------------------------
T ss_pred CCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcCCCEEEecC--CCccc----------------------------
Confidence 467999999997 9999999997 899999999999999988743 22222
Q ss_pred hccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 305 LGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 305 l~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
++. | .. -++...++... + +.++.+++-|||.+..|+.+...+||++|.+|..++..
T Consensus 260 ~d~-~----------~~----~~~~L~~i~~~-----~-~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~ 315 (356)
T PF01070_consen 260 LDW-G----------PP----TIDALPEIRAA-----V-GDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYA 315 (356)
T ss_dssp STT-S-----------B----HHHHHHHHHHH-----H-TTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHH
T ss_pred Ccc-c----------cc----cccccHHHHhh-----h-cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHH
Confidence 111 1 11 12222333332 1 34689999999999999999999999999999988764
No 183
>PRK08508 biotin synthase; Provisional
Probab=97.55 E-value=0.015 Score=57.26 Aligned_cols=193 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCc-CCCCHHHHH----HHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc-
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKY-FKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~-F~Gs~edL~----~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa- 270 (398)
.+..+.|+...+.|+..++++|.... ..-.++++. .||+...++.+..-....++.++.+.+.+|+|.+.+...
T Consensus 43 eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt 122 (279)
T PRK08508 43 EQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLET 122 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccc
Confidence 34455555556679999998764442 233455554 445432245554455667899999999999999996422
Q ss_pred -------CC---ChHHHHHHHHHHHHcCCcE----EEEcC-CHHHHH----HHhccCCCcEEeeccccC------ccccc
Q 015899 271 -------VL---PDLDIRYMTKICKLLGLTA----LVEVH-DEREMD----RVLGIEGIELIGINNRNL------ETFEV 325 (398)
Q Consensus 271 -------iL---~~~~L~~Li~~a~~LGL~~----LVEVh-t~eEl~----rAl~l~Ga~iIGINnRdL------~tf~v 325 (398)
+. +.++.-+.++.++++|+++ ++-.. +.+|.. ...++ +.+.|.+|.-.- .....
T Consensus 123 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L-~~~svpl~~~~p~~~t~~~~~~~ 201 (279)
T PRK08508 123 SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASL-SPHSTPINFFIPNPALPLKAPTL 201 (279)
T ss_pred hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcC-CCCEEeeCCcCCCCCCCCCCCCC
Confidence 12 2344555777899999987 44432 444433 34466 778788873221 11123
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecC-CCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESG-LFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESG-I~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.....+++...| .+.|.-.+.++.|- ..-.+.-..+..+|++++++|.-|+......+.=.+++
T Consensus 202 ~~~~~lr~iAv~R--l~lp~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~ 267 (279)
T PRK08508 202 SADEALEIVRLAK--EALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKL 267 (279)
T ss_pred CHHHHHHHHHHHH--HHCCCceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHH
Confidence 4444444443322 12343334444433 22234445677899999999999998877665555554
No 184
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=97.53 E-value=0.0025 Score=60.50 Aligned_cols=160 Identities=22% Similarity=0.339 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEE---e---ccccCCHHH-------HHHHHHcCcCE
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL---C---KEFIVDAWQ-------IYYARTKGADA 264 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL---~---KDFIid~~Q-------I~eAr~~GADa 264 (398)
+-|...+++||+.|-+...-. .+| |+..++.+++. +++||- | .||..++.+ |..++.+|||+
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~-~GGlTPS~g~i~~~~~~-~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG 88 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLE-VGGLTPSLGLIRQAREA-VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADG 88 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGG-GT-B---HHHHHHHHHH-TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHcCCCEEEECCCcc-CCCcCcCHHHHHHHHhh-cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCe
Confidence 446677899999999976332 345 88899999886 899985 2 589988864 66889999999
Q ss_pred EEEecc----CCChHHHHHHHHHHHHcCCcEEE-----EcCCHHH-HHHHhccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 265 VLLIAA----VLPDLDIRYMTKICKLLGLTALV-----EVHDERE-MDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 265 VLLiaa----iL~~~~L~~Li~~a~~LGL~~LV-----EVht~eE-l~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
+.+.+= -++.+.+++|++.|+ ||.+-. ++.+..+ ++...++ |++-|=+..-. .+..-.++...+|.
T Consensus 89 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~l-G~~rVLTSGg~-~~a~~g~~~L~~lv 164 (201)
T PF03932_consen 89 FVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIEL-GFDRVLTSGGA-PTALEGIENLKELV 164 (201)
T ss_dssp EEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHH-T-SEEEESTTS-SSTTTCHHHHHHHH
T ss_pred eEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhc-CCCEEECCCCC-CCHHHHHHHHHHHH
Confidence 999872 134456888988876 666532 2334444 3444465 66644333221 23333466667776
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHH-cCCCEEE
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQE-AGVKAVL 373 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~-~GadaVL 373 (398)
... ...+.++..||| +++.+..+.+ .|+..+=
T Consensus 165 ~~a------~~~i~Im~GgGv-~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 165 EQA------KGRIEIMPGGGV-RAENVPELVEETGVREIH 197 (201)
T ss_dssp HHH------TTSSEEEEESS---TTTHHHHHHHHT-SEEE
T ss_pred HHc------CCCcEEEecCCC-CHHHHHHHHHhhCCeEEe
Confidence 642 235679999999 5666777765 8988763
No 185
>PRK08185 hypothetical protein; Provisional
Probab=97.52 E-value=0.015 Score=57.82 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcE--------------EE---E-
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTA--------------LV---E- 294 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~--------------LV---E- 294 (398)
.++|| |.=|-.-+..++.+|...|.+.|.++.+-|+.++ ..+++++|+..|+.+ .+ +
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~ 146 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEI 146 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccc
Confidence 57897 5788888889999999999999999999998655 556667777655544 11 1
Q ss_pred -cCCHHHHHHHhccCCCcEEeec----cccCcc---cccChhhHHHHhhhhcccccccCCceEEEecCCCC-HHHHHHHH
Q 015899 295 -VHDEREMDRVLGIEGIELIGIN----NRNLET---FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFT-PDDIAYVQ 365 (398)
Q Consensus 295 -Vht~eEl~rAl~l~Ga~iIGIN----nRdL~t---f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t-~eD~~~l~ 365 (398)
.|+++|+.+..+..|++.+.+. .-.+.+ -..|++...++.+. .++++|.=||+.. .++++++.
T Consensus 147 ~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~--------~~iPLVlHGgsg~~~e~~~~ai 218 (283)
T PRK08185 147 IYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER--------VDIPLVLHGGSANPDAEIAESV 218 (283)
T ss_pred cCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh--------hCCCEEEECCCCCCHHHHHHHH
Confidence 5689999998875589988883 222222 23466666666543 2566777777644 56789999
Q ss_pred HcCCCEEEEcccccC
Q 015899 366 EAGVKAVLVGESIVK 380 (398)
Q Consensus 366 ~~GadaVLVGeaLmk 380 (398)
++|+.-|=|++.|-.
T Consensus 219 ~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 219 QLGVGKINISSDMKY 233 (283)
T ss_pred HCCCeEEEeChHHHH
Confidence 999999999988754
No 186
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.51 E-value=0.00051 Score=66.14 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEcCCHHHHHHHhccCCCcEEeeccccCc--ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCC
Q 015899 293 VEVHDEREMDRVLGIEGIELIGINNRNLE--TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 370 (398)
Q Consensus 293 VEVht~eEl~rAl~l~Ga~iIGINnRdL~--tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gad 370 (398)
+..+++.|+.+.+...|++-|-|.+++-. .-..+++...++.+. .++++++-|||.+.+|++++.+.||+
T Consensus 27 ~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~--------~~ipv~~~GGi~s~~~~~~~l~~Ga~ 98 (253)
T PRK02083 27 RDAGDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ--------VFIPLTVGGGIRSVEDARRLLRAGAD 98 (253)
T ss_pred eecCCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh--------CCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 56778888877776569998888877643 345677777777654 25789999999999999999999999
Q ss_pred EEEEcccccCCCChHHHHHhhhc
Q 015899 371 AVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 371 aVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+|.+|+++++.++..+.+.+.++
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g 121 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFG 121 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcC
Confidence 99999999999887777777664
No 187
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.49 E-value=0.00055 Score=70.29 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=73.3
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHh
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl 305 (398)
+.+||..+|+. .++||+.|.. .++.....+..+|+|+|.+-- -..
T Consensus 212 tW~di~wlr~~-~~~PiivKgV-~~~~dA~~a~~~Gvd~I~Vsn--hGG------------------------------- 256 (367)
T PLN02493 212 SWKDVQWLQTI-TKLPILVKGV-LTGEDARIAIQAGAAGIIVSN--HGA------------------------------- 256 (367)
T ss_pred CHHHHHHHHhc-cCCCEEeecC-CCHHHHHHHHHcCCCEEEECC--CCC-------------------------------
Confidence 67999999997 8999999997 678888899999999996522 121
Q ss_pred ccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 306 ~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
|.+... + .+..++..+... + ...+.+++-|||.+..|+.+...+||++|.||..++-
T Consensus 257 ------------rqld~~---~-~t~~~L~ei~~a-v-~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 257 ------------RQLDYV---P-ATISALEEVVKA-T-QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred ------------CCCCCc---h-hHHHHHHHHHHH-h-CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 101000 0 112222221110 1 2357899999999999999999999999999998883
No 188
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.49 E-value=0.0053 Score=61.83 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=99.3
Q ss_pred CCcEEeccccCCHHHHHHHH----HcCcCEEEEeccC--------------C-ChHHHHHHHHHHHH-cCCcEEEEcCC-
Q 015899 239 KCPLLCKEFIVDAWQIYYAR----TKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-LGLTALVEVHD- 297 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr----~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-LGL~~LVEVht- 297 (398)
+.|+...=|.-++.++.+|. .+|+|.|=|.... + .++.+.++++..++ ++..+-|-+.-
T Consensus 54 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 54 ESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIG 133 (318)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 56666666666776655442 3688888776542 3 33447788877764 56666665531
Q ss_pred ------HH---H-HHHHhccCCCcEEeeccccC--cccc---------cChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 298 ------ER---E-MDRVLGIEGIELIGINNRNL--ETFE---------VDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 298 ------~e---E-l~rAl~l~Ga~iIGINnRdL--~tf~---------vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
.+ + +..+.+. |++.|-|-.|.. ..++ .|.+...++... + .++++|+-|||.
T Consensus 134 ~~~~~~~~~~~~~~~~l~~~-G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-----~--~~ipVi~NGdI~ 205 (318)
T TIGR00742 134 IDPLDSYEFLCDFVEIVSGK-GCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKD-----F--PHLTIEINGGIK 205 (318)
T ss_pred CCCcchHHHHHHHHHHHHHc-CCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHh-----C--CCCcEEEECCcC
Confidence 12 2 3444454 999998887752 2232 255555555543 1 258999999999
Q ss_pred CHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
|++|+.+++. |||+|.||.+++..++....+.+++
T Consensus 206 s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l 240 (318)
T TIGR00742 206 NSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREI 240 (318)
T ss_pred CHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHh
Confidence 9999999996 9999999999999999888877755
No 189
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.47 E-value=0.012 Score=58.69 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHHHHHH----HHhcCCCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEA----VRSAGVKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~----Ir~a~v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
.+.+++++.++..|=-++.......+++.+.. ..+. .++|| |.-|-..+...+.+|..+|.+.|..+++-++.+
T Consensus 33 avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~-~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~e 111 (283)
T PRK07998 33 SILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADK-MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFE 111 (283)
T ss_pred HHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHH-CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHH
Confidence 44455555555554443333222233444432 2233 57897 567777777789999999999999999999864
Q ss_pred ----HHHHHHHHHHHcCCcEEEEc-----------------CCHHHHHHHhccCCCcEEeeccc----cCcccccChhhH
Q 015899 276 ----DIRYMTKICKLLGLTALVEV-----------------HDEREMDRVLGIEGIELIGINNR----NLETFEVDNSNT 330 (398)
Q Consensus 276 ----~L~~Li~~a~~LGL~~LVEV-----------------ht~eEl~rAl~l~Ga~iIGINnR----dL~tf~vDl~~t 330 (398)
..++.+++|+..|+.+=.|+ .+++|+.+..+..|+|.+.+..- .++.-..|++..
T Consensus 112 eNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l 191 (283)
T PRK07998 112 ENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLL 191 (283)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHH
Confidence 37888999999998762222 36667666665348998766532 333345677777
Q ss_pred HHHhhhhcccccccCCceEEE--ecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 331 KKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
.++.+. .++++|- .||+ +.++++++.++|+..|=||+.|..
T Consensus 192 ~~I~~~--------~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 192 KRIAEV--------SPVPLVIHGGSGI-PPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred HHHHhh--------CCCCEEEeCCCCC-CHHHHHHHHHcCCcEEEECHHHHH
Confidence 777654 2455554 4555 448899999999999999998854
No 190
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.47 E-value=0.00058 Score=66.02 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred cCCHHHHHHHhccCCCcEEeeccccCc--ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 295 VHDEREMDRVLGIEGIELIGINNRNLE--TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 295 Vht~eEl~rAl~l~Ga~iIGINnRdL~--tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
..++.|+.+.+.-.|++-|-+.+.+-. ....+++...++.+. .++++.+.|||.+.+|++++..+|+++|
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~--------~~~pv~~~GGi~s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET--------VFIPLTVGGGIKSIEDVDKLLRAGADKV 100 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh--------cCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 346666655554447776666544432 345567777777664 3578999999999999999999999999
Q ss_pred EEcccccCCCChHHHHHhhhc
Q 015899 373 LVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 373 LVGeaLmk~~dp~~~i~~L~~ 393 (398)
+||+++++.++..+.+.+.++
T Consensus 101 ivgt~~~~~p~~~~~~~~~~~ 121 (254)
T TIGR00735 101 SINTAAVKNPELIYELADRFG 121 (254)
T ss_pred EEChhHhhChHHHHHHHHHcC
Confidence 999999998887777776665
No 191
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.46 E-value=0.0041 Score=62.44 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=95.4
Q ss_pred CCcEEeccccCCHHHHHHH----HHcCcCEEEEeccC--------------C-ChHHHHHHHHHHHH-c--CCcEEEEcC
Q 015899 239 KCPLLCKEFIVDAWQIYYA----RTKGADAVLLIAAV--------------L-PDLDIRYMTKICKL-L--GLTALVEVH 296 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA----r~~GADaVLLiaai--------------L-~~~~L~~Li~~a~~-L--GL~~LVEVh 296 (398)
..|+...=|.-+|.++.+| ...|+|.|=|.... + .++.+.++++..++ . ++.+.|-++
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 4566666666666655543 35677777776554 2 23346666666554 3 355555432
Q ss_pred ----C---HHHHHHHhccCCCcEEeeccccCcc-cc---cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHH
Q 015899 297 ----D---EREMDRVLGIEGIELIGINNRNLET-FE---VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ 365 (398)
Q Consensus 297 ----t---~eEl~rAl~l~Ga~iIGINnRdL~t-f~---vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~ 365 (398)
+ ..++-+.++-.|++.|-|-.|.... ++ .|++...++.+. .+++||+-|||.|++|+.++.
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~--------~~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR--------LTIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh--------cCCcEEEeCCcCCHHHHHHHH
Confidence 1 2233343433489999997775433 11 367666666554 358999999999999999987
Q ss_pred -HcCCCEEEEcccccCCCChHHHHHh
Q 015899 366 -EAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 366 -~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
..|||+|.||.+++..|+....++.
T Consensus 214 ~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 214 AITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred hccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 5799999999999999988776653
No 192
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.45 E-value=0.0012 Score=65.39 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=63.1
Q ss_pred CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc
Q 015899 288 GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 367 (398)
Q Consensus 288 GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 367 (398)
++-+-|||||.+|+..|+++ |+|+|..-|- .++...++++.+ +..+++++.||| |++.+..+.+.
T Consensus 189 ~~~I~VEv~tleea~eA~~~-gaD~I~LD~~-------~~e~l~~~v~~~------~~~i~leAsGGI-t~~ni~~~a~t 253 (277)
T PRK05742 189 GKPVEVEVESLDELRQALAA-GADIVMLDEL-------SLDDMREAVRLT------AGRAKLEASGGI-NESTLRVIAET 253 (277)
T ss_pred CCeEEEEeCCHHHHHHHHHc-CCCEEEECCC-------CHHHHHHHHHHh------CCCCcEEEECCC-CHHHHHHHHHc
Confidence 57789999999999999997 9999977532 344555555532 236789999999 89999999999
Q ss_pred CCCEEEEcccccCC
Q 015899 368 GVKAVLVGESIVKQ 381 (398)
Q Consensus 368 GadaVLVGeaLmk~ 381 (398)
|+|++-+|.-....
T Consensus 254 GvD~Isvg~lt~s~ 267 (277)
T PRK05742 254 GVDYISIGAMTKDV 267 (277)
T ss_pred CCCEEEEChhhcCC
Confidence 99999999755443
No 193
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=97.45 E-value=0.0028 Score=60.23 Aligned_cols=149 Identities=18% Similarity=0.266 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCCcEEeccc----------cCCHHHHHHHHHcCcCEEEEeccCC--ChHHHHHHHHHHHHcCCcEEEE
Q 015899 227 FENLEAVRSAGVKCPLLCKEF----------IVDAWQIYYARTKGADAVLLIAAVL--PDLDIRYMTKICKLLGLTALVE 294 (398)
Q Consensus 227 ~edL~~Ir~a~v~lPVL~KDF----------Iid~~QI~eAr~~GADaVLLiaaiL--~~~~L~~Li~~a~~LGL~~LVE 294 (398)
+-+|..+++. +.++|-..+. =+.+. ..+++|++.|+++.+=. ...++..-++.|.+.||.++++
T Consensus 41 ~~~L~~~~~~-~~i~vgAQn~~~~~~Ga~TGevS~~---mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvC 116 (205)
T TIGR00419 41 FVDLPMIKRE-VEIPVYAQHVDAVLSGAHTGEISAE---MLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVC 116 (205)
T ss_pred HHHHHHHHHh-cCceEEecccccccCCCccCcCCHH---HHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEE
Confidence 3466666654 4555554441 03333 45667999999999843 3344788888899999999999
Q ss_pred cCCHHHHHHHhccCCCcEEeeccccC--cccccChhhHHHHhhhhcc-cccccCCceEEEecCCCCHHHHHHHHHcCCCE
Q 015899 295 VHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLLEGERG-EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKA 371 (398)
Q Consensus 295 Vht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~-~~i~~~~v~vVAESGI~t~eD~~~l~~~Gada 371 (398)
|.+..+-.....+ ...+|..-..-. +.-....+...++...++- ..+ ..++.++..|+|+..++...+...|+||
T Consensus 117 i~~v~~q~~~~~~-~~~vIAYEPvWAIGtG~~as~~~~~~v~~~ir~~~~~-~~~~~IlYGGSV~~~N~~~l~~~~~iDG 194 (205)
T TIGR00419 117 TNNVLTTAAAAAL-EPDVVAVEPPELIGTGIPVSPAQPEVVHGSVRAVKEV-NESVRVLCGAGISTGEDAELAAQLGAEG 194 (205)
T ss_pred EHHHHHHHHhhhh-cCeEEEECCHHHhCCCCCCCHHHHHHHHHHHHhhhhh-cCCceEEEeCCCCHHHHHHHhcCCCCCE
Confidence 9554443332222 222332210000 1111233333333333221 111 2357899999998888888899999999
Q ss_pred EEEcccccCC
Q 015899 372 VLVGESIVKQ 381 (398)
Q Consensus 372 VLVGeaLmk~ 381 (398)
+|||.+-++.
T Consensus 195 ~LvG~Asl~a 204 (205)
T TIGR00419 195 VLLASGSLKA 204 (205)
T ss_pred EEEeeeeecC
Confidence 9999998865
No 194
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.42 E-value=0.0021 Score=63.30 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCC------------CCHHH-----HHHHHhcCCCCcEEeccccCCHH-----HHHHH
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFK------------GSFEN-----LEAVRSAGVKCPLLCKEFIVDAW-----QIYYA 257 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~------------Gs~ed-----L~~Ir~a~v~lPVL~KDFIid~~-----QI~eA 257 (398)
.-.|+..+++||+-|-++.--.|-. |+-.+ -+.|-...-+.||++.=...||+ =+.+.
T Consensus 25 GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~l 104 (268)
T PF09370_consen 25 GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDEL 104 (268)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHH
T ss_pred chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHH
Confidence 3679999999999998875433321 11111 12222222368999776666665 36677
Q ss_pred HHcCcCEEEEeccC--CC-------------hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc
Q 015899 258 RTKGADAVLLIAAV--LP-------------DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET 322 (398)
Q Consensus 258 r~~GADaVLLiaai--L~-------------~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t 322 (398)
+..|-.+|.=--++ ++ -+.=-+|++.|+++||-.+.=|.|++|+++..++ |+|+|-++ -.+++
T Consensus 105 k~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~A-GaDiiv~H-~GlT~ 182 (268)
T PF09370_consen 105 KELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEA-GADIIVAH-MGLTT 182 (268)
T ss_dssp HHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHH-T-SEEEEE--SS--
T ss_pred HHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHc-CCCEEEec-CCccC
Confidence 89999998765442 22 1222368899999999999999999999999997 99999775 22222
Q ss_pred c-------ccChhhHHHHhhhhcc--cccccCCceEEEecCCCCHHHHHHHHHc--CCCEEEEcccccCC
Q 015899 323 F-------EVDNSNTKKLLEGERG--EIIRQKNIIVVGESGLFTPDDIAYVQEA--GVKAVLVGESIVKQ 381 (398)
Q Consensus 323 f-------~vDl~~t~~L~~~i~~--~~i~~~~v~vVAESGI~t~eD~~~l~~~--GadaVLVGeaLmk~ 381 (398)
- ..+++.+.+++..+.. ..+.|+-++++-.|-|.+|+|+.++.+. |++|++-|+++=|-
T Consensus 183 gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ERl 252 (268)
T PF09370_consen 183 GGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSMERL 252 (268)
T ss_dssp --------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTTTHH
T ss_pred CCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccchhhc
Confidence 1 2244444444333211 1233433444555559999999999865 68999999887653
No 195
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.41 E-value=0.0044 Score=58.10 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCc-EEe--ccccCC--H-----HHHHHHHHcCcCEEE
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLC--KEFIVD--A-----WQIYYARTKGADAVL 266 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lP-VL~--KDFIid--~-----~QI~eAr~~GADaVL 266 (398)
.++.++.+...++|++++.| .+..++.+++...+.+ +++ -+|-.- + .++.+|...|||.|-
T Consensus 17 ~~i~~~~~~a~~~~~~av~v---------~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevd 87 (203)
T cd00959 17 EDIRKLCDEAKEYGFAAVCV---------NPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEID 87 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEE---------cHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 35556777777789999988 4666776665311223 232 223211 1 368899999999998
Q ss_pred EeccCC---Ch------HHHHHHHHHHHHcCCcEEEEcC--CHHHHHHH----hccCCCcEEeeccccCcccccChhhHH
Q 015899 267 LIAAVL---PD------LDIRYMTKICKLLGLTALVEVH--DEREMDRV----LGIEGIELIGINNRNLETFEVDNSNTK 331 (398)
Q Consensus 267 LiaaiL---~~------~~L~~Li~~a~~LGL~~LVEVh--t~eEl~rA----l~l~Ga~iIGINnRdL~tf~vDl~~t~ 331 (398)
+..-+- ++ +++.++.+.|+..-+-+++|.. +.+++.++ .++ |+++|=+. ..+..-...++...
T Consensus 88 vv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~-GaD~IKTs-TG~~~~~at~~~v~ 165 (203)
T cd00959 88 MVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA-GADFIKTS-TGFGPGGATVEDVK 165 (203)
T ss_pred EeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh-CCCEEEcC-CCCCCCCCCHHHHH
Confidence 865532 32 2244444444322233466775 44565544 455 99998776 22322233444444
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
.+.+.+ ...+.+.+.|||+|.+++..+..+|++-+
T Consensus 166 ~~~~~~------~~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 166 LMKEAV------GGRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred HHHHHh------CCCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 444432 23578999999999999999999998753
No 196
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.40 E-value=0.00077 Score=64.29 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=65.6
Q ss_pred CHHHHHHHhccCCCcEEeeccccC--cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 297 DEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
+..|+-+.+.-.|++-|-+.+++. +.-..|++...++.+. .++++++.|||.+.+|++++.+.|+++|.+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~--------~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE--------VFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh--------CCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 555555555434787555554443 2335567777777664 257899999999999999999999999999
Q ss_pred cccccCCCChHHHHHhhhc
Q 015899 375 GESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 375 GeaLmk~~dp~~~i~~L~~ 393 (398)
|+++++.++....+.+.++
T Consensus 100 g~~~~~~p~~~~~i~~~~~ 118 (243)
T cd04731 100 NSAAVENPELIREIAKRFG 118 (243)
T ss_pred CchhhhChHHHHHHHHHcC
Confidence 9999998887666665554
No 197
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.0042 Score=63.35 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=101.2
Q ss_pred CCCcEEeccccCCHHHHHHHHH---cCcCEEEEeccC--------------C-ChHHHHHHHHHHH-HcCCcEEEE----
Q 015899 238 VKCPLLCKEFIVDAWQIYYART---KGADAVLLIAAV--------------L-PDLDIRYMTKICK-LLGLTALVE---- 294 (398)
Q Consensus 238 v~lPVL~KDFIid~~QI~eAr~---~GADaVLLiaai--------------L-~~~~L~~Li~~a~-~LGL~~LVE---- 294 (398)
-+-|++..=..-|+..+.+|.. -=+|+|-|..-. + .++-+.++++..+ .++..+=+-
T Consensus 72 ~D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 72 EDRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred CCCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 3778876655567877666641 123777776432 2 4556889998776 467765333
Q ss_pred --cC-CHHHHHHHhccCCCcEEeeccc-----cCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH
Q 015899 295 --VH-DEREMDRVLGIEGIELIGINNR-----NLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366 (398)
Q Consensus 295 --Vh-t~eEl~rAl~l~Ga~iIGINnR-----dL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 366 (398)
.| |.+.+.....+ |++++-|-.| .+.+.-.|.+....+.+.+ + ++++++-|||.+++|+.++++
T Consensus 152 ~d~~kTvd~ak~~e~a-G~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~------~-~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDA-GVSLLTVHGRTREQKGLKTGPADWEAIKAVRENV------P-DIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred CcHHHHHHHHHHHHhC-CCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhC------c-CCcEEeeCCcCcHHHHHHHHH
Confidence 33 55666666665 9999999855 3346778999888887763 2 389999999999999999998
Q ss_pred -cCCCEEEEcccccCCCCh
Q 015899 367 -AGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 367 -~GadaVLVGeaLmk~~dp 384 (398)
-|+|||++|++++..+-.
T Consensus 224 ~tG~dGVM~arglL~NPa~ 242 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNPAL 242 (358)
T ss_pred HhCCceEEecchhhcCchh
Confidence 899999999999987654
No 198
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.35 E-value=0.0018 Score=65.66 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeecccc--Cc-ccccChhhHHHHhhhhcccccccCC-ceEEEec
Q 015899 278 RYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN--LE-TFEVDNSNTKKLLEGERGEIIRQKN-IIVVGES 353 (398)
Q Consensus 278 ~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRd--L~-tf~vDl~~t~~L~~~i~~~~i~~~~-v~vVAES 353 (398)
..+++..++.|.-++.-|-+..++.++.++ |++.|=...-+ -+ ......-.+..|++.+... -+ ++||+.|
T Consensus 117 ~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~-G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~----~~~iPViAAG 191 (336)
T COG2070 117 AEFVARLKAAGIKVIHSVITVREALKAERA-GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDA----VDGIPVIAAG 191 (336)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHhC-CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHH----hcCCCEEEec
Confidence 567778888999999999999999999998 99877443211 01 1101112245566654321 24 8999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 392 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 392 (398)
||.+..++..+..+||++|.+|+.+.-... .....++.+
T Consensus 192 GI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l 232 (336)
T COG2070 192 GIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQAL 232 (336)
T ss_pred CccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHH
Confidence 999999999999999999999999986543 335555554
No 199
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.33 E-value=0.0029 Score=66.31 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec-------
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA------- 269 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia------- 269 (398)
.+-.+.+++..++|+..|.|-+-.+.-.+-.+.++.+|+...++||++++ +.++.+...+..+|||+|-+..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~-v~t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGN-VATAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEe-CCCHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 35567788999999999999664433345667788888753589999966 5899999999999999996541
Q ss_pred -cCC-----Ch-HHHHHHHHHHHHcCCcEEE--EcCCHHHHHHHhccCCCcEEeeccc
Q 015899 270 -AVL-----PD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (398)
Q Consensus 270 -aiL-----~~-~~L~~Li~~a~~LGL~~LV--EVht~eEl~rAl~l~Ga~iIGINnR 318 (398)
..+ +. ..+.+..+.++..|+.++. -+++..|+.+|+.+ ||+.+.+...
T Consensus 302 t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~-GA~~V~~G~~ 358 (450)
T TIGR01302 302 TRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAA-GADAVMLGSL 358 (450)
T ss_pred cceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 111 11 2245566667788999999 68999999999998 9999988743
No 200
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=97.33 E-value=0.0015 Score=66.20 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHcC--CcEEEEec-cCCc----CCCCHHHH----HHHHhcCCC-------CcEEec---cccC-CHHH
Q 015899 196 DFDPVEIARSYEKGG--AACLSILT-DEKY----FKGSFENL----EAVRSAGVK-------CPLLCK---EFIV-DAWQ 253 (398)
Q Consensus 196 ~~dp~~iA~aY~~~G--A~aISVLT-d~~~----F~Gs~edL----~~Ir~a~v~-------lPVL~K---DFIi-d~~Q 253 (398)
+..+.++++..++.+ |++|-++. -|+. +....+.+ +.||+. ++ +||+.| ++-. +.-.
T Consensus 150 ~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~-~~~~~~~~~~Pv~vKLsP~~~~~~i~~ 228 (335)
T TIGR01036 150 EDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQE-QDGLRRVHRVPVLVKIAPDLTESDLED 228 (335)
T ss_pred ccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH-HHhhhhccCCceEEEeCCCCCHHHHHH
Confidence 345677777777766 99988853 2221 12233444 344554 44 999876 3311 1233
Q ss_pred HHH-HHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHH
Q 015899 254 IYY-ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKK 332 (398)
Q Consensus 254 I~e-Ar~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~ 332 (398)
+.+ +..+|||+|.++-++.+. +. + .+. .. +...=|.....++.. -+....+
T Consensus 229 ia~~~~~~GadGi~l~NT~~~~---------------~~-~--~~~-------~~-~~~~GGlSG~~i~p~--al~~v~~ 280 (335)
T TIGR01036 229 IADSLVELGIDGVIATNTTVSR---------------SL-V--QGP-------KN-SDETGGLSGKPLQDK--STEIIRR 280 (335)
T ss_pred HHHHHHHhCCcEEEEECCCCcc---------------cc-c--cCc-------cc-cCCCCcccCHHHHHH--HHHHHHH
Confidence 433 577899999998887531 11 0 000 00 000112222221111 1222333
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC-CCChHHHHH
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-QDDPGKGIT 389 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~~dp~~~i~ 389 (398)
+.+. + +.++++|+.|||.|++|+.++..+||++|=||++++. .++....+.
T Consensus 281 ~~~~-----~-~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 281 LYAE-----L-QGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred HHHH-----h-CCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHH
Confidence 3332 1 3358999999999999999999999999999999976 477665554
No 201
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.012 Score=59.52 Aligned_cols=143 Identities=20% Similarity=0.172 Sum_probs=102.8
Q ss_pred CCcEEeccccCCHHHHHHHH----HcCcCEEEEecc--------------CC-ChHHHHHHHHHHHH-cC-CcEEE----
Q 015899 239 KCPLLCKEFIVDAWQIYYAR----TKGADAVLLIAA--------------VL-PDLDIRYMTKICKL-LG-LTALV---- 293 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr----~~GADaVLLiaa--------------iL-~~~~L~~Li~~a~~-LG-L~~LV---- 293 (398)
.-|+...=+.-||..+.+|. ..|+|.|=|.+- +| +++.+.++++..++ .+ +.+=|
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 45655555556776666553 567888877654 23 45568888887775 44 55533
Q ss_pred ---EcC-CHHHHHHHhccCCCcEEeeccccCcc---cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH
Q 015899 294 ---EVH-DEREMDRVLGIEGIELIGINNRNLET---FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366 (398)
Q Consensus 294 ---EVh-t~eEl~rAl~l~Ga~iIGINnRdL~t---f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~ 366 (398)
+-| +..|+.+++.-.|++.+.|-.|.-.. ...|.+...++.+.+ .++++|+-|+|+|++|++++++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~-------~~ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAV-------PSIPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhC-------CCCeEEeCCCcCCHHHHHHHHH
Confidence 343 45566666665689999998775433 346788877777652 2389999999999999999998
Q ss_pred c-CCCEEEEcccccCCCChHHHH
Q 015899 367 A-GVKAVLVGESIVKQDDPGKGI 388 (398)
Q Consensus 367 ~-GadaVLVGeaLmk~~dp~~~i 388 (398)
. |+|||.||.+.+..+.....+
T Consensus 219 ~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 219 YTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred hhCCCEEEEcHHHccCCcHHHHH
Confidence 5 799999999999999987776
No 202
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.30 E-value=0.006 Score=61.73 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHcC--cCEEEEeccCCChHHHHHHHHHHHH-c-CCcEEEE-cCCHHHHHHHhccCCCcEEeec--------ccc
Q 015899 253 QIYYARTKG--ADAVLLIAAVLPDLDIRYMTKICKL-L-GLTALVE-VHDEREMDRVLGIEGIELIGIN--------NRN 319 (398)
Q Consensus 253 QI~eAr~~G--ADaVLLiaaiL~~~~L~~Li~~a~~-L-GL~~LVE-Vht~eEl~rAl~l~Ga~iIGIN--------nRd 319 (398)
.+.+..++| +|+|.++.+-=.....-++++..++ . +..+++- |-+.+.+..+.++ |++.|=+. .|.
T Consensus 98 r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a-Gad~I~V~~G~G~~~~tr~ 176 (321)
T TIGR01306 98 FVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA-GADATKVGIGPGKVCITKI 176 (321)
T ss_pred HHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc-CcCEEEECCCCCcccccee
Confidence 355556778 8999998875443445555555554 3 5557776 8999999999997 99977443 222
Q ss_pred Cccccc-C--hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 320 LETFEV-D--NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 320 L~tf~v-D--l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
..-... + +....+..+. .++++|+-|||.+..|+.++..+|||+|.+|..|-...
T Consensus 177 ~~g~g~~~~~l~ai~ev~~a--------~~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~ 234 (321)
T TIGR01306 177 KTGFGTGGWQLAALRWCAKA--------ARKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE 234 (321)
T ss_pred eeccCCCchHHHHHHHHHHh--------cCCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence 111111 1 2122222222 25789999999999999999999999999998886543
No 203
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.014 Score=56.81 Aligned_cols=176 Identities=23% Similarity=0.277 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCC--cCCCCHHHHHHHHhcCCCCcEE-----eccccCCHHHHH---HHHH-cCcCE
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEK--YFKGSFENLEAVRSAGVKCPLL-----CKEFIVDAWQIY---YART-KGADA 264 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~--~F~Gs~edL~~Ir~a~v~lPVL-----~KDFIid~~QI~---eAr~-~GADa 264 (398)
.-++..++++....|+.-+-|---.. .-.|....|..++. .++++| |+. -+.-|. .||+ .|-|-
T Consensus 26 y~s~~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~--~~~~~LPNTaGc~t---aeEAv~tArlARE~~~t~w 100 (262)
T COG2022 26 YPSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIP--LGVTLLPNTAGCRT---AEEAVRTARLAREALGTNW 100 (262)
T ss_pred CCCHHHHHHHHHhcCCceEEEEEEeecccCCCcchHHHHhhh--cCcEeCCCccccCC---HHHHHHHHHHHHHHccCCe
Confidence 45788999999999998776642211 22345555666665 366777 322 112232 2344 35666
Q ss_pred EEEec----cCCChHHHHHHHHHHHHc---CCcEEEEcC-CHHHHHHHhccCCCcE-------EeeccccCcccccChhh
Q 015899 265 VLLIA----AVLPDLDIRYMTKICKLL---GLTALVEVH-DEREMDRVLGIEGIEL-------IGINNRNLETFEVDNSN 329 (398)
Q Consensus 265 VLLia----aiL~~~~L~~Li~~a~~L---GL~~LVEVh-t~eEl~rAl~l~Ga~i-------IGINnRdL~tf~vDl~~ 329 (398)
|=|=+ ..|-+ |--++++.|+.| |..+|.=++ |+--.++..+. |+.. ||.| +.+.+ ...
T Consensus 101 iKlEVi~d~~tLlP-D~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~-GcaavMPl~aPIGSg-~G~~n----~~~ 173 (262)
T COG2022 101 IKLEVIGDEKTLLP-DPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEA-GCAAVMPLGAPIGSG-LGLQN----PYN 173 (262)
T ss_pred EEEEEecCCcccCC-ChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhc-CceEeccccccccCC-cCcCC----HHH
Confidence 65522 12222 345677777754 999998887 55555665665 7653 4544 22221 122
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
..-++.. .++++|.-.||.+|.|+...+++||||||+-+++-+..||..-.+.+
T Consensus 174 l~iiie~--------a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af 227 (262)
T COG2022 174 LEIIIEE--------ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAF 227 (262)
T ss_pred HHHHHHh--------CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHH
Confidence 2233332 47899999999999999999999999999999999999998766554
No 204
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.27 E-value=0.025 Score=54.20 Aligned_cols=174 Identities=15% Similarity=0.165 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHcCCcEEEEe-ccCCcCCCCHHHHHHHHhcCCCCcEE--e--ccccCCHHH-HHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAGVKCPLL--C--KEFIVDAWQ-IYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-Td~~~F~Gs~edL~~Ir~a~v~lPVL--~--KDFIid~~Q-I~eAr~~GADaVLLiaai 271 (398)
+..+..+..++.|...+++= -++.|...+++.++.+++. +.+++ . -|..-+++. +..+..+|||.|.+-+ .
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~-~ 89 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHA-S 89 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcc-c
Confidence 45556666667665544432 2344555678889999875 34554 2 345556655 5567789999998865 3
Q ss_pred CChHHHHHHHHHHHHc--CCcEEEEc---CCHHHHHH-----------------HhccCCCcEEeeccccCcccccChhh
Q 015899 272 LPDLDIRYMTKICKLL--GLTALVEV---HDEREMDR-----------------VLGIEGIELIGINNRNLETFEVDNSN 329 (398)
Q Consensus 272 L~~~~L~~Li~~a~~L--GL~~LVEV---ht~eEl~r-----------------Al~l~Ga~iIGINnRdL~tf~vDl~~ 329 (398)
-+.+.++.+.+.++.. +....|.+ .+.+++.. +.++ |++.+-.. ...
T Consensus 90 ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~-g~dgvv~~----------~~~ 158 (230)
T PRK00230 90 GGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEA-GLDGVVCS----------AQE 158 (230)
T ss_pred CCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCeEEEeC----------hHH
Confidence 3455688888876643 34444442 23344431 0111 22222111 111
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHH-----------HHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPD-----------DIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~e-----------D~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
...+.+. + +.+.. ..-.||. ++ .+..+.+.|+++++||.+|++++||.++++++..
T Consensus 159 ~~~ir~~-----~-~~~~~-~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~ 225 (230)
T PRK00230 159 AAAIREA-----T-GPDFL-LVTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILA 225 (230)
T ss_pred HHHHHhh-----c-CCceE-EEcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 1222221 1 22333 3446785 43 4677778999999999999999999999998864
No 205
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.26 E-value=0.0038 Score=66.39 Aligned_cols=119 Identities=13% Similarity=0.199 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec--------
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-------- 269 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia-------- 269 (398)
+-.+.+.+..++|++.|.|-+-.+.-....+.++.+|+...++||..++ +.++.+...+..+|||+|.+..
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~-V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t 319 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGN-VVTADQAKNLIDAGADGLRIGMGSGSICIT 319 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECC-cCCHHHHHHHHHcCCCEEEECCcCCccccc
Confidence 4478899999999999999664332223457888898763478999975 5889999999999999997631
Q ss_pred cC-----CCh-HHHHHHHHHHHHcCCcEEE--EcCCHHHHHHHhccCCCcEEeeccc
Q 015899 270 AV-----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNR 318 (398)
Q Consensus 270 ai-----L~~-~~L~~Li~~a~~LGL~~LV--EVht~eEl~rAl~l~Ga~iIGINnR 318 (398)
.. .+. ..+.++.+.++..|+.++. -+++..|+-+|+.+ ||+.+.+.+.
T Consensus 320 ~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~-GA~~Vm~G~~ 375 (495)
T PTZ00314 320 QEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALAL-GADCVMLGSL 375 (495)
T ss_pred chhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHc-CCCEEEECch
Confidence 11 111 2355666777889999999 78999999999998 9998888754
No 206
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.25 E-value=0.0054 Score=64.91 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=90.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec--
Q 015899 192 ILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-- 269 (398)
Q Consensus 192 ~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia-- 269 (398)
.+..+.+..+.++++.++|++.|-|-+..+.-.+-.+.++.+|+...++||+.++ +.+..+...+..+|||+|-...
T Consensus 222 ai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~-v~t~e~a~~l~~aGad~i~vg~g~ 300 (486)
T PRK05567 222 AVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN-VATAEAARALIEAGADAVKVGIGP 300 (486)
T ss_pred ecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEec-cCCHHHHHHHHHcCCCEEEECCCC
Confidence 3444446689999999999998854333344456677888888763389999966 5888999999999999997631
Q ss_pred ------cCC---ChHH---HHHHHHHHHHcCCcEEE--EcCCHHHHHHHhccCCCcEEeec
Q 015899 270 ------AVL---PDLD---IRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 270 ------aiL---~~~~---L~~Li~~a~~LGL~~LV--EVht~eEl~rAl~l~Ga~iIGIN 316 (398)
+.+ ...+ +.+..+.++..|+.++. -+++..|+.+|+.+ ||+.+.+.
T Consensus 301 gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~-GA~~v~~G 360 (486)
T PRK05567 301 GSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA-GASAVMLG 360 (486)
T ss_pred CccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh-CCCEEEEC
Confidence 111 1123 44445555567999999 78999999999998 99988776
No 207
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.24 E-value=0.015 Score=57.10 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=124.7
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-----ccCCcCCC----CHHHHHHHHhcCCCCcEEec
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-----Td~~~F~G----s~edL~~Ir~a~v~lPVL~K 245 (398)
+++.+||+ | +.+.......++|+...+.|+...... |-+.-|+| .+..|+.+++. ..+|++.-
T Consensus 24 ~~~~~IAG-----p--c~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~-~Gl~~~t~ 95 (260)
T TIGR01361 24 GSPIVIAG-----P--CSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE-HGLPVVTE 95 (260)
T ss_pred CcEEEEEe-----C--CccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-hCCCEEEe
Confidence 45778999 4 455555556677888877777644421 33344665 45556666665 78999975
Q ss_pred cccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeecccc
Q 015899 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRN 319 (398)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnRd 319 (398)
= .|+.++..+... +|.+-+.+..+.+. .|++.+.+.|..+++... +.+|++.|++. .|..-|.+-.|.
T Consensus 96 ~--~d~~~~~~l~~~-~d~lkI~s~~~~n~---~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG 169 (260)
T TIGR01361 96 V--MDPRDVEIVAEY-ADILQIGARNMQNF---ELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERG 169 (260)
T ss_pred e--CChhhHHHHHhh-CCEEEECcccccCH---HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4 588999999888 99877777766663 366777788999999986 89998888754 355434444443
Q ss_pred Cc------ccccChhhHHHHhhhhcccccccCCceEEE-ecCCCC-----HHHHHHHHHcCCCEEEEcccccCC
Q 015899 320 LE------TFEVDNSNTKKLLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 320 L~------tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.. ...+|+.....|... .+++|+. .+-... +.-......+||+|++|-..+.-.
T Consensus 170 ~s~y~~~~~~~~dl~~i~~lk~~--------~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 170 IRTFEKATRNTLDLSAVPVLKKE--------THLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred CCCCCCCCcCCcCHHHHHHHHHh--------hCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 33 346788776666543 2467777 444334 566667788999999988766543
No 208
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.22 E-value=0.00074 Score=62.27 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=78.3
Q ss_pred CHHHHHHHHHcCcC--------EEEEeccCCC-hHHHHHHHHHHHHc--CCc-EEEEcCCHHHHHHHhccCCCcEEeecc
Q 015899 250 DAWQIYYARTKGAD--------AVLLIAAVLP-DLDIRYMTKICKLL--GLT-ALVEVHDEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 250 d~~QI~eAr~~GAD--------aVLLiaaiL~-~~~L~~Li~~a~~L--GL~-~LVEVht~eEl~rAl~l~Ga~iIGINn 317 (398)
-+.+.|.++.-|++ .|++-..-+. -..+.+.++.+++. ... +.|||+|.+|++.|+++ |+++|-.-|
T Consensus 30 r~l~~~Av~~GGg~~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~-g~d~I~lD~ 108 (169)
T PF01729_consen 30 RPLEKYAVLAGGGDNHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA-GADIIMLDN 108 (169)
T ss_dssp HHHHHHHHHHTTSBHHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT-T-SEEEEES
T ss_pred CHHHHHHHHhcCceeEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh-CCCEEEecC
Confidence 34566666666665 3333221110 01256666666652 343 89999999999999997 999998876
Q ss_pred ccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 318 RNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 318 RdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
-+. +...++++.++. . +..+.+.+.||| |++.+..+.+.|+|.+.+|......+
T Consensus 109 ~~~-------~~~~~~v~~l~~--~-~~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 109 MSP-------EDLKEAVEELRE--L-NPRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp -CH-------HHHHHHHHHHHH--H-TTTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred cCH-------HHHHHHHHHHhh--c-CCcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 433 444454443211 1 245788889999 99999999999999999998765543
No 209
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.21 E-value=0.00075 Score=63.06 Aligned_cols=119 Identities=24% Similarity=0.240 Sum_probs=82.4
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEec----cCCcCCC-----CHHHHHHHHhcCCCCcEEecccc
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT----DEKYFKG-----SFENLEAVRSAGVKCPLLCKEFI 248 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLT----d~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFI 248 (398)
+||.+|- -.++|+..+++||.++.+|- |-..-+| ++..++.|..+ |++||+.|--|
T Consensus 16 GVIMDV~--------------n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~a-VsIPVMAK~RI 80 (208)
T PF01680_consen 16 GVIMDVT--------------NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDA-VSIPVMAKVRI 80 (208)
T ss_dssp EEEEEES--------------SHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH--SSEEEEEEET
T ss_pred CeEEEec--------------CHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHh-eEeceeecccc
Confidence 6888772 24899999999999999984 3333344 78889999987 99999998876
Q ss_pred CC--HHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeec
Q 015899 249 VD--AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 249 id--~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGIN 316 (398)
=+ +.||.|| .|.|.|-- ..+|++.|-.+.++. +......++-+.|+-|+.|-.. +||.+|-+.
T Consensus 81 GHfvEAqiLea--lgVD~IDE-SEVLTpAD~~~HI~K-~~F~vPFVcGarnLGEALRRI~-EGAaMIRtK 145 (208)
T PF01680_consen 81 GHFVEAQILEA--LGVDYIDE-SEVLTPADEENHIDK-HNFKVPFVCGARNLGEALRRIA-EGAAMIRTK 145 (208)
T ss_dssp T-HHHHHHHHH--TT-SEEEE-ETTS--S-SS----G-GG-SS-EEEEESSHHHHHHHHH-TT-SEEEEE
T ss_pred ceeehhhhHHH--hCCceecc-ccccccccccccccc-hhCCCCeEecCCCHHHHHhhHH-hhhhhhccc
Confidence 44 4588887 89999876 578888765555553 5688888999999999999998 599999765
No 210
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.21 E-value=0.0035 Score=62.23 Aligned_cols=91 Identities=16% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHHHHHHHc--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 279 YMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 279 ~Li~~a~~L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
+.++.++.. ...+-|||.|++|+..|+++ |+++|-..|-+ ++...+..+.++.... +..+.+.+.|||
T Consensus 171 ~av~~~r~~~~~~kIeVEv~~leea~~a~~a-gaDiI~LDn~~-------~e~l~~~v~~l~~~~~-~~~~~leaSGGI- 240 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVESLEDALKAAKA-GADIIMLDNMT-------PEEIREVIEALKREGL-RERVKIEVSGGI- 240 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc-CcCEEEECCCC-------HHHHHHHHHHHHhcCc-CCCEEEEEECCC-
Confidence 333444443 36789999999999999997 99998887643 3444444443211101 135788899999
Q ss_pred CHHHHHHHHHcCCCEEEEccccc
Q 015899 357 TPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 357 t~eD~~~l~~~GadaVLVGeaLm 379 (398)
|++.+..+.+.|+|.+.+|.-..
T Consensus 241 ~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 241 TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999997544
No 211
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.19 E-value=0.0031 Score=59.93 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=71.8
Q ss_pred CCCCCC-CCCHHHHHHHHHHcCCcEEEEecc--CCcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEE
Q 015899 190 RGILRE-DFDPVEIARSYEKGGAACLSILTD--EKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAV 265 (398)
Q Consensus 190 kG~i~~-~~dp~~iA~aY~~~GA~aISVLTd--~~~F~G-s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaV 265 (398)
+|+... ..++.+.++.+.+.|+..|.+..- .+...| +++.++.+++. +++||+.-..|.++.++.+...+|||+|
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-~~iPvia~GGI~~~~di~~~~~~Ga~gv 219 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDS-VDIPVIASGGVTTLDDLRALKEAGAAGV 219 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 354332 459999999999999999987531 223333 56778888886 8999999999999999999999999999
Q ss_pred EEeccCCChH-HHHHHHHH
Q 015899 266 LLIAAVLPDL-DIRYMTKI 283 (398)
Q Consensus 266 LLiaaiL~~~-~L~~Li~~ 283 (398)
++..+++.+. .+.++..+
T Consensus 220 ~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 220 VVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred EEEHHHhcCCcCHHHHHHH
Confidence 9998887543 36666554
No 212
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.19 E-value=0.0017 Score=61.19 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=65.2
Q ss_pred cCCHHHHHHHhccCCCcEEeeccccC--cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 295 VHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 295 Vht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
..++.++-+.+...|++.+-+...|- ..-..+++...++.+. .++++.+-|||.+.+|++++.++||++|
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~--------~~~pv~~~GGI~~~ed~~~~~~~Ga~~v 100 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA--------VDIPVQVGGGIRSLETVEALLDAGVSRV 100 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH--------CCCCEEEcCCcCCHHHHHHHHHcCCCEE
Confidence 35777766666444777766654332 2333667777777664 3578999999999999999999999999
Q ss_pred EEcccccCCCChHHHHHhhh
Q 015899 373 LVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 373 LVGeaLmk~~dp~~~i~~L~ 392 (398)
++|+++++.++..+.+.+.+
T Consensus 101 ilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 101 IIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred EECchHHhCHHHHHHHHHHh
Confidence 99999999775554444433
No 213
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.17 E-value=0.0042 Score=62.48 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=72.2
Q ss_pred HHHHHHHHHH------cCCcEEEEcCCHHHHHHHhc------cCCCcEEeecccc--CcccccChhhHHHHhhhhccccc
Q 015899 277 IRYMTKICKL------LGLTALVEVHDEREMDRVLG------IEGIELIGINNRN--LETFEVDNSNTKKLLEGERGEII 342 (398)
Q Consensus 277 L~~Li~~a~~------LGL~~LVEVht~eEl~rAl~------l~Ga~iIGINnRd--L~tf~vDl~~t~~L~~~i~~~~i 342 (398)
+.+.++.+++ ....+-|||.|++|+..|++ + |+++|-.-|-+ ......+++...+.++.+
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~a-gaDiImLDnm~~~~~~~~~~~e~l~~av~~~----- 259 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKT-SLTRVMLDNMVVPLENGDVDVSMLKEAVELI----- 259 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccC-CCCEEEeCCCcccccccCCCHHHHHHHHHhh-----
Confidence 4455555554 23668999999999999999 8 99999998873 355556777777766542
Q ss_pred ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 343 RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 343 ~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
....++-+.||| |++.+......|+|.+.+|.--
T Consensus 260 -~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galt 293 (308)
T PLN02716 260 -NGRFETEASGNV-TLDTVHKIGQTGVTYISSGALT 293 (308)
T ss_pred -CCCceEEEECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 234568888899 9999999999999999999643
No 214
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0065 Score=58.04 Aligned_cols=148 Identities=22% Similarity=0.302 Sum_probs=93.0
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCC------HHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcE--EEEcCC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVD------AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTA--LVEVHD 297 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid------~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~--LVEVht 297 (398)
-++.++.+|.+++.+||+--.+--+ +--|..|+.+||.+.++ --|++++-..+-+.|+..|++. |+--++
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfii--vDlPpEEa~~~Rne~~k~gislvpLvaPsT 159 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFII--VDLPPEEAETLRNEARKHGISLVPLVAPST 159 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEe--ccCChHHHHHHHHHHHhcCceEEEeeCCCC
Confidence 3567777887789999976554211 12356789999999665 4588888999999999988776 444455
Q ss_pred HHH-HHHHhccCCCcEEeeccccCccccc-Chhh-HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 298 ERE-MDRVLGIEGIELIGINNRNLETFEV-DNSN-TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 298 ~eE-l~rAl~l~Ga~iIGINnRdL~tf~v-Dl~~-t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.+| ++...++. -.+|=+-.|--.|-.- ..+. ..+|+..++.. -.+.++-..=||+++|..+++.+. +|||+|
T Consensus 160 tdeRmell~~~a-dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~---t~dtPlAVGFGvst~EHf~qVgsv-aDGVvv 234 (268)
T KOG4175|consen 160 TDERMELLVEAA-DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKA---TGDTPLAVGFGVSTPEHFKQVGSV-ADGVVV 234 (268)
T ss_pred hHHHHHHHHHhh-cceEEEEEeccccccHHHHHHHHHHHHHHHHHh---cCCCceeEeeccCCHHHHHhhhhh-ccceEe
Confidence 444 33333321 1233222222212110 1111 12343333221 136677778899999999999999 999999
Q ss_pred cccccC
Q 015899 375 GESIVK 380 (398)
Q Consensus 375 GeaLmk 380 (398)
|+.+++
T Consensus 235 GSkiv~ 240 (268)
T KOG4175|consen 235 GSKIVK 240 (268)
T ss_pred cHHHHH
Confidence 998763
No 215
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=97.16 E-value=0.0023 Score=62.53 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHHHHH--------------Hhc------c--
Q 015899 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDR--------------VLG------I-- 307 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eEl~r--------------Al~------l-- 307 (398)
..+++|++.|+|+++=. +++.+..=++.|.+.||.++++|..-.|-.. ++. +
T Consensus 81 mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~ 160 (250)
T PRK00042 81 MLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQFAN 160 (250)
T ss_pred HHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHhCC
Confidence 35667999999999843 2333444444588999999999975433221 111 1
Q ss_pred -----CCCcEEeeccccCcccccChhhHHHHhhhhccc---cc--ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 308 -----EGIELIGINNRNLETFEVDNSNTKKLLEGERGE---II--RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 308 -----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~---~i--~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 377 (398)
+....||.+ + ..+.+...+....+|.- .+ ...++.++..|+++.-++...+...|+||+|||.+
T Consensus 161 ~vIAYEPvWAIGtG-~-----~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~A 234 (250)
T PRK00042 161 LVIAYEPVWAIGTG-K-----TATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGA 234 (250)
T ss_pred EEEEECCHHHhCCC-C-----CCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeee
Confidence 111234432 1 12333333322222210 00 12357899999998888888888999999999999
Q ss_pred ccCCCChHHHHHh
Q 015899 378 IVKQDDPGKGITG 390 (398)
Q Consensus 378 Lmk~~dp~~~i~~ 390 (398)
-++.+++.+.++.
T Consensus 235 sl~~~~f~~ii~~ 247 (250)
T PRK00042 235 SLKAEDFLAIVKA 247 (250)
T ss_pred eechHHHHHHHHH
Confidence 9999888877754
No 216
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.15 E-value=0.0035 Score=60.08 Aligned_cols=184 Identities=13% Similarity=0.124 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEe--ccccCCHHHHHHHHHcCcCEEEEeccCCChHH
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDLD 276 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~--KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (398)
..++++.... ....+=|-| +-|+.++++-++.+++...+.+|+. |=+=++.+-...+..+|||.+..++.. +.+.
T Consensus 18 A~~l~~~l~~-~v~~iKVG~-~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~-g~~~ 94 (218)
T PRK13305 18 AQRDVTLLKD-HVDIVEAGT-ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAA-PLAT 94 (218)
T ss_pred HHHHHHHccc-cCCEEEECH-HHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCC-CHHH
Confidence 3444544432 345666644 3456667888888887522567763 322245554445678999999988873 5666
Q ss_pred HHHHHHHHHHcCCc---EEEEcCCHHHHHHHhccCCCcEEeec-cccCcc--cccChhhHHHHhhhhcccccccCCceEE
Q 015899 277 IRYMTKICKLLGLT---ALVEVHDEREMDRVLGIEGIELIGIN-NRNLET--FEVDNSNTKKLLEGERGEIIRQKNIIVV 350 (398)
Q Consensus 277 L~~Li~~a~~LGL~---~LVEVht~eEl~rAl~l~Ga~iIGIN-nRdL~t--f~vDl~~t~~L~~~i~~~~i~~~~v~vV 350 (398)
+++..+.+...|-. -|+.|.|..+.....++ |.+.+... .++-.. ..........+.+. .+.+..+.
T Consensus 95 i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~-g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~------~~~~~~i~ 167 (218)
T PRK13305 95 VEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRI-GVRQAIYHRGRDAQASGQQWGEADLARMKAL------SDIGLELS 167 (218)
T ss_pred HHHHHHHHHhcCCcccceEEEecCcchHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH------hCCCCcEE
Confidence 88888866654432 36777544443333344 44322111 000000 01111222222221 12355356
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 351 AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.-+|| .++.....-+.++|-++||.+|++++||.++.+++..
T Consensus 168 VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~ 209 (218)
T PRK13305 168 ITGGI-TPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHA 209 (218)
T ss_pred EeCCc-CccccccccccCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 67999 6777778888899999999999999999999988764
No 217
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.009 Score=60.23 Aligned_cols=159 Identities=26% Similarity=0.299 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHcC-CcEEEEeccCCc------CCCCHHHHH----HHHhcCCCCcEEeccc--cCCHHHHHH-HHHcCc
Q 015899 197 FDPVEIARSYEKGG-AACLSILTDEKY------FKGSFENLE----AVRSAGVKCPLLCKEF--IVDAWQIYY-ARTKGA 262 (398)
Q Consensus 197 ~dp~~iA~aY~~~G-A~aISVLTd~~~------F~Gs~edL~----~Ir~a~v~lPVL~KDF--Iid~~QI~e-Ar~~GA 262 (398)
.+..+++...++.| |++|=++.--.. ++-+++.+. .+++. +++||+.|=- +.|-.++.. +..+||
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl~P~~~di~~iA~~~~~~g~ 187 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TKVPVFVKLAPNITDIDEIAKAAEEAGA 187 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-ccCceEEEeCCCHHHHHHHHHHHHHcCC
Confidence 35677788888888 777777633222 222444444 34554 7899987731 122234443 357788
Q ss_pred CEEEEeccCCChH--HHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhccc
Q 015899 263 DAVLLIAAVLPDL--DIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGE 340 (398)
Q Consensus 263 DaVLLiaaiL~~~--~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~ 340 (398)
|+|.++=+..+.. ++... .-.+. -..-|+..+-++ .+-+....++.+.
T Consensus 188 Dgl~~~NT~~~~~~id~~~~---------------------~~~~~---~~~GGLSG~~ik--p~al~~v~~l~~~---- 237 (310)
T COG0167 188 DGLIAINTTKSGMKIDLETK---------------------KPVLA---NETGGLSGPPLK--PIALRVVAELYKR---- 237 (310)
T ss_pred cEEEEEeecccccccccccc---------------------ccccC---cCCCCcCcccch--HHHHHHHHHHHHh----
Confidence 8888877766431 11110 00000 122233333322 1223334444443
Q ss_pred ccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC-CChHHHH
Q 015899 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ-DDPGKGI 388 (398)
Q Consensus 341 ~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~-~dp~~~i 388 (398)
+ ..++++|.-|||.|.+|+.+...+||++|=||++++.. +...+.|
T Consensus 238 -~-~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I 284 (310)
T COG0167 238 -L-GGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEI 284 (310)
T ss_pred -c-CCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHH
Confidence 1 24699999999999999999999999999999999987 6554433
No 218
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.11 E-value=0.0083 Score=58.17 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHcCcCEEEEeccC-CChHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccC------
Q 015899 249 VDAWQIYYARTKGADAVLLIAAV-LPDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGINNRNL------ 320 (398)
Q Consensus 249 id~~QI~eAr~~GADaVLLiaai-L~~~~L~~Li~~a~-~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL------ 320 (398)
........+..+|.|+|++..+. .+.+.+..+++.++ ..++.+++|..|.+-+-+..+. =+-.-=.|.+|.
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDa-vff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADA-VFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCe-EEEEEEecCCCcccccch
Confidence 34456667789999999998886 67778999999999 8999999999999887664332 000000111111
Q ss_pred -------------------------------------ccc-ccChhhHHHHhhhhcc---------cccc----------
Q 015899 321 -------------------------------------ETF-EVDNSNTKKLLEGERG---------EIIR---------- 343 (398)
Q Consensus 321 -------------------------------------~tf-~vDl~~t~~L~~~i~~---------~~i~---------- 343 (398)
..+ ..|+.....|+...-+ +...
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 000 1122223333332110 0000
Q ss_pred -cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 344 -QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 344 -~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
-....++..|||+++|+++++.++|||.+++|+.+.+.++
T Consensus 188 v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~ 228 (240)
T COG1646 188 VLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPD 228 (240)
T ss_pred hhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHH
Confidence 0124789999999999999999999999999999998873
No 219
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.10 E-value=0.0032 Score=65.13 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEe----ccccCCH-HHHHHH-H------------H
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC----KEFIVDA-WQIYYA-R------------T 259 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~----KDFIid~-~QI~eA-r------------~ 259 (398)
...++.+..+++|+.+|-+-.|-..++-...|++ .. . +|... ..+.-+| |...-. . .
T Consensus 152 ~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r---~~-~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T cd03332 152 LTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLD---LG-Y-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEA 226 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhh---cC-C-CCCccccchhhhhccchhhhccccCCCCCcccccccch
Confidence 3456677788899999999888888876665554 32 2 23211 0111011 000000 0 0
Q ss_pred cCcCEE-EEeccCCChHHHHHHHHHHHHcCCcEEEE-cCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 260 KGADAV-LLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 260 ~GADaV-LLiaaiL~~~~L~~Li~~a~~LGL~~LVE-Vht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
.++... ..+...++-++++.+.+ ..++.+++- |.+.+++.++.++ |++.|-|.|..-......+.+... +..+
T Consensus 227 ~~~~~~~~~~~~~~tW~~i~~lr~---~~~~pvivKgV~~~~dA~~a~~~-G~d~I~vsnhGGr~~d~~~~t~~~-L~ei 301 (383)
T cd03332 227 AVARFVSVFSGPSLTWEDLAFLRE---WTDLPIVLKGILHPDDARRAVEA-GVDGVVVSNHGGRQVDGSIAALDA-LPEI 301 (383)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHH---hcCCCEEEecCCCHHHHHHHHHC-CCCEEEEcCCCCcCCCCCcCHHHH-HHHH
Confidence 000000 00112355566666655 346666655 9999999999997 999887765544333333333222 2222
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
+.. + ...+++++-|||.+..|+.+...+||++|.||..++.
T Consensus 302 ~~~-~-~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~ 342 (383)
T cd03332 302 VEA-V-GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY 342 (383)
T ss_pred HHH-h-cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 211 1 2358999999999999999999999999999999884
No 220
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.08 E-value=0.0095 Score=61.01 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=81.9
Q ss_pred HHHH-HHHHcCcCEEEEeccCCChHHHHHHHHHHHH-cC-CcEEEE-cCCHHHHHHHhccCCCcEE--eec------ccc
Q 015899 252 WQIY-YARTKGADAVLLIAAVLPDLDIRYMTKICKL-LG-LTALVE-VHDEREMDRVLGIEGIELI--GIN------NRN 319 (398)
Q Consensus 252 ~QI~-eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~-LG-L~~LVE-Vht~eEl~rAl~l~Ga~iI--GIN------nRd 319 (398)
++-. +..++|+|.++++.+--..+...++++..++ .+ +.+++- |-|.+-++..+++ |++.| ||. +|.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a-Gad~vkVGiGpGsiCtTr~ 188 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA-GADAVKVGIGPGSICTTRE 188 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT-T-SEEEESSSSSTTBHHHH
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc-CCCEEEEeccCCccccccc
Confidence 4443 4456899999999887655555556665554 44 777664 5688888888886 99855 543 344
Q ss_pred CcccccC-hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 320 LETFEVD-NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 320 L~tf~vD-l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
.+-+.+- +....+.++.. ...++++||-|||.++-|+.+...+|||+|.+|+.|-...
T Consensus 189 v~GvG~PQ~tAv~~~a~~a-----~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 189 VTGVGVPQLTAVYECAEAA-----RDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHSBSCTHHHHHHHHHHHH-----HCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBT
T ss_pred ccccCCcHHHHHHHHHHHh-----hhccCceeecCCcCcccceeeeeeecccceeechhhccCc
Confidence 4444443 22333444331 1247899999999999999999999999999999887654
No 221
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.07 E-value=0.004 Score=61.14 Aligned_cols=87 Identities=25% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcC-CC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYF-KG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F-~G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||+ +|+.+++.|++++.-|--|=-- +| ++.+|+.|++. .++||++.-.|-.+.++++|.+.|||+||+..++.
T Consensus 145 ~~D~v-~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 145 NADPM-LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CCCHH-HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 44665 8999999999999998655322 11 67899999986 89999999999999999999999999999998887
Q ss_pred C---hHHHHHHHHHH
Q 015899 273 P---DLDIRYMTKIC 284 (398)
Q Consensus 273 ~---~~~L~~Li~~a 284 (398)
. +.++...++.|
T Consensus 223 kA~dP~~mA~a~~~A 237 (267)
T CHL00162 223 QAKNPEQMAKAMKLA 237 (267)
T ss_pred cCCCHHHHHHHHHHH
Confidence 3 33344444444
No 222
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.07 E-value=0.0087 Score=63.50 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=91.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEE--------Ee
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVL--------LI 268 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVL--------Li 268 (398)
.+..+.++.+.+.|++.|-+=+-.++-..-.+.++.||+...++||++ ||+.+..+...+..+|||+|- ..
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t 302 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVGPGAMCT 302 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCcCCcccc
Confidence 467789999999999998885544333334455667776535899998 899999999999999999998 44
Q ss_pred ccCCCh---HH---HHHHHHHHHHcCCcEEEE--cCCHHHHHHHhccCCCcEEeecc
Q 015899 269 AAVLPD---LD---IRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 269 aaiL~~---~~---L~~Li~~a~~LGL~~LVE--Vht~eEl~rAl~l~Ga~iIGINn 317 (398)
.+.+++ .+ +.++.+.++..|+.++.| +++..++.+|+.+ ||+.+++..
T Consensus 303 tr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~-GA~~vm~g~ 358 (475)
T TIGR01303 303 TRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAA-GASNVMVGS 358 (475)
T ss_pred CccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHc-CCCEEeech
Confidence 454422 33 444555567789999998 6899999999998 999888863
No 223
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=97.02 E-value=0.0087 Score=59.79 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=88.8
Q ss_pred CCcEEeccccCCHHHHHHHH----HcCcCEEEEecc--------------CC-ChHHHHHHHHHHH-HcCCcEEEEcCC-
Q 015899 239 KCPLLCKEFIVDAWQIYYAR----TKGADAVLLIAA--------------VL-PDLDIRYMTKICK-LLGLTALVEVHD- 297 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eAr----~~GADaVLLiaa--------------iL-~~~~L~~Li~~a~-~LGL~~LVEVht- 297 (398)
.-|+...=+.-+|.++.+|. ..|+|.|=|..- +| +++.+.++++..+ .+++.+-|.+..
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g 132 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLG 132 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESE
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccc
Confidence 35776666667777766663 347888888754 34 4456888888877 467776555531
Q ss_pred -------HHHHHHHhccCCCcEEeeccccCccc---ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHc
Q 015899 298 -------EREMDRVLGIEGIELIGINNRNLETF---EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA 367 (398)
Q Consensus 298 -------~eEl~rAl~l~Ga~iIGINnRdL~tf---~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~ 367 (398)
..++-+.+.-.|++.|.|-.|.-... ..|.+...++.+.+ .+++|+-|||+|++|+.++.+.
T Consensus 133 ~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--------~ipvi~NGdI~s~~d~~~~~~~ 204 (309)
T PF01207_consen 133 WDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--------PIPVIANGDIFSPEDAERMLEQ 204 (309)
T ss_dssp CT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---------TSEEEEESS--SHHHHHHHCCC
T ss_pred cccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--------cceeEEcCccCCHHHHHHHHHh
Confidence 23333333334999999987744332 46777777776652 4899999999999999999887
Q ss_pred -CCCEEEEcccccCCCChHHH
Q 015899 368 -GVKAVLVGESIVKQDDPGKG 387 (398)
Q Consensus 368 -GadaVLVGeaLmk~~dp~~~ 387 (398)
|+|||.||.+++..|..-..
T Consensus 205 tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 205 TGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp H-SSEEEESHHHCC-CCHHCH
T ss_pred cCCcEEEEchhhhhcCHHhhh
Confidence 99999999999999987764
No 224
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.02 E-value=0.0039 Score=59.04 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=67.7
Q ss_pred cCCHHHHHHHhccCCCcEEeeccccC--cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 295 VHDEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 295 Vht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
..++.|+.+.++..|++-|=+...+- +....|++...++.+. .++++++.|||.+.+|+.++.+.|++.|
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~--------~~~pv~~~ggi~~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEE--------CFMPLTVGGGIRSLEDAKKLLSLGADKV 100 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHh--------CCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 34777777766545777554443322 2345677777888765 3578999999999999999999999999
Q ss_pred EEcccccCCCChHHHHHhhhc
Q 015899 373 LVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 373 LVGeaLmk~~dp~~~i~~L~~ 393 (398)
++|+++++.++..+.+.+.++
T Consensus 101 ilg~~~l~~~~~~~~~~~~~~ 121 (232)
T TIGR03572 101 SINTAALENPDLIEEAARRFG 121 (232)
T ss_pred EEChhHhcCHHHHHHHHHHcC
Confidence 999999998876666665544
No 225
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.01 E-value=0.036 Score=56.52 Aligned_cols=183 Identities=19% Similarity=0.147 Sum_probs=123.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEE-----eccCCcCCC----CHHHHHHHHhcCCCCcEEec
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCK 245 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISV-----LTd~~~F~G----s~edL~~Ir~a~v~lPVL~K 245 (398)
+++.+||+ | ..+....-..++|+...+.||..+.. -|-|.-|+| +++.|..+++. ..+|++.-
T Consensus 92 ~~~~~IAG-----P--CsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~-~Gl~v~te 163 (335)
T PRK08673 92 GKPVVIAG-----P--CSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE-TGLPIVTE 163 (335)
T ss_pred CceEEEEe-----c--CccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH-cCCcEEEe
Confidence 45677777 3 34555556778899999999997665 266677888 56667777765 79999974
Q ss_pred cccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccc-
Q 015899 246 EFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNR- 318 (398)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnR- 318 (398)
= .|+.++..+... +|.+-+.+..+.+ ..|++.+.+.|..+++.-. |.+|+..|.+. .|..-|-+-.|
T Consensus 164 v--~d~~~~~~l~~~-vd~lqIgAr~~~N---~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG 237 (335)
T PRK08673 164 V--MDPRDVELVAEY-VDILQIGARNMQN---FDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERG 237 (335)
T ss_pred e--CCHHHHHHHHHh-CCeEEECcccccC---HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4 599999999888 9988888877776 3466667788999999875 78888877643 25543333334
Q ss_pred -----cCcccccChhhHHHHhhhhcccccccCCceEEE-ec-CCCC----HHHHHHHHHcCCCEEEEccccc
Q 015899 319 -----NLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG-ES-GLFT----PDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 319 -----dL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA-ES-GI~t----~eD~~~l~~~GadaVLVGeaLm 379 (398)
+++...+|+.....+.+. .+.+||. -| +... +.-......+||||++|-....
T Consensus 238 ~~tf~~~~~~~ldl~ai~~lk~~--------~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 238 IRTFETATRNTLDLSAVPVIKKL--------THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred CCCCCCcChhhhhHHHHHHHHHh--------cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 333345566554444332 2345533 22 2222 3556777789999999986554
No 226
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.01 E-value=0.011 Score=60.18 Aligned_cols=117 Identities=14% Similarity=0.135 Sum_probs=83.3
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEEE-cCCHHHHHHHhccCCCcEE--eec------cccCcccccC-h
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVE-VHDEREMDRVLGIEGIELI--GIN------NRNLETFEVD-N 327 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LVE-Vht~eEl~rAl~l~Ga~iI--GIN------nRdL~tf~vD-l 327 (398)
+|+|.|.++.+-=..+..-++++..+.. ++++++- |-|.+-++..+.+ |||.| ||. .|..+.+.+- +
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~a-GAD~vKVGIGpGSiCtTr~vtGvG~PQl 199 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILS-GADIVKVGIGPGSVCTTRVKTGVGYPQL 199 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHc-CCCEEEEcccCCccccCccccccChhHH
Confidence 4999999998865445566777777753 6776554 6788888887886 99965 443 4555555443 2
Q ss_pred hhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 328 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 328 ~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
....+.++.. ...++++||-|||.++-|+.+...+|||+|.+|+-|-...
T Consensus 200 tAV~~~a~~a-----~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~ 249 (346)
T PRK05096 200 SAVIECADAA-----HGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHE 249 (346)
T ss_pred HHHHHHHHHH-----HHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcc
Confidence 2223333321 1247899999999999999999999999999999886543
No 227
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.018 Score=55.78 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEE------eccccCCHH-------HHHHHHHcCcCE
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG---SFENLEAVRSAGVKCPLL------CKEFIVDAW-------QIYYARTKGADA 264 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL------~KDFIid~~-------QI~eAr~~GADa 264 (398)
+-+...+++||..|=+. +.-.=+| |+--++.+++. .++||. ..||+.+.- .|..++.+|+++
T Consensus 12 ~~l~~A~~~GAdRiELC-~~La~GG~TPSyG~~k~a~~~-~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~G 89 (241)
T COG3142 12 EGLLAAQAAGADRIELC-DALAEGGLTPSYGVIKEAVEL-SKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQG 89 (241)
T ss_pred hhHHHHHHcCCceeehh-hccccCCCCCCHHHHHHHHhh-cCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCc
Confidence 45667788999887653 3333344 78899999886 788875 378987764 478999999999
Q ss_pred EEEeccC----CChHHHHHHHHHHHHcCCcE---EEEcCCHHH-HHHHhccCCCcEEeeccccCccccc-----ChhhHH
Q 015899 265 VLLIAAV----LPDLDIRYMTKICKLLGLTA---LVEVHDERE-MDRVLGIEGIELIGINNRNLETFEV-----DNSNTK 331 (398)
Q Consensus 265 VLLiaai----L~~~~L~~Li~~a~~LGL~~---LVEVht~eE-l~rAl~l~Ga~iIGINnRdL~tf~v-----Dl~~t~ 331 (398)
|.+.+-- ++-+.+++|++.+..|+++. +=++.|..+ ++...++ |+. |-|+.-.. .+.+..
T Consensus 90 VV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~-Gv~------RILTsGg~~sa~eg~~~l~ 162 (241)
T COG3142 90 VVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIEL-GVE------RILTSGGKASALEGLDLLK 162 (241)
T ss_pred EEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHC-CCc------EEecCCCcCchhhhHHHHH
Confidence 9998753 34456999999888777764 445556554 4555555 553 44433322 255666
Q ss_pred HHhhhhcccccccCCceEEEecCCCCHHHHHHH-HHcCCCE
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV-QEAGVKA 371 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l-~~~Gada 371 (398)
+|+++. ...+.++..+|| +++.+..+ ...|+.-
T Consensus 163 ~li~~a------~gri~Im~GaGV-~~~N~~~l~~~tg~~e 196 (241)
T COG3142 163 RLIEQA------KGRIIIMAGAGV-RAENIAELVLLTGVTE 196 (241)
T ss_pred HHHHHh------cCCEEEEeCCCC-CHHHHHHHHHhcCchh
Confidence 777652 235678888999 67777776 6667643
No 228
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.98 E-value=0.0033 Score=60.84 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCC----HHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs----~edL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+.+..++|+..+++||++|+| |. .+.|. ++.++.++++ + ++||+.-.-|.+..+..+...+|||+|.+.-.
T Consensus 147 ~~~~~~~a~~l~~aGad~i~V--d~-~~~g~~~a~~~~I~~i~~~-~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~ 222 (231)
T TIGR00736 147 PLDELIDALNLVDDGFDGIHV--DA-MYPGKPYADMDLLKILSEE-FNDKIIIGNNSIDDIESAKEMLKAGADFVSVARA 222 (231)
T ss_pred cchHHHHHHHHHHcCCCEEEE--ee-CCCCCchhhHHHHHHHHHh-cCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHh
Confidence 347889999999999999999 44 44453 7778888886 7 49999999999999999999999999999777
Q ss_pred CCCh
Q 015899 271 VLPD 274 (398)
Q Consensus 271 iL~~ 274 (398)
+|.+
T Consensus 223 ~l~~ 226 (231)
T TIGR00736 223 ILKG 226 (231)
T ss_pred hccC
Confidence 7654
No 229
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.97 E-value=0.0073 Score=60.32 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=67.4
Q ss_pred HHHHHHHHHHc---CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 277 IRYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 277 L~~Li~~a~~L---GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+.+.++.+++. ...+-|||.|.+|+..|+++ |+++|-.-|-+ ++...+.++.+ +..+.+-+.|
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a-gaDiImLDnms-------pe~l~~av~~~------~~~~~leaSG 248 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA-GADIIMLDNMS-------LEQIEQAITLI------AGRSRIECSG 248 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc-CCCEEEECCCC-------HHHHHHHHHHh------cCceEEEEEC
Confidence 45555666543 46789999999999999997 99999887643 44455655542 2357888899
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
|| |++.+......|+|.+.+|.--
T Consensus 249 GI-~~~ni~~yA~tGVD~Is~galt 272 (290)
T PRK06559 249 NI-DMTTISRFRGLAIDYVSSGSLT 272 (290)
T ss_pred CC-CHHHHHHHHhcCCCEEEeCccc
Confidence 99 9999999999999999999633
No 230
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.97 E-value=0.12 Score=51.57 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=97.3
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE-----------------cC
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE-----------------VH 296 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE-----------------Vh 296 (398)
++|| |.-|-.-|...+.+|..+|-+.|..+++-|+-++ .++.+++||..|+.+=.| -.
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT 156 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYA 156 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCC
Confidence 4787 6778777888899999999999999999998543 788999999888877222 24
Q ss_pred CHHHHHHHhccCCCcEEeeccc----cCc-ccccChhhHHHHhhhhcccccccCCceEEE--ecCCCCHHHHHHHHHcCC
Q 015899 297 DEREMDRVLGIEGIELIGINNR----NLE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQEAGV 369 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnR----dL~-tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~~Ga 369 (398)
|++|+..-.+..|+|.+.+.-- .++ .-+.|++...++.+. -++++|. .||+ ..++++++.++|+
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~--------~~iPLVLHGgSG~-~~e~~~~ai~~Gi 227 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDF--------TGVPLVLHGGTGI-PTADIEKAISLGT 227 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHH--------HCCCEEEeCCCCC-CHHHHHHHHHcCC
Confidence 7778777776458887766422 222 235677776666553 1455554 4555 4588999999999
Q ss_pred CEEEEcccccC
Q 015899 370 KAVLVGESIVK 380 (398)
Q Consensus 370 daVLVGeaLmk 380 (398)
.-|=|++.+..
T Consensus 228 ~KiNi~T~l~~ 238 (285)
T PRK07709 228 SKINVNTENQI 238 (285)
T ss_pred eEEEeChHHHH
Confidence 99999998754
No 231
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=96.95 E-value=0.0047 Score=60.82 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCcEEec--ccc---CCHH-HHHHHHHcCcCEEEEeccCC---------Ch-HHHHHHHHHHHH-cCCcEEEEcC----C
Q 015899 239 KCPLLCK--EFI---VDAW-QIYYARTKGADAVLLIAAVL---------PD-LDIRYMTKICKL-LGLTALVEVH----D 297 (398)
Q Consensus 239 ~lPVL~K--DFI---id~~-QI~eAr~~GADaVLLiaaiL---------~~-~~L~~Li~~a~~-LGL~~LVEVh----t 297 (398)
++||+.- ... ...| +..+....|||++=|..+.- .+ +...++++..++ ..+.++|-+. +
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~ 175 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTD 175 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSC
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCc
Confidence 6788732 111 2233 33344458999999987642 12 225556655554 4777877764 3
Q ss_pred HHHHHH---HhccCCCcEEeeccc-------cCcccccC-------------hhhHHHHhhhhcccccccCCceEEEecC
Q 015899 298 EREMDR---VLGIEGIELIGINNR-------NLETFEVD-------------NSNTKKLLEGERGEIIRQKNIIVVGESG 354 (398)
Q Consensus 298 ~eEl~r---Al~l~Ga~iIGINnR-------dL~tf~vD-------------l~~t~~L~~~i~~~~i~~~~v~vVAESG 354 (398)
...+.. +.+ .|++-|...|+ |+++...- ...+.+.+..++.. + +.++.+|+.||
T Consensus 176 ~~~~~~~~~~~~-~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~-~-~~~i~Iig~GG 252 (295)
T PF01180_consen 176 IEPFAIAAELAA-DGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKA-L-GQDIPIIGVGG 252 (295)
T ss_dssp HHHHHHHHHHHT-HTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHH-T-TTSSEEEEESS
T ss_pred hHHHHHHHHhhc-cceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhc-c-ccceEEEEeCC
Confidence 333323 333 37776654443 33332211 12234444333221 2 34699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccc-cCCCChHHHH
Q 015899 355 LFTPDDIAYVQEAGVKAVLVGESI-VKQDDPGKGI 388 (398)
Q Consensus 355 I~t~eD~~~l~~~GadaVLVGeaL-mk~~dp~~~i 388 (398)
|+|.+|+.++..+||++|=|++++ ++.++....+
T Consensus 253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i 287 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRI 287 (295)
T ss_dssp --SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHH
T ss_pred cCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHH
Confidence 999999999999999999999999 5566654444
No 232
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.94 E-value=0.0092 Score=59.38 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHc---CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEe
Q 015899 276 DIRYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE 352 (398)
Q Consensus 276 ~L~~Li~~a~~L---GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAE 352 (398)
.+.+.++.+++. ...+-|||.|++|+..|+++ |+++|-.-|-+. +...+.++.+ +....+-+.
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~-gaDiImLDn~s~-------e~l~~av~~~------~~~~~leaS 243 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA-GVDTIMLDNFSL-------DDLREGVELV------DGRAIVEAS 243 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc-CCCEEEECCCCH-------HHHHHHHHHh------CCCeEEEEE
Confidence 355666666653 36789999999999999997 999999876443 4445555432 124578888
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 353 SGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 353 SGI~t~eD~~~l~~~GadaVLVGea 377 (398)
||| |++.+......|+|.+.+|.-
T Consensus 244 GgI-~~~ni~~yA~tGVD~Is~gal 267 (281)
T PRK06543 244 GNV-NLNTVGAIASTGVDVISVGAL 267 (281)
T ss_pred CCC-CHHHHHHHHhcCCCEEEeCcc
Confidence 889 999999999999999999963
No 233
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.94 E-value=0.11 Score=51.63 Aligned_cols=134 Identities=17% Similarity=0.231 Sum_probs=99.6
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE-----------------c
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE-----------------V 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE-----------------V 295 (398)
.++|| |.-|-.-|...|.+|..+|-+.|.++++-|+.++ .++++++||..|+.+=.| -
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~ 147 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLL 147 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccC
Confidence 57897 5777777888999999999999999999998644 678889999888877332 2
Q ss_pred CCHHHHHHHhccCCCcEEeecc----ccCc--ccccChhhHHHHhhhhcccccccCCceEEE--ecCCCCHHHHHHHHHc
Q 015899 296 HDEREMDRVLGIEGIELIGINN----RNLE--TFEVDNSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQEA 367 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINn----RdL~--tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~~ 367 (398)
.+++|+.+..+..|+|.+.+.. -.+. +-..|++...++.+.+ ++++|- .||+ ..++++++.++
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--------~vPLVlHGgSG~-~~e~~~~ai~~ 218 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--------NVPLVLHGGSGI-PDEQIRKAIKL 218 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--------CCCEEEeCCCCC-CHHHHHHHHHc
Confidence 3577777777645889887752 2332 2456788777776652 344444 5555 55779999999
Q ss_pred CCCEEEEcccccC
Q 015899 368 GVKAVLVGESIVK 380 (398)
Q Consensus 368 GadaVLVGeaLmk 380 (398)
|+.-|=|++.+..
T Consensus 219 Gi~KiNi~T~l~~ 231 (276)
T cd00947 219 GVCKININTDLRL 231 (276)
T ss_pred CCeEEEeChHHHH
Confidence 9999999998743
No 234
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.91 E-value=0.023 Score=58.50 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEec---cCCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 196 DFDPVEIARSYEKGGAACLSILT---DEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLT---d~~~F~--Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+.+..++++...++|++.|.|-- |..|.+ |++.++..+.+. .++||+.++ +.++....++..+|||+|.+...
T Consensus 140 ~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIaG~-V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 140 PQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIVGG-CVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEEeC-CCCHHHHHHHHHcCCCEEEECCC
Confidence 35678999999999999999842 444544 358888888776 799999966 68888888888999999977511
Q ss_pred ---------CC--ChHHHHHHHHHH---HH----c---CCcEEEE--cCCHHHHHHHhccCCCcEEeeccccCcccc
Q 015899 271 ---------VL--PDLDIRYMTKIC---KL----L---GLTALVE--VHDEREMDRVLGIEGIELIGINNRNLETFE 324 (398)
Q Consensus 271 ---------iL--~~~~L~~Li~~a---~~----L---GL~~LVE--Vht~eEl~rAl~l~Ga~iIGINnRdL~tf~ 324 (398)
.+ .-.++..+.+.+ +. + ++.++.+ +++..++.+|+.+ ||+-+.+..+=..+-+
T Consensus 218 ~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlal-GAd~Vm~Gs~fa~t~E 293 (368)
T PRK08649 218 PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIAC-GADAVMLGSPLARAAE 293 (368)
T ss_pred CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHc-CCCeecccchhccccc
Confidence 11 112444444432 22 2 5788887 5799999999998 9999888766554443
No 235
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.91 E-value=0.054 Score=53.44 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=116.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecc-----CCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCE
Q 015899 194 REDFDPVEIARSYEKGGAACLSILTD-----EKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADA 264 (398)
Q Consensus 194 ~~~~dp~~iA~aY~~~GA~aISVLTd-----~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADa 264 (398)
.+..-..++|+...+.|+..+.+-.+ +..|+| .+..|+.+++. ..+|++.-= .|+.++..+... +|.
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~-~Gl~~~te~--~d~~~~~~l~~~-vd~ 113 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK-YNLPVVTEV--MDTRDVEEVADY-ADM 113 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH-cCCCEEEee--CChhhHHHHHHh-CCE
Confidence 33445678899999999999998744 677786 44555555654 789998743 588999988888 998
Q ss_pred EEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccc------cCcccccChhhHHH
Q 015899 265 VLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNR------NLETFEVDNSNTKK 332 (398)
Q Consensus 265 VLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnR------dL~tf~vDl~~t~~ 332 (398)
+-+.+..+.+. .|++.+..+|+.+++.-. +.+|+..|.+. .|..-+-+-.| ++....+|+.....
T Consensus 114 ~kIga~~~~n~---~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~ 190 (266)
T PRK13398 114 LQIGSRNMQNF---ELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAV 190 (266)
T ss_pred EEECcccccCH---HHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHH
Confidence 87777777663 355666688999999986 78888877643 24433333333 33333445554444
Q ss_pred HhhhhcccccccCCceEEE-ecCCCC-----HHHHHHHHHcCCCEEEEcccccC
Q 015899 333 LLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaLmk 380 (398)
+... .+++|+. .|--.+ +........+||+|++|-..+.-
T Consensus 191 lk~~--------~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~p 236 (266)
T PRK13398 191 IKEL--------SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEP 236 (266)
T ss_pred HHhc--------cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCc
Confidence 3322 2345555 344334 77788888999999999876653
No 236
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.90 E-value=0.011 Score=59.11 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=67.8
Q ss_pred HHHHHHHHHHc--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecC
Q 015899 277 IRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 354 (398)
Q Consensus 277 L~~Li~~a~~L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESG 354 (398)
+.+.++.+++. ...+-|||.|++|+..|+++ |+++|-.-|-+. +...+.++.+ +..+.+-+.||
T Consensus 192 i~~av~~~r~~~~~~kIeVEvetleea~eA~~a-GaDiImLDnmsp-------e~l~~av~~~------~~~~~lEaSGG 257 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQIEVETLAQLETALAH-GAQSVLLDNFTL-------DMMREAVRVT------AGRAVLEVSGG 257 (294)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc-CCCEEEECCCCH-------HHHHHHHHhh------cCCeEEEEECC
Confidence 45566666654 25688999999999999997 999999876443 3445554432 23567888888
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 355 LFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 355 I~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
| |++.+......|+|.+.+|.-....
T Consensus 258 I-t~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 258 V-NFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred C-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 9 9999999999999999999754443
No 237
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.90 E-value=0.0064 Score=60.57 Aligned_cols=93 Identities=8% Similarity=0.098 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHc--CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 276 DIRYMTKICKLL--GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 276 ~L~~Li~~a~~L--GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
.+.+.++.+++. ...+-|||.|++|+..|+++ |+++|-.-|-+. +...+..+.++. . ...+.+-+.|
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a-gaDiI~LDn~~~-------e~l~~av~~~~~--~-~~~~~leaSG 243 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA-QPDVLQLDKFSP-------QQATEIAQIAPS--L-APHCTLSLAG 243 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc-CCCEEEECCCCH-------HHHHHHHHHhhc--c-CCCeEEEEEC
Confidence 355566666653 56799999999999999997 999999865433 333333332110 0 1356788888
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
|| |++.+..+...|+|.+.+|. |+.+
T Consensus 244 GI-~~~ni~~yA~tGvD~Is~ga-l~~a 269 (284)
T PRK06096 244 GI-NLNTLKNYADCGIRLFITSA-PYYA 269 (284)
T ss_pred CC-CHHHHHHHHhcCCCEEEECc-cccC
Confidence 99 99999999999999987764 4544
No 238
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.89 E-value=0.11 Score=51.89 Aligned_cols=173 Identities=15% Similarity=0.189 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH----HHHhcCCCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~----~Ir~a~v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
..+-++.++.++..|==.+...+-..+++.+. .+.+. .++|| |.-|-.-+...|.+|..+|-+.|..+++-|+-
T Consensus 32 ~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~-~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 32 QAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTT-YNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 33444555555544443333222112333332 22333 57897 57787778889999999999999999999985
Q ss_pred HH----HHHHHHHHHHcCCcEEEE-------------------cCCHHHHHHHhccCCCcEEeec----cccCc-ccccC
Q 015899 275 LD----IRYMTKICKLLGLTALVE-------------------VHDEREMDRVLGIEGIELIGIN----NRNLE-TFEVD 326 (398)
Q Consensus 275 ~~----L~~Li~~a~~LGL~~LVE-------------------Vht~eEl~rAl~l~Ga~iIGIN----nRdL~-tf~vD 326 (398)
++ .++++++||.+|+.+=.| -.+++|+.+-.+..|+|.+.+. .-.++ +-+.|
T Consensus 111 eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld 190 (286)
T PRK12738 111 AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKID 190 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCC
Confidence 44 788999999888877222 2366777766654588877665 22332 24577
Q ss_pred hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 327 NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 327 l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++...++.+.+ .-..++=..||+. .++++++.++|+.-|=|++.|..
T Consensus 191 fd~l~~I~~~~------~vPLVLHGgSG~~-~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 191 FQRLAEIREVV------DVPLVLHGASDVP-DEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred HHHHHHHHHHh------CCCEEEeCCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence 88877776642 1224445677885 88999999999999999998854
No 239
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=96.88 E-value=0.0032 Score=61.20 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHHHH----------HHhcc-----------
Q 015899 255 YYARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMD----------RVLGI----------- 307 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eEl~----------rAl~l----------- 307 (398)
...+++|++.|+++.+=. +++.+..=++.|.+.||.++++|....|-. +-+..
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~~~ 157 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPV 157 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhcCe
Confidence 345668999999999832 567788888999999999999998543221 11210
Q ss_pred ----CCCcEEeeccccCcccccChhhHHHHhhhhcccc---c--ccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEccc
Q 015899 308 ----EGIELIGINNRNLETFEVDNSNTKKLLEGERGEI---I--RQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGES 377 (398)
Q Consensus 308 ----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~---i--~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGea 377 (398)
+....||.+ + ..+.+...+....++... . ....+.++..|+|+. +++..+.+.+ +||+|||.+
T Consensus 158 iIAYEPvWAIGtG-~-----~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~A 230 (242)
T cd00311 158 VIAYEPVWAIGTG-K-----TASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNP-ENAAELLAQPDIDGVLVGGA 230 (242)
T ss_pred EEEECCHHHhCCC-C-----CCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCH-HHHHHHhcCCCCCEEEeehH
Confidence 011223433 1 122332222222221100 0 013578899999955 9999999998 999999999
Q ss_pred ccCCCChH
Q 015899 378 IVKQDDPG 385 (398)
Q Consensus 378 Lmk~~dp~ 385 (398)
-++.++..
T Consensus 231 sl~~~~f~ 238 (242)
T cd00311 231 SLKAESFL 238 (242)
T ss_pred hhCHHHHH
Confidence 99755543
No 240
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=96.88 E-value=0.0065 Score=57.32 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe---ccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVL---Td~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..++.++++.|.+.||+.|.+. -+...++-+++.++.+++. +++||+.-..|.+..++.++...|||+|++..+++
T Consensus 144 ~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 144 EVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALY 222 (230)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 4799999999999999988876 3333454467888888886 89999999999999999999999999999987776
Q ss_pred Ch
Q 015899 273 PD 274 (398)
Q Consensus 273 ~~ 274 (398)
..
T Consensus 223 ~~ 224 (230)
T TIGR00007 223 EG 224 (230)
T ss_pred cC
Confidence 43
No 241
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.88 E-value=0.0068 Score=57.03 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=61.9
Q ss_pred CCHHHHHHHhccCCCcEEeeccccC--cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEE
Q 015899 296 HDEREMDRVLGIEGIELIGINNRNL--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVL 373 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVL 373 (398)
.+..++-+.+.-.|++.+-|-..+- .....+.+...++.+. .++++..-|||.+++|++++.+.|||.|+
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~--------~~~pv~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA--------VGIPVQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh--------cCCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 3555555554334666555542222 2234456666666554 25789999999999999999999999999
Q ss_pred EcccccCCCChHHHHHhhhc
Q 015899 374 VGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 374 VGeaLmk~~dp~~~i~~L~~ 393 (398)
||++++..++....+.+-++
T Consensus 101 igs~~l~dp~~~~~i~~~~g 120 (234)
T cd04732 101 IGTAAVKNPELVKELLKEYG 120 (234)
T ss_pred ECchHHhChHHHHHHHHHcC
Confidence 99999988776666555544
No 242
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.86 E-value=0.029 Score=53.85 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc--CCCCcEEe-cccc--CCH-----HHHHHHHHcCcCEEEE
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLC-KEFI--VDA-----WQIYYARTKGADAVLL 267 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a--~v~lPVL~-KDFI--id~-----~QI~eAr~~GADaVLL 267 (398)
+..++++...+.|..++.| .+.++..+++. +..+.|-+ =+|. ..+ .++.+|...|||-|-+
T Consensus 23 ~i~~~~~~A~~~~~~avcv---------~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~ 93 (221)
T PRK00507 23 DIDKLCDEAKEYGFASVCV---------NPSYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDM 93 (221)
T ss_pred HHHHHHHHHHHhCCeEEEE---------CHHHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEee
Confidence 3444555566678999888 57788888764 12233211 1442 222 3677888899998776
Q ss_pred ecc---CCCh--HHHHHHHHHHHH----cCCcEEEEcCC--HHHHHHHhcc---CCCcEEeeccccCcccccChhhHHHH
Q 015899 268 IAA---VLPD--LDIRYMTKICKL----LGLTALVEVHD--EREMDRVLGI---EGIELIGINNRNLETFEVDNSNTKKL 333 (398)
Q Consensus 268 iaa---iL~~--~~L~~Li~~a~~----LGL~~LVEVht--~eEl~rAl~l---~Ga~iIGINnRdL~tf~vDl~~t~~L 333 (398)
..- +.++ +.+.+-+..++. .-+.+++|... .+|+.++.++ .|+++|=+|. .+..-...++....+
T Consensus 94 Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsT-G~~~~gat~~~v~~m 172 (221)
T PRK00507 94 VINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTST-GFSTGGATVEDVKLM 172 (221)
T ss_pred eccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCC-CCCCCCCCHHHHHHH
Confidence 433 2332 222222222222 23777888874 5565554432 3899887763 222222345554444
Q ss_pred hhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 334 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 334 ~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 377 (398)
.+.+ +..+.+.+.|||.|.+|+..+.++||+- +|++
T Consensus 173 ~~~~------~~~~~IKasGGIrt~~~a~~~i~aGA~r--iGtS 208 (221)
T PRK00507 173 RETV------GPRVGVKASGGIRTLEDALAMIEAGATR--LGTS 208 (221)
T ss_pred HHHh------CCCceEEeeCCcCCHHHHHHHHHcCcce--EccC
Confidence 4432 3468899999999999999999999875 5654
No 243
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.85 E-value=0.006 Score=60.63 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC-----------------------------------CHHHHHHHHhcCCCCcEE--
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG-----------------------------------SFENLEAVRSAGVKCPLL-- 243 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G-----------------------------------s~edL~~Ir~a~v~lPVL-- 243 (398)
+=|....+.||+.|+- |...|.+. +++.|+.+++. +++||+
T Consensus 123 eEal~a~~~Gad~I~T-Tl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-~~iPVV~i 200 (283)
T cd04727 123 GEALRRISEGAAMIRT-KGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-GRLPVVNF 200 (283)
T ss_pred HHHHHHHHCCCCEEEe-cCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-cCCCeEEE
Confidence 4455566779999987 55555543 56788888886 789997
Q ss_pred eccccCCHHHHHHHHHcCcCEEEEeccCCC---h-HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeecccc
Q 015899 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLP---D-LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRN 319 (398)
Q Consensus 244 ~KDFIid~~QI~eAr~~GADaVLLiaaiL~---~-~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRd 319 (398)
+-..|.+|.++.++..+|||+|+++.++.. + ...++|.+.... |-+-+.+.|+.. .+ |-.+.|+|-+.
T Consensus 201 AeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~-----~~~~~~~~e~~~--~~-~~~m~~~~~~~ 272 (283)
T cd04727 201 AAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH-----YDDPEILAEVSE--GL-GEAMVGIDIAS 272 (283)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh-----cCCHHHHHHHHc--cc-ccCCCCccccc
Confidence 888878999999999999999999999873 2 235666555444 222344444333 44 55688888665
Q ss_pred Cc
Q 015899 320 LE 321 (398)
Q Consensus 320 L~ 321 (398)
++
T Consensus 273 ~~ 274 (283)
T cd04727 273 LK 274 (283)
T ss_pred CC
Confidence 53
No 244
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.85 E-value=0.012 Score=58.81 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=67.8
Q ss_pred HHHHHHHHHH--cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecC
Q 015899 277 IRYMTKICKL--LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 354 (398)
Q Consensus 277 L~~Li~~a~~--LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESG 354 (398)
+.+.++.+++ ....+-|||.|.+|+..|++. |+++|-.-|-+ ++..++.++.++. . ...+.+.+.||
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~-gaDiI~LDnm~-------~e~vk~av~~~~~--~-~~~v~ieaSGG 254 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE-GAELVLLDNFP-------VWQTQEAVQRRDA--R-APTVLLESSGG 254 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc-CCCEEEeCCCC-------HHHHHHHHHHHhc--c-CCCEEEEEECC
Confidence 4445555554 246689999999999999997 99999887533 3444554443211 1 24578888899
Q ss_pred CCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 355 LFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 355 I~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
| |++.+..+.+.|+|.+.+|.-...
T Consensus 255 I-~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 255 L-TLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred C-CHHHHHHHHhcCCCEEEeChhhcC
Confidence 9 999999999999999999976553
No 245
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.84 E-value=0.016 Score=58.78 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
|+.+++++|.++|+++||..+.++.+.+.++...++ |++++=|-.+|+++ +.....+++ .+.++|-
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KIaS~~~~n----~pLL~~~A~---------~gkPvil 138 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDL-GVPRFKIPSGEITN----APLLKKIAR---------FGKPVIL 138 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc-CCCEEEECcccccC----HHHHHHHHh---------cCCcEEE
Confidence 677889999999999999999999999999999997 99999999998865 333344433 4678888
Q ss_pred ecCCCCHHHHHH----HHHcCCC
Q 015899 352 ESGLFTPDDIAY----VQEAGVK 370 (398)
Q Consensus 352 ESGI~t~eD~~~----l~~~Gad 370 (398)
.-|..|.+++.. +.+.|.+
T Consensus 139 StGmatl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 139 STGMATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCC
Confidence 888899999865 4456775
No 246
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.83 E-value=0.012 Score=58.65 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=65.4
Q ss_pred HHHHHHHHHHc---CCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 277 IRYMTKICKLL---GLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 277 L~~Li~~a~~L---GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+.+.++.+++. ...+-|||.|++|+..|+++ |+++|-.-|-+. +...+.++.+ ....++-+.|
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~-gaDiI~LDn~s~-------e~l~~av~~~------~~~~~leaSG 245 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL-GVDAVLLDNMTP-------DTLREAVAIV------AGRAITEASG 245 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc-CCCEEEeCCCCH-------HHHHHHHHHh------CCCceEEEEC
Confidence 44455555543 35688999999999999997 999999886543 4445554432 1234678888
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
|| |++.+..+...|+|.+.+|.-.
T Consensus 246 GI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 246 RI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred CC-CHHHHHHHHhcCCCEEEeChhh
Confidence 99 9999999999999999999643
No 247
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.83 E-value=0.18 Score=50.46 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=97.7
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE-------------------
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE------------------- 294 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE------------------- 294 (398)
++|| |.-|-..|...|.+|..+|-+.|..+++-|+-++ .++++++||..|+.+=.|
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~ 156 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESAL 156 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccc
Confidence 7897 5778777888999999999999999999998543 778889999888877333
Q ss_pred cCCHHHHHHHhccCCCcEEeeccc----cCcc-cc-cChhhHHHHhhhhcccccccCCceEEE--ecCCCCHHHHHHHHH
Q 015899 295 VHDEREMDRVLGIEGIELIGINNR----NLET-FE-VDNSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQE 366 (398)
Q Consensus 295 Vht~eEl~rAl~l~Ga~iIGINnR----dL~t-f~-vDl~~t~~L~~~i~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~ 366 (398)
-.+++|+.+-.+..|+|.+.|.-- .++. -. .|++...++.+.+ ++++|- .||+ ..++++++.+
T Consensus 157 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--------~vPLVlHGgSG~-~~e~~~~ai~ 227 (288)
T TIGR00167 157 YTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--------NLPLVLHGGSGI-PDEEIKKAIS 227 (288)
T ss_pred CCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--------CCCEEEeCCCCC-CHHHHHHHHH
Confidence 125577777766458898766532 2221 23 6788877776542 455554 5555 4478999999
Q ss_pred cCCCEEEEccccc
Q 015899 367 AGVKAVLVGESIV 379 (398)
Q Consensus 367 ~GadaVLVGeaLm 379 (398)
+|+.-|=|++.+-
T Consensus 228 ~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 228 LGVVKVNIDTELQ 240 (288)
T ss_pred cCCeEEEcChHHH
Confidence 9999999998874
No 248
>PRK14567 triosephosphate isomerase; Provisional
Probab=96.83 E-value=0.0065 Score=59.62 Aligned_cols=126 Identities=18% Similarity=0.146 Sum_probs=83.1
Q ss_pred HHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHHHH--------------HHhc------c--
Q 015899 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMD--------------RVLG------I-- 307 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eEl~--------------rAl~------l-- 307 (398)
..+.+|++.|+++.+=. +++.+..=++.|.+.||.++++|..-.|-. .++. +
T Consensus 80 mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~~~~ 159 (253)
T PRK14567 80 MLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQLAK 159 (253)
T ss_pred HHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHHhCC
Confidence 35667999999999833 455577777788899999999998543322 1111 0
Q ss_pred -----CCCcEEeeccccCcccccChhhHHHHhhhhcc------cccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEc
Q 015899 308 -----EGIELIGINNRNLETFEVDNSNTKKLLEGERG------EIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVG 375 (398)
Q Consensus 308 -----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~------~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVG 375 (398)
+....||.+. ..+.+...+....+|. ..+ ..++.++-.|++ +++++..+.+.+ +||+|||
T Consensus 160 ivIAYEPvWAIGTG~------~as~e~i~~~~~~IR~~l~~~~~~~-a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVG 231 (253)
T PRK14567 160 VVIAYEPVWAIGTGV------VASLEQIQETHQFIRSLLAKVDERL-AKNIKIVYGGSL-KAENAKDILSLPDVDGGLIG 231 (253)
T ss_pred EEEEECCHHHhCCCC------CCCHHHHHHHHHHHHHHHHhhcccc-cccceEEEcCcC-CHHHHHHHHcCCCCCEEEee
Confidence 0112234331 1234444443333322 111 235788999999 999999999888 9999999
Q ss_pred ccccCCCChHHHHH
Q 015899 376 ESIVKQDDPGKGIT 389 (398)
Q Consensus 376 eaLmk~~dp~~~i~ 389 (398)
.+-+++++..+.++
T Consensus 232 gasL~~~~F~~Ii~ 245 (253)
T PRK14567 232 GASLKAAEFNEIIN 245 (253)
T ss_pred hhhhcHHHHHHHHH
Confidence 99998888776664
No 249
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.82 E-value=0.012 Score=59.09 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=65.8
Q ss_pred HHHHHHHHHH--cCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecC
Q 015899 277 IRYMTKICKL--LGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESG 354 (398)
Q Consensus 277 L~~Li~~a~~--LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESG 354 (398)
+.+.++.++. ....+-|||.|.+|+..|+++ |+++|-.-|-+ ++...++++.+ ...+.+-+.||
T Consensus 195 i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~-gaDiI~LDn~s-------~e~~~~av~~~------~~~~~ieaSGG 260 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEVENLDELDQALKA-GADIIMLDNFT-------TEQMREAVKRT------NGRALLEVSGN 260 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc-CCCEEEeCCCC-------hHHHHHHHHhh------cCCeEEEEECC
Confidence 3444444443 346789999999999999997 99999877543 35556666542 23678888899
Q ss_pred CCCHHHHHHHHHcCCCEEEEccc
Q 015899 355 LFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 355 I~t~eD~~~l~~~GadaVLVGea 377 (398)
| |++.+..+.+.|+|.+.+|.-
T Consensus 261 I-~~~ni~~yA~tGVD~Is~gal 282 (296)
T PRK09016 261 V-TLETLREFAETGVDFISVGAL 282 (296)
T ss_pred C-CHHHHHHHHhcCCCEEEeCcc
Confidence 9 999999999999999999963
No 250
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.82 E-value=0.06 Score=56.18 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=97.2
Q ss_pred ccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCC
Q 015899 161 RDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC 240 (398)
Q Consensus 161 ~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~l 240 (398)
++|..+.+.. .+++.|.|-+- + ..+-.+.+.+..++|++.|-|=+-.+.-..-.+.++.+|+...++
T Consensus 129 ~~~~~a~~d~---~~~l~v~aavg---~-------~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~ 195 (404)
T PRK06843 129 EDFPNACKDL---NNKLRVGAAVS---I-------DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNL 195 (404)
T ss_pred hhcchhhhhh---hcCeEEEEEEe---C-------CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCC
Confidence 3444555543 26677877762 1 123457888889999999987443322112235567777752378
Q ss_pred cEEeccccCCHHHHHHHHHcCcCEEEEec--------cCCC---hHHHH---HHHHHHHHcCCcEEEE--cCCHHHHHHH
Q 015899 241 PLLCKEFIVDAWQIYYARTKGADAVLLIA--------AVLP---DLDIR---YMTKICKLLGLTALVE--VHDEREMDRV 304 (398)
Q Consensus 241 PVL~KDFIid~~QI~eAr~~GADaVLLia--------aiL~---~~~L~---~Li~~a~~LGL~~LVE--Vht~eEl~rA 304 (398)
+|+.+|. .+..+...+..+|||+|.... +.+. ..++. .+.+.++..++.+++| +++..++.+|
T Consensus 196 ~vi~g~V-~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KA 274 (404)
T PRK06843 196 DLIAGNI-VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred cEEEEec-CCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 8888884 777888889999999998653 1111 12344 4455556679999999 6899999999
Q ss_pred hccCCCcEEeecccc
Q 015899 305 LGIEGIELIGINNRN 319 (398)
Q Consensus 305 l~l~Ga~iIGINnRd 319 (398)
+.+ ||+.+.+.+.=
T Consensus 275 Lal-GA~aVmvGs~~ 288 (404)
T PRK06843 275 IAA-GADSVMIGNLF 288 (404)
T ss_pred HHc-CCCEEEEccee
Confidence 998 99988887543
No 251
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.82 E-value=0.037 Score=55.36 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=74.6
Q ss_pred HcC-cCEEEEeccCC----------ChHHHHHHHHHHHH-cCCcEEEEcC---CHHHHHHHhcc---CCCcEE-eecc--
Q 015899 259 TKG-ADAVLLIAAVL----------PDLDIRYMTKICKL-LGLTALVEVH---DEREMDRVLGI---EGIELI-GINN-- 317 (398)
Q Consensus 259 ~~G-ADaVLLiaaiL----------~~~~L~~Li~~a~~-LGL~~LVEVh---t~eEl~rAl~l---~Ga~iI-GINn-- 317 (398)
.+| ||++=|..+.- +.+.+.++++..++ ....++|-+. +..++.++.+. .+++.| .+|.
T Consensus 116 ~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 116 ASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred hcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 467 99999988742 23557777777764 4556666655 44555544432 133322 2221
Q ss_pred ----ccCcccccC---------------hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 318 ----RNLETFEVD---------------NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 318 ----RdL~tf~vD---------------l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
.|..+-.+. ...+.+++..++. .+ +.++++|+.|||.|.+|+.++..+||++|=||+++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~-~~-~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~ 273 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQ-RL-NPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTAL 273 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHH-hc-CCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHH
Confidence 122211111 1112233322211 11 23589999999999999999999999999999999
Q ss_pred cC-CCCh
Q 015899 379 VK-QDDP 384 (398)
Q Consensus 379 mk-~~dp 384 (398)
+. .++.
T Consensus 274 ~~~gp~~ 280 (310)
T PRK02506 274 HKEGPAV 280 (310)
T ss_pred HHhChHH
Confidence 87 4543
No 252
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.81 E-value=0.041 Score=56.16 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=73.5
Q ss_pred CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc---CC----Ch-HHHHHHHHHHHHc--CCcEEEE
Q 015899 225 GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL----PD-LDIRYMTKICKLL--GLTALVE 294 (398)
Q Consensus 225 Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL----~~-~~L~~Li~~a~~L--GL~~LVE 294 (398)
.+.++|+.+|+. .++||+.|+. .++.....+..+|||+|.+.-. .+ +. .-|.++.+..+.+ .+.+++.
T Consensus 200 ~~~~~i~~l~~~-~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~ 277 (344)
T cd02922 200 LTWDDIKWLRKH-TKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD 277 (344)
T ss_pred CCHHHHHHHHHh-cCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 678999999987 8999999965 6788899999999999998543 12 22 2255555544444 3677765
Q ss_pred --cCCHHHHHHHhccCCCcEEeeccccCcccc
Q 015899 295 --VHDEREMDRVLGIEGIELIGINNRNLETFE 324 (398)
Q Consensus 295 --Vht~eEl~rAl~l~Ga~iIGINnRdL~tf~ 324 (398)
|.+-.++-+++.+ ||+.++|...-+....
T Consensus 278 GGIr~G~Dv~kalaL-GA~aV~iG~~~l~~l~ 308 (344)
T cd02922 278 GGVRRGTDVLKALCL-GAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCCCHHHHHHHHHc-CCCEEEECHHHHHHHh
Confidence 5799999999999 9999999966665554
No 253
>PTZ00333 triosephosphate isomerase; Provisional
Probab=96.80 E-value=0.019 Score=56.30 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=83.6
Q ss_pred HHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHH--------------HHHHHhccCC------
Q 015899 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDER--------------EMDRVLGIEG------ 309 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~e--------------El~rAl~l~G------ 309 (398)
..+++|++.|+++.+=. +++.+..=++.|.+.||.++++|..-. +++.+++.-.
T Consensus 84 mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~~~~~ 163 (255)
T PTZ00333 84 MLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDEAWDN 163 (255)
T ss_pred HHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHHHcce
Confidence 34667999999999832 456788888899999999999998643 4555553201
Q ss_pred -------CcEEeeccccCcccccChhhHHHHhhhhccc---cc---ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 015899 310 -------IELIGINNRNLETFEVDNSNTKKLLEGERGE---II---RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376 (398)
Q Consensus 310 -------a~iIGINnRdL~tf~vDl~~t~~L~~~i~~~---~i---~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 376 (398)
...||.+ -..+++...+....+|.. .+ ...++.++-.|+|+.-++...+...|+||+|||.
T Consensus 164 iiIAYEPvWAIGtg------~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~ 237 (255)
T PTZ00333 164 IVIAYEPVWAIGTG------KVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGG 237 (255)
T ss_pred EEEEECCHHHhCCC------CCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEeh
Confidence 1123432 122444444333333220 00 1235789999999777777888888999999999
Q ss_pred cccCCCChHHHHH
Q 015899 377 SIVKQDDPGKGIT 389 (398)
Q Consensus 377 aLmk~~dp~~~i~ 389 (398)
+-++ ++..+.++
T Consensus 238 asl~-~~f~~Ii~ 249 (255)
T PTZ00333 238 ASLK-PDFVDIIK 249 (255)
T ss_pred Hhhh-hhHHHHHH
Confidence 9998 36555443
No 254
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.79 E-value=0.021 Score=57.91 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCcEEEEecc----------------CCcCCCCHH--------HHHHHHhcCCCCcEEeccccCCHHHHH
Q 015899 200 VEIARSYEKGGAACLSILTD----------------EKYFKGSFE--------NLEAVRSAGVKCPLLCKEFIVDAWQIY 255 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd----------------~~~F~Gs~e--------dL~~Ir~a~v~lPVL~KDFIid~~QI~ 255 (398)
++-|+...++|+++|-+..- ..-|+||++ -++.||++ ++.||..|= .+++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~-~~~~v~vRi---s~~d-- 218 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV-WDGPLFVRI---SASD-- 218 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCeEEEe---cccc--
Confidence 34466677889999987543 122578875 45666775 566665431 1100
Q ss_pred HHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhh
Q 015899 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~ 335 (398)
... .-++.++..++++...+.|++ +++||.-.- . .... ..... .+.....++.+
T Consensus 219 ----~~~-------~G~~~~e~~~i~~~l~~~gvD-~i~vs~g~~-----~--~~~~-----~~~~~--~~~~~~~~ik~ 272 (337)
T PRK13523 219 ----YHP-------GGLTVQDYVQYAKWMKEQGVD-LIDVSSGAV-----V--PARI-----DVYPG--YQVPFAEHIRE 272 (337)
T ss_pred ----cCC-------CCCCHHHHHHHHHHHHHcCCC-EEEeCCCCC-----C--CCCC-----CCCcc--ccHHHHHHHHh
Confidence 000 013344555566555556764 555654310 0 0000 00011 12333344433
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHhhhcCcC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITGLFGKDI 396 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~L~~~~~ 396 (398)
. .+++|++.|+|.|++++.++.+.| +|.|.+|.+++..|+....+++.++.++
T Consensus 273 ~--------~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~~~ 326 (337)
T PRK13523 273 H--------ANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGFEI 326 (337)
T ss_pred h--------cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCCCC
Confidence 2 357899999999999999999987 9999999999999999999888877544
No 255
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.79 E-value=0.0066 Score=59.06 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=63.9
Q ss_pred CHHHHHHHhccCCCcEEeec--cccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 297 DEREMDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
|+.|+-+.+.-.|++-|=+. +++...-..+++...++.+. .++++.+.|||++.+|++++.++|+++|.|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~--------~~~pv~~gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE--------CFMPLCYGGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh--------CCCCEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence 56666555543466644443 23323345677777887764 357899999999999999999999999999
Q ss_pred cccccCCCChHHHHHhhhc
Q 015899 375 GESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 375 GeaLmk~~dp~~~i~~L~~ 393 (398)
|+++++.++..+.+.+.++
T Consensus 103 gs~~~~~~~~~~~~~~~~~ 121 (258)
T PRK01033 103 NTAALEDPDLITEAAERFG 121 (258)
T ss_pred ChHHhcCHHHHHHHHHHhC
Confidence 9999998776655555443
No 256
>TIGR03586 PseI pseudaminic acid synthase.
Probab=96.78 E-value=0.017 Score=58.65 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
|+.++..+|.++|+++||+.+.++.+.+.++.+.++ |++++=|-++|++++ .....+.+ .+.++|-
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~-~v~~~KI~S~~~~n~----~LL~~va~---------~gkPvil 139 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETAVDFLESL-DVPAYKIASFEITDL----PLIRYVAK---------TGKPIIM 139 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc-CCCEEEECCccccCH----HHHHHHHh---------cCCcEEE
Confidence 566778899999999999999999999999999998 999999999988653 33344433 4667888
Q ss_pred ecCCCCHHHHHHH----HHcCCCEEEE--ccccc
Q 015899 352 ESGLFTPDDIAYV----QEAGVKAVLV--GESIV 379 (398)
Q Consensus 352 ESGI~t~eD~~~l----~~~GadaVLV--GeaLm 379 (398)
.-|..|.+++... .+.|..-|.+ +.+-+
T Consensus 140 stG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~Y 173 (327)
T TIGR03586 140 STGIATLEEIQEAVEACREAGCKDLVLLKCTSSY 173 (327)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCC
Confidence 8888999998654 4568865666 55444
No 257
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.76 E-value=0.043 Score=55.17 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCcEEEEecc----------------CCcCCCCH--------HHHHHHHhcCC--CCcEEeccccCCHHH
Q 015899 200 VEIARSYEKGGAACLSILTD----------------EKYFKGSF--------ENLEAVRSAGV--KCPLLCKEFIVDAWQ 253 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd----------------~~~F~Gs~--------edL~~Ir~a~v--~lPVL~KDFIid~~Q 253 (398)
++-|+.+.++|+++|-+..- ..-++|++ +-++.||++ + +.||..|= .+..
T Consensus 157 ~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~-vG~d~~v~vri---~~~~ 232 (336)
T cd02932 157 VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV-WPEDKPLFVRI---SATD 232 (336)
T ss_pred HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH-cCCCceEEEEE---cccc
Confidence 44567778899999977521 11246665 455666664 4 55555431 1100
Q ss_pred HHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHH
Q 015899 254 IYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKL 333 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L 333 (398)
+. ..-++.++..++++.....|++ ++|||.-. .. .... ..+ .-..+++...++
T Consensus 233 -------~~------~~g~~~~e~~~ia~~Le~~gvd-~iev~~g~-----~~--~~~~-----~~~-~~~~~~~~~~~i 285 (336)
T cd02932 233 -------WV------EGGWDLEDSVELAKALKELGVD-LIDVSSGG-----NS--PAQK-----IPV-GPGYQVPFAERI 285 (336)
T ss_pred -------cC------CCCCCHHHHHHHHHHHHHcCCC-EEEECCCC-----CC--cccc-----cCC-CccccHHHHHHH
Confidence 00 0112344556666666677875 77876310 00 0000 000 001123444455
Q ss_pred hhhhcccccccCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHH
Q 015899 334 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGIT 389 (398)
Q Consensus 334 ~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~ 389 (398)
.+. .++++++.|||.|+++++.+.+.| +|.|-+|.+++..++....+.
T Consensus 286 r~~--------~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 286 RQE--------AGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred Hhh--------CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 443 367899999999999999999998 999999999999998766554
No 258
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.76 E-value=0.16 Score=50.69 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=99.7
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE------------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE------------------ 294 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE------------------ 294 (398)
.++|| |.-|-.-+...+.+|..+|-+.|.++++-|+-++ .++.+++||..|+.+=.|
T Consensus 71 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 150 (282)
T TIGR01858 71 YNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDA 150 (282)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchh
Confidence 57897 5777777888999999999999999999998543 678889999888777222
Q ss_pred -cCCHHHHHHHhccCCCcEEeeccccCcc-----cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC
Q 015899 295 -VHDEREMDRVLGIEGIELIGINNRNLET-----FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368 (398)
Q Consensus 295 -Vht~eEl~rAl~l~Ga~iIGINnRdL~t-----f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 368 (398)
-.+++|+.+-.+..|+|.+.+.--+.+. -..|++...++.+.+ .-..++=..||+ ..++++++.++|
T Consensus 151 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~------~iPLVlHGgSG~-~~e~~~~ai~~G 223 (282)
T TIGR01858 151 LYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV------DVPLVLHGASDV-PDEDVRRTIELG 223 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh------CCCeEEecCCCC-CHHHHHHHHHcC
Confidence 2355777776654588987665322222 356777777776542 122344467788 578899999999
Q ss_pred CCEEEEcccccC
Q 015899 369 VKAVLVGESIVK 380 (398)
Q Consensus 369 adaVLVGeaLmk 380 (398)
+.-|=|++.|..
T Consensus 224 i~KiNi~T~l~~ 235 (282)
T TIGR01858 224 ICKVNVATELKI 235 (282)
T ss_pred CeEEEeCcHHHH
Confidence 999999998864
No 259
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.73 E-value=0.034 Score=56.15 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCC----HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec----
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGS----FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---- 269 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs----~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia---- 269 (398)
+..+.+.+..++|++.|.|-+ .+|+ .+.++.+|+..-++||+. ..+.+..+...+..+|||+|.+..
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~----~~G~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDS----AHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEEC----CCCCcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 456788888889999988743 2233 456777787522488887 556888999999999999998621
Q ss_pred ----cC-----CCh-HHHHHHHHHHHHcCCcEEE--EcCCHHHHHHHhccCCCcEEeeccccC
Q 015899 270 ----AV-----LPD-LDIRYMTKICKLLGLTALV--EVHDEREMDRVLGIEGIELIGINNRNL 320 (398)
Q Consensus 270 ----ai-----L~~-~~L~~Li~~a~~LGL~~LV--EVht~eEl~rAl~l~Ga~iIGINnRdL 320 (398)
.. .+. ..+.+..+.++..++.++. -+.|..++.+|+.+ ||+.+.+..+=.
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~-GA~~VmiGt~fa 230 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAA-GADAVMLGSLLA 230 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHc-CCCEEEecchhc
Confidence 11 111 1245566666677899999 78999999999998 999988865543
No 260
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.73 E-value=0.037 Score=57.09 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcC--CHHHH-HHHhccCCCcEEeeccccCccc----ccChhhHHHHhhhhccccccc
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVH--DEREM-DRVLGIEGIELIGINNRNLETF----EVDNSNTKKLLEGERGEIIRQ 344 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVh--t~eEl-~rAl~l~Ga~iIGINnRdL~tf----~vDl~~t~~L~~~i~~~~i~~ 344 (398)
++++.+.++++..+.-++.+-+-+. +..|+ +.+.+. |+++|-+-+|..... .-|.....++++.
T Consensus 116 ~~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eA-Gad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-------- 186 (369)
T TIGR01304 116 LKPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKA-GADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-------- 186 (369)
T ss_pred cChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHC-CCCEEEEeccchhhhccCCCCCHHHHHHHHHH--------
Confidence 3455567777777776766555443 34444 555565 999999987653321 2345444555443
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
.++++|+ ||+.|.+++.+++++|||+|++|+.-
T Consensus 187 ~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 187 LDVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 3577887 99999999999999999999988633
No 261
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.73 E-value=0.008 Score=62.82 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCcEEEEcCCHHHHHHHhccCC-CcEEeeccccCcccccChhhHHHHhhhhcc--cccc-----cCCceEE
Q 015899 279 YMTKICKLLGLTALVEVHDEREMDRVLGIEG-IELIGINNRNLETFEVDNSNTKKLLEGERG--EIIR-----QKNIIVV 350 (398)
Q Consensus 279 ~Li~~a~~LGL~~LVEVht~eEl~rAl~l~G-a~iIGINnRdL~tf~vDl~~t~~L~~~i~~--~~i~-----~~~v~vV 350 (398)
++++..+..|+. |.+|++.+.++ | ++.|-+. .+- .-..|-..+..|++.+.. +.+. ...++||
T Consensus 153 ~~v~~L~~~G~i------t~~eA~~A~~~-g~aD~Ivvq-~EA-GGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipVi 223 (418)
T cd04742 153 RILKKLLAEGKI------TEEQAELARRV-PVADDITVE-ADS-GGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVG 223 (418)
T ss_pred HHHHHHHHcCCC------CHHHHHHHHhC-CCCCEEEEc-ccC-CCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEE
Confidence 445555666766 99999999998 7 5888776 321 111121122233332211 0010 1258999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015899 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 392 (398)
Q Consensus 351 AESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 392 (398)
+.|||.|++++..+..+||++|++|+.+.-+.. .-...++++
T Consensus 224 AAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L 267 (418)
T cd04742 224 AAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLL 267 (418)
T ss_pred EECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHH
Confidence 999999999999999999999999999986543 333445544
No 262
>PLN02429 triosephosphate isomerase
Probab=96.73 E-value=0.024 Score=57.32 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=82.0
Q ss_pred HHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHH--------------HHHHHhccCCCc----E
Q 015899 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDER--------------EMDRVLGIEGIE----L 312 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~e--------------El~rAl~l~Ga~----i 312 (398)
.+++|++.|+|+.+=. +++.+..=+..|.+.||.++++|.... +++.+++. -.+ +
T Consensus 143 Lkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~-v~~~~~iv 221 (315)
T PLN02429 143 LKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADA-VPSWDNIV 221 (315)
T ss_pred HHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHcc-CCcccceE
Confidence 4557999999999833 233344444458899999999998644 55555542 111 2
Q ss_pred --------EeeccccCcccccChhhHHHHhhhhc-------ccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 313 --------IGINNRNLETFEVDNSNTKKLLEGER-------GEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 313 --------IGINnRdL~tf~vDl~~t~~L~~~i~-------~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 377 (398)
||.+ . ....+...++...++ +..+ ..++.++..|+|+..++...+...|+||+|||.+
T Consensus 222 IAYEPvWAIGTG-k-----~as~e~~~~v~~~IR~~l~~~~~~~v-a~~irILYGGSV~~~N~~el~~~~diDG~LVGgA 294 (315)
T PLN02429 222 VAYEPVWAIGTG-K-----VASPQQAQEVHVAVRGWLKKNVSEEV-ASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGA 294 (315)
T ss_pred EEECCHHHhCCC-C-----CCCHHHHHHHHHHHHHHHHHHhhhhh-ccCceEEEcCccCHHHHHHHhcCCCCCEEEeecc
Confidence 2322 1 123333333322222 1111 2367899999998888888888999999999999
Q ss_pred ccCCCChHHHHHh
Q 015899 378 IVKQDDPGKGITG 390 (398)
Q Consensus 378 Lmk~~dp~~~i~~ 390 (398)
-++.++..+.+..
T Consensus 295 SL~~~~F~~Ii~~ 307 (315)
T PLN02429 295 SLKGPEFATIVNS 307 (315)
T ss_pred eecHHHHHHHHHH
Confidence 9998888777754
No 263
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.69 E-value=0.0084 Score=58.59 Aligned_cols=72 Identities=26% Similarity=0.230 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCC-C--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFK-G--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~-G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
..|+.+++.|+++|..+-++---+ | .+++|+.+++. .++||++...|-.|.|+++|.+.|||+|++..++..
T Consensus 135 ~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 135 VLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred HHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 589999999999996653433211 1 57899999986 799999999999999999999999999999999875
No 264
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.67 E-value=0.056 Score=53.61 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc---CC--
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL-- 272 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~--Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL-- 272 (398)
.++++...+.|+.+|-+..+....+ ...+.++.+|+. +++||+.|+ +.++.....+..+|||+|.+... .+
T Consensus 132 ~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~-v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~ 209 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKG-ILTPEDALRAVDAGADGIVVSNHGGRQLDG 209 (299)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-cCCCEEEee-cCCHHHHHHHHHCCCCEEEEcCCCCCCCCC
Confidence 3445555778999998865543211 235899999986 889999997 47788888899999999998542 22
Q ss_pred ChHHHHHHHHHHHHc--CCcEEEE--cCCHHHHHHHhccCCCcEEeeccccCc
Q 015899 273 PDLDIRYMTKICKLL--GLTALVE--VHDEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 273 ~~~~L~~Li~~a~~L--GL~~LVE--Vht~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
....+..+.+.++.+ .+.++.. ++|..++.+++.+ ||+.+++...-+.
T Consensus 210 g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~l-GAd~V~ig~~~l~ 261 (299)
T cd02809 210 APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALAL-GADAVLIGRPFLY 261 (299)
T ss_pred CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 223455566655555 3777665 6799999999998 9999999865443
No 265
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.66 E-value=0.072 Score=56.38 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=115.2
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-ccCCcCCCCHHHHHHHHhcCC--CCcEEeccccCCHH
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAW 252 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-Td~~~F~Gs~edL~~Ir~a~v--~lPVL~KDFIid~~ 252 (398)
.+-.+.|| .+..++-++. +.||.-|.|+ -|-+-|.=+++.-..+... + +..++.--.|-++.
T Consensus 159 Gl~~lvEv-------------h~~~El~~al-~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~-ip~~~~~vseSGI~t~~ 223 (454)
T PRK09427 159 NMGVLTEV-------------SNEEELERAI-ALGAKVIGINNRNLRDLSIDLNRTRELAPL-IPADVIVISESGIYTHA 223 (454)
T ss_pred CCcEEEEE-------------CCHHHHHHHH-hCCCCEEEEeCCCCccceECHHHHHHHHhh-CCCCcEEEEeCCCCCHH
Confidence 36778887 3556666654 4699999998 3555566777777777654 3 34456667788999
Q ss_pred HHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHH
Q 015899 253 QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKK 332 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~ 332 (398)
++...+. |||+||++.+++..++..+.++.... +.-=++-+.+.+++..|.++ |++.||+.-..-.--.++++.+.+
T Consensus 224 d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~-~~vKICGit~~eda~~a~~~-GaD~lGfIf~~~SpR~V~~~~a~~ 300 (454)
T PRK09427 224 QVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL-GENKVCGLTRPQDAKAAYDA-GAVYGGLIFVEKSPRYVSLEQAQE 300 (454)
T ss_pred HHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc-cccccCCCCCHHHHHHHHhC-CCCEEeeEeCCCCCCCCCHHHHHH
Confidence 9988876 79999999999865554443332211 22224556899999999998 999999974333444578888888
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHH-HHHcCCCEEE
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAY-VQEAGVKAVL 373 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~-l~~~GadaVL 373 (398)
|.+.++ +..|+.-==.+++++.. +.++|.|.|=
T Consensus 301 i~~~l~--------v~~VgVfv~~~~~~i~~i~~~~~lD~vQ 334 (454)
T PRK09427 301 IIAAAP--------LRYVGVFRNADIEDIVDIAKQLSLAAVQ 334 (454)
T ss_pred HHHhCC--------CCEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence 887632 22222222346777765 4577888763
No 266
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.65 E-value=0.064 Score=52.15 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=97.4
Q ss_pred ccCCCCCCCCCCCCCHHHHHHH---HHHcCCcEEEEeccCCcCCCC-----HHHHHHHHhc----CC---CCcEEeccc-
Q 015899 184 KKASPSRGILREDFDPVEIARS---YEKGGAACLSILTDEKYFKGS-----FENLEAVRSA----GV---KCPLLCKEF- 247 (398)
Q Consensus 184 KraSPSkG~i~~~~dp~~iA~a---Y~~~GA~aISVLTd~~~F~Gs-----~edL~~Ir~a----~v---~lPVL~KDF- 247 (398)
+.-|-+-|.+. .+|..++.+ ....|++-|=| ++|+++ .+.|+.+.++ .- =++++.-|+
T Consensus 53 ~pvSAtiGDlp--~~p~~~~~aa~~~a~~GvdyvKv----Gl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~ 126 (235)
T PF04476_consen 53 KPVSATIGDLP--MKPGTASLAALGAAATGVDYVKV----GLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ 126 (235)
T ss_pred CceEEEecCCC--CCchHHHHHHHHHHhcCCCEEEE----ecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh
Confidence 44455667664 344444433 34568999988 677543 2444444221 01 145567776
Q ss_pred ---cCCHHHHH-HHHHcCcCEEEEeccC---------CChHHHHHHHHHHHHcCCcE-EEEcCCHHHHHHHhccCCCcEE
Q 015899 248 ---IVDAWQIY-YARTKGADAVLLIAAV---------LPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELI 313 (398)
Q Consensus 248 ---Iid~~QI~-eAr~~GADaVLLiaai---------L~~~~L~~Li~~a~~LGL~~-LVEVht~eEl~rAl~l~Ga~iI 313 (398)
-++|+.+- .++.+|+|+++|+++. ++.++|.+|++.|++.||.+ |.--=..+++.....+ +++++
T Consensus 127 r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l-~pD~l 205 (235)
T PF04476_consen 127 RVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLKRL-GPDIL 205 (235)
T ss_pred hhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHHhc-CCCEE
Confidence 46888765 4578999999999885 46788999999999999987 5555688999999998 99999
Q ss_pred eec-----cccCcccccChhhHHHHhh
Q 015899 314 GIN-----NRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 314 GIN-----nRdL~tf~vDl~~t~~L~~ 335 (398)
|+- +.|..+-.+|.+...++.+
T Consensus 206 GfRGAvC~ggdR~~G~id~~~V~~lr~ 232 (235)
T PF04476_consen 206 GFRGAVCGGGDRRAGRIDPELVAALRA 232 (235)
T ss_pred EechhhCCCCCcCccccCHHHHHHHHH
Confidence 995 2233333566666555543
No 267
>PRK14565 triosephosphate isomerase; Provisional
Probab=96.64 E-value=0.014 Score=56.81 Aligned_cols=125 Identities=20% Similarity=0.153 Sum_probs=79.1
Q ss_pred HHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhcc----------------------
Q 015899 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGI---------------------- 307 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l---------------------- 307 (398)
..+.+|++.++++.+=. +++.+..=++.|.+.||.++++|..-.|...+-..
T Consensus 80 mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~ivIAY 159 (237)
T PRK14565 80 MLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGEFIIAY 159 (237)
T ss_pred HHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCCEEEEE
Confidence 34668999999999833 23334444477889999999999864432221110
Q ss_pred CCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHH-cCCCEEEEcccccCCCChHH
Q 015899 308 EGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE-AGVKAVLVGESIVKQDDPGK 386 (398)
Q Consensus 308 ~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~-~GadaVLVGeaLmk~~dp~~ 386 (398)
+....||.+ + ..+.+...+....++.- ..++.++..|++ +++.+..+.. .|+||+|||.+-++.++..+
T Consensus 160 EPvWAIGtG-~-----~a~~e~i~~~~~~Ir~~---~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ 229 (237)
T PRK14565 160 EPVWAIGGS-T-----IPSNDAIAEAFEIIRSY---DSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCK 229 (237)
T ss_pred CCHHHhCCC-C-----CCCHHHHHHHHHHHHHh---CCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHH
Confidence 011223422 1 23444445544443321 135788899999 6666666655 49999999999999888877
Q ss_pred HHHh
Q 015899 387 GITG 390 (398)
Q Consensus 387 ~i~~ 390 (398)
.++.
T Consensus 230 ii~~ 233 (237)
T PRK14565 230 IIQQ 233 (237)
T ss_pred HHHH
Confidence 7654
No 268
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.63 E-value=0.011 Score=58.25 Aligned_cols=77 Identities=25% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEec------------------cCCcCCCC------HHHHHHHHhcCCCCcEEeccccCCHH
Q 015899 197 FDPVEIARSYEKGGAACLSILT------------------DEKYFKGS------FENLEAVRSAGVKCPLLCKEFIVDAW 252 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLT------------------d~~~F~Gs------~edL~~Ir~a~v~lPVL~KDFIid~~ 252 (398)
.+..++|+.++++|+++|.|.. ..+.+.|. ++.+..++++ +++||+.-..|.++.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~ 247 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFE 247 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHH
Confidence 3688999999999999998741 01122232 3677788886 899999999999999
Q ss_pred HHHHHHHcCcCEEEEeccCCCh
Q 015899 253 QIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~ 274 (398)
++.++..+|||+|.+...++.+
T Consensus 248 da~~~l~~GAd~V~igr~~l~~ 269 (300)
T TIGR01037 248 DALEFLMAGASAVQVGTAVYYR 269 (300)
T ss_pred HHHHHHHcCCCceeecHHHhcC
Confidence 9999999999999998887743
No 269
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.62 E-value=0.01 Score=58.06 Aligned_cols=72 Identities=26% Similarity=0.221 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCcEEEEeccCCcC-CC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYF-KG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F-~G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
..|+.+++.|+++|..+-++--- +| .+++++.+++. .++||++...|-.|.|+++|.++|||+|++..++..
T Consensus 135 ~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 135 VLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 58999999999999664333221 11 57889999986 799999999999999999999999999999999875
No 270
>PLN02389 biotin synthase
Probab=96.62 E-value=0.2 Score=51.75 Aligned_cols=186 Identities=15% Similarity=0.224 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCC---HHHH----HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---FENL----EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs---~edL----~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
+..+.|+.+.+.|+..+.+.|.-..-.|. ++++ +.+++ ..++|...-..+++.++.+.+.+|+|.+..+..
T Consensus 120 eIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~--~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 120 DVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG--MGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc--CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeec
Confidence 44455666667899998886532111121 2333 33342 356665444568888999999999999987655
Q ss_pred C--------C---ChHHHHHHHHHHHHcCCcEE----EEc-CCHHH----HHHHhccC-CCcEEeec------cccCccc
Q 015899 271 V--------L---PDLDIRYMTKICKLLGLTAL----VEV-HDERE----MDRVLGIE-GIELIGIN------NRNLETF 323 (398)
Q Consensus 271 i--------L---~~~~L~~Li~~a~~LGL~~L----VEV-ht~eE----l~rAl~l~-Ga~iIGIN------nRdL~tf 323 (398)
- . +.++--+.++.++++|+.+. +-. .+.+| +....++. .++.|.+| +..+...
T Consensus 198 Ts~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~ 277 (379)
T PLN02389 198 TSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQ 277 (379)
T ss_pred CChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCC
Confidence 1 1 22444567788999999872 221 13333 22222331 45777776 2233322
Q ss_pred -ccChhhHHHHhhhhcccccccCCceEEEecCC-CCHHHHHHHHHcCCCEEEEccc-ccCCCChHHH
Q 015899 324 -EVDNSNTKKLLEGERGEIIRQKNIIVVGESGL-FTPDDIAYVQEAGVKAVLVGES-IVKQDDPGKG 387 (398)
Q Consensus 324 -~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI-~t~eD~~~l~~~GadaVLVGea-Lmk~~dp~~~ 387 (398)
.++.....+.+...| .+.|+..+-++.|-+ ..++....+..+||+++++|.- |+........
T Consensus 278 ~~~s~~e~lr~iAi~R--l~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~ 342 (379)
T PLN02389 278 KPVEIWEMVRMIATAR--IVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDA 342 (379)
T ss_pred CCCCHHHHHHHHHHHH--HHCCCccccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHH
Confidence 234444444333221 133555666665553 3455567888999999999998 8876654433
No 271
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.60 E-value=0.054 Score=51.73 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=95.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc--CCCCcEEe-ccc--cCCH-----HHHHHHHHcCcCEEEE
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKCPLLC-KEF--IVDA-----WQIYYARTKGADAVLL 267 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a--~v~lPVL~-KDF--Iid~-----~QI~eAr~~GADaVLL 267 (398)
+..++++...+.|..++.| ++.++..+++. +.++.|-+ =+| .-.+ .++.+|...|||.|-+
T Consensus 19 ~i~~lc~~A~~~~~~avcv---------~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDv 89 (211)
T TIGR00126 19 DIITLCAQAKTYKFAAVCV---------NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDM 89 (211)
T ss_pred HHHHHHHHHHhhCCcEEEe---------CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEe
Confidence 3344455556668888888 67788888764 12333321 133 2222 4788899999999877
Q ss_pred eccC---CCh------HHHHHHHHHHHHcCCcEEEEcC--CHHHHHHHhcc---CCCcEEeeccccCcccccChhhHHHH
Q 015899 268 IAAV---LPD------LDIRYMTKICKLLGLTALVEVH--DEREMDRVLGI---EGIELIGINNRNLETFEVDNSNTKKL 333 (398)
Q Consensus 268 iaai---L~~------~~L~~Li~~a~~LGL~~LVEVh--t~eEl~rAl~l---~Ga~iIGINnRdL~tf~vDl~~t~~L 333 (398)
..-+ +++ +++..+.+.|+..-+.+++|.. +.+|+.++.++ .|+++|=+.. .+..-...++....+
T Consensus 90 v~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsT-Gf~~~gat~~dv~~m 168 (211)
T TIGR00126 90 VINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTST-GFGAGGATVEDVRLM 168 (211)
T ss_pred ecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCC-CCCCCCCCHHHHHHH
Confidence 5543 231 1233444444322356688887 55666655433 3899986641 122222334443334
Q ss_pred hhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 334 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 334 ~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
.+.+ +..+.+.+.|||+|.+|+..+.++|++.+
T Consensus 169 ~~~v------~~~v~IKaaGGirt~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 169 RNTV------GDTIGVKASGGVRTAEDAIAMIEAGASRI 201 (211)
T ss_pred HHHh------ccCCeEEEeCCCCCHHHHHHHHHHhhHHh
Confidence 3332 23578999999999999999999998853
No 272
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=96.59 E-value=0.026 Score=54.95 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
|+.++..+|.++|+++|++.+.-+-+.+.++...++ |++.+=|-..|++. +.....+++ .+.++|-
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~-~~~~~KIaS~dl~n----~~lL~~~A~---------tgkPvIl 118 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEEL-GVPAYKIASGDLTN----LPLLEYIAK---------TGKPVIL 118 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHH-T-SEEEE-GGGTT-----HHHHHHHHT---------T-S-EEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHc-CCCEEEeccccccC----HHHHHHHHH---------hCCcEEE
Confidence 456778899999999999999999999999999998 89999888877753 333333333 4778999
Q ss_pred ecCCCCHHHHHHHH----HcCCCEEE
Q 015899 352 ESGLFTPDDIAYVQ----EAGVKAVL 373 (398)
Q Consensus 352 ESGI~t~eD~~~l~----~~GadaVL 373 (398)
..|..|.+++.++. +.|..-+.
T Consensus 119 STG~stl~EI~~Av~~~~~~~~~~l~ 144 (241)
T PF03102_consen 119 STGMSTLEEIERAVEVLREAGNEDLV 144 (241)
T ss_dssp E-TT--HHHHHHHHHHHHHHCT--EE
T ss_pred ECCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 99999999987754 34555443
No 273
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=96.57 E-value=0.01 Score=60.78 Aligned_cols=133 Identities=13% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHH--------------HHHHhc------c--
Q 015899 256 YARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDERE--------------MDRVLG------I-- 307 (398)
Q Consensus 256 eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eE--------------l~rAl~------l-- 307 (398)
..+.+||+.|+++++=. +++.+..=++.|.+.||.++++|....| ++..++ +
T Consensus 90 mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~~~~ 169 (355)
T PRK14905 90 MLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQLPH 169 (355)
T ss_pred HHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhhcCc
Confidence 34667999999999833 3455777778888999999999986444 111111 0
Q ss_pred -----CCCcEEeeccccCcccccChhhHHHHhhhhcc---cccc--cCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 308 -----EGIELIGINNRNLETFEVDNSNTKKLLEGERG---EIIR--QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 308 -----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~---~~i~--~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 377 (398)
+....||.... ..+.+...+....++. ..+. ..++.++..|+++.-.+...+...++||+|||.+
T Consensus 170 ~vIAYEPvWAIGTgg~-----~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~a 244 (355)
T PRK14905 170 LFIAYEPVWAIGEGGI-----PASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRS 244 (355)
T ss_pred eEEEECChHHhCCCCC-----CCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechh
Confidence 01112343211 1223222222211111 0010 1357899999998888888888899999999999
Q ss_pred ccCCCChHHHHHhhhc
Q 015899 378 IVKQDDPGKGITGLFG 393 (398)
Q Consensus 378 Lmk~~dp~~~i~~L~~ 393 (398)
-++++++.+.++.+.+
T Consensus 245 sl~~~~f~~Ii~~~~~ 260 (355)
T PRK14905 245 AWDAQCFHALIADALK 260 (355)
T ss_pred hccHHHHHHHHHHHHH
Confidence 9999999888877654
No 274
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.54 E-value=0.18 Score=49.51 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=114.5
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEE-----eccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcC
Q 015899 193 LREDFDPVEIARSYEKGGAACLSI-----LTDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGAD 263 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISV-----LTd~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GAD 263 (398)
+-...-..++|+...+.|+..+.= -|-+..|+| .++.|..+++. ..+|++.-= .|+.|+..+.. .+|
T Consensus 25 vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~-~Gl~~~Tev--~d~~~v~~~~e-~vd 100 (250)
T PRK13397 25 IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQE-FGLLSVSEI--MSERQLEEAYD-YLD 100 (250)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHH-cCCCEEEee--CCHHHHHHHHh-cCC
Confidence 333445678899999999887765 377888988 35566666665 799999833 69999999988 699
Q ss_pred EEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccccCccc------ccChhhHH
Q 015899 264 AVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLETF------EVDNSNTK 331 (398)
Q Consensus 264 aVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnRdL~tf------~vDl~~t~ 331 (398)
.+-+.+..+.+ ..|++.+.+.|..+++.-. +.+|+..|++. .|..-|.+-.|...+| .+|+....
T Consensus 101 ilqIgs~~~~n---~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~ 177 (250)
T PRK13397 101 VIQVGARNMQN---FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVP 177 (250)
T ss_pred EEEECcccccC---HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHH
Confidence 98888877776 4466667778999999876 88888877653 2554444444333333 45665544
Q ss_pred HHhhhhcccccccCCceEEEe-c---CCCC--HHHHHHHHHcCCCEEEEccc
Q 015899 332 KLLEGERGEIIRQKNIIVVGE-S---GLFT--PDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAE-S---GI~t--~eD~~~l~~~GadaVLVGea 377 (398)
.|.+. .+++||.- | |... +.-......+||||++|-..
T Consensus 178 ~lk~~--------~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 178 IIQQK--------TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred HHHHH--------hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 44432 24555553 2 2211 24456667889999998743
No 275
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.53 E-value=0.35 Score=48.30 Aligned_cols=146 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE------------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE------------------ 294 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE------------------ 294 (398)
.++|| |.-|-..+...+.+|..+|-+.|.++++-|+-++ .++.+++||..|+.+=.|
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 152 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccc
Confidence 58897 5677777888899999999999999999998543 678899999888766222
Q ss_pred -cCCHHHHHHHhccCCCcEEeeccc----cCc-ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC
Q 015899 295 -VHDEREMDRVLGIEGIELIGINNR----NLE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368 (398)
Q Consensus 295 -Vht~eEl~rAl~l~Ga~iIGINnR----dL~-tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 368 (398)
-.|++|+.+-.+..|+|.+.|..= .++ .-+.|++...++.+.+ +-..++=..||+. .++++++.++|
T Consensus 153 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~------~vPLVLHGgSG~~-~e~~~~ai~~G 225 (284)
T PRK09195 153 LYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV------NIPLVLHGASGLP-TKDIQQTIKLG 225 (284)
T ss_pred cCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh------CCCeEEecCCCCC-HHHHHHHHHcC
Confidence 236677777766458887766422 222 2356777777776542 1234455677884 78899999999
Q ss_pred CCEEEEcccccCCCChHHHHHhhh
Q 015899 369 VKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 369 adaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.-|=|++.+.. ...+++++.+
T Consensus 226 i~KiNi~T~l~~--a~~~~~~~~~ 247 (284)
T PRK09195 226 ICKVNVATELKI--AFSQALKNYL 247 (284)
T ss_pred CeEEEeCcHHHH--HHHHHHHHHH
Confidence 999999998873 2334444433
No 276
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.51 E-value=0.29 Score=49.70 Aligned_cols=136 Identities=10% Similarity=0.062 Sum_probs=97.9
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc-----------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV----------------- 295 (398)
+++|| |.-|-.-+...+.+|..+|-+.|..+++-|+.++ .++++++|+.+|+.+=.|+
T Consensus 84 ~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~ 163 (321)
T PRK07084 84 CPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTY 163 (321)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCccccc
Confidence 36887 6778777888999999999999999999998544 6788999999887772222
Q ss_pred CCHHHHHHHhccCCCcEEeecc----ccCcc------cccChhhHHHHhhhhcccccccCCceEEEecCCC---------
Q 015899 296 HDEREMDRVLGIEGIELIGINN----RNLET------FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--------- 356 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINn----RdL~t------f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~--------- 356 (398)
.|++|+.+..+..|+|.+.+.. -.++. -..|++...++.+.+ .++++|-=||=.
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~-------~~vPLVLHGgSg~~~~~~~~~ 236 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI-------PGFPIVLHGSSSVPQEYVKTI 236 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc-------CCCCEEEeCCCCCcHHHHHHH
Confidence 2577777777645888876652 23322 246777777766542 134455433332
Q ss_pred -------------CHHHHHHHHHcCCCEEEEcccccC
Q 015899 357 -------------TPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 357 -------------t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
..+|++++.++|+.-|=|++.|..
T Consensus 237 ~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~ 273 (321)
T PRK07084 237 NEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRL 273 (321)
T ss_pred HHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHH
Confidence 458999999999999999987754
No 277
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.51 E-value=0.22 Score=51.22 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=114.7
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEe-----ccCCcCCC-CHH---HHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC
Q 015899 191 GILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG-SFE---NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG 261 (398)
Q Consensus 191 G~i~~~~dp~~iA~aY~~~GA~aISVL-----Td~~~F~G-s~e---dL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~G 261 (398)
+.+....-..++|+...+.|+..+.-- |-|.-|+| +.+ .|..+++. ..+|++.-= .|+.++..+...
T Consensus 126 c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~-~Gl~~~t~v--~d~~~~~~l~~~- 201 (360)
T PRK12595 126 CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE-YGLAVISEI--VNPADVEVALDY- 201 (360)
T ss_pred ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH-cCCCEEEee--CCHHHHHHHHHh-
Confidence 344445556778888888887766643 44455777 334 45555554 789999844 599999999999
Q ss_pred cCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccccCccc------ccChhh
Q 015899 262 ADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNLETF------EVDNSN 329 (398)
Q Consensus 262 ADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnRdL~tf------~vDl~~ 329 (398)
+|.+-+.+..+.+ ..|++.+.+.|..+++... |.+|+..|++. .|..-|.+-.|...+| ..|+..
T Consensus 202 vd~lkI~s~~~~n---~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~ 278 (360)
T PRK12595 202 VDVIQIGARNMQN---FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISA 278 (360)
T ss_pred CCeEEECcccccC---HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHH
Confidence 9988888777776 3577777789999999975 78888887653 2443333333333332 356666
Q ss_pred HHHHhhhhcccccccCCceEEE-ecCCCC-----HHHHHHHHHcCCCEEEEcccc
Q 015899 330 TKKLLEGERGEIIRQKNIIVVG-ESGLFT-----PDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVA-ESGI~t-----~eD~~~l~~~GadaVLVGeaL 378 (398)
...|.+. .+++|+. .+-... +.-......+||||++|-.-+
T Consensus 279 i~~lk~~--------~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 279 VPILKQE--------THLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred HHHHHHH--------hCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 5555442 2466766 333222 223445678999999998887
No 278
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.51 E-value=0.02 Score=57.57 Aligned_cols=87 Identities=26% Similarity=0.300 Sum_probs=68.5
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEec--cCCcCC--CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH-cCcCEE
Q 015899 191 GILREDFDPVEIARSYEKGGAACLSILT--DEKYFK--GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAV 265 (398)
Q Consensus 191 G~i~~~~dp~~iA~aY~~~GA~aISVLT--d~~~F~--Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~-~GADaV 265 (398)
|+-....+..++|+.+++.|+++|.|-. -+..+. .+++.+..++++ +++||+.-+.|.++.++.+... .|||+|
T Consensus 143 G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 143 GWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred cccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 5444445788999999999999997763 233343 467888888886 8999999888999999999986 699999
Q ss_pred EEeccCCChHHHH
Q 015899 266 LLIAAVLPDLDIR 278 (398)
Q Consensus 266 LLiaaiL~~~~L~ 278 (398)
.+.-.++.+..+-
T Consensus 222 miGR~~l~nP~if 234 (321)
T PRK10415 222 MIGRAAQGRPWIF 234 (321)
T ss_pred EEChHhhcCChHH
Confidence 9998888665533
No 279
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.50 E-value=0.011 Score=56.64 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=51.4
Q ss_pred CHHHHHHHhccCCCcEEeecccc--CcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 297 DEREMDRVLGIEGIELIGINNRN--LETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnRd--L~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
++.|+-+.+.. .++-+=+-.+| +.....+++...++++. .++++.+.|||+|.+|++++.++|+++|+|
T Consensus 31 dp~~~a~~~~~-~~~~l~ivDldga~~g~~~n~~~i~~i~~~--------~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 31 DPVEIALRFSE-YVDKIHVVDLDGAFEGKPKNLDVVKNIIRE--------TGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CHHHHHHHHHH-hCCEEEEEECcchhcCCcchHHHHHHHHhh--------CCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 55555555543 24422221122 12233567777777664 357899999999999999999999999999
Q ss_pred ccccc
Q 015899 375 GESIV 379 (398)
Q Consensus 375 GeaLm 379 (398)
|++.+
T Consensus 102 Gtaa~ 106 (228)
T PRK04128 102 GTKAF 106 (228)
T ss_pred Cchhc
Confidence 99998
No 280
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.49 E-value=0.34 Score=48.45 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=111.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCc-CCCCHHHHHHH----Hhc-CCCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 200 VEIARSYEKGGAACLSILTDEKY-FKGSFENLEAV----RSA-GVKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~-F~Gs~edL~~I----r~a-~v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..+-++.++.++..|==++.... |.|+++.+... .+. .+++|| |.-|-.-+...+..|..+|-+.|..+++-|
T Consensus 32 ~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l 111 (286)
T PRK08610 32 QAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHS 111 (286)
T ss_pred HHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 34455555555555443332211 12334433222 222 124787 577777788889999999999999999999
Q ss_pred ChHH----HHHHHHHHHHcCCcEEEE-----------------cCCHHHHHHHhccCCCcEEeeccc----cCc-ccccC
Q 015899 273 PDLD----IRYMTKICKLLGLTALVE-----------------VHDEREMDRVLGIEGIELIGINNR----NLE-TFEVD 326 (398)
Q Consensus 273 ~~~~----L~~Li~~a~~LGL~~LVE-----------------Vht~eEl~rAl~l~Ga~iIGINnR----dL~-tf~vD 326 (398)
+.++ .++.+++|+..|+.+=.| -.+++|+.+-.+..|+|.+.+.-- .++ .-+.|
T Consensus 112 ~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld 191 (286)
T PRK08610 112 PFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLG 191 (286)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCC
Confidence 8544 678889999888776222 147778777776558887766532 222 13467
Q ss_pred hhhHHHHhhhhcccccccCCceEEE--ecCCCCHHHHHHHHHcCCCEEEEccccc
Q 015899 327 NSNTKKLLEGERGEIIRQKNIIVVG--ESGLFTPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 327 l~~t~~L~~~i~~~~i~~~~v~vVA--ESGI~t~eD~~~l~~~GadaVLVGeaLm 379 (398)
++...++.+.+ ++++|- .||+ ..++++++.++|+.-|=|++.|-
T Consensus 192 ~~~L~~I~~~~--------~vPLVLHGgSG~-~~e~~~~ai~~GI~KiNi~T~l~ 237 (286)
T PRK08610 192 FKEMEEIGLST--------GLPLVLHGGTGI-PTKDIQKAIPFGTAKINVNTENQ 237 (286)
T ss_pred HHHHHHHHHHH--------CCCEEEeCCCCC-CHHHHHHHHHCCCeEEEeccHHH
Confidence 77777765541 455554 4555 44789999999999999998874
No 281
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.48 E-value=0.0036 Score=63.47 Aligned_cols=92 Identities=22% Similarity=0.201 Sum_probs=64.0
Q ss_pred EEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe--------ccCCcCCC----CHHHHHHHHhcCCCCcEEeccc
Q 015899 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEF 247 (398)
Q Consensus 180 IAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL--------Td~~~F~G----s~edL~~Ir~a~v~lPVL~KDF 247 (398)
|.++|+..|..-+|..+..-.+-|+...++||++|-|- |......| .+.-+..++++ +++||++-..
T Consensus 131 I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-~~ipVIAdGG 209 (326)
T PRK05458 131 IQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGG 209 (326)
T ss_pred HHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-cCCCEEEeCC
Confidence 44455554443333322223467788888999998653 22222222 23347777776 7899999999
Q ss_pred cCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 248 IVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 248 Iid~~QI~eAr~~GADaVLLiaaiL 272 (398)
|.++.+|..|.++|||+|.+...++
T Consensus 210 I~~~~Di~KaLa~GA~aV~vG~~~~ 234 (326)
T PRK05458 210 IRTHGDIAKSIRFGATMVMIGSLFA 234 (326)
T ss_pred CCCHHHHHHHHHhCCCEEEechhhc
Confidence 9999999999999999999988777
No 282
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=96.48 E-value=0.28 Score=50.36 Aligned_cols=135 Identities=15% Similarity=0.154 Sum_probs=96.0
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCC-------h----HHHHHHHHHHHHcCCcEEEEc-----------
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLP-------D----LDIRYMTKICKLLGLTALVEV----------- 295 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~-------~----~~L~~Li~~a~~LGL~~LVEV----------- 295 (398)
++|| |.-|-..+..++.+|..+|-+.|.++++-|+ - ...++.+++||..|+.+=.|+
T Consensus 75 ~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~ 154 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEA 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccc
Confidence 4887 6778777888999999999999999999996 2 237788999998888774444
Q ss_pred ------------------CCHHHHHHHhccCCCcEEeec----cccCcc---cc---cChhhHHHHhhhhcccccccCCc
Q 015899 296 ------------------HDEREMDRVLGIEGIELIGIN----NRNLET---FE---VDNSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 296 ------------------ht~eEl~rAl~l~Ga~iIGIN----nRdL~t---f~---vDl~~t~~L~~~i~~~~i~~~~v 347 (398)
.|++|+.+..+..|+|.+.|. .-.++. .. .|++...++.+.+ .++
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-------~~v 227 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-------PNT 227 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-------CCC
Confidence 246666666654588877664 223322 22 6677777765542 135
Q ss_pred eEEEecCCCC----------------------HHHHHHHHHcCCCEEEEcccccC
Q 015899 348 IVVGESGLFT----------------------PDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 348 ~vVAESGI~t----------------------~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++|.=||=.. .|+++++.++|+.-|=|++.+..
T Consensus 228 PLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 228 HLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred CEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 5555444433 48899999999999999987754
No 283
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.44 E-value=0.36 Score=48.23 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=99.5
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc-----------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV----------------- 295 (398)
.++|| |.-|-.-|...|.+|..+|-+.|..+++-|+.++ .++.+++||..|+.+=.|+
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~ 152 (284)
T PRK12737 73 YNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccc
Confidence 57897 5677777788999999999999999999998543 7888999999888772222
Q ss_pred --CCHHHHHHHhccCCCcEEeecccc----Cc-ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC
Q 015899 296 --HDEREMDRVLGIEGIELIGINNRN----LE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368 (398)
Q Consensus 296 --ht~eEl~rAl~l~Ga~iIGINnRd----L~-tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 368 (398)
.|++|+.+..+..|+|.+.+..=+ ++ .-+.|++...++.+.+ +-..++=..||+ ..++++++.++|
T Consensus 153 ~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~------~iPLVlHGgSG~-~~e~~~kai~~G 225 (284)
T PRK12737 153 MYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV------SIPLVLHGASGV-PDEDVKKAISLG 225 (284)
T ss_pred cCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh------CCCEEEeCCCCC-CHHHHHHHHHCC
Confidence 256777777654588987765222 21 2346787777776542 122344456777 578899999999
Q ss_pred CCEEEEcccccC
Q 015899 369 VKAVLVGESIVK 380 (398)
Q Consensus 369 adaVLVGeaLmk 380 (398)
+.-|=|++.+-.
T Consensus 226 i~KiNi~T~l~~ 237 (284)
T PRK12737 226 ICKVNVATELKI 237 (284)
T ss_pred CeEEEeCcHHHH
Confidence 999999998753
No 284
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.41 E-value=0.016 Score=58.82 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=55.3
Q ss_pred CCCcEEeeccccCccccc-----ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 308 EGIELIGINNRNLETFEV-----DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 308 ~Ga~iIGINnRdL~tf~v-----Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
.|+++|.|.....+.... .......+.+. + ..+++||+.|||.|++++.++.+.|+|.|.+|.+++..+
T Consensus 247 ~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-----~-~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadP 320 (353)
T cd04735 247 KGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-----I-AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVDP 320 (353)
T ss_pred cCCCEEEeccCccccccccCCcchHHHHHHHHHH-----h-CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhCc
Confidence 389999887544433211 12222233222 1 125789999999999999999999999999999999999
Q ss_pred ChHHHHHh
Q 015899 383 DPGKGITG 390 (398)
Q Consensus 383 dp~~~i~~ 390 (398)
|....+++
T Consensus 321 dl~~k~~~ 328 (353)
T cd04735 321 DWVEKIKE 328 (353)
T ss_pred cHHHHHHc
Confidence 98877755
No 285
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.41 E-value=0.011 Score=56.81 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
.+..++|+.++++|+++|++- ..+.|...|+..|++..+++||+.-.-|.+..++.+....|||+|.+.-.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~---~~~~g~~ad~~~I~~i~~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD---AMDPGNHADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC---cCCCCCCCcHHHHHHhcCCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 478999999999999999983 34445445566666532589999999999999999999999999999766
No 286
>PLN02826 dihydroorotate dehydrogenase
Probab=96.40 E-value=0.057 Score=56.41 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=72.9
Q ss_pred cCcCEEEEeccCC---------ChHHHHHHHHHHHH----------cCCcEEEEcC---CHHH----HHHHhccCCCcEE
Q 015899 260 KGADAVLLIAAVL---------PDLDIRYMTKICKL----------LGLTALVEVH---DERE----MDRVLGIEGIELI 313 (398)
Q Consensus 260 ~GADaVLLiaaiL---------~~~~L~~Li~~a~~----------LGL~~LVEVh---t~eE----l~rAl~l~Ga~iI 313 (398)
..||++-|..+.- .++.+.++++..+. ....++|-+. +.++ ++.+.+. |++=|
T Consensus 215 ~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~-G~dGI 293 (409)
T PLN02826 215 QYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALAL-GIDGL 293 (409)
T ss_pred hhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHc-CCCEE
Confidence 3599999887632 23457777765542 2456777663 2223 4445564 78744
Q ss_pred eeccccC------ccccc-----------ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 015899 314 GINNRNL------ETFEV-----------DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376 (398)
Q Consensus 314 GINnRdL------~tf~v-----------Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 376 (398)
-+.|+.+ .+... -...+.+++..+... + +.++++|+-|||.|.+|+.+...+||++|-||+
T Consensus 294 i~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~-~-~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~T 371 (409)
T PLN02826 294 IISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL-T-RGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYT 371 (409)
T ss_pred EEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH-h-CCCCcEEEECCCCCHHHHHHHHHhCCCeeeecH
Confidence 4433221 11110 012233443333211 1 236899999999999999999999999999999
Q ss_pred cccCC
Q 015899 377 SIVKQ 381 (398)
Q Consensus 377 aLmk~ 381 (398)
+++..
T Consensus 372 a~~~~ 376 (409)
T PLN02826 372 AFAYE 376 (409)
T ss_pred HHHhc
Confidence 98873
No 287
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.40 E-value=0.0044 Score=66.12 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=72.0
Q ss_pred EEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-------ccCC-c-----CCCCHHHHHHHHhcCCCCcEEec
Q 015899 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-------TDEK-Y-----FKGSFENLEAVRSAGVKCPLLCK 245 (398)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-------Td~~-~-----F~Gs~edL~~Ir~a~v~lPVL~K 245 (398)
.|.++|+.-|..-+|..+..-.+-|+...++||++|.|- |-+. . .-..+.++..+.+. .++||++-
T Consensus 279 ~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIad 357 (505)
T PLN02274 279 MIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIAD 357 (505)
T ss_pred HHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-cCCeEEEe
Confidence 577888888865555556666778889999999999762 1111 0 11245567777765 78999999
Q ss_pred cccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 246 EFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 246 DFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
..|.++.+|..|.++|||+|.+...+..
T Consensus 358 GGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 358 GGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 9999999999999999999999988763
No 288
>PRK06256 biotin synthase; Validated
Probab=96.39 E-value=0.64 Score=46.46 Aligned_cols=191 Identities=15% Similarity=0.164 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCC-CHHH----HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC-
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKG-SFEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV- 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~G-s~ed----L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai- 271 (398)
+..+.++.+.+.|+.-+.+++.-....+ .+++ ++.+++. .++.+..--..+++.++...+.+|++.+.+....
T Consensus 95 eI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEts 173 (336)
T PRK06256 95 ELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRYNHNLETS 173 (336)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEEecCCccC
Confidence 3344455566778887777653221112 1223 3344443 4555554444588888989999999999874332
Q ss_pred ------C----ChHHHHHHHHHHHHcCCcE----EEEc-CCHHH----HHHHhccCCCcEEeecccc------Cccc-cc
Q 015899 272 ------L----PDLDIRYMTKICKLLGLTA----LVEV-HDERE----MDRVLGIEGIELIGINNRN------LETF-EV 325 (398)
Q Consensus 272 ------L----~~~~L~~Li~~a~~LGL~~----LVEV-ht~eE----l~rAl~l~Ga~iIGINnRd------L~tf-~v 325 (398)
+ +.++..+.++.+++.|+.+ ++-. .|.++ +..+.++ +++.+.+|... +... .+
T Consensus 174 ~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l-~~~~v~i~~l~P~pGT~l~~~~~~ 252 (336)
T PRK06256 174 RSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKEL-DADSIPINFLNPIPGTPLENHPEL 252 (336)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhC-CCCEEeecccccCCCCCCCCCCCC
Confidence 1 2244556677788888865 3322 23333 3334455 77888887332 2111 12
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhh
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~ 392 (398)
+.....+++...| .+.|...+.++.|--....|...+.=+||+++++|..|+....+...=.+++
T Consensus 253 ~~~e~l~~ia~~R--l~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~ 317 (336)
T PRK06256 253 TPLECLKTIAIFR--LINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLDMI 317 (336)
T ss_pred CHHHHHHHHHHHH--HHCCCCeeEecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHHHHHH
Confidence 3344444333322 1234444455544423344443333379999999999998887665544444
No 289
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.39 E-value=0.41 Score=47.81 Aligned_cols=136 Identities=21% Similarity=0.284 Sum_probs=98.9
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE------------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE------------------ 294 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE------------------ 294 (398)
.++|| |.-|-.-+...|.+|..+|-+.|..+.+-|+-++ .++++++||..|+.+=.|
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~ 152 (284)
T PRK12857 73 ASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREA 152 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchh
Confidence 57897 5677777778899999999999999999998543 778899999888777222
Q ss_pred -cCCHHHHHHHhccCCCcEEeeccc----cCc-ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC
Q 015899 295 -VHDEREMDRVLGIEGIELIGINNR----NLE-TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368 (398)
Q Consensus 295 -Vht~eEl~rAl~l~Ga~iIGINnR----dL~-tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G 368 (398)
-.+++|+.+..+..|+|.+.|.-= .++ .-+.|++...++.+.+ +-..++=..||+ ..++++++.++|
T Consensus 153 ~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~------~vPLVlHGgSG~-~~e~~~~ai~~G 225 (284)
T PRK12857 153 AMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV------NIPIVLHGSSGV-PDEAIRKAISLG 225 (284)
T ss_pred hcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh------CCCEEEeCCCCC-CHHHHHHHHHcC
Confidence 225667766665448887766422 222 2356788877776542 123444467777 678899999999
Q ss_pred CCEEEEcccccC
Q 015899 369 VKAVLVGESIVK 380 (398)
Q Consensus 369 adaVLVGeaLmk 380 (398)
+.-|=|++.+..
T Consensus 226 i~KiNi~T~~~~ 237 (284)
T PRK12857 226 VRKVNIDTNIRE 237 (284)
T ss_pred CeEEEeCcHHHH
Confidence 999999998754
No 290
>PLN02561 triosephosphate isomerase
Probab=96.37 E-value=0.04 Score=54.11 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=80.0
Q ss_pred HHHHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCH--------------HHHHHHhccCC---C
Q 015899 254 IYYARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDE--------------REMDRVLGIEG---I 310 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~--------------eEl~rAl~l~G---a 310 (398)
....+++||+.|+++.+=. +++.+..-++.|.+.||.++++|... ++++.++..-. .
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~~~ 160 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDWAN 160 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccccc
Confidence 3345668999999999833 45567778888999999999999875 55666654200 0
Q ss_pred cE--------EeeccccCcccccChhhHHHHhhhhcc---ccc---ccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 015899 311 EL--------IGINNRNLETFEVDNSNTKKLLEGERG---EII---RQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376 (398)
Q Consensus 311 ~i--------IGINnRdL~tf~vDl~~t~~L~~~i~~---~~i---~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 376 (398)
-+ ||.+ + ..+.+...+....+|. ..+ ...++.++-.|+|+...+...+...|+||+|||.
T Consensus 161 iiIAYEPvWAIGtG-~-----~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ 234 (253)
T PLN02561 161 VVLAYEPVWAIGTG-K-----VATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGG 234 (253)
T ss_pred eEEEECCHHHhCCC-C-----CCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEeh
Confidence 12 3422 1 1233333333222221 000 1235789999999888878888889999999999
Q ss_pred cccCC
Q 015899 377 SIVKQ 381 (398)
Q Consensus 377 aLmk~ 381 (398)
+=.+.
T Consensus 235 ASL~~ 239 (253)
T PLN02561 235 ASLKP 239 (253)
T ss_pred HhhHH
Confidence 98774
No 291
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.36 E-value=0.017 Score=60.79 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred HHHHHHHcCCcEEEEcCCHHHHHHHhccCC-CcEEeeccccCcccccChhhHHHHhhhhcc--ccc-----ccCCceEEE
Q 015899 280 MTKICKLLGLTALVEVHDEREMDRVLGIEG-IELIGINNRNLETFEVDNSNTKKLLEGERG--EII-----RQKNIIVVG 351 (398)
Q Consensus 280 Li~~a~~LGL~~LVEVht~eEl~rAl~l~G-a~iIGINnRdL~tf~vDl~~t~~L~~~i~~--~~i-----~~~~v~vVA 351 (398)
.++.....|.. |.+|++.+.++ | ++.|-+. .+- .-..|-..+..|++.+.. +.+ -+..++|++
T Consensus 159 ~v~~L~~~G~i------t~eEA~~a~~~-g~aD~Ivve-~EA-GGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViA 229 (444)
T TIGR02814 159 ILQKLLAEGRI------TREEAELARRV-PVADDICVE-ADS-GGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGA 229 (444)
T ss_pred HHHHHHHcCCC------CHHHHHHHHhC-CCCcEEEEe-ccC-CCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEE
Confidence 44555566765 99999999997 6 5777554 221 111121223344443310 001 012578999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcccccCCCC--hHHHHHhhh
Q 015899 352 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD--PGKGITGLF 392 (398)
Q Consensus 352 ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d--p~~~i~~L~ 392 (398)
.|||.|++++..+..+||++|++|+.+.-+.. .-...++++
T Consensus 230 AGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L 272 (444)
T TIGR02814 230 AGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLL 272 (444)
T ss_pred eCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHH
Confidence 99999999999999999999999999886543 233444443
No 292
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.34 E-value=0.079 Score=50.00 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=100.2
Q ss_pred HHHHHHHHcC--CcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEE--e--ccccCCH-HHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGG--AACLSILTDEKYFKGSFENLEAVRSAGVKCPLL--C--KEFIVDA-WQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~G--A~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL--~--KDFIid~-~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+.-+..++.| ++++=+-++ -|...+++.++.+|+. ..||+ . -|..-+. .++..+..+|||+|.+.+ ..+
T Consensus 12 ~a~~~~~~~~~~v~~iKig~~-l~~~~G~~~v~~l~~~--~~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~-~~g 87 (213)
T TIGR01740 12 EALDLADSLGPEIEVIKVGID-LLLDGGDKIIDELAKL--NKLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHG-VAG 87 (213)
T ss_pred HHHHHHHhcCCcCcEEEECHH-HHHhcCHHHHHHHHHc--CCCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcC-CCC
Confidence 3333444444 444334332 2445567889999885 33554 3 3432222 345567789999999865 445
Q ss_pred hHHHHHHHHHHHHcCC--cEEEEcCCHHHHH-------HHhcc----CCCcEEeeccccCcccccChhhHHHHhhhhccc
Q 015899 274 DLDIRYMTKICKLLGL--TALVEVHDEREMD-------RVLGI----EGIELIGINNRNLETFEVDNSNTKKLLEGERGE 340 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL--~~LVEVht~eEl~-------rAl~l----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~ 340 (398)
...++.+++.++..|. -++++..|..+.+ .++++ ..+-+.|+- ...+....+.+.
T Consensus 88 ~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v--------~~~~~~~~ir~~---- 155 (213)
T TIGR01740 88 SESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV--------CSAEEAKEIRKF---- 155 (213)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE--------eCHHHHHHHHHh----
Confidence 5569999999887655 6677777754432 11111 000122221 122222222221
Q ss_pred ccccCCceEEEecCCCCHH--H--------HHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 341 IIRQKNIIVVGESGLFTPD--D--------IAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 341 ~i~~~~v~vVAESGI~t~e--D--------~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
.+ + .++.-.||.-.. . +..+.++|+|-+++|.+|++++||.++++++
T Consensus 156 --~~-~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~ 212 (213)
T TIGR01740 156 --TG-D-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRI 212 (213)
T ss_pred --cC-C-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHh
Confidence 12 3 456677775331 2 2678899999999999999999999998876
No 293
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=96.33 E-value=0.069 Score=51.77 Aligned_cols=179 Identities=20% Similarity=0.194 Sum_probs=110.2
Q ss_pred HHHHHHHcCCcEEEEeccCCcCC---CCHHHHHH-----------HHhc---CCCCcEEeccccCCH-----HHHHHHHH
Q 015899 202 IARSYEKGGAACLSILTDEKYFK---GSFENLEA-----------VRSA---GVKCPLLCKEFIVDA-----WQIYYART 259 (398)
Q Consensus 202 iA~aY~~~GA~aISVLTd~~~F~---Gs~edL~~-----------Ir~a---~v~lPVL~KDFIid~-----~QI~eAr~ 259 (398)
-|++-+++|++-|-+..-.+|-. ||+.-|-. .|+. .-+.||+..=-..|| --+.+.+.
T Consensus 33 sAkaeeagg~d~i~~~nsgr~r~ag~~Sl~gLLa~~naN~~vld~a~e~lp~~r~tpv~aGv~~~DPf~~~~~~L~~L~~ 112 (276)
T COG5564 33 SAKAEEAGGIDLIYIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRQTPVLAGVNGTDPFCRMVDFLKELKT 112 (276)
T ss_pred hhhhhhcCCceEEEEecCccccccccchhhhhhhccCccHHHHHHHHhhCCccccCcceecccCCCcchhHHHHHHHHHh
Confidence 35666777777777765555432 33332222 2221 014566643333444 45666778
Q ss_pred cCcCEEE-------EeccCCC--------hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcc--
Q 015899 260 KGADAVL-------LIAAVLP--------DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLET-- 322 (398)
Q Consensus 260 ~GADaVL-------LiaaiL~--------~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~t-- 322 (398)
+|..+|. ++....- -..=-+|+..|+.++|-.+-=|.|.+|+..+.++ |+|||-.| -.+++
T Consensus 113 ~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAqa~~~a-Gadiiv~h-mg~ttgG 190 (276)
T COG5564 113 AGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQAMTKA-GADIIVAH-MGLTTGG 190 (276)
T ss_pred cCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHHHHHHc-Ccceeeec-ccccccc
Confidence 8887763 3333321 1122468889999999999999999999999998 99998554 11211
Q ss_pred -----cccChhhHHHHhhhhcc--cccccCCceEEEecC-CCCHHHHHHHHHc--CCCEEEEcccccCCCC
Q 015899 323 -----FEVDNSNTKKLLEGERG--EIIRQKNIIVVGESG-LFTPDDIAYVQEA--GVKAVLVGESIVKQDD 383 (398)
Q Consensus 323 -----f~vDl~~t~~L~~~i~~--~~i~~~~v~vVAESG-I~t~eD~~~l~~~--GadaVLVGeaLmk~~d 383 (398)
-...+....++++.+.. ..+ .++++++++|| |.+|||.++..+. ||||+.=++++=+-+-
T Consensus 191 ~Igar~~~Sl~~~vel~~~~~~aar~v-~kd~i~l~~GGPi~~p~da~yi~d~c~~~~gfygassmerlp~ 260 (276)
T COG5564 191 LIGARSALSLADCVELIELAAEAARGV-RKDVIPLCHGGPISMPEDARYILDRCPGCDGFYGASSMERLPA 260 (276)
T ss_pred eeccccccCHHHHHHHHHHHHHHHhhh-hhceeeeccCCCcCCchhhHHHHhhCCCCCcccccchhhccch
Confidence 11233334444332111 011 25778888888 8999999998876 9999988888766543
No 294
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.32 E-value=0.022 Score=56.17 Aligned_cols=76 Identities=32% Similarity=0.291 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHcCCcEEEEec-------cC-----------CcCCC------CHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015899 198 DPVEIARSYEKGGAACLSILT-------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT-------d~-----------~~F~G------s~edL~~Ir~a~v~lPVL~KDFIid~~Q 253 (398)
+..++|+.++++||++|.+.. |. +.+.| +++.+..+++. +++||+.-..|.++.+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAED 248 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHH
Confidence 788999999999999997731 11 11222 46788889886 8999999999999999
Q ss_pred HHHHHHcCcCEEEEeccCCCh
Q 015899 254 IYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~ 274 (398)
+.+...+|||+|-+...++.+
T Consensus 249 a~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 249 AIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred HHHHHHcCCCceeEcHHHhcC
Confidence 999999999999998887754
No 295
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.31 E-value=0.034 Score=52.33 Aligned_cols=80 Identities=24% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHHcCCcEEEEe----ccC--CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChH
Q 015899 202 IARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDL 275 (398)
Q Consensus 202 iA~aY~~~GA~aISVL----Td~--~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~ 275 (398)
-++...+.|++.|.+- |.. ..+...++.++.+++. +++||+.-..|.++.++.++..+|||+|++..++....
T Consensus 131 e~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~ 209 (221)
T PRK01130 131 EGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPE 209 (221)
T ss_pred HHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCH
Confidence 3577888899998651 221 2344567889999986 79999998888899999999999999999998887654
Q ss_pred H-HHHHHH
Q 015899 276 D-IRYMTK 282 (398)
Q Consensus 276 ~-L~~Li~ 282 (398)
+ .+.|.+
T Consensus 210 ~~~~~~~~ 217 (221)
T PRK01130 210 EITKWFVD 217 (221)
T ss_pred HHHHHHHH
Confidence 4 444443
No 296
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.30 E-value=0.012 Score=57.32 Aligned_cols=87 Identities=24% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCC---CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC-
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL- 272 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~---Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL- 272 (398)
.||+ +|+.+++.|++++..+--|=--+ -+..+|+.+++. .++||+..-.|=.|-+..+|.++|||+||+.+++-
T Consensus 132 ~D~v-~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~-~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 132 DDPV-LAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp S-HH-HHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHH-GSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CCHH-HHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence 4665 89999999999999986553211 167899999987 79999998899999999999999999999988864
Q ss_pred --ChHHHHHHHHHHH
Q 015899 273 --PDLDIRYMTKICK 285 (398)
Q Consensus 273 --~~~~L~~Li~~a~ 285 (398)
++-...+-.+.+-
T Consensus 210 A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 210 AKDPVAMARAFKLAV 224 (247)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 3434444444443
No 297
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.28 E-value=0.32 Score=50.04 Aligned_cols=181 Identities=19% Similarity=0.140 Sum_probs=124.0
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-----ccCCcCCC----CHHHHHHHHhcCCCCcEEeccc
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-----TDEKYFKG----SFENLEAVRSAGVKCPLLCKEF 247 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-----Td~~~F~G----s~edL~~Ir~a~v~lPVL~KDF 247 (398)
+.|||+ | ..+....-..++|+...+.|+..+.-- |-|..|+| .++.|.++++. ..+|++.-=
T Consensus 102 l~vIAG-----P--CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e-~Gl~~~tev- 172 (352)
T PRK13396 102 VVVVAG-----P--CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREA-TGLGIITEV- 172 (352)
T ss_pred EEEEEe-----C--CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHH-cCCcEEEee-
Confidence 467777 3 456655667888999999999887732 56677777 56777888876 899999654
Q ss_pred cCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccccC-
Q 015899 248 IVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNRNL- 320 (398)
Q Consensus 248 Iid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnRdL- 320 (398)
.|+.|+..+..+ +|.+-+.+..+.+- .|++.+.+.|..+++.-. |.+|+..|++. .|..-|.+-.|..
T Consensus 173 -~d~~~v~~~~~~-~d~lqIga~~~~n~---~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~r 247 (352)
T PRK13396 173 -MDAADLEKIAEV-ADVIQVGARNMQNF---SLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIR 247 (352)
T ss_pred -CCHHHHHHHHhh-CCeEEECcccccCH---HHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCc
Confidence 489999999888 89999988888773 356677778888888863 88888877654 2555455555533
Q ss_pred ------cccccChhhHHHHhhhhcccccccCCceEEEe-c---CCC--CHHHHHHHHHcCCCEEEEccccc
Q 015899 321 ------ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE-S---GLF--TPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 321 ------~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAE-S---GI~--t~eD~~~l~~~GadaVLVGeaLm 379 (398)
....+|++....|.+. .++++|.- | |.+ ++.-......+||||++|=.-..
T Consensus 248 tf~s~y~~~~~dl~ai~~lk~~--------~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~ 310 (352)
T PRK13396 248 TFDRQYTRNTLDLSVIPVLRSL--------THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN 310 (352)
T ss_pred cCcCCCCCCCcCHHHHHHHHHh--------hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 3445677665555332 23444321 1 332 34455666788999999976544
No 298
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.27 E-value=0.027 Score=54.22 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEe--ccCCcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH---cCcC
Q 015899 190 RGILREDFDPVEIARSYEKGGAACLSIL--TDEKYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART---KGAD 263 (398)
Q Consensus 190 kG~i~~~~dp~~iA~aY~~~GA~aISVL--Td~~~F~G-s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~---~GAD 263 (398)
.|+-....++.++++.+++.|+..|-+. |-.+.++| +++.++.+++. +++||+.-..|.+.-++.++.. .|||
T Consensus 139 ~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~-~~ipviasGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 139 RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR-TDAPVVASGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred CCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHhhhccCCcc
Confidence 4776677899999999999999988776 22333444 56777888886 8999999999999999988854 5999
Q ss_pred EEEEeccCCCh-HHHHHHHHHH
Q 015899 264 AVLLIAAVLPD-LDIRYMTKIC 284 (398)
Q Consensus 264 aVLLiaaiL~~-~~L~~Li~~a 284 (398)
+|++..++++. -.++++.+.+
T Consensus 218 gV~igra~~~g~~~~~~~~~~~ 239 (241)
T PRK14024 218 GAIVGKALYAGAFTLPEALAVV 239 (241)
T ss_pred EEEEeHHHHcCCCCHHHHHHHh
Confidence 99998887754 3466665543
No 299
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.22 E-value=0.48 Score=48.66 Aligned_cols=135 Identities=10% Similarity=0.081 Sum_probs=94.6
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCC-------Ch----HHHHHHHHHHHHcCCcEEEEc-----------
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVL-------PD----LDIRYMTKICKLLGLTALVEV----------- 295 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL-------~~----~~L~~Li~~a~~LGL~~LVEV----------- 295 (398)
++|| |.-|-..+..++.+|..+|-+.|..+++.| +- ...++++++|+..|+.+=.|+
T Consensus 73 ~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~ 152 (347)
T TIGR01521 73 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMG 152 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccccccccc
Confidence 4897 677877888999999999999999999988 42 237788999998777662222
Q ss_pred ------------------CCHHHHHHHhccCCCcEEeec----cccCcc---cc---cChhhHHHHhhhhcccccccCCc
Q 015899 296 ------------------HDEREMDRVLGIEGIELIGIN----NRNLET---FE---VDNSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 296 ------------------ht~eEl~rAl~l~Ga~iIGIN----nRdL~t---f~---vDl~~t~~L~~~i~~~~i~~~~v 347 (398)
.+++|+.+-.+..|+|.+.|. .-.++. .. .|++...++.+. + .++
T Consensus 153 g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~-----v--~~v 225 (347)
T TIGR01521 153 EAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHAR-----L--PDT 225 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHcc-----C--CCC
Confidence 255666666654488877664 223322 12 677776666554 2 145
Q ss_pred eEEEecCCCC----------------------HHHHHHHHHcCCCEEEEcccccC
Q 015899 348 IVVGESGLFT----------------------PDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 348 ~vVAESGI~t----------------------~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++|.=||=.. .++++++.++|+.-|=|++.|-.
T Consensus 226 PLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 226 HLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred CEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 5555444433 48999999999999999988754
No 300
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.22 E-value=0.02 Score=56.73 Aligned_cols=75 Identities=25% Similarity=0.211 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHcCCcEEEEe-----------------------ccCCcCCCC------HHHHHHHHhcCC--CCcEEecc
Q 015899 198 DPVEIARSYEKGGAACLSIL-----------------------TDEKYFKGS------FENLEAVRSAGV--KCPLLCKE 246 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-----------------------Td~~~F~Gs------~edL~~Ir~a~v--~lPVL~KD 246 (398)
+..++|+..+++||++|.+. |..+.|.|. ++.+..+++. + ++||+.-.
T Consensus 181 ~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~-~~~~ipIig~G 259 (299)
T cd02940 181 DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA-PEPGLPISGIG 259 (299)
T ss_pred hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh-cCCCCcEEEEC
Confidence 78899999999999999842 112234442 6788888886 7 89999988
Q ss_pred ccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 247 FIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.|.+..++++...+|||+|.+..+++-
T Consensus 260 GI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 260 GIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred CCCCHHHHHHHHHcCCChheEceeecc
Confidence 999999999999999999999888663
No 301
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.22 E-value=0.083 Score=53.21 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=81.5
Q ss_pred HHHHcCcCEEEEeccC-------CCh--------------HH---HHHHHHHHHH-cC--CcEEEEcC---------CHH
Q 015899 256 YARTKGADAVLLIAAV-------LPD--------------LD---IRYMTKICKL-LG--LTALVEVH---------DER 299 (398)
Q Consensus 256 eAr~~GADaVLLiaai-------L~~--------------~~---L~~Li~~a~~-LG--L~~LVEVh---------t~e 299 (398)
.|..+|.|+|=|.++- |++ .. +.+.++..++ +| +.+.+.++ +.+
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence 5567899999876552 221 01 3345555543 54 66777775 555
Q ss_pred HHHHH---hccCCCcEEeeccccCcccc----cC----------hhhHHHHhhhhcccccccCCceEEEecCCCCHHHHH
Q 015899 300 EMDRV---LGIEGIELIGINNRNLETFE----VD----------NSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 362 (398)
Q Consensus 300 El~rA---l~l~Ga~iIGINnRdL~tf~----vD----------l~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~ 362 (398)
|.... ++-.|+++|-|..+...... .+ .+...++.+. .+++|++.++|.+++++.
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~--------v~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV--------TKTPLMVTGGFRTRAAME 308 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH--------cCCCEEEeCCCCCHHHHH
Confidence 54222 22137888877655432211 01 1222333332 368999999999999999
Q ss_pred HHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015899 363 YVQEAG-VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 363 ~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 390 (398)
++.+.| +|.|.+|.+++..|+..+.+++
T Consensus 309 ~~l~~g~aD~V~lgR~~iadP~~~~k~~~ 337 (338)
T cd04733 309 QALASGAVDGIGLARPLALEPDLPNKLLA 337 (338)
T ss_pred HHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence 999886 8999999999999998877653
No 302
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.20 E-value=0.54 Score=48.28 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCC-------ChH----HHHHHHHHHHHcCCcEEEEc-----------
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVL-------PDL----DIRYMTKICKLLGLTALVEV----------- 295 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL-------~~~----~L~~Li~~a~~LGL~~LVEV----------- 295 (398)
++|| |.-|-.-+..++.+|..+|-+.|.++++-| +-+ ..++.+++|+..|+.+=.|+
T Consensus 75 ~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~ 154 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMG 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccc
Confidence 4887 577777788899999999999999999988 432 37788999998888774333
Q ss_pred ------------------CCHHHHHHHhccCCCcEEeec----cccCcc---cc---cChhhHHHHhhhhcccccccCCc
Q 015899 296 ------------------HDEREMDRVLGIEGIELIGIN----NRNLET---FE---VDNSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 296 ------------------ht~eEl~rAl~l~Ga~iIGIN----nRdL~t---f~---vDl~~t~~L~~~i~~~~i~~~~v 347 (398)
.+++|+.+-.+..|+|.+.|. .-.++. .. .|++...++.+.+ .++
T Consensus 155 g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v-------~~v 227 (347)
T PRK09196 155 GEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL-------PNT 227 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC-------CCC
Confidence 256777776654588877664 223332 22 6777777776542 134
Q ss_pred eEE--EecCCC--------------------CHHHHHHHHHcCCCEEEEcccccC
Q 015899 348 IVV--GESGLF--------------------TPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 348 ~vV--AESGI~--------------------t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++| ..||+. ..++++++.++|+.-|=|++.|-.
T Consensus 228 PLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 228 HLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 444 455552 568899999999999999988754
No 303
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.20 E-value=0.0058 Score=64.87 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=76.2
Q ss_pred EEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEE-------EeccCCcCCCCHHHHHHHHhc-----CCCCcEEecc
Q 015899 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLS-------ILTDEKYFKGSFENLEAVRSA-----GVKCPLLCKE 246 (398)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aIS-------VLTd~~~F~Gs~edL~~Ir~a-----~v~lPVL~KD 246 (398)
.|.++|+.-|..-+|..+..-.+.|+...++||++|. ++|-..+-+-+.-++..|.+. ..++||++-+
T Consensus 258 ~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 258 ALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred HHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecC
Confidence 4778899989887788788888999999999999997 345556655555666666321 2479999999
Q ss_pred ccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 247 FIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.|-++.++..|.++|||+|.++..++
T Consensus 338 gi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 338 GVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred CCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 99999999999999999999988766
No 304
>PRK02227 hypothetical protein; Provisional
Probab=96.19 E-value=0.1 Score=50.88 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=96.4
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHH---HcCCcEEEEeccCCcCCCCH-----HHHHHH----HhcCCC---CcEEecccc-
Q 015899 185 KASPSRGILREDFDPVEIARSYE---KGGAACLSILTDEKYFKGSF-----ENLEAV----RSAGVK---CPLLCKEFI- 248 (398)
Q Consensus 185 raSPSkG~i~~~~dp~~iA~aY~---~~GA~aISVLTd~~~F~Gs~-----edL~~I----r~a~v~---lPVL~KDFI- 248 (398)
.-|.+-|.+ +.+|..++.+.. ..|++-|=| ++|+++- +-+..+ +....+ ++++.-|+-
T Consensus 54 pvSAtiGD~--p~~p~~~~~aa~~~a~~GvDyVKv----Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r 127 (238)
T PRK02227 54 PVSATIGDV--PYKPGTISLAALGAAATGADYVKV----GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHR 127 (238)
T ss_pred CceeeccCC--CCCchHHHHHHHHHHhhCCCEEEE----cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEeccccc
Confidence 335555665 345555555444 468888888 5665443 223332 211112 345555542
Q ss_pred ---CCHHHH-HHHHHcCcCEEEEeccC---------CChHHHHHHHHHHHHcCCcE-EEEcCCHHHHHHHhccCCCcEEe
Q 015899 249 ---VDAWQI-YYARTKGADAVLLIAAV---------LPDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIG 314 (398)
Q Consensus 249 ---id~~QI-~eAr~~GADaVLLiaai---------L~~~~L~~Li~~a~~LGL~~-LVEVht~eEl~rAl~l~Ga~iIG 314 (398)
++++.+ .-++.+|+|+++|+++. ++.++|.+|++.|++.||.+ |.--=..+++.....+ +++++|
T Consensus 128 ~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L~~l-~pD~lG 206 (238)
T PRK02227 128 VGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPALKRL-GPDILG 206 (238)
T ss_pred ccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHHHhc-CCCEEE
Confidence 466654 45678999999999985 46788999999999999986 5555578889888998 999999
Q ss_pred ec-----cccCcccccChhhHHHHhhh
Q 015899 315 IN-----NRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 315 IN-----nRdL~tf~vDl~~t~~L~~~ 336 (398)
+- +.| .+-.+|.+...++...
T Consensus 207 fRgavC~g~d-R~~~id~~~V~~~~~~ 232 (238)
T PRK02227 207 VRGAVCGGGD-RTGRIDPELVAELREA 232 (238)
T ss_pred echhccCCCC-cccccCHHHHHHHHHH
Confidence 95 333 4557787777777654
No 305
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.16 E-value=0.1 Score=52.88 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=40.7
Q ss_pred CceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 390 (398)
+++|++-|||.|++++.++.+.| +|.|.+|.+++..|+....+++
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 57899999999999999999876 9999999999999998777765
No 306
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.14 E-value=0.043 Score=54.79 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEe--ccCCcCCC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHH-HcCcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVL--Td~~~F~G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr-~~GADaVLLiaai 271 (398)
.+..++|+.++++|+++|.|- |-...+.| .++.+..|++. +++||+.-..|.++.++.++. ..|||+|.+.-.+
T Consensus 147 ~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~ 225 (319)
T TIGR00737 147 INAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225 (319)
T ss_pred chHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhh
Confidence 457899999999999999884 22233433 56777888886 899999999999999999998 6899999998888
Q ss_pred CChHHH
Q 015899 272 LPDLDI 277 (398)
Q Consensus 272 L~~~~L 277 (398)
+.+..+
T Consensus 226 l~~P~l 231 (319)
T TIGR00737 226 LGNPWL 231 (319)
T ss_pred hhCChH
Confidence 866553
No 307
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.13 E-value=0.03 Score=53.34 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCc-CCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEE
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL 267 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~-F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL 267 (398)
.+..++|.+.+..|+..|.+-.-.++ +.++.+.++.+|+. +++|+.....|.++.|+.++..+|||.|.+
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~-~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKA-SGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHh-hCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 34556677778889999999663444 44889999999997 899999999999999999999999999976
No 308
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.13 E-value=0.045 Score=56.60 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHHHHcC--CcEEEEc-C--CHHHHHHHhccCCCcEEeeccccCccc--------ccChhhHHHH---hh
Q 015899 272 LPDLDIRYMTKICKLLG--LTALVEV-H--DEREMDRVLGIEGIELIGINNRNLETF--------EVDNSNTKKL---LE 335 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LG--L~~LVEV-h--t~eEl~rAl~l~Ga~iIGINnRdL~tf--------~vDl~~t~~L---~~ 335 (398)
-+.+++.++++..++.. ..+.+-. . +.+++.++++..|+|.|-|.+..-.|- ...+.+..-| ..
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~ 275 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQ 275 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHH
Confidence 35567888888888753 5554333 2 688999999874499998887753331 1112121111 11
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.+....+ ..++.+|+.|||.|..|+.++..+|||+|-+|+.+|.+
T Consensus 276 ~~~~~~~-~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 276 ALVKNGL-RDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHcCC-CCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 1100001 13589999999999999999999999999999999954
No 309
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.12 E-value=0.036 Score=54.37 Aligned_cols=76 Identities=32% Similarity=0.313 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHcCCcEEEEe-c------cC-----------CcCCC------CHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015899 198 DPVEIARSYEKGGAACLSIL-T------DE-----------KYFKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-T------d~-----------~~F~G------s~edL~~Ir~a~v~lPVL~KDFIid~~Q 253 (398)
+..++|+..+++||++|.+. | |. ..+.| .++.+..+++. +++||+.-..|.++.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~d 245 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGED 245 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHH
Confidence 68899999999999999763 1 11 12233 24788888886 8999999999999999
Q ss_pred HHHHHHcCcCEEEEeccCCCh
Q 015899 254 IYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL~~ 274 (398)
+.++..+|||+|-+...++.+
T Consensus 246 a~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred HHHHHHcCCCEEEEchhhhcC
Confidence 999999999999998887754
No 310
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.12 E-value=0.036 Score=55.10 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHc-C--CcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEe
Q 015899 276 DIRYMTKICKLL-G--LTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGE 352 (398)
Q Consensus 276 ~L~~Li~~a~~L-G--L~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAE 352 (398)
.+.+.++.++.. + ..+=|||.|++|+++|+++ |||+|-.-|-.. +...+.++.+ + + ...+.+=+.
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a-gaDiImLDNm~~-------e~~~~av~~l-~--~-~~~~~lEaS 240 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA-GADIIMLDNMSP-------EELKEAVKLL-G--L-AGRALLEAS 240 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc-CCCEEEecCCCH-------HHHHHHHHHh-c--c-CCceEEEEe
Confidence 467788888864 3 3367999999999999997 999999876443 3344444331 0 1 245777788
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 353 SGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 353 SGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
||| |++.+......|+|-+-+|---
T Consensus 241 GgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 241 GGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred CCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 888 9999999999999999998433
No 311
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.11 E-value=0.028 Score=57.94 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHHHHcC--CcE---EEEcCCHHHHHH-HhccCCCcEEeeccccCcc----------cccChh----hH
Q 015899 271 VLPDLDIRYMTKICKLLG--LTA---LVEVHDEREMDR-VLGIEGIELIGINNRNLET----------FEVDNS----NT 330 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LG--L~~---LVEVht~eEl~r-Al~l~Ga~iIGINnRdL~t----------f~vDl~----~t 330 (398)
+-+.++|.++++..++++ ..+ |+=.+..+++.. +.++ ++|+|-|...+--| +..-+. .+
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~a-g~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a 262 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKA-GADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARA 262 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHT-T-SEEEEE-TT---SSEECCHHHHC---HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhc-cCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHH
Confidence 346788999999988765 444 444567776666 6776 99999887554333 111111 12
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 379 (398)
.+.+. ...+ ...+.+++.||+.|+.|+.++..+|||+|-+|++.|
T Consensus 263 ~~~L~---~~gl-r~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l 307 (368)
T PF01645_consen 263 HQALV---KNGL-RDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL 307 (368)
T ss_dssp HHHHH---CTT--CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred HHHHH---HcCC-CCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence 22221 1122 245889999999999999999999999999999876
No 312
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.09 E-value=0.027 Score=56.65 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHcCCcEEEEec--cCCcCCC---CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHH-HcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSILT--DEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYAR-TKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT--d~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr-~~GADaVLLiaai 271 (398)
+..++|+.++++|+++|.|-. -.+.|.| +++.+..++++ +++||+.-+-|.++.++.+.. ..|||+|.+.-.+
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~ 227 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGA 227 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHh
Confidence 467999999999999999963 3344555 47888999987 899999988899999999886 5799999999888
Q ss_pred CChHHHHHHH
Q 015899 272 LPDLDIRYMT 281 (398)
Q Consensus 272 L~~~~L~~Li 281 (398)
|.+..+-.-+
T Consensus 228 l~nP~lf~~~ 237 (312)
T PRK10550 228 LNIPNLSRVV 237 (312)
T ss_pred HhCcHHHHHh
Confidence 8776654433
No 313
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=96.08 E-value=0.41 Score=46.64 Aligned_cols=185 Identities=17% Similarity=0.128 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCC--HHHHHHHHhc--CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGS--FENLEAVRSA--GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs--~edL~~Ir~a--~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+..+.++.+.+.|+..+.+.+.-...... .+++..+++. ..++++...-..+++.++...+.+|+|.|.+... .+
T Consensus 66 ei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~ 144 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TS 144 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CC
Confidence 45555666677898887766522111111 3455555431 1467765444467888999999999999988766 33
Q ss_pred h------------HHHHHHHHHHHHcCCcE----EEEc-CCHHHHHH----HhccCCCcEEeec------cccCcccc-c
Q 015899 274 D------------LDIRYMTKICKLLGLTA----LVEV-HDEREMDR----VLGIEGIELIGIN------NRNLETFE-V 325 (398)
Q Consensus 274 ~------------~~L~~Li~~a~~LGL~~----LVEV-ht~eEl~r----Al~l~Ga~iIGIN------nRdL~tf~-v 325 (398)
+ ++..+.++.+++.|+.+ ++-. .+.+++.. +.++ +++.+.++ +..+..+. +
T Consensus 145 ~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l-~~~~i~l~~l~p~~gT~l~~~~~~ 223 (296)
T TIGR00433 145 QEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANL-PPESVPINFLVKIKGTPLADNKEL 223 (296)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhC-CCCEEEeeeeEEcCCCccCCCCCC
Confidence 2 22334566777888886 3422 24444433 3345 77767655 22333332 3
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCC-CCHHHHHH-HHHcCCCEEEEcccccCCCChHH
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGL-FTPDDIAY-VQEAGVKAVLVGESIVKQDDPGK 386 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI-~t~eD~~~-l~~~GadaVLVGeaLmk~~dp~~ 386 (398)
+.+...+++...+- .+ |...+.++.+-- .-.+.... +..+|++++++|.-|+....+..
T Consensus 224 s~~~~~~~ia~~r~-~l-p~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~g~~~~ 284 (296)
T TIGR00433 224 SADDALKTIALARI-IM-PKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEE 284 (296)
T ss_pred CHHHHHHHHHHHHH-HC-CcceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCCCCCCc
Confidence 44444444433221 12 333232222221 11233333 78899999999999998776544
No 314
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.04 E-value=0.068 Score=50.65 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=68.2
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEecccc--CCHH--
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFI--VDAW-- 252 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFI--id~~-- 252 (398)
+.+|.|.-..-+--|...........++.+.+.||+.|-+ +|.++++.++.+.+. +.+||+.-..| .++-
T Consensus 123 ~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~-----~~~~~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~ 196 (235)
T cd00958 123 LPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKT-----KYTGDAESFKEVVEG-CPVPVVIAGGPKKDSEEEF 196 (235)
T ss_pred CCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEe-----cCCCCHHHHHHHHhc-CCCCEEEeCCCCCCCHHHH
Confidence 5577787432111111111122333366788999999998 467789999999886 89999875543 4554
Q ss_pred --HHHHHHHcCcCEEEEeccCCChHHHHHHHHHH
Q 015899 253 --QIYYARTKGADAVLLIAAVLPDLDIRYMTKIC 284 (398)
Q Consensus 253 --QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a 284 (398)
++.+++.+||++|+.+..++..++-..+++..
T Consensus 197 l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~ 230 (235)
T cd00958 197 LKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAI 230 (235)
T ss_pred HHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHH
Confidence 48899999999999999988655545544443
No 315
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.02 E-value=0.068 Score=54.06 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcC--CcEEEEeccC--------CcCCCCHHHHHHHHhcCCCCcEEec--cccCCHHHHHHHHHcCcCEEE
Q 015899 199 PVEIARSYEKGG--AACLSILTDE--------KYFKGSFENLEAVRSAGVKCPLLCK--EFIVDAWQIYYARTKGADAVL 266 (398)
Q Consensus 199 p~~iA~aY~~~G--A~aISVLTd~--------~~F~Gs~edL~~Ir~a~v~lPVL~K--DFIid~~QI~eAr~~GADaVL 266 (398)
+.++.++.+..+ |-.|++..-+ ..|.+-++.++.+|+. +++||..| .|..+...+..+..+|+|+|.
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~ 208 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKLLADAGVSAID 208 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 555555544444 4555553211 1345555889999986 89999998 455677777778889999999
Q ss_pred EeccCCC-----------------------hHHHHHHHHHHH-HcCCcEEEE--cCCHHHHHHHhccCCCcEEeeccccC
Q 015899 267 LIAAVLP-----------------------DLDIRYMTKICK-LLGLTALVE--VHDEREMDRVLGIEGIELIGINNRNL 320 (398)
Q Consensus 267 LiaaiL~-----------------------~~~L~~Li~~a~-~LGL~~LVE--Vht~eEl~rAl~l~Ga~iIGINnRdL 320 (398)
+...-=+ -.....+.+... ..++.+++- ++|..++.+++.+ ||+.+++..-=|
T Consensus 209 Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLal-GAd~V~igr~~L 287 (333)
T TIGR02151 209 VAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIAL-GADAVGMARPFL 287 (333)
T ss_pred ECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHHh-CCCeehhhHHHH
Confidence 9653100 001223333222 235555543 5799999999998 999999974333
Q ss_pred cccc-cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHH
Q 015899 321 ETFE-VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 363 (398)
Q Consensus 321 ~tf~-vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~ 363 (398)
...- -+.+...+.+..+..+ + ......-|..+.+|+..
T Consensus 288 ~~~~~~g~~~v~~~i~~~~~e-L----~~~m~~~G~~~i~el~~ 326 (333)
T TIGR02151 288 KAALDEGEEAVIEEIELIIEE-L----KVAMFLTGAKTIAELKK 326 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHHH-H----HHHHHHhCCCCHHHHcc
Confidence 2221 2333333333221100 1 12345567777777653
No 316
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.97 E-value=0.023 Score=52.41 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=67.4
Q ss_pred cCCCCHHHHHHHHhcCCCCc-EEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---C
Q 015899 222 YFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---D 297 (398)
Q Consensus 222 ~F~Gs~edL~~Ir~a~v~lP-VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t 297 (398)
+|+|-.+-++.+|+.....+ |+.-- -+..|+.+|..+|+|.|.|+- .+++++++.++..+..+-.+.+|++ |
T Consensus 62 ~~g~i~~av~~~~~~~~~~~~I~VEv--~~~ee~~ea~~~g~d~I~lD~--~~~~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 62 FFGGIEEAVKAARQAAPEKKKIEVEV--ENLEEAEEALEAGADIIMLDN--MSPEDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHSSHHHHHHHHHHHSTTTSEEEEEE--SSHHHHHHHHHTT-SEEEEES---CHHHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HhCCHHHHHHHHHHhCCCCceEEEEc--CCHHHHHHHHHhCCCEEEecC--cCHHHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 35444456666776533443 65433 256799999999999999987 6888999999999988888999996 7
Q ss_pred HHHHHHHhccCCCcEEeecc
Q 015899 298 EREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 298 ~eEl~rAl~l~Ga~iIGINn 317 (398)
++.+....+. |+++|++..
T Consensus 138 ~~ni~~ya~~-gvD~isvg~ 156 (169)
T PF01729_consen 138 LENIAEYAKT-GVDVISVGS 156 (169)
T ss_dssp TTTHHHHHHT-T-SEEEECH
T ss_pred HHHHHHHHhc-CCCEEEcCh
Confidence 7777777786 999999874
No 317
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.94 E-value=0.038 Score=53.23 Aligned_cols=90 Identities=18% Similarity=0.080 Sum_probs=63.4
Q ss_pred CCHHHHHHHhcc-CCCcEEeeccccC--cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEE
Q 015899 296 HDEREMDRVLGI-EGIELIGINNRNL--ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAV 372 (398)
Q Consensus 296 ht~eEl~rAl~l-~Ga~iIGINnRdL--~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaV 372 (398)
.|+.|+.+.... .||+-+=|-.-|- .....+++...++++. .++++-..|||++.||++++.++||+.|
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~--------~~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRL--------TTKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhh--------cCCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 466666665543 4677665531111 1223456666666654 3578999999999999999999999999
Q ss_pred EEcccccCCCChHHHHHhhhc
Q 015899 373 LVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 373 LVGeaLmk~~dp~~~i~~L~~ 393 (398)
+||++..+.++..+.+.+-++
T Consensus 103 vigt~a~~~~~~l~~~~~~fg 123 (234)
T PRK13587 103 IVGTKGIQDTDWLKEMAHTFP 123 (234)
T ss_pred EECchHhcCHHHHHHHHHHcC
Confidence 999999998876666666554
No 318
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=95.94 E-value=0.048 Score=53.14 Aligned_cols=89 Identities=26% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCC---CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFK---GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~---Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
..||+ +|+.+++.|++++.=|.-|=--+ -+..+|+.|++. .++||+..-.|=.|-+..+|.+.|+|+||+.+++-
T Consensus 138 ~dD~v-~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~-a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA 215 (262)
T COG2022 138 TDDPV-LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEE-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 215 (262)
T ss_pred CCCHH-HHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHh-CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence 45665 89999999999998775553111 267899999987 79999998899999999999999999999998875
Q ss_pred C---hHHHHHHHHHHHH
Q 015899 273 P---DLDIRYMTKICKL 286 (398)
Q Consensus 273 ~---~~~L~~Li~~a~~ 286 (398)
. +-.+.+-.+.|-+
T Consensus 216 ~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 216 RAKDPVAMARAFALAVE 232 (262)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 3 3334444444443
No 319
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.91 E-value=0.049 Score=55.62 Aligned_cols=127 Identities=20% Similarity=0.371 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHcCcCEEEEeccCCCh-H---------HHHHHHHHHHHcCCcEEEEc--CCH---------------H--
Q 015899 249 VDAWQIYYARTKGADAVLLIAAVLPD-L---------DIRYMTKICKLLGLTALVEV--HDE---------------R-- 299 (398)
Q Consensus 249 id~~QI~eAr~~GADaVLLiaaiL~~-~---------~L~~Li~~a~~LGL~~LVEV--ht~---------------e-- 299 (398)
+..+.+.+++.+|||+|-+..-.-++ . .+.++.+.|+..||..|+|+ ... +
T Consensus 107 ~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V 186 (340)
T PRK12858 107 LDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKV 186 (340)
T ss_pred cccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHH
Confidence 34455889999999999887665543 1 37788888999999999993 221 1
Q ss_pred -H-HHHHh--ccCCCcEEeeccc-cC---ccccc-----Ch----hhHHHHhhhhcccccccCCceEEEecCCCCHH---
Q 015899 300 -E-MDRVL--GIEGIELIGINNR-NL---ETFEV-----DN----SNTKKLLEGERGEIIRQKNIIVVGESGLFTPD--- 359 (398)
Q Consensus 300 -E-l~rAl--~l~Ga~iIGINnR-dL---~tf~v-----Dl----~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~e--- 359 (398)
+ ++.+. ++ |+|++=+.-- |. ..|.. +- +...++.... + -.++|..||. +.+
T Consensus 187 ~~a~r~~~~~el-GaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~------~-~P~vvlsgG~-~~~~f~ 257 (340)
T PRK12858 187 IKTMEEFSKPRY-GVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT------D-LPFIFLSAGV-SPELFR 257 (340)
T ss_pred HHHHHHHhhhcc-CCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC------C-CCEEEECCCC-CHHHHH
Confidence 1 22223 26 8888877521 11 11110 11 2233333321 1 1256678887 544
Q ss_pred -HHHHHHHcCC--CEEEEcccccCCCCh
Q 015899 360 -DIAYVQEAGV--KAVLVGESIVKQDDP 384 (398)
Q Consensus 360 -D~~~l~~~Ga--daVLVGeaLmk~~dp 384 (398)
.++..+++|+ .||++|.++.+...+
T Consensus 258 ~~l~~A~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 258 RTLEFACEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence 4566778899 999999998876544
No 320
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=95.90 E-value=0.058 Score=54.79 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCC-C--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFK-G--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~-G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
..|+++++.|+.++.-|+++=--+ | ++++|+.+++. .++||++.-.|-.+.++++|.+.|||+||+..++..
T Consensus 209 ~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 209 IAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 578999999998887765553210 0 78999999987 799999999999999999999999999999988863
No 321
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.88 E-value=1 Score=45.66 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=96.6
Q ss_pred CCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc------------------
Q 015899 239 KCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV------------------ 295 (398)
Q Consensus 239 ~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV------------------ 295 (398)
++|| |.=|-..+...+.+|..+|-+.|.++++-|+-++ .++.+++||..|+.+=.|+
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~ 153 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAV 153 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccc
Confidence 4897 6778878888899999999999999999997543 7788999998887762222
Q ss_pred -CCHHHHHHHhccCCCcEEeec----cccCc---ccccChhhHHHHhhhhcccccccCCceEEEecCCCCHH--------
Q 015899 296 -HDEREMDRVLGIEGIELIGIN----NRNLE---TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD-------- 359 (398)
Q Consensus 296 -ht~eEl~rAl~l~Ga~iIGIN----nRdL~---tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~e-------- 359 (398)
.|++|+.+-.+..|+|.+.|. .-.++ .-..|++...++.+. -++++|.=||=..|+
T Consensus 154 ~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~--------~~iPLVLHGgSGip~e~~~~~~~ 225 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRL--------TNIPLVLHGASAIPDDVRKSYLD 225 (307)
T ss_pred CCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHH--------hCCCEEEeCCCCCchHHhhhhhh
Confidence 235666666654488877664 22332 235678777777554 145566555444444
Q ss_pred --------------HHHHHHHcCCCEEEEcccccC
Q 015899 360 --------------DIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 360 --------------D~~~l~~~GadaVLVGeaLmk 380 (398)
+++++.++|+.-|=|++.|..
T Consensus 226 ~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 226 AGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred hccccccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence 899999999999999988754
No 322
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.83 E-value=0.048 Score=51.57 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCC------HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs------~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
.+=+....+.|+++|+- |..+|-..+ ++.++.+++. ++||++-+-|-+|.|..++..+||++|..+.++-.
T Consensus 102 ~ee~~~A~~~G~D~I~T-TLsGYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 102 LEEAINAAELGFDIIGT-TLSGYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHHTT-SEEE--TTTTSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHHHcCCCEEEc-ccccCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 46677888899999997 777776543 5556666653 89999999999999999999999999999999887
Q ss_pred hHH-HHHHHHH
Q 015899 274 DLD-IRYMTKI 283 (398)
Q Consensus 274 ~~~-L~~Li~~ 283 (398)
+.. .+.|++.
T Consensus 179 P~~It~~F~~a 189 (192)
T PF04131_consen 179 PQEITKRFVDA 189 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 755 5666554
No 323
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.79 E-value=0.015 Score=58.93 Aligned_cols=86 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe--------ccCCcCCC----CHHHHHHHHhcCCCCcEEeccccCC
Q 015899 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSIL--------TDEKYFKG----SFENLEAVRSAGVKCPLLCKEFIVD 250 (398)
Q Consensus 183 vKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL--------Td~~~F~G----s~edL~~Ir~a~v~lPVL~KDFIid 250 (398)
+|+.-|..-+|..+....+.|+...++||++|-|- |......| .+.-+..++++ .++||+.-..|.+
T Consensus 131 i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a-~~~pVIadGGIr~ 209 (321)
T TIGR01306 131 IKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-ARKPIIADGGIRT 209 (321)
T ss_pred HHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHh-cCCeEEEECCcCc
Confidence 33333433233333446689999999999999875 22221112 24567777876 7999999999999
Q ss_pred HHHHHHHHHcCcCEEEEec
Q 015899 251 AWQIYYARTKGADAVLLIA 269 (398)
Q Consensus 251 ~~QI~eAr~~GADaVLLia 269 (398)
...|..|.++|||+|.+..
T Consensus 210 ~~Di~KALa~GAd~Vmig~ 228 (321)
T TIGR01306 210 HGDIAKSIRFGASMVMIGS 228 (321)
T ss_pred HHHHHHHHHcCCCEEeech
Confidence 9999999999999999963
No 324
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.76 E-value=0.043 Score=51.38 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccC---CcC-CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDE---KYF-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~---~~F-~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~-GADaVLLiaai 271 (398)
.+..++++.+++.|++.|+|-.-. .+. ...++.++.+|+. +++||+.-+.|.++.++.++... |||+|.+.-.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 378899999999999999875421 122 2467888899986 89999998888999999999887 89999998888
Q ss_pred CChHH
Q 015899 272 LPDLD 276 (398)
Q Consensus 272 L~~~~ 276 (398)
+.+.+
T Consensus 217 l~~P~ 221 (231)
T cd02801 217 LGNPW 221 (231)
T ss_pred HhCCH
Confidence 86644
No 325
>PRK15452 putative protease; Provisional
Probab=95.75 E-value=0.26 Score=52.10 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=78.2
Q ss_pred CHHHHHHHHHcCcCEEEEecc---------CCChHHHHHHHHHHHHcCCcEEEEcC---CHHHH-------HHHhccCCC
Q 015899 250 DAWQIYYARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTALVEVH---DEREM-------DRVLGIEGI 310 (398)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl-------~rAl~l~Ga 310 (398)
+..|+..|..+|||+|.+... .++.+++++.+++||..|..+.+-+. ..+|+ +...++ |+
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~-gv 90 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAM-KP 90 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhC-CC
Confidence 567899999999999999654 34567899999999999999988722 23343 444454 66
Q ss_pred cEEeeccccCcccccChhhHHHHhhhhcccccccCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 311 ELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 311 ~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
+-|=+.| +.. ..+++.. . | ++.+. ..-.|++...++.+.+.|++.|++..-|
T Consensus 91 DgvIV~d---------~G~-l~~~ke~----~-p-~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 91 DALIMSD---------PGL-IMMVREH----F-P-EMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CEEEEcC---------HHH-HHHHHHh----C-C-CCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 6655553 222 2333321 1 1 33333 3557899999999999999999988766
No 326
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=95.74 E-value=0.11 Score=52.03 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=62.8
Q ss_pred CCHHHHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCcCEEEEeccCCC---hH-HHHHHHHHHHHcCCcEEEEcCCH
Q 015899 225 GSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP---DL-DIRYMTKICKLLGLTALVEVHDE 298 (398)
Q Consensus 225 Gs~edL~~Ir~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~---~~-~L~~Li~~a~~LGL~~LVEVht~ 298 (398)
=+++.|+.+++. ..+||+ +=..|-+|.++..+..+|||+|.++..+.. +. ..+.|++.... -+|.
T Consensus 184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~--------~~~~ 254 (287)
T TIGR00343 184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH--------YDNP 254 (287)
T ss_pred CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH--------cCCH
Confidence 477888888886 789998 878877999999999999999999999973 32 35666665444 2444
Q ss_pred HHHHHH-hccCCCcEEeeccccC
Q 015899 299 REMDRV-LGIEGIELIGINNRNL 320 (398)
Q Consensus 299 eEl~rA-l~l~Ga~iIGINnRdL 320 (398)
+-+..+ ..+ |-.+.|+|...+
T Consensus 255 ~~~~e~s~~~-~~~m~g~~~~~~ 276 (287)
T TIGR00343 255 EKLAEVSKDL-GEAMKGISISSI 276 (287)
T ss_pred HHHHHHHccc-cccCCCCccccC
Confidence 444333 344 667889986655
No 327
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=95.72 E-value=0.052 Score=52.69 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHc----CCcEEEEeccCCcCCCC---HHHHHHHHhcCCCC-cEEeccccCCHHHHHHHHHcCcCEEEE
Q 015899 196 DFDPVEIARSYEKG----GAACLSILTDEKYFKGS---FENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLL 267 (398)
Q Consensus 196 ~~dp~~iA~aY~~~----GA~aISVLTd~~~F~Gs---~edL~~Ir~a~v~l-PVL~KDFIid~~QI~eAr~~GADaVLL 267 (398)
+.+..++|..|.-+ |-.. +.+|.....|+ ++.++.+|+. +++ ||+....|.++.|+.++..+|||+|.+
T Consensus 136 ~~~~~~~~~~~~lA~~~~g~~~--vYle~gs~~g~~~~~e~I~~v~~~-~~~~pvivGGGIrs~e~a~~~l~~GAD~VVV 212 (232)
T PRK04169 136 PLDKPDIAAYAALAAEYLGMPI--VYLEYGGGAGDPVPPEMVKAVKKA-LDITPLIYGGGIRSPEQARELMAAGADTIVV 212 (232)
T ss_pred CCChHHHHHHHHHHHHHcCCCe--EEEECCCCCCCCCCHHHHHHHHHh-cCCCcEEEECCCCCHHHHHHHHHhCCCEEEE
Confidence 56778888777765 4442 23344444466 8899999986 788 999999999999999999999999999
Q ss_pred eccCCChHH
Q 015899 268 IAAVLPDLD 276 (398)
Q Consensus 268 iaaiL~~~~ 276 (398)
...+..+.+
T Consensus 213 GSai~~d~~ 221 (232)
T PRK04169 213 GNIIEEDPK 221 (232)
T ss_pred ChHHhhCHH
Confidence 988886544
No 328
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.67 E-value=0.037 Score=55.42 Aligned_cols=93 Identities=25% Similarity=0.234 Sum_probs=70.7
Q ss_pred CccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEec-cCCcCC---CCHHHHHHHHh
Q 015899 160 ARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFK---GSFENLEAVRS 235 (398)
Q Consensus 160 ~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLT-d~~~F~---Gs~edL~~Ir~ 235 (398)
+..+.+.|+.. ...|++.+ +| .+.|+..++.||++|.+-- +.+-.. +++..+..+++
T Consensus 98 p~~~i~~lk~~-----g~~v~~~v----~s----------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~ 158 (307)
T TIGR03151 98 PGKYIPRLKEN-----GVKVIPVV----AS----------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVD 158 (307)
T ss_pred cHHHHHHHHHc-----CCEEEEEc----CC----------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHH
Confidence 34577777763 35677666 22 3678888999999998732 222222 36788888888
Q ss_pred cCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 236 a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
. +++||+.-..|.++.++..+...|||+|.+....+
T Consensus 159 ~-~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~ 194 (307)
T TIGR03151 159 A-VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFL 194 (307)
T ss_pred H-hCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHh
Confidence 6 89999999999999999999999999999999876
No 329
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.67 E-value=0.081 Score=50.93 Aligned_cols=74 Identities=26% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccC--CcCCCCHHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDE--KYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~--~~F~Gs~edL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+.+.+..|.+.+..| ++++-.+ +.+ ++++.++.+|+. + ++||+....|.++.|+.++..+|||.|.+...+.
T Consensus 134 ~e~~~ayA~aae~~g---~~ivyLe~SG~~-~~~e~I~~v~~~-~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 134 PEDAAAYALAAEYLG---MPIVYLEYSGAY-GPPEVVRAVKKV-LGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred HHHHHHHHHHHHHcC---CeEEEeCCCCCc-CCHHHHHHHHHh-cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 445666777888888 6666444 222 678888888886 7 8999999999999999999999999999998888
Q ss_pred Ch
Q 015899 273 PD 274 (398)
Q Consensus 273 ~~ 274 (398)
.+
T Consensus 209 ~~ 210 (219)
T cd02812 209 ED 210 (219)
T ss_pred CC
Confidence 75
No 330
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=95.65 E-value=0.12 Score=52.26 Aligned_cols=171 Identities=21% Similarity=0.281 Sum_probs=110.5
Q ss_pred CCCCH-HHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCc--EEecccc-CCHHHHHHHHHcCcCEEEE--e
Q 015899 195 EDFDP-VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP--LLCKEFI-VDAWQIYYARTKGADAVLL--I 268 (398)
Q Consensus 195 ~~~dp-~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lP--VL~KDFI-id~~QI~eAr~~GADaVLL--i 268 (398)
.+.+. ..+.+..++.|..||-|=.|...++-...|++ .. ..+| +-.|+|= .+.-.+.++-..|...-.. +
T Consensus 131 kdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~---n~-f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~i 206 (363)
T KOG0538|consen 131 KDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIK---NK-FSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQI 206 (363)
T ss_pred CchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhh---hc-ccCCcccccccccccccccCCcccchhhhhhhhcCC
Confidence 34444 45678999999999999888888877777764 32 4555 3356662 1222233333333322211 2
Q ss_pred ccCCChHHHHHHHHHHHHcCCcEE-EEcCCHHHHHHHhccCCCcEEeecc---ccCcccccChhhHHHHhhhhccccccc
Q 015899 269 AAVLPDLDIRYMTKICKLLGLTAL-VEVHDEREMDRVLGIEGIELIGINN---RNLETFEVDNSNTKKLLEGERGEIIRQ 344 (398)
Q Consensus 269 aaiL~~~~L~~Li~~a~~LGL~~L-VEVht~eEl~rAl~l~Ga~iIGINn---RdL~tf~vDl~~t~~L~~~i~~~~i~~ 344 (398)
-.-++-+|++-|-.. -.+.++ =-|-+.+++..|.+. |++=|=+.| |-+..---.++...++++.+ .
T Consensus 207 d~Sl~W~Di~wLr~~---T~LPIvvKGilt~eDA~~Ave~-G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV------~ 276 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSI---TKLPIVVKGVLTGEDARKAVEA-GVAGIIVSNHGGRQLDYVPATIEALPEVVKAV------E 276 (363)
T ss_pred CCCCChhhhHHHHhc---CcCCeEEEeecccHHHHHHHHh-CCceEEEeCCCccccCcccchHHHHHHHHHHh------c
Confidence 233566777766543 244443 357799999999997 887444443 44433222344555555543 3
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEccccc
Q 015899 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 345 ~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLm 379 (398)
..+.|..-||+.+..|+.+...+||.+|+||.-++
T Consensus 277 ~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 277 GRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIV 311 (363)
T ss_pred CceEEEEecCcccchHHHHHHhcccceEEecCchh
Confidence 45789999999999999999999999999998765
No 331
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.62 E-value=0.057 Score=54.35 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCC-----------------------CHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKG-----------------------SFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~G-----------------------s~edL~~Ir~a~v~lPVL~KDFIid~~QI 254 (398)
+..++|+.++++||++|.+..- +++. +++.+..+++. +++||+.-..|.+..++
T Consensus 178 ~~~~~a~~l~~~G~dgI~~~n~--~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da 254 (334)
T PRK07565 178 NLANMAKRLDAAGADGLVLFNR--FYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDV 254 (334)
T ss_pred hHHHHHHHHHHcCCCeEEEECC--cCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHH
Confidence 6889999999999999987421 1111 13455666775 79999999999999999
Q ss_pred HHHHHcCcCEEEEeccCCC
Q 015899 255 YYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~ 273 (398)
.+...+|||+|-+...++.
T Consensus 255 ~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 255 IKMLLAGADVVMIASALLR 273 (334)
T ss_pred HHHHHcCCCceeeehHHhh
Confidence 9999999999999888774
No 332
>PRK15108 biotin synthase; Provisional
Probab=95.52 E-value=1.7 Score=44.25 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHcCCcEEEEecc-CCcCCCCHHHHHHH----HhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc--
Q 015899 198 DPVEIARSYEKGGAACLSILTD-EKYFKGSFENLEAV----RSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA-- 270 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd-~~~F~Gs~edL~~I----r~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa-- 270 (398)
...+.|+.+.+.|+..+.+.+- ..-+.=.++++..+ |+ ..+++..--..+++.++.+.+++|+|.+.+...
T Consensus 80 EI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~--~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~ 157 (345)
T PRK15108 80 QVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA--MGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTS 157 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh--CCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccC
Confidence 3444456666789988877532 11111234444443 43 356654333457888888889999998877332
Q ss_pred ------CC---ChHHHHHHHHHHHHcCCcE----EEEc-CCHHHHHHHh----ccC-CCcEEeeccc------cCcccc-
Q 015899 271 ------VL---PDLDIRYMTKICKLLGLTA----LVEV-HDEREMDRVL----GIE-GIELIGINNR------NLETFE- 324 (398)
Q Consensus 271 ------iL---~~~~L~~Li~~a~~LGL~~----LVEV-ht~eEl~rAl----~l~-Ga~iIGINnR------dL~tf~- 324 (398)
+. +-++--+.++.+++.|+.+ |+-. .+.+|....+ ++. ..+.|.+|-. .+....
T Consensus 158 p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~ 237 (345)
T PRK15108 158 PEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDD 237 (345)
T ss_pred hHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCC
Confidence 22 2244555667788888866 2221 2555543332 221 2346777633 222221
Q ss_pred cChhhHHHHhhhhcccccccCCceEEEecC-CCCHHHHHHHHHcCCCEEEEccc-ccCCCChHHHHHhhh
Q 015899 325 VDNSNTKKLLEGERGEIIRQKNIIVVGESG-LFTPDDIAYVQEAGVKAVLVGES-IVKQDDPGKGITGLF 392 (398)
Q Consensus 325 vDl~~t~~L~~~i~~~~i~~~~v~vVAESG-I~t~eD~~~l~~~GadaVLVGea-Lmk~~dp~~~i~~L~ 392 (398)
++.....+.+...| .+.|...+.++.|- ...++.......+||+++++|+. |+......+...+++
T Consensus 238 ~~~~e~lr~iAi~R--l~lp~~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i 305 (345)
T PRK15108 238 VDAFDFIRTIAVAR--IMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLF 305 (345)
T ss_pred CCHHHHHHHHHHHH--HHCCCceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHH
Confidence 23333344333322 13344455555555 24455567788999999999997 566554444444444
No 333
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.51 E-value=0.76 Score=47.84 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCc----C-CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKY----F-KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~----F-~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
++.+.++.+.+.|++.|.+- +.| | ...++.|+.+++. +++||+.-. .+++..+.++..+|||.|.++.++.
T Consensus 119 t~~e~~~~a~~~GaD~I~~~--pg~~~~~~~~~~~~~l~~l~~~-~~iPI~a~G-GI~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 119 DPVKRAVELEELGVDYINVH--VGIDQQMLGKDPLELLKEVSEE-VSIPIAVAG-GLDAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred CHHHHHHHHHhcCCCEEEEE--eccchhhcCCChHHHHHHHHhh-CCCcEEEEC-CCCHHHHHHHHHcCCCEEEEChHHc
Confidence 45667788888999999664 332 1 3456889999876 789998644 5688999999999999999999988
Q ss_pred ChHHHHHHHHHHH----H---cCCcEEEEcCCHHHHHHHhccCCC----------------------cEEeeccccCccc
Q 015899 273 PDLDIRYMTKICK----L---LGLTALVEVHDEREMDRVLGIEGI----------------------ELIGINNRNLETF 323 (398)
Q Consensus 273 ~~~~L~~Li~~a~----~---LGL~~LVEVht~eEl~rAl~l~Ga----------------------~iIGINnRdL~tf 323 (398)
..++.++.++..+ + ..++-+-+--+.+.+++...+.-+ .++|-- +.+...
T Consensus 195 ~~~d~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~t~~i~d~l~~~g~~~~i~p~~~~~~~~G~A-~Tv~~~ 273 (430)
T PRK07028 195 KSADVTEAARKIREAIDSGKPVKIDKFKKSLDEEIREIFMQVSTPNISDAMHRKGAMKGIKPLVRGTKMVGKA-VTVQTF 273 (430)
T ss_pred CCCCHHHHHHHHHHHHhccCCccccccccCCCHHHHHHhcCCCCCcHHhhhhccCCCceeeecCCCCeEEEEE-EEEEee
Confidence 6434433333322 2 233333333444555544443111 111111 111111
Q ss_pred ccChhhHHHHhhhhcccccccCCceEEEecC----CCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 324 EVDNSNTKKLLEGERGEIIRQKNIIVVGESG----LFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 324 ~vDl~~t~~L~~~i~~~~i~~~~v~vVAESG----I~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
..|.....+.+.. ..|.+++||..++ ++.---...++..|+.|++|--++-.
T Consensus 274 ~~d~~~~~~~~~~-----~~~G~VlVi~~~~~~~a~~G~~~~~~a~~~G~~G~VidG~vRD 329 (430)
T PRK07028 274 AGDWAKPVEAIDV-----AKPGDVIVIYNSSKDIAPWGELATLSCLNKGIAGVVIDGAVRD 329 (430)
T ss_pred CCCcHHHHHHHhc-----CCCCeEEEEECCCCCceeecHHHHHHHHHCCCeEEEEeeccCC
Confidence 2233333333333 3456777776532 33333346678889999998766543
No 334
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.50 E-value=0.14 Score=52.62 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=71.5
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec---cCC--ChHHHHHHHHHHHHc--CCcEEEE--cC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA---AVL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia---aiL--~~~~L~~Li~~a~~L--GL~~LVE--Vh 296 (398)
+.++|..+|+. +++||+.|. +.++.....+..+|||+|.+.- +.+ .+..+..+.+.+..+ .+.+++. |.
T Consensus 209 ~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr 286 (351)
T cd04737 209 SPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVR 286 (351)
T ss_pred CHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 67999999987 899999996 5788888899999999999831 122 123455565665555 3777665 67
Q ss_pred CHHHHHHHhccCCCcEEeeccccCc
Q 015899 297 DEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
+-.++.+++.+ ||+.++|...-+.
T Consensus 287 ~g~Di~kaLal-GA~~V~iGr~~l~ 310 (351)
T cd04737 287 RGEHVFKALAS-GADAVAVGRPVLY 310 (351)
T ss_pred CHHHHHHHHHc-CCCEEEECHHHHH
Confidence 99999999998 9999999854443
No 335
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.48 E-value=0.034 Score=56.39 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHcCCcEEEEecc---------------CCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILTD---------------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd---------------~~~F~G------s~edL~~Ir~a~v--~lPVL~KDFIid~~QI 254 (398)
+..++|++.+++||++|.+..- .+.+.| +++.+..+++. + ++||+.-..|.+..++
T Consensus 226 ~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~-~~~~ipIig~GGI~s~eda 304 (344)
T PRK05286 226 ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKE-LGGRLPIIGVGGIDSAEDA 304 (344)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 4889999999999999999641 112223 34577777876 7 7999999999999999
Q ss_pred HHHHHcCcCEEEEeccCC
Q 015899 255 YYARTKGADAVLLIAAVL 272 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (398)
.+...+|||+|-+..+++
T Consensus 305 ~e~l~aGAd~V~v~~~~~ 322 (344)
T PRK05286 305 YEKIRAGASLVQIYSGLI 322 (344)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 999999999999987765
No 336
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.44 E-value=0.13 Score=53.01 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=70.2
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc---CC--ChHHHHHHHHHHHHcC--CcEEEE--cC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLLG--LTALVE--VH 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL--~~~~L~~Li~~a~~LG--L~~LVE--Vh 296 (398)
+.++|+.+|+. +++||+.|+ |.++.....+.++|+|+|.+-.. -+ .+..+..|.+....++ +.+++. |.
T Consensus 216 ~w~~i~~l~~~-~~~PvivKG-v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr 293 (367)
T TIGR02708 216 SPRDIEEIAGY-SGLPVYVKG-PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVR 293 (367)
T ss_pred CHHHHHHHHHh-cCCCEEEeC-CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcC
Confidence 46899999986 899999996 56788888999999999876332 22 1223555555555554 788876 67
Q ss_pred CHHHHHHHhccCCCcEEeeccccCc
Q 015899 297 DEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
+..++.+++.+ ||+.++|..--|.
T Consensus 294 ~g~Dv~KaLal-GAd~V~igR~~l~ 317 (367)
T TIGR02708 294 RGQHVFKALAS-GADLVALGRPVIY 317 (367)
T ss_pred CHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 99999999998 9999999844333
No 337
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.43 E-value=0.083 Score=49.76 Aligned_cols=77 Identities=29% Similarity=0.227 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHcCCcEEEEe----ccC--CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 198 DPVEIARSYEKGGAACLSIL----TDE--KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL----Td~--~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
++.+ +....+.|++.|.+- |.. ..+...++.++.+++. +++||+.-..|.++.++.++..+|||+|++..++
T Consensus 132 t~~e-a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 132 TLEE-ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-LGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred CHHH-HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 3433 566777899999652 111 1234467899999986 7999999888889999999999999999999887
Q ss_pred CChHH
Q 015899 272 LPDLD 276 (398)
Q Consensus 272 L~~~~ 276 (398)
...++
T Consensus 210 ~~~~~ 214 (219)
T cd04729 210 TRPEH 214 (219)
T ss_pred hChHh
Confidence 76543
No 338
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.36 E-value=0.5 Score=47.18 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=93.1
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc-----------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV----------------- 295 (398)
.++|| |.-|-.-+...+..|..+|-+.|.++++.|+.++ .++++++|+..|+.+=.|+
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~ 151 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETE 151 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-T
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccccccc
Confidence 58998 4567767788899999999999999999998644 7788999999888773332
Q ss_pred ---CCHHHHHHHhccCCCcEEeeccccC----c---ccccChhhHHHHhhhhcccccccCCceEEEecCCC-CHHHHHHH
Q 015899 296 ---HDEREMDRVLGIEGIELIGINNRNL----E---TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-TPDDIAYV 364 (398)
Q Consensus 296 ---ht~eEl~rAl~l~Ga~iIGINnRdL----~---tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~-t~eD~~~l 364 (398)
.+++|+.+..+..|+|.+.+.--+. + +-+.|++...++.+.++ ++++|-=||=. ..++++++
T Consensus 152 ~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-------~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 152 SLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-------DIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp TCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-------TSEEEESSCTTS-HHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-------CCCEEEECCCCCCHHHHHHH
Confidence 2567766665445899887752221 1 23567888777766521 45666544433 55699999
Q ss_pred HHcCCCEEEEcccccC
Q 015899 365 QEAGVKAVLVGESIVK 380 (398)
Q Consensus 365 ~~~GadaVLVGeaLmk 380 (398)
.++|+.-|=||+.+..
T Consensus 225 i~~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 225 IKNGISKINIGTELRR 240 (287)
T ss_dssp HHTTEEEEEESHHHHH
T ss_pred HHcCceEEEEehHHHH
Confidence 9999999999988764
No 339
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.32 E-value=0.37 Score=48.87 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=79.7
Q ss_pred HHHHHHcCcCEEEEeccC-------CCh-----------------HHHHHHHHHHHH-cCCcEEEEc-------------
Q 015899 254 IYYARTKGADAVLLIAAV-------LPD-----------------LDIRYMTKICKL-LGLTALVEV------------- 295 (398)
Q Consensus 254 I~eAr~~GADaVLLiaai-------L~~-----------------~~L~~Li~~a~~-LGL~~LVEV------------- 295 (398)
...|+.+|.|+|-|-++- |++ .-+.++++..++ +|-+. |-+
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~-v~vRis~~~~~~~~~~ 236 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR-VGIRLSPFGTFNDMGD 236 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc-eEEEECccccCCCCCC
Confidence 345667899999886553 221 114456665554 56542 322
Q ss_pred -CCHHHHHH---HhccCCCcEEeeccccCcccc--cChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC-
Q 015899 296 -HDEREMDR---VLGIEGIELIGINNRNLETFE--VDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG- 368 (398)
Q Consensus 296 -ht~eEl~r---Al~l~Ga~iIGINnRdL~tf~--vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G- 368 (398)
.+.+|... .++-.|+++|-+......... ...+...++.+. .+++|++.|||. ++++..+.+.|
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~--------~~ipvi~~G~i~-~~~a~~~l~~g~ 307 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA--------FKGPLIAAGGYD-AESAEAALADGK 307 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH--------cCCCEEEECCCC-HHHHHHHHHcCC
Confidence 24444322 232137889888533222211 233333444332 357899999997 99999999876
Q ss_pred CCEEEEcccccCCCChHHHHHh
Q 015899 369 VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 369 adaVLVGeaLmk~~dp~~~i~~ 390 (398)
||.|.+|.+++..++....+++
T Consensus 308 ~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 308 ADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred CCEEEeCHhhhhCcCHHHHHhc
Confidence 9999999999999998877754
No 340
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.23 E-value=0.13 Score=51.77 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccC----------Cc-----CCC------CHHHHHHHHhcCCCCcEEeccccCCHHHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILTDE----------KY-----FKG------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~----------~~-----F~G------s~edL~~Ir~a~v~lPVL~KDFIid~~QI~e 256 (398)
+..++|+..+++||++|.+.-=- .. +.| +++.+..+++. +++||+.-..|.+..++++
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~~Da~e 254 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR-VKASLAASGGVHDAEDVVK 254 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc-cCCCEEEECCCCCHHHHHH
Confidence 78899999999999999874210 00 001 24566777776 7999999889999999999
Q ss_pred HHHcCcCEEEEeccCCC
Q 015899 257 ARTKGADAVLLIAAVLP 273 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL~ 273 (398)
...+|||+|-+..+++.
T Consensus 255 ~l~aGA~~Vqv~ta~~~ 271 (325)
T cd04739 255 YLLAGADVVMTTSALLR 271 (325)
T ss_pred HHHcCCCeeEEehhhhh
Confidence 99999999999988774
No 341
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.23 E-value=0.039 Score=55.47 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCCcEEEEecc---------------CCcCCCC------HHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILTD---------------EKYFKGS------FENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd---------------~~~F~Gs------~edL~~Ir~a~v--~lPVL~KDFIid~~QI 254 (398)
+..++|++.+++||++|.+..- .+-|.|. ++.+..+++. + ++||+.-..|.++.++
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~-~~~~ipIi~~GGI~t~~da 295 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKL-TGGKIPIIGVGGISSGEDA 295 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHHH
Confidence 6789999999999999997531 1123342 5778888886 7 7999998889999999
Q ss_pred HHHHHcCcCEEEEeccCC
Q 015899 255 YYARTKGADAVLLIAAVL 272 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (398)
.+...+|||+|-+...++
T Consensus 296 ~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 296 YEKIRAGASLVQLYTGLV 313 (327)
T ss_pred HHHHHcCCCHHhccHHHH
Confidence 999999999999988765
No 342
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.22 E-value=0.11 Score=53.92 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHcCCcEEEE--------------------e---ccCCcCCCC------HHHHHHHHhcCC---CCcEEe
Q 015899 197 FDPVEIARSYEKGGAACLSI--------------------L---TDEKYFKGS------FENLEAVRSAGV---KCPLLC 244 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISV--------------------L---Td~~~F~Gs------~edL~~Ir~a~v---~lPVL~ 244 (398)
.+..++|++.+++||++|+. + |..+.+.|. ++.+..++++ + ++||+.
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~-~~~~~ipIig 258 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD-PETRGLPISG 258 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc-cccCCCCEEe
Confidence 36889999999999999993 1 122344453 4666677765 5 799998
Q ss_pred ccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 245 KEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 245 KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
-..|.+..++++...+|||+|-+..+++-
T Consensus 259 ~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 259 IGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred ecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 88899999999999999999999888663
No 343
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.18 E-value=0.057 Score=52.67 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHcCCcEEEEec-------c-----------CCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCH
Q 015899 198 DPVEIARSYEKGGAACLSILT-------D-----------EKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDA 251 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT-------d-----------~~~F~G------s~edL~~Ir~a~v--~lPVL~KDFIid~ 251 (398)
+..++|+.++++||++|.+-. + ...+.| .++.+..+++. + ++||+.-..|.++
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~-~~~~ipiia~GGI~~~ 255 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAAR-LQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHh-cCCCCCEEEECCCCCH
Confidence 578899999999999999841 0 011122 35677888886 7 8999999999999
Q ss_pred HHHHHHHHcCcCEEEEeccCCCh
Q 015899 252 WQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
.++.+...+|||+|.+..+++.+
T Consensus 256 ~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 256 EDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred HHHHHHHHcCccHheEcHHHHhc
Confidence 99999999999999998877754
No 344
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.14 E-value=0.023 Score=58.00 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=67.3
Q ss_pred EEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-------ccCCcCCCCHHHHHHHHhc-----CCCCcEEecc
Q 015899 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-------TDEKYFKGSFENLEAVRSA-----GVKCPLLCKE 246 (398)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-------Td~~~F~Gs~edL~~Ir~a-----~v~lPVL~KD 246 (398)
.|-++|+.-|..-+|..+.--.+.|+.+..+||+++-|- |-..--+=..--|.+|.+. ....||+...
T Consensus 141 ~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADG 220 (346)
T PRK05096 141 FVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDG 220 (346)
T ss_pred HHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecC
Confidence 355677777777777777777889999999999999753 2221111122245544211 2478999999
Q ss_pred ccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 247 FIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 247 FIid~~QI~eAr~~GADaVLLiaai 271 (398)
.|..+-.|..|.++|||+|.|..-+
T Consensus 221 Gi~~sGDI~KAlaaGAd~VMlGsll 245 (346)
T PRK05096 221 GCTVPGDVAKAFGGGADFVMLGGML 245 (346)
T ss_pred CcccccHHHHHHHcCCCEEEeChhh
Confidence 9999999999999999999997543
No 345
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=95.12 E-value=0.93 Score=46.41 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH----HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc-
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSF----ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA- 270 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~----edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa- 270 (398)
....++-|+...+.||.-..+++--.-.+=.+ +.++.|++. +.+++.+-=...++.|..+.+.+|+|+......
T Consensus 86 ~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~-~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeT 164 (335)
T COG0502 86 VEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEE-LGLEVCASLGMLTEEQAEKLADAGVDRYNHNLET 164 (335)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHh-cCcHHhhccCCCCHHHHHHHHHcChhheeccccc
Confidence 33577889999999987777765332111122 233444544 678887666689999999999999999988332
Q ss_pred ----------CCChHHHHHHHHHHHHcCCcE----EEEcC-CHHH-HHHH---hccCCCcEEeeccc------cCcc-cc
Q 015899 271 ----------VLPDLDIRYMTKICKLLGLTA----LVEVH-DERE-MDRV---LGIEGIELIGINNR------NLET-FE 324 (398)
Q Consensus 271 ----------iL~~~~L~~Li~~a~~LGL~~----LVEVh-t~eE-l~rA---l~l~Ga~iIGINnR------dL~t-f~ 324 (398)
-.+-++--.-++.++++||++ ++-.. +.+| ++.+ .++..++-|.||.- -+.. -.
T Consensus 165 s~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~ 244 (335)
T COG0502 165 SPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKP 244 (335)
T ss_pred CHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCC
Confidence 224455556667788999988 44442 3333 2222 33322889999832 2221 12
Q ss_pred cChhhHHHHhhhhcccccccCCceEEEecCCC--CHHHHHHHHHcCCCEEEEcc-cccCCCChHHHHHhh
Q 015899 325 VDNSNTKKLLEGERGEIIRQKNIIVVGESGLF--TPDDIAYVQEAGVKAVLVGE-SIVKQDDPGKGITGL 391 (398)
Q Consensus 325 vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~--t~eD~~~l~~~GadaVLVGe-aLmk~~dp~~~i~~L 391 (398)
+|+-...+.+...| .+-|+..+.++ +|.. .++-...+..+|++++++|. -++...-+...-.++
T Consensus 245 ~~~~e~lk~IA~~R--i~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~ 311 (335)
T COG0502 245 LDPFEFLKTIAVAR--IIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLEL 311 (335)
T ss_pred CCHHHHHHHHHHHH--HHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHH
Confidence 33333333333221 12354444444 5543 34445777789999999999 666555444433333
No 346
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.11 E-value=0.26 Score=50.47 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=84.7
Q ss_pred HHHHHHHHc--CCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEe--------cc
Q 015899 201 EIARSYEKG--GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI--------AA 270 (398)
Q Consensus 201 ~iA~aY~~~--GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi--------aa 270 (398)
+.++...++ |++.|-|=+-.++-..-.++++.+|+. ..-+.+.+.=|.++.+...+..+|||+|.+. .+
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~-~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR 188 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA-FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR 188 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh-CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc
Confidence 455556655 599999988777777778899999986 4445555666799999999999999999765 33
Q ss_pred CCC---hHHHHHHHH---HHHHcCCcEEEE--cCCHHHHHHHhccCCCcEEeec
Q 015899 271 VLP---DLDIRYMTK---ICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 271 iL~---~~~L~~Li~---~a~~LGL~~LVE--Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
.++ -.+|..+.+ .++.++..++.+ +++-.++-+|+.+ ||+.+.+.
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~-GAd~VMlG 241 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGA-GADFVMLG 241 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHc-CCCEEEEC
Confidence 332 134555544 444568888887 6799999999998 99987776
No 347
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.06 E-value=0.25 Score=45.74 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHcCCcEEEEecc---CCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 198 DPVEIARSYEKGGAACLSILTD---EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd---~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
++.+.++.+.+.|++.+.+-+- ..|-...++.++.+++. .+.|.+.=+..+++-.+.+...+|||.|.++.++...
T Consensus 114 t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~-~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 114 DKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKL-VKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred ChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHh-cCCCcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCC
Confidence 4666777677779999987321 12222367788888875 5545555456678888999999999999999998865
Q ss_pred HHHHHHHHHHH
Q 015899 275 LDIRYMTKICK 285 (398)
Q Consensus 275 ~~L~~Li~~a~ 285 (398)
++.++.++..+
T Consensus 193 ~d~~~~~~~l~ 203 (206)
T TIGR03128 193 ADPAEAARQIR 203 (206)
T ss_pred CCHHHHHHHHH
Confidence 55666655544
No 348
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=94.79 E-value=0.072 Score=52.77 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccc
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFE 324 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~ 324 (398)
|..+-|+.+-+.+...||.++.||-|.++++.+.+. +|+|-|..||..+|.
T Consensus 93 lge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y--~DilqvGARNMQNF~ 143 (286)
T COG2876 93 LGEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY--ADILQVGARNMQNFA 143 (286)
T ss_pred cCHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh--hhHHHhcccchhhhH
Confidence 344569999999999999999999999999999984 799999999999884
No 349
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.77 E-value=0.28 Score=49.83 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=41.0
Q ss_pred CceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 390 (398)
++++++-++|.++++++++.+.| +|.|-+|.+++..++....+++
T Consensus 276 ~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 276 DIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHh
Confidence 67899999999999999999976 9999999999999998777654
No 350
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.77 E-value=0.27 Score=51.07 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=71.8
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc---CC--ChHHHHHHHHHHHHc--CCcEEEE--cC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA---VL--PDLDIRYMTKICKLL--GLTALVE--VH 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa---iL--~~~~L~~Li~~a~~L--GL~~LVE--Vh 296 (398)
+.++|+.+|+. .++||+.|+. .+......|..+|||+|.+--. .+ ....+..|.+....+ .+.+++. |.
T Consensus 241 tW~~i~~lr~~-~~~pvivKgV-~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr 318 (383)
T cd03332 241 TWEDLAFLREW-TDLPIVLKGI-LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR 318 (383)
T ss_pred CHHHHHHHHHh-cCCCEEEecC-CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence 57999999986 8999999965 8889999999999999987432 23 122355555555555 3788876 57
Q ss_pred CHHHHHHHhccCCCcEEeeccccCc
Q 015899 297 DEREMDRVLGIEGIELIGINNRNLE 321 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGINnRdL~ 321 (398)
+-.++-+|+.+ ||+.+++...=+.
T Consensus 319 ~G~Dv~KALaL-GA~~v~iGr~~l~ 342 (383)
T cd03332 319 TGADIMKALAL-GAKAVLIGRPYAY 342 (383)
T ss_pred cHHHHHHHHHc-CCCEEEEcHHHHH
Confidence 99999999999 9999999855443
No 351
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.76 E-value=0.59 Score=46.59 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=97.7
Q ss_pred CCCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe--ccC-------CcCCC---
Q 015899 158 PPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL--TDE-------KYFKG--- 225 (398)
Q Consensus 158 ~~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL--Td~-------~~F~G--- 225 (398)
..++.|.+++++.. .+ ..|+-=.|..|-- ..+++-....|....|.+ .|. -.|-|
T Consensus 107 T~T~~~V~~~~~~~---~~-~~I~~TRKT~Pg~---------R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~ 173 (277)
T TIGR01334 107 TYTHKMVTLAKKIS---PM-AVVACTRKAIPLT---------RPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNF 173 (277)
T ss_pred HHHHHHHHHHHhcC---CC-CEEEecCCCCCCh---------hHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcc
Confidence 34688999998642 23 3455555555641 256666677777777777 444 22334
Q ss_pred CH-HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHH
Q 015899 226 SF-ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREM 301 (398)
Q Consensus 226 s~-edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl 301 (398)
++ +-++.+|+.....+|.. +. .+..|..++..+|||.|+|+- ++++++++.++..++.+..+.+|+. |++.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev-~tleea~ea~~~GaDiI~lDn--~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni 249 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EA-DTIEQALTVLQASPDILQLDK--FTPQQLHHLHERLKFFDHIPTLAAAGGINPENI 249 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-EC-CCHHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHhccCCCEEEEEECCCCHHHH
Confidence 33 44556665422333321 11 367799999999999999984 8889999999988877888899998 88998
Q ss_pred HHHhccCCCcEEeecc
Q 015899 302 DRVLGIEGIELIGINN 317 (398)
Q Consensus 302 ~rAl~l~Ga~iIGINn 317 (398)
...... |+++|.+..
T Consensus 250 ~~ya~~-GvD~is~ga 264 (277)
T TIGR01334 250 ADYIEA-GIDLFITSA 264 (277)
T ss_pred HHHHhc-CCCEEEeCc
Confidence 888886 999997763
No 352
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.76 E-value=0.25 Score=45.29 Aligned_cols=83 Identities=18% Similarity=0.085 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe--ccCCcC--CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 196 DFDPVEIARSYEKGGAACLSIL--TDEKYF--KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVL--Td~~~F--~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
..++.+..+ +.+.|++.+.+- .+...| ..+.+.++.+++. .++||..-..| .+.++.++..+|||++.++.++
T Consensus 113 ~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 113 VEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred CCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEEEECCc-CHHHHHHHHhcCCCEEEEeehh
Confidence 346777776 666799987762 223444 3467888888875 68898876654 6999999999999999999888
Q ss_pred CChHHHHHHH
Q 015899 272 LPDLDIRYMT 281 (398)
Q Consensus 272 L~~~~L~~Li 281 (398)
...++..+.+
T Consensus 190 ~~~~d~~~~~ 199 (202)
T cd04726 190 TGAADPAEAA 199 (202)
T ss_pred cCCCCHHHHH
Confidence 7655555444
No 353
>PRK15492 triosephosphate isomerase; Provisional
Probab=94.76 E-value=0.19 Score=49.63 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=74.4
Q ss_pred HHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHH--------------h-cc--------
Q 015899 257 ARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHDEREMDRV--------------L-GI-------- 307 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rA--------------l-~l-------- 307 (398)
.+.+|++.|+|+++=. +++.+..-++.|.+.||.++++|....|-..+ + .+
T Consensus 90 Lkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~~~~i 169 (260)
T PRK15492 90 LKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQLAKL 169 (260)
T ss_pred HHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhhcCce
Confidence 4567999999999833 35557777888999999999999864443322 1 11
Q ss_pred ----CCCcEEeeccccCcccccChhhHHHHhhhhcc---cccc--cCCceEEEecCCCCHHHHHHHHH-cCCCEEEEccc
Q 015899 308 ----EGIELIGINNRNLETFEVDNSNTKKLLEGERG---EIIR--QKNIIVVGESGLFTPDDIAYVQE-AGVKAVLVGES 377 (398)
Q Consensus 308 ----~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~---~~i~--~~~v~vVAESGI~t~eD~~~l~~-~GadaVLVGea 377 (398)
+....||..+.. .+.+...+....+|. ..+. ..++.++-.|++ +|+.+..+.. -.+||+|||.+
T Consensus 170 iIAYEPvWAIGtgg~~-----as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV-~~~N~~~l~~~~diDG~LvG~a 243 (260)
T PRK15492 170 RIAYEPVWAIGEAGIP-----ASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSV-NAENANELFGQPHIDGLFIGRS 243 (260)
T ss_pred EEEECChHHhCCCCCC-----CCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCcc-CHHHHHHHhcCCCCCEEEeehh
Confidence 011124542211 122221111111110 0000 135788888888 7777877754 46999999998
Q ss_pred ccCCCChHHHH
Q 015899 378 IVKQDDPGKGI 388 (398)
Q Consensus 378 Lmk~~dp~~~i 388 (398)
=.+..+-.+.+
T Consensus 244 Sl~~~~F~~Ii 254 (260)
T PRK15492 244 AWDADKFFAII 254 (260)
T ss_pred hcCHHHHHHHH
Confidence 77755544433
No 354
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.85 Score=46.78 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=82.1
Q ss_pred CHHHHHHHHHcCcCEEEEecc---------CCChHHHHHHHHHHHHcCCcEEEEcCC----------HHHHHHHhccCCC
Q 015899 250 DAWQIYYARTKGADAVLLIAA---------VLPDLDIRYMTKICKLLGLTALVEVHD----------EREMDRVLGIEGI 310 (398)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaa---------iL~~~~L~~Li~~a~~LGL~~LVEVht----------~eEl~rAl~l~Ga 310 (398)
+..+++.|.++|||+|-++-. .++.+++++.+++||+.|..+.|=+.+ .+.++.+.++ |+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~-Gv 93 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVEL-GV 93 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHc-CC
Confidence 446788899999999999855 257788999999999999988776542 3456666776 88
Q ss_pred cEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccc
Q 015899 311 ELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 378 (398)
Q Consensus 311 ~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaL 378 (398)
+-|=++ |+-. ..++... .++-.+.+=....+.+.+.++.+.+.|+..++...-|
T Consensus 94 Daviv~---------Dpg~-i~l~~e~----~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA---------DPGL-IMLARER----GPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc---------CHHH-HHHHHHh----CCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccC
Confidence 877666 4433 3333321 1122345556788999999999999998877766443
No 355
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.74 E-value=4.4 Score=39.32 Aligned_cols=169 Identities=16% Similarity=0.140 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCCcEEEEecc-CCcCCCCHHHH----HHHHhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEEec
Q 015899 200 VEIARSYEKGGAACLSILTD-EKYFKGSFENL----EAVRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLIA 269 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd-~~~F~Gs~edL----~~Ir~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLia 269 (398)
.++.+.+.+.|+.+|-++-- -+|+.=+.+.- +.+++. .-++||+..=.-.+.. +...|..+|||+|+++.
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 44566777889999988722 22222233332 333333 1268998654332332 34466788999999988
Q ss_pred cCC---ChHH-HHHHHHHHHHcCCcEEEE-------c-CCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 270 AVL---PDLD-IRYMTKICKLLGLTALVE-------V-HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 270 aiL---~~~~-L~~Li~~a~~LGL~~LVE-------V-ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
-.. ++++ ++++.+.+...++.+++= + =+.+.+.+..+ ...++||-.. ..|+....+++...
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~s-----~~d~~~~~~~~~~~ 173 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKDS-----SGDLDRLTRLIALL 173 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEeC-----CCCHHHHHHHHHhc
Confidence 644 4555 555556666677777642 1 15667776665 3579999632 35777777776642
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChH
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 385 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~ 385 (398)
+.+ +.|..| - -+.+......|++|++-|.+-+-++-..
T Consensus 174 ------~~~-~~v~~G-~--d~~~~~~l~~G~~G~i~~~~n~~p~~~~ 211 (281)
T cd00408 174 ------GPD-FAVLSG-D--DDLLLPALALGADGAISGAANVAPKLAV 211 (281)
T ss_pred ------CCC-eEEEEc-c--hHHHHHHHHcCCCEEEehHHhhCHHHHH
Confidence 234 333333 2 3456667789999999997655443333
No 356
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.64 E-value=3.1 Score=42.85 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=90.9
Q ss_pred CCCcE-EeccccCC-------------HHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE-----
Q 015899 238 VKCPL-LCKEFIVD-------------AWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE----- 294 (398)
Q Consensus 238 v~lPV-L~KDFIid-------------~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE----- 294 (398)
.++|| |.=|-..+ ...+.++...|-+.|..+++-|+-++ .++++++|+..|+.+=.|
T Consensus 86 ~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~ig 165 (345)
T cd00946 86 YGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITG 165 (345)
T ss_pred CCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 57887 45555444 22344556889999999999998544 678889999888877222
Q ss_pred ----------------cCCHHHHHHHhccC----CCcEEeec----cccCc--ccccChhhHHHHhhhhcccccc---cC
Q 015899 295 ----------------VHDEREMDRVLGIE----GIELIGIN----NRNLE--TFEVDNSNTKKLLEGERGEIIR---QK 345 (398)
Q Consensus 295 ----------------Vht~eEl~rAl~l~----Ga~iIGIN----nRdL~--tf~vDl~~t~~L~~~i~~~~i~---~~ 345 (398)
-.+++|+.+..+.. |.+.+.+. .-.++ +-+.|++...++.+.++.. +. +.
T Consensus 166 g~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~-~~~~~~~ 244 (345)
T cd00946 166 GEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREK-LGLADDK 244 (345)
T ss_pred CcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHh-hccccCC
Confidence 24667777666532 55755443 33443 3456777777773321111 10 01
Q ss_pred Cc--eEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 346 NI--IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 346 ~v--~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++ ++=..||+ +.++++++.++|+.-|=|++.+-.
T Consensus 245 ~ipLVLHGgSG~-~~e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 245 PLYFVFHGGSGS-TKEEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred CCCEEEeCCCCC-CHHHHHHHHHcCCeeEEeCcHHHH
Confidence 33 34456677 668899999999999999987754
No 357
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=94.61 E-value=2.2 Score=43.97 Aligned_cols=149 Identities=15% Similarity=0.052 Sum_probs=94.5
Q ss_pred HHHHHhcCCCCcE-EeccccCC--HHHHHHHHHcC-----------cCEEEEeccCCChHH----HHHHHHHHHHcCCcE
Q 015899 230 LEAVRSAGVKCPL-LCKEFIVD--AWQIYYARTKG-----------ADAVLLIAAVLPDLD----IRYMTKICKLLGLTA 291 (398)
Q Consensus 230 L~~Ir~a~v~lPV-L~KDFIid--~~QI~eAr~~G-----------ADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~ 291 (398)
+..+.+. .++|| |.-|-..+ --.|.+|..+| -+.|..+++-|+-++ .++.+++||..|+.+
T Consensus 84 v~~~A~~-~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsV 162 (350)
T PRK09197 84 VHEVAEH-YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTL 162 (350)
T ss_pred HHHHHHH-CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3333443 57897 56676666 22455555555 999999999998543 677889999888776
Q ss_pred EEE---------------------cCCHHHHHHHhccCCC----cEEeec----cccCc--ccccChhhHHHHhhhhccc
Q 015899 292 LVE---------------------VHDEREMDRVLGIEGI----ELIGIN----NRNLE--TFEVDNSNTKKLLEGERGE 340 (398)
Q Consensus 292 LVE---------------------Vht~eEl~rAl~l~Ga----~iIGIN----nRdL~--tf~vDl~~t~~L~~~i~~~ 340 (398)
=.| -.|++|+.+..+..|+ +.+.|. .-.++ .-+.|++...++.+.+.+.
T Consensus 163 EaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~ 242 (350)
T PRK09197 163 EIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKK 242 (350)
T ss_pred EEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHh
Confidence 111 2467777766654476 665554 33343 2446777777776553100
Q ss_pred -ccccCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 341 -IIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 341 -~i~~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
.+...++++| ..||+ +.++++++.++|+.-|=|++.+..
T Consensus 243 ~~~~~~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~ 284 (350)
T PRK09197 243 FGLPAKPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW 284 (350)
T ss_pred hCCCCCCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH
Confidence 0000134455 45566 558899999999999999988754
No 358
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.61 E-value=1 Score=40.23 Aligned_cols=134 Identities=18% Similarity=0.086 Sum_probs=80.7
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC------HHHHHHHHhcC-CCCcEEeccc-
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS------FENLEAVRSAG-VKCPLLCKEF- 247 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs------~edL~~Ir~a~-v~lPVL~KDF- 247 (398)
++.||+-+--.+. . ....+..+.++.+.+.||+++.+.. +.|+.-+ .++++.+++.. .++|++....
T Consensus 48 ~~~v~~~v~~~~~---~-~~~~~~~~~a~~a~~~Gad~i~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p 122 (201)
T cd00945 48 DVPVIVVVGFPTG---L-TTTEVKVAEVEEAIDLGADEIDVVI-NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET 122 (201)
T ss_pred CCeEEEEecCCCC---C-CcHHHHHHHHHHHHHcCCCEEEEec-cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence 5678876643321 1 1234677889999999999999865 3344444 67777887751 2899885543
Q ss_pred --cCCHHHHHH----HHHcCcCEEEEeccCC----ChHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHhccCCCcEEee
Q 015899 248 --IVDAWQIYY----ARTKGADAVLLIAAVL----PDLDIRYMTKICK-LLGLTALVEVHDEREMDRVLGIEGIELIGI 315 (398)
Q Consensus 248 --Iid~~QI~e----Ar~~GADaVLLiaaiL----~~~~L~~Li~~a~-~LGL~~LVEVht~eEl~rAl~l~Ga~iIGI 315 (398)
..++-++.+ +...|+|+|=.-.... +-..+..+.+... ...+.++-.+.+.+.+..++.+ |++-+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~-Ga~g~~~ 200 (201)
T cd00945 123 RGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA-GADGIGT 200 (201)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh-ccceeec
Confidence 124444443 3568999987644322 2234444444322 2233334444456888888887 8876553
No 359
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.60 E-value=0.67 Score=47.72 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=92.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI 254 (398)
+++.|-|-|- | ..+-.+.++...++|++.|-|=+-..+-..-.+.++.+|+...++||+... +.+..+.
T Consensus 95 ~~l~V~aavg---~-------~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a 163 (352)
T PF00478_consen 95 GRLLVAAAVG---T-------RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGA 163 (352)
T ss_dssp SCBCEEEEEE---S-------STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHH
T ss_pred ccceEEEEec---C-------CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecc-cCCHHHH
Confidence 5667777762 1 225678899999999999987655544444556788888763469999888 5788888
Q ss_pred HHHHHcCcCEEEEecc---CC----------ChH-HHHHHHHHHHHcCCcEEEE--cCCHHHHHHHhccCCCcEEeec
Q 015899 255 YYARTKGADAVLLIAA---VL----------PDL-DIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 255 ~eAr~~GADaVLLiaa---iL----------~~~-~L~~Li~~a~~LGL~~LVE--Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
.....+|||+|....- +- +.. .+.+..+.++.++..++.+ +++.-++-+|+.+ ||+.+.+.
T Consensus 164 ~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~-GAd~VMlG 240 (352)
T PF00478_consen 164 KDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAA-GADAVMLG 240 (352)
T ss_dssp HHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHT-T-SEEEES
T ss_pred HHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeee-cccceeec
Confidence 8889999999999732 21 221 2555566666789999998 6899999999998 99988776
No 360
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=94.57 E-value=0.28 Score=50.44 Aligned_cols=104 Identities=21% Similarity=0.192 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHc---CCcEEEEc--CCHHHHHHHhccCCCcEEeec-----c-------------ccCcccccChhhHHH
Q 015899 276 DIRYMTKICKLL---GLTALVEV--HDEREMDRVLGIEGIELIGIN-----N-------------RNLETFEVDNSNTKK 332 (398)
Q Consensus 276 ~L~~Li~~a~~L---GL~~LVEV--ht~eEl~rAl~l~Ga~iIGIN-----n-------------RdL~tf~vDl~~t~~ 332 (398)
.++.+..+++.. .+.++|+. ++.+++..+++.-|.++.||- + +|.....+..+...+
T Consensus 189 ~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~ 268 (352)
T PRK07188 189 VVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKA 268 (352)
T ss_pred HHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHH
Confidence 345555555543 24445553 277887777764388897771 1 112222344555566
Q ss_pred HhhhhcccccccCCceEEEecCCCCHHHHHHHHHcC--CCEEEEcccccCCC
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG--VKAVLVGESIVKQD 382 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G--adaVLVGeaLmk~~ 382 (398)
+...+....+ .++.+++.||| +++.++.+.+.| +|++=||++|...+
T Consensus 269 vr~~Ld~~g~--~~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~~~ 317 (352)
T PRK07188 269 LRKALDENGG--KHVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLKIN 317 (352)
T ss_pred HHHHHhhCCC--CCcEEEEeCCC-CHHHHHHHHHcCCCccEEecCcccccCc
Confidence 5554322111 46789999999 899999999999 69999999999964
No 361
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.16 Score=51.45 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecc--CCcCCC--CHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHH-cCcCEEEEe
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTD--EKYFKG--SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYART-KGADAVLLI 268 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd--~~~F~G--s~edL~~Ir~a~v~-lPVL~KDFIid~~QI~eAr~-~GADaVLLi 268 (398)
.+....++|+..+++|+++|.|-.- ...|.| +++.+..+|+. ++ +||+..+-|.++.+..+..+ .|||+|.+.
T Consensus 150 ~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~-~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 150 DDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEA-VPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred ccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHh-CCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 3346788999999999999998743 344555 88999999987 77 99999888889988887765 589999998
Q ss_pred ccCCChHHHHH
Q 015899 269 AAVLPDLDIRY 279 (398)
Q Consensus 269 aaiL~~~~L~~ 279 (398)
=..+.+..|-.
T Consensus 229 Rga~~nP~l~~ 239 (323)
T COG0042 229 RGALGNPWLFR 239 (323)
T ss_pred HHHccCCcHHH
Confidence 88887655433
No 362
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=94.48 E-value=0.11 Score=53.85 Aligned_cols=72 Identities=24% Similarity=0.159 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCC---------------HHHHHHHHhc------CCCCcEEeccccCCHHHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGS---------------FENLEAVRSA------GVKCPLLCKEFIVDAWQIYY 256 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs---------------~edL~~Ir~a------~v~lPVL~KDFIid~~QI~e 256 (398)
++.+++++.+.+|+++|.|=. ..+|+ ..-|..++++ ..++||+.-..|.++.++..
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG---~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~k 302 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDG---AEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAK 302 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeC---CCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHH
Confidence 788999999999999999842 32222 2233344332 12699999999999999999
Q ss_pred HHHcCcCEEEEeccCC
Q 015899 257 ARTKGADAVLLIAAVL 272 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL 272 (398)
|.++|||+|-+....|
T Consensus 303 alaLGAd~V~ig~~~l 318 (392)
T cd02808 303 ALALGADAVGIGTAAL 318 (392)
T ss_pred HHHcCCCeeeechHHH
Confidence 9999999999988776
No 363
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.47 E-value=0.23 Score=45.68 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCC----------CHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHHcCcCEEE
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKG----------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVL 266 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~G----------s~edL~~Ir~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVL 266 (398)
++.+..+++ +.||+.|-+- .+|.+ +++.++.+++. .+ +||+.-+.| ++..+.++..+|||+|.
T Consensus 113 t~~e~~~a~-~~gaD~v~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 113 TLEEAAAAL-AAGADYVGVG---PIFPTPTKKDAKAPQGLEGLREIRAA-VGDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred CHHHHHHHh-HcCCCEEEEC---CccCCCCCCCCCCCCCHHHHHHHHHh-cCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 566655555 5689999652 34433 37899999876 56 999877664 88999999999999999
Q ss_pred EeccCCChHHHHHHHH
Q 015899 267 LIAAVLPDLDIRYMTK 282 (398)
Q Consensus 267 LiaaiL~~~~L~~Li~ 282 (398)
++.++...++..+.++
T Consensus 187 ~gs~i~~~~d~~~~~~ 202 (212)
T PRK00043 187 VVSAITGAEDPEAAAR 202 (212)
T ss_pred EeHHhhcCCCHHHHHH
Confidence 9988875444444433
No 364
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.45 E-value=0.16 Score=50.40 Aligned_cols=80 Identities=28% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccC---CcC---------CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CcC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDE---KYF---------KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GAD 263 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~---~~F---------~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~-GAD 263 (398)
.+..++++.+++.|++.|+|-.-. ..+ .-.++.++.+|+. +++||+.-..|.++.++.++... |||
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g~aD 306 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEGKAD 306 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCCCCC
Confidence 356788999999999999875311 111 1234677888887 89999999999999999999988 899
Q ss_pred EEEEeccCCChHHH
Q 015899 264 AVLLIAAVLPDLDI 277 (398)
Q Consensus 264 aVLLiaaiL~~~~L 277 (398)
.|.+.-.++.+.++
T Consensus 307 ~V~igR~~ladP~l 320 (327)
T cd02803 307 LVALGRALLADPDL 320 (327)
T ss_pred eeeecHHHHhCccH
Confidence 99998887766554
No 365
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.45 E-value=0.21 Score=46.87 Aligned_cols=77 Identities=21% Similarity=0.125 Sum_probs=58.2
Q ss_pred HHHHHHcCCcEEEEe-ccCCcCCCCHHHHHHHHhcC-CCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHH
Q 015899 203 ARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAG-VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279 (398)
Q Consensus 203 A~aY~~~GA~aISVL-Td~~~F~Gs~edL~~Ir~a~-v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~ 279 (398)
++.+.+.|++.+.+- +|...|.=+++.+..+++.. .++||+.-..|.++.++.++..+|||+|+++.++....+..+
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~ 212 (217)
T cd00331 134 LERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGA 212 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHH
Confidence 555667799999764 12234555677788887641 368999999999999999999999999999999886554433
No 366
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.41 E-value=0.075 Score=50.82 Aligned_cols=95 Identities=16% Similarity=0.220 Sum_probs=60.6
Q ss_pred EEEcCCHHHHHHHhccCCCcEEeeccc--cCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCC
Q 015899 292 LVEVHDEREMDRVLGIEGIELIGINNR--NLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGV 369 (398)
Q Consensus 292 LVEVht~eEl~rAl~l~Ga~iIGINnR--dL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Ga 369 (398)
.+...|+.++-+.....|++-+=|-.- -.+.-..+++...++++. ..+++-.-|||.+.+|++++.++||
T Consensus 25 ~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~--------~~~~i~vgGGIrs~ed~~~ll~~Ga 96 (229)
T PF00977_consen 25 TVYSGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKE--------TGIPIQVGGGIRSIEDAERLLDAGA 96 (229)
T ss_dssp ECECCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHH--------SSSEEEEESSE-SHHHHHHHHHTT-
T ss_pred eEECcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhc--------CCccEEEeCccCcHHHHHHHHHhCC
Confidence 344456666665554446664433211 111112234444555554 3578999999999999999999999
Q ss_pred CEEEEcccccCCCChHHHHHhhhcC
Q 015899 370 KAVLVGESIVKQDDPGKGITGLFGK 394 (398)
Q Consensus 370 daVLVGeaLmk~~dp~~~i~~L~~~ 394 (398)
+.|+||++..+.++..+.+.+-++.
T Consensus 97 ~~Vvigt~~~~~~~~l~~~~~~~g~ 121 (229)
T PF00977_consen 97 DRVVIGTEALEDPELLEELAERYGS 121 (229)
T ss_dssp SEEEESHHHHHCCHHHHHHHHHHGG
T ss_pred CEEEeChHHhhchhHHHHHHHHcCc
Confidence 9999999999888877776666553
No 367
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.41 E-value=0.26 Score=47.32 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCcC---CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTDEKYF---KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd~~~F---~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
...+|.++++.|.+. +..+.+++-..-. +-+++.++.+.+. +++||+.-..|.+..++.++...||++|++..++
T Consensus 144 ~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal 221 (233)
T cd04723 144 DFIGPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALVASAL 221 (233)
T ss_pred CcCCHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHH
Confidence 467899999999999 9999987554332 2356777888876 8999999999999999999999999999998877
Q ss_pred CCh
Q 015899 272 LPD 274 (398)
Q Consensus 272 L~~ 274 (398)
...
T Consensus 222 ~~g 224 (233)
T cd04723 222 HDG 224 (233)
T ss_pred HcC
Confidence 643
No 368
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=94.35 E-value=0.05 Score=52.98 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=90.5
Q ss_pred HHHHHHhc--CCCCcEEecccc-------CCHHHHHHHHHcCcCEEEEeccC------CChHHHHHHHHHHHHcCCcEEE
Q 015899 229 NLEAVRSA--GVKCPLLCKEFI-------VDAWQIYYARTKGADAVLLIAAV------LPDLDIRYMTKICKLLGLTALV 293 (398)
Q Consensus 229 dL~~Ir~a--~v~lPVL~KDFI-------id~~QI~eAr~~GADaVLLiaai------L~~~~L~~Li~~a~~LGL~~LV 293 (398)
+|..+++. ..+++|-..|.= +-+......+.+|++.|+++.+= -+++.+..=++.|.+.||.+++
T Consensus 43 ~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGevS~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIv 122 (244)
T PF00121_consen 43 YLSSVSKILKGSNIKIGAQNVSPEDSGAFTGEVSAEMLKDLGCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIV 122 (244)
T ss_dssp GHHHHHHHHTTTTSEEEESS-BSSSSBS-TTHHBHHHHHHTTESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHhhccCCeEEEecccccchhhcccHHHhHHHHHHHhhCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEE
Confidence 66666543 246777766521 11223445577899999999983 2577788888999999999999
Q ss_pred EcCC-HHH-------------HHHHhccCC-----CcEEeecccc-C-cccccChhhHHHHhhhhcccc---c---ccCC
Q 015899 294 EVHD-ERE-------------MDRVLGIEG-----IELIGINNRN-L-ETFEVDNSNTKKLLEGERGEI---I---RQKN 346 (398)
Q Consensus 294 EVht-~eE-------------l~rAl~l~G-----a~iIGINnRd-L-~tf~vDl~~t~~L~~~i~~~~---i---~~~~ 346 (398)
+|-. +++ ++.++.--+ .-+|..-..= . +.-..+.+...+....+|.-. + ...+
T Consensus 123 CvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~~~~~~iIAYEPvWAIGtG~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~ 202 (244)
T PF00121_consen 123 CVGETLEERESGKTKEVLKRQLKSILKGIDKEELKNIIIAYEPVWAIGTGKTASPEQIQEVHAFIREILAELYGEEVANN 202 (244)
T ss_dssp EESSBHHHHHTTCHHHHHHHHHHHHHTTSSGGGGTCEEEEEEEGGGTSSSS-CCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred EeccchhhhhcCcHHHHHHHHHHHHHhccccccccceEEEEcccccccCCCCCCHHHHHHHHHHHHHHHHHhccccccCc
Confidence 9987 222 222222101 1233221000 0 011223444443333322210 0 0235
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChH
Q 015899 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPG 385 (398)
Q Consensus 347 v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~ 385 (398)
+.++-.|+++.-.....+...++||+|||.+-++.++..
T Consensus 203 ~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~F~ 241 (244)
T PF00121_consen 203 IRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAESFL 241 (244)
T ss_dssp SEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHHHH
T ss_pred eeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccchh
Confidence 789999999666666667788999999999998876544
No 369
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.34 E-value=0.9 Score=50.86 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred CceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCC-hHHHHHhh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDD-PGKGITGL 391 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~d-p~~~i~~L 391 (398)
+++|++-|+|.++++++++.+.| +|.|.+|..++..|+ +.+.+.+|
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~ 734 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEI 734 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHc
Confidence 67899999999999999999876 999999999999984 56666655
No 370
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.27 E-value=5.3 Score=39.07 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC---
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (398)
.-||++.|...+++||+.|-|---+.--.=..+|+..+|+. +..|+=- +.-.++..+.-|...-.|.|.|.-.-.
T Consensus 20 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~lNl-E~a~t~em~~ia~~~kP~~vtLVPEkr~E~ 97 (234)
T cd00003 20 YPDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLREL-VRTELNL-EMAPTEEMLEIALEVKPHQVTLVPEKREEL 97 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHH-cCCCEEe-ccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 45899999999999999999975555555578899999986 6666522 222466678889999999999975532
Q ss_pred ----------ChHHHHHHHHHHHHcCCcEEEEc-CCHHHHHHHhccCCCcEEeeccccCcccccC------hhhHHHHhh
Q 015899 273 ----------PDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGINNRNLETFEVD------NSNTKKLLE 335 (398)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~~LVEV-ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vD------l~~t~~L~~ 335 (398)
..+.|+..++..+..|+.+=+=+ -+.+.++.|.++ ||+.|=+..-.|...... ++.....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~-GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~ 176 (234)
T cd00003 98 TTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEV-GADRVELHTGPYANAYDKAEREAELERIAKAAK 176 (234)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh-CcCEEEEechhhhcCCCchhHHHHHHHHHHHHH
Confidence 23458889999999999884444 589999999998 999987754333222111 111111111
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVK 380 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk 380 (398)
. ...-++.|-|.-|+ +.+.+..+... +..-+=||-+|+.
T Consensus 177 ~-----a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 177 L-----ARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred H-----HHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence 1 11246778888888 77778777654 7788888888874
No 371
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=94.24 E-value=0.21 Score=50.02 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCcCEEEEeccCCC---hHH-HHHHHHHHHHcCCcEEEEcC
Q 015899 223 FKGSFENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLP---DLD-IRYMTKICKLLGLTALVEVH 296 (398)
Q Consensus 223 F~Gs~edL~~Ir~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~---~~~-L~~Li~~a~~LGL~~LVEVh 296 (398)
.+-+++.|+.+++. ..+||+ +-..|-+|.++.++..+|||+|+++.++.. +.. .+.|.+..... .
T Consensus 188 ~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~--------~ 258 (293)
T PRK04180 188 LQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY--------D 258 (293)
T ss_pred cCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc--------C
Confidence 34588999999886 799997 888878999999999999999999999972 322 55555544333 2
Q ss_pred CHHHHHHHh-ccCCCcEEeeccccC
Q 015899 297 DEREMDRVL-GIEGIELIGINNRNL 320 (398)
Q Consensus 297 t~eEl~rAl-~l~Ga~iIGINnRdL 320 (398)
|++-+..+- .+ |-.+.|+|.+.+
T Consensus 259 ~~~~~~~~s~~~-~~~m~g~~~~~~ 282 (293)
T PRK04180 259 DPEVLAEVSKGL-GEAMVGIDIDEL 282 (293)
T ss_pred CHHHHHHHHccc-ccccCCCccccC
Confidence 333333332 33 556888887666
No 372
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=94.23 E-value=0.74 Score=43.64 Aligned_cols=145 Identities=15% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCHHHHHHHHhcCCCCcEEe--c--cccCCH-HHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHc--CCcEEEEcCC
Q 015899 225 GSFENLEAVRSAGVKCPLLC--K--EFIVDA-WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL--GLTALVEVHD 297 (398)
Q Consensus 225 Gs~edL~~Ir~a~v~lPVL~--K--DFIid~-~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~L--GL~~LVEVht 297 (398)
.+.+-++.+|+. ..||+. | |..-+. .++..+...|||++.+.+ ....+.++.+++.++.. ++-++++..|
T Consensus 37 ~g~~~i~~l~~~--~~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~-~~G~~~l~~~~~~~~~~~~~~~~v~~lss 113 (216)
T cd04725 37 AGPEIVKELREL--GFLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHP-YGGSDMLKAALEAAEEKGKGLFAVTVLSS 113 (216)
T ss_pred cCHHHHHHHHHC--CCcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECC-cCCHHHHHHHHHHHhccCCeEEEEEcCCC
Confidence 466788888875 478873 3 422111 233445678999998854 55666799999988854 4566777776
Q ss_pred HHHH--HH----------------HhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCH-
Q 015899 298 EREM--DR----------------VLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTP- 358 (398)
Q Consensus 298 ~eEl--~r----------------Al~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~- 358 (398)
..+. +. |.+. | +.|+ -..-.....+.+. . ..+.+ +--.||.-.
T Consensus 114 ~~~~~~q~~~~~~~~~~~~~~~~~a~~~-g--~~G~--------V~~~~~~~~i~~~-----~-~~~~~-~ltPGI~~~~ 175 (216)
T cd04725 114 PGALDLQEGIPGSLEDLVERLAKLAREA-G--VDGV--------VCGATEPEALRRA-----L-GPDFL-ILTPGIGAQG 175 (216)
T ss_pred CCHHHHHhhhcCCHHHHHHHHHHHHHHH-C--CCEE--------EECCcchHHHHHh-----h-CCCCe-EEcCCcCCCC
Confidence 5442 11 1111 1 1111 1111111112111 1 12433 556788532
Q ss_pred --------HHHHHHHHcCCCEEEEcccccCCCChHHHHHh
Q 015899 359 --------DDIAYVQEAGVKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 359 --------eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~ 390 (398)
.+...+..+|++.+.||.+|+.++||.+++++
T Consensus 176 ~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 176 SGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred CccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 15666778899999999999999999998875
No 373
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=94.20 E-value=0.18 Score=49.70 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=57.3
Q ss_pred HHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEccc
Q 015899 298 EREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGES 377 (398)
Q Consensus 298 ~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGea 377 (398)
.+-+++..+ .|++.|=+- || .-. +.+...++++. .++++...|||++ ++++.+.++||+.|.||++
T Consensus 41 ~~~A~~~~~-~Ga~~lHvV--DL-g~~-n~~~i~~i~~~--------~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~ 106 (253)
T TIGR02129 41 SYYAKLYKD-DGVKGCHVI--ML-GPN-NDDAAKEALHA--------YPGGLQVGGGIND-TNAQEWLDEGASHVIVTSW 106 (253)
T ss_pred HHHHHHHHH-cCCCEEEEE--EC-CCC-cHHHHHHHHHh--------CCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcH
Confidence 344455555 488776553 45 222 55566666654 3578999999997 9999999999999999999
Q ss_pred ccCC----CChHHHHHhhhc
Q 015899 378 IVKQ----DDPGKGITGLFG 393 (398)
Q Consensus 378 Lmk~----~dp~~~i~~L~~ 393 (398)
+++. ++..+.+.+.+|
T Consensus 107 av~~~~i~~~~~~~i~~~fG 126 (253)
T TIGR02129 107 LFTKGKFDLKRLKEIVSLVG 126 (253)
T ss_pred HHhCCCCCHHHHHHHHHHhC
Confidence 9886 334455555553
No 374
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.17 E-value=0.34 Score=43.39 Aligned_cols=81 Identities=21% Similarity=0.097 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHcCCcEEEEec------cCCc-CCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 198 DPVEIARSYEKGGAACLSILT------DEKY-FKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT------d~~~-F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
++.+ ++.+.+.|++.|-+.. .+.+ ...+++.++.+++. .++||+.-+.| ++..+.+++.+|||+|.++..
T Consensus 104 t~~~-~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~ 180 (196)
T cd00564 104 SLEE-ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAGADGVAVISA 180 (196)
T ss_pred CHHH-HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEehH
Confidence 3444 5556677999997631 2222 34567889988876 78999877664 788999999999999999998
Q ss_pred CCChHHHHHHH
Q 015899 271 VLPDLDIRYMT 281 (398)
Q Consensus 271 iL~~~~L~~Li 281 (398)
++..++..+.+
T Consensus 181 i~~~~~~~~~~ 191 (196)
T cd00564 181 ITGADDPAAAA 191 (196)
T ss_pred hhcCCCHHHHH
Confidence 87544433333
No 375
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.16 E-value=6.6 Score=38.97 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCcEEEEec--cCCcCCCCHHHHHHH---Hhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEEe
Q 015899 199 PVEIARSYEKGGAACLSILT--DEKYFKGSFENLEAV---RSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLT--d~~~F~Gs~edL~~I---r~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (398)
..++.+.+...|+++|-++- -+.+.--.-|..+.+ ++. .-.+||+..=.-.+.. ....|...|||+|+++
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 34556778889999998862 222221122222222 221 1368998544333332 3445678899999998
Q ss_pred ccCC---ChHH-HHHHHHHHHHc-CCcEEEE-----c---CCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhh
Q 015899 269 AAVL---PDLD-IRYMTKICKLL-GLTALVE-----V---HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 269 aaiL---~~~~-L~~Li~~a~~L-GL~~LVE-----V---ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~ 335 (398)
.-.. ++++ +.++...|... ++.+++= . -+.+.+.+..+- -..++||-.. ..|+....+++.
T Consensus 103 pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~-~pnv~giK~s-----s~d~~~~~~~~~ 176 (294)
T TIGR02313 103 VPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKD-CPNIVGAKES-----NKDFEHLNHLFL 176 (294)
T ss_pred CccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhh-CCCEEEEEeC-----CCCHHHHHHHHH
Confidence 8754 3333 55566667777 7887653 1 146666666531 3579998742 346777677655
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhh
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L 391 (398)
.. +.+..+. +|-. +.+-....+|++|++.|-+=+-++-..+..+.+
T Consensus 177 ~~------~~~~~v~--~G~d--~~~~~~l~~Ga~G~is~~~n~~P~~~~~l~~~~ 222 (294)
T TIGR02313 177 EA------GRDFLLF--CGIE--LLCLPMLAIGAAGSIAATANVEPKEVAELCEAA 222 (294)
T ss_pred hc------CCCeEEE--Ecch--HHHHHHHHCCCCEEEecHHhhCHHHHHHHHHHH
Confidence 41 2343332 3332 334456689999999998765544433333333
No 376
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.14 E-value=0.31 Score=47.32 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=86.8
Q ss_pred cHHHHHHhhhhcCCCceEEEEeccCC-CCCCCCC-CCCCHHHHHHHHHHcCCcEEEEe---ccCCcCCCCHHHHHHHHhc
Q 015899 162 DFIGALMAANQRTGLPALIAEVKKAS-PSRGILR-EDFDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSA 236 (398)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraS-PSkG~i~-~~~dp~~iA~aY~~~GA~aISVL---Td~~~F~Gs~edL~~Ir~a 236 (398)
+|...+.+ . ..++.+=..+|+-. -++|+.. ...+|.++++.+++.|+..|=+. .|-..-+-+++.++.+++.
T Consensus 110 ~~l~~~~~-~--~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~ 186 (241)
T PRK14114 110 SFLKFLKE-I--DVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIE 186 (241)
T ss_pred HHHHHHHH-h--CCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHH
Confidence 46666643 2 23555556666542 1346554 67899999999999999877554 4445555688999999987
Q ss_pred CCCCcEEeccccCCHHHHHHHHHc-----C-cCEEEEeccCCChH-HHHHHHHHH
Q 015899 237 GVKCPLLCKEFIVDAWQIYYARTK-----G-ADAVLLIAAVLPDL-DIRYMTKIC 284 (398)
Q Consensus 237 ~v~lPVL~KDFIid~~QI~eAr~~-----G-ADaVLLiaaiL~~~-~L~~Li~~a 284 (398)
+++||+.-..+-+...+.++... | ++++++..++.+.. +++++.+++
T Consensus 187 -~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~~~ 240 (241)
T PRK14114 187 -AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_pred -CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHHhh
Confidence 89999999999999999998886 6 99999988876542 356655543
No 377
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=94.13 E-value=0.72 Score=44.60 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCc-EEeccccCCHHHHHHHHHcCcCEEEEeccCC--
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP-LLCKEFIVDAWQIYYARTKGADAVLLIAAVL-- 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lP-VL~KDFIid~~QI~eAr~~GADaVLLiaaiL-- 272 (398)
-.+|..+...|.++||+.|++-.| ...--..-|+.||+.++..= +|+.+ +|.+.++....-+|.||+++--=
T Consensus 70 V~~p~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~---Tp~~~i~~~l~~vD~VllMsVnPGf 144 (220)
T COG0036 70 VENPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPA---TPLEALEPVLDDVDLVLLMSVNPGF 144 (220)
T ss_pred cCCHHHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCC---CCHHHHHHHHhhCCEEEEEeECCCC
Confidence 347899999999999999999887 34445677888887643222 45666 66777777778999999987531
Q ss_pred -----ChHH---HHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEEeec
Q 015899 273 -----PDLD---IRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 273 -----~~~~---L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iIGIN 316 (398)
-++. ++++-++..+.| +.++||. |.+-+..+..+ ||+++-..
T Consensus 145 gGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~A-Gad~~VaG 197 (220)
T COG0036 145 GGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAA-GADVFVAG 197 (220)
T ss_pred cccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHc-CCCEEEEE
Confidence 1222 333333333345 7788875 66666666665 77665444
No 378
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.12 E-value=6.6 Score=38.79 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCcEEEEe-ccCCcCCCCHHH-HHH---HHhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEEe
Q 015899 199 PVEIARSYEKGGAACLSIL-TDEKYFKGSFEN-LEA---VRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVL-Td~~~F~Gs~ed-L~~---Ir~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (398)
..++.+.+.+.|+++|-|+ |--+|+.=+.+. .+. +.+. .-.+||+..=.- +.. ....|..+|||+|+++
T Consensus 23 l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~ 101 (289)
T cd00951 23 YRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLL 101 (289)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEEC
Confidence 3456778889999999987 112222223332 222 2332 136899864322 332 2445678999999998
Q ss_pred ccCC---ChHH-HHHHHHHHHHcCCcEEEEc-----CCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcc
Q 015899 269 AAVL---PDLD-IRYMTKICKLLGLTALVEV-----HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG 339 (398)
Q Consensus 269 aaiL---~~~~-L~~Li~~a~~LGL~~LVEV-----ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~ 339 (398)
.-.. +++. .+++-..+...++.+++=- =+.+.+.+..+- -..++||-.. .-|+....+++...
T Consensus 102 pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgiKds-----~~d~~~~~~~~~~~-- 173 (289)
T cd00951 102 PPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAER-CPNLVGFKDG-----VGDIELMRRIVAKL-- 173 (289)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEEEeC-----CCCHHHHHHHHHhc--
Confidence 7654 4444 4455555666677765531 145666665551 3579999643 34677777776541
Q ss_pred cccccCCceEEEecCCCCHHH-HHHHHHcCCCEEEEcccccCCCCh
Q 015899 340 EIIRQKNIIVVGESGLFTPDD-IAYVQEAGVKAVLVGESIVKQDDP 384 (398)
Q Consensus 340 ~~i~~~~v~vVAESGI~t~eD-~~~l~~~GadaVLVGeaLmk~~dp 384 (398)
+.+..+ -+|-.+-+. +-....+|++|++-|.+=+-++..
T Consensus 174 ----~~~~~v--~~G~~~~d~~~~~~l~~Ga~G~is~~~n~~P~~~ 213 (289)
T cd00951 174 ----GDRLLY--LGGLPTAEVFALAYLAMGVPTYSSAVFNFVPEIA 213 (289)
T ss_pred ----CCCeEE--EeCCCcchHhHHHHHHCCCCEEEechhhhhHHHH
Confidence 233332 334333333 456678899999988665544433
No 379
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.06 E-value=0.9 Score=43.34 Aligned_cols=114 Identities=17% Similarity=0.255 Sum_probs=72.0
Q ss_pred CCcEEeccccCCHHHHHHH-HHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---CCHHHHHHHhccCCCcEEe
Q 015899 239 KCPLLCKEFIVDAWQIYYA-RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV---HDEREMDRVLGIEGIELIG 314 (398)
Q Consensus 239 ~lPVL~KDFIid~~QI~eA-r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV---ht~eEl~rAl~l~Ga~iIG 314 (398)
=+||+|.+=.-+-.++.++ .+.|...|=+- ..++..++.+-+..++.+ +++|-+ -|.++++.+.++ |+++|-
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit--~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~a-GA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVT--LRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDA-GAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEe--CCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHc-CCCEEE
Confidence 4788887733333455555 56678876553 344444554444444554 565554 589999999997 999884
Q ss_pred eccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 315 INNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 315 INnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.-+. |. ++++..+ ..+++.+- |+.||.++..+.++|++.|=+
T Consensus 86 sP~~-------~~----~v~~~~~-----~~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 86 SPGL-------TP----ELAKHAQ-----DHGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred CCCC-------CH----HHHHHHH-----HcCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 4332 22 2333211 13555544 999999999999999998743
No 380
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.98 E-value=0.17 Score=52.14 Aligned_cols=91 Identities=23% Similarity=0.174 Sum_probs=64.4
Q ss_pred EEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCC-----CCHHHHHHHHhcCCCCcEEeccccCCHHH
Q 015899 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFK-----GSFENLEAVRSAGVKCPLLCKEFIVDAWQ 253 (398)
Q Consensus 179 vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~-----Gs~edL~~Ir~a~v~lPVL~KDFIid~~Q 253 (398)
-|.++++..|-.=++..-.++ +-|+...+.||++|-|- .-+.-+ ..++-|..++++ +++||+....|.....
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~-eda~~a~~~G~d~I~VS-nhGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g~D 303 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTA-EDAKRCIELGADGVILS-NHGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRGSD 303 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCH-HHHHHHHHCCcCEEEEC-CCCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCHHH
Confidence 355666665543233333444 45666777899999873 111111 136677788886 7899999999999999
Q ss_pred HHHHHHcCcCEEEEeccCC
Q 015899 254 IYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL 272 (398)
|..|.++|||+|.+.-.+|
T Consensus 304 v~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 304 IVKALALGANAVLLGRATL 322 (361)
T ss_pred HHHHHHcCCCEEEECHHHH
Confidence 9999999999999988776
No 381
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.91 E-value=0.6 Score=46.79 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=90.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHH-HHHHcCCcE--E--E--EeccCCc--CCCCH-H
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR-SYEKGGAAC--L--S--ILTDEKY--FKGSF-E 228 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~-aY~~~GA~a--I--S--VLTd~~~--F~Gs~-e 228 (398)
.++.|.+++.+ ....|+-=.|..|-- + .+++ +..-||+.- + | ||--+++ |-|++ +
T Consensus 124 ~t~~~v~~~~~------~~~~i~~TRKT~Pg~---R------~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ 188 (289)
T PRK07896 124 ATAAWVDAVAG------TKAKIRDTRKTLPGL---R------ALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVA 188 (289)
T ss_pred HHHHHHHHhcC------CCeEEEecCCCCCcc---h------HHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHH
Confidence 35667777732 336788887777852 2 2222 223344321 1 1 3322221 23454 5
Q ss_pred HHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHH
Q 015899 229 NLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (398)
Q Consensus 229 dL~~Ir~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~r 303 (398)
-++.+|+.....||. +. +..|..+|..+|||.|+|+ -++++++++.++..+..+-.+.+|++ |++.+..
T Consensus 189 ai~~~r~~~~~~kIeVEv~----tl~ea~eal~~gaDiI~LD--nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~ 262 (289)
T PRK07896 189 ALRAVRAAAPDLPCEVEVD----SLEQLDEVLAEGAELVLLD--NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAA 262 (289)
T ss_pred HHHHHHHhCCCCCEEEEcC----CHHHHHHHHHcCCCEEEeC--CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 677777642234433 32 4468999999999999998 47788999999987777888999998 8888888
Q ss_pred HhccCCCcEEeecc
Q 015899 304 VLGIEGIELIGINN 317 (398)
Q Consensus 304 Al~l~Ga~iIGINn 317 (398)
..+. |+|+|++..
T Consensus 263 yA~t-GvD~Is~ga 275 (289)
T PRK07896 263 YAET-GVDYLAVGA 275 (289)
T ss_pred HHhc-CCCEEEeCh
Confidence 8886 999999974
No 382
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.84 E-value=0.32 Score=47.56 Aligned_cols=83 Identities=23% Similarity=0.209 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHcCCcEEEEec-cCCcCCCCHHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT-d~~~F~Gs~edL~~Ir~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
+..+..+ ..+.||+.|.+.. |-..|.=+++....+.+. + +.|+++-..|.++.++.+++.+|||+|+++.++...
T Consensus 169 ~~~E~~~-A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~-~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 169 DEEELER-ALKLGAPLIGINNRNLKTFEVDLETTERLAPL-IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CHHHHHH-HHHcCCCEEEECCCCcccccCCHHHHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 4445533 4467999999863 223566677778877764 3 358999999999999999999999999999998876
Q ss_pred HHHHHHHH
Q 015899 275 LDIRYMTK 282 (398)
Q Consensus 275 ~~L~~Li~ 282 (398)
++..+.++
T Consensus 247 ~dp~~~~~ 254 (260)
T PRK00278 247 DDPGAALR 254 (260)
T ss_pred CCHHHHHH
Confidence 55544443
No 383
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=93.82 E-value=0.33 Score=47.08 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=60.2
Q ss_pred HHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccC--C----HHHHHHHHHcCcCEEEEeccCCChHH
Q 015899 203 ARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIV--D----AWQIYYARTKGADAVLLIAAVLPDLD 276 (398)
Q Consensus 203 A~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIi--d----~~QI~eAr~~GADaVLLiaaiL~~~~ 276 (398)
++.+.+.||+.|-+ .|.|+++.|+.+.+. +.+||+.=..|. + ...+.+++.+||+.|..+..++..++
T Consensus 162 ~~~a~~~GADyikt-----~~~~~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 162 ARLGAELGADIVKT-----PYTGDIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred HHHHHHHCCCEEec-----cCCCCHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 57788899999996 266899999999875 789998866665 3 44677888999999999999886555
Q ss_pred HHHHHHHHHH
Q 015899 277 IRYMTKICKL 286 (398)
Q Consensus 277 L~~Li~~a~~ 286 (398)
....++..+.
T Consensus 236 p~~~~~~l~~ 245 (258)
T TIGR01949 236 PVGITKAVCK 245 (258)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 384
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.81 E-value=0.63 Score=43.02 Aligned_cols=103 Identities=20% Similarity=0.100 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHH
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYM 280 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~L 280 (398)
+.+..+.+.||..|+. .|+..++...++. .+.|++- .+.++.|+.+|..+|||.|.+...-.. ..++
T Consensus 67 ~~~~~a~~~Ga~~i~~-------p~~~~~~~~~~~~-~~~~~i~--gv~t~~e~~~A~~~Gad~i~~~p~~~~---g~~~ 133 (190)
T cd00452 67 EQADAAIAAGAQFIVS-------PGLDPEVVKAANR-AGIPLLP--GVATPTEIMQALELGADIVKLFPAEAV---GPAY 133 (190)
T ss_pred HHHHHHHHcCCCEEEc-------CCCCHHHHHHHHH-cCCcEEC--CcCCHHHHHHHHHCCCCEEEEcCCccc---CHHH
Confidence 4556677789999974 3455566666654 5788775 234889999999999999998642211 2333
Q ss_pred HHHHHH-c-CCcEEEEc-CCHHHHHHHhccCCCcEEeecc
Q 015899 281 TKICKL-L-GLTALVEV-HDEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 281 i~~a~~-L-GL~~LVEV-ht~eEl~rAl~l~Ga~iIGINn 317 (398)
++..+. + ++..++.= =|.+.+...++. |++.|++.+
T Consensus 134 ~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~-G~~~v~v~s 172 (190)
T cd00452 134 IKALKGPFPQVRFMPTGGVSLDNAAEWLAA-GVVAVGGGS 172 (190)
T ss_pred HHHHHhhCCCCeEEEeCCCCHHHHHHHHHC-CCEEEEEch
Confidence 343332 3 34444431 188999999997 999888874
No 385
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=93.80 E-value=7.3 Score=38.23 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC---
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (398)
.-||++.|...+++||..|-|---+.--.=..+|+..+++. +..|+=- ..-.++.-+.-|+..-.|.|.|.-.-.
T Consensus 23 ~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~lNl-E~a~~~em~~ia~~~kP~~vtLVPE~r~E~ 100 (239)
T PRK05265 23 YPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRET-LKTELNL-EMAATEEMLDIALEVKPHQVTLVPEKREEL 100 (239)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHh-cCCCEEe-ccCCCHHHHHHHHHCCCCEEEECCCCCCCc
Confidence 45899999999999999999975555555678899999986 6666522 222455678889999999999975532
Q ss_pred ----------ChHHHHHHHHHHHHcCCcE--EEEcCCHHHHHHHhccCCCcEEeeccccCccc-cc----ChhhHHHHhh
Q 015899 273 ----------PDLDIRYMTKICKLLGLTA--LVEVHDEREMDRVLGIEGIELIGINNRNLETF-EV----DNSNTKKLLE 335 (398)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~~--LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf-~v----Dl~~t~~L~~ 335 (398)
..+.|+..++..+..|+.+ ++| -+.+.++.|.++ ||+.|=.-.-.|... .- .++.....+.
T Consensus 101 TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~-GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~ 178 (239)
T PRK05265 101 TTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEV-GADRIELHTGPYADAKTEAEAAELERIAKAAK 178 (239)
T ss_pred cCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHh-CcCEEEEechhhhcCCCcchHHHHHHHHHHHH
Confidence 2345888899999999766 555 799999999998 999987653333221 11 1222111111
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVK 380 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk 380 (398)
. ...-++-|-|.-|+ +.+.+..+... +..-+=||-+|+.
T Consensus 179 ~-----a~~lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia 218 (239)
T PRK05265 179 L-----AASLGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIA 218 (239)
T ss_pred H-----HHHcCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHH
Confidence 1 11246778888888 78888887663 7788889988874
No 386
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.79 E-value=0.31 Score=49.19 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccC---CcCCC---------CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCE
Q 015899 197 FDPVEIARSYEKGGAACLSILTDE---KYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADA 264 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~---~~F~G---------s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADa 264 (398)
.+..++++.++++|+++|.|-.-. +.|.| .++.+.++++...++||+.-+-|.+..++.+... |||+
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dg 219 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDG 219 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCE
Confidence 356788999999999999887543 33444 3566777777623899998888899988888775 9999
Q ss_pred EEEeccCCChHHH
Q 015899 265 VLLIAAVLPDLDI 277 (398)
Q Consensus 265 VLLiaaiL~~~~L 277 (398)
|.+.-.+|.+..+
T Consensus 220 VMigRgal~nP~i 232 (318)
T TIGR00742 220 VMVGREAYENPYL 232 (318)
T ss_pred EEECHHHHhCCHH
Confidence 9998888876553
No 387
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.77 E-value=0.23 Score=46.66 Aligned_cols=72 Identities=32% Similarity=0.316 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCcEEEEecc-CCcC-----CCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTD-EKYF-----KGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd-~~~F-----~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+.++.+.+.||+.|.+..- .... ...++.++.+++. +++||+.-..|.++.++.++..+|||+|.+..+++.
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~ 190 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhc
Confidence 5567777789998876321 0000 1235688888886 799999877777889999999999999999988763
No 388
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=93.69 E-value=1.7 Score=44.39 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=104.7
Q ss_pred CCceEEEEeccCCCCCCC-CCCCCC-HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHH-hcCCCCcE--EeccccC
Q 015899 175 GLPALIAEVKKASPSRGI-LREDFD-PVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVR-SAGVKCPL--LCKEFIV 249 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~-i~~~~d-p~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir-~a~v~lPV--L~KDFIi 249 (398)
.++-||||+ |. .+.+++ ..++-.+..++||++|=.=| |+. .|.-.-. .. +..|+ +..+ +
T Consensus 13 ~~~~iIAEi-------g~NHnG~le~A~~lIdaAk~aGADavKfQt---~~~---~d~~t~~~~~-~~~~i~~~~~~--~ 76 (347)
T COG2089 13 KKPFIIAEI-------GANHNGDLERAKELIDAAKEAGADAVKFQT---FYT---PDIMTLESKN-VPFKIKTLWDK--V 76 (347)
T ss_pred CCcEEEeee-------cccccCcHHHHHHHHHHHHHcCcceeeeec---ccc---cccccccccC-Ccccccccccc--c
Confidence 468899999 32 222332 34566777889999987522 121 1111111 11 22333 2444 6
Q ss_pred CHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhh
Q 015899 250 DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSN 329 (398)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~ 329 (398)
+-||+||-.+ ++.+.-..|.++|++.||..+--.-+.+.++....+ ++...=|-.-++. |+..
T Consensus 77 slyel~e~~~------------~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~-~~~ayKIaS~E~~----~~pl 139 (347)
T COG2089 77 SLYELYEEAE------------TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESL-NPPAYKIASGEIN----DLPL 139 (347)
T ss_pred cHHHHHHHhc------------CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhc-CCCeEEecCcccc----ChHH
Confidence 7788888743 566778889999999999999999999999999998 8888777654442 3444
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHH----HHHcCCCEEE
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY----VQEAGVKAVL 373 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~----l~~~GadaVL 373 (398)
.+.+++ .+.++|-..|+.+.+++.. +++.|...++
T Consensus 140 ik~iA~---------~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~ 178 (347)
T COG2089 140 IKYIAK---------KGKPIILSTGMATIEEIEEAVAILRENGNPDIA 178 (347)
T ss_pred HHHHHh---------cCCCEEEEcccccHHHHHHHHHHHHhcCCCCeE
Confidence 444444 3558999999999998865 5667887433
No 389
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.64 E-value=0.092 Score=49.48 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=78.7
Q ss_pred ccCCCCCCCCCCCCCHHHH---HHHHHHcCCcEEEEec-cCCcCCCCHHHHHHHHhc----CCCCcEEeccc-------c
Q 015899 184 KKASPSRGILREDFDPVEI---ARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSA----GVKCPLLCKEF-------I 248 (398)
Q Consensus 184 KraSPSkG~i~~~~dp~~i---A~aY~~~GA~aISVLT-d~~~F~Gs~edL~~Ir~a----~v~lPVL~KDF-------I 248 (398)
+--|.+-|... +.|... |.-..-.||+.|-|-- .-+-...-++-++.+-.+ ..+.-|..-.+ -
T Consensus 53 ~~vSAT~GDvp--YKPGT~slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgs 130 (235)
T COG1891 53 QEVSATVGDVP--YKPGTASLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGS 130 (235)
T ss_pred eeeeeeecCCC--CCCchHHHHHHHhHhhCCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccC
Confidence 33455556553 233333 3345567899999821 000001123334333222 11233443332 2
Q ss_pred CCHHHHH-HHHHcCcCEEEEeccCC---------ChHHHHHHHHHHHHcCCcE-EEEcCCHHHHHHHhccCCCcEEeec
Q 015899 249 VDAWQIY-YARTKGADAVLLIAAVL---------PDLDIRYMTKICKLLGLTA-LVEVHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 249 id~~QI~-eAr~~GADaVLLiaaiL---------~~~~L~~Li~~a~~LGL~~-LVEVht~eEl~rAl~l~Ga~iIGIN 316 (398)
++|..+- -|+.+|||.+.+++++- +.++|++|++.||+.||++ |.---..+.+...-++ |++|||+.
T Consensus 131 v~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~ehlp~l~ei-g~DivGvR 208 (235)
T COG1891 131 VSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEHLPILKEI-GPDIVGVR 208 (235)
T ss_pred cCccccHHHHHhcCCCEEEEecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhccccccccchHHHHh-CCCeeeec
Confidence 4554444 35789999999999873 5677999999999999986 4444567777777788 99999996
No 390
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.29 Score=47.80 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=65.0
Q ss_pred EcCCHHHHHHHhccCCCcEE---eeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCC
Q 015899 294 EVHDEREMDRVLGIEGIELI---GINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 370 (398)
Q Consensus 294 EVht~eEl~rAl~l~Ga~iI---GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Gad 370 (398)
++.|+-|+.+...-+||+=+ -|+.. -..-+++++...+.++.+ .+++-..|||++.+|+++++.+|||
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--------fiPltVGGGI~s~eD~~~ll~aGAD 98 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--------FIPLTVGGGIRSVEDARKLLRAGAD 98 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--------eeeeEecCCcCCHHHHHHHHHcCCC
Confidence 44566666666655577633 33311 111234566666666542 4678889999999999999999999
Q ss_pred EEEEcccccCCCChHHHHHhhhc
Q 015899 371 AVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 371 aVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
-|-|.++-++.++.-..+.+-+|
T Consensus 99 KVSINsaAv~~p~lI~~~a~~FG 121 (256)
T COG0107 99 KVSINSAAVKDPELITEAADRFG 121 (256)
T ss_pred eeeeChhHhcChHHHHHHHHHhC
Confidence 99999999999988777777776
No 391
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=93.44 E-value=0.46 Score=48.21 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=67.8
Q ss_pred CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEE---eccCCC--hHHHHHHHHHHH--HcCCcEEEE--cC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLL---IAAVLP--DLDIRYMTKICK--LLGLTALVE--VH 296 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLL---iaaiL~--~~~L~~Li~~a~--~LGL~~LVE--Vh 296 (398)
+.+||+-+|.. +++||+.|+. ........|.++|+++|++ +++-|+ +..+..|-+..+ .=.++++++ |+
T Consensus 211 ~W~Di~wLr~~-T~LPIvvKGi-lt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR 288 (363)
T KOG0538|consen 211 SWKDIKWLRSI-TKLPIVVKGV-LTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVR 288 (363)
T ss_pred ChhhhHHHHhc-CcCCeEEEee-cccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcc
Confidence 68899999997 9999999986 5556778899999999988 333443 333444433333 345888887 67
Q ss_pred CHHHHHHHhccCCCcEEeec
Q 015899 297 DEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 297 t~eEl~rAl~l~Ga~iIGIN 316 (398)
+-.++-+|+.+ ||+.|.+.
T Consensus 289 ~G~DVlKALAL-GAk~VfiG 307 (363)
T KOG0538|consen 289 RGTDVLKALAL-GAKGVFIG 307 (363)
T ss_pred cchHHHHHHhc-ccceEEec
Confidence 99999999999 99999987
No 392
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.35 E-value=0.63 Score=43.24 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCcEEEE---e---ccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSI---L---TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISV---L---Td~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+.++.+.+.||+.|-. . |-+.+-..+++.++.+++. +++||+.=+.| ++..+.+++..|||+|.++..+..
T Consensus 106 e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 106 EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 3466777889999843 1 1122223367888888876 79999988887 999999999999999999998875
No 393
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=93.33 E-value=0.38 Score=48.01 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=91.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEeccCCcCCCCHH-H
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA--------ACLSILTDEKYFKGSFE-N 229 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA--------~aISVLTd~~~F~Gs~e-d 229 (398)
.++.+.++++.. + ..|+-=.|..|--.. ..++| ...||. +|+-+=+---.+-||.+ -
T Consensus 112 ~T~~~V~~~~~~-----~-~~i~~TRKT~PglR~------leKyA--V~~GGG~nHR~gLsDavliKDNHia~~g~i~~A 177 (280)
T COG0157 112 ATARMVEALRGT-----N-VRIADTRKTTPGLRL------LEKYA--VRAGGGDNHRFGLSDAVLIKDNHIAAAGSITEA 177 (280)
T ss_pred HHHHHHHHhhcc-----C-cEEEeccCCCccHHH------HHHHH--HHhcCCccccCCCcceEEehhhHHHHhccHHHH
Confidence 456788888764 2 778888888884221 11222 123332 34444333334556543 4
Q ss_pred HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhc
Q 015899 230 LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLG 306 (398)
Q Consensus 230 L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~ 306 (398)
++.+|+.....|-+-=+ .-+..|+.+|..+|||.|+|+- ++++++++.++.....| .+++|++ |++-+.....
T Consensus 178 v~~aR~~~~~~~kIEVE-vesle~~~eAl~agaDiImLDN--m~~e~~~~av~~l~~~~-~~~lEaSGgIt~~ni~~yA~ 253 (280)
T COG0157 178 VRRARAAAPFTKKIEVE-VESLEEAEEALEAGADIIMLDN--MSPEELKEAVKLLGLAG-RALLEASGGITLENIREYAE 253 (280)
T ss_pred HHHHHHhCCCCceEEEE-cCCHHHHHHHHHcCCCEEEecC--CCHHHHHHHHHHhccCC-ceEEEEeCCCCHHHHHHHhh
Confidence 55666642233411111 1256799999999999999976 88889999998873344 8999998 8888888888
Q ss_pred cCCCcEEeecc
Q 015899 307 IEGIELIGINN 317 (398)
Q Consensus 307 l~Ga~iIGINn 317 (398)
. |+|+|.+.-
T Consensus 254 t-GVD~IS~ga 263 (280)
T COG0157 254 T-GVDVISVGA 263 (280)
T ss_pred c-CCCEEEeCc
Confidence 6 999999873
No 394
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.30 E-value=0.5 Score=45.60 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=59.2
Q ss_pred CCHHHHHHHhccCCCcEEeeccccC-cccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 296 HDEREMDRVLGIEGIELIGINNRNL-ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINnRdL-~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.|+.++.+.....|++-+=|-.-|- .....+.+...++++. ...++-..|||+|.+|++++.+.|++-|+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~--------~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvi 101 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKI--------GFDWIQVGGGIRDIEKAKRLLSLDVNALVF 101 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhh--------CCCCEEEeCCcCCHHHHHHHHHCCCCEEEE
Confidence 4666666665444665443321111 1122334444555442 112677899999999999999999999999
Q ss_pred cccccCCCChHHHHHhhhc
Q 015899 375 GESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 375 GeaLmk~~dp~~~i~~L~~ 393 (398)
|+...+.++..+.+.+.++
T Consensus 102 gt~a~~~p~~~~~~~~~~g 120 (232)
T PRK13586 102 STIVFTNFNLFHDIVREIG 120 (232)
T ss_pred CchhhCCHHHHHHHHHHhC
Confidence 9999998877776666664
No 395
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=93.25 E-value=0.5 Score=45.88 Aligned_cols=60 Identities=8% Similarity=-0.000 Sum_probs=46.9
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+.+...++++. ..+++-..|||.|.+|++.+.++|++-|+||+..++.++..+.+.+.++
T Consensus 62 n~~~i~~i~~~--------~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g 121 (243)
T TIGR01919 62 NEMMLEEVVKL--------LVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGG 121 (243)
T ss_pred hHHHHHHHHHH--------CCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHcc
Confidence 34455566554 2467788999999999999999999999999999988776666655544
No 396
>PLN02535 glycolate oxidase
Probab=93.25 E-value=0.14 Score=52.73 Aligned_cols=71 Identities=27% Similarity=0.273 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCcEEEEec----cCCcCCCCHHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 201 EIARSYEKGGAACLSILT----DEKYFKGSFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLT----d~~~F~Gs~edL~~Ir~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+-|+...+.|+++|.|-- ...+.-.+++-|..++++ + ++||+.-..|.+..+|..|.++|||+|.+....|
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~a-v~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l 311 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQA-VGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVI 311 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHH-HhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 347788889999997731 011112235777777765 4 7999999999999999999999999999988776
No 397
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.24 E-value=0.13 Score=51.50 Aligned_cols=82 Identities=21% Similarity=0.345 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe--ccCCcCCC--CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHc-CcCEEEEecc
Q 015899 196 DFDPVEIARSYEKGGAACLSIL--TDEKYFKG--SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTK-GADAVLLIAA 270 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVL--Td~~~F~G--s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~-GADaVLLiaa 270 (398)
..+..++++..+++|+++|.|- |-...|.| +++.+..+++. +++||+..+-|.+..++.+.... |||+|.+.-.
T Consensus 137 ~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~-~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 137 PEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEA-LPIPVIANGDIFSPEDAERMLEQTGADGVMIGRG 215 (309)
T ss_dssp CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHH
T ss_pred hhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhc-ccceeEEcCccCCHHHHHHHHHhcCCcEEEEchh
Confidence 3458899999999999999886 56677766 44556666776 88999998888999998887655 9999999888
Q ss_pred CCChHHHH
Q 015899 271 VLPDLDIR 278 (398)
Q Consensus 271 iL~~~~L~ 278 (398)
++.+..|-
T Consensus 216 al~nP~lf 223 (309)
T PF01207_consen 216 ALGNPWLF 223 (309)
T ss_dssp HCC-CCHH
T ss_pred hhhcCHHh
Confidence 88765543
No 398
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.23 E-value=1.6 Score=45.04 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHcCcCEEEEeccC--------------CCh----------HHHHHHHHHHHH-cCCcEEEEc--------------
Q 015899 255 YYARTKGADAVLLIAAV--------------LPD----------LDIRYMTKICKL-LGLTALVEV-------------- 295 (398)
Q Consensus 255 ~eAr~~GADaVLLiaai--------------L~~----------~~L~~Li~~a~~-LGL~~LVEV-------------- 295 (398)
..|..+|.|+|=|-++- .+| .-+.++++..++ .|=+..|-|
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Q ss_pred -CCHHHHHHH----hccCCCcEEeeccccCccccc---ChhhHHHHhhhhcccccccCCceEEEecCC------------
Q 015899 296 -HDEREMDRV----LGIEGIELIGINNRNLETFEV---DNSNTKKLLEGERGEIIRQKNIIVVGESGL------------ 355 (398)
Q Consensus 296 -ht~eEl~rA----l~l~Ga~iIGINnRdL~tf~v---Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI------------ 355 (398)
.+.+|+... .+. |+++|-+...+...-.. +.+....+.+. .++++++-|||
T Consensus 231 g~~~~e~~~~~~~l~~~-gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~--------~~~pv~~~G~i~~~~~~~~~~~~ 301 (361)
T cd04747 231 ADTPDELEALLAPLVDA-GVDIFHCSTRRFWEPEFEGSELNLAGWTKKL--------TGLPTITVGSVGLDGDFIGAFAG 301 (361)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEecCCCccCCCcCccchhHHHHHHHH--------cCCCEEEECCccccccccccccc
Q ss_pred ------CCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015899 356 ------FTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 356 ------~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 390 (398)
.|++++.++.+.| ||.|-+|.+++..++....+++
T Consensus 302 ~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 343 (361)
T cd04747 302 DEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVRE 343 (361)
T ss_pred ccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHc
No 399
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.21 E-value=1.2 Score=43.93 Aligned_cols=90 Identities=24% Similarity=0.494 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
+..+.|+.|.++++++||.++.|+|+.++++.+.+ .++++=|..|+...+ +....+.+ .+.+|+-
T Consensus 63 ~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~----~LL~~va~---------tgkPVil 127 (250)
T PRK13397 63 LGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNF----EFLKTLSH---------IDKPILF 127 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCH----HHHHHHHc---------cCCeEEE
Confidence 34456999999999999999999999999999987 489999998888652 23333322 4667888
Q ss_pred ecC-CCCHHHHH----HHHHcCCCEEEEcc
Q 015899 352 ESG-LFTPDDIA----YVQEAGVKAVLVGE 376 (398)
Q Consensus 352 ESG-I~t~eD~~----~l~~~GadaVLVGe 376 (398)
.-| ..|++|+. ++.+.|..-+++-+
T Consensus 128 k~G~~~t~~e~~~A~e~i~~~Gn~~i~L~e 157 (250)
T PRK13397 128 KRGLMATIEEYLGALSYLQDTGKSNIILCE 157 (250)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 888 88999875 45667887777766
No 400
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=93.18 E-value=1.2 Score=37.31 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCcE-EEEcCC-HHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEE
Q 015899 273 PDLDIRYMTKICKLLGLTA-LVEVHD-EREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVV 350 (398)
Q Consensus 273 ~~~~L~~Li~~a~~LGL~~-LVEVht-~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vV 350 (398)
.+--+..+....++.|.++ +++... .+++...+....+++||++.. +..+.....++++.++. . ..++++|
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~----~~~~~~~~~~l~~~~k~--~-~p~~~iv 85 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS----MTPNLPEAKRLARAIKE--R-NPNIPIV 85 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES----SSTHHHHHHHHHHHHHT--T-CTTSEEE
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc----CcCcHHHHHHHHHHHHh--c-CCCCEEE
Confidence 3445777878888889988 555543 466655444348999999753 33344555566554321 1 2355565
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEccc
Q 015899 351 GESGLFTPDDIAYVQE-AGVKAVLVGES 377 (398)
Q Consensus 351 AESGI~t~eD~~~l~~-~GadaVLVGea 377 (398)
..|...|...-.-+.. .|+|.+++|+.
T Consensus 86 ~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 86 VGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp EEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred EECCchhcChHHHhccCcCcceecCCCh
Confidence 5555545433333333 89999999985
No 401
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=93.16 E-value=0.51 Score=47.65 Aligned_cols=72 Identities=28% Similarity=0.360 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCcEEEEecc-----------C---------CcCC----CCHHHHHHHHhcCC-CCcEEeccccCCHHHH
Q 015899 200 VEIARSYEKGGAACLSILTD-----------E---------KYFK----GSFENLEAVRSAGV-KCPLLCKEFIVDAWQI 254 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd-----------~---------~~F~----Gs~edL~~Ir~a~v-~lPVL~KDFIid~~QI 254 (398)
.+.|+..++.|+++|-|=.- . .+|. ...+.|..+++. + ++||+.-..|.+..++
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~-~~~ipIiasGGIr~~~dv 270 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDI 270 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHH-cCCCcEEEECCCCCHHHH
Confidence 58899999999999997321 0 1111 124566677775 5 8999999999999999
Q ss_pred HHHHHcCcCEEEEeccCC
Q 015899 255 YYARTKGADAVLLIAAVL 272 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (398)
..+..+|||+|-+...+|
T Consensus 271 ~kal~lGAd~V~i~~~~L 288 (326)
T cd02811 271 AKALALGADLVGMAGPFL 288 (326)
T ss_pred HHHHHhCCCEEEEcHHHH
Confidence 999999999999977544
No 402
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=93.16 E-value=0.19 Score=50.65 Aligned_cols=94 Identities=33% Similarity=0.369 Sum_probs=64.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe-ccCCcCCC-----CHHHHHH
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSIL-TDEKYFKG-----SFENLEA 232 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVL-Td~~~F~G-----s~edL~~ 232 (398)
|+.++.+.++.. ...+|.-+ +| ++-|+...+.|+++|-+- .|-+--.| .+.-+..
T Consensus 124 p~~~~i~~l~~~-----gi~v~~~v----~s----------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~ 184 (330)
T PF03060_consen 124 PPPEVIERLHAA-----GIKVIPQV----TS----------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQ 184 (330)
T ss_dssp C-HHHHHHHHHT-----T-EEEEEE----SS----------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHH
T ss_pred chHHHHHHHHHc-----CCcccccc----CC----------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHH
Confidence 446778888764 35777755 22 356888899999998775 23322223 4566677
Q ss_pred HHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 233 VRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 233 Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+++. +++||+.-..|.|..++..|..+|||+|.+.++.+
T Consensus 185 v~~~-~~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 185 VRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp HHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHH
T ss_pred Hhhh-cCCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEE
Confidence 8887 89999999999999999999999999999999976
No 403
>PRK15447 putative protease; Provisional
Probab=93.12 E-value=1.9 Score=43.11 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=72.1
Q ss_pred HHHHHH-HcCcCEEEEeccC------CChHHHHHHHHHHHHcCCcEEEEc----CCHHH---HHHHhccCCCcEEeeccc
Q 015899 253 QIYYAR-TKGADAVLLIAAV------LPDLDIRYMTKICKLLGLTALVEV----HDERE---MDRVLGIEGIELIGINNR 318 (398)
Q Consensus 253 QI~eAr-~~GADaVLLiaai------L~~~~L~~Li~~a~~LGL~~LVEV----ht~eE---l~rAl~l~Ga~iIGINnR 318 (398)
..|.+. +.|||+|-+.... .+.+++.+.++.++..|..+.+-+ +..+| +...++. +.+.|=++|
T Consensus 19 ~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d- 96 (301)
T PRK15447 19 DFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEAND- 96 (301)
T ss_pred HHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeC-
Confidence 456666 4499999999776 567899999999999999987755 32334 4444454 544444443
Q ss_pred cCcccccChhhHHHHhhhhcccccccCCceEEEec--CCCCHHHHHHHHHcCCCEEEEccccc
Q 015899 319 NLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES--GLFTPDDIAYVQEAGVKAVLVGESIV 379 (398)
Q Consensus 319 dL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES--GI~t~eD~~~l~~~GadaVLVGeaLm 379 (398)
+.. ..+++. .+.++++.. .|++...++.+.+.|++.|.+.--|.
T Consensus 97 --------~g~-l~~~~e--------~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 97 --------LGA-VRLLAE--------RGLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred --------HHH-HHHHHh--------cCCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 222 233332 123344444 46899999999999999998876554
No 404
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=93.10 E-value=4.2 Score=41.91 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=104.2
Q ss_pred HHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCC-cEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHH
Q 015899 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~l-PVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~ 278 (398)
.++|+.+.+.|+.++.| -+++....+|+++.+. .|+.- .-+++.++.++...+...+.+ -+.++++
T Consensus 67 ~~ia~~l~~~G~~g~~v--------as~~Ea~~lr~aGi~~~~I~~l-~~~~~~el~~~v~~~~~~i~V----~s~~~l~ 133 (382)
T cd06811 67 PFLARALLEAGIPGAVA--------VDFKEARALHEAGLPLGHVGHL-VQIPRHQVPAVLAMRPEVITV----YSLEKAR 133 (382)
T ss_pred HHHHHHHHHcCCCeEeE--------ecHHHHHHHHHcCCCHHhEEEc-cCCCHHHHHHHHHcCCCEEEE----CCHHHHH
Confidence 37999999999998888 4677888888864443 23211 113577888888877433332 3566788
Q ss_pred HHHHHHHHcC--CcEEEEcCC--------------HHHHHHH----hccCCCcEEeeccc-----cCcc----cccChhh
Q 015899 279 YMTKICKLLG--LTALVEVHD--------------EREMDRV----LGIEGIELIGINNR-----NLET----FEVDNSN 329 (398)
Q Consensus 279 ~Li~~a~~LG--L~~LVEVht--------------~eEl~rA----l~l~Ga~iIGINnR-----dL~t----f~vDl~~ 329 (398)
.+-+.+++.| ..+++.|.+ .+|+..+ .++.+.++.|+.+- |-.+ +...+++
T Consensus 134 ~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Githf~~~~~d~~~~~~~~~~~~~~ 213 (382)
T cd06811 134 EISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFT 213 (382)
T ss_pred HHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeEcccchhhcccCcccccHHHHHHH
Confidence 8888887766 446777652 3333332 33357789999753 1111 1112333
Q ss_pred HHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 330 TKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 330 t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
..++.+.++.. ...+..+..||-.+...+..+.+.|++-+=.|.+|+-.
T Consensus 214 l~~~~~~l~~~---g~~~~~is~Gga~ss~~l~~~~~~~~t~vRpG~~LyG~ 262 (382)
T cd06811 214 LLKAKELLEKR---GIEILQLNAPSATSCATLPLLAEYGVTHGEPGHALTGT 262 (382)
T ss_pred HHHHHHHHHHC---CCCCeEEccCCCcchhhHHHHHhCCCcEEeccEEEecC
Confidence 33433332211 11356788888888888877888999999999999864
No 405
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.07 E-value=0.43 Score=48.29 Aligned_cols=79 Identities=8% Similarity=-0.027 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEecc---CCcCCC---------CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCE
Q 015899 197 FDPVEIARSYEKGGAACLSILTD---EKYFKG---------SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADA 264 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd---~~~F~G---------s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADa 264 (398)
.+..++++.++++|+++|.|-.- .+.+.| .++.+..+++..+++||+.-+.|.++.++.++.. |||+
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDg 229 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDG 229 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCE
Confidence 35678999999999999987521 112332 3778888888623899999888899999988876 8999
Q ss_pred EEEeccCCChHH
Q 015899 265 VLLIAAVLPDLD 276 (398)
Q Consensus 265 VLLiaaiL~~~~ 276 (398)
|.+.-.++.+..
T Consensus 230 VmIGRa~l~nP~ 241 (333)
T PRK11815 230 VMIGRAAYHNPY 241 (333)
T ss_pred EEEcHHHHhCCH
Confidence 999888886644
No 406
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.06 E-value=1.4 Score=42.47 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=87.8
Q ss_pred HHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcE
Q 015899 163 FIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242 (398)
Q Consensus 163 f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPV 242 (398)
...++++.. .....+..+.- .| .. ..+..++++..+..|...| |+.+...+++.++.+++. +++||
T Consensus 118 ~v~~vr~~~--g~~~~l~vDan-----~~-~~-~~~a~~~~~~l~~~~i~~i----EeP~~~~d~~~~~~l~~~-~~ipi 183 (265)
T cd03315 118 VVAALREAV--GDDAELRVDAN-----RG-WT-PKQAIRALRALEDLGLDYV----EQPLPADDLEGRAALARA-TDTPI 183 (265)
T ss_pred HHHHHHHhc--CCCCEEEEeCC-----CC-cC-HHHHHHHHHHHHhcCCCEE----ECCCCcccHHHHHHHHhh-CCCCE
Confidence 455665532 12345665552 12 22 2355667788888776554 445666789999999987 89999
Q ss_pred EeccccCCHHHHHHHHHc-CcCEEEEeccCCCh-HHHHHHHHHHHHcCCcEEEEcCCHHH
Q 015899 243 LCKEFIVDAWQIYYARTK-GADAVLLIAAVLPD-LDIRYMTKICKLLGLTALVEVHDERE 300 (398)
Q Consensus 243 L~KDFIid~~QI~eAr~~-GADaVLLiaaiL~~-~~L~~Li~~a~~LGL~~LVEVht~eE 300 (398)
...+-+.++.++.++... ++|.|.+....... ....++.+.|+..|+.+++-++...-
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 988888899998887654 58999998887764 56888999999999999887554333
No 407
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.05 E-value=0.72 Score=45.82 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=88.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcE----E--EEeccCC---cCCCCH-H
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAAC----L--SILTDEK---YFKGSF-E 228 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~a----I--SVLTd~~---~F~Gs~-e 228 (398)
.++.|..++++ ....|+-=.|..|.- + .... ++..-||+.- + +||--++ +| |++ +
T Consensus 106 ~t~~~v~~~~~------~~~~i~~TRKt~Pg~---r---~~~k--~Av~~GGg~~HR~gL~d~vlikdnHi~~~-g~i~~ 170 (273)
T PRK05848 106 LTSRYVEALES------HKVKLLDTRKTRPLL---R---IFEK--YSVRNGGASNHRLGLDDCLMLKDTHLKHI-KDLKE 170 (273)
T ss_pred HHHHHHHHhcC------CCeEEEecCCCCcch---h---HHHH--HHHHhCCCccccCCchhhhCcCHHHHHHH-CcHHH
Confidence 45677777754 235677777777752 1 1111 2233455531 1 2333333 34 554 4
Q ss_pred HHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHH
Q 015899 229 NLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (398)
Q Consensus 229 dL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rA 304 (398)
-++.+|+... ..+|.. + +-+..|..+|..+|||.|+|+- .+.+++++.++..+...-.+.+|+. |++.+...
T Consensus 171 ~v~~~k~~~p~~~~I~V-E-v~tleea~~A~~~GaDiI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~y 246 (273)
T PRK05848 171 FIQHARKNIPFTAKIEI-E-CESLEEAKNAMNAGADIVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNITLENINAY 246 (273)
T ss_pred HHHHHHHhCCCCceEEE-E-eCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHH
Confidence 5777776411 133432 2 2356789999999999999865 6788899999876544445667765 89999999
Q ss_pred hccCCCcEEeecc
Q 015899 305 LGIEGIELIGINN 317 (398)
Q Consensus 305 l~l~Ga~iIGINn 317 (398)
.++ |++.|.+..
T Consensus 247 a~~-GvD~IsvG~ 258 (273)
T PRK05848 247 AKS-GVDAISSGS 258 (273)
T ss_pred HHc-CCCEEEeCh
Confidence 997 999999974
No 408
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=93.03 E-value=1.3 Score=38.78 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=78.7
Q ss_pred ceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcC-CCCHHHHHHHHhcCC-CCcEEeccccCCHHHH
Q 015899 177 PALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYF-KGSFENLEAVRSAGV-KCPLLCKEFIVDAWQI 254 (398)
Q Consensus 177 ~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F-~Gs~edL~~Ir~a~v-~lPVL~KDFIid~~QI 254 (398)
..+++.+.-..|.. .....|+.+.+.|+++|.+.....+. ....+.++.+|+. . ++|+..+=-...+...
T Consensus 58 ~~~~~~~~~~~~~~-------~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~-~~~~~v~~~~~~~~~~~~ 129 (200)
T cd04722 58 LPLGVQLAINDAAA-------AVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREA-VPDVKVVVKLSPTGELAA 129 (200)
T ss_pred CcEEEEEccCCchh-------hhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHh-cCCceEEEEECCCCccch
Confidence 35677775544421 11123678889999999996554321 1145677888875 5 7888765322232222
Q ss_pred HHHHHcCcCEEEEeccCCChH-------HHHHHHHHHHHcCCcEEEE--cCCHHHHHHHhccCCCcEEeec
Q 015899 255 YYARTKGADAVLLIAAVLPDL-------DIRYMTKICKLLGLTALVE--VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL~~~-------~L~~Li~~a~~LGL~~LVE--Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
..+...|+|.|.+.....+.. .+..+....+..+..+++. +.+.+.+..+++. |++.|+++
T Consensus 130 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~v~vg 199 (200)
T cd04722 130 AAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADGVIVG 199 (200)
T ss_pred hhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCEEEec
Confidence 224678999999866544211 1122223334456665554 4577889999997 99988875
No 409
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.02 E-value=0.47 Score=46.41 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCCCCcEEeccccC-CHHHHHHHHHcCcCEEEEeccCC
Q 015899 226 SFENLEAVRSAGVKCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 226 s~edL~~Ir~a~v~lPVL~KDFIi-d~~QI~eAr~~GADaVLLiaaiL 272 (398)
-.+.++.+|+. ++.||.+ ||.| ++.|+.++..+|||+|+...++.
T Consensus 186 ~~~~i~~lr~~-~~~pi~v-gfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 186 LNELVKRLKAY-SAKPVLV-GFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHHHHHHHhh-cCCCEEE-eCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 36778888886 8899888 6655 59999999999999999998875
No 410
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=92.94 E-value=10 Score=37.26 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC---
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (398)
.-||++.|...+++||+.|-|---+.--.=..+|+..+|+. +..|+=-- .-.++..+.-|...-.|.|.|.-.-.
T Consensus 20 ~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~-~~~~lNlE-~a~~~emi~ia~~vkP~~vtLVPEkr~El 97 (237)
T TIGR00559 20 EPDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEA-LTTPFNIE-MAPTEEMIRIAEEIKPEQVTLVPEARDEV 97 (237)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHH-cCCCEEec-cCCCHHHHHHHHHcCCCEEEECCCCCCCc
Confidence 45899999999999999999975555555578899999986 77765322 22466678889999999999975532
Q ss_pred ----------ChHHHHHHHHHHHHcCCcEEEEc-CCHHHHHHHhccCCCcEEeeccccCccc-cc-----ChhhHHHHhh
Q 015899 273 ----------PDLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGINNRNLETF-EV-----DNSNTKKLLE 335 (398)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~~LVEV-ht~eEl~rAl~l~Ga~iIGINnRdL~tf-~v-----Dl~~t~~L~~ 335 (398)
..+.|+..++..+..|+.+=+=+ -+.+.++.|.++ ||+.|=+..-.|... .. .++.....+.
T Consensus 98 TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~-GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~ 176 (237)
T TIGR00559 98 TTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEV-GADRIEIHTGPYANAYNKKEMAEELQRIVKASV 176 (237)
T ss_pred cCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh-CcCEEEEechhhhcCCCchhHHHHHHHHHHHHH
Confidence 12448888999999999873333 589999999998 999987753333221 11 1112111111
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHc-C-CCEEEEcccccC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-G-VKAVLVGESIVK 380 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-G-adaVLVGeaLmk 380 (398)
.. ..-++.|-|.-|+ +.+.+..+... + ..-+=||-+|+.
T Consensus 177 ~A-----~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia 217 (237)
T TIGR00559 177 HA-----HSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIA 217 (237)
T ss_pred HH-----HHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHH
Confidence 11 1236778888888 78888887655 5 789999988875
No 411
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.88 E-value=1.9 Score=42.70 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHH-cCcCEEEEeccCCC-hH
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYART-KGADAVLLIAAVLP-DL 275 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~-~GADaVLLiaaiL~-~~ 275 (398)
+..++++.+++.|...| |+.+...+++.++.+++. +++||...+-+.+..++..... .++|.|.+....+. -.
T Consensus 192 ~A~~~~~~l~~~~l~~i----EeP~~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~ 266 (316)
T cd03319 192 EAVELLRELAELGVELI----EQPVPAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT 266 (316)
T ss_pred HHHHHHHHHHhcCCCEE----ECCCCCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH
Confidence 56677788888777666 566666788999999987 8999999888889999888765 67999999888874 45
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCHHHHHH
Q 015899 276 DIRYMTKICKLLGLTALVEVHDEREMDR 303 (398)
Q Consensus 276 ~L~~Li~~a~~LGL~~LVEVht~eEl~r 303 (398)
+..++...|+..|+.++.-.|-...+-.
T Consensus 267 ~~~~~~~~a~~~gi~~~~~~~~~~~i~~ 294 (316)
T cd03319 267 EALRIADLARAAGLKVMVGCMVESSLSI 294 (316)
T ss_pred HHHHHHHHHHHcCCCEEEECchhhHHHH
Confidence 6888999999999999987665444433
No 412
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=92.88 E-value=6.8 Score=40.56 Aligned_cols=148 Identities=12% Similarity=0.021 Sum_probs=93.8
Q ss_pred HHHHhcCCCCcE-EeccccCCHH--HHHHHHHcC-----------cCEEEEeccCCChHH----HHHHHHHHHHcCCcEE
Q 015899 231 EAVRSAGVKCPL-LCKEFIVDAW--QIYYARTKG-----------ADAVLLIAAVLPDLD----IRYMTKICKLLGLTAL 292 (398)
Q Consensus 231 ~~Ir~a~v~lPV-L~KDFIid~~--QI~eAr~~G-----------ADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~L 292 (398)
..+.+. .++|| |.-|-..+.+ .|..|..+| -+.|..+++-|+-++ .++.+++||..|+.+=
T Consensus 92 ~~~Ae~-a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 92 HSIAEH-YGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HHHHHH-CCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 334443 57897 5666666653 377787775 999999999997543 7788999998888771
Q ss_pred EE---------------------cCCHHHHHHHhccC----CCcEE----eeccccCc--ccccChhhHHHHhhhhccc-
Q 015899 293 VE---------------------VHDEREMDRVLGIE----GIELI----GINNRNLE--TFEVDNSNTKKLLEGERGE- 340 (398)
Q Consensus 293 VE---------------------Vht~eEl~rAl~l~----Ga~iI----GINnRdL~--tf~vDl~~t~~L~~~i~~~- 340 (398)
.| -.+++|+....+-. |+|.+ |..+--++ .-+.|++...++...++..
T Consensus 171 aELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~ 250 (357)
T TIGR01520 171 IEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKL 250 (357)
T ss_pred EEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhc
Confidence 11 24677776665411 55644 43444442 3457787777773221000
Q ss_pred ccc-cCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 341 IIR-QKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 341 ~i~-~~~v~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
.++ .+++++| ..||+ +.++++++.++|+.-|=|++.+..
T Consensus 251 ~vP~~~~~pLVLHGgSGi-~~e~i~kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 251 GLPAAKPLFFVFHGGSGS-TKQEIKEALSYGVVKMNIDTDTQW 292 (357)
T ss_pred CCCcCCCCcEEEeCCCCC-CHHHHHHHHHCCCeEEEeCcHHHH
Confidence 011 0122244 45666 568999999999999999988754
No 413
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.84 E-value=0.99 Score=45.01 Aligned_cols=142 Identities=15% Similarity=0.167 Sum_probs=93.6
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCc----E----EEEeccCCcCCCCHHHH
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAA----C----LSILTDEKYFKGSFENL 230 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~----a----ISVLTd~~~F~Gs~edL 230 (398)
.++.|.++++.. +....|+-=.|..|--. .... ++..-||+. . |-+-..--.|.|=.+.+
T Consensus 106 ~T~~~v~~~~~~----~~~~~i~~TRKt~Pg~R------~l~k--~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av 173 (278)
T PRK08385 106 ETRKLVELVKAV----NPKVRVAGTRKTLPGLR------LLDK--KAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAI 173 (278)
T ss_pred HHHHHHHHHHhc----CCCEEEEEeCCCChhhh------HHHH--HHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHH
Confidence 457788888753 23467888888778522 1111 233345554 2 22222222233433456
Q ss_pred HHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcC--CcEEEEcC---CHHHHHHHh
Q 015899 231 EAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLG--LTALVEVH---DEREMDRVL 305 (398)
Q Consensus 231 ~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LG--L~~LVEVh---t~eEl~rAl 305 (398)
..+|+.....+|..-= -+..|+.+|..+|||.|+|+- ++++++++.++..+..| -.+.+|++ |++.+....
T Consensus 174 ~~~r~~~~~~kIeVEv--~~leea~~a~~agaDiI~LDn--~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA 249 (278)
T PRK08385 174 RRAKEFSVYKVVEVEV--ESLEDALKAAKAGADIIMLDN--MTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYA 249 (278)
T ss_pred HHHHHhCCCCcEEEEe--CCHHHHHHHHHcCcCEEEECC--CCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHH
Confidence 6666542334443111 266799999999999999976 68889999999888876 46899998 889999988
Q ss_pred ccCCCcEEeecc
Q 015899 306 GIEGIELIGINN 317 (398)
Q Consensus 306 ~l~Ga~iIGINn 317 (398)
+. |+|+|++..
T Consensus 250 ~t-GvD~Is~ga 260 (278)
T PRK08385 250 KL-DVDVISLGA 260 (278)
T ss_pred Hc-CCCEEEeCh
Confidence 87 999999974
No 414
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.83 E-value=0.77 Score=48.25 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=83.8
Q ss_pred CHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHH--cCCcEEEE-cCCHHHHHHHhccCCCcEEeec--cccC-ccc
Q 015899 250 DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL--LGLTALVE-VHDEREMDRVLGIEGIELIGIN--NRNL-ETF 323 (398)
Q Consensus 250 d~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~--LGL~~LVE-Vht~eEl~rAl~l~Ga~iIGIN--nRdL-~tf 323 (398)
|.+-+.....+|.|.|+|+.+-=.-.---+|+++.++ ..++++.- |-|.+.++..+.+ |+|.+-|. .-.. .|-
T Consensus 252 dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~a-GaDgLrVGMGsGSiCiTq 330 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAA-GADGLRVGMGSGSICITQ 330 (503)
T ss_pred hhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHc-cCceeEeccccCceeeec
Confidence 5567777788999999999875433223457777775 57776543 4577888888886 99976332 1100 111
Q ss_pred cc------ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 324 EV------DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 324 ~v------Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
++ ......+.+... ...++++||-|||.++-++.+...+||+.|.+|.-|-..
T Consensus 331 evma~GrpQ~TAVy~va~~A-----~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt 389 (503)
T KOG2550|consen 331 KVMACGRPQGTAVYKVAEFA-----NQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGT 389 (503)
T ss_pred eeeeccCCcccchhhHHHHH-----HhcCCceeecCCcCccchhHhhhhcCchhheecceeeee
Confidence 11 111112222221 124789999999999999999999999999999877543
No 415
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.80 E-value=1.4 Score=47.40 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCC--CcEEeccccCCHHHHHHHHHcCcCEEEE----e---
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--CPLLCKEFIVDAWQIYYARTKGADAVLL----I--- 268 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~--lPVL~KDFIid~~QI~eAr~~GADaVLL----i--- 268 (398)
+..+.|++..++|++.|-|=+-+++-..-.+.++.+|+. .. ++|.+.- +.++.+...+..+|||+|.+ .
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~-~~~~~~V~aGn-V~t~e~a~~li~aGAd~I~vg~g~Gs~c 319 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK-YGDSVKVGAGN-VVDREGFRYLAEAGADFVKVGIGGGSIC 319 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh-CCCCceEEecc-ccCHHHHHHHHHcCCCEEEECCCCCcCc
Confidence 557889999999999988744443322337889999885 43 4444443 68889999999999999977 1
Q ss_pred -cc-C--CChHHHHHHHHHHHH-------cC--CcEEEE--cCCHHHHHHHhccCCCcEEeec
Q 015899 269 -AA-V--LPDLDIRYMTKICKL-------LG--LTALVE--VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 269 -aa-i--L~~~~L~~Li~~a~~-------LG--L~~LVE--Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
++ . ....++..+.+.+.. .| +.++.+ +++-.++-+|+.+ ||+.+.+.
T Consensus 320 ~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~-GA~~vm~G 381 (502)
T PRK07107 320 ITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAM-GADFIMLG 381 (502)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHc-CCCeeeeC
Confidence 11 1 122345555544442 37 777776 5799999999998 99988775
No 416
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=92.66 E-value=5.3 Score=35.50 Aligned_cols=136 Identities=21% Similarity=0.186 Sum_probs=85.2
Q ss_pred cHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCc
Q 015899 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (398)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lP 241 (398)
.|.+.|.... ++..+..|+|-.++. ......+...+.+.|...=.++ ...+++.+..+|+....+|
T Consensus 50 tL~e~l~~~~---~~~~i~leiK~~~~~------~~~~~~l~~~i~~~~~~~~v~i-----~s~~~~~l~~~~~~~p~~~ 115 (189)
T cd08556 50 TLEEVLELVK---GGVGLNIELKEPTRY------PGLEAKVAELLREYGLEERVVV-----SSFDHEALRALKELDPEVP 115 (189)
T ss_pred CHHHHHHhcc---cCcEEEEEECCCCCc------hhHHHHHHHHHHHcCCcCCEEE-----EeCCHHHHHHHHHhCCCCc
Confidence 3455554432 246899999996652 2234456777777763222221 2247788999987534566
Q ss_pred EE--eccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEE-cCCHHHHHHHhccCCCcEEeec
Q 015899 242 LL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 242 VL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVE-Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
+. ..............+..|++.+-+....++ ..+++.++..|+.+++= |++.++++.+... |++.|-++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~i~~~~~~g~~v~~wtvn~~~~~~~~~~~-GVdgI~TD 188 (189)
T cd08556 116 TGLLVDKPPLDPLLAELARALGADAVNPHYKLLT----PELVRAAHAAGLKVYVWTVNDPEDARRLLAL-GVDGIITD 188 (189)
T ss_pred EEEEeecCcccchhhhHHHhcCCeEEccChhhCC----HHHHHHHHHcCCEEEEEcCCCHHHHHHHHHC-CCCEEecC
Confidence 52 222211111112467789998877655554 46788888899998654 4679999999997 98877654
No 417
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.64 E-value=0.56 Score=46.08 Aligned_cols=86 Identities=21% Similarity=0.373 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
.+.|+.|.++|+++||.++.|+++.+.++.+.++ ++++=|..++...+ .....+.+ .+.+|+..-
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~--~d~lkI~s~~~~n~----~LL~~~a~---------~gkPVilk~ 139 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY--ADILQIGARNMQNF----ELLKEVGK---------QGKPVLLKR 139 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh--CCEEEECcccccCH----HHHHHHhc---------CCCcEEEeC
Confidence 5669999999999999999999999999999885 78999988877542 22233322 477899999
Q ss_pred CCC-CHHHHHH----HHHcCCCEEEE
Q 015899 354 GLF-TPDDIAY----VQEAGVKAVLV 374 (398)
Q Consensus 354 GI~-t~eD~~~----l~~~GadaVLV 374 (398)
|.. |++|+.. +.+.|.+-+++
T Consensus 140 G~~~t~~e~~~Ave~i~~~Gn~~i~l 165 (260)
T TIGR01361 140 GMGNTIEEWLYAAEYILSSGNGNVIL 165 (260)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 999 9998754 55678876666
No 418
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=92.60 E-value=1 Score=45.44 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=84.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHH-HHcCCcEEEEe-------ccCC--cCCCCH-
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAACLSIL-------TDEK--YFKGSF- 227 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY-~~~GA~aISVL-------Td~~--~F~Gs~- 227 (398)
.++.|.+++.+ ....|+.=.|..|--. .+++-. .-||+. -|-+ --++ .|-|++
T Consensus 133 ~T~~~v~~~~~------~~~~i~~TRKT~Pg~R---------~l~k~AV~~GGG~-~HR~gLsd~iLikdNHi~~~G~i~ 196 (296)
T PRK09016 133 EVRRYVELLAG------TNTQLLDTRKTLPGLR---------SALKYAVLCGGGA-NHRLGLSDAFLIKENHIIASGSIR 196 (296)
T ss_pred HHHHHHHHhcC------CCeEEEecCCCCCchh---------HHHHHHHHhcCcc-cccCCchhhhccCHHHHHHhCcHH
Confidence 45678877742 2356777777667521 222222 234432 2211 1111 233554
Q ss_pred HHHHHHHhcCCCCcEE--eccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHH
Q 015899 228 ENLEAVRSAGVKCPLL--CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (398)
Q Consensus 228 edL~~Ir~a~v~lPVL--~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~ 302 (398)
+-++.+|+.....||. +. +..|+.+|..+|||.|+|+- ++++++++.++..+. .+++|++ |++-+.
T Consensus 197 ~av~~~r~~~~~~kIeVEv~----sleea~ea~~~gaDiI~LDn--~s~e~~~~av~~~~~---~~~ieaSGGI~~~ni~ 267 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEVEVE----NLDELDQALKAGADIIMLDN--FTTEQMREAVKRTNG---RALLEVSGNVTLETLR 267 (296)
T ss_pred HHHHHHHHhCCCCCEEEEeC----CHHHHHHHHHcCCCEEEeCC--CChHHHHHHHHhhcC---CeEEEEECCCCHHHHH
Confidence 5566666542334443 32 46789999999999999976 777889999886542 7889997 888888
Q ss_pred HHhccCCCcEEeecc
Q 015899 303 RVLGIEGIELIGINN 317 (398)
Q Consensus 303 rAl~l~Ga~iIGINn 317 (398)
...+. |+|+|.+..
T Consensus 268 ~yA~t-GVD~Is~ga 281 (296)
T PRK09016 268 EFAET-GVDFISVGA 281 (296)
T ss_pred HHHhc-CCCEEEeCc
Confidence 88886 999999974
No 419
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=92.56 E-value=0.49 Score=45.39 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCC------CHHHHHHHHhc----CCCCcEEeccccCCHHHHHHHHHcCc
Q 015899 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSA----GVKCPLLCKEFIVDAWQIYYARTKGA 262 (398)
Q Consensus 193 i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G------s~edL~~Ir~a----~v~lPVL~KDFIid~~QI~eAr~~GA 262 (398)
+++. .|.+...-|.. =.+.+-|+|=..-|+| +++.++.+|+. +.++||.. |+.|++..+.+...+||
T Consensus 113 lnP~-Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGA 189 (220)
T PRK08883 113 LNPA-TPLHHLEYIMD-KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGA 189 (220)
T ss_pred eCCC-CCHHHHHHHHH-hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCC
Confidence 3443 45555555554 3788888877777777 55677777664 12477766 88899999999999999
Q ss_pred CEEEEeccCCChHHHHHHHHHHH
Q 015899 263 DAVLLIAAVLPDLDIRYMTKICK 285 (398)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~ 285 (398)
|.+.++.++...++.++.++..+
T Consensus 190 d~vVvGSaIf~~~d~~~~i~~l~ 212 (220)
T PRK08883 190 DMFVAGSAIFGQPDYKAVIDEMR 212 (220)
T ss_pred CEEEEeHHHhCCCCHHHHHHHHH
Confidence 99999999875444544444443
No 420
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=92.55 E-value=12 Score=37.09 Aligned_cols=170 Identities=15% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCcEEEEe-ccCCcCCCCHHHHHHH----Hhc-CCCCcEEeccccCCHH---HHHHHHHcCcCEEEEecc
Q 015899 200 VEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAV----RSA-GVKCPLLCKEFIVDAW---QIYYARTKGADAVLLIAA 270 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVL-Td~~~F~Gs~edL~~I----r~a-~v~lPVL~KDFIid~~---QI~eAr~~GADaVLLiaa 270 (398)
.++.+.+.+.|+++|-++ |=-+|+.=+.+.-..+ .+. .-.+||+..=.--... ....|..+|||+|+++.-
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP 108 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPP 108 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCC
Confidence 455677889999999997 3333444444444333 222 2368998542211112 344556899999999877
Q ss_pred CC---ChHH-HHHHHHHHHHcCCcEEEEcC-----CHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccc
Q 015899 271 VL---PDLD-IRYMTKICKLLGLTALVEVH-----DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEI 341 (398)
Q Consensus 271 iL---~~~~-L~~Li~~a~~LGL~~LVEVh-----t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~ 341 (398)
.. +++. ++++-..+...++.+++=-. +.+.+.+..+. -..++||-.. ..|+....+++...
T Consensus 109 ~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~-~~nvvgiKds-----~~d~~~~~~~~~~~---- 178 (296)
T TIGR03249 109 YLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADR-CPNLVGFKDG-----IGDMEQMIEITQRL---- 178 (296)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhh-CCCEEEEEeC-----CCCHHHHHHHHHHc----
Confidence 54 4444 55555556667777665311 56666666551 3579999742 45777777776541
Q ss_pred cccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 342 IRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 342 i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+.+..+.+..+.. -..+-....+|++|++-|-+=+-++
T Consensus 179 --~~~~~v~~G~~~~-d~~~~~~~~~Ga~G~is~~~n~~P~ 216 (296)
T TIGR03249 179 --GDRLGYLGGMPTA-EVTAPAYLPLGVTSYSSAIFNFIPH 216 (296)
T ss_pred --CCCeEEEeCCCcc-hhhHHHHHhCCCCEEEecHHHhhHH
Confidence 2344343332222 2234455678999999886644333
No 421
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.54 E-value=0.31 Score=49.49 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccC------CcCCC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-cCEEEEe
Q 015899 197 FDPVEIARSYEKGGAACLSILTDE------KYFKG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI 268 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~------~~F~G-s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~G-ADaVLLi 268 (398)
.+..++|+.+++.|++.|+|-.-. .++.| ..+..+.+|+. +++||+.-..|.++.+..++...| ||.|.+.
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~-~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH-ANIATGAVGLITSGAQAEEILQNNRADLIFIG 305 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh-cCCcEEEeCCCCCHHHHHHHHHcCCCChHHhh
Confidence 355688999999999999984321 22334 34566788887 899999988889999999999887 9999997
Q ss_pred ccCCChHHHH
Q 015899 269 AAVLPDLDIR 278 (398)
Q Consensus 269 aaiL~~~~L~ 278 (398)
=.++.+.++-
T Consensus 306 R~~iadP~~~ 315 (337)
T PRK13523 306 RELLRNPYFP 315 (337)
T ss_pred HHHHhCccHH
Confidence 7777665543
No 422
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=92.51 E-value=4.4 Score=37.74 Aligned_cols=123 Identities=25% Similarity=0.221 Sum_probs=77.3
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCC--cEEEEeccCCcCCCCHHHHHHHHhcCCCCcE--EeccccCCH
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA--ACLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVDA 251 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA--~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPV--L~KDFIid~ 251 (398)
...++.|+|-..+. ...-...+...+.+.|. ..+-+- .| +.+.|..+|+...++|+ +.....-+
T Consensus 100 ~~~l~iEiK~~~~~-----~~~~~~~v~~~l~~~~~~~~~v~~~----Sf--~~~~l~~~~~~~p~~~~~~l~~~~~~~- 167 (229)
T cd08562 100 GLGLNLEIKPDPGD-----EALTARVVAAALRELWPHASKLLLS----SF--SLEALRAARRAAPELPLGLLFDTLPAD- 167 (229)
T ss_pred CCEEEEEECCCCCc-----cHHHHHHHHHHHHHhcCCcCCEEEE----CC--CHHHHHHHHHhCCCCcEEEEecCCCcC-
Confidence 46799999955442 11112235555566554 333331 12 77788888875334554 22322112
Q ss_pred HHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEE-cCCHHHHHHHhccCCCcEEeec
Q 015899 252 WQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 252 ~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVE-Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
-...+...|++++.+....++. ++++.++..|+.+++= |.+.++++++..+ |++-|-++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wTvn~~~~~~~~~~~-gVdgiiTD 227 (229)
T cd08562 168 -WLELLAALGAVSIHLNYRGLTE----EQVKALKDAGYKLLVYTVNDPARAAELLEW-GVDAIFTD 227 (229)
T ss_pred -HHHHHHHcCCeEEecChhhCCH----HHHHHHHHCCCEEEEEeCCCHHHHHHHHHC-CCCEEEcC
Confidence 2334567889888776666653 5888999999999765 5789999999997 88876544
No 423
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.46 E-value=0.97 Score=43.58 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCC-CCcEEeccccC-CHHHHHHHHHcCcCEEEEeccCCC---hHHHHHHHHHHHH
Q 015899 227 FENLEAVRSAGV-KCPLLCKEFIV-DAWQIYYARTKGADAVLLIAAVLP---DLDIRYMTKICKL 286 (398)
Q Consensus 227 ~edL~~Ir~a~v-~lPVL~KDFIi-d~~QI~eAr~~GADaVLLiaaiL~---~~~L~~Li~~a~~ 286 (398)
.+.++.+|+. . +.||.. ||.| ++.++.++..+|||+++.+.+++. +.+++++.+.++.
T Consensus 173 ~~~i~~lr~~-~~~~~i~v-~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~ 235 (244)
T PRK13125 173 ERNIKRVRNL-VGNKYLVV-GFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKK 235 (244)
T ss_pred HHHHHHHHHh-cCCCCEEE-eCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHH
Confidence 3466677775 4 578765 6656 999999999999999999988763 2224455554443
No 424
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=92.45 E-value=3.1 Score=40.79 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=110.7
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC---
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL--- 272 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL--- 272 (398)
.-||++.|...+++||+.|-|--=+.--.=..+|+..+|+. +..| |.=..-.++.-+.-|...-.|.|.|.-.-.
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~-~~~~-lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~ 98 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLREL-VKTP-LNLEMAPTEEMVDIALKVKPDQVTLVPEKREEL 98 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH--SSE-EEEEEESSHHHHHHHHHH--SEEEEE--SGGGB
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHH-cccC-EEeccCCCHHHHHHHHhCCcCEEEECCCCCCCc
Confidence 45899999999999999999975555555678899999986 8888 433333567778889999999999976531
Q ss_pred ---------C-hHHHHHHHHHHHHcCCcEEEEc-CCHHHHHHHhccCCCcEEeeccccCcccccCh--------hhHHHH
Q 015899 273 ---------P-DLDIRYMTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGINNRNLETFEVDN--------SNTKKL 333 (398)
Q Consensus 273 ---------~-~~~L~~Li~~a~~LGL~~LVEV-ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl--------~~t~~L 333 (398)
. .+.|+..++..+..|+.+=+=+ -+.+.++.|.++ |++.|=+-.-.|....-+. +.....
T Consensus 99 TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~-Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~a 177 (239)
T PF03740_consen 99 TTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKEL-GADRVELHTGPYANAFDDAEEAEEELLERLRDA 177 (239)
T ss_dssp STTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHc-CCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHH
Confidence 1 3459999999999999884433 589999999998 9999877544333322111 222222
Q ss_pred hhhhcccccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcccccC
Q 015899 334 LEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLVGESIVK 380 (398)
Q Consensus 334 ~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLVGeaLmk 380 (398)
+... ..-+.-|-|.-|+ +.+.+..+.+. +..-+=||-+|+.
T Consensus 178 a~~a-----~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia 219 (239)
T PF03740_consen 178 ARYA-----HELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIA 219 (239)
T ss_dssp HHHH-----HHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHH
T ss_pred HHHH-----HHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHH
Confidence 2211 1246788888898 55666665544 6788889988864
No 425
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.37 E-value=1.2 Score=44.52 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=87.6
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHH-HHHcCCc----EE--EEeccC---CcCCCCHH
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARS-YEKGGAA----CL--SILTDE---KYFKGSFE 228 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~a-Y~~~GA~----aI--SVLTd~---~~F~Gs~e 228 (398)
.++.|.+++.+ .-.-|+-=.|..|-- + .+++- ..-||+. .+ +||--+ .+|+|=.+
T Consensus 120 ~T~~~v~~~~~------~~~~i~~TRKt~Pg~---R------~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~ 184 (288)
T PRK07428 120 LTRQYVEKIAD------LPTQLVDTRKTTPGL---R------LLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGE 184 (288)
T ss_pred HHHHHHHHhcC------CCeEEEecCCCCCcc---h------HHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHH
Confidence 45678877733 225677777777742 2 23332 2334443 11 122222 23544345
Q ss_pred HHHHHHhcCCC--CcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHH
Q 015899 229 NLEAVRSAGVK--CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDR 303 (398)
Q Consensus 229 dL~~Ir~a~v~--lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~r 303 (398)
-+..+|+. .. .+|..- .-+..|+.+|..+|||.|+|+ -++.+++++.++..+...-.+.+|+. |.+.+..
T Consensus 185 av~~~r~~-~~~~~~I~VE--v~tleea~eA~~~GaD~I~LD--n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ 259 (288)
T PRK07428 185 AITRIRQR-IPYPLTIEVE--TETLEQVQEALEYGADIIMLD--NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRA 259 (288)
T ss_pred HHHHHHHh-CCCCCEEEEE--CCCHHHHHHHHHcCCCEEEEC--CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 56667764 32 233221 125679999999999999998 47888899999877765667778886 8888888
Q ss_pred HhccCCCcEEeec
Q 015899 304 VLGIEGIELIGIN 316 (398)
Q Consensus 304 Al~l~Ga~iIGIN 316 (398)
.... |++.|.+.
T Consensus 260 ya~t-GvD~Isvg 271 (288)
T PRK07428 260 VAET-GVDYISSS 271 (288)
T ss_pred HHHc-CCCEEEEc
Confidence 7886 99999886
No 426
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.34 E-value=1.3 Score=41.92 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEec-cCCChHHHHH
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIA-AVLPDLDIRY 279 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLia-aiL~~~~L~~ 279 (398)
+.++...++||..|.. .+...++...+.. .+.|++.. ..++.|+.+|..+|||.|-+-. ..++.+.++.
T Consensus 74 ~~~~~a~~aGA~fivs-------p~~~~~v~~~~~~-~~~~~~~G--~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~ 143 (206)
T PRK09140 74 EQVDRLADAGGRLIVT-------PNTDPEVIRRAVA-LGMVVMPG--VATPTEAFAALRAGAQALKLFPASQLGPAGIKA 143 (206)
T ss_pred HHHHHHHHcCCCEEEC-------CCCCHHHHHHHHH-CCCcEEcc--cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence 5677788889999987 2344455555554 57888876 5789999999999999998733 2345444554
Q ss_pred HHHHHHHcCCcEEEEc-CCHHHHHHHhccCCCcEEeec
Q 015899 280 MTKICKLLGLTALVEV-HDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 280 Li~~a~~LGL~~LVEV-ht~eEl~rAl~l~Ga~iIGIN 316 (398)
+..... ..+.++.-= =|.+.+...+++ |++.+++-
T Consensus 144 l~~~~~-~~ipvvaiGGI~~~n~~~~~~a-Ga~~vav~ 179 (206)
T PRK09140 144 LRAVLP-PDVPVFAVGGVTPENLAPYLAA-GAAGFGLG 179 (206)
T ss_pred HHhhcC-CCCeEEEECCCCHHHHHHHHHC-CCeEEEEe
Confidence 443321 023332221 277888888887 99999876
No 427
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.32 E-value=0.24 Score=50.25 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHcCCcEEEEec---------------cCCcCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHHH
Q 015899 198 DPVEIARSYEKGGAACLSILT---------------DEKYFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQI 254 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT---------------d~~~F~G------s~edL~~Ir~a~v--~lPVL~KDFIid~~QI 254 (398)
++.++|++++++||++|++.. ..+.+.| .+..+..+++. + ++||+.-..|.++.++
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~-~~~~ipiig~GGI~~~~da 303 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAE-LQGRLPIIGVGGISSAQDA 303 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHH-hCCCCCEEEECCCCCHHHH
Confidence 589999999999999998742 1111122 33556666654 4 6999998999999999
Q ss_pred HHHHHcCcCEEEEeccCC
Q 015899 255 YYARTKGADAVLLIAAVL 272 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL 272 (398)
.+...+|||+|-+..+++
T Consensus 304 ~e~l~aGA~~Vqv~ta~~ 321 (335)
T TIGR01036 304 LEKIRAGASLLQIYSGFI 321 (335)
T ss_pred HHHHHcCCcHHHhhHHHH
Confidence 999999999999988864
No 428
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=92.32 E-value=0.93 Score=46.67 Aligned_cols=90 Identities=21% Similarity=0.367 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
++.+.++.|.++|+++||.++.|+++.++++.+.++ ++++-|..++.+.+ ....++.+ .+.+|+.
T Consensus 166 ~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~--vd~lkI~s~~~~n~----~LL~~~a~---------~gkPVil 230 (360)
T PRK12595 166 LGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY--VDVIQIGARNMQNF----ELLKAAGR---------VNKPVLL 230 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh--CCeEEECcccccCH----HHHHHHHc---------cCCcEEE
Confidence 345679999999999999999999999999999885 89999998888763 33333332 4678999
Q ss_pred ecCC-CCHHHHHH----HHHcCCCEEEEcc
Q 015899 352 ESGL-FTPDDIAY----VQEAGVKAVLVGE 376 (398)
Q Consensus 352 ESGI-~t~eD~~~----l~~~GadaVLVGe 376 (398)
.-|. .|++|+.. +.+.|.+-+++-+
T Consensus 231 k~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 231 KRGLSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred eCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 9998 69998754 5567887676665
No 429
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=92.28 E-value=11 Score=37.62 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----cCCcEEEE-------eccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCc
Q 015899 199 PVEIARSYEK----GGAACLSI-------LTDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGA 262 (398)
Q Consensus 199 p~~iA~aY~~----~GA~aISV-------LTd~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GA 262 (398)
..++|+.+.+ .|...+-= -|-+..|+| +++.|+.+++. ..+||+.-= -+++|+..+..+ +
T Consensus 26 ~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~-~GlpvvTeV--~~~~~~~~v~~~-~ 101 (264)
T PRK05198 26 ALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKET-FGVPVLTDV--HEPEQAAPVAEV-V 101 (264)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHH-HCCceEEEe--CCHHHHHHHHhh-C
Q ss_pred CEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc----CCCcEE----eeccccCcccccChhhHH
Q 015899 263 DAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI----EGIELI----GINNRNLETFEVDNSNTK 331 (398)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l----~Ga~iI----GINnRdL~tf~vDl~~t~ 331 (398)
|.+=+.+...-+ -+|++.+...|.-+++-=. +.+|...+.+- .+-++| |+ ...++.+.+|+...-
T Consensus 102 DilQIgArn~rn---~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~-tf~y~r~~~D~~~vp 177 (264)
T PRK05198 102 DVLQIPAFLCRQ---TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT-SFGYNNLVVDMRGLP 177 (264)
T ss_pred cEEEECchhcch---HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC-CcCCCCeeechhhhH
Q ss_pred HHhhhhcccccccCCceEEEecCCC-----------------CHHHHHHHHHcCCCEEEE
Q 015899 332 KLLEGERGEIIRQKNIIVVGESGLF-----------------TPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 332 ~L~~~i~~~~i~~~~v~vVAESGI~-----------------t~eD~~~l~~~GadaVLV 374 (398)
.+... +.+||.---=. =+.-++....+|+||++|
T Consensus 178 ~~k~~---------~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~i 228 (264)
T PRK05198 178 IMRET---------GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFI 228 (264)
T ss_pred HHhhC---------CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEE
No 430
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=92.28 E-value=1.3 Score=44.49 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=55.6
Q ss_pred CcEEEEcCCHH----HHHHHhccC--CCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHH
Q 015899 289 LTALVEVHDER----EMDRVLGIE--GIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 362 (398)
Q Consensus 289 L~~LVEVht~e----El~rAl~l~--Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~ 362 (398)
..+.+||.|.+ |+..+.+.. ++++|-..|-+-. .....+...++.+.+..... ..+.+++.||| +++.+.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~-~G~~~~~~~~~~~~l~~~g~--~~~~ieaSGgI-~~~~i~ 260 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR-RGVFRYLIREVRWALDIRGY--KHVKIFVSGGL-DEEDIK 260 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC-CCCHHHHHHHHHHHHHhCCC--CCeEEEEeCCC-CHHHHH
Confidence 45667777666 555555431 3677766642200 01122333444433211111 34788999999 999999
Q ss_pred HHHHcCCCEEEEcccccCCC
Q 015899 363 YVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 363 ~l~~~GadaVLVGeaLmk~~ 382 (398)
.+.+.|+|.+=||+.+...+
T Consensus 261 ~~a~~gvD~isvGs~~~~~~ 280 (302)
T cd01571 261 ELEDVGVDAFGVGTAISKAP 280 (302)
T ss_pred HHHHcCCCEEECCcccCCCC
Confidence 99999999999999998754
No 431
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=92.27 E-value=0.2 Score=48.71 Aligned_cols=90 Identities=20% Similarity=0.123 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHH----cCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 196 DFDPVEIARSYEK----GGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 196 ~~dp~~iA~aY~~----~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
+.+..++|.+|.- .|-..+=+=.-.+.|+.=++.+..+++...+.|++..+.|.++.|.+++..+|||.|..+..+
T Consensus 135 ~~~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 135 PLDKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred CCCcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 5567777766653 355555441113344332255565554448999999999999999999999999999998777
Q ss_pred CChHHHHHHHHHHH
Q 015899 272 LPDLDIRYMTKICK 285 (398)
Q Consensus 272 L~~~~L~~Li~~a~ 285 (398)
=++.+++++++..+
T Consensus 215 ee~~~~e~~~~~i~ 228 (230)
T PF01884_consen 215 EEDPDLEEALETIK 228 (230)
T ss_dssp HHHH-HHHHHTHHH
T ss_pred EEcchHHHHHHHHh
Confidence 66655777766543
No 432
>PLN02858 fructose-bisphosphate aldolase
Probab=92.19 E-value=8.5 Score=46.30 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=98.6
Q ss_pred CCCcE-EeccccCCHHHHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEc-----------------
Q 015899 238 VKCPL-LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEV----------------- 295 (398)
Q Consensus 238 v~lPV-L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEV----------------- 295 (398)
.++|| |.=|-..+...+.+|..+|-+.|..+.+-|+-++ .++.+++||..|+.+=.|+
T Consensus 1168 ~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~ 1247 (1378)
T PLN02858 1168 ASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEA 1247 (1378)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccc
Confidence 47887 5677777888899999999999999999997544 7889999999888773332
Q ss_pred --CCHHHHHHHhccCCCcEEeec----cccCcc--cccChhhHHHHhhhhcccccccCCc--eEEEecCCCCHHHHHHHH
Q 015899 296 --HDEREMDRVLGIEGIELIGIN----NRNLET--FEVDNSNTKKLLEGERGEIIRQKNI--IVVGESGLFTPDDIAYVQ 365 (398)
Q Consensus 296 --ht~eEl~rAl~l~Ga~iIGIN----nRdL~t--f~vDl~~t~~L~~~i~~~~i~~~~v--~vVAESGI~t~eD~~~l~ 365 (398)
.+.+|+.+-++..|+|.+.+. +--|.. -+.|++...++.+.+ ...++ ++=..||+. .++++++.
T Consensus 1248 ~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~-----~~~~vpLVlHGgSG~~-~~~~~~ai 1321 (1378)
T PLN02858 1248 KLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALS-----SKKGVLLVLHGASGLP-ESLIKECI 1321 (1378)
T ss_pred CCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHh-----cCCCCcEEEeCCCCCC-HHHHHHHH
Confidence 245666666654588877654 223322 456777777776652 11234 444577884 78899999
Q ss_pred HcCCCEEEEccccc
Q 015899 366 EAGVKAVLVGESIV 379 (398)
Q Consensus 366 ~~GadaVLVGeaLm 379 (398)
++|+.-|=|++.+.
T Consensus 1322 ~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1322 ENGVRKFNVNTEVR 1335 (1378)
T ss_pred HcCCeEEEeCHHHH
Confidence 99999999998774
No 433
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=92.16 E-value=0.19 Score=51.70 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCc-EEeeccccC-ccccc-ChhhHHHHhhhhcccccccCCc
Q 015899 271 VLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIE-LIGINNRNL-ETFEV-DNSNTKKLLEGERGEIIRQKNI 347 (398)
Q Consensus 271 iL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~-iIGINnRdL-~tf~v-Dl~~t~~L~~~i~~~~i~~~~v 347 (398)
.++.+++..+-+. .-+--++.-|.+.+|+..+... |++ ++..|..+. -+..+ -++...++... + +..+
T Consensus 204 ~i~ked~~~i~~~--~~~~lv~kGV~~~~D~~~a~~t-g~~~I~vsnhggrqlD~g~st~~~L~ei~~a-----v-~~~~ 274 (360)
T COG1304 204 VISKEDGAGISKE--WAGPLVLKGILAPEDAAGAGGT-GADGIEVSNHGGRQLDWGISTADSLPEIVEA-----V-GDRI 274 (360)
T ss_pred cccHHHHhHHHHh--cCCcHHHhCCCCHHHHHhhccC-CceEEEEEcCCCccccCCCChHHHHHHHHHH-----h-CCCe
Confidence 4455566655443 2233334457889999999997 765 555553331 11111 12222333332 1 3357
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 348 IVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 348 ~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
.+++-|||.+..|+.++..+||++|.+|-.+..+
T Consensus 275 ~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~ 308 (360)
T COG1304 275 EVIADGGIRSGLDVAKALALGADAVGIGRPFLYG 308 (360)
T ss_pred EEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHH
Confidence 8999999999999999999999999999877654
No 434
>PLN02826 dihydroorotate dehydrogenase
Probab=92.15 E-value=0.62 Score=48.79 Aligned_cols=74 Identities=27% Similarity=0.186 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCcEEEEec------c----CC------cCCC------CHHHHHHHHhcCC--CCcEEeccccCCHHH
Q 015899 198 DPVEIARSYEKGGAACLSILT------D----EK------YFKG------SFENLEAVRSAGV--KCPLLCKEFIVDAWQ 253 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT------d----~~------~F~G------s~edL~~Ir~a~v--~lPVL~KDFIid~~Q 253 (398)
++.++|+...+.||++|.+-. + .. -+.| +++.+..+++. + ++||+.-..|.+..+
T Consensus 277 di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~-~~~~ipIIgvGGI~sg~D 355 (409)
T PLN02826 277 DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRL-TRGKIPLVGCGGVSSGED 355 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHH-hCCCCcEEEECCCCCHHH
Confidence 588999999999999998752 0 11 1222 45677777775 5 799999999999999
Q ss_pred HHHHHHcCcCEEEEeccCC
Q 015899 254 IYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 254 I~eAr~~GADaVLLiaaiL 272 (398)
+++...+||++|-+..+++
T Consensus 356 a~e~i~AGAs~VQv~Ta~~ 374 (409)
T PLN02826 356 AYKKIRAGASLVQLYTAFA 374 (409)
T ss_pred HHHHHHhCCCeeeecHHHH
Confidence 9999999999999988754
No 435
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=92.12 E-value=14 Score=36.85 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCcEEEEe-ccCCcCCCCHH----HHHHHHhc-CCCCcEEeccccCCHH---HHHHHHHcCcCEEEEec
Q 015899 199 PVEIARSYEKGGAACLSIL-TDEKYFKGSFE----NLEAVRSA-GVKCPLLCKEFIVDAW---QIYYARTKGADAVLLIA 269 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVL-Td~~~F~Gs~e----dL~~Ir~a-~v~lPVL~KDFIid~~---QI~eAr~~GADaVLLia 269 (398)
..++.+.+...|+++|-++ |--.|+.=+.+ -++.+++. .-.+||+..=.--... ....|..+|||+|+++.
T Consensus 30 l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 30 YREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 3455677888999999886 12222222332 22333332 2368998633221122 34456788999999987
Q ss_pred cCC---ChHH-HHHHHHHHHHcCCcEEEEc-----CCHHHHHHHh-ccCCCcEEeeccccCcccccChhhHHHHhhhhcc
Q 015899 270 AVL---PDLD-IRYMTKICKLLGLTALVEV-----HDEREMDRVL-GIEGIELIGINNRNLETFEVDNSNTKKLLEGERG 339 (398)
Q Consensus 270 aiL---~~~~-L~~Li~~a~~LGL~~LVEV-----ht~eEl~rAl-~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~ 339 (398)
-.. +++. ..++...+...++.+++=- -+.+.+.+.. +. ..++||-.. ..|+....+++...
T Consensus 110 P~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~--pni~giK~s-----~~d~~~~~~~~~~~-- 180 (303)
T PRK03620 110 PYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC--PNLVGFKDG-----VGDIELMQRIVRAL-- 180 (303)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEeC-----CCCHHHHHHHHHHc--
Confidence 754 4444 5556566777788776421 1456666665 43 479999743 34677777776542
Q ss_pred cccccCCceEEEecCCCCHHH-HHHHHHcCCCEEEEcccccCCCChHHHH
Q 015899 340 EIIRQKNIIVVGESGLFTPDD-IAYVQEAGVKAVLVGESIVKQDDPGKGI 388 (398)
Q Consensus 340 ~~i~~~~v~vVAESGI~t~eD-~~~l~~~GadaVLVGeaLmk~~dp~~~i 388 (398)
+.+..++ +|..+-+. +-.+..+|++|.+.|.+-+-++-..+..
T Consensus 181 ----~~~f~vl--~G~d~~e~~~~~~~~~G~~G~is~~an~~P~~~~~l~ 224 (303)
T PRK03620 181 ----GDRLLYL--GGLPTAEVFAAAYLALGVPTYSSAVFNFVPEIALAFY 224 (303)
T ss_pred ----CCCeEEE--eCCCcchhhHHHHHhCCCCEEEecHHhhhHHHHHHHH
Confidence 2344333 44432222 3445678999999887766544433333
No 436
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.08 E-value=0.83 Score=46.71 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCcEEEEeccC----------------------CcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015899 200 VEIARSYEKGGAACLSILTDE----------------------KYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~----------------------~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eA 257 (398)
.+.|+..++.|+++|-|-.-. .|.....+-|..+++..+++||+.-..|.++.++.++
T Consensus 200 ~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~ 279 (352)
T PRK05437 200 KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKA 279 (352)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 588999999999999983210 0111123456666664248999999999999999999
Q ss_pred HHcCcCEEEEeccCCC
Q 015899 258 RTKGADAVLLIAAVLP 273 (398)
Q Consensus 258 r~~GADaVLLiaaiL~ 273 (398)
.++|||+|.+...+|.
T Consensus 280 l~~GAd~v~ig~~~l~ 295 (352)
T PRK05437 280 LALGADAVGMAGPFLK 295 (352)
T ss_pred HHcCCCEEEEhHHHHH
Confidence 9999999999877663
No 437
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=92.04 E-value=0.62 Score=48.05 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=40.8
Q ss_pred CceEEEecCCCCHHHHHHHHHcC-CCEEEEcccccCCCChHHHHHh
Q 015899 346 NIIVVGESGLFTPDDIAYVQEAG-VKAVLVGESIVKQDDPGKGITG 390 (398)
Q Consensus 346 ~v~vVAESGI~t~eD~~~l~~~G-adaVLVGeaLmk~~dp~~~i~~ 390 (398)
++++++.|||.+++++.++.+.| +|.|-+|.+++..+|....+++
T Consensus 305 ~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 57899999999999999999876 9999999999999998777754
No 438
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=92.01 E-value=0.31 Score=49.69 Aligned_cols=94 Identities=30% Similarity=0.344 Sum_probs=70.6
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEec-cCCcCCC----C---HHHH
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT-DEKYFKG----S---FENL 230 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLT-d~~~F~G----s---~edL 230 (398)
++.+|.+.++.. + ..+++-+ .-...|+.+++.|+++|-+-- |-+-..| + +.-+
T Consensus 115 ~~~~~i~~~~~~----g-~~v~~~v--------------~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv 175 (336)
T COG2070 115 PPAEFVARLKAA----G-IKVIHSV--------------ITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALV 175 (336)
T ss_pred CcHHHHHHHHHc----C-CeEEEEe--------------CCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHH
Confidence 577888888763 1 2344333 224789999999999987752 2222333 2 4556
Q ss_pred HHHHhcCCC-CcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 231 EAVRSAGVK-CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 231 ~~Ir~a~v~-lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.+|++. ++ +||+.-..|-|..+|..|...|||+|-+.++.+
T Consensus 176 ~ev~~~-~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl 217 (336)
T COG2070 176 PEVVDA-VDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 217 (336)
T ss_pred HHHHHH-hcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhh
Confidence 677776 88 999999999999999999999999999999977
No 439
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=92.01 E-value=0.32 Score=47.05 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 227 FENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 227 ~edL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
.+.++.+|+. + ++||.....|.++.|+.++..+|||.|.+...+.++
T Consensus 167 ~e~i~~v~~~-~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 167 PELVAEVKKV-LDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHHH-cCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 7889999986 6 899999999999999999999999999998888765
No 440
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.00 E-value=0.16 Score=51.55 Aligned_cols=81 Identities=21% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEec----cCCcCCC--CHHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCcCEEEEe
Q 015899 197 FDPVEIARSYEKGGAACLSILT----DEKYFKG--SFENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLT----d~~~F~G--s~edL~~Ir~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (398)
.+..++++.+++.|++.|+|-. ...+..+ ...++..+++. + ++||+.-+.|.++.+..++...|||.|.+.
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~-~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~g 313 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKER-IAGRLPLIAVGSINTPDDALEALETGADLVAIG 313 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCChHHHh
Confidence 3567889999999999999842 2222111 35667778775 5 899999888899999999998899999998
Q ss_pred ccCCChHHHH
Q 015899 269 AAVLPDLDIR 278 (398)
Q Consensus 269 aaiL~~~~L~ 278 (398)
-.++.+.++-
T Consensus 314 R~liadPdl~ 323 (353)
T cd04735 314 RGLLVDPDWV 323 (353)
T ss_pred HHHHhCccHH
Confidence 7777665543
No 441
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=91.94 E-value=5 Score=39.61 Aligned_cols=104 Identities=24% Similarity=0.189 Sum_probs=72.0
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHH-HHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHH
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQI 254 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY-~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI 254 (398)
...|.|.|+...-+. + .+.+..+.++.. +.++|++|-|=-...--.=++++|+.+|+. +++|||..-+ +++.-|
T Consensus 140 ~v~ilaDV~~kh~~~--l-~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~-~~~PVlvGSG-vt~~Ni 214 (254)
T PF03437_consen 140 DVKILADVHVKHSSP--L-ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREA-VPVPVLVGSG-VTPENI 214 (254)
T ss_pred CeEEEeeechhhccc--C-CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhc-CCCCEEEecC-CCHHHH
Confidence 378999987663321 1 134677777665 789999998731111112278899999997 7899998776 677778
Q ss_pred HHHHHcCcCEEEEeccCC---------ChHHHHHHHHHHH
Q 015899 255 YYARTKGADAVLLIAAVL---------PDLDIRYMTKICK 285 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL---------~~~~L~~Li~~a~ 285 (398)
.+... -||+++..+.+- +.+..++|++.++
T Consensus 215 ~~~l~-~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 215 AEYLS-YADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred HHHHH-hCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 77764 399999988763 3455777776654
No 442
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.92 E-value=10 Score=36.22 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=84.3
Q ss_pred HHHHHHHcCcCEEEEeccCC----Ch--------HHHHHHHHHHHHcCCcEEEEcC---------CHHHHHHHhccCCCc
Q 015899 253 QIYYARTKGADAVLLIAAVL----PD--------LDIRYMTKICKLLGLTALVEVH---------DEREMDRVLGIEGIE 311 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL----~~--------~~L~~Li~~a~~LGL~~LVEVh---------t~eEl~rAl~l~Ga~ 311 (398)
.|..|...||..|.+..... +. +.|+++.++|.+.|+...+|.| |.+++.+.++.-+-+
T Consensus 95 ~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~~~~l~~~~~~~ 174 (275)
T PRK09856 95 AMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALALVPSP 174 (275)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHHHHHHHHHcCCC
Confidence 36678899999998754321 11 1378889999999999999975 467887777743434
Q ss_pred EEeeccccCcc---cccChhhH-HHHhhhhccccccc-----CCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC-C
Q 015899 312 LIGINNRNLET---FEVDNSNT-KKLLEGERGEIIRQ-----KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK-Q 381 (398)
Q Consensus 312 iIGINnRdL~t---f~vDl~~t-~~L~~~i~~~~i~~-----~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk-~ 381 (398)
-+|++ .|... -.-|+... .++.+.+..=.+.. ..-....+|-|.-.+-++.+.+.|+++.++=|-... .
T Consensus 175 ~v~~~-~D~~h~~~~~~~~~~~i~~~~~rI~~vHi~D~~~~~~~~~~pG~G~id~~~i~~~L~~~gy~g~~~lE~~~~~~ 253 (275)
T PRK09856 175 RLFSM-VDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIDRGYEGYCTVELVTMYM 253 (275)
T ss_pred cceeE-EeecchhcCCCCHHHHHHHhCCcEEEEEEEcCCCCCCCCcCCCCCCCCHHHHHHHHHHcCCCceEEEEeccccc
Confidence 56664 22211 11233222 22222111000100 012345778887788888899999999999998754 5
Q ss_pred CChHHHHHhh
Q 015899 382 DDPGKGITGL 391 (398)
Q Consensus 382 ~dp~~~i~~L 391 (398)
.+|...+++-
T Consensus 254 ~~p~~~~~~~ 263 (275)
T PRK09856 254 NEPRLYARQA 263 (275)
T ss_pred cCHHHHHHHH
Confidence 6666665543
No 443
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=91.88 E-value=4.1 Score=37.23 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=70.1
Q ss_pred HHHHHHHcCcCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChh
Q 015899 253 QIYYARTKGADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNS 328 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~ 328 (398)
++.++...|++.|.|-..-+++.+ +.++...|+..|+..++. + ..+.|.++ |++-+=+...++ +..
T Consensus 18 ~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~--~--~~~la~~~-g~~GvHl~~~~~-----~~~ 87 (196)
T TIGR00693 18 RVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVN--D--RVDLALAL-GADGVHLGQDDL-----PAS 87 (196)
T ss_pred HHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEE--C--HHHHHHHc-CCCEEecCcccC-----CHH
Confidence 577788899999988766666554 444556667779888874 3 34556666 776444442222 333
Q ss_pred hHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 329 NTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 329 ~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
...+++. .+ .+....+++.+++.++.+.|+|-+.+|.-+..
T Consensus 88 ~~r~~~~---------~~--~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t 128 (196)
T TIGR00693 88 EARALLG---------PD--KIIGVSTHNLEELAEAEAEGADYIGFGPIFPT 128 (196)
T ss_pred HHHHhcC---------CC--CEEEEeCCCHHHHHHHhHcCCCEEEECCccCC
Confidence 3333322 12 23356699999999999999999998876654
No 444
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=91.80 E-value=0.7 Score=46.93 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHcC-CcEEEEec---c----------CCcCCCC--HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC
Q 015899 198 DPVEIARSYEKGG-AACLSILT---D----------EKYFKGS--FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG 261 (398)
Q Consensus 198 dp~~iA~aY~~~G-A~aISVLT---d----------~~~F~Gs--~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~G 261 (398)
+..++|+.+++.| ++.|+|-. . +.++... .+..+.+|+. +++||+.-+-|.++.++.++.+.|
T Consensus 229 e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-~~ipvi~~G~i~~~~~~~~~l~~~ 307 (343)
T cd04734 229 EALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAG 307 (343)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-cCCCEEeeCCCCCHHHHHHHHHcC
Confidence 5678899999998 89999831 1 1123222 4666788887 899999988889999999998865
Q ss_pred -cCEEEEeccCCChHHHHH
Q 015899 262 -ADAVLLIAAVLPDLDIRY 279 (398)
Q Consensus 262 -ADaVLLiaaiL~~~~L~~ 279 (398)
||.|.+.-.+|.+.++-.
T Consensus 308 ~~D~V~~gR~~ladP~l~~ 326 (343)
T cd04734 308 HADMVGMTRAHIADPHLVA 326 (343)
T ss_pred CCCeeeecHHhHhCccHHH
Confidence 999999888887766543
No 445
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.78 E-value=13 Score=37.24 Aligned_cols=162 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHH----HcCCcEEEE-------eccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCc
Q 015899 199 PVEIARSYE----KGGAACLSI-------LTDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGA 262 (398)
Q Consensus 199 p~~iA~aY~----~~GA~aISV-------LTd~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GA 262 (398)
..++|+... +.|+..+.= -|-+..|+| +++.|+.+++. ..+||+- |. -+++|+..+... +
T Consensus 32 ~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~-~GlpvvT-eV-~~~~~~~~~ae~-v 107 (281)
T PRK12457 32 TLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKAR-FGVPVIT-DV-HEVEQAAPVAEV-A 107 (281)
T ss_pred HHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HCCceEE-Ee-CCHHHHHHHhhh-C
Q ss_pred CEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhcc---CCCcEEeeccc----cCcccccChhhHHH
Q 015899 263 DAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVLGI---EGIELIGINNR----NLETFEVDNSNTKK 332 (398)
Q Consensus 263 DaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l---~Ga~iIGINnR----dL~tf~vDl~~t~~ 332 (398)
|.+=+.+...-+ -+|++.+...|..+++-=. +.+|...|.+- .|..-|....| .++++.+|+...-.
T Consensus 108 DilQIgAr~~rn---tdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~ 184 (281)
T PRK12457 108 DVLQVPAFLARQ---TDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQ 184 (281)
T ss_pred eEEeeCchhhch---HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHH
Q ss_pred HhhhhcccccccCCceEEEecCCC-----------------CHHHHHHHHHcCCCEEEE
Q 015899 333 LLEGERGEIIRQKNIIVVGESGLF-----------------TPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 333 L~~~i~~~~i~~~~v~vVAESGI~-----------------t~eD~~~l~~~GadaVLV 374 (398)
+.+.. .+.+||.---=. =+.-++....+|+||++|
T Consensus 185 mk~~~-------t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 185 MKRTT-------GDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred HHhhC-------CCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
No 446
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=91.77 E-value=5.7 Score=38.86 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEe----ccccCCHHH-HHHHHHcCcCEEEEeccCC
Q 015899 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC----KEFIVDAWQ-IYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~----KDFIid~~Q-I~eAr~~GADaVLLiaaiL 272 (398)
.+.++++.... -+..+-|- -|-|+.++..-++.+++. .. ||+. -|.--+-.. +..+...|||+|.+ ....
T Consensus 25 ~~~~~~~~~~~-~~~~~Kvg-~~l~~~~g~~~~~el~~~-~~-~VflDlK~~DIpnT~~~~~~~~~~~g~d~vtv-H~~~ 99 (240)
T COG0284 25 EALAFVDKLGP-TVDFVKVG-KPLVAFFGADILEELKAR-GK-KVFLDLKLADIPNTVALAAKAAADLGADAVTV-HAFG 99 (240)
T ss_pred HHHHHHHHhhc-cccEEEEc-hHHHHhccHHHHHHHHHh-CC-ceEEeeecccchHHHHHHHHHhhhcCCcEEEE-eCcC
Confidence 34455555544 34555553 455666777789999875 33 6762 343222222 33346789999988 4556
Q ss_pred ChHHHHHHHHHHHHcC--CcEEEEcCCHHHHH------------HHhcc----CCCcEEeeccccCcccccChhhHHHHh
Q 015899 273 PDLDIRYMTKICKLLG--LTALVEVHDEREMD------------RVLGI----EGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 273 ~~~~L~~Li~~a~~LG--L~~LVEVht~eEl~------------rAl~l----~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
..+-++.+.+.+...| +-++..-.+..+.+ .++++ ..+-++|+- +..+....+.
T Consensus 100 G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv--------~~~~e~~~ir 171 (240)
T COG0284 100 GFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVV--------CSAEEVAAIR 171 (240)
T ss_pred CHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEE--------cCHHHHHHHH
Confidence 6667899998888776 33344444444432 11110 011123332 1233333333
Q ss_pred hhhcccccccCCceEE-----E------ecCCCCHHHHHHHHHcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 335 EGERGEIIRQKNIIVV-----G------ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vV-----A------ESGI~t~eD~~~l~~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
.. .+.+..++ + .+|+-||.++ ..+|+|-++||.+|+.++||.++++++..
T Consensus 172 ~~------~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A---~~~Gad~ivVGR~I~~a~~p~~a~~~i~~ 232 (240)
T COG0284 172 EI------LGPDFLILTPGIGAGSQGGDQGRVMTPGEA---VRAGADYIVVGRPITQAGDPVAAARAIAR 232 (240)
T ss_pred Hh------cCCCcEEECCCcCcCcCCCCcccccCHHHH---HhcCCCEEEEChhhhcCCChHHHHHHHHH
Confidence 22 11122222 2 3444456554 44899999999999999999999987653
No 447
>PRK07094 biotin synthase; Provisional
Probab=91.74 E-value=15 Score=36.47 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH----HHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC--
Q 015899 199 PVEIARSYEKGGAACLSILTDEKYFKGSFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL-- 272 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~----~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL-- 272 (398)
..+.++.+.+.|+..+.+......+- ..+++. .+++. .++++-.--...++.++...+.+|+|.|.+.....
T Consensus 75 i~~~~~~~~~~g~~~i~l~gG~~~~~-~~~~l~~l~~~i~~~-~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~ 152 (323)
T PRK07094 75 ILECAKKAYELGYRTIVLQSGEDPYY-TDEKIADIIKEIKKE-LDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADK 152 (323)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCC-CHHHHHHHHHHHHcc-CCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCH
Confidence 44556667778999888764322221 234443 33442 35555322234678889899999999999866543
Q ss_pred ----------ChHHHHHHHHHHHHcCCcE----EEE--cCCHHHHHH----HhccCCCcEEeeccccC------ccc-cc
Q 015899 273 ----------PDLDIRYMTKICKLLGLTA----LVE--VHDEREMDR----VLGIEGIELIGINNRNL------ETF-EV 325 (398)
Q Consensus 273 ----------~~~~L~~Li~~a~~LGL~~----LVE--Vht~eEl~r----Al~l~Ga~iIGINnRdL------~tf-~v 325 (398)
+.++..+.++.+++.|+.+ ++- -.|.+++.. +.++ +++.++++.... ... ..
T Consensus 153 ~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l-~~~~v~~~~~~P~pgTpl~~~~~~ 231 (323)
T PRK07094 153 ELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKEL-DLDMIGIGPFIPHPDTPLKDEKGG 231 (323)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhC-CCCeeeeeccccCCCCCcccCCCC
Confidence 2345566677788888765 444 346666444 5555 788888874321 111 23
Q ss_pred ChhhHHHHhhhhcccccccCCceEEEecCC--CCHHHHHHHHHcCCCEEE
Q 015899 326 DNSNTKKLLEGERGEIIRQKNIIVVGESGL--FTPDDIAYVQEAGVKAVL 373 (398)
Q Consensus 326 Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI--~t~eD~~~l~~~GadaVL 373 (398)
+++...+++...|- .++..++... +|. -.++-...+..+||+.+.
T Consensus 232 ~~~~~~~~~a~~R~-~lp~~~i~~~--~~~~~~~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 232 SLELTLKVLALLRL-LLPDANIPAT--TALGTLNPDGREKGLKAGANVVM 278 (323)
T ss_pred CHHHHHHHHHHHHH-hCcCCCCccc--CCccccCchhHHHHHHcCCceec
Confidence 44444444443221 1211223222 332 245555778899999775
No 448
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.66 E-value=1.1 Score=44.51 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCC--CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 227 FENLEAVRSAGV--KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 227 ~edL~~Ir~a~v--~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+..+..+++. + ++||+.-..|.+..++.+...+|||+|-+..+++
T Consensus 230 l~~v~~~~~~-~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 230 LGNVRTFRRL-LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALG 276 (294)
T ss_pred HHHHHHHHHh-cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhh
Confidence 3566777776 6 5999999999999999999999999999998877
No 449
>PRK04302 triosephosphate isomerase; Provisional
Probab=91.64 E-value=0.94 Score=43.00 Aligned_cols=80 Identities=24% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCC--------CHHHHH----HHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEe
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKG--------SFENLE----AVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI 268 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~G--------s~edL~----~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLi 268 (398)
+.++.+.+.|...|.+. |.|..| .++.+. .+|+...++||+....|-++-++.++...|||+|++.
T Consensus 125 ~~~~~~~~~~~~~I~~~--p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 125 ETSAAAAALGPDYVAVE--PPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHhcCCCCEEEEe--CccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 34555667788887763 222212 244443 4666323799999888889999999999999999999
Q ss_pred ccCCChHHHHHHHH
Q 015899 269 AAVLPDLDIRYMTK 282 (398)
Q Consensus 269 aaiL~~~~L~~Li~ 282 (398)
.+++..++....++
T Consensus 203 sa~l~~~~~~~~~~ 216 (223)
T PRK04302 203 SGVVKAKDPEAALR 216 (223)
T ss_pred hHHhCCcCHHHHHH
Confidence 99997655544443
No 450
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.63 E-value=0.35 Score=47.69 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCcEEeccccCC-HHHHHHHHHcCcCEEEEeccCC
Q 015899 228 ENLEAVRSAGVKCPLLCKEFIVD-AWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 228 edL~~Ir~a~v~lPVL~KDFIid-~~QI~eAr~~GADaVLLiaaiL 272 (398)
+.++.+|+. +++||.. ||.|. +.|+.+...+|||+|+.+.+++
T Consensus 192 ~~i~~ir~~-t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 192 KLIETIKKM-TNKPIIL-GFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHh-cCCCEEE-ECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 456677886 8999998 66655 9999999999999999999874
No 451
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.62 E-value=1.3 Score=44.47 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHH-HHHHcCCc--------EEEEeccCCcCCCCH-H
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIAR-SYEKGGAA--------CLSILTDEKYFKGSF-E 228 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~-aY~~~GA~--------aISVLTd~~~F~Gs~-e 228 (398)
.++.|.+++.+ .-..|+.=.|.-|-- | .+++ +...||+. +|-+-..--.|-|++ +
T Consensus 121 ~T~~~V~~~~~------~~~~i~~TRKT~PG~---R------~l~k~AV~~GGG~~HR~gLsD~iLIkdNHi~~~g~i~~ 185 (290)
T PRK06559 121 MTAAYVEALGD------DRIKVFDTRKTTPNL---R------LFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQK 185 (290)
T ss_pred HHHHHHHHhcC------CCeEEEeecCCCCcc---h------HHHHHHHHhcCCcccCCCCcceEEEcHHHHHhhccHHH
Confidence 45778887743 235788777777742 2 2332 23344543 333322222344554 5
Q ss_pred HHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHH
Q 015899 229 NLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRV 304 (398)
Q Consensus 229 dL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rA 304 (398)
-++.+|+... ..+|..-= -+..|+.+|..+|||.|+|+- ++++++++.++..+. .+++|++ |++-+...
T Consensus 186 av~~~r~~~~~~~kIeVEv--~tleea~~a~~agaDiImLDn--mspe~l~~av~~~~~---~~~leaSGGI~~~ni~~y 258 (290)
T PRK06559 186 AIAQARAYAPFVKMVEVEV--ESLAAAEEAAAAGADIIMLDN--MSLEQIEQAITLIAG---RSRIECSGNIDMTTISRF 258 (290)
T ss_pred HHHHHHHhCCCCCeEEEEC--CCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhcC---ceEEEEECCCCHHHHHHH
Confidence 5777776411 23343211 356899999999999999976 888899999986653 6889998 88888888
Q ss_pred hccCCCcEEeecc
Q 015899 305 LGIEGIELIGINN 317 (398)
Q Consensus 305 l~l~Ga~iIGINn 317 (398)
... |+|+|.+..
T Consensus 259 A~t-GVD~Is~ga 270 (290)
T PRK06559 259 RGL-AIDYVSSGS 270 (290)
T ss_pred Hhc-CCCEEEeCc
Confidence 886 999999873
No 452
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.58 E-value=0.83 Score=45.72 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=93.0
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEec--cCC-------cCCC---C
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILT--DEK-------YFKG---S 226 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLT--d~~-------~F~G---s 226 (398)
.++.|.++++... .-.-|+.=.|..|-- -.+++-....|....|-+. |.- .|-| +
T Consensus 109 ~T~~~V~~~~~~~----~~~~I~~TRKT~Pg~---------R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~ 175 (284)
T PRK06096 109 YLAQMLALLRERY----PDGNIACTRKAIPGT---------RLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQD 175 (284)
T ss_pred HHHHHHHHHHhhC----CCcEEEecCcCCCch---------hHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCccc
Confidence 4678888887532 224566666666742 2455555666665556432 221 1223 2
Q ss_pred H-HHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHH
Q 015899 227 F-ENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMD 302 (398)
Q Consensus 227 ~-edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~ 302 (398)
+ +-++.+|+.....+|.. +. -+..|+.+|..+|||.|+|+- ++++++++.++..++.+..+.+|++ |++.+.
T Consensus 176 i~~av~~~r~~~~~~kIeV-Ev-~tleqa~ea~~agaDiI~LDn--~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~ 251 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVV-EA-DTPKEAIAALRAQPDVLQLDK--FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLK 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEE-EC-CCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHH
Confidence 2 34555565412233321 11 366799999999999999964 8888999999987766678899998 899988
Q ss_pred HHhccCCCcEEeecc
Q 015899 303 RVLGIEGIELIGINN 317 (398)
Q Consensus 303 rAl~l~Ga~iIGINn 317 (398)
..... |+++|.+..
T Consensus 252 ~yA~t-GvD~Is~ga 265 (284)
T PRK06096 252 NYADC-GIRLFITSA 265 (284)
T ss_pred HHHhc-CCCEEEECc
Confidence 88887 999997763
No 453
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.44 E-value=1.7 Score=43.77 Aligned_cols=136 Identities=20% Similarity=0.226 Sum_probs=87.4
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHH-HHcCCc--------EEEEeccCCcCCCCHHH
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAA--------CLSILTDEKYFKGSFEN 229 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY-~~~GA~--------aISVLTd~~~F~Gs~ed 229 (398)
.++.|.+++.+ ....|+.=.|..|-- | .+.+-. .-||+. +|-+-..--.|-|+.+.
T Consensus 130 ~T~~~V~~~~~------~~~~I~dTRKT~PGl---R------~lekyAV~~GGG~nHR~gLsD~vLIkdNHi~~~G~i~~ 194 (294)
T PRK06978 130 ATRRYVDRIAG------TRARILDTRKTLPGL---R------LAQKYAVRVGGGENQRLALYDGILIKENHIAAAGGVGA 194 (294)
T ss_pred HHHHHHHHhhC------CCcEEEecCCCCCch---h------HHHHHHHHhcCCcCcCCCCCceEEEeHHHHHHhCCHHH
Confidence 46778888843 236788888877842 2 233322 234442 33332222224566554
Q ss_pred -HHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHh
Q 015899 230 -LEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DEREMDRVL 305 (398)
Q Consensus 230 -L~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl 305 (398)
++.+|+.....+|..-- -+..|+.+|..+|||.|+|+- ++++++++.++..+. .+.+|++ |++-+....
T Consensus 195 av~~~r~~~~~~kIeVEv--etleea~eA~~aGaDiImLDn--mspe~l~~av~~~~~---~~~lEaSGGIt~~ni~~yA 267 (294)
T PRK06978 195 ALDAAFALNAGVPVQIEV--ETLAQLETALAHGAQSVLLDN--FTLDMMREAVRVTAG---RAVLEVSGGVNFDTVRAFA 267 (294)
T ss_pred HHHHHHHhCCCCcEEEEc--CCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHH
Confidence 66666542223332111 256799999999999999976 788889998886643 6789987 888888888
Q ss_pred ccCCCcEEeecc
Q 015899 306 GIEGIELIGINN 317 (398)
Q Consensus 306 ~l~Ga~iIGINn 317 (398)
.. |+|+|.+..
T Consensus 268 ~t-GVD~IS~ga 278 (294)
T PRK06978 268 ET-GVDRISIGA 278 (294)
T ss_pred hc-CCCEEEeCc
Confidence 86 999998873
No 454
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.32 E-value=1.3 Score=41.46 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=68.4
Q ss_pred eccccCCHHHHHHHHHcC-cCEEEEeccCCChHHHHHHHHHHHHcCCcEE-----EEcCCHHHHHHHhccCCCcEEeecc
Q 015899 244 CKEFIVDAWQIYYARTKG-ADAVLLIAAVLPDLDIRYMTKICKLLGLTAL-----VEVHDEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 244 ~KDFIid~~QI~eAr~~G-ADaVLLiaaiL~~~~L~~Li~~a~~LGL~~L-----VEVht~eEl~rAl~l~Ga~iIGINn 317 (398)
.+++--|++-+...+..+ +|+|+=- =..++++|+++||-++ ++-.+.+-..+.++-..+|.|=+-.
T Consensus 54 i~Gl~~D~~~i~~L~~~~~~dGIIST--------k~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilP 125 (175)
T PF04309_consen 54 IEGLSRDEAGIEYLKEYGKPDGIIST--------KSNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILP 125 (175)
T ss_dssp EETB-SSHHHHHHHHHTT--SEEEES--------SHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEES
T ss_pred cCCCCCCHHHHHHHHHcCCCcEEEeC--------CHHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEch
Confidence 345568999888887776 9997641 1468899999999984 4444444444444333566654432
Q ss_pred ccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 318 RNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 318 RdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
...-++++.++. ..++++||.|=|.|.+|+..+.++||.||--+
T Consensus 126 ----------g~~p~vi~~i~~----~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 126 ----------GVMPKVIKKIRE----ETNIPIIAGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp ----------CCHHHHHCCCCC----CCSS-EEEESS--SHHHHHHHCCTTCEEEEE-
T ss_pred ----------HHHHHHHHHHHH----hcCCCEEeecccCCHHHHHHHHHcCCEEEEcC
Confidence 122344444321 23678999999999999999999999998654
No 455
>PLN02979 glycolate oxidase
Probab=91.24 E-value=1.5 Score=45.48 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCcEEEEeccCC----cCCCCHHHHHHHHhc-CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 200 VEIARSYEKGGAACLSILTDEK----YFKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~----~F~Gs~edL~~Ir~a-~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.+-|+...+.|+++|-|-.=.+ +.-...+-|.+++++ .-++||+.-..|.+..+|..|.++|||+|.+.-..|
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 4667777888999997732110 000135677777765 125999999999999999999999999999987665
No 456
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=91.12 E-value=16 Score=35.72 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCcEEEEe-ccCCcCCCCHHHHHH----HHhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEEe
Q 015899 199 PVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEA----VRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (398)
Q Consensus 199 p~~iA~aY~~~GA~aISVL-Td~~~F~Gs~edL~~----Ir~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (398)
..++.+.+.+.|.++|-++ |--+|+.=+.+.-.. +.+. .-.+||+..=.-.+.. ....|..+|||+|+++
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 3456777889999999996 222233223332222 2221 2468998532222332 3445678999999998
Q ss_pred ccC---CChHH-HHHHHHHHHHcCCcEEEEcC--------CHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhh
Q 015899 269 AAV---LPDLD-IRYMTKICKLLGLTALVEVH--------DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEG 336 (398)
Q Consensus 269 aai---L~~~~-L~~Li~~a~~LGL~~LVEVh--------t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~ 336 (398)
.-. .++++ .+++-+.+...++.+++=-+ +.+.+.+..+. ..++|+-.. ..|+....++...
T Consensus 104 ~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~--~nv~giK~s-----~~~~~~~~~~~~~ 176 (289)
T PF00701_consen 104 PPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAKI--PNVVGIKDS-----SGDLERLIQLLRA 176 (289)
T ss_dssp ESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTS--TTEEEEEES-----SSBHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhcC--CcEEEEEcC-----chhHHHHHHHhhh
Confidence 664 35555 55555667677888876433 44556665554 469998732 2344555565554
Q ss_pred hcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 337 ERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 337 i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
. +.+ +.|..| +-+.+...+.+|++|++.|.+-+-+
T Consensus 177 ~------~~~-~~v~~G---~d~~~~~~l~~G~~G~is~~~n~~P 211 (289)
T PF00701_consen 177 V------GPD-FSVFCG---DDELLLPALAAGADGFISGLANVFP 211 (289)
T ss_dssp S------STT-SEEEES---SGGGHHHHHHTTSSEEEESGGGTHH
T ss_pred c------ccC-eeeecc---ccccccccccccCCEEEEcccccCh
Confidence 1 234 334443 3334677788999999999876643
No 457
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=91.09 E-value=6.9 Score=38.84 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred ccCCcCCC-----CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEE
Q 015899 218 TDEKYFKG-----SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTAL 292 (398)
Q Consensus 218 Td~~~F~G-----s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~L 292 (398)
|-+..|+| +++.|+.+++. ..+||+- =|-++.|+..+... +|.+=+.+...-+ -+|++.+...|.-++
T Consensus 48 Tsp~sFqG~G~eeGL~iL~~vk~~-~glpvvT--eV~~~~~~~~vae~-vDilQIgArn~rn---~~LL~a~g~t~kpV~ 120 (258)
T TIGR01362 48 SSIHSFRGPGLEEGLKILQKVKEE-FGVPILT--DVHESSQCEPVAEV-VDIIQIPAFLCRQ---TDLLVAAAKTGRIVN 120 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-hCCceEE--EeCCHHHHHHHHhh-CcEEEeCchhcch---HHHHHHHhccCCeEE
Q ss_pred EEcC---CHHHHHHHhcc----CCCcEE----eeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCC-----
Q 015899 293 VEVH---DEREMDRVLGI----EGIELI----GINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF----- 356 (398)
Q Consensus 293 VEVh---t~eEl~rAl~l----~Ga~iI----GINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~----- 356 (398)
+-=. +.+|...+.+- .+-++| |+ ...++++.+|+...--+.+. +.+||.---=.
T Consensus 121 lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~-tf~y~r~~~D~~~ip~~k~~---------~~PVi~DpSHsvq~pg 190 (258)
T TIGR01362 121 VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGT-SFGYNNLVVDMRSLPIMREL---------GCPVIFDATHSVQQPG 190 (258)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCC-CcCCCCcccchhhhHHHHhc---------CCCEEEeCCccccCCC
Q ss_pred ------------CHHHHHHHHHcCCCEEEE
Q 015899 357 ------------TPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 357 ------------t~eD~~~l~~~GadaVLV 374 (398)
-+.-++....+|+||++|
T Consensus 191 ~~g~~s~G~r~~v~~la~AAvA~GaDGl~i 220 (258)
T TIGR01362 191 GLGGASGGLREFVPTLARAAVAVGIDGLFM 220 (258)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHhCCCEEEE
No 458
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=91.06 E-value=1.4 Score=43.12 Aligned_cols=76 Identities=25% Similarity=0.408 Sum_probs=56.4
Q ss_pred CCCcEEeeccccCccc----ccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCCC
Q 015899 308 EGIELIGINNRNLETF----EVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383 (398)
Q Consensus 308 ~Ga~iIGINnRdL~tf----~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~d 383 (398)
.||+.+=+. ||..- ..+.+...++++. .++.+=-.|||.|.++++++.++|++.|++|+.-++.++
T Consensus 43 ~Ga~~lHlV--DLdgA~~g~~~n~~~i~~i~~~--------~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~ 112 (241)
T COG0106 43 QGAEWLHLV--DLDGAKAGGPRNLEAIKEILEA--------TDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPD 112 (241)
T ss_pred cCCcEEEEe--eccccccCCcccHHHHHHHHHh--------CCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHH
Confidence 477765443 23221 2334555666654 356777799999999999999999999999999999988
Q ss_pred hHHHHHhhhc
Q 015899 384 PGKGITGLFG 393 (398)
Q Consensus 384 p~~~i~~L~~ 393 (398)
..+.+.+.++
T Consensus 113 ~v~~~~~~~g 122 (241)
T COG0106 113 LVKELCEEYG 122 (241)
T ss_pred HHHHHHHHcC
Confidence 8877777776
No 459
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=90.92 E-value=1.4 Score=45.02 Aligned_cols=88 Identities=23% Similarity=0.389 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
.+.|+.|.++++++||.++.|+++.++++.+.++ ++++-|..|+.+++ ....++.+ .+.+|+..-
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~--vd~lqIgAr~~~N~----~LL~~va~---------~~kPViLk~ 207 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY--VDILQIGARNMQNF----DLLKEVGK---------TNKPVLLKR 207 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--CCeEEECcccccCH----HHHHHHHc---------CCCcEEEeC
Confidence 5569999999999999999999999999999885 79999999988653 22233322 467899999
Q ss_pred CCC-CHHHHH----HHHHcCCCEEEEcc
Q 015899 354 GLF-TPDDIA----YVQEAGVKAVLVGE 376 (398)
Q Consensus 354 GI~-t~eD~~----~l~~~GadaVLVGe 376 (398)
|.. |.+++. ++...|-+-+.+-+
T Consensus 208 G~~~ti~E~l~A~e~i~~~GN~~viL~e 235 (335)
T PRK08673 208 GMSATIEEWLMAAEYILAEGNPNVILCE 235 (335)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 988 888764 45566886666655
No 460
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=90.92 E-value=1.6 Score=45.12 Aligned_cols=73 Identities=21% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCc----CCCCHHHHHHHHhc-CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 200 VEIARSYEKGGAACLSILTDEKY----FKGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVLTd~~~----F~Gs~edL~~Ir~a-~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.+-|+...+.|+++|-|-.=.+- ...+.+-|.+|+++ .-++||+.-..|.+..+|..|.+.|||+|.+.-.+|
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 46677778889999988321110 01236677777764 125999999999999999999999999999987665
No 461
>PLN02591 tryptophan synthase
Probab=90.89 E-value=0.62 Score=45.69 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 229 NLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 229 dL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
.++.+|+. +++||++.=.|-++.|+.++..+|||+|+...+++
T Consensus 180 ~i~~vk~~-~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 180 LLQELKEV-TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHhc-CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 37788986 89999995555669999999999999999998874
No 462
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=90.83 E-value=4.9 Score=40.18 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=82.1
Q ss_pred HHHHHhcCCCCcEEe--ccccCCHHH----HHHHHHcCcCEEEE-e---------------ccCCChHHHHHHHHHHHHc
Q 015899 230 LEAVRSAGVKCPLLC--KEFIVDAWQ----IYYARTKGADAVLL-I---------------AAVLPDLDIRYMTKICKLL 287 (398)
Q Consensus 230 L~~Ir~a~v~lPVL~--KDFIid~~Q----I~eAr~~GADaVLL-i---------------aaiL~~~~L~~Li~~a~~L 287 (398)
++.|..+ +++||+. .+. .++.+ |.+...+|+.+|.+ + ..+++.++..+-++.++..
T Consensus 70 ~~~I~~a-~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a 147 (285)
T TIGR02320 70 VEFMFDV-TTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA 147 (285)
T ss_pred HHHHHhh-cCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh
Confidence 3444554 7999873 334 67766 44567899999999 1 1356776766666766642
Q ss_pred --CCcEEEEcC--------CHHHH----HHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 288 --GLTALVEVH--------DEREM----DRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 288 --GL~~LVEVh--------t~eEl----~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
+-++++=.+ ..+|. ....++ ||+.|-+-. ...|.+...++.+.++. .+++ ++++.-.
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eA-GAD~ifv~~-----~~~~~~ei~~~~~~~~~-~~p~--~pl~~~~ 218 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEA-GADGIMIHS-----RKKDPDEILEFARRFRN-HYPR--TPLVIVP 218 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHc-CCCEEEecC-----CCCCHHHHHHHHHHhhh-hCCC--CCEEEec
Confidence 434433222 23332 334565 999988851 12355666666665321 1112 2333322
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcccccCC
Q 015899 354 GLFTPDDIAYVQEAGVKAVLVGESIVKQ 381 (398)
Q Consensus 354 GI~t~eD~~~l~~~GadaVLVGeaLmk~ 381 (398)
|-...-.+..+.++|++-|..|..+++.
T Consensus 219 ~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 219 TSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred CCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 2112224788888999999999888754
No 463
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=90.81 E-value=1.6 Score=41.84 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEe---ccCCcCCCCHHHHHHHHhcCCCCcEEe------ccccCCHH-------HHHHHHHc
Q 015899 197 FDPVEIARSYEKGGAACLSIL---TDEKYFKGSFENLEAVRSAGVKCPLLC------KEFIVDAW-------QIYYARTK 260 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVL---Td~~~F~Gs~edL~~Ir~a~v~lPVL~------KDFIid~~-------QI~eAr~~ 260 (398)
.|-.+-|...++|||+.|-+. .+-+ ..-|.-.|+.++.. +.+||.| .||+.... .+..++.+
T Consensus 16 vDs~eSA~nAe~GGAdRiElCSaL~eGG-lTPSvG~l~~~k~~-~~iP~ycMiRpR~GDFvYsd~Em~a~~~Dv~llk~~ 93 (255)
T KOG4013|consen 16 VDSLESAENAEAGGADRIELCSALQEGG-LTPSVGFLSILKYK-YPIPLYCMIRPRAGDFVYSDDEMAANMEDVELLKKA 93 (255)
T ss_pred hhhHHHHHhHhhcCccHhHHhhhhccCC-CCCcchhhhhhhcc-cccceEEEEecCCCCcccchHHHHHHHHHHHHHHHc
Confidence 466778888999999887543 2211 11367788888875 8899874 79987665 46688999
Q ss_pred CcCEEEEeccC----CChHHHHHHHHHHHHcCCcE--EEE-cCCHHHHHH-Hh-ccCCCcEEeeccccCcccccC-hhhH
Q 015899 261 GADAVLLIAAV----LPDLDIRYMTKICKLLGLTA--LVE-VHDEREMDR-VL-GIEGIELIGINNRNLETFEVD-NSNT 330 (398)
Q Consensus 261 GADaVLLiaai----L~~~~L~~Li~~a~~LGL~~--LVE-Vht~eEl~r-Al-~l~Ga~iIGINnRdL~tf~vD-l~~t 330 (398)
|||+....+-- ++.+..+.++..|+-+-.+. -.+ +||..-... ++ ++ |++-+=....+-+ ..| +...
T Consensus 94 GAdGfVFGaLt~dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE~~l~~l-GF~rvLtSG~~ps--AldGv~~i 170 (255)
T KOG4013|consen 94 GADGFVFGALTSDGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLEDALLDL-GFKRVLTSGQEPS--ALDGVYII 170 (255)
T ss_pred CCCceEEeecCCCCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHHHHHHHh-hHHHHhhcCCCcc--cccchHHH
Confidence 99999987632 34456888888777544432 112 234433222 33 55 5532211111111 011 2334
Q ss_pred HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCC
Q 015899 331 KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGV 369 (398)
Q Consensus 331 ~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~Ga 369 (398)
.+|+.. ....+.|...+||++..-..-+.-.||
T Consensus 171 ~~lie~------hkg~i~VmpG~Gi~~sNl~~ile~s~c 203 (255)
T KOG4013|consen 171 RELIEL------HKGKIDVMPGCGINSSNLANILEWSKC 203 (255)
T ss_pred HHHHHH------hcCCEEEecCCCcchHHHHHHHhhccc
Confidence 555554 124678889999977664444433344
No 464
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=90.79 E-value=0.92 Score=44.95 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred CCHHHHHHHhccCCCcEEeeccccCcc-cccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 296 HDEREMDRVLGIEGIELIGINNRNLET-FEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 296 ht~eEl~rAl~l~Ga~iIGINnRdL~t-f~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
.|+.|+.+...-.|++.+=+- ||.- ...+.+...+++. .++.+=..|||++ ++++++.++||+-|+|
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvV--DLdgg~~~n~~~i~~i~~---------~~~~vqvGGGIR~-e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVI--MLGADDASLAAALEALRA---------YPGGLQVGGGVNS-ENAMSYLDAGASHVIV 110 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEE--ECCCCCcccHHHHHHHHh---------CCCCEEEeCCccH-HHHHHHHHcCCCEEEE
Confidence 456555554443477655442 3321 1223333444433 2367788999996 9999999999999999
Q ss_pred cccccCC----CChHHHHHhhhc
Q 015899 375 GESIVKQ----DDPGKGITGLFG 393 (398)
Q Consensus 375 GeaLmk~----~dp~~~i~~L~~ 393 (398)
|++.++. ++..+.+.+.+|
T Consensus 111 gT~Av~~~~~~p~~v~~~~~~~G 133 (262)
T PLN02446 111 TSYVFRDGQIDLERLKDLVRLVG 133 (262)
T ss_pred chHHHhCCCCCHHHHHHHHHHhC
Confidence 9999997 655555555553
No 465
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.78 E-value=1.6 Score=43.20 Aligned_cols=86 Identities=19% Similarity=0.386 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEec
Q 015899 274 DLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353 (398)
Q Consensus 274 ~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAES 353 (398)
.+.++.|.++++++||.++.|+++...++.+.++ ++++-|..|+.+.+ ....++.+ .+.+|+..-
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~--vd~~kIga~~~~n~----~LL~~~a~---------~gkPV~lk~ 141 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY--ADMLQIGSRNMQNF----ELLKEVGK---------TKKPILLKR 141 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh--CCEEEECcccccCH----HHHHHHhc---------CCCcEEEeC
Confidence 5679999999999999999999999999999885 78999998888652 22333322 467899999
Q ss_pred CCC-CHHHHHH----HHHcCCCEEEE
Q 015899 354 GLF-TPDDIAY----VQEAGVKAVLV 374 (398)
Q Consensus 354 GI~-t~eD~~~----l~~~GadaVLV 374 (398)
|.. +++++.. +...|-.-+.+
T Consensus 142 G~~~s~~e~~~A~e~i~~~Gn~~i~L 167 (266)
T PRK13398 142 GMSATLEEWLYAAEYIMSEGNENVVL 167 (266)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 988 8887754 45567754444
No 466
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=90.72 E-value=1.5 Score=41.89 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=65.3
Q ss_pred eEEEEeccCCC-CCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCc----CCCCHHHHHHHHhcCCCCcEEeccccCCHH
Q 015899 178 ALIAEVKKASP-SRGILREDFDPVEIARSYEKGGAACLSILTDEKY----FKGSFENLEAVRSAGVKCPLLCKEFIVDAW 252 (398)
Q Consensus 178 ~vIAEvKraSP-SkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~----F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~ 252 (398)
.+=..+|..-+ ..|+.. ++.++...|...|+ .+-+ ||-.. .+=+++.++.+++. +++||+.-..|-++.
T Consensus 124 vvslD~~~g~v~~~g~~~---~~~~~~~~~~~~g~-~ii~-tdI~~dGt~~G~d~eli~~i~~~-~~~pvia~GGi~s~e 197 (221)
T TIGR00734 124 VVSLDFKEKFLDASGLFE---SLEEVRDFLNSFDY-GLIV-LDIHSVGTMKGPNLELLTKTLEL-SEHPVMLGGGISGVE 197 (221)
T ss_pred EEEEEeECCccccccccc---cHHHHHHHHHhcCC-EEEE-EECCccccCCCCCHHHHHHHHhh-CCCCEEEeCCCCCHH
Confidence 34455553322 235442 78888888888887 5544 44332 22368888999886 899999999999999
Q ss_pred HHHHHHHcCcCEEEEeccCCC
Q 015899 253 QIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 253 QI~eAr~~GADaVLLiaaiL~ 273 (398)
++.++...|||+|++..++..
T Consensus 198 d~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 198 DLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHCCCCEEEEhHHhhC
Confidence 999999999999999776654
No 467
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.71 E-value=1.6 Score=44.93 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEE
Q 015899 272 LPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351 (398)
Q Consensus 272 L~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVA 351 (398)
+..+.|+.|.+.++++||.++.|+++.++++.+.+. ++++=|..|+..+| ....++.+ .+.+|+-
T Consensus 149 ~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~--~d~lqIga~~~~n~----~LL~~va~---------t~kPVll 213 (352)
T PRK13396 149 HGESALELLAAAREATGLGIITEVMDAADLEKIAEV--ADVIQVGARNMQNF----SLLKKVGA---------QDKPVLL 213 (352)
T ss_pred chHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh--CCeEEECcccccCH----HHHHHHHc---------cCCeEEE
Confidence 555669999999999999999999999999999885 79999999998764 22333322 4678999
Q ss_pred ecCCC-CHHHHHH----HHHcCCCEEEEccc
Q 015899 352 ESGLF-TPDDIAY----VQEAGVKAVLVGES 377 (398)
Q Consensus 352 ESGI~-t~eD~~~----l~~~GadaVLVGea 377 (398)
.-|.. |++++.. +.+.|-+-+++-+.
T Consensus 214 k~G~~~t~ee~~~A~e~i~~~Gn~~viL~er 244 (352)
T PRK13396 214 KRGMAATIDEWLMAAEYILAAGNPNVILCER 244 (352)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999 9998754 55568877776654
No 468
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.68 E-value=18 Score=37.39 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCCcE-EeccccC--CHHHHHHHHHcC-----------cCEEEEeccCCChHH----HHHHHHHHHHcCCcEEEE-----
Q 015899 238 VKCPL-LCKEFIV--DAWQIYYARTKG-----------ADAVLLIAAVLPDLD----IRYMTKICKLLGLTALVE----- 294 (398)
Q Consensus 238 v~lPV-L~KDFIi--d~~QI~eAr~~G-----------ADaVLLiaaiL~~~~----L~~Li~~a~~LGL~~LVE----- 294 (398)
.++|| |.=|-.. +.-.|..|..+| -+.|..+++-++-++ .++++++|+..|+.+=.|
T Consensus 84 ~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~ig 163 (340)
T cd00453 84 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTG 163 (340)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecC
Confidence 57897 4566555 667799999999 999999999997543 678889999887776222
Q ss_pred ----------------cCCHHHHHHHhccCC----CcEEeec----cccCc--ccccChhhHHHHhhhhccc-ccccCCc
Q 015899 295 ----------------VHDEREMDRVLGIEG----IELIGIN----NRNLE--TFEVDNSNTKKLLEGERGE-IIRQKNI 347 (398)
Q Consensus 295 ----------------Vht~eEl~rAl~l~G----a~iIGIN----nRdL~--tf~vDl~~t~~L~~~i~~~-~i~~~~v 347 (398)
-.+++|+.+..+-.| .+.+.+. .-.+. +-..|++...++.+.+... .+...++
T Consensus 164 G~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~ 243 (340)
T cd00453 164 GEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSL 243 (340)
T ss_pred CccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCC
Confidence 124777777765337 6765543 22333 2456777777766543100 0111134
Q ss_pred eEE--EecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 348 IVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 348 ~vV--AESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
++| ..||+ +.++++++.++|+.-|=|++.+..
T Consensus 244 pLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~Te~~~ 277 (340)
T cd00453 244 NFVFHGGSGS-TAQEIKDSVSYGVVKMNIDTDTQW 277 (340)
T ss_pred ceEEeCCCCC-CHHHHHHHHHcCCeEEEcccHHHH
Confidence 444 45566 567899999999999999988643
No 469
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.66 E-value=4.4 Score=38.59 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=89.0
Q ss_pred eEEEEeccCCCCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcEEeccccCCHHHHHH
Q 015899 178 ALIAEVKKASPSRGILREDFDPVEIARSYEKG-GAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256 (398)
Q Consensus 178 ~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~-GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~e 256 (398)
.|.+|+. | .+..+..+.|+.+.+. |-..|=| .+-...++-++.+++. .+++..- .+.+..|.+.
T Consensus 53 ~v~~qv~------~--~~~e~~i~~a~~l~~~~~~~~iKI----P~T~~gl~ai~~L~~~--gi~v~~T-~V~s~~Qa~~ 117 (211)
T cd00956 53 PVSAQVV------S--TDAEGMVAEARKLASLGGNVVVKI----PVTEDGLKAIKKLSEE--GIKTNVT-AIFSAAQALL 117 (211)
T ss_pred CEEEEEE------e--CCHHHHHHHHHHHHHhCCCEEEEE----cCcHhHHHHHHHHHHc--CCceeeE-EecCHHHHHH
Confidence 4788883 1 2334667778887776 4333322 2222556666666654 5665533 4689999999
Q ss_pred HHHcCcCEEEEeccCCC-----h-HHHHHHHHHHHHcCCc---EEEEcCCHHHHHHHhccCCCcEEeecc
Q 015899 257 ARTKGADAVLLIAAVLP-----D-LDIRYMTKICKLLGLT---ALVEVHDEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 257 Ar~~GADaVLLiaaiL~-----~-~~L~~Li~~a~~LGL~---~LVEVht~eEl~rAl~l~Ga~iIGINn 317 (398)
|..+||+.|--....++ + +.++++.+.++..|+. .+.-+.|..|+..+..+ |++++-+..
T Consensus 118 Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~-Gad~vTv~~ 186 (211)
T cd00956 118 AAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALA-GADAITLPP 186 (211)
T ss_pred HHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHc-CCCEEEeCH
Confidence 99999999877766542 2 3478889999999988 78889999999999997 999988874
No 470
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.48 E-value=10 Score=36.88 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred eccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHH---HhcCCCCcEEeccccCCHHHHHHHHH
Q 015899 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAV---RSAGVKCPLLCKEFIVDAWQIYYART 259 (398)
Q Consensus 183 vKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~I---r~a~v~lPVL~KDFIid~~QI~eAr~ 259 (398)
++...|..|.+..-.+| .++..+...|++.|-+=.|-.-+ +.+.+..+ .+. ..+.++.+==-.++..|..+..
T Consensus 7 l~~g~~~~g~~~~~~~p-~~~e~~~~~g~D~v~iDlEH~~~--~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~~i~~~Ld 82 (249)
T TIGR02311 7 LKEGQPQIGLWLGLADP-YAAEICAGAGFDWLLIDGEHAPN--DVRTILSQLQALAP-YPSSPVVRPAIGDPVLIKQLLD 82 (249)
T ss_pred HHCCCceEEEEEeCCCc-HHHHHHHhcCCCEEEEeccCCCC--CHHHHHHHHHHHHh-cCCCcEEECCCCCHHHHHHHhC
Q ss_pred cCcCEEEEeccCCChHHHHHHHHHHH-------------------------------HcCCcEEEEc-CCHHHHHHHhcc
Q 015899 260 KGADAVLLIAAVLPDLDIRYMTKICK-------------------------------LLGLTALVEV-HDEREMDRVLGI 307 (398)
Q Consensus 260 ~GADaVLLiaaiL~~~~L~~Li~~a~-------------------------------~LGL~~LVEV-ht~eEl~rAl~l 307 (398)
.|||+|++ ..+-+.++.+.+++.++ +..+-+++|. .-.+.++..+..
T Consensus 83 ~Ga~gIiv-P~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~ 161 (249)
T TIGR02311 83 IGAQTLLV-PMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAV 161 (249)
T ss_pred CCCCEEEe-cCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCC
Q ss_pred CCCcEEeeccccC--------cccccChhhH----HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 015899 308 EGIELIGINNRNL--------ETFEVDNSNT----KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375 (398)
Q Consensus 308 ~Ga~iIGINnRdL--------~tf~vDl~~t----~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVG 375 (398)
+|.+.|-+..-|| .....++... .+.+.. .+...-... .++++++++.+.|++-+++|
T Consensus 162 ~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~--------a~~~~Gi~~--~~~~~~~~~~~~G~~~~~~~ 231 (249)
T TIGR02311 162 EGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKA--------AGKAAGILT--ADPKLARQYLKLGALFVAVG 231 (249)
T ss_pred CCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHH--------cCCceeecC--CCHHHHHHHHHcCCCEEEEc
Q ss_pred c
Q 015899 376 E 376 (398)
Q Consensus 376 e 376 (398)
.
T Consensus 232 ~ 232 (249)
T TIGR02311 232 V 232 (249)
T ss_pred h
No 471
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.46 E-value=19 Score=35.36 Aligned_cols=166 Identities=12% Similarity=0.109 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCcEEEEe-ccCCcCCCCH-HHHHHH---Hhc-CCCCcEEeccccCCH-H---HHHHHHHcCcCEEEEec
Q 015899 200 VEIARSYEKGGAACLSIL-TDEKYFKGSF-ENLEAV---RSA-GVKCPLLCKEFIVDA-W---QIYYARTKGADAVLLIA 269 (398)
Q Consensus 200 ~~iA~aY~~~GA~aISVL-Td~~~F~Gs~-edL~~I---r~a-~v~lPVL~KDFIid~-~---QI~eAr~~GADaVLLia 269 (398)
.++...+.+.|+.+|-++ |--.++.=+. |..+.+ ++. .-.+||+..=.-.+. . +...|..+|||+|+++.
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 445666778899999986 2222222232 222222 222 235898853211112 2 45566789999999986
Q ss_pred cCC---ChHH-HHHHHHHHHHcCCcEEEE-----c---CCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhhhh
Q 015899 270 AVL---PDLD-IRYMTKICKLLGLTALVE-----V---HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGE 337 (398)
Q Consensus 270 aiL---~~~~-L~~Li~~a~~LGL~~LVE-----V---ht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i 337 (398)
-.. ++++ +.++-+.+...++.+++= . =+.+.+.+..+. ..++|+-.. ..|+....+++...
T Consensus 102 P~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--~~v~giK~s-----~~d~~~~~~l~~~~ 174 (285)
T TIGR00674 102 PYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE--PNIVAIKEA-----TGNLERISEIKAIA 174 (285)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC--CCEEEEEeC-----CCCHHHHHHHHHhc
Confidence 643 4555 555666677778887643 1 155666666654 469999632 34666666776541
Q ss_pred cccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 338 RGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 338 ~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
+.+..+++ |-. ..+.....+|++|.+.|.+-+-++
T Consensus 175 ------~~~~~v~~--G~d--~~~~~~~~~G~~G~i~~~~~~~P~ 209 (285)
T TIGR00674 175 ------PDDFVVLS--GDD--ALTLPMMALGGKGVISVTANVAPK 209 (285)
T ss_pred ------CCCeEEEE--Cch--HHHHHHHHcCCCEEEehHHHhhHH
Confidence 23433332 321 344556789999999887755433
No 472
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.42 E-value=0.92 Score=45.74 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCcEEEEecc---CCcC-----------CCC-HHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-
Q 015899 198 DPVEIARSYEKGGAACLSILTD---EKYF-----------KGS-FENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG- 261 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd---~~~F-----------~Gs-~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~G- 261 (398)
+..++++.+++.|++.|+|-.- +..+ .|- .+..+.+|+. +++||+.-.-|.++.+..++.+.|
T Consensus 237 ea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~~l~~g~ 315 (338)
T cd04733 237 DALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQALASGA 315 (338)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 4568899999999999997321 1111 111 3455688887 899999988889999999998876
Q ss_pred cCEEEEeccCCChHHH
Q 015899 262 ADAVLLIAAVLPDLDI 277 (398)
Q Consensus 262 ADaVLLiaaiL~~~~L 277 (398)
||.|.+.=.++.+.++
T Consensus 316 aD~V~lgR~~iadP~~ 331 (338)
T cd04733 316 VDGIGLARPLALEPDL 331 (338)
T ss_pred CCeeeeChHhhhCccH
Confidence 8999997777766543
No 473
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=90.35 E-value=2.8 Score=44.54 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHH-----HHcC----CcEEEEeccCCcCCCCHHHHH----HHHhcCCCCc
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSY-----EKGG----AACLSILTDEKYFKGSFENLE----AVRSAGVKCP 241 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY-----~~~G----A~aISVLTd~~~F~Gs~edL~----~Ir~a~v~lP 241 (398)
+++.|.+|| ++.. ++..+.+.++.| ...| |+.|-+-... |+++.+. .+++. +++|
T Consensus 90 np~~Ia~eI---~D~l----~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s----~dp~~v~~~Vk~V~~~-~dvP 157 (450)
T PRK04165 90 NPTGIAVDV---SDTM----DDEEIDARLKKINNFQFERVGEILKLDMVALRNAS----GDPEKFAKAVKKVAET-TDLP 157 (450)
T ss_pred CCCEEEEEE---eCCC----ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCC----CCHHHHHHHHHHHHHh-cCCC
Confidence 567999999 4432 234566677777 6666 9999995544 3555333 33443 6899
Q ss_pred EEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcCCHHHHHHH
Q 015899 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304 (398)
Q Consensus 242 VL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVht~eEl~rA 304 (398)
|.--- .++.-+.+|..+|||.+.|+.++- .+.++++.+.+...|..+.+.-.+.+.+...
T Consensus 158 LSIDT--~dpevleaAleagad~~plI~Sat-~dN~~~m~~la~~yg~pvVv~~~dl~~L~~l 217 (450)
T PRK04165 158 LILCS--EDPAVLKAALEVVADRKPLLYAAT-KENYEEMAELAKEYNCPLVVKAPNLEELKEL 217 (450)
T ss_pred EEEeC--CCHHHHHHHHHhcCCCCceEEecC-cchHHHHHHHHHHcCCcEEEEchhHHHHHHH
Confidence 75333 478888999999999988887754 3478999999999999888865444554443
No 474
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.33 E-value=1.1 Score=42.74 Aligned_cols=84 Identities=19% Similarity=0.182 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCCcCC------CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEecc
Q 015899 198 DPVEIARSYEKGG-AACLSILTDEKYFK------GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAA 270 (398)
Q Consensus 198 dp~~iA~aY~~~G-A~aISVLTd~~~F~------Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaa 270 (398)
++.+.++.+...| ++-|-+.+=..-|. ..++.++.+|+...++||.. |..|++..+.+.+.+|||.|.++.+
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a-~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV-DGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE-eCCCCHHHHHHHHHcCCCEEEEChH
Confidence 5678888887764 99985553222222 34566777776423577654 4447899999999999999999999
Q ss_pred CCChHHHHHHHH
Q 015899 271 VLPDLDIRYMTK 282 (398)
Q Consensus 271 iL~~~~L~~Li~ 282 (398)
+...++.++.++
T Consensus 205 i~~~~d~~~~~~ 216 (229)
T PLN02334 205 VFGAPDYAEVIS 216 (229)
T ss_pred HhCCCCHHHHHH
Confidence 875444443333
No 475
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=90.25 E-value=4 Score=39.87 Aligned_cols=67 Identities=18% Similarity=0.040 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHcCcCEEEEecc--CCChHHHHHHHHHHHHcCCcEEEEc--CCHHHHHHHhccCCCcEEee
Q 015899 248 IVDAWQIYYARTKGADAVLLIAA--VLPDLDIRYMTKICKLLGLTALVEV--HDEREMDRVLGIEGIELIGI 315 (398)
Q Consensus 248 Iid~~QI~eAr~~GADaVLLiaa--iL~~~~L~~Li~~a~~LGL~~LVEV--ht~eEl~rAl~l~Ga~iIGI 315 (398)
+-+|.-+.....+|-|.|+++.. .++.+++..++..++..|+.+||=| ++...+.+++++ |++=|-+
T Consensus 20 ~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~-Ga~gIiv 90 (249)
T TIGR03239 20 LGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDI-GFYNFLI 90 (249)
T ss_pred CCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcC-CCCEEEe
Confidence 34554455556789999999876 6788889999999999999999988 478889999997 9885533
No 476
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=90.13 E-value=4.8 Score=39.11 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCcE-----EeccccCCHHHHHHHHHcCcCEEEEeccC
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL-----LCKEFIVDAWQIYYARTKGADAVLLIAAV 271 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lPV-----L~KDFIid~~QI~eAr~~GADaVLLiaai 271 (398)
.+|..+.+.|.++||+.|++-.|... .-.+.|..||+.+ +++ |..+ .+..++. -..--+|.||+++--
T Consensus 78 ~~P~~~i~~~~~aGad~It~H~Ea~~--~~~~~l~~Ik~~g--~~~kaGlalnP~--Tp~~~i~-~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 78 RDQFEVAKACVAAGADIVTLQVEQTH--DLALTIEWLAKQK--TTVLIGLCLCPE--TPISLLE-PYLDQIDLIQILTLD 150 (228)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCcc--cHHHHHHHHHHCC--CCceEEEEECCC--CCHHHHH-HHHhhcCEEEEEEEC
Confidence 47999999999999999999877431 1246778888863 322 3344 3333444 334469999998653
Q ss_pred C--------Ch--HHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEEeecc
Q 015899 272 L--------PD--LDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGINN 317 (398)
Q Consensus 272 L--------~~--~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iIGINn 317 (398)
= +. +.++++.+...+.|+...+||. |.+.+.++.++ ||+++-...
T Consensus 151 PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-GaD~~V~GS 208 (228)
T PRK08091 151 PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQH-QIDWVVSGS 208 (228)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEECh
Confidence 2 11 2344444444456888888885 78888888886 998765543
No 477
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=90.05 E-value=1.4 Score=43.05 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=58.7
Q ss_pred cEEEEcCCHHHHHHHhccCC-CcEEeeccccCcccccChhhHHHHhhhhcc-cccccCCceEEEecCCCCHHHHHHHHHc
Q 015899 290 TALVEVHDEREMDRVLGIEG-IELIGINNRNLETFEVDNSNTKKLLEGERG-EIIRQKNIIVVGESGLFTPDDIAYVQEA 367 (398)
Q Consensus 290 ~~LVEVht~eEl~rAl~l~G-a~iIGINnRdL~tf~vDl~~t~~L~~~i~~-~~i~~~~v~vVAESGI~t~eD~~~l~~~ 367 (398)
.+=+|+.+.+++..+... + +++|-..|-+..+. +....+.+.... +...+..+.+++.|||. ++.+......
T Consensus 186 ~idve~~~~~~~~~~~~~-~~~d~irlDs~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~-~~~i~~~~~~ 259 (281)
T cd00516 186 LIDVEVDTLEEALEAAKA-GGADGIRLDSGSPEEL----DPAVLILKARAHLDGKGLPRVKIEASGGLD-EENIRAYAET 259 (281)
T ss_pred EEEEEeCCHHHHHHHHhc-CCCCEEEeCCCChHHH----HHHHHHHHHHHhhhhcCCCceEEEEeCCCC-HHHHHHHHHc
Confidence 345666789999999886 7 88887765543222 222222221000 00112467899999996 9999999999
Q ss_pred CCCEEEEcccccCC
Q 015899 368 GVKAVLVGESIVKQ 381 (398)
Q Consensus 368 GadaVLVGeaLmk~ 381 (398)
|+|.+-||+.++..
T Consensus 260 gvd~~gvG~~~~~~ 273 (281)
T cd00516 260 GVDVFGVGTLLHSA 273 (281)
T ss_pred CCCEEEeCcccccC
Confidence 99999999999886
No 478
>PRK14057 epimerase; Provisional
Probab=90.05 E-value=7.9 Score=38.30 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCC--------Cc--EEeccccCCHHHHHHHHHcCcCEEE
Q 015899 197 FDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--------CP--LLCKEFIVDAWQIYYARTKGADAVL 266 (398)
Q Consensus 197 ~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~--------lP--VL~KDFIid~~QI~eAr~~GADaVL 266 (398)
.+|..+.+.|.++||+.|++-.|..- --...|..||+.+.. .+ .|+.+ . |....+-..-=.|.||
T Consensus 85 ~~P~~~i~~~~~aGad~It~H~Ea~~--~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~--T-p~e~i~~~l~~vD~VL 159 (254)
T PRK14057 85 ADQWTAAQACVKAGAHCITLQAEGDI--HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPA--T-PLDVIIPILSDVEVIQ 159 (254)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccc--CHHHHHHHHHHcCCCcccccccceeEEEECCC--C-CHHHHHHHHHhCCEEE
Confidence 37999999999999999999888431 124677888876321 12 23344 3 3344444444699999
Q ss_pred EeccCC-------Ch---HHHHHHHHHHHHcCCcEEEEcC---CHHHHHHHhccCCCcEEeec
Q 015899 267 LIAAVL-------PD---LDIRYMTKICKLLGLTALVEVH---DEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 267 LiaaiL-------~~---~~L~~Li~~a~~LGL~~LVEVh---t~eEl~rAl~l~Ga~iIGIN 316 (398)
+++--= -+ +.++++.++..+.|+..++||. |.+-+..+.++ ||+++-..
T Consensus 160 vMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~a-Gad~~V~G 221 (254)
T PRK14057 160 LLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQ-GIDRVVSG 221 (254)
T ss_pred EEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHC-CCCEEEEC
Confidence 976532 11 2244444444567888888886 78888888886 99977554
No 479
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.02 E-value=2.1 Score=39.88 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCC-CCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCCh
Q 015899 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGV-KCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPD 274 (398)
Q Consensus 196 ~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v-~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~ 274 (398)
-.++.++.+++. .||+.|-+- |.---++++.|+.++.. . ++|++.=+. |++..+.+..++||++|.++..+.+.
T Consensus 112 ~~t~~e~~~A~~-~Gadyv~~F--pt~~~~G~~~l~~~~~~-~~~ipvvaiGG-I~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 112 ALTPTEIVTAWQ-AGASCVKVF--PVQAVGGADYIKSLQGP-LGHIPLIPTGG-VTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred cCCHHHHHHHHH-CCCCEEEEC--cCCcccCHHHHHHHHhh-CCCCcEEEeCC-CCHHHHHHHHHCCCeEEEEehhcccC
Confidence 468888877775 699999872 11113578999999986 6 699987765 68889999999999999999888764
No 480
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.99 E-value=5.3 Score=39.12 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred HHHHcCcCEEEEeccC-------CCh-HH---HHHHHHHHHHc-CCcEEEEcCCHHHHHHHhccCCCcEEeeccccC
Q 015899 256 YARTKGADAVLLIAAV-------LPD-LD---IRYMTKICKLL-GLTALVEVHDEREMDRVLGIEGIELIGINNRNL 320 (398)
Q Consensus 256 eAr~~GADaVLLiaai-------L~~-~~---L~~Li~~a~~L-GL~~LVEVht~eEl~rAl~l~Ga~iIGINnRdL 320 (398)
+-...|||.|=+++.- ++. ++ +..+++.++.. ++.+-++.++.+.++.|++. |+++ ||.-+.
T Consensus 31 ~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~-G~~i--INsis~ 104 (257)
T TIGR01496 31 RMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA-GADI--INDVSG 104 (257)
T ss_pred HHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc-CCCE--EEECCC
Confidence 3356799999997431 232 23 66777777765 99999999999999999997 9998 554444
No 481
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.97 E-value=0.83 Score=45.97 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHcCCcEEEEec----cCC--cC-CC-CHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcC-cCEEEEe
Q 015899 198 DPVEIARSYEKGGAACLSILT----DEK--YF-KG-SFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKG-ADAVLLI 268 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLT----d~~--~F-~G-s~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~G-ADaVLLi 268 (398)
+..++++.+++.|.+.|+|-. ... .+ .+ ..+.++.+|+. +++||+.-+.|.++.+..++...| ||.|-+.
T Consensus 242 e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 242 DSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLVALG 320 (336)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHcCCCCeehhh
Confidence 456888999999999999742 111 11 12 24667788887 899999999999999999999988 9999998
Q ss_pred ccCCChHHH
Q 015899 269 AAVLPDLDI 277 (398)
Q Consensus 269 aaiL~~~~L 277 (398)
-..+.+.++
T Consensus 321 R~~i~dP~~ 329 (336)
T cd02932 321 RELLRNPYW 329 (336)
T ss_pred HHHHhCccH
Confidence 777766553
No 482
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.96 E-value=21 Score=35.13 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=94.9
Q ss_pred HHHHHHHHHc-CCcEEEEe--ccCCcCCCCHHH---HHHHHhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEEe
Q 015899 200 VEIARSYEKG-GAACLSIL--TDEKYFKGSFEN---LEAVRSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLLI 268 (398)
Q Consensus 200 ~~iA~aY~~~-GA~aISVL--Td~~~F~Gs~ed---L~~Ir~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLLi 268 (398)
.++++.+.+. |+.+|-++ |-+.+.--.-|. ++.+++. .-.+||+..=.-.+.. ....|..+|||+|++.
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4456677788 99999886 222222121122 2222332 1258988533212222 2346678999999997
Q ss_pred ccCC---ChHH-HHHHHHHHHHc-CCcEEEE-----cC---CHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHhh
Q 015899 269 AAVL---PDLD-IRYMTKICKLL-GLTALVE-----VH---DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335 (398)
Q Consensus 269 aaiL---~~~~-L~~Li~~a~~L-GL~~LVE-----Vh---t~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~ 335 (398)
.-.. ++++ .+++-..|... ++.+++= .. +.+.+.+..+ ...++||-.. ..|+....+++.
T Consensus 104 ~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s-----~~d~~~~~~~~~ 176 (288)
T cd00954 104 TPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFT-----ATDLYDLERIRA 176 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeC-----CCCHHHHHHHHH
Confidence 7643 4444 55566667778 8888763 11 5556666555 3579999743 235666666665
Q ss_pred hhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccCCC
Q 015899 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382 (398)
Q Consensus 336 ~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk~~ 382 (398)
.. +.+..++ +|.. +.+.....+|++|++-|.+-+-++
T Consensus 177 ~~------~~~~~v~--~G~d--~~~~~~~~~G~~G~i~~~~n~~P~ 213 (288)
T cd00954 177 AS------PEDKLVL--NGFD--EMLLSALALGADGAIGSTYNVNGK 213 (288)
T ss_pred hC------CCCcEEE--Eech--HHHHHHHHcCCCEEEeChhhhCHH
Confidence 41 2243333 2331 234556779999998886644333
No 483
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.93 E-value=14 Score=36.15 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhc--CCCC-cEEeccccCCHHHHHHHHHcCcCEEEEeccCCChHHH
Q 015899 201 EIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA--GVKC-PLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDI 277 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a--~v~l-PVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L 277 (398)
.+++.+...|-+.+=| |-++-.-+++.+..+..+ ...+ |++|=-. -++..|..+..+||++|++ --+-+.++.
T Consensus 24 ~~~e~~a~~G~D~v~i--D~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~-~~~~~i~r~LD~Ga~gIiv-P~v~taeea 99 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLL--DGEHAPNDVLTFIPQLMALKGSASAPVVRPPW-NEPVIIKRLLDIGFYNFLI-PFVESAEEA 99 (249)
T ss_pred HHHHHHHhcCCCEEEE--ecccCCCCHHHHHHHHHHHhhcCCCcEEECCC-CCHHHHHHHhcCCCCEEEe-cCcCCHHHH
Confidence 5788888899998777 444444577777766322 1333 4555333 5889999999999999965 455567778
Q ss_pred HHHHHHHHH------------------------------cCCcEEEEcC-CHHHHHHHhccCCCcEEeeccccCcc----
Q 015899 278 RYMTKICKL------------------------------LGLTALVEVH-DEREMDRVLGIEGIELIGINNRNLET---- 322 (398)
Q Consensus 278 ~~Li~~a~~------------------------------LGL~~LVEVh-t~eEl~rAl~l~Ga~iIGINnRdL~t---- 322 (398)
+.+++.|+- ..+-+++|.- -.+.++..+..+|.+.+-+..-||..
T Consensus 100 ~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~ 179 (249)
T TIGR03239 100 ERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGH 179 (249)
T ss_pred HHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCC
Confidence 888765542 1123355542 23334444454567777666555532
Q ss_pred -cccC---hhhH-HHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcc
Q 015899 323 -FEVD---NSNT-KKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGE 376 (398)
Q Consensus 323 -f~vD---l~~t-~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGe 376 (398)
...+ +... .+++...+. .++.+- --..++++++++.+.|++-+.+|.
T Consensus 180 ~~~~~~~~v~~a~~~v~~aa~a-----~G~~~g--~~~~~~~~~~~~~~~G~~~~~~~~ 231 (249)
T TIGR03239 180 LGNPNHPDVQKAIRHIFDRAAA-----HGKPCG--ILAPVEADARRYLEWGATFVAVGS 231 (249)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-----cCCCEE--EcCCCHHHHHHHHHcCCCEEEEhH
Confidence 1112 1111 122222221 233321 123688999999999999999985
No 484
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=89.86 E-value=3.4 Score=42.75 Aligned_cols=190 Identities=23% Similarity=0.218 Sum_probs=113.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCH---HHHHHHHhc--CCCCcEEeccccCCH----------HHHH-HH
Q 015899 194 REDFDPVEIARSYEKGGAACLSILTDEKYFKGSF---ENLEAVRSA--GVKCPLLCKEFIVDA----------WQIY-YA 257 (398)
Q Consensus 194 ~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~---edL~~Ir~a--~v~lPVL~KDFIid~----------~QI~-eA 257 (398)
|.--.|+++|+.|-+-||+-++-|.=..|-.+-+ -.|+.+|++ .|-+|+-....|.|- .++. +.
T Consensus 266 RNLGKPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~Y 345 (541)
T KOG0623|consen 266 RNLGKPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEY 345 (541)
T ss_pred hccCChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHH
Confidence 3345799999999999999999997777766544 445555554 256777654443221 2333 33
Q ss_pred HHcCcCEEEEeccCCChHHHHHHHH-------------HHHHcCCcE---------------------------------
Q 015899 258 RTKGADAVLLIAAVLPDLDIRYMTK-------------ICKLLGLTA--------------------------------- 291 (398)
Q Consensus 258 r~~GADaVLLiaaiL~~~~L~~Li~-------------~a~~LGL~~--------------------------------- 291 (398)
...|||-|-+........ +++++ +.+..|-++
T Consensus 346 FRSGADKvSIGsDAVyAA--Ekyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE 423 (541)
T KOG0623|consen 346 FRSGADKVSIGSDAVYAA--EKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGE 423 (541)
T ss_pred HhcCCceeeechhHHHHH--HHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCc
Confidence 577999998876543211 11111 122233333
Q ss_pred ---EEEcC----------CHHHHHHHhccCCCcEEeec--cccCcccccChhhHHHHhhhhcccccccCCceEEEecCCC
Q 015899 292 ---LVEVH----------DEREMDRVLGIEGIELIGIN--NRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356 (398)
Q Consensus 292 ---LVEVh----------t~eEl~rAl~l~Ga~iIGIN--nRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~ 356 (398)
|-.|. ..-|+.+|-+.-||--|-.| ..|-..-..|++. .+|++. .-+++|||.||-.
T Consensus 424 ~YcWYQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGsn~GyDieL-v~lvkd-------sV~IPVIASSGAG 495 (541)
T KOG0623|consen 424 EYCWYQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGSNKGYDIEL-VKLVKD-------SVGIPVIASSGAG 495 (541)
T ss_pred eeEEEEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCCCCCcchhH-HHHhhc-------ccCCceEecCCCC
Confidence 21111 12245554443344333333 2222233344444 233332 1378999999999
Q ss_pred CHHHHHHHH-HcCCCEEEEcccccCCCChHHHHHhhhc
Q 015899 357 TPDDIAYVQ-EAGVKAVLVGESIVKQDDPGKGITGLFG 393 (398)
Q Consensus 357 t~eD~~~l~-~~GadaVLVGeaLmk~~dp~~~i~~L~~ 393 (398)
+|+....+. +..|||.|-.--+-+..-|.+-+++-+.
T Consensus 496 ~P~HFeEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~ 533 (541)
T KOG0623|consen 496 TPDHFEEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQ 533 (541)
T ss_pred CcHHHHHHHHhcCchhhhhccceecCccchHHHHHHHH
Confidence 999998765 5689999988888888888888887654
No 485
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=89.85 E-value=2.1 Score=46.57 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHHcCc--CEEEEeccCCChHHHHHHHHHHHHcCCcEEEE-cCCHHHHHHHhccCC----Cc-EEeec-cc-----c
Q 015899 254 IYYARTKGA--DAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-VHDEREMDRVLGIEG----IE-LIGIN-NR-----N 319 (398)
Q Consensus 254 I~eAr~~GA--DaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVE-Vht~eEl~rAl~l~G----a~-iIGIN-nR-----d 319 (398)
|.+||+.|+ |.|.+-+-+.+-++--+|++....-|+.-++= =.+.+.+..++.+.. .. ++-+. .| .
T Consensus 114 v~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHS 193 (717)
T COG4981 114 VQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHS 193 (717)
T ss_pred HHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccc
Confidence 568898887 67877777776655566665544448876543 247777777665521 12 33333 11 2
Q ss_pred Cccccc-ChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHH------Hc-----CCCEEEEcccccCCCC
Q 015899 320 LETFEV-DNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQ------EA-----GVKAVLVGESIVKQDD 383 (398)
Q Consensus 320 L~tf~v-Dl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~------~~-----GadaVLVGeaLmk~~d 383 (398)
..++.- =+.+..+|... ++++++..|||.||+|..... .+ -+||+|||++.|-.+.
T Consensus 194 weDld~llL~tYs~lR~~--------~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 194 WEDLDDLLLATYSELRSR--------DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred hhhcccHHHHHHHHHhcC--------CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 222211 14455555442 689999999999999987654 23 3699999999996543
No 486
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=89.71 E-value=14 Score=34.42 Aligned_cols=132 Identities=16% Similarity=0.098 Sum_probs=81.4
Q ss_pred cHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHhcCCCCc
Q 015899 162 DFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241 (398)
Q Consensus 162 ~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs~edL~~Ir~a~v~lP 241 (398)
.|.+.|.... ..+..+..|+|...+ ....-...+++.+.+.|...--+ +...+.+.++.+|+...++|
T Consensus 84 tL~evl~~~~--~~~~~l~iEiK~~~~-----~~~~~~~~v~~~l~~~~~~~~v~-----v~Sf~~~~l~~~~~~~p~~~ 151 (220)
T cd08579 84 SLDEYLALAK--GLKQKLLIELKPHGH-----DSPDLVEKFVKLYKQNLIENQHQ-----VHSLDYRVIEKVKKLDPKIK 151 (220)
T ss_pred CHHHHHHHhh--ccCCeEEEEECCCCC-----CCHHHHHHHHHHHHHcCCCcCeE-----EEeCCHHHHHHHHHHCCCCe
Confidence 4555554332 124689999996532 11112345677777777532112 12247888898887434555
Q ss_pred E--EeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEE-EcCCHHHHHHHhccCCCcEEeec
Q 015899 242 L--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV-EVHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 242 V--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LV-EVht~eEl~rAl~l~Ga~iIGIN 316 (398)
+ +.... +......+++.+.+....++ .++++.++..|+.+.+ -|++.+++.+++++ |++.|-++
T Consensus 152 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~G~~v~~wtvn~~~~~~~~~~~-Gvd~i~TD 218 (220)
T cd08579 152 TGYILPFN------IGNLPKTNVDFYSIEYSTLN----KEFIRQAHQNGKKVYVWTVNDPDDMQRYLAM-GVDGIITD 218 (220)
T ss_pred EEEEEecc------cCcccccCceEEeeehhhcC----HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHc-CCCEEeCC
Confidence 4 22221 11134568888877655554 4678888999998754 46789999999997 99988665
No 487
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.71 E-value=1.3 Score=41.08 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHcCCcEEEEecc-CCcCCC-----CHHHHHHHHhcCCC---C-cEEeccccCCHHHHHHHHHcCcCEEEE
Q 015899 198 DPVEIARSYEKGGAACLSILTD-EKYFKG-----SFENLEAVRSAGVK---C-PLLCKEFIVDAWQIYYARTKGADAVLL 267 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVLTd-~~~F~G-----s~edL~~Ir~a~v~---l-PVL~KDFIid~~QI~eAr~~GADaVLL 267 (398)
++.+.++.|.. +++.|-+.+- ++.-+. .++.++.+++. .+ + |+++=++.|++..+.++..+|||.|.+
T Consensus 120 t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~-~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 120 TPLEPLEDVLD-LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKL-IDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CCHHHHHHHHh-hCCEEEEEEECCCCCcccccHHHHHHHHHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 34566777754 3676666542 322222 23566666553 33 2 456667778989999999999999999
Q ss_pred eccCCChHHHHHHHHHHH
Q 015899 268 IAAVLPDLDIRYMTKICK 285 (398)
Q Consensus 268 iaaiL~~~~L~~Li~~a~ 285 (398)
+.++...++..+.++..+
T Consensus 198 gSai~~~~d~~~~~~~~~ 215 (220)
T PRK05581 198 GSAVFGAPDYKEAIDSLR 215 (220)
T ss_pred ChhhhCCCCHHHHHHHHH
Confidence 999986555555544443
No 488
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.69 E-value=3.3 Score=40.04 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEEeccCCcCC-------CCHHHHHHHHhcCCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCCC
Q 015899 201 EIARSYEKGGAACLSILTDEKYFK-------GSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~~F~-------Gs~edL~~Ir~a~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL~ 273 (398)
+=+....+.|++-|.- |..+|-+ -+++.++.+++ .++||+.-+-+-+|.|...++.+||++|.++.++-.
T Consensus 138 ee~l~a~~~G~D~IGT-TLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR 214 (229)
T COG3010 138 EEGLNAHKLGFDIIGT-TLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR 214 (229)
T ss_pred HHHHHHHHcCCcEEec-ccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence 4456667789998875 6666665 26777888876 489999999999999999999999999999999887
Q ss_pred hHH-HHHHHHH
Q 015899 274 DLD-IRYMTKI 283 (398)
Q Consensus 274 ~~~-L~~Li~~ 283 (398)
++. .+.|.+.
T Consensus 215 p~~It~~F~~~ 225 (229)
T COG3010 215 PEEITQWFVDA 225 (229)
T ss_pred HHHHHHHHHHH
Confidence 766 3444443
No 489
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=89.69 E-value=0.86 Score=47.40 Aligned_cols=72 Identities=25% Similarity=0.199 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEEeccCC-cC---CCCHHHHHHHHhc-CCCCcEEeccccCCHHHHHHHHHcCcCEEEEeccCC
Q 015899 201 EIARSYEKGGAACLSILTDEK-YF---KGSFENLEAVRSA-GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVL 272 (398)
Q Consensus 201 ~iA~aY~~~GA~aISVLTd~~-~F---~Gs~edL~~Ir~a-~v~lPVL~KDFIid~~QI~eAr~~GADaVLLiaaiL 272 (398)
+-|+...+.||++|-|---.+ .+ ..+.+-|..|+++ ..++||+.-..|.+..+|..|.++|||+|.+.-.+|
T Consensus 257 ~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l 333 (381)
T PRK11197 257 EDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFV 333 (381)
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHH
Confidence 466677778999998732111 11 1245667777765 126999999999999999999999999999987765
No 490
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=89.62 E-value=7.2 Score=37.75 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=74.2
Q ss_pred CceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeccCCcCCCCH-HHHHHHHhcCCC---CcE--Eecccc
Q 015899 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGA-ACLSILTDEKYFKGSF-ENLEAVRSAGVK---CPL--LCKEFI 248 (398)
Q Consensus 176 ~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~GA-~aISVLTd~~~F~Gs~-edL~~Ir~a~v~---lPV--L~KDFI 248 (398)
++.+..|+| +|..+ -...+.....+.|. ..+-+. .| +. +.|..+|+..-. +|+ |..+..
T Consensus 120 ~~~l~iEiK--~~~~~------~~~~v~~~l~~~~~~~~v~i~----SF--~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 185 (265)
T cd08564 120 KLKYNIELK--GREVG------LGERVLNLVEKYGMILQVHFS----SF--LHYDRLDLLKALRPNKLNVPIALLFNEVK 185 (265)
T ss_pred CcEEEEEeC--CCchh------HHHHHHHHHHHcCCCCCEEEE----ec--CchhHHHHHHHhCcCCCCceEEEEecCCC
Confidence 468999999 44321 22356666777664 222221 12 22 456666654122 554 333321
Q ss_pred C-CHH-HHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEE-----cCCHHHHHHHhccCCCcEEeec
Q 015899 249 V-DAW-QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVE-----VHDEREMDRVLGIEGIELIGIN 316 (398)
Q Consensus 249 i-d~~-QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVE-----Vht~eEl~rAl~l~Ga~iIGIN 316 (398)
- ... -+..++..|++.+-+....++ .++++.++..|+.+++= +.+.+++.+.+++ |++.|-++
T Consensus 186 ~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~-GvdgiiTD 255 (265)
T cd08564 186 SPSPLDFLEQAKYYNATWVNFSYDFWT----EEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLEL-GVDCICPN 255 (265)
T ss_pred CcccccHHHHHHhcCCceeeechhhhh----HHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHc-CCCEEEcC
Confidence 0 111 245567789999887555443 57888999999998655 4679999999998 98866554
No 491
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.62 E-value=0.94 Score=43.73 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=56.5
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC-------HHHHHHHHhcCCCCcEEeccccCCHHHHHHH
Q 015899 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGS-------FENLEAVRSAGVKCPLLCKEFIVDAWQIYYA 257 (398)
Q Consensus 185 raSPSkG~i~~~~dp~~iA~aY~~~GA~aISVLTd~~~F~Gs-------~edL~~Ir~a~v~lPVL~KDFIid~~QI~eA 257 (398)
+....-+.+-.+..+.+..+.+.+.....|=++|-...|+|. .+.++.+|+. .++||+....|-++.++.++
T Consensus 127 ~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~ 205 (242)
T cd04724 127 EYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEV 205 (242)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHH
Confidence 333333443333344455555555344555555545555543 2667888886 89999996666778899999
Q ss_pred HHcCcCEEEEeccCC
Q 015899 258 RTKGADAVLLIAAVL 272 (398)
Q Consensus 258 r~~GADaVLLiaaiL 272 (398)
+.+ ||++++..++.
T Consensus 206 ~~~-ADgvVvGSaiv 219 (242)
T cd04724 206 AKY-ADGVIVGSALV 219 (242)
T ss_pred Hcc-CCEEEECHHHH
Confidence 999 99999987765
No 492
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.58 E-value=1.8 Score=39.37 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=66.2
Q ss_pred CcCEEEEeccCC-ChHH--HHHHHHHHHHcCCcEEEEc--CCHHHHHHHh-ccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 261 GADAVLLIAAVL-PDLD--IRYMTKICKLLGLTALVEV--HDEREMDRVL-GIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 261 GADaVLLiaaiL-~~~~--L~~Li~~a~~LGL~~LVEV--ht~eEl~rAl-~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
|+.-=+|++.+- +.-+ .+-+.+..++.|++++.-- .+.+|+-++. + +.++.||+...+-.- .....++.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-~dv~vIgvSsl~g~h----~~l~~~lv 84 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-EDVDVIGVSSLDGGH----LTLVPGLV 84 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-cCCCEEEEEeccchH----HHHHHHHH
Confidence 555444555543 3212 3444455567899986543 4777776665 5 589999998655422 23344444
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEE
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVL 373 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVL 373 (398)
+.++.... .+ +.|..||+-.++|..+++++|+++++
T Consensus 85 e~lre~G~--~~-i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 85 EALREAGV--ED-ILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred HHHHHhCC--cc-eEEeecCccCchhHHHHHHhCcceee
Confidence 44433222 33 44678999999999999999999875
No 493
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=89.58 E-value=18 Score=35.05 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHcCCcEEEEeccCCcCCCCH--------------------HHHHHHHhcCCCCcEEeccccC---CHHHHHHHH-
Q 015899 203 ARSYEKGGAACLSILTDEKYFKGSF--------------------ENLEAVRSAGVKCPLLCKEFIV---DAWQIYYAR- 258 (398)
Q Consensus 203 A~aY~~~GA~aISVLTd~~~F~Gs~--------------------edL~~Ir~a~v~lPVL~KDFIi---d~~QI~eAr- 258 (398)
|+..++.|..+|-+ ||. ...+.|... +++| +--|+=. ++.++.+..
T Consensus 22 A~~~e~~G~~ai~~--------s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~-~~~P-v~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 22 ARLAERAGFKAIYT--------SGAGVAASLGLPDGGLLTLDEVLAAVRRIARA-VDLP-VIADADTGYGNALNVARTVR 91 (243)
T ss_pred HHHHHHcCCCEEEe--------ccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhh-ccCC-EEEEcCCCCCCHHHHHHHHH
Q ss_pred ---HcCcCEEEE-------------eccCCChHHHHHHHHHHHH--cC-CcEEEEcC-------------CHHHHHHHhc
Q 015899 259 ---TKGADAVLL-------------IAAVLPDLDIRYMTKICKL--LG-LTALVEVH-------------DEREMDRVLG 306 (398)
Q Consensus 259 ---~~GADaVLL-------------iaaiL~~~~L~~Li~~a~~--LG-L~~LVEVh-------------t~eEl~rAl~ 306 (398)
.+||++|.+ ....++.++..+-++.++. -+ -+++|=.. ..+-++.+.+
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Q ss_pred cCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEEcccccC
Q 015899 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380 (398)
Q Consensus 307 l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLVGeaLmk 380 (398)
+ ||+.|-+-... |.+...++.+. .+..+.+..-.|-. .-.+..+.++|++-|++|..+++
T Consensus 172 A-GAD~v~v~~~~------~~~~~~~~~~~------~~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 172 A-GADGIFVEGLK------DPEEIRAFAEA------PDVPLNVNMTPGGN-LLTVAELAELGVRRVSYGLALLR 231 (243)
T ss_pred c-CCCEEEeCCCC------CHHHHHHHHhc------CCCCEEEEecCCCC-CCCHHHHHHCCCeEEEEChHHHH
No 494
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.53 E-value=3.2 Score=39.52 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=69.9
Q ss_pred CcEEeccccCCHHHHHHH-HHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEc---CCHHHHHHHhccCCCcEEee
Q 015899 240 CPLLCKEFIVDAWQIYYA-RTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV---HDEREMDRVLGIEGIELIGI 315 (398)
Q Consensus 240 lPVL~KDFIid~~QI~eA-r~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEV---ht~eEl~rAl~l~Ga~iIGI 315 (398)
+||+|.+=.-+-..+.++ .+.|...|=+- .-++.-++.+-+..++++ +++|-+ -|.++++.+.++ |+++|-.
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit--~~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~a-GA~FivS 82 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEIT--LRTPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKA-GSRFIVS 82 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEe--CCCccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHc-CCCEEEC
Confidence 678886622222344455 56677765542 334444554444444554 566654 488999999997 9998765
Q ss_pred ccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 015899 316 NNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLV 374 (398)
Q Consensus 316 NnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~GadaVLV 374 (398)
-+-| .++++..+ ..+ +..--|+.||.++..+.++|++.|=+
T Consensus 83 P~~~-----------~~vi~~a~-----~~~--i~~iPG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 83 PGTT-----------QELLAAAN-----DSD--VPLLPGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred CCCC-----------HHHHHHHH-----HcC--CCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 5322 22333211 123 34567999999999999999998744
No 495
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.52 E-value=2.3 Score=42.54 Aligned_cols=132 Identities=20% Similarity=0.286 Sum_probs=85.4
Q ss_pred CCccHHHHHHhhhhcCCCceEEEEeccCCCCCCCCCCCCCHHHHHHHH-HHcCCcEEE-------EeccCCc--CCCCH-
Q 015899 159 PARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIARSY-EKGGAACLS-------ILTDEKY--FKGSF- 227 (398)
Q Consensus 159 ~~~~f~~aL~~~~~~~~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY-~~~GA~aIS-------VLTd~~~--F~Gs~- 227 (398)
.++.|.++++.. -.-|+.=.|..|-- | .+.+.. .-||+. -| ||--+++ |-|++
T Consensus 118 ~T~~~V~~~~~~------~~~i~~TRKT~PG~---R------~l~k~AV~~GGG~-~HR~gL~d~vlikdNHi~~~G~i~ 181 (281)
T PRK06106 118 ATASIVAAIAGT------KAKVVCTRKTTPGL---R------ALEKYAVRAGGGM-NHRFGLDDAVLIKDNHIAIAGGVR 181 (281)
T ss_pred HHHHHHHHhcCC------CeEEEEeCCCCCch---h------HHHHHHHHhcCcc-cccCCchhhhccCHHHHHHhCcHH
Confidence 457788887642 25688888888852 2 233222 234433 22 2222222 23443
Q ss_pred HHHHHHHhcCCC--CcE--EeccccCCHHHHHHHHHcCcCEEEEeccCCChHHHHHHHHHHHHcCCcEEEEcC---CHHH
Q 015899 228 ENLEAVRSAGVK--CPL--LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH---DERE 300 (398)
Q Consensus 228 edL~~Ir~a~v~--lPV--L~KDFIid~~QI~eAr~~GADaVLLiaaiL~~~~L~~Li~~a~~LGL~~LVEVh---t~eE 300 (398)
+-++.+|+. .. .|| .+. +..|+.+|..+|||.|+|+- .+++++++.++..+. ..++|++ |++.
T Consensus 182 ~ai~~~r~~-~~~~~kIeVEv~----tleea~ea~~~gaDiI~LDn--~s~e~l~~av~~~~~---~~~leaSGGI~~~n 251 (281)
T PRK06106 182 EAIRRARAG-VGHLVKIEVEVD----TLDQLEEALELGVDAVLLDN--MTPDTLREAVAIVAG---RAITEASGRITPET 251 (281)
T ss_pred HHHHHHHHh-CCCCCcEEEEeC----CHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHhCC---CceEEEECCCCHHH
Confidence 667777764 32 333 344 45699999999999999976 788889988886543 3458887 8888
Q ss_pred HHHHhccCCCcEEeecc
Q 015899 301 MDRVLGIEGIELIGINN 317 (398)
Q Consensus 301 l~rAl~l~Ga~iIGINn 317 (398)
+...... |+|+|.+..
T Consensus 252 i~~yA~t-GVD~Is~Ga 267 (281)
T PRK06106 252 APAIAAS-GVDLISVGW 267 (281)
T ss_pred HHHHHhc-CCCEEEeCh
Confidence 8888886 999999974
No 496
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=89.33 E-value=1 Score=39.82 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=49.6
Q ss_pred HHcCCcEEEEc--CCHHHH-HHHhccCCCcEEeeccccCcccccChhhHHHHhhhhcccccccCCceEEEecCCCCHHHH
Q 015899 285 KLLGLTALVEV--HDEREM-DRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 361 (398)
Q Consensus 285 ~~LGL~~LVEV--ht~eEl-~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~~~i~~~~i~~~~v~vVAESGI~t~eD~ 361 (398)
+..|.+++--- .+.+++ +.|.+ .++++||+...+-++.+. ..++++.++... ..++. |.-||....+|.
T Consensus 27 ~~~GfeVi~lg~~~s~e~~v~aa~e-~~adii~iSsl~~~~~~~----~~~~~~~L~~~g--~~~i~-vivGG~~~~~~~ 98 (132)
T TIGR00640 27 ADLGFDVDVGPLFQTPEEIARQAVE-ADVHVVGVSSLAGGHLTL----VPALRKELDKLG--RPDIL-VVVGGVIPPQDF 98 (132)
T ss_pred HhCCcEEEECCCCCCHHHHHHHHHH-cCCCEEEEcCchhhhHHH----HHHHHHHHHhcC--CCCCE-EEEeCCCChHhH
Confidence 45688874322 245555 56666 599999998765444333 333333322211 12444 445776688899
Q ss_pred HHHHHcCCCEEE
Q 015899 362 AYVQEAGVKAVL 373 (398)
Q Consensus 362 ~~l~~~GadaVL 373 (398)
..++++|+|+++
T Consensus 99 ~~l~~~Gvd~~~ 110 (132)
T TIGR00640 99 DELKEMGVAEIF 110 (132)
T ss_pred HHHHHCCCCEEE
Confidence 999999999874
No 497
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.25 E-value=13 Score=37.14 Aligned_cols=171 Identities=9% Similarity=0.055 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHcCCcEEEEe-ccCCcCCCCHHHHHHH----Hhc-CCCCcEEeccccCCHH----HHHHHHHcCcCEEEE
Q 015899 198 DPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAV----RSA-GVKCPLLCKEFIVDAW----QIYYARTKGADAVLL 267 (398)
Q Consensus 198 dp~~iA~aY~~~GA~aISVL-Td~~~F~Gs~edL~~I----r~a-~v~lPVL~KDFIid~~----QI~eAr~~GADaVLL 267 (398)
...++.+.+...|+.+|-|+ |=-+|+.=+.+.-..+ ++. .-.+||+..=.-.+.. +...|..+|||+|++
T Consensus 30 ~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv 109 (309)
T cd00952 30 ETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTML 109 (309)
T ss_pred HHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34556777888999999986 2122222233333222 221 2359998543322232 345667889999999
Q ss_pred eccC---CChHH-HHHHHHHHHHc-CCcEEEE--------cCCHHHHHHHhccCCCcEEeeccccCcccccChhhHHHHh
Q 015899 268 IAAV---LPDLD-IRYMTKICKLL-GLTALVE--------VHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334 (398)
Q Consensus 268 iaai---L~~~~-L~~Li~~a~~L-GL~~LVE--------Vht~eEl~rAl~l~Ga~iIGINnRdL~tf~vDl~~t~~L~ 334 (398)
+.-. .++++ ++++-..|... ++.+++= --+.+-+.+..+. ..++||-. -. |+....+++
T Consensus 110 ~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~--pnivgiKd-----ss-d~~~~~~~i 181 (309)
T cd00952 110 GRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQI--PQVVAAKY-----LG-DIGALLSDL 181 (309)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcC--CCEEEEEe-----cC-ChHHHHHHH
Confidence 9774 34444 55555556667 5877653 1145566665554 57999963 24 666666655
Q ss_pred hhhcccccccCCceEEEecCCCCHHHHHHHHHcC--CCEEEEcccccCCCChHH
Q 015899 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG--VKAVLVGESIVKQDDPGK 386 (398)
Q Consensus 335 ~~i~~~~i~~~~v~vVAESGI~t~eD~~~l~~~G--adaVLVGeaLmk~~dp~~ 386 (398)
... +.++.+.. |-.. .+..+.-.| ++|++.|.+-+-++...+
T Consensus 182 ~~~------~~~~~v~~--g~d~--~l~~~~~~~~~~~G~is~~~n~~P~~~~~ 225 (309)
T cd00952 182 AAV------KGRMRLLP--LEDD--YYAAARLFPEEVTAFWSSGAACGPAPVTA 225 (309)
T ss_pred HHc------CCCeEEee--cchh--HHHHHHhcCccCccEEEeccccCcHHHHH
Confidence 431 22444432 2222 122222222 368888877764443333
No 498
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=89.21 E-value=2.3 Score=43.82 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeccCCcCCC------CHHHHHHHHhcCCC-CcEEeccccCCHHHHHHHHH-cCcCEEE
Q 015899 195 EDFDPVEIARSYEKGGAACLSILTDEKYFKG------SFENLEAVRSAGVK-CPLLCKEFIVDAWQIYYART-KGADAVL 266 (398)
Q Consensus 195 ~~~dp~~iA~aY~~~GA~aISVLTd~~~F~G------s~edL~~Ir~a~v~-lPVL~KDFIid~~QI~eAr~-~GADaVL 266 (398)
+..+-+++|+..+.+|++-+-|---...-.| +++.+++||+. +. +||+..+-|.....+..... .|||+|+
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~-~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM 231 (358)
T KOG2335|consen 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVREN-VPDIPVIANGNILSLEDVERCLKYTGADGVM 231 (358)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHh-CcCCcEEeeCCcCcHHHHHHHHHHhCCceEE
Confidence 4557789999999999999999754444444 78899999987 66 99999999999999998866 8999998
Q ss_pred EeccCCChH--------------HHHHHHHHHHHcCC
Q 015899 267 LIAAVLPDL--------------DIRYMTKICKLLGL 289 (398)
Q Consensus 267 LiaaiL~~~--------------~L~~Li~~a~~LGL 289 (398)
..=..|.+. -.++.+.+|.+.+-
T Consensus 232 ~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 232 SARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred ecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 865555322 24566666666653
No 499
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.18 E-value=16 Score=36.11 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=74.6
Q ss_pred CCceEEEEeccCCCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC---CHHHHHHHHhcCCCCcEEeccccCC
Q 015899 175 GLPALIAEVKKASPSRGILREDFDPVEIARSYEKGG-AACLSILTDEKYFKG---SFENLEAVRSAGVKCPLLCKEFIVD 250 (398)
Q Consensus 175 ~~~~vIAEvKraSPSkG~i~~~~dp~~iA~aY~~~G-A~aISVLTd~~~F~G---s~edL~~Ir~a~v~lPVL~KDFIid 250 (398)
..+.|.|.|+.+.-+. + .+.+..+.|+..+..| |++|-| | +.-.| +++.|+.+|++..++|+|.... ++
T Consensus 138 ~~v~i~adV~~kh~~~--l-~~~~~~e~a~~~~~~~~aDaviv-t--G~~TG~~~d~~~l~~vr~~~~~~PvllggG-vt 210 (257)
T TIGR00259 138 SEVKILADIVVKHAVH--L-GNRDLESIALDTVERGLADAVIL-S--GKTTGTEVDLELLKLAKETVKDTPVLAGSG-VN 210 (257)
T ss_pred CCcEEEeceeecccCc--C-CCCCHHHHHHHHHHhcCCCEEEE-C--cCCCCCCCCHHHHHHHHhccCCCeEEEECC-CC
Confidence 3578999987664331 3 2678899999877666 999887 2 22223 6788888887534799987765 78
Q ss_pred HHHHHHHHHcCcCEEEEeccC---------CChHHHHHHHHHHHH
Q 015899 251 AWQIYYARTKGADAVLLIAAV---------LPDLDIRYMTKICKL 286 (398)
Q Consensus 251 ~~QI~eAr~~GADaVLLiaai---------L~~~~L~~Li~~a~~ 286 (398)
+..+.++... ||++.+.+.+ .+.+.++.|++.+++
T Consensus 211 ~eNv~e~l~~-adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 211 LENVEELLSI-ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred HHHHHHHHhh-CCEEEECCCcccCCccCCCcCHHHHHHHHHHHHH
Confidence 8889988876 9999998775 233457777776654
No 500
>PRK14566 triosephosphate isomerase; Provisional
Probab=89.12 E-value=4.6 Score=39.99 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=75.5
Q ss_pred HHHHHcCcCEEEEeccCC------ChHHHHHHHHHHHHcCCcEEEEcCC-HHH-------------HHHHhc-cC---CC
Q 015899 255 YYARTKGADAVLLIAAVL------PDLDIRYMTKICKLLGLTALVEVHD-ERE-------------MDRVLG-IE---GI 310 (398)
Q Consensus 255 ~eAr~~GADaVLLiaaiL------~~~~L~~Li~~a~~LGL~~LVEVht-~eE-------------l~rAl~-l~---Ga 310 (398)
...+.+|++.|+++.+=. +++.+..-++.|.+.||.++++|.. .+| ++.+++ .. ..
T Consensus 89 ~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~~ 168 (260)
T PRK14566 89 QMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAFD 168 (260)
T ss_pred HHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhcC
Confidence 345678999999999833 3555777888899999999999975 332 333333 10 01
Q ss_pred cE-E--------eeccccCcccccChhhHHHHhhhhccc------ccccCCceEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 015899 311 EL-I--------GINNRNLETFEVDNSNTKKLLEGERGE------IIRQKNIIVVGESGLFTPDDIAYVQEA-GVKAVLV 374 (398)
Q Consensus 311 ~i-I--------GINnRdL~tf~vDl~~t~~L~~~i~~~------~i~~~~v~vVAESGI~t~eD~~~l~~~-GadaVLV 374 (398)
++ | |... ..+++...+....+|.. .+ ..++.++-.|.+ +|+.+..+... ++||+||
T Consensus 169 ~ivIAYEPvWAIGTG~------~At~e~a~~v~~~IR~~l~~~~~~~-a~~~rIlYGGSV-~~~N~~~l~~~~dIDG~LV 240 (260)
T PRK14566 169 NAIIAYEPLWAVGTGK------SATPEQAQEVHAFIRKRLSEVSPFI-GENIRILYGGSV-TPSNAADLFAQPDVDGGLI 240 (260)
T ss_pred cEEEEECcHHhcCCCC------CCCHHHHHHHHHHHHHHHHhcCccc-cccceEEecCCC-CHhHHHHHhcCCCCCeEEe
Confidence 11 2 2221 12344444433333321 11 124566666666 88888776544 7999999
Q ss_pred cccccCCCChHHHH
Q 015899 375 GESIVKQDDPGKGI 388 (398)
Q Consensus 375 GeaLmk~~dp~~~i 388 (398)
|.+=.++++-.+.+
T Consensus 241 GgASL~~~~F~~Ii 254 (260)
T PRK14566 241 GGASLNSTEFLSLC 254 (260)
T ss_pred chHhcCHHHHHHHH
Confidence 99877765544333
Done!