RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015899
(398 letters)
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics,
ssgcid, seattle structural GE center for infectious
disease, lyase; 2.15A {Brucella melitensis}
Length = 272
Score = 400 bits (1029), Expect = e-140
Identities = 110/279 (39%), Positives = 168/279 (60%), Gaps = 9/279 (3%)
Query: 120 GNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPAL 179
G+ +IL +I +K E+ K R L LK + R F+ AL A + G AL
Sbjct: 3 GSMSTDILRKIEAYKREEIAAAKARLALDELKARTRDQSAPRGFLKALEAK-RAAGQFAL 61
Query: 180 IAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK 239
IAE+KKASPS+G++R DFDP +A++YE+GGAACLS+LTD F+G+ E L A R A
Sbjct: 62 IAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQA-CS 120
Query: 240 CPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDER 299
P L K+F+ D +Q+Y AR+ GAD +L+I A + D + + LG+ AL+EVHDE
Sbjct: 121 LPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEA 180
Query: 300 EMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPD 359
EM+R L + L+G+NNRNL +FEV+ + +++L + + + ++VGESG+FT +
Sbjct: 181 EMERALKL-SSRLLGVNNRNLRSFEVNLAVSERLAK------MAPSDRLLVGESGIFTHE 233
Query: 360 DIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 398
D ++++G+ L+GES+++Q D L +
Sbjct: 234 DCLRLEKSGIGTFLIGESLMRQHDVAAATRALLTGAEKL 272
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T
structural genomics consortium, TBSGC, lyase; 1.29A
{Mycobacterium tuberculosis}
Length = 272
Score = 386 bits (994), Expect = e-135
Identities = 102/272 (37%), Positives = 153/272 (56%), Gaps = 13/272 (4%)
Query: 122 TPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIA 181
+P +L+ I+ +V + LS +K A APP D + AL R +IA
Sbjct: 2 SPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAAL-----REPGIGVIA 56
Query: 182 EVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCP 241
EVK+ASPS G L DP ++A++Y+ GGA +S++T+++ F+GS ++L+AVR++ V P
Sbjct: 57 EVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRAS-VSIP 115
Query: 242 LLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREM 301
+L K+F+V +QI+ AR GAD +LLI A L + M + LG+TALVEVH E+E
Sbjct: 116 VLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEA 175
Query: 302 DRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDI 361
DR L G ++IG+N R+L T +VD ++ G ++I + ESG+ D+
Sbjct: 176 DRALKA-GAKVIGVNARDLMTLDVDRDCFARIAPG------LPSSVIRIAESGVRGTADL 228
Query: 362 AYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393
AG AVLVGE +V DP + L
Sbjct: 229 LAYAGAGADAVLVGEGLVTSGDPRAAVADLVT 260
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase
and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4
c.1.2.4 PDB: 1jcm_P* 2kzh_A
Length = 452
Score = 368 bits (948), Expect = e-125
Identities = 96/274 (35%), Positives = 147/274 (53%), Gaps = 17/274 (6%)
Query: 125 NILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVK 184
+L +IV K + V KQ++PL+ +N + P R F AL + A I E K
Sbjct: 3 TVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILECK 55
Query: 185 KASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLC 244
KASPS+G++R+DFDP IA Y+ A+ +S+LTDEKYF+GSF L V P+LC
Sbjct: 56 KASPSKGVIRDDFDPARIAAIYK-HYASAISVLTDEKYFQGSFNFLPIVSQI-APQPILC 113
Query: 245 KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRV 304
K+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 114 KDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERA 173
Query: 305 LGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYV 364
+ + G +++GINNR+L +D + T++L N+ V+ ESG+ T + +
Sbjct: 174 IAL-GAKVVGINNRDLRDLSIDLNRTRELAP------KLGHNVTVISESGINTYAQVREL 226
Query: 365 QEAGVKAVLVGESIVKQDDPGKGITGLFGKDISV 398
L+G +++ DD + + + V
Sbjct: 227 S-HFANGFLIGSALMAHDDLHAAVRRVLLGENKV 259
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel
protein, salt bridges, electrostatic interactions,
lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB:
1j5t_A
Length = 251
Score = 346 bits (891), Expect = e-120
Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 21/269 (7%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
L EIV K ++ ++ + F+ L + +IAE KKA
Sbjct: 3 LWEIVEAKKKDILEIDGENLIV--------QRRNHRFLEVLSGKER----VKIIAEFKKA 50
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS G + D + R Y++ A +SILT++ YFKG + A R+ P+L K+
Sbjct: 51 SPSAGDINADASLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH ++++V
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168
Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366
+ ++IGIN R+L+TFE+ + +LL + + +VV ESG+ P ++ ++
Sbjct: 169 VIRPKIIGINTRDLDTFEIKKNVLWELLP------LVPDDTVVVAESGIKDPRELKDLR- 221
Query: 367 AGVKAVLVGESIVKQDDPGKGITGLFGKD 395
V AVLVG SI+K ++P + + +
Sbjct: 222 GKVNAVLVGTSIMKAENPRRFLEEMRAWS 250
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
biosynthesis, riken structural genomics/PR initiative,
RSGI, structural genomics; 1.80A {Thermus thermophilus}
SCOP: c.1.2.4
Length = 254
Score = 341 bits (876), Expect = e-117
Identities = 96/278 (34%), Positives = 143/278 (51%), Gaps = 24/278 (8%)
Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
++ + + +L EI + EV P P F AL
Sbjct: 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEAL-----LRP 44
Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
++IAEVK+ SPS G++R + DPVE A +Y +GGA +S+LT+ F GS +L+ VR
Sbjct: 45 GLSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161
Query: 296 HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355
H ERE++ L G E++GINNR+L T ++ +L R ++V ESG
Sbjct: 162 HTERELEIALEA-GAEVLGINNRDLATLHINLETAPRLGRLARKR---GFGGVLVAESGY 217
Query: 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393
+++ + E AVL+G S+++ D + L G
Sbjct: 218 SRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel
structural proteomics center, is barrel, lyase; 1.45A
{Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A*
3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A
3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X
3ud6_A* ...
Length = 252
Score = 319 bits (820), Expect = e-109
Identities = 80/260 (30%), Positives = 133/260 (51%), Gaps = 16/260 (6%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
+ + +V QL RRP P ++ N+R + A+IA K+
Sbjct: 1 MPRYLKGALKDVVQLSLRRPSLRASRQ----RPIISLRERILEFNKR-NITAIIAVYKRK 55
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS + DP+E A+ E A L ILT+EKYF GS+E+L + S+ V P+L +
Sbjct: 56 SPSGLDVE--RDPIEYAKFME-RYAVGLVILTEEKYFNGSYEDLRKIASS-VSIPILMWD 111
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
FIV QI A GAD V LI +L + ++ + + + G+ + ++DE ++D L
Sbjct: 112 FIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYGMEPAIVINDEEDLDIALR 171
Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366
I G +I I++R+LET E++ N +KL+ I N++ V SG+ ++I +++
Sbjct: 172 I-GARIIIISSRDLETLEINKENQRKLIS----MI--PSNVVKVAASGISERNEIEELRK 224
Query: 367 AGVKAVLVGESIVKQDDPGK 386
GV A +G S+++ + K
Sbjct: 225 LGVNAFEIGSSLMRNPEKIK 244
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 58.2 bits (140), Expect = 6e-10
Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 42/238 (17%)
Query: 178 ALIAEVKKASPSRG------------ILREDFDPVEIARSYEKGGAACLSILTDEKYFKG 225
+L+ ++ K + G L + +A + E+ GA + I
Sbjct: 5 SLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI--------E 56
Query: 226 SFENLEAVRSAGVKCPL--LCKEFIVDA--------WQIYYARTKGADAVLLIAAVLPD- 274
+NL RS V P+ + K + ++ + GA + +
Sbjct: 57 GIDNLRMTRSL-VSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRP 115
Query: 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334
+ + + L + + + + G ++IG T + L+
Sbjct: 116 VAVEALLARIHHHHLLTMADCSSVDDGLACQRL-GADIIGTTMSGYTTPDTPEEPDLPLV 174
Query: 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLF 392
+ + V+ E +P A G AV VG +I + + I G +
Sbjct: 175 K-----ALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEH----ICGWY 223
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 52.7 bits (126), Expect = 3e-08
Identities = 43/226 (19%), Positives = 73/226 (32%), Gaps = 38/226 (16%)
Query: 178 ALIAEVKKASPSRGIL------------REDFDPVEIARSYEKGGAACLSILTDEKYFKG 225
+L+A ++++ G L + +A++ GA + I
Sbjct: 5 SLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRI--------E 56
Query: 226 SFENLEAVRSAGVKCPL--LCKEFIVDA--------WQIYYARTKGADAVLLIAAVLPD- 274
ENL VR + P+ + K + + + GAD + A+
Sbjct: 57 GIENLRTVRPH-LSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRP 115
Query: 275 LDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLL 334
+DI + +L GL A+ + E GIE IG ++
Sbjct: 116 VDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK-GIEFIGTTLSGYTGPITPVEPDLAMV 174
Query: 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380
+ V+ E TP A E G AV VG +I +
Sbjct: 175 T-----QLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 70/432 (16%), Positives = 129/432 (29%), Gaps = 148/432 (34%)
Query: 1 MEGLVSPKTTPRILFP----------TLNRRPSKFSIVRSVPAS-------AMDAH---R 40
+ L+ +F + P K + S+P S + AH
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGVIQL-AHYVVT 252
Query: 41 RNGVGFTPIRAQKAETKDGSATISSVMEDAETAL---KAKEWE------VGMLINEVAAS 91
+GFTP E + + + TA+ + WE + V
Sbjct: 253 AKLLGFTP-----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFF 305
Query: 92 QGIKIRRR-PPTGPPLHYVGPFQFRIQN-EGN-TP----RNILEEIVWHKDVEVT--QLK 142
G++ P T P + + ++N EG +P N+ +E V V T L
Sbjct: 306 IGVRCYEAYPNTSLPPSIL---EDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLP 361
Query: 143 QRRPLSMLKNALDNAPPARDFIGALMAANQRTGLP----ALIAEVKK--ASP----SRGI 192
+ + + +L N ++ + + +G P L ++K A SR
Sbjct: 362 AGKQVEI---SLVNGA--KNLV--V------SGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 193 LRE-------DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENL-EAVRSAGVKCPLLC 244
E F PV + S + + + + + V
Sbjct: 409 FSERKLKFSNRFLPV---------ASPFHS-----HLLVPASDLINKDLVKNNV------ 448
Query: 245 KEFIVDAWQI--YYARTKGADAVLLIAAVLPDLDIRYMTKIC----KLLGLTALVEVHDE 298
F QI Y G+D +L ++ + + + ++ A H
Sbjct: 449 -SFNAKDIQIPVYDTFD-GSDLRVLSGSISERI-VDCIIRLPVKWETTTQFKAT---H-- 500
Query: 299 REMDRVL-----GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGES 353
+L G G+ ++ T + +G G +R +IV G
Sbjct: 501 -----ILDFGPGGASGLGVL----------------THRNKDG-TG--VR---VIVAGTL 533
Query: 354 GLFTPDDIAYVQ 365
+ DD + Q
Sbjct: 534 DINPDDDYGFKQ 545
Score = 43.9 bits (103), Expect = 8e-05
Identities = 56/353 (15%), Positives = 105/353 (29%), Gaps = 114/353 (32%)
Query: 24 KFSIVRSVPASAMDAHRRNGVGFTPIRAQKAETKDGSATISSVMEDAETALKAKEWEVGM 83
+ V + D H ++ GF +I ++ + L
Sbjct: 1638 TSKAAQDV-WNRADNHFKDTYGF---------------SILDIVINNPVNLTIHF----- 1676
Query: 84 LINEVAASQGIKIRRRPPTGPPLHYVGPFQFRIQNEGNT-PRNILEEIVWHKDVEVTQLK 142
+G +IR Y F +G I +EI + T
Sbjct: 1677 -----GGEKGKRIREN--------Y-SAMIFETIVDGKLKTEKIFKEI----NEHSTSYT 1718
Query: 143 QRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILRED--FDPV 200
R +L +A P AL + A ++K S+G++ D F
Sbjct: 1719 FRSEKGLL-SATQFTQP------ALTLMEK-----AAFEDLK----SKGLIPADATF--- 1759
Query: 201 EIARSYEKG---G---A-ACLS-ILTDEKYFKGSFENLEAVRSAGVKCPLLCK--EFIVD 250
A G G A A L+ ++ S E V ++ +
Sbjct: 1760 --A-----GHSLGEYAALASLADVM--------SIE--SLVE-------VVFYRGMTMQV 1795
Query: 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGI 310
A R + + + A+ P ++ AL V ++RV G
Sbjct: 1796 A----VPRDELGRSNYGMIAINPG-------RVAASFSQEALQYV-----VERVGKRTG- 1838
Query: 311 ELIGINNRNLETFEVDNSNTKKLLE--GERGEIIRQKNIIVVGESGLFTPDDI 361
L+ I N N+E + + + L+ I+ + I ++ + +++
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 43.9 bits (103), Expect = 8e-05
Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 71/230 (30%)
Query: 100 PPTGPP------LHYVGPFQFRIQNEGNTPRNILEEIVWH--------KDVE--VTQLKQ 143
PT P L YV ++ +L + D+ +L Q
Sbjct: 53 EPTTPAELVGKFLGYVS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 144 RRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKASPSRGILREDFDPVEIA 203
+++K ++ I + A P K S S +
Sbjct: 111 ENDTTLVK--------TKELIKNYITARIMAKRP-----FDKKSNSA-----------LF 146
Query: 204 RSYEKGGAACLSIL----TDEKYFKGSFE--NL---------EAVRSAGVKCPLLCKEFI 248
R+ +G A ++I + YF+ E +L + ++ + L +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSAETLSELIRT-T 202
Query: 249 VDAWQIYYARTKGADAV--LLIAAVLPDLDIRYMTKI---CKLLGLTALV 293
+DA +++ T+G + + L + PD D Y+ I C L+G+ L
Sbjct: 203 LDAEKVF---TQGLNILEWLENPSNTPDKD--YLLSIPISCPLIGVIQLA 247
Score = 38.1 bits (88), Expect = 0.005
Identities = 39/260 (15%), Positives = 75/260 (28%), Gaps = 88/260 (33%)
Query: 149 MLKNALDNAPPARD-FIGALMAANQRTGLPALIAEVKKASP-----------SRGILRED 196
M + + A+D + A G I ++ +P + I RE+
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRI-REN 1687
Query: 197 FDPVEIARSYEKGGAACLSILTD-----EKY-FKGSFENLE----------AVRSAGVKC 240
+ + I + G I + Y F+ L + A +
Sbjct: 1688 YSAM-IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE- 1745
Query: 241 PLLCKEFIVDAWQIY-------YARTKGADAVLLIAAVLP--DLDIRYMTKICKLL---G 288
L + ++ A + YA A+ +A V+ L +++ G
Sbjct: 1746 -DLKSKGLIPADATFAGHSLGEYA------ALASLADVMSIESL--------VEVVFYRG 1790
Query: 289 LTALVEV-HDER-------------EMDRVLGIEGIELI--GINNRNLETFEVDNSNTKK 332
+T V V DE + E ++ + + R E+ N N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-- 1848
Query: 333 LLEGERGEIIRQKNIIVVGE 352
E + Q + G+
Sbjct: 1849 --ENQ------Q--YVAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 56/366 (15%), Positives = 116/366 (31%), Gaps = 83/366 (22%)
Query: 67 MEDAETALKAKEWEVGMLINEVAASQGIK----IRRRPPTGPPLHYVGP-----FQF--- 114
++D ++ +KE E+ +I A G +V ++F
Sbjct: 38 VQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 115 RIQNEGNTPRNILEEIV-----WHKDVEVT---QLKQRRPLSMLKNALDNAPPARDFI-- 164
I+ E P + + + D +V + + +P L+ AL PA++ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 165 GALMAANQRTGLPALIAEVKKASP-----SRGI----LREDFDPVEIARSYEKGGAACLS 215
G + +G + +V + I L+ P + +K L
Sbjct: 157 G--VLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-----LL 206
Query: 216 ILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLI------A 269
D + S ++ ++ L I + + LL+ A
Sbjct: 207 YQIDPNWTSRS-DHSSNIK--------LRIHSIQAELRRLLKSKPYENC-LLVLLNVQNA 256
Query: 270 AVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSN 329
++ CK+L T +V D + + ++ T D
Sbjct: 257 KAWNAFNLS-----CKILLTTRFKQV-----TDFLSAATTTHISLDHHS--MTLTPDEVK 304
Query: 330 T--KKLLEGERGEIIRQKNII------VVGES---GLFTPDDIAYVQEAGVKAVLVGESI 378
+ K L+ ++ R+ ++ ES GL T D+ +V + ++ ES
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--ESS 362
Query: 379 VKQDDP 384
+ +P
Sbjct: 363 LNVLEP 368
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 39.2 bits (91), Expect = 0.001
Identities = 31/202 (15%), Positives = 67/202 (33%), Gaps = 25/202 (12%)
Query: 191 GILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL------- 243
L F ++A + +GGA + + E++ A++ V P++
Sbjct: 17 EPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKET-VDLPVIGIVKRDY 67
Query: 244 --CKEFIVDAWQ-IYYARTKGADAVLLIAAV--LPDLDIRYMTKIC--KLLGLTALVEVH 296
FI + + + + L A + P + + + + ++
Sbjct: 68 DHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA 127
Query: 297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356
E + G + IG T + ++++ + V+ E +
Sbjct: 128 TVEEAKNAARL-GFDYIGTTLHGY-TSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVI 185
Query: 357 TPDDIAYVQEAGVKAVLVGESI 378
TPD V + GV +VG +I
Sbjct: 186 TPDMYKRVMDLGVHCSVVGGAI 207
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 36.5 bits (84), Expect = 0.009
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 340 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESI 378
E + + I V+ E + +P++ + + GV ++VG +I
Sbjct: 180 EALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAI 218
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 33.8 bits (78), Expect = 0.051
Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 50/200 (25%)
Query: 214 LSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLP 273
L ++T +F + + A+ G+ L R A + +L
Sbjct: 3 LIVVTTPTFFVEEDKIITALFEEGLDILHL--------------RKPETPA-MYSERLLT 47
Query: 274 DLDIRYMTKI--------CKLLGLTALVEVH-DEREMDRVLGIEGIELIGINNRNLETFE 324
+ +Y +I + L +H + R G + + ++E +
Sbjct: 48 LIPEKYHRRIVTHEHFYLKEEFNLMG---IHLNARNPSEPHDYAGH--VSCSCHSVEEVK 102
Query: 325 -------------VDNSNTKKLLEGERG-----EIIRQKNII--VVGESGLFTPDDIAYV 364
+ +S +K E + K I V+ G+ D++ +
Sbjct: 103 NRKHFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGI-NEDNLLEI 161
Query: 365 QEAGVKAVLVGESIVKQDDP 384
++ G +V + + D
Sbjct: 162 KDFGFGGAVVLGDLWNKFDA 181
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 34.2 bits (78), Expect = 0.051
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 5/151 (3%)
Query: 237 GVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVH 296
K A A GAD + + AA I K+ L +E++
Sbjct: 59 NHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIAT-IAACKKVADELNGEIQIEIY 117
Query: 297 DEREMDRVLGIEGIEL-IGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355
M + + I +R+ + T L+ R + + G G+
Sbjct: 118 GNWTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELSITG--GI 175
Query: 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
P+DI + K + G ++ +
Sbjct: 176 -VPEDIYLFEGIKTKTFIAGRALAGAEGQQT 205
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 33.1 bits (75), Expect = 0.11
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 11/172 (6%)
Query: 220 EKYFKGSFENLEAVRSAGVKCPLLCKEFIVDA--WQIYYARTKGADAVLLIAAVLPDLDI 277
+ +++ +L I DA AD V +I +
Sbjct: 37 ILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINT-A 95
Query: 278 RYMTKICKLLGLTALVEVHDEREMDRV--LGIEGIELIGIN-NRNLETFEVDNSNTKKLL 334
+ + K +E+ ++ GI + + +R+ + V
Sbjct: 96 KGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGE----A 151
Query: 335 EGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
+ + + V GL +D+ + + + G SI P +
Sbjct: 152 DITAIKRLSDMGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRDAASPVE 202
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 31.9 bits (72), Expect = 0.25
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 7/167 (4%)
Query: 222 YFKGSFENLEAVRSAGVKCPLLC--KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRY 279
+ AV+ A + K + A GAD V ++ + I
Sbjct: 36 IKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDST-IAG 94
Query: 280 MTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERG 339
K + +V++ D+ + + +G + +D
Sbjct: 95 AVKAAQAHNKGVVVDLIGI--EDKATRAQEVRALGAKFVEMHA-GLDEQAKPGFDLNGLL 151
Query: 340 EIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
+ + G+ I VQ+AG + + G +I DP
Sbjct: 152 AAGEKARVPFSVAGGV-KVATIPAVQKAGAEVAVAGGAIYGAADPAA 197
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural
genomics, protein structure initiative, PSI; 2.90A
{Pseudomonas aeruginosa} SCOP: c.1.31.1
Length = 265
Score = 30.3 bits (69), Expect = 0.85
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 182 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 225
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein
structure initiative, PSI, NESG, northeast structural
genomics consortium; 1.80A {Bacillus subtilis} SCOP:
c.1.31.1 PDB: 1tyg_A
Length = 264
Score = 30.3 bits (69), Expect = 0.93
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
II Q + V+ ++G+ +P D AY E G VL+ ++ DDP
Sbjct: 173 IIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDP 216
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 29.6 bits (66), Expect = 1.7
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
+ D + + V + G I + +P
Sbjct: 178 SVDTLKLFEGVDVFTFIAGRGITEAKNPAG 207
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 29.4 bits (67), Expect = 1.8
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 193 LREDFDPVEIARSYEKGGA 211
+ + + E Y++
Sbjct: 8 VDDATNGREAVEKYKELKP 26
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 29.4 bits (67), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 193 LREDFDPVEIARSYEKGGA 211
LR+ DPVE+ + Y + G
Sbjct: 26 LRDSGDPVELGKFYSEIGI 44
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 193 LREDFDPVEIARSYEKGGA 211
LR+ DPVE AR+Y++ GA
Sbjct: 27 LRDAGDPVEAARAYDEAGA 45
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 193 LREDFDPVEIARSYEKGGA 211
+RE DPVE+A YE+ GA
Sbjct: 29 IREVGDPVEMAVRYEEEGA 47
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 29.1 bits (66), Expect = 2.6
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 198 DPVEIARSYEKGGA 211
+ EK GA
Sbjct: 31 LLRDWVVEVEKRGA 44
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.0 bits (66), Expect = 2.7
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 198 DPVEIARSYEKGGA 211
+ EK GA
Sbjct: 36 LLRDWVVEVEKRGA 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 137 EVTQLKQRRPL-SMLK-NALDNAPPARDFIGALMAAN 171
E LK+ L + LK A D+AP AL A
Sbjct: 18 EKQALKK---LQASLKLYADDSAP-------AL-AIK 43
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.8 bits (65), Expect = 3.4
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 347 IIVVGESGLFTPDDIAY-VQEAGVKAVLVGESIVKQ 381
+I + + DI Y +Q + KA++ G+ ++++
Sbjct: 124 LIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQE 159
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis,
PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal
phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB:
2vd9_A* 3ha1_A*
Length = 391
Score = 28.4 bits (63), Expect = 4.6
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 12/47 (25%)
Query: 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAV--RSAGVKCPLLC 244
V +A + GA L++ + EA+ R AG+ P+L
Sbjct: 52 VPVAXIALEAGATRLAVAFLD----------EALVLRRAGITAPILV 88
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 27.6 bits (61), Expect = 4.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 353 SGLFTPDDIAYVQEAGVKAVL 373
SGL + +++AGV V+
Sbjct: 25 SGLPNEQQFSLLKQAGVDVVI 45
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans;
5-methyltetrahydrofolate,methyltransferase, TIM barrel,
STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A
{Bacteroides thetaiotaomicron}
Length = 300
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 192 ILREDFDP-VEIARSYEKGGAACLSI-----LTDEKYFKGSFENLEAVRSAGVKCPL 242
+ + +D + IAR + GA + + L D + +F NL + P+
Sbjct: 31 VNEKKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPV 87
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal
phosphate, structural genomi NPPSFA; 2.30A
{Methanocaldococcus jannaschii}
Length = 330
Score = 27.8 bits (61), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
++ G+ TP D A + + G V VG I K ++P +
Sbjct: 243 VVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLE 282
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification,
PUA domain, M3U, SAM, structural genomics, NPPSFA; HET:
SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Length = 229
Score = 27.6 bits (62), Expect = 7.3
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 319 NLETFEVDNSNTKKLLEGERGEIIRQKNI------IVVGESGLFTPDDIAYVQEAGVKAV 372
L ++ L G + N+ +VVG G F+ + ++E G K+V
Sbjct: 147 RLSDLIPESEENIILDNFYEGVKPKDVNLEAKTYSVVVGPEGGFSKRESQILREKGFKSV 206
Query: 373 LVGESI 378
L+
Sbjct: 207 LLEPYT 212
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 27.6 bits (62), Expect = 7.4
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 341 IIRQK--NIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
R+K VV ++GL P A V E G+ AVLV +I + DP
Sbjct: 171 FAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDP 216
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET:
PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Length = 371
Score = 27.8 bits (63), Expect = 7.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 200 VEIARSYEKGGAACLSILTDEKYFKGSFENLEAV--RSAGVKCPLLC 244
VE A++ +KGGA + + EA+ R AGV+ P+L
Sbjct: 49 VESAKAAKKGGATGFCVALLD----------EAIELREAGVQDPILI 85
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 27.6 bits (61), Expect = 7.8
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 211 AACLSILTDEKYFKGSFEN----LEAVRSAGVKCPLLCKEFIVDAWQIYYARTK 260
A D+++ G+ L+ + K +L I Y +K
Sbjct: 54 AGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESK 107
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 27.3 bits (61), Expect = 8.5
Identities = 36/206 (17%), Positives = 66/206 (32%), Gaps = 28/206 (13%)
Query: 194 REDFDPVEIARSYEKGGAACLSI---LTDEKYFKGSFENLEAVRSAGVKCPLLCKE---- 246
RE D + A + GG + + + + G + + + +
Sbjct: 40 RERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAAC-EILADAAHRYGAL 98
Query: 247 FIV-DAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVL 305
F V D I AR GAD + L LP R + L+G + HD ++
Sbjct: 99 FAVNDRADI--ARAAGADVLHLGQRDLPVNVARQILAPDTLIGRST----HDPDQVAAAA 152
Query: 306 GIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF-----TPDD 360
+ + + + TK ++R + + F
Sbjct: 153 A-GDADYFCVGP----CWP---TPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQR 204
Query: 361 IAYVQEAGVKAVLVGESIVKQDDPGK 386
+ V +AG + ++V +I DDP
Sbjct: 205 LPAVLDAGARRIVVVRAITSADDPRA 230
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 27.1 bits (61), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
P I AG ++ G SI +PG+ I+ L
Sbjct: 183 GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISAL 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,211,740
Number of extensions: 397814
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1093
Number of HSP's successfully gapped: 84
Length of query: 398
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 302
Effective length of database: 4,021,377
Effective search space: 1214455854
Effective search space used: 1214455854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)