RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015899
(398 letters)
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 201 bits (511), Expect = 5e-63
Identities = 96/278 (34%), Positives = 144/278 (51%), Gaps = 24/278 (8%)
Query: 116 IQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTG 175
++ + + +L EI + EV P P F AL+
Sbjct: 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEP-----------PSVPSFKEALLRPG---- 45
Query: 176 LPALIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRS 235
++IAEVK+ SPS G++R + DPVE A +Y +GGA +S+LT+ F GS +L+ VR
Sbjct: 46 -LSVIAEVKRQSPSEGLIR-EVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVRE 103
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEV 295
A V PLL K+F+VD + + AR GA A LLI A+L +L Y+ + + LGL ALVEV
Sbjct: 104 A-VDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYL-EEARRLGLEALVEV 161
Query: 296 HDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGL 355
H ERE++ G E++GINNR+L T ++ +L R R ++V ESG
Sbjct: 162 HTERELEIA-LEAGAEVLGINNRDLATLHINLETAPRLGRLAR---KRGFGGVLVAESGY 217
Query: 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGLFG 393
+++ + E AVL+G S+++ D + L G
Sbjct: 218 SRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELVG 254
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 183 bits (465), Expect = 3e-56
Identities = 83/266 (31%), Positives = 140/266 (52%), Gaps = 21/266 (7%)
Query: 127 LEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEVKKA 186
L EIV K ++ ++ + +N F+ L + +IAE KKA
Sbjct: 3 LWEIVEAKKKDILEIDGENLIVQRRN--------HRFLEVLSGKER----VKIIAEFKKA 50
Query: 187 SPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKE 246
SPS G + D + R Y++ A SILT++ YFKG + A R+ P+L K+
Sbjct: 51 SPSAGDINADASLEDFIRMYDELADAI-SILTEKHYFKGDPAFVRAARNL-TCRPILAKD 108
Query: 247 FIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLG 306
F +D Q+ A + GADA+L+IA +L I+ + + + LG+ +LVEVH ++++V
Sbjct: 109 FYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFS 168
Query: 307 IEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQE 366
+ ++IGIN R+L+TFE+ + +LL + + +VV ESG+ P ++ ++
Sbjct: 169 VIRPKIIGINTRDLDTFEIKKNVLWELLP------LVPDDTVVVAESGIKDPRELKDLR- 221
Query: 367 AGVKAVLVGESIVKQDDPGKGITGLF 392
V AVLVG SI+K ++P + + +
Sbjct: 222 GKVNAVLVGTSIMKAENPRRFLEEMR 247
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 174 bits (443), Expect = 5e-53
Identities = 93/268 (34%), Positives = 144/268 (53%), Gaps = 17/268 (6%)
Query: 124 RNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAEV 183
+ +L +IV K + V KQ++PL+ +N + P R F AL + A I E
Sbjct: 2 QTVLAKIVADKAIWVEARKQQQPLASFQNEV--QPSTRHFYDAL-----QGARTAFILEC 54
Query: 184 KKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLL 243
KKASPS+G++R+DFDP I + K A+ +S+LTDEKYF+GSF L V P+L
Sbjct: 55 KKASPSKGVIRDDFDPARI-AAIYKHYASAISVLTDEKYFQGSFNFLPIVSQ-IAPQPIL 112
Query: 244 CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDR 303
CK+FI+D +QIY AR ADA LL+ +VL D R + + L + L EV +E E +R
Sbjct: 113 CKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQER 172
Query: 304 VLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAY 363
+ + +++GINNR+L +D + T++L N+ V+ ESG+ T +
Sbjct: 173 AIALG-AKVVGINNRDLRDLSIDLNRTRELAP------KLGHNVTVISESGINTYAQVRE 225
Query: 364 VQEAGVKAVLVGESIVKQDDPGKGITGL 391
+ L+G +++ DD + +
Sbjct: 226 L-SHFANGFLIGSALMAHDDLHAAVRRV 252
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 174 bits (441), Expect = 8e-53
Identities = 93/264 (35%), Positives = 143/264 (54%), Gaps = 21/264 (7%)
Query: 123 PRNILEEIVWHKDVEVTQLKQRRPLSMLKNALDNAPPARDFIGALMAANQRTGLPALIAE 182
PR L+ W KDV QL RRP P ++ N + + A+IAE
Sbjct: 1 PR-YLKG--WLKDVV--QLSLRRPSFRASRQR----PIISLNERILEFN-KRNITAIIAE 50
Query: 183 VKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL 242
K+ SPS + DP+E ++ E+ A LSILT+EKYF GS+E L + S V P+
Sbjct: 51 YKRKSPSGLD--VERDPIEYSKFMERY-AVGLSILTEEKYFNGSYETLRKIAS-SVSIPI 106
Query: 243 LCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMD 302
L K+FIV QI A GAD VLLI +L + ++ + + + G+ L+E++DE ++D
Sbjct: 107 LMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLD 166
Query: 303 RVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIA 362
L I G IGIN+R+LET E++ N +KL+ + N++ V ESG+ ++I
Sbjct: 167 IALRI-GARFIGINSRDLETLEINKENQRKLIS------MIPSNVVKVAESGISERNEIE 219
Query: 363 YVQEAGVKAVLVGESIVKQDDPGK 386
+++ GV A L+G S+++ + K
Sbjct: 220 ELRKLGVNAFLIGSSLMRNPEKIK 243
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 83.8 bits (206), Expect = 3e-19
Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 15/213 (7%)
Query: 179 LIAEVKKASPSRGILREDFDPV-EIARSYEKGGAACLSI--LTDEKYFKGSFENLEAVRS 235
+I + A P + E + +A++ ++ GA + + D K + +
Sbjct: 15 IIVSCQ-ALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGII 73
Query: 236 AGVKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLL-----GLT 290
P ++ + + D + + +
Sbjct: 74 K-KDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQL 132
Query: 291 ALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVV 350
+ ++ E GI+ +G + + L E + + I V+
Sbjct: 133 LMADISTFDEGLVAHQA-GIDFVGTTLSGYTPYSRQEAGPDVALI----EALCKAGIAVI 187
Query: 351 GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383
E + +P++ + + GV ++VG +I + +
Sbjct: 188 AEGKIHSPEEAKKINDLGVAGIVVGGAITRPKE 220
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 81.8 bits (201), Expect = 1e-18
Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 23/217 (10%)
Query: 179 LIAEVKKASPSRGILREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSA-G 237
LI + + L F ++A + +GGA + + E++ A++
Sbjct: 7 LIVSCQ--ALPDEPLHSSFIMSKMALAAYEGGAVGIRA--------NTKEDILAIKETVD 56
Query: 238 VKCPLLCKEFIVDAWQIYYARTK--------GADAVLLIAAVLP--DLDIRYMTKICKLL 287
+ + K + A +K + + L A + + + +
Sbjct: 57 LPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTH 116
Query: 288 GLTALVEVHDEREMDRVLGIE-GIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKN 346
+ + G + IG ++ + + + ++++ +
Sbjct: 117 APNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLK-DVLQSVD 175
Query: 347 IIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDD 383
V+ E + TPD V + GV +VG +I + +
Sbjct: 176 AKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKE 212
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 46.2 bits (109), Expect = 2e-06
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 15/216 (6%)
Query: 185 KASPSRGILREDFDPV-EIARSYEKGGAACLSI-LTDEKYFKGSFENLEAVRS--AGVKC 240
K +PS IL D+ E+ A + I + D ++ + V S K
Sbjct: 3 KIAPS--ILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKL 60
Query: 241 PLLCKEFIVDAW-QIYYARTKGADAVLLIAAVLPDLDIRYMTKICKL---LGLTALVEVH 296
C +VD + GAD + + + + KI G+
Sbjct: 61 VFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIH-GALQKIKAAGMKAGVVINPGTP 119
Query: 297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNI-IVVGESGL 355
+ ++ + ++ +N + K + +K + + G
Sbjct: 120 ATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEK---VATVAKWRDEKGLSFDIEVDGG 176
Query: 356 FTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
I EAG + G + K D + L
Sbjct: 177 VDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTL 212
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 42.9 bits (100), Expect = 3e-05
Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPL--LCKEFIVD 250
LR+ DPVE+ + Y + G L L + LE V + + I D
Sbjct: 26 LRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHD 85
Query: 251 AWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGI 310
+GAD V + A + + + +T+I + G A+V D + +D +
Sbjct: 86 FETASELILRGADKVSINTAAVENPSL--ITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY 143
Query: 311 ELIGINNRNLETFE---------------VDNSNTKKLLEGERGEIIRQKNIIVVGESG- 354
L + +D TK + E +R + + SG
Sbjct: 144 SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGG 203
Query: 355 LFTPDDIAYVQEAGVKAVLVGESI 378
+ AG A L
Sbjct: 204 AGKMEHFLEAFLAGADAALAASVF 227
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 39.6 bits (91), Expect = 3e-04
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 292 LVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVG 351
V + +E ELIG + +NT +L++ + V+
Sbjct: 127 AVSAAVAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVN------PEVKVLC 180
Query: 352 ESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
+G+ T +D+ E G VL+ + K DP K I L
Sbjct: 181 GAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL 220
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 37.6 bits (86), Expect = 0.001
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 1/114 (0%)
Query: 276 DIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335
D+ + K LGL +V D R + + + T + + +
Sbjct: 102 DLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIV 161
Query: 336 GERGEIIRQ-KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 388
G + R + V+ +G+ + DD+A G + VL+ + VK DP I
Sbjct: 162 ETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKI 215
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 37.0 bits (85), Expect = 0.002
Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 18/203 (8%)
Query: 193 LREDFDPVEIARSYEKGGAACLSIL--TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVD 250
LR+ DPVE AR+Y++ GA L L + + ++ A + V PL +
Sbjct: 26 LRDAGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRS 85
Query: 251 AWQIYYARTKGADAVLL--IAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIE 308
GAD V + A P+L IR + + ++ + V
Sbjct: 86 LEDARKLLLSGADKVSVNSAAVRRPEL-IRELADHFGAQAVVLAIDARWRGDFPEVHVAG 144
Query: 309 GIELIGINNRNLETFE------------VDNSNTKK-LLEGERGEIIRQKNIIVVGESGL 355
G G++ +D TK+ + + V+ G
Sbjct: 145 GRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGA 204
Query: 356 FTPDDIAYVQEAGVKAVLVGESI 378
+ +AG +A L
Sbjct: 205 GRMEHFLEAFQAGAEAALAASVF 227
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 36.0 bits (83), Expect = 0.004
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
I+ + + V+ ++G+ T D A E G +AVL+ +I DP
Sbjct: 174 ILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDP 217
Score = 27.2 bits (60), Expect = 3.7
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 198 DPVEIARSYEKGGAACLSILTDEKYFKGSFENLEA--VRSAGVKCPLLCKEFIVDAWQIY 255
DP+ IAR + G + L N + K P+L + A
Sbjct: 137 DPI-IARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAA 195
Query: 256 YARTKGADAVLLIAAV 271
A G +AVL+ A+
Sbjct: 196 IAMELGCEAVLMNTAI 211
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 35.5 bits (82), Expect = 0.007
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 340 EIIRQKNIIVV--GESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
EI R + VV G+ TP D A + G V VG I K ++P K
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEK 229
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 35.2 bits (81), Expect = 0.008
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 328 SNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDP 384
S L II Q + V+ ++G+ +P D AY E G VL+ ++ DDP
Sbjct: 159 SGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDP 215
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 35.2 bits (80), Expect = 0.009
Identities = 27/215 (12%), Positives = 59/215 (27%), Gaps = 16/215 (7%)
Query: 187 SPSRGILREDFDPV--EIARSYEKGGAACLSI-LTDEKYFKG---SFENLEAVRSAGVKC 240
+PS +L + + E R E GA + + + D + + ++
Sbjct: 6 APS--VLASNISKLAEETQR-MESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSI 62
Query: 241 PLLC-KEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALV---EVH 296
+ +T A + K + L +
Sbjct: 63 FFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKT 122
Query: 297 DEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLF 356
D +++ +L I + + + + KN+ + + GL
Sbjct: 123 DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMM--GKVSFLRKKYKNLNIQVDGGL- 179
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
+ G ++ G SI +DP I +
Sbjct: 180 NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTM 214
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 32.9 bits (74), Expect = 0.044
Identities = 18/152 (11%), Positives = 35/152 (23%), Gaps = 5/152 (3%)
Query: 238 VKCPLLCKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHD 297
K AD V +I + + + G +
Sbjct: 55 KIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGY 114
Query: 298 EREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNI-IVVGESGLF 356
+ GI + E + I R ++ V +G
Sbjct: 115 WTWEQ----AQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGL 170
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGI 388
+D+ + + + G SI P +
Sbjct: 171 ALEDLPLFKGIPIHVFIAGRSIRDAASPVEAA 202
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 31.9 bits (72), Expect = 0.11
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 22/202 (10%)
Query: 193 LREDFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVK--CPLLCKEFIVD 250
+RE DPVE+A YE+ GA ++IL +G +++V+ P+L +
Sbjct: 28 IREVGDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRS 87
Query: 251 AWQIYYARTKGADAVLLIAAVLPD-------LDIRYMTKI-----CKLLGLTALVEVHDE 298
GAD V + A + + K G V V
Sbjct: 88 LEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGG 147
Query: 299 REMDRVLGIEGIELIG-INNRNLETF---EVDNSNTKKLLEGERGEIIRQK-NIIVVGES 353
RE G++ ++ + +D T + E + I V+
Sbjct: 148 RE---ATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 204
Query: 354 GLFTPDDIAYVQEAGVKAVLVG 375
G + AG AVL
Sbjct: 205 GAGRVEHFYEAAAAGADAVLAA 226
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 31.8 bits (71), Expect = 0.12
Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 22/198 (11%)
Query: 198 DPVEIARSYEKGGAACLSIL-TDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
P+E A ++++ GA L ++ D + G L A + + + I D +
Sbjct: 32 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAA 91
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316
A G V L A + + K++ L G G +
Sbjct: 92 ALATGCTRVNLGTAA-----LETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGD 146
Query: 317 NRNLETFEVDNSNTKKLL---------EGERGEIIRQK----NIIVVGESGLFTPDDI-- 361
+ ++ +G E+++ + VV G+ + DD+
Sbjct: 147 LYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 362 -AYVQEAGVKAVLVGESI 378
A + AGV+ +VG+++
Sbjct: 207 IAGLVPAGVEGAIVGKAL 224
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 30.5 bits (68), Expect = 0.24
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
P++ V EAG A++ G ++ + + I G+
Sbjct: 181 KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGV 215
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 30.6 bits (68), Expect = 0.25
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
P I AG ++ G SI +PG+ I+ L
Sbjct: 178 GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISAL 212
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 30.0 bits (67), Expect = 0.39
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 357 TPDDIAYVQEAGVKAVLVGESIVKQDDPGKGITGL 391
P + V EAG A++ G ++ D + I G+
Sbjct: 189 GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGI 223
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 29.6 bits (65), Expect = 0.50
Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 15/196 (7%)
Query: 198 DPVEIARSYEKGGAACLSILT-DEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIYY 256
DPVE+ + G + ++ + + + I
Sbjct: 31 DPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFAEHIQIGGGIRSLDYAEK 90
Query: 257 ARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGIN 316
R G ++ + VL D + + + +L L E I+ + +
Sbjct: 91 LRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLL 150
Query: 317 NRNLE--------TFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAG 368
R E T + ++ +I + + V+ G+ + + + Q+
Sbjct: 151 KRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVH 210
Query: 369 ------VKAVLVGESI 378
+K V+VG +
Sbjct: 211 TETNGLLKGVIVGRAF 226
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
[TaxId: 554]}
Length = 271
Score = 29.7 bits (66), Expect = 0.52
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 95 KIRRRPPTGPPLHYVGPFQFRIQNEGNTPRNILEEIVWHKDVEVTQLKQRRPLSMLKNAL 154
I + + +++ E ++ +H D L + L A
Sbjct: 62 TIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHAD--GGLLLSQVDQVFLY-AA 118
Query: 155 DNAPPARDFIGALMAANQRTGLPALIAEVKK 185
+ GA + + A + +
Sbjct: 119 EIKNVKFR--GATTVCDHALACQEMPAHLLR 147
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 29.4 bits (65), Expect = 0.54
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 341 IIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQDDPGK 386
I+ I VV G+ D+ V + GV + V +++ +D K
Sbjct: 148 IVESVKIPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGAEDVRK 192
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c
{Streptococcus mutans [TaxId: 1309]}
Length = 253
Score = 28.1 bits (61), Expect = 1.5
Identities = 8/63 (12%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 321 ETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVK 380
+ + + + +++ I+VG++ DI + + +LV K
Sbjct: 174 KPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDN---YLTDITAGIKNDIATLLVTTGFTK 230
Query: 381 QDD 383
++
Sbjct: 231 PEE 233
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 28.2 bits (62), Expect = 1.7
Identities = 21/166 (12%), Positives = 51/166 (30%), Gaps = 9/166 (5%)
Query: 222 YFKGSFENLEAVRSAGVKCPLL---CKEFIVDAWQIYYARTKGADAVLLIAAVLPDLDIR 278
+ +F ++ R +L + + A K + ++ LP +
Sbjct: 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAK 123
Query: 279 YMTKICKLLGLTA---LVEVHDEREMDRVLGIEGIELIGINNRNLETFEVDNSNTKKLLE 335
T+I + G+ + + + + + ++ + T L
Sbjct: 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDL- 182
Query: 336 GERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381
R V G+ + + + + G V+VG ++VK
Sbjct: 183 --LRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI 226
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia
coli [TaxId: 562]}
Length = 197
Score = 27.0 bits (58), Expect = 3.3
Identities = 16/188 (8%), Positives = 51/188 (27%), Gaps = 7/188 (3%)
Query: 196 DFDPVEIARSYEKGGAACLSILTDEKYFKGSFENLEAVRSAGVKCPLLCKEFIVDAWQIY 255
D D + ++ L+ L + +F E + +
Sbjct: 13 DIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPLSYE 72
Query: 256 YARTKGADAVLLIAAVLPDLDIRYMTKICKLLGLTALVEVHDEREMDRVLGIEGIELIGI 315
+ + + + + + +++ L+ +H + I
Sbjct: 73 QFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIY 132
Query: 316 NNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVKAVLVG 375
+ + + + + E + + ++ D+I + G+ ++LV
Sbjct: 133 LS---QDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDN----ADNIEGANQLGITSILVK 185
Query: 376 ESIVKQDD 383
+ D
Sbjct: 186 DKTTIPDY 193
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 26.7 bits (58), Expect = 4.4
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 344 QKNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQ 381
K + V G+ P+ + + + G V++G ++V+Q
Sbjct: 200 NKPVAV--GFGISKPEHVKQIAQWGADGVIIGSAMVRQ 235
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 26.7 bits (58), Expect = 4.9
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 311 ELIGINNRNLETFEVDNSNTKKLLEGERGEIIRQKNIIVVGESGLFTPDDIAYVQEAGVK 370
+ +R+ T + E+ + + G+ +P+ ++ AG
Sbjct: 172 GYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQ--GFGISSPEQVSAAVRAGAA 229
Query: 371 AVLVGESIVKQ-----DDPGKGITGL 391
+ G +IVK P + + L
Sbjct: 230 GAISGSAIVKIIEKNLASPKQMLAEL 255
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 26.9 bits (58), Expect = 5.3
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 345 KNIIVVGESGLFTPDDIAYVQEAGVKAVLVGESIVKQD 382
++ G+ + + +G + V ++ QD
Sbjct: 254 PGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQD 291
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.390
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,458,961
Number of extensions: 70195
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 36
Length of query: 398
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 311
Effective length of database: 1,213,086
Effective search space: 377269746
Effective search space used: 377269746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)