Query 015900
Match_columns 398
No_of_seqs 125 out of 330
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 1.9E-53 6.7E-58 374.5 12.9 136 68-208 5-140 (141)
2 2yud_A YTH domain-containing p 100.0 1.3E-52 4.6E-57 382.4 11.2 149 68-216 23-173 (180)
3 2hd9_A UPF0310 protein PH1033; 97.3 0.0022 7.4E-08 56.1 11.5 131 72-206 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 96.3 0.011 3.7E-07 51.8 8.0 129 71-205 4-147 (147)
5 3eop_A Thymocyte nuclear prote 46.9 31 0.0011 31.5 5.8 135 72-208 2-169 (176)
6 2eve_A Hypothetical protein ps 39.3 47 0.0016 29.8 5.6 130 72-205 2-148 (157)
7 2ar1_A Hypothetical protein; s 32.9 62 0.0021 29.4 5.4 133 70-206 18-166 (172)
8 2jvf_A De novo protein M7; tet 23.0 10 0.00035 30.7 -1.3 15 183-197 8-22 (96)
9 1zce_A Hypothetical protein AT 22.5 1.1E+02 0.0038 27.3 5.0 124 72-207 3-138 (155)
10 3zzy_A Polypyrimidine tract-bi 13.8 2.2E+02 0.0074 24.0 4.7 37 98-134 40-76 (130)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-53 Score=374.45 Aligned_cols=136 Identities=46% Similarity=0.734 Sum_probs=132.0
Q ss_pred CCCceEEEEEeCChhHHHHHhhcCeeeecCCChHHHHHHhhcCCcEEEEEEecCCCceeEEEEeeccCCCCCCccccCCC
Q 015900 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRRDNVWSQGN 147 (398)
Q Consensus 68 ~~~aRFFIIKS~NeeNI~lSik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~id~~~~~iW~~~~ 147 (398)
..++|||||||++++||++|++||||+||++||++|++||+++++||||||||+||+|||||+|+|++++....+|++
T Consensus 5 ~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~~~~~~W~~-- 82 (141)
T 2yu6_A 5 SSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGS-- 82 (141)
T ss_dssp CCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSSCCCCCCSC--
T ss_pred CCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCCCCCccccc--
Confidence 469999999999999999999999999999999999999999999999999999999999999999999977789986
Q ss_pred CCCCCCCCceeEEEEEeecCCCCcccCccCCCCCCCCeecCCCCcccChhHHHHHHHHccC
Q 015900 148 GKNNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDG 208 (398)
Q Consensus 148 g~~~~wgg~FkVeWL~v~dLPF~~t~HLrNplNeNKPVkisRDGQEIepeiG~qLc~LF~~ 208 (398)
.+|+|.|+|+||++++|||..++||+||+|+||||+++||||||++++|.+||+||+.
T Consensus 83 ---~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~ 140 (141)
T 2yu6_A 83 ---AGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWER 140 (141)
T ss_dssp ---SCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGT
T ss_pred ---cccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhh
Confidence 6999999999999999999999999999999999999999999999999999999975
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=382.36 Aligned_cols=149 Identities=42% Similarity=0.679 Sum_probs=138.9
Q ss_pred CCCceEEEEEeCChhHHHHHhhcCeeeecCCChHHHHHHhhcCCcEEEEEEecCCCceeEEEEeeccCCCCC-CccccCC
Q 015900 68 LYNTRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSVGWRR-DNVWSQG 146 (398)
Q Consensus 68 ~~~aRFFIIKS~NeeNI~lSik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~id~~~-~~iW~~~ 146 (398)
+.++|||||||+|++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++... ..+|..+
T Consensus 23 ~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~ 102 (180)
T 2yud_A 23 LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 102 (180)
T ss_dssp TTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCC
T ss_pred cCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCcccccc
Confidence 479999999999999999999999999999999999999999999999999999999999999999998765 4678764
Q ss_pred CCC-CCCCCCceeEEEEEeecCCCCcccCccCCCCCCCCeecCCCCcccChhHHHHHHHHccCCCCccccc
Q 015900 147 NGK-NNPWGRSFKVKWLRLNTLPFQKTLHLKNPLNDYKPVKISRDCQELPQDIGEALCHLLDGKDDVDGIQ 216 (398)
Q Consensus 147 ~g~-~~~wgg~FkVeWL~v~dLPF~~t~HLrNplNeNKPVkisRDGQEIepeiG~qLc~LF~~~~~~~sil 216 (398)
.+. ..+|+|.|+|+||++++|||..++||+||||+||||+++||||||++++|.+||+||..+++++.+.
T Consensus 103 ~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L~~lf~~~~~~~~~~ 173 (180)
T 2yud_A 103 AGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQ 173 (180)
T ss_dssp SSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHHHHHSCCCSSSCSHH
T ss_pred CccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHHHHhcccCcCccHHH
Confidence 332 3679999999999999999999999999999999999999999999999999999999998888654
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=97.31 E-value=0.0022 Score=56.13 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=84.8
Q ss_pred eEEEEEeCChhHHHHHhhcCeeeecCCChHHHHHHhhcCCcEEEEEEecCC--------CceeEEEEeeccCCCCCCccc
Q 015900 72 RYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVNMS--------GFFQGYAQMMSSVGWRRDNVW 143 (398)
Q Consensus 72 RFFIIKS~NeeNI~lSik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN~S--------G~FqGyArM~S~id~~~~~iW 143 (398)
+|.|+|| +.+++...++.|+|-. .+..+...++-+ .+..+|||+-+.. ..|.|+|++++.+-...+.+|
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~mk-~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~t~~~ 78 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRVK-PGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDFSRIF 78 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCC-TTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECCCCCS
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhCC-CCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCCCccC
Confidence 5999998 9999999999999977 544444444433 4667777876655 799999999987543333333
Q ss_pred cCCCCCCCCCCCceeEEEEEeecCCCCcccC----ccCCCCCCCCeecCCCCcccChhHHHHHHHHc
Q 015900 144 SQGNGKNNPWGRSFKVKWLRLNTLPFQKTLH----LKNPLNDYKPVKISRDCQELPQDIGEALCHLL 206 (398)
Q Consensus 144 ~~~~g~~~~wgg~FkVeWL~v~dLPF~~t~H----LrNplNeNKPVkisRDGQEIepeiG~qLc~LF 206 (398)
-++.-.....--...|+++.+..+|+..+.. |+|+-+=..++ .-+--++|+++....||+.|
T Consensus 79 ~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 79 KPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCTTSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCcccccCCeeEEEeCEEEeeccCcHHHHHhhhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 2210001222245678999999999886532 33321111222 02338999999999999865
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=96.35 E-value=0.011 Score=51.82 Aligned_cols=129 Identities=15% Similarity=0.296 Sum_probs=82.5
Q ss_pred ceEEEEEeCChhHHHHHhhcCeeeecCCChHHHHHHhhcCCcEEEEEEec------CCCceeEEEEeeccCCCCCCcccc
Q 015900 71 TRYFIIKSLNHQNIQLSIEKEIWATQVMNEPILEEAFHNSGKVILIFSVN------MSGFFQGYAQMMSSVGWRRDNVWS 144 (398)
Q Consensus 71 aRFFIIKS~NeeNI~lSik~GIWaTt~~NekkLneAFk~s~~VyLIFSVN------~SG~FqGyArM~S~id~~~~~iW~ 144 (398)
-+|.|+|+ +.+++...++.|+|-. .+.-+...++-+. +.-+|||... .-..|.|+|++++..-...+.+|.
T Consensus 4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk~-GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~t~~dp 80 (147)
T 2p5d_A 4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVKV-GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDSSKIFK 80 (147)
T ss_dssp CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCCT-TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECCCCCSC
T ss_pred ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCCC-CCEEEEEEecccCCCCCCCEEEEEEEEecccccCCcccCc
Confidence 47999995 6778999999999966 4444444454444 4556666332 345899999999865333333333
Q ss_pred CCCCC-CCCCCCceeEEEEEe--ecCCCCccc----CccCC--CCCCCCeecCCCCcccChhHHHHHHHH
Q 015900 145 QGNGK-NNPWGRSFKVKWLRL--NTLPFQKTL----HLKNP--LNDYKPVKISRDCQELPQDIGEALCHL 205 (398)
Q Consensus 145 ~~~g~-~~~wgg~FkVeWL~v--~dLPF~~t~----HLrNp--lNeNKPVkisRDGQEIepeiG~qLc~L 205 (398)
...-. ....--..+|+++.. ..||+..++ ++++. |.+ .-+..+ -++|+++....||+|
T Consensus 81 ~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 81 PTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CccCcCCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 21100 123335789999988 888888765 22232 333 224666 899999999998864
No 5
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=46.91 E-value=31 Score=31.52 Aligned_cols=135 Identities=14% Similarity=0.246 Sum_probs=82.5
Q ss_pred eEEEEEe-------------CChhHHHHHh-hcCeeeecCCC--hHHHHHHhhcCCcEEEEEEecCCCceeEEEEeeccC
Q 015900 72 RYFIIKS-------------LNHQNIQLSI-EKEIWATQVMN--EPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV 135 (398)
Q Consensus 72 RFFIIKS-------------~NeeNI~lSi-k~GIWaTt~~N--ekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i 135 (398)
+|.++|| |+.+++..+- +...|.=- +| -+.+.++-+.++.|++.-|..+.....|+|+++...
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGV-RNyqARN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~ 80 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGV-RNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEA 80 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCC-CCHHHHHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCc-ccHHHHHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeecc
Confidence 4777886 5677776653 34567632 33 333445655566666555766888999999999873
Q ss_pred --CCCC----CccccCCCC-CCCCCCCceeEEEEEe--ecCCCCcccCcc-------CCCCCCCCeecCC-CCcccChhH
Q 015900 136 --GWRR----DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLK-------NPLNDYKPVKISR-DCQELPQDI 198 (398)
Q Consensus 136 --d~~~----~~iW~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~HLr-------NplNeNKPVkisR-DGQEIepei 198 (398)
|... ..+++.... .+.+|. .+.|+-++. ..|+...++... -++.+..-|+.+| --|-|.++.
T Consensus 81 ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~e 159 (176)
T 3eop_A 81 YPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEE 159 (176)
T ss_dssp EECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHH
T ss_pred ccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCceecCHHH
Confidence 4321 345542211 124553 467777665 346666666553 2555555566666 457888999
Q ss_pred HHHHHHHccC
Q 015900 199 GEALCHLLDG 208 (398)
Q Consensus 199 G~qLc~LF~~ 208 (398)
-..||.|-+-
T Consensus 160 w~~I~~l~~~ 169 (176)
T 3eop_A 160 FDFVLSLEEL 169 (176)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 6
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=39.31 E-value=47 Score=29.79 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=76.5
Q ss_pred eEEEEEe----CChhHHHHHhhcCeeeecCCChH--HHHHHhhcCCcEEEEEEecCCCceeEEEEeeccC--CCCC----
Q 015900 72 RYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR---- 139 (398)
Q Consensus 72 RFFIIKS----~NeeNI~lSik~GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~---- 139 (398)
+|.++|| ++.+++.. .....|. .-+|-+ .+.++-+.++.|++.=|-.+.....|+|++++.. |...
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~Wd-GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t~fdp~ 79 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWD-GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPTALDPD 79 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEEC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGCTT
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecC-CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccCCCccccccc
Confidence 4889998 77888877 4457786 334433 4555666665665554655899999999999863 3322
Q ss_pred CccccCCCC-CCCCCCCceeEEEEEe--ecCCCCcccCccCCCCCCCCeecC-C-CCcccChhHHHHHHHH
Q 015900 140 DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKIS-R-DCQELPQDIGEALCHL 205 (398)
Q Consensus 140 ~~iW~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~HLrNplNeNKPVkis-R-DGQEIepeiG~qLc~L 205 (398)
+.+|+.... ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+ | --|.|.++.-..||.|
T Consensus 80 s~YyDpks~~~~prw-~~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l 148 (157)
T 2eve_A 80 SHYHDAKATTEKNPW-SALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILAL 148 (157)
T ss_dssp STTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred CcCcCcccCCCCCCE-EEEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHH
Confidence 245532211 12334 2455555554 344444444432 24444444542 3 3478888888888876
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=32.87 E-value=62 Score=29.38 Aligned_cols=133 Identities=16% Similarity=0.260 Sum_probs=77.1
Q ss_pred CceEEEEEe----CChhHHHHHhhcCeeeecCCChH--HHHHHhhcCCcEEEEEEecCCCceeEEEEeeccC--CCCC--
Q 015900 70 NTRYFIIKS----LNHQNIQLSIEKEIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRR-- 139 (398)
Q Consensus 70 ~aRFFIIKS----~NeeNI~lSik~GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~-- 139 (398)
.-+|.++|| ++.+++.. .....|. .-+|-+ .+.++-+-++.|++.-|-.....+.|+|++++.. +...
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~Wd-GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD~t~fd 95 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWD-GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDDFTALD 95 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECC-CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEECGGGGC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceecc-CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCCccccc
Confidence 456999998 77888877 3446786 334443 4445666666666655665899999999999864 3222
Q ss_pred --CccccCCCC-CCCCCCCceeEEEEEe--ecCCCCcccCccCCCCCCCCeecCC-CCcccChhHHHHHHHHc
Q 015900 140 --DNVWSQGNG-KNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLL 206 (398)
Q Consensus 140 --~~iW~~~~g-~~~~wgg~FkVeWL~v--~dLPF~~t~HLrNplNeNKPVkisR-DGQEIepeiG~qLc~LF 206 (398)
+.+|+.... ...+| ..+.|+-+.. ..|+...++... .+.+..-|+.+| --|-|.++.-..||.|-
T Consensus 96 p~s~YyDpks~~~~prw-~~VdV~~v~~~~~pvtL~eLK~~~-~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~ 166 (172)
T 2ar1_A 96 KTSEYFDPKATKEKNPW-KMVDVKFVARWDTVLTLHELKSRR-ELQKMALFTQRRLSVQPVSASEYAYILRMN 166 (172)
T ss_dssp TTSTTCCTTCCSSCCCC-EEEEEEEEEEEEEEEEHHHHTTCG-GGTTCHHHHCSSCSEEEECHHHHHHHHHHH
T ss_pred ccCcccCcccCCCCCCe-EEEEEEEeeecCCcccHHHHhcCc-ccccCeeeeccCCCceecCHHHHHHHHHhh
Confidence 245543211 11233 2455555543 344444444332 233333344443 34677888888888765
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=23.04 E-value=10 Score=30.71 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=11.8
Q ss_pred CCeecCCCCcccChh
Q 015900 183 KPVKISRDCQELPQD 197 (398)
Q Consensus 183 KPVkisRDGQEIepe 197 (398)
--|++.||||||+-+
T Consensus 8 itikiqrdgqeieid 22 (96)
T 2jvf_A 8 ITIKIQRDGQEIEID 22 (96)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEeeCCeEEEEE
Confidence 347889999998764
No 9
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=22.50 E-value=1.1e+02 Score=27.29 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=73.2
Q ss_pred eEEEEEe----CChhHHHHHhhc-CeeeecCCChH--HHHHHhhcCCcEEEEEEecCCCceeEEEEeeccC--CCCCCcc
Q 015900 72 RYFIIKS----LNHQNIQLSIEK-EIWATQVMNEP--ILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSSV--GWRRDNV 142 (398)
Q Consensus 72 RFFIIKS----~NeeNI~lSik~-GIWaTt~~Nek--kLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~i--d~~~~~i 142 (398)
+|.++|| ++.+++...-.. ..|. .-+|-+ .+.++-+-++.|++.=| |....+.|+|++++.. |....+
T Consensus 3 ~YWL~KSEP~~~Siddl~~~~~~~~~Wd-GVRNyqArN~mr~Mk~GD~~fFYHS-~~~~gIvGi~eVv~e~ypD~t~~d- 79 (155)
T 1zce_A 3 NYWLYKSEPFKWSWEMQKAKGETGEEWT-GVRNYQARNNMRAMKIGDKGFFYHS-NEGLDVVGIVEVCALSHPDSTAEG- 79 (155)
T ss_dssp CEEEEEECTTTSCHHHHHHHGGGCEECC-CCCCHHHHHHHHTCCTTCEEEEEET-TTTCEEEEEEEEEEEEEECTTSTT-
T ss_pred ceEEEEcCCCcCCHHHHHhcCcccceec-CcccHHHHHHHHhccCCCEEEEEEe-CCCCceEEEEEEeeeccCCCCcCC-
Confidence 5899998 677888775443 4586 334443 33445555555555445 5899999999999874 322211
Q ss_pred ccCCCCCCCCCCCceeEEEEEe--ecCCCCcccCccCCCCCCCCeecCC-CCcccChhHHHHHHHHcc
Q 015900 143 WSQGNGKNNPWGRSFKVKWLRL--NTLPFQKTLHLKNPLNDYKPVKISR-DCQELPQDIGEALCHLLD 207 (398)
Q Consensus 143 W~~~~g~~~~wgg~FkVeWL~v--~dLPF~~t~HLrNplNeNKPVkisR-DGQEIepeiG~qLc~LF~ 207 (398)
..+| ..+.|+-+.. ..|+...++.. -.+.+..-|+.+| --|-|.++.-..||.|-.
T Consensus 80 -------~Prw-~~VdV~~v~~~~~pvtL~eLK~~-~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~ 138 (155)
T 1zce_A 80 -------DLKW-DCVDIRAVCDMPQPVSLKDVKAN-PKLEKMSLVTSMRLSVQPVTEEEYLEVCRMGG 138 (155)
T ss_dssp -------CSSC-EEEEEEEEEEEEEEEEHHHHHHC-GGGTTCHHHHCSSCSEEEECHHHHHHHHHHTT
T ss_pred -------CCCe-EEEEEEEccccCCcccHHHHhcC-CCcccCeeeeccCCCceeeCHHHHHHHHHhhC
Confidence 1133 3466666643 34554444432 1233333344444 257788899999998773
No 10
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=13.82 E-value=2.2e+02 Score=24.04 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=28.6
Q ss_pred CChHHHHHHhhcCCcEEEEEEecCCCceeEEEEeecc
Q 015900 98 MNEPILEEAFHNSGKVILIFSVNMSGFFQGYAQMMSS 134 (398)
Q Consensus 98 ~NekkLneAFk~s~~VyLIFSVN~SG~FqGyArM~S~ 134 (398)
-.+..|.+.|...+.|.=+.-+.+++.||||-+|.+.
T Consensus 40 vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 40 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 76 (130)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCH
T ss_pred CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCH
Confidence 3566799999988877555545677899999999865
Done!