Query 015901
Match_columns 398
No_of_seqs 188 out of 1280
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2icu_A Hypothetical protein YE 100.0 1.5E-65 5.1E-70 486.3 13.5 219 1-230 8-229 (229)
2 2f20_A Conserved hypothetical 100.0 2.1E-65 7E-70 488.4 9.9 224 1-231 1-233 (240)
3 2bdv_A Phage-related conserved 100.0 3.6E-63 1.2E-67 470.7 14.2 212 1-231 1-224 (231)
4 1zn6_A Phage-related conserved 100.0 1.8E-58 6.2E-63 437.1 14.2 202 1-215 1-221 (227)
5 2aeg_A Hypothetical protein AG 100.0 3.6E-56 1.2E-60 430.8 17.3 209 1-221 1-245 (268)
6 3p87_G Ribonuclease H2 subunit 48.9 3.3 0.00011 25.7 -0.2 13 238-250 6-18 (23)
7 2b3g_B Cellular tumor antigen 14.8 30 0.001 22.0 -0.3 15 175-190 11-25 (28)
8 4f0q_A Restriction endonucleas 9.8 2E+02 0.0067 29.6 3.6 45 144-188 193-250 (456)
9 1dcu_A Fructose-1,6-bisphospha 9.2 1E+02 0.0035 30.6 1.2 20 167-186 333-352 (357)
10 1gvp_A Gene V protein; DNA-bin 9.0 1E+02 0.0034 24.8 0.9 37 100-144 28-64 (87)
No 1
>2icu_A Hypothetical protein YEDK; structural genomics, PSI, protein structure initiative, southeast collaboratory for structura genomics, secsg, riken; 1.60A {Escherichia coli}
Probab=100.00 E-value=1.5e-65 Score=486.28 Aligned_cols=219 Identities=28% Similarity=0.500 Sum_probs=181.3
Q ss_pred CccccccCCChhHHHHHhhhcCCCCccCCCCCCCCCcccCCCCCceEEEEcCCCCeeEEEEEEeecccccccCCCCCCCC
Q 015901 1 MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAPGWNLPVVRRDDDGEGFVLHCMKWGLIPSFTKKNEKPDFY 80 (398)
Q Consensus 1 MCGRy~l~~~~~~l~~~~~~~~~p~~~~~~~~~~P~yNIaP~~~~PVI~~~~~~~~~~L~~mrWGLvP~W~k~~~k~~~~ 80 (398)
|||||+++.+.++|.+.|+.... ........+.|+|||+|++.+|||+..++ ++++..|+|||+|+|.++ .
T Consensus 8 MCGRy~~~~~~~~l~~~~~~~~~-~~~~~~~~~~p~~ni~P~~~~pvv~~~~~--~~~l~~~rWGl~P~~~k~------~ 78 (229)
T 2icu_A 8 MCGRFAQSQTREDYLALLAEDIE-RDIPYDPEPIGRYNVAPGTKVLLLSERDE--HLHLDPVFWGYAPGWWDK------P 78 (229)
T ss_dssp --CCEEECSCHHHHHTTTCCGGG-BCCCCCCSCCCEEEECTTSEEEEEEEETT--EEEEEEEEBCBCCC----------C
T ss_pred CCCCccCCCCHHHHHHHhccccc-cccccccccCccccCCCCCeEEEEEecCC--ceEEEEeEEeccCCcccc------c
Confidence 99999999999999877754210 00001234569999999999999997654 588999999999999874 3
Q ss_pred ceeeeeecCcccchhhhhccCCCeEEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCCCceeEEEEEEec
Q 015901 81 KMFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSEGEILYTFTILTT 160 (398)
Q Consensus 81 ~tiNAR~ETL~ekp~Fr~a~~~rRCLVPasGFYEW~~~~~~KqPy~I~~kdg~pl~~AGLyd~w~~~~Ge~l~SFtIITt 160 (398)
.+||||+|||.+|++|+.+++++||||||+|||||+..+++||||||+++|+++|+|||||+.|.+ +|+.+.||||||+
T Consensus 79 ~~~NAR~Et~~~kp~fr~~~~~~RClVPa~gfyEw~~~~~~k~p~~i~~~d~~~~~~AGlw~~w~~-~g~~~~sftilTt 157 (229)
T 2icu_A 79 PLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFE-RGDEAEGFLIVTA 157 (229)
T ss_dssp CBCEEEHHHHTTCTTTHHHHHHCEEEEEESEEEEEC------CEEEEEETTCCCEEEEEEECSCGG-GCCSSBCEEEEEE
T ss_pred cceeechhhccCchhHHhhhcCCcEEEEcceEEEcccCCCCceEEEEEecCCCcEEEEEeeecccC-CCCcCceEEEEee
Confidence 699999999999999999999999999999999999888899999999999999999999999876 5777789999999
Q ss_pred CCCchhhcccCCceEecCChhhHHhccCCCCc-hHHHhhc--CCCCCCCeEEEECCCCCCCCCCCcccccccc
Q 015901 161 SSSAALQWLHDRMPVILGDKESSDAWLNGSSS-SKYDTIL--KPYEESDLVWYPVTPAMGKLSFDGPECIKEI 230 (398)
Q Consensus 161 ~An~~ls~IHdRMPVIL~~~e~~~~WLdp~~~-~~l~~LL--kp~~~~~L~~ypVs~~Vn~~~n~~p~~i~pi 230 (398)
+||+.|++|||||||||. +++++.||+++.. .++..|| .+++.+.|++|||++.|||++|++|+||+|+
T Consensus 158 ~an~~~~~iH~RmPviL~-~~~~~~WL~~~~~~~~a~~ll~~~~~p~~~l~~~pVs~~Vn~~~n~~p~li~p~ 229 (229)
T 2icu_A 158 AADQGLVDIHDRRPLVLS-PEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPV 229 (229)
T ss_dssp ECCGGGGGTCSEEECEEC-HHHHHHHHCTTCCHHHHHHHHHHHBCCGGGEEEEECCGGGGSTTCCCGGGGSCC
T ss_pred cCchhhhcccCceeEecC-HHHHHHhcCCCCCHHHHHHHHHhcCCCcccEEEEECCCCCCCcCCCChhhhcCC
Confidence 999999999999999997 7999999999754 4567777 5778889999999999999999999999985
No 2
>2f20_A Conserved hypothetical protein, with conserved domain; Q8A8E9_bactin, NESG, BTR8, structural genomics, PSI; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.303.1.1
Probab=100.00 E-value=2.1e-65 Score=488.41 Aligned_cols=224 Identities=28% Similarity=0.548 Sum_probs=196.3
Q ss_pred CccccccCCChhHHHHHhhhcCCCCccCCCCCCCCCcccCC--CCCceEEEEcCCCCeeEEEEEEeecccccccCCCC--
Q 015901 1 MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAP--GWNLPVVRRDDDGEGFVLHCMKWGLIPSFTKKNEK-- 76 (398)
Q Consensus 1 MCGRy~l~~~~~~l~~~~~~~~~p~~~~~~~~~~P~yNIaP--~~~~PVI~~~~~~~~~~L~~mrWGLvP~W~k~~~k-- 76 (398)
|||||+++.++++|++.|+.... ......+.+.|+|||+| ++.+|||+.+ +++..|+|||+|+|+++...
T Consensus 1 MCGRy~~~~~~~~l~~~f~~~~~-~~~~~~~~~~p~~ni~P~~~~~~pvv~~~-----~~l~~~rWGlvP~w~k~~~~~~ 74 (240)
T 2f20_A 1 MCFHNSMSAKAIKVAARYGRQSD-VVEIYQSILDEQYHVNAFTFPRYPIITSS-----DEVQVFNWGLIPFWVRSEEDAT 74 (240)
T ss_dssp -CCEEEECSCHHHHHHHTTCBCH-HHHHTHHHHTTEEEEEGGGCCEEEEBCSS-----SBCEEEEESCCCTTCCCHHHHH
T ss_pred CCCCccCCCCHHHHHHHhccccc-cccccccccCCcccCCCCCCCEEEEEECC-----CEEEEeEeccccCccccccccc
Confidence 99999999999999998864311 00000013679999999 9999999853 67899999999999985310
Q ss_pred CCCCceeeeeecCcccchhhhhccCCCeEEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccccCCC-CceeEEE
Q 015901 77 PDFYKMFNARSESVTEKASFRRLLPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSE-GEILYTF 155 (398)
Q Consensus 77 ~~~~~tiNAR~ETL~ekp~Fr~a~~~rRCLVPasGFYEW~~~~~~KqPy~I~~kdg~pl~~AGLyd~w~~~~-Ge~l~SF 155 (398)
...+.|||||+|||.+|++|+.+++++||||||+|||||+..+++||||||+++||++|+|||||+.|.+++ |+.+.||
T Consensus 75 ~~~~~~~NAR~Etl~~kp~fr~~~~~~RClVPa~gfyEw~~~~g~k~p~~i~~~d~~~~~~AGlw~~w~~~~~g~~~~sf 154 (240)
T 2f20_A 75 EIRKMTLNARADTIFEKPSFREPIMKKRCIVPSTGYFEWRHEGANKIPYYIYVKDEPIFSMAGIYDRWLDKDTGEEHETF 154 (240)
T ss_dssp HHGGGCSEEEGGGTTTCTTTTTHHHHCEEEEEESEEEEEEEETTEEEEEEEEETTCSSEEEEEEEEEEECTTTCCEEEEE
T ss_pred ccCCcceEecccccccchhHHHHhhCCeEEEEeceeEEcccCCCCceEEEEEcCCCCcEEEEEEeeeccCCCCCcccceE
Confidence 023679999999999999999999999999999999999988889999999999999999999999999877 8889999
Q ss_pred EEEecCCCchhhcccC---CceEecCChhhHHhccCCCCc-hHHHhhcCCCCCCCeEEEECCCCCCCCCCCccccccccc
Q 015901 156 TILTTSSSAALQWLHD---RMPVILGDKESSDAWLNGSSS-SKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIKEIP 231 (398)
Q Consensus 156 tIITt~An~~ls~IHd---RMPVIL~~~e~~~~WLdp~~~-~~l~~LLkp~~~~~L~~ypVs~~Vn~~~n~~p~~i~pi~ 231 (398)
||||++||+.|++||+ ||||||. +++++.||++... .++..||+|++.+.|.+|||++.|||++|++|+||+|+.
T Consensus 155 tiiTt~an~~~~~iH~~~KRmPviL~-~e~~~~WL~~~~~~~~~~~ll~p~p~~~l~~~pVs~~Vn~~~n~~p~~i~p~~ 233 (240)
T 2f20_A 155 SIITTDTNSLTDYIDNTKHRMPAILT-QEEEEKWLNPSLSKAEIASLLKPFDTEKMDAYVIRNDFLKKSPNDPTIVQRAL 233 (240)
T ss_dssp EEEEEECCHHHHHHSTTTCEEECEEC-GGGHHHHTCTTCCHHHHHHTCCCCCGGGEEEEEBCGGGGGSCTTCGGGGCBCC
T ss_pred EEEEccCChhhhhccCCcceeEEEeC-HHHHHHhcCCCCcHHHHHHHcccCCCCcEEEEECCCccCCcCCCChhHhchhh
Confidence 9999999999999999 9999997 7999999999875 468899999999999999999999999999999999996
No 3
>2bdv_A Phage-related conserved hypothetical protein, BB2; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.20A {Bordetella bronchiseptica} SCOP: d.303.1.1
Probab=100.00 E-value=3.6e-63 Score=470.67 Aligned_cols=212 Identities=28% Similarity=0.522 Sum_probs=179.7
Q ss_pred CccccccCCChhHHHHHhhhcCCCCccCCCCCCCCCcccCCCCCceEEEEcCCCCeeE-EEEEEeecccccccCCCCCCC
Q 015901 1 MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAPGWNLPVVRRDDDGEGFV-LHCMKWGLIPSFTKKNEKPDF 79 (398)
Q Consensus 1 MCGRy~l~~~~~~l~~~~~~~~~p~~~~~~~~~~P~yNIaP~~~~PVI~~~~~~~~~~-L~~mrWGLvP~W~k~~~k~~~ 79 (398)
|||||+++.++++|.+.|+.... ... ....+ |+|||+|++.+|||+.+++ +++ +..|+|||+| |+. .
T Consensus 1 MCGRy~~~~~~~~l~~~~~~~~~-~~~-~~~~~-p~~ni~P~~~~pvv~~~~~--~~~~l~~~rWGl~P---k~~----~ 68 (231)
T 2bdv_A 1 MCGRIAQKSAPEDYVEILWPNAR-LIF-DDVAG-PRYNIPPGTRPLTMHRLVD--QAEALARLPWGYKP---HGS----S 68 (231)
T ss_dssp -CCCEEECSCHHHHHHHHSSSCC-C-----CCC-CEEEECTTSCCEEEECTTT--TCCEEEECCBCBCC---TTS----C
T ss_pred CCCCccCCCCHHHHHHHhccccc-ccc-CccCC-CCCccCCCCcEEEEEeCCC--ceEEEEEEEEcccc---CCC----C
Confidence 99999999999999999875311 000 11236 9999999999999997543 477 9999999999 332 4
Q ss_pred CceeeeeecCcccchh-hhhccCCCeEEEeecceeeee---cCCCC-cccEEEEecCCCcEEEEEeeccccCC-CCceeE
Q 015901 80 YKMFNARSESVTEKAS-FRRLLPKSRCLAAVEGFYEWK---KDGSK-KQPYYVHFKDGRPLVFAALYDTWQSS-EGEILY 153 (398)
Q Consensus 80 ~~tiNAR~ETL~ekp~-Fr~a~~~rRCLVPasGFYEW~---~~~~~-KqPy~I~~kdg~pl~~AGLyd~w~~~-~Ge~l~ 153 (398)
+.+||||+|||.+||+ |+.+++++||||||+|||||+ +.+++ ||||||++ |++|+|||||+ |.++ +|+.+.
T Consensus 69 ~~~iNAR~Et~~~kp~~Fr~~~~~~RClVPa~gfyEW~~~~~~~g~~k~p~~i~~--~~~~~~AGlw~-w~~~~~g~~~~ 145 (231)
T 2bdv_A 69 FFMINAKLETIERHGWPWKLMIGTGRILVPADGWYEWKALDSGPKPAKQPYYIHG--DAPLLFAGLSA-WRRGAELDEAH 145 (231)
T ss_dssp CCBCEEEHHHHHTTCTTGGGTTTTCEEEEEEEEEEEEEECSCSSSCCEEEEEEEE--EEEEEEEEEEC-CCTTCCSSGGG
T ss_pred CcceEeehhhhccCchhhhHHhhcCeEEEEeccEEeccccccCCCCcceEEEEEC--CCceEEEEEeE-ecCCCCCceee
Confidence 6899999999999999 999999999999999999999 67778 99999999 78999999999 9986 788889
Q ss_pred EEEEEecCCCchhhcccCCceEecCChhhHHhccCCCCc-----hHHHhhcCCCCCCCeEEEECCCCCCCCCCCcccccc
Q 015901 154 TFTILTTSSSAALQWLHDRMPVILGDKESSDAWLNGSSS-----SKYDTILKPYEESDLVWYPVTPAMGKLSFDGPECIK 228 (398)
Q Consensus 154 SFtIITt~An~~ls~IHdRMPVIL~~~e~~~~WLdp~~~-----~~l~~LLkp~~~~~L~~ypVs~~Vn~~~n~~p~~i~ 228 (398)
|||||||+||+.|++|||||||||. +++++.||++... .++ .||+| .+.|.+|||++.|||++|++|+||+
T Consensus 146 sftiiTt~an~~~~~iH~RmPviL~-~e~~~~WL~~~~~~~~~~~~~-~ll~p--~~~l~~~pVs~~Vn~~~n~~p~li~ 221 (231)
T 2bdv_A 146 GFAIVTNDALGGMVDVHDRRPVALP-PELAREWVDPATPVARAKEIL-RAGLP--ETAFSWYPVRQEVGSSKYQLPDAVD 221 (231)
T ss_dssp CEEEEECGGGCCSSCTTSCCBCBCC-HHHHHHHHCTTSCHHHHHHHH-TCCCC--GGGCEEEECCSCSCSBTTBCCC---
T ss_pred eEEEEecccChhhhcccCceeeecC-HHHHHHhcCCCCCCcchhhHH-HhcCC--cccEEEEECCCcCCCcCCCChHHhh
Confidence 9999999999999999999999997 7999999999765 447 89999 6789999999999999999999999
Q ss_pred ccc
Q 015901 229 EIP 231 (398)
Q Consensus 229 pi~ 231 (398)
|+.
T Consensus 222 p~~ 224 (231)
T 2bdv_A 222 PLL 224 (231)
T ss_dssp ---
T ss_pred hhh
Confidence 996
No 4
>1zn6_A Phage-related conserved hypothetical protein; novel, structural genomics, PSI; 1.80A {Bordetella bronchiseptica} SCOP: d.303.1.1
Probab=100.00 E-value=1.8e-58 Score=437.11 Aligned_cols=202 Identities=25% Similarity=0.415 Sum_probs=175.4
Q ss_pred CccccccCCChhHHHHHhhhcCCCCccCCCCCCCCCcccCCCCCceEEEEcCC-------CCeeEEEEEEeecccccccC
Q 015901 1 MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAPGWNLPVVRRDDD-------GEGFVLHCMKWGLIPSFTKK 73 (398)
Q Consensus 1 MCGRy~l~~~~~~l~~~~~~~~~p~~~~~~~~~~P~yNIaP~~~~PVI~~~~~-------~~~~~L~~mrWGLvP~W~k~ 73 (398)
|||||+++.+.++|.+.|+... .. .|+|||+|++.+|||+...+ ..++++..|+|||+|+|+++
T Consensus 1 MCgRy~~~~~~~~l~~~~~~~~--------~~-~p~~ni~P~~~~pvv~~~~~~~~~~~~~~~~~l~~~rWGl~P~w~k~ 71 (227)
T 1zn6_A 1 MCSHYQALKDQERMRKYFAAHP--------SA-EVPADMWPRYMGAFIRRPLEWDSGDEAVPEREAATGRWGMIPPGTRP 71 (227)
T ss_dssp -CCCEEECCCHHHHHHHHSEEC--------CS-CCCSEECTTSEEEEBCCCC--------CCSEECEEEEESCCCTTCCG
T ss_pred CCCCccCCCCHHHHHHHhCcCc--------CC-CCCCccCCCCcEeEEEccCccccccccCCceEEEEEEECCccccccc
Confidence 9999999999999999987531 11 48999999999999986531 13588999999999999985
Q ss_pred CCC--CCCCceeeeeecCcccchhhhhccCC-CeEEEeecceee--eecCCCCcccEEEEecCCCcEEEEEeeccccCCC
Q 015901 74 NEK--PDFYKMFNARSESVTEKASFRRLLPK-SRCLAAVEGFYE--WKKDGSKKQPYYVHFKDGRPLVFAALYDTWQSSE 148 (398)
Q Consensus 74 ~~k--~~~~~tiNAR~ETL~ekp~Fr~a~~~-rRCLVPasGFYE--W~~~~~~KqPy~I~~kdg~pl~~AGLyd~w~~~~ 148 (398)
... +..+.|||||+|||.+|++|+.++++ +||||||+|||| |.. ++||||||+++||++|+|||||+.|.+++
T Consensus 72 ~~~~~~~~~~~iNAR~Etv~~kp~Fr~a~~~~~RClVPa~gFyE~~w~~--g~k~p~~i~~~d~~~l~~AGLw~~w~~~~ 149 (227)
T 1zn6_A 72 EKLAEASKKNTSNARSETAHQLWTFRNAWAKAQHCIIPADAIYEPDWRS--GKAVPTRFTRADGAPLGIAGLWDRYRNAA 149 (227)
T ss_dssp GGHHHHHHSCCSEEETTTTTTSTTTHHHHHTTCEEEEEEEEEEEEECTT--SSCEEEEEEETTSCCEEEEEEEEEEECTT
T ss_pred cccccccCCcceEecccccccCchHHHHHhhCceEEEEeceeEeecccC--CCccceEEecCCCCcEEEEEEeeeccCCC
Confidence 311 00357999999999999999999986 999999999999 754 58999999999999999999999999888
Q ss_pred CceeEEEEEEecCCCc--hhhcccC-----CceEecCChhhHHhccCCCCchHHHhhcCCCCCCCeEEEECCCC
Q 015901 149 GEILYTFTILTTSSSA--ALQWLHD-----RMPVILGDKESSDAWLNGSSSSKYDTILKPYEESDLVWYPVTPA 215 (398)
Q Consensus 149 Ge~l~SFtIITt~An~--~ls~IHd-----RMPVIL~~~e~~~~WLdp~~~~~l~~LLkp~~~~~L~~ypVs~~ 215 (398)
|+.+.|||||||+||. .|++||+ ||||||. +++++.||++... ++..||+|++.+.|.+|||+.+
T Consensus 150 g~~~~sftiiTt~an~~~~~~~iH~p~~~~RmPviL~-~e~~~~WL~~~~~-~~~~ll~p~p~~~l~~~pV~~~ 221 (227)
T 1zn6_A 150 GEWIDSYTMLTINADDDPLFRDYHQAGKEKRMVVILP-DGAYGDWLTAPAT-DTRDFLLPYPADRLVAAAVKLE 221 (227)
T ss_dssp SCEEEEEEEEEEECTTCTTGGGCSCTTSCCEEECBCC-GGGHHHHHHCCGG-GHHHHCCCCCGGGEEEEECCC-
T ss_pred CCeeeEEEEEeccCCCCchhhhccCCCCCceeeEEeC-HHHHHHHcCCChH-HHHHHcccCCccccEEEECCHH
Confidence 9989999999999997 9999998 9999998 7999999999764 5889999999999999999875
No 5
>2aeg_A Hypothetical protein AGR_PAT_140; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Agrobacterium tumefaciens str} SCOP: d.303.1.1
Probab=100.00 E-value=3.6e-56 Score=430.83 Aligned_cols=209 Identities=22% Similarity=0.393 Sum_probs=177.3
Q ss_pred CccccccCCChhHHHHHhhhcCCCCccCCCCCCCCCcccCCCCCceEEEEcCCCCeeEEEEEEeecccc-cccCCC----
Q 015901 1 MCGRARCTLRADDLPRACHRTGSPARTLNMDRYRPSYNVAPGWNLPVVRRDDDGEGFVLHCMKWGLIPS-FTKKNE---- 75 (398)
Q Consensus 1 MCGRy~l~~~~~~l~~~~~~~~~p~~~~~~~~~~P~yNIaP~~~~PVI~~~~~~~~~~L~~mrWGLvP~-W~k~~~---- 75 (398)
|||||+++.+ ++|.++| ... ....++.|+|||+|++.+|||+..+++ .+++..|+|||+|+ |++...
T Consensus 1 MCGRy~~~~~-~~l~~~~-~~~-----~~~~~~~p~ynIaP~~~~pvv~~~~~g-~~~l~~~rWGl~P~~w~k~~~~NAR 72 (268)
T 2aeg_A 1 MCNLYRMEDK-DWVSKWA-QDA-----ESLINLMPAYQMNPDQMGPIVRNTADG-KKQLVHARWGLPSPIFVQKKAAEAR 72 (268)
T ss_dssp -CCCEEECCS-SCHHHHS-SSS-----EECSCCCSCEEECTTSEEEEEEECTTS-CEEEEEEEECBCCCHHHHHHHHHHH
T ss_pred CCCCcCCCCh-HHHHHHH-hcc-----cccccCCCCCccCCCCCEeEEEecCCC-ceEEEEEEEeecCcccccccchhhh
Confidence 9999999999 8898888 321 112357899999999999999976532 58899999999999 986211
Q ss_pred ------C------------CCCCceeeeeecCcccchhhhhcc-CCCeEEEeecceeeeec---CCCCccc-EEEEecCC
Q 015901 76 ------K------------PDFYKMFNARSESVTEKASFRRLL-PKSRCLAAVEGFYEWKK---DGSKKQP-YYVHFKDG 132 (398)
Q Consensus 76 ------k------------~~~~~tiNAR~ETL~ekp~Fr~a~-~~rRCLVPasGFYEW~~---~~~~KqP-y~I~~kdg 132 (398)
+ ...+.|||||+ .++++|+.++ +++||||||+|||||.. .+++||| |||+++|+
T Consensus 73 ~Et~~~k~~~~~~~~~~~~~~~~~~~NAR~---~~kp~fr~a~~~~~RCLVPa~GFyEW~~~~~~~g~K~P~~~i~~~d~ 149 (268)
T 2aeg_A 73 ADKLKAKGKAFDINELIRMEPDRGVTNVRK---LNLPHWTRWFGVEHRCLVPVTSFAEPDPASKQEGGNVPNAWFARDEA 149 (268)
T ss_dssp HHHHHTTTCCCCHHHHHHHCCCCCBCEECC---TTCGGGGGGCSGGGEEEEEESEEEEECTTSCCTTSCCCEEEEESSTT
T ss_pred hhhhhccccccccchhhccccCCcceEEec---CCChHHHHHHhhCCeEEEEccEEEeecCccCCCCCcCccEEEEecCC
Confidence 0 12457999999 7899999999 69999999999999987 6778999 99999999
Q ss_pred C-cEEEEEeec-cccCC----CCc-eeEEEEEEecCCCchhhcccC-CceEecCChhhHHhccCCCCchHHHhhcCCCCC
Q 015901 133 R-PLVFAALYD-TWQSS----EGE-ILYTFTILTTSSSAALQWLHD-RMPVILGDKESSDAWLNGSSSSKYDTILKPYEE 204 (398)
Q Consensus 133 ~-pl~~AGLyd-~w~~~----~Ge-~l~SFtIITt~An~~ls~IHd-RMPVIL~~~e~~~~WLdp~~~~~l~~LLkp~~~ 204 (398)
+ +|+|||||+ .|.++ +|+ .+.|||||||+||+.|++||| ||||||..+++++.||+++. .++..||+|++.
T Consensus 150 ~pl~~~AGLw~~~w~~~~~~~~g~~~~~sftIiTt~an~~~~~iH~kRMPVIL~~~e~~~~WL~~~~-~~~~~Ll~p~p~ 228 (268)
T 2aeg_A 150 KSLMFFAGIHVPQWKSVRKVRDGLTTDDLYGFLTTDPNDLVKPIHEKAMPVLLLTREETEIWMRAPW-DEAKHLARPLPN 228 (268)
T ss_dssp CCCEEEEEEEEEEEEECSSGGGCSEEEEEEEEEEECCCTTTTTTCSSCEECEECSHHHHHHHHHSCH-HHHGGGCSCCCT
T ss_pred CceEEEEEEeeccccccccccccccccceEEEEeCCchHhhhhhCCCceeEEeCCHHHHHHHcCCCh-HHHHHHcCCCCC
Confidence 8 699999999 99875 466 489999999999999999999 99999932799999999853 468899999999
Q ss_pred CCeEEEECCCCCCCCCC
Q 015901 205 SDLVWYPVTPAMGKLSF 221 (398)
Q Consensus 205 ~~L~~ypVs~~Vn~~~n 221 (398)
+.|++|||++.||++..
T Consensus 229 ~~l~~~pV~~~v~~~~~ 245 (268)
T 2aeg_A 229 DALIILSREPYGSSIVS 245 (268)
T ss_dssp TSCEEEEEECTTCCCC-
T ss_pred ccEEEEECCccCCCCcc
Confidence 99999999999999876
No 6
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=48.90 E-value=3.3 Score=25.66 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=10.3
Q ss_pred Ccccccccccchh
Q 015901 238 NPISNFFLKKEIK 250 (398)
Q Consensus 238 ~~I~~FF~~k~~~ 250 (398)
++|++||..++++
T Consensus 6 KSI~sFF~~k~k~ 18 (23)
T 3p87_G 6 KSIDTFFGVKNKK 18 (26)
T ss_pred hhHHHHhcccccc
Confidence 4799999987653
No 7
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=14.80 E-value=30 Score=21.95 Aligned_cols=15 Identities=13% Similarity=0.632 Sum_probs=11.1
Q ss_pred EecCChhhHHhccCCC
Q 015901 175 VILGDKESSDAWLNGS 190 (398)
Q Consensus 175 VIL~~~e~~~~WLdp~ 190 (398)
++|. +++++.||..+
T Consensus 11 lmls-pddi~qw~s~d 25 (28)
T 2b3g_B 11 LMLS-PDDIEQWFTED 25 (28)
T ss_dssp GGCC-HHHHHHHHHC-
T ss_pred hhcC-hHHHHHHhhcC
Confidence 4676 78999999654
No 8
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=9.78 E-value=2e+02 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.418 Sum_probs=28.0
Q ss_pred ccCCCCc----eeEEEEEEecCCCc--hhhcccCC-ceEec-----C-ChhhHHhccC
Q 015901 144 WQSSEGE----ILYTFTILTTSSSA--ALQWLHDR-MPVIL-----G-DKESSDAWLN 188 (398)
Q Consensus 144 w~~~~Ge----~l~SFtIITt~An~--~ls~IHdR-MPVIL-----~-~~e~~~~WLd 188 (398)
|...+|+ ....||||.+.-.+ ...|||+| .+-+. . .+..|..|+.
T Consensus 193 ~~~~nG~rFqNY~a~FTIL~~~ei~~v~r~WI~drr~~~l~~~~~~~~APkaWk~WV~ 250 (456)
T 4f0q_A 193 RDPETGRSFPNLSLDLAVVSGGEIDGVDFRWIDDRRNAALAAGETLRHAPESWIRWVR 250 (456)
T ss_dssp ECTTTCCEEEEEEEEEEEBCCSSSSEEETHHHHHHTCTTSCGGGSCTTSCHHHHHHHH
T ss_pred EecCCCcEeeccEEEEEEecccccccccHHHHHHhhhccccchhhhhhCcHHHHHHHH
Confidence 4445565 34679999753333 56799984 54322 1 2688999983
No 9
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox regulation, thioredoxin, allostery, hydrolase; 2.20A {Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Probab=9.21 E-value=1e+02 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=15.9
Q ss_pred hcccCCceEecCChhhHHhc
Q 015901 167 QWLHDRMPVILGDKESSDAW 186 (398)
Q Consensus 167 s~IHdRMPVIL~~~e~~~~W 186 (398)
..||.|.||+|...++++..
T Consensus 333 ~~lHqR~p~~~GS~~eV~~~ 352 (357)
T 1dcu_A 333 TEIHQRVPLYIGSTEEVEKV 352 (357)
T ss_dssp CSTTCBCCEEEECHHHHHHH
T ss_pred CcccccCCeEEeCHHHHHHH
Confidence 45899999999877777643
No 10
>1gvp_A Gene V protein; DNA-binding protein, DNA replication; 1.60A {Escherichia coli} SCOP: b.40.4.7 PDB: 1vqb_A 2gn5_A 1vqj_A 1vqi_A 1vqg_A 1vqh_A 1vqf_A 1yhb_A 1yha_A 2gva_A 2gvb_A 1vqd_A 1vqe_A 1gkh_A 1vqc_A 1ae2_A 1vqa_A 1ae3_A
Probab=9.03 E-value=1e+02 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.8
Q ss_pred cCCCeEEEeecceeeeecCCCCcccEEEEecCCCcEEEEEeeccc
Q 015901 100 LPKSRCLAAVEGFYEWKKDGSKKQPYYVHFKDGRPLVFAALYDTW 144 (398)
Q Consensus 100 ~~~rRCLVPasGFYEW~~~~~~KqPy~I~~kdg~pl~~AGLyd~w 144 (398)
++.++|.|-..|=| ..+|-|...+|++-+-||.|...
T Consensus 28 ~reQ~a~v~lGG~f--------p~~~~v~Le~gQppY~~G~Y~ih 64 (87)
T 1gvp_A 28 LNEQLCYVDLGNEY--------PVLVKITLDEGQPAYAPGLYTVH 64 (87)
T ss_dssp EEEEEEEECCSSSS--------CEEEEEECCTTCCCCCSEEEEEC
T ss_pred EEEEEEEEEcCCCc--------cEEEEEecCCCCCCCCCceEEEc
Confidence 56778877766632 35688899999999999999864
Done!