BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015902
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
 pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
           Acetylglucosaminyltransferase: A Metal-Ion Independent
           Gt-A Glycosyltransferase
          Length = 391

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 32/204 (15%)

Query: 89  ESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGP---------------------TM 127
           E L R L+A+Y P+N Y +H+D +A  E  L   +G                      T 
Sbjct: 97  EMLDRLLRAIYMPQNFYCIHVDRKAE-ESFLAAVQGIASCFDNVFVASQLESVVYASWTR 155

Query: 128 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWK 187
           V   L+    L++   +W + INLS  D+P+ T  +++  L       N          +
Sbjct: 156 VKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKE 215

Query: 188 EYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDN 247
           E  + +  ++D  L     + +   P     P    LF+GSA+ +++R ++ + L   +N
Sbjct: 216 ERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-EN 267

Query: 248 LPRIVLMYYANFLSSPEGYFHTVI 271
           + +  LM +A    SP+ +    I
Sbjct: 268 IQK--LMEWAQDTYSPDEFLWATI 289


>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
           B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
 pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
           B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
 pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
 pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
           B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
           Complex With Galb1,3galnac
          Length = 391

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 32/204 (15%)

Query: 89  ESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGP---------------------TM 127
           E L R L+A+Y P+N Y +H+D +A  E  L   +G                      T 
Sbjct: 97  EMLDRLLRAIYMPQNFYCIHVDRKAE-ESFLAAVQGIASCFDNVFVASQLESVVYASWTR 155

Query: 128 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWK 187
           V   L+    L++   +W + INL   D+P+ T  +++  L       N          +
Sbjct: 156 VKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKE 215

Query: 188 EYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDN 247
           E  + +  ++D  L     + +   P     P    LF+GSA+ +++R ++ + L   +N
Sbjct: 216 ERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-EN 267

Query: 248 LPRIVLMYYANFLSSPEGYFHTVI 271
           + +  LM +A    SP+ +    I
Sbjct: 268 IQK--LMEWAQDTYSPDEFLWATI 289


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,219
Number of Sequences: 62578
Number of extensions: 511588
Number of successful extensions: 1022
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)