Query 015902
Match_columns 398
No_of_seqs 264 out of 821
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 9E-109 2E-113 837.8 34.9 380 13-398 5-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 2.7E-59 5.9E-64 480.6 19.1 310 73-396 100-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 6.9E-49 1.5E-53 373.4 16.3 218 77-311 1-244 (244)
4 TIGR03469 HonB hopene-associat 78.9 61 0.0013 33.0 14.5 96 73-169 38-159 (384)
5 TIGR03111 glyc2_xrt_Gpos1 puta 70.5 1.1E+02 0.0024 31.7 14.2 89 73-169 47-157 (439)
6 cd06439 CESA_like_1 CESA_like_ 67.0 56 0.0012 30.2 10.1 91 72-170 26-133 (251)
7 PF07521 RMMBL: RNA-metabolisi 66.1 4 8.6E-05 28.7 1.6 28 81-110 14-41 (43)
8 cd02525 Succinoglycan_BP_ExoA 64.4 52 0.0011 30.0 9.2 85 76-168 1-103 (249)
9 TIGR03472 HpnI hopanoid biosyn 57.8 2.2E+02 0.0047 28.8 13.5 87 74-169 40-149 (373)
10 PRK11204 N-glycosyltransferase 57.4 2.2E+02 0.0049 28.9 14.1 90 73-169 52-160 (420)
11 PF13641 Glyco_tranf_2_3: Glyc 57.0 39 0.00085 30.7 7.0 100 75-179 1-120 (228)
12 cd06421 CESA_CelA_like CESA_Ce 54.4 1.2E+02 0.0026 27.3 9.8 87 75-170 1-108 (234)
13 cd06434 GT2_HAS Hyaluronan syn 51.2 99 0.0021 28.1 8.7 79 77-160 2-93 (235)
14 PRK14716 bacteriophage N4 adso 50.2 1.4E+02 0.003 32.1 10.7 89 72-161 63-175 (504)
15 cd04184 GT2_RfbC_Mx_like Myxoc 50.1 1.4E+02 0.003 26.2 9.3 88 75-168 1-108 (202)
16 PRK10063 putative glycosyl tra 47.5 2.5E+02 0.0054 26.7 11.1 85 75-168 1-106 (248)
17 PTZ00260 dolichyl-phosphate be 47.3 1.1E+02 0.0023 30.7 8.9 44 71-115 66-119 (333)
18 cd02526 GT2_RfbF_like RfbF is 45.9 1.3E+02 0.0027 27.4 8.5 83 80-167 2-96 (237)
19 cd04179 DPM_DPG-synthase_like 45.8 93 0.002 26.9 7.3 93 80-180 2-114 (185)
20 cd02511 Beta4Glucosyltransfera 44.9 1.7E+02 0.0036 27.1 9.3 86 76-170 1-98 (229)
21 PF07747 MTH865: MTH865-like f 43.5 11 0.00024 30.1 0.9 19 151-169 11-29 (75)
22 PF12273 RCR: Chitin synthesis 42.0 19 0.00042 31.2 2.2 18 17-34 1-18 (130)
23 cd06438 EpsO_like EpsO protein 41.9 2E+02 0.0043 25.3 8.9 86 80-168 2-103 (183)
24 cd06420 GT2_Chondriotin_Pol_N 41.2 2.3E+02 0.005 24.3 9.2 81 80-169 2-102 (182)
25 cd06437 CESA_CaSu_A2 Cellulose 41.2 1.7E+02 0.0036 26.8 8.6 39 75-115 1-43 (232)
26 cd06423 CESA_like CESA_like is 40.7 1.2E+02 0.0025 25.1 6.9 79 80-167 2-99 (180)
27 cd04186 GT_2_like_c Subfamily 39.3 1.5E+02 0.0033 24.6 7.5 80 80-168 2-96 (166)
28 cd00761 Glyco_tranf_GTA_type G 39.0 2E+02 0.0043 22.9 8.0 75 80-160 2-93 (156)
29 cd02520 Glucosylceramide_synth 38.4 2.2E+02 0.0049 25.3 8.8 87 75-169 1-109 (196)
30 COG4746 Uncharacterized protei 36.9 20 0.00043 28.7 1.3 19 151-169 16-34 (80)
31 PLN02726 dolichyl-phosphate be 36.4 3.5E+02 0.0076 25.0 10.5 87 73-169 7-116 (243)
32 cd06433 GT_2_WfgS_like WfgS an 34.8 2.4E+02 0.0051 24.3 8.2 76 79-160 2-91 (202)
33 cd04185 GT_2_like_b Subfamily 34.5 2.3E+02 0.005 25.0 8.2 73 80-158 2-93 (202)
34 PRK10714 undecaprenyl phosphat 33.6 3.4E+02 0.0073 27.0 9.9 91 73-171 4-115 (325)
35 PRK14583 hmsR N-glycosyltransf 33.4 3.3E+02 0.0071 28.3 10.1 77 74-159 74-170 (444)
36 PF00535 Glycos_transf_2: Glyc 32.7 1.3E+02 0.0029 24.8 6.0 84 80-170 3-105 (169)
37 cd06427 CESA_like_2 CESA_like_ 31.4 3.5E+02 0.0076 24.9 9.2 89 75-169 1-110 (241)
38 cd04187 DPM1_like_bac Bacteria 28.5 3.2E+02 0.007 23.6 8.0 19 226-244 147-165 (181)
39 PF08660 Alg14: Oligosaccharid 27.3 2.6E+02 0.0056 25.4 7.2 100 80-181 3-130 (170)
40 cd02522 GT_2_like_a GT_2_like_ 25.3 3.3E+02 0.0072 24.2 7.7 81 78-168 2-94 (221)
41 PRK07132 DNA polymerase III su 24.0 5.3E+02 0.012 25.7 9.3 26 73-98 15-42 (299)
42 TIGR03030 CelA cellulose synth 23.3 7.7E+02 0.017 27.5 11.4 101 73-178 129-262 (713)
43 PRK05917 DNA polymerase III su 23.2 2.6E+02 0.0057 27.9 6.9 14 73-86 16-29 (290)
44 TIGR01556 rhamnosyltran L-rham 22.9 4.7E+02 0.01 24.7 8.6 72 84-158 3-87 (281)
45 COG1954 GlpP Glycerol-3-phosph 22.4 1.3E+02 0.0029 27.9 4.3 38 73-113 22-59 (181)
46 PRK05454 glucosyltransferase M 22.0 1.1E+03 0.025 26.3 13.6 103 71-179 120-255 (691)
47 COG0848 ExbD Biopolymer transp 21.6 5.6E+02 0.012 22.5 8.9 32 87-118 80-113 (137)
48 PRK00576 molybdopterin-guanine 20.5 5.3E+02 0.011 22.8 7.9 44 123-169 55-98 (178)
49 PRK13915 putative glucosyl-3-p 20.3 6.5E+02 0.014 24.9 9.1 97 73-178 29-150 (306)
50 cd04196 GT_2_like_d Subfamily 20.1 4.5E+02 0.0098 23.0 7.4 83 79-169 2-102 (214)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=8.5e-109 Score=837.75 Aligned_cols=380 Identities=59% Similarity=1.081 Sum_probs=344.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhh----cCCCcc-c---cccccccCCCCCcchhhhhhccc---CCCCCCCcEEEEE
Q 015902 13 QKKQKWFFSLVFSLLLSTILIIISVS----MSSTST-K---FYNRAYVQTPRPRFVEQQLQVVS---TSSEKIPRLAYLI 81 (398)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~kiAYLI 81 (398)
.+++||++|++++++++++|+++++. +++++. + +++....+.+.+.++|+++.+.+ +.++++|||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI 84 (421)
T PLN03183 5 NVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLV 84 (421)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEE
Confidence 47899999999999999888665541 122111 2 22333445666779999887543 3344579999999
Q ss_pred EecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------------ccchHHHHHHHHH
Q 015902 82 SGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------------RGPTMVTNTLHAA 135 (398)
Q Consensus 82 lahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------------gg~S~V~AtL~~~ 135 (398)
+||+||.+|++|||++||||+|+||||||+||+..++.+++ ||+|||+|||+||
T Consensus 85 ~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m 164 (421)
T PLN03183 85 SGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHAC 164 (421)
T ss_pred EecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHH
Confidence 99988999999999999999999999999999987754420 9999999999999
Q ss_pred HHHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeecccceecCCCccccccccccccccc
Q 015902 136 AILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEK 215 (398)
Q Consensus 136 ~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~~~i~dpgly~~~k~~~~~~~~k 215 (398)
+.||+...+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|..++
T Consensus 165 ~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~ 244 (421)
T PLN03183 165 AILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPR 244 (421)
T ss_pred HHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhh
Confidence 99999889999999999999999999998887777899999999998899999999999999999998888888999999
Q ss_pred CCCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHhcCCCCCCChhhhhhhccccccccccccCceeEEecCCCC
Q 015902 216 RNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPP 295 (398)
Q Consensus 216 R~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf~~t~~pDE~fFqTll~Ns~~f~~~~vn~~LRyi~W~~~~ 295 (398)
|.+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|++++
T Consensus 245 R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~ 324 (421)
T PLN03183 245 RSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPP 324 (421)
T ss_pred ccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999998
Q ss_pred CCCCccCCHhhHHHHhcCCCcEEecCCCChhHHHHHHHHHhCCCCCCcccCceecCCCCCCCCCCccccCCCCcccCCch
Q 015902 296 KQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAG 375 (398)
Q Consensus 296 ~~~P~~l~~~D~~~l~~S~~lFARKF~~d~~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~~c~~~g~~~~~~pg~~ 375 (398)
++||++|+++|+++|++|+++|||||+.|++|||+||+++++|.+++++|||||+| .||||+|||+++||||||
T Consensus 325 ~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~------~~~c~~~~~~~~~~p~~~ 398 (421)
T PLN03183 325 KQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG------KPKCSRVGDPAKIKPGPG 398 (421)
T ss_pred CCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC------CCcccccCCcCccCCCcH
Confidence 89999999999999999999999999999999999999999999999999999987 469999999999999999
Q ss_pred HHHHHHHHHhhcccccccCCCCC
Q 015902 376 AERIKRLITGLISAEDFHAKHCI 398 (398)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~c~ 398 (398)
|+||++||++||++++||++||+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 399 AQRLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHHHhchhccccccCC
Confidence 99999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-59 Score=480.64 Aligned_cols=310 Identities=46% Similarity=0.787 Sum_probs=284.0
Q ss_pred CCC-cEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------ccchHHHHH
Q 015902 73 KIP-RLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------RGPTMVTNT 131 (398)
Q Consensus 73 ~~~-kiAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------gg~S~V~At 131 (398)
.++ .+||+.++|+ |.++++|+++|+|||+|.||||||++|++.+|..+. ||+|+++|+
T Consensus 100 ~~~~~~a~~~~v~k-d~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~ 178 (439)
T KOG0799|consen 100 LKPFPAAFLRVVYK-DYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAH 178 (439)
T ss_pred ccccceEEEEeecc-cHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHH
Confidence 445 5555555666 999999999999999999999999999999875432 999999999
Q ss_pred HHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeecccceecCCCccccccccccc
Q 015902 132 LHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFW 211 (398)
Q Consensus 132 L~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~~~i~dpgly~~~k~~~~~ 211 (398)
|+||+.|++...+|||||||||+||||||++||+++|+.+ +|.|||++++..+|++.++.++...+++ |+.+++.+.|
T Consensus 179 l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~~~~s~~~~ 256 (439)
T KOG0799|consen 179 LNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YFRNKSPLPW 256 (439)
T ss_pred HHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hheecCCCcc
Confidence 9999999999889999999999999999999999999987 7999999999999999999888888988 6777777776
Q ss_pred ccccCCCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHhcCCCCCCChhhhhhhccccccccccccCc--eeEE
Q 015902 212 VPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHD--LHFI 289 (398)
Q Consensus 212 ~~~kR~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf~~t~~pDE~fFqTll~Ns~~f~~~~vn~~--LRyi 289 (398)
.. +|.++++++||.|++|||+||+||+.+ ++|+++++|++++++|||+||||++||+ |..+.++++ +||+
T Consensus 257 ~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~~--~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~~~~~lr~~ 328 (439)
T KOG0799|consen 257 VI----LPTALKLFKGSAWVSLSRAFVEYLISG--NLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVFNDECLRYT 328 (439)
T ss_pred cc----CCCceEEEecceeEEEeHHHHHHHhcC--ccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCcccchhhcce
Confidence 44 899999999999999999999999985 8999999999999999999999999998 888888999 9999
Q ss_pred ecCC----CCCCCCccCCHhhHHHHhcCCC-cEEecCC--CChhHHHHHHHHHhCCCCCCcccCceecCCCCCCCCCCcc
Q 015902 290 SWDN----PPKQHPHFLNVDDYQRMVDSNA-PFARKFG--RNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNH 362 (398)
Q Consensus 290 ~W~~----~~~~~P~~l~~~D~~~l~~S~~-lFARKF~--~d~~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~~c~ 362 (398)
.|+. ++++||+.++..|...|..++. .|||||. .++++++.+|.+++++.....++|+|| .. ..+.++|+
T Consensus 329 ~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~--~~-~~~~~~~~ 405 (439)
T KOG0799|consen 329 NWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC--DH-SLRTLPCS 405 (439)
T ss_pred ecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc--cc-cccccccc
Confidence 9998 6778999999999999999998 9999999 589999999999999888888899999 43 67889999
Q ss_pred ccCCCCcccCCchHHHHHHHHHhhcccccccCCC
Q 015902 363 AVANTSELKPGAGAERIKRLITGLISAEDFHAKH 396 (398)
Q Consensus 363 ~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 396 (398)
..++...+.|||++.|++.++..++..++|+..|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 406 ELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred ccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 9999999999999999999999999999998876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=6.9e-49 Score=373.44 Aligned_cols=218 Identities=36% Similarity=0.587 Sum_probs=145.0
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------ccchHHHHHHHHHH
Q 015902 77 LAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------RGPTMVTNTLHAAA 136 (398)
Q Consensus 77 iAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------gg~S~V~AtL~~~~ 136 (398)
|||||+||+++++++++|++++|+|+|+||||||+|++...+.+++ ||+|||+|||.||+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~ 80 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLR 80 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHHHH
Confidence 7999999998999999999999999999999999999876544221 99999999999999
Q ss_pred HHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeecccceecCCCcccccccccccccccC
Q 015902 137 ILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKR 216 (398)
Q Consensus 137 ~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~~~i~dpgly~~~k~~~~~~~~kR 216 (398)
.|++..++|||||||||+||||+|+++|.++|+..+++.+|+++....++....|+.+...++..+... ++
T Consensus 81 ~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~---------~~ 151 (244)
T PF02485_consen 81 EALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFR---------KR 151 (244)
T ss_dssp HHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEE---------EE
T ss_pred HHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccc---------cc
Confidence 999976799999999999999999999999999876678999887654433223333322222111100 01
Q ss_pred CCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHh-cCCCCCCChhhhhhhccccccccccccCceeEEecCCCC
Q 015902 217 NVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYY-ANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPP 295 (398)
Q Consensus 217 ~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf-~~t~~pDE~fFqTll~Ns~~f~~~~vn~~LRyi~W~~~~ 295 (398)
++|+|||||+|||++|+||+. |..+...++++ +++++|||+|||||++|++.|.++++++++|||+|++..
T Consensus 152 ------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~ 223 (244)
T PF02485_consen 152 ------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRG 223 (244)
T ss_dssp --------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-
T ss_pred ------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCC
Confidence 899999999999999999996 43443444444 599999999999999999789999999999999999545
Q ss_pred CCCCcc-----CCHhhHHHHh
Q 015902 296 KQHPHF-----LNVDDYQRMV 311 (398)
Q Consensus 296 ~~~P~~-----l~~~D~~~l~ 311 (398)
++||++ ++++|+++|.
T Consensus 224 ~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 224 GCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp SS---SSEEEE--GGGHHHH-
T ss_pred CCCCCeeeeeeeCHHHHHhhC
Confidence 677765 5778888773
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=78.87 E-value=61 Score=33.00 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=57.9
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHh-------------hcc--------ccch-H
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERL-------------ELA--------RGPT-M 127 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~-------------~l~--------gg~S-~ 127 (398)
..|+++.+|-+++ +.+.+.++++.|.. |.+.=+|-||..|.+...+ .+. .|++ .
T Consensus 38 ~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk 116 (384)
T TIGR03469 38 AWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGK 116 (384)
T ss_pred CCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcch
Confidence 4478999999998 67999999999853 3344466677776653110 111 2332 2
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEecCCcccccCh-hHHHHHhc
Q 015902 128 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQ-DDLLHVLS 169 (398)
Q Consensus 128 V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~-~eI~~~fs 169 (398)
..|.-.+++.+-+...+-||++++.+++.+-... +++.+.+.
T Consensus 117 ~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 117 LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 3344445555433333478999999988863322 44444444
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=70.54 E-value=1.1e+02 Score=31.73 Aligned_cols=89 Identities=11% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeE-EEEEcCCCCHHHHh----------hcc-------ccchHHHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALY---HPRNQY-AVHLDLEAPVEERL----------ELA-------RGPTMVTNT 131 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y-~IHvD~ks~~~~r~----------~l~-------gg~S~V~At 131 (398)
+.|+++.+|-+|+ ..+.+.++++++. .|...+ +|=+|..+++...+ .+. +|.+ .
T Consensus 47 ~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka---~- 121 (439)
T TIGR03111 47 KLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKA---K- 121 (439)
T ss_pred CCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHH---H-
Confidence 4578999999999 6799999999884 244333 55567766654211 011 3322 1
Q ss_pred HHHHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhc
Q 015902 132 LHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLS 169 (398)
Q Consensus 132 L~~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs 169 (398)
++..+++. .+-+|++.+.+++.|-.. ..++...|.
T Consensus 122 --AlN~gl~~-s~g~~v~~~DaD~~~~~d~L~~l~~~f~ 157 (439)
T TIGR03111 122 --ALNAAIYN-SIGKYIIHIDSDGKLHKDAIKNMVTRFE 157 (439)
T ss_pred --HHHHHHHH-ccCCEEEEECCCCCcChHHHHHHHHHHH
Confidence 12223332 345789999999998432 234444454
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=66.96 E-value=56 Score=30.17 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=56.9
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHcC---CC--CeEEEEEcCCCCHHH-----Hhh--cc-----ccchHHHHHHHH
Q 015902 72 EKIPRLAYLISGSTGDGESLKRTLKALYH---PR--NQYAVHLDLEAPVEE-----RLE--LA-----RGPTMVTNTLHA 134 (398)
Q Consensus 72 ~~~~kiAYLIlahk~d~~~l~rLl~aLy~---p~--n~y~IHvD~ks~~~~-----r~~--l~-----gg~S~V~AtL~~ 134 (398)
...++++.+|.+|+ +.+.|.++|+.+.. |. ..++|..|...+... ... +. ...+...|--.+
T Consensus 26 ~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~n~g 104 (251)
T cd06439 26 AYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPERRGKAAALNRA 104 (251)
T ss_pred CCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCCCCChHHHHHHH
Confidence 34588999999999 67889998888743 33 367777776554321 111 11 222344444444
Q ss_pred HHHHHhcCCCccEEEEecCCcccccChhHHHHHhcc
Q 015902 135 AAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 170 (398)
Q Consensus 135 ~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~ 170 (398)
++.+ .-||++++.+.+.|- .+.+.+.++.
T Consensus 105 i~~a-----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 105 LALA-----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred HHHc-----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 4432 239999999999995 5666555544
No 7
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=66.08 E-value=4 Score=28.71 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=23.6
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCeEEEEEc
Q 015902 81 ISGSTGDGESLKRTLKALYHPRNQYAVHLD 110 (398)
Q Consensus 81 Ilahk~d~~~l~rLl~aLy~p~n~y~IHvD 110 (398)
.++|. |.++|..+++.+ .|++.++||=|
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe 41 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGE 41 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSE
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCC
Confidence 46888 899999999999 79999999843
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=64.40 E-value=52 Score=29.97 Aligned_cols=85 Identities=13% Similarity=0.092 Sum_probs=47.2
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcC---C-CCeEEEEEcCCCCHHHHhh----------cc----ccchHHHHHHHHHHH
Q 015902 76 RLAYLISGSTGDGESLKRTLKALYH---P-RNQYAVHLDLEAPVEERLE----------LA----RGPTMVTNTLHAAAI 137 (398)
Q Consensus 76 kiAYLIlahk~d~~~l~rLl~aLy~---p-~n~y~IHvD~ks~~~~r~~----------l~----gg~S~V~AtL~~~~~ 137 (398)
+++.+|.+|+ +.+.+.++|+.+.. | .+.=+|=+|..+++..... +. .+-+.-.|--.+++.
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~ 79 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRN 79 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHH
Confidence 4677888888 68888988888842 2 2322334455444321111 11 111222332323332
Q ss_pred HHhcCCCccEEEEecCCcccccChhHHHHHh
Q 015902 138 LFKEGGDWDWFINLSASDYPLVTQDDLLHVL 168 (398)
Q Consensus 138 lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~f 168 (398)
.+.||++.|.+.|.+ +.+.|.+.+
T Consensus 80 -----a~~d~v~~lD~D~~~--~~~~l~~~~ 103 (249)
T cd02525 80 -----SRGDIIIRVDAHAVY--PKDYILELV 103 (249)
T ss_pred -----hCCCEEEEECCCccC--CHHHHHHHH
Confidence 257999999999986 555555555
No 9
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=57.79 E-value=2.2e+02 Score=28.80 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCCHHHHh---h---------cc-------ccch-HHHH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERL---E---------LA-------RGPT-MVTN 130 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y~IHvD~ks~~~~r~---~---------l~-------gg~S-~V~A 130 (398)
.|++..+|-+|+ +.+.+.+.|+++- .|+-.++| +|..+++...+ + +. .|+. -+.+
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~ 117 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSN 117 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHH
Confidence 477999999998 5688888888884 36656666 55555442111 0 11 2332 2333
Q ss_pred HHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 131 TLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 131 tL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
..+ +++. .+.||++.+.+++.| +.+-|.+...
T Consensus 118 l~~----~~~~-a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 118 LIN----MLPH-ARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred HHH----HHHh-ccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 332 3332 457899999888877 5665655543
No 10
>PRK11204 N-glycosyltransferase; Provisional
Probab=57.40 E-value=2.2e+02 Score=28.87 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=52.2
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCCHHHHhh----------cc-----ccchHHHHHHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLE----------LA-----RGPTMVTNTLHA 134 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y~IHvD~ks~~~~r~~----------l~-----gg~S~V~AtL~~ 134 (398)
..|+++.+|-+|+ +.+.+.+.++++. .|+..++| +|..+++...+. +. ...+.. . +
T Consensus 52 ~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka-~---a 125 (420)
T PRK11204 52 EYPGVSILVPCYN-EGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKA-N---A 125 (420)
T ss_pred CCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHH-H---H
Confidence 4578999999999 5788999888874 35445555 555554432111 11 111122 2 2
Q ss_pred HHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhc
Q 015902 135 AAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLS 169 (398)
Q Consensus 135 ~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs 169 (398)
+..+++. .+.||++.+.+++.|-.. ..++.+.|.
T Consensus 126 ln~g~~~-a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 126 LNTGAAA-ARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred HHHHHHH-cCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 2233332 467999999999987432 234444453
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=56.95 E-value=39 Score=30.65 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=46.3
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHh---hc---------c----ccchHHHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERL---EL---------A----RGPTMVTNTLHAA 135 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~---~l---------~----gg~S~V~AtL~~~ 135 (398)
|+++.+|.+++ ..+.+.+.|+++-+ |+-.++| +|..++....+ ++ . ..-.-..+.-.++
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~ 78 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARAL 78 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHH
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHH
Confidence 56899999998 68899999999964 4545555 45333322111 11 1 0000111122233
Q ss_pred HHHHhcCCCccEEEEecCCcccccChhHHHHHhccC-CCCcceEe
Q 015902 136 AILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTI-PRNLNFIE 179 (398)
Q Consensus 136 ~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~-~~g~nFIe 179 (398)
..+++. .+.||+++|.+.+.| ..+-|.+.+... ..+...+.
T Consensus 79 n~~~~~-~~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 79 NEALAA-ARGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHH----SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred HHHHHh-cCCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 444443 358899999999988 444444433221 34566665
No 12
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=54.41 E-value=1.2e+02 Score=27.29 Aligned_cols=87 Identities=25% Similarity=0.200 Sum_probs=48.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC--CeEEEEEcCCCCHHHHhhc---------c-------ccchHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PR--NQYAVHLDLEAPVEERLEL---------A-------RGPTMVTNTLH 133 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~--n~y~IHvD~ks~~~~r~~l---------~-------gg~S~V~AtL~ 133 (398)
|++..+|-+++.+.+.+++.++.|-. |+ -.++| +|..+++...+-+ . .|. ...+.-
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~n- 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYV-LDDGRRPELRALAAELGVEYGYRYLTRPDNRHA-KAGNLN- 77 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEE-EcCCCchhHHHHHHHhhcccCceEEEeCCCCCC-cHHHHH-
Confidence 35778888888445678888887743 33 24455 6666654322111 1 111 111112
Q ss_pred HHHHHHhcCCCccEEEEecCCcccccChhHHHHHhcc
Q 015902 134 AAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLST 170 (398)
Q Consensus 134 ~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~ 170 (398)
.+++. .+.+|++.+.+.|++ ..+.|.+.++.
T Consensus 78 ---~~~~~-a~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 78 ---NALAH-TTGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred ---HHHHh-CCCCEEEEEccccCc--CccHHHHHHHH
Confidence 23332 357899999999998 34566555543
No 13
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=51.22 E-value=99 Score=28.05 Aligned_cols=79 Identities=9% Similarity=-0.012 Sum_probs=45.6
Q ss_pred EEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhc---c----------ccchHHHHHHHHHHHHHhcCC
Q 015902 77 LAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLEL---A----------RGPTMVTNTLHAAAILFKEGG 143 (398)
Q Consensus 77 iAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l---~----------gg~S~V~AtL~~~~~lL~~~~ 143 (398)
+..+|.+|+...+.+.++|+.+......=+|=||..+++.....+ . .......|--.+++. .
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~-----a 76 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRH-----V 76 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHH-----h
Confidence 567888998433999999999976422223334444443322211 0 112223333333333 2
Q ss_pred CccEEEEecCCcccccC
Q 015902 144 DWDWFINLSASDYPLVT 160 (398)
Q Consensus 144 ~wdyfi~LSg~DyPLkt 160 (398)
+.||++.|.+.+.|-..
T Consensus 77 ~~d~v~~lD~D~~~~~~ 93 (235)
T cd06434 77 TTDIVVLLDSDTVWPPN 93 (235)
T ss_pred CCCEEEEECCCceeChh
Confidence 57999999999998754
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=50.16 E-value=1.4e+02 Score=32.10 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHH----HcCCCCeEEEEEcCCCCHH--HHhh-------cc-------ccchHHHHH
Q 015902 72 EKIPRLAYLISGSTGDGESLKRTLKA----LYHPRNQYAVHLDLEAPVE--ERLE-------LA-------RGPTMVTNT 131 (398)
Q Consensus 72 ~~~~kiAYLIlahk~d~~~l~rLl~a----Ly~p~n~y~IHvD~ks~~~--~r~~-------l~-------gg~S~V~At 131 (398)
.+.++++.+|-+|+ +.+.+.++++. ++.|+-.++|=.|...+.. .-++ +. |+.+-..|-
T Consensus 63 ~~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aL 141 (504)
T PRK14716 63 VPEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCL 141 (504)
T ss_pred CCCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHH
Confidence 45689999999999 67888887774 3346656666665444331 1111 11 333444444
Q ss_pred HHHHHHHHh----cCCCccEEEEecCCcccccCh
Q 015902 132 LHAAAILFK----EGGDWDWFINLSASDYPLVTQ 161 (398)
Q Consensus 132 L~~~~~lL~----~~~~wdyfi~LSg~DyPLkt~ 161 (398)
=.+++.+.+ .+.++|+++.+-+.|.|=...
T Consensus 142 N~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 142 NWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 334444322 234689999999998865433
No 15
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=50.09 E-value=1.4e+02 Score=26.23 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=48.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHH---H-Hhh-------cc-----ccchHHHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVE---E-RLE-------LA-----RGPTMVTNTLHAA 135 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~---~-r~~-------l~-----gg~S~V~AtL~~~ 135 (398)
|++..+|.+++.+.+.+.++|+.|.. +...+ |=+|..+++. . ... +. .......|--.++
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~ei-ivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 79 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWEL-CIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSAL 79 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEE-EEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHH
Confidence 46788999998433999999999864 22344 4445444331 1 111 11 2223334444444
Q ss_pred HHHHhcCCCccEEEEecCCcccccC-hhHHHHHh
Q 015902 136 AILFKEGGDWDWFINLSASDYPLVT-QDDLLHVL 168 (398)
Q Consensus 136 ~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~f 168 (398)
+.+ .-||+..+.+.|.+-.. .+.+.+.+
T Consensus 80 ~~a-----~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 80 ELA-----TGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred Hhh-----cCCEEEEECCCCcCChHHHHHHHHHH
Confidence 432 34899999888877332 24444444
No 16
>PRK10063 putative glycosyl transferase; Provisional
Probab=47.53 E-value=2.5e+02 Score=26.66 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC-----CCCeEEEEEcCCCCHHHHhh---------cc------ccchHHHHHHH-
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH-----PRNQYAVHLDLEAPVEERLE---------LA------RGPTMVTNTLH- 133 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~-----p~n~y~IHvD~ks~~~~r~~---------l~------gg~S~V~AtL~- 133 (398)
|++..+|.+++ ..+.|.+.++.|.. ..+.=+|=||..|++...+- +. .|. .+.++
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~~~~G~---~~A~N~ 76 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSEPDNGI---YDAMNK 76 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEECCCCCH---HHHHHH
Confidence 67889999998 68899999888841 23455777888776642111 11 232 23332
Q ss_pred HHHHHHhcCCCccEEEEecCCcccccChhHHHHHh
Q 015902 134 AAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 168 (398)
Q Consensus 134 ~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~f 168 (398)
+++.+ .-+|+..|.+.|...-...++...+
T Consensus 77 Gi~~a-----~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 77 GIAMA-----QGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHc-----CCCEEEEEeCCcccCcCHHHHHHHH
Confidence 33332 3489999999999876543444444
No 17
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=47.35 E-value=1.1e+02 Score=30.73 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEEecCCCHHHHHHHHHHHcC---------CC-CeEEEEEcCCCCH
Q 015902 71 SEKIPRLAYLISGSTGDGESLKRTLKALYH---------PR-NQYAVHLDLEAPV 115 (398)
Q Consensus 71 ~~~~~kiAYLIlahk~d~~~l~rLl~aLy~---------p~-n~y~IHvD~ks~~ 115 (398)
..+.+.+..+|-+++ +.+.+.++++.+.. +. +.=+|=||..|++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD 119 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKD 119 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCC
Confidence 346689999999999 67888888877642 22 3445666766654
No 18
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=45.88 E-value=1.3e+02 Score=27.40 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=51.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhh-------cc-----ccchHHHHHHHHHHHHHhcCCCccE
Q 015902 80 LISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLE-------LA-----RGPTMVTNTLHAAAILFKEGGDWDW 147 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~-------l~-----gg~S~V~AtL~~~~~lL~~~~~wdy 147 (398)
+|.++++..+.+.++|+.+... +.-+|=||..+++..... +. .......|-=.+++.+.. .+.||
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~--~~~d~ 78 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALE--NGADY 78 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHh--CCCCE
Confidence 5778884339999999999865 445566887765432111 11 112223333334444432 36899
Q ss_pred EEEecCCcccccChhHHHHH
Q 015902 148 FINLSASDYPLVTQDDLLHV 167 (398)
Q Consensus 148 fi~LSg~DyPLkt~~eI~~~ 167 (398)
+++|.+.+++ ..+.|.+.
T Consensus 79 v~~lD~D~~~--~~~~l~~l 96 (237)
T cd02526 79 VLLFDQDSVP--PPDMVEKL 96 (237)
T ss_pred EEEECCCCCc--CHhHHHHH
Confidence 9999999997 46666665
No 19
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=45.83 E-value=93 Score=26.92 Aligned_cols=93 Identities=11% Similarity=0.077 Sum_probs=50.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCC----CCeEEEEEcCCCCHHHHhhcc---------------ccchHHHHHHHHHHHHHh
Q 015902 80 LISGSTGDGESLKRTLKALYHP----RNQYAVHLDLEAPVEERLELA---------------RGPTMVTNTLHAAAILFK 140 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~p----~n~y~IHvD~ks~~~~r~~l~---------------gg~S~V~AtL~~~~~lL~ 140 (398)
+|.+|+ +.+.+.++|+.+..- .+.=+|=+|..+++.....+. ...+...|.-.+++.+
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a-- 78 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAA-- 78 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHh--
Confidence 466777 678888888887533 234455556555432221110 2222334444444433
Q ss_pred cCCCccEEEEecCCcccccChhHHHHHhcc-CCCCcceEee
Q 015902 141 EGGDWDWFINLSASDYPLVTQDDLLHVLST-IPRNLNFIEH 180 (398)
Q Consensus 141 ~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~-~~~g~nFIe~ 180 (398)
.+ ||++.|.+.|.+ +.+.|.+.++. ...+...+-.
T Consensus 79 -~g--d~i~~lD~D~~~--~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 79 -RG--DIVVTMDADLQH--PPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred -cC--CEEEEEeCCCCC--CHHHHHHHHHHHhccCCcEEEE
Confidence 12 899999999875 55656655543 2334555543
No 20
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=44.92 E-value=1.7e+02 Score=27.08 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=51.2
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc-----------ccchHHHHHHHHHHHHHhcCCC
Q 015902 76 RLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA-----------RGPTMVTNTLHAAAILFKEGGD 144 (398)
Q Consensus 76 kiAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~-----------gg~S~V~AtL~~~~~lL~~~~~ 144 (398)
+++.+|.+++ +.+.|.++|++|..-...+ |=||..|++...+-++ +|++ +..+ .+++. ..
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~~~~ei-ivvD~gStD~t~~i~~~~~~~v~~~~~~g~~---~~~n---~~~~~-a~ 71 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKWAVDEI-IVVDSGSTDRTVEIAKEYGAKVYQRWWDGFG---AQRN---FALEL-AT 71 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhcccCEE-EEEeCCCCccHHHHHHHcCCEEEECCCCChH---HHHH---HHHHh-CC
Confidence 4678888988 6899999999997432344 4477777654221111 3433 2222 12221 23
Q ss_pred ccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 145 WDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 145 wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
-+|++.|.+.+.+-.. .+++.+.+..
T Consensus 72 ~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 72 NDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred CCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 4699999999986543 3445555554
No 21
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=43.47 E-value=11 Score=30.07 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=15.9
Q ss_pred ecCCcccccChhHHHHHhc
Q 015902 151 LSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 151 LSg~DyPLkt~~eI~~~fs 169 (398)
+.|.|||++|+.||...|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4588999999999999983
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=41.96 E-value=19 Score=31.18 Aligned_cols=18 Identities=11% Similarity=0.484 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q 015902 17 KWFFSLVFSLLLSTILII 34 (398)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (398)
||++.+++.++++++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687665555544444444
No 23
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=41.85 E-value=2e+02 Score=25.26 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=46.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---C-CCeEEEEEcCCCCHHHHhhc---c---------ccchHHHHHHHHHHHHHhcCC
Q 015902 80 LISGSTGDGESLKRTLKALYH---P-RNQYAVHLDLEAPVEERLEL---A---------RGPTMVTNTLHAAAILFKEGG 143 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~---p-~n~y~IHvD~ks~~~~r~~l---~---------gg~S~V~AtL~~~~~lL~~~~ 143 (398)
+|-+++ +.+.+.++|+++.. | .+.-+|=||..+++...+.+ . ...+.-.|.-.+++.+.+...
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~ 80 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLAD 80 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 566777 67888888888843 2 22223345555544321111 0 111222333344555543335
Q ss_pred CccEEEEecCCcccccChhHHHHHh
Q 015902 144 DWDWFINLSASDYPLVTQDDLLHVL 168 (398)
Q Consensus 144 ~wdyfi~LSg~DyPLkt~~eI~~~f 168 (398)
+.||++.+.+.+.|- .+.|.+..
T Consensus 81 ~~d~v~~~DaD~~~~--p~~l~~l~ 103 (183)
T cd06438 81 DPDAVVVFDADNLVD--PNALEELN 103 (183)
T ss_pred CCCEEEEEcCCCCCC--hhHHHHHH
Confidence 689999999988874 44444443
No 24
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=41.24 E-value=2.3e+02 Score=24.32 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=45.0
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHhhc-----------c------ccchHHHHHHHHHHHHH
Q 015902 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLEL-----------A------RGPTMVTNTLHAAAILF 139 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~~l-----------~------gg~S~V~AtL~~~~~lL 139 (398)
+|.+++ ..+.++++|+++.. +...++| +|..+++...+.+ . .|++...+--.+++.
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~-- 77 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEVII-ADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA-- 77 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEEEE-EeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH--
Confidence 567777 57889999998853 3334444 5555554321111 0 233332222223332
Q ss_pred hcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 140 KEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 140 ~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
..-+|++.|.+.+.| +.+-|.+.+.
T Consensus 78 ---a~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 78 ---AKGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred ---hcCCEEEEEcCCccc--CHHHHHHHHH
Confidence 235899999999988 4445555443
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=41.20 E-value=1.7e+02 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=27.6
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCCH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PR-NQYAVHLDLEAPV 115 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~-n~y~IHvD~ks~~ 115 (398)
|++..+|.+|+ ..+.|.++|++|.. |. ..-+|=+|. +++
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D 43 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STD 43 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCC
Confidence 36788999998 68999999999853 32 223445786 543
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=40.67 E-value=1.2e+02 Score=25.06 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=43.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCCHHHHh------h-----cc-----ccchHHHHHHHHHHHHHh
Q 015902 80 LISGSTGDGESLKRTLKALYHP---RNQYAVHLDLEAPVEERL------E-----LA-----RGPTMVTNTLHAAAILFK 140 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~p---~n~y~IHvD~ks~~~~r~------~-----l~-----gg~S~V~AtL~~~~~lL~ 140 (398)
+|.+++ ..+.|.++|+.|... ...++|- |..+++.... . +. ...+...|--.+++.
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iivv-dd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~--- 76 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIVV-DDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRH--- 76 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEEE-eCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHh---
Confidence 456676 578888888888653 3455554 4444432111 0 00 222233333333332
Q ss_pred cCCCccEEEEecCCcccccChhHHHHH
Q 015902 141 EGGDWDWFINLSASDYPLVTQDDLLHV 167 (398)
Q Consensus 141 ~~~~wdyfi~LSg~DyPLkt~~eI~~~ 167 (398)
.+-+|++++.+.|++- .+.|...
T Consensus 77 --~~~~~i~~~D~D~~~~--~~~l~~~ 99 (180)
T cd06423 77 --AKGDIVVVLDADTILE--PDALKRL 99 (180)
T ss_pred --cCCCEEEEECCCCCcC--hHHHHHH
Confidence 2578999999998774 4555544
No 27
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.28 E-value=1.5e+02 Score=24.62 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=44.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCCHHHHhhc-------c-----ccchHHHHHHHHHHHHHhcCCC
Q 015902 80 LISGSTGDGESLKRTLKALYHP---RNQYAVHLDLEAPVEERLEL-------A-----RGPTMVTNTLHAAAILFKEGGD 144 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~p---~n~y~IHvD~ks~~~~r~~l-------~-----gg~S~V~AtL~~~~~lL~~~~~ 144 (398)
+|.+++ ..+.+.++++.|... ...++| +|..+.+.....+ . ...+...|--.+++.+ +
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~-----~ 74 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREA-----K 74 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhC-----C
Confidence 566777 689999999998643 345555 4444443322211 1 1223333333333332 5
Q ss_pred ccEEEEecCCcccccChhHHHHHh
Q 015902 145 WDWFINLSASDYPLVTQDDLLHVL 168 (398)
Q Consensus 145 wdyfi~LSg~DyPLkt~~eI~~~f 168 (398)
.+|++.+.+.+++- .+.+....
T Consensus 75 ~~~i~~~D~D~~~~--~~~l~~~~ 96 (166)
T cd04186 75 GDYVLLLNPDTVVE--PGALLELL 96 (166)
T ss_pred CCEEEEECCCcEEC--ccHHHHHH
Confidence 78999999888874 33344443
No 28
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=39.03 E-value=2e+02 Score=22.92 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=41.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCCHHHHhhc----------c-----ccchHHHHHHHHHHHHHhcC
Q 015902 80 LISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLEL----------A-----RGPTMVTNTLHAAAILFKEG 142 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~p~--n~y~IHvD~ks~~~~r~~l----------~-----gg~S~V~AtL~~~~~lL~~~ 142 (398)
+|.+++ +.+.+.++++++.... +.-++-+|..++......+ . +..+...+--.+++.+
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---- 76 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA---- 76 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh----
Confidence 456666 5788888888886443 4444456665544321111 0 2233333333333332
Q ss_pred CCccEEEEecCCcccccC
Q 015902 143 GDWDWFINLSASDYPLVT 160 (398)
Q Consensus 143 ~~wdyfi~LSg~DyPLkt 160 (398)
+.||++.+.+.+.+...
T Consensus 77 -~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 77 -RGEYILFLDADDLLLPD 93 (156)
T ss_pred -cCCEEEEECCCCccCcc
Confidence 57889999887776443
No 29
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=38.43 E-value=2.2e+02 Score=25.28 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=46.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHh------------hcc-------ccchHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERL------------ELA-------RGPTMVTNTL 132 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~------------~l~-------gg~S~V~AtL 132 (398)
|++..+|-+|+ ..+.|.++|+.|.. |...++| ||..+++...+ .+. .|.+.- .
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~~eiiv-Vdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~ 75 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPKYEILF-CVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPK---V 75 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCCeEEEE-EeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHh---H
Confidence 45788888998 46778888888853 4444444 44444432111 110 233211 1
Q ss_pred HHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 133 HAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 133 ~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
.++..+++. ...+|++++-+.+.+ +.+.|.+.+.
T Consensus 76 ~~~n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 76 NNLIKGYEE-ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred HHHHHHHHh-CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 122233332 346889888777764 5555555543
No 30
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.89 E-value=20 Score=28.69 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=16.6
Q ss_pred ecCCcccccChhHHHHHhc
Q 015902 151 LSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 151 LSg~DyPLkt~~eI~~~fs 169 (398)
+-|.|||++++.+|...|-
T Consensus 16 ~k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 16 LKGADFPINNPEELVAALP 34 (80)
T ss_pred HccCCCCCCCHHHHHHhcc
Confidence 3489999999999999984
No 31
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=36.44 E-value=3.5e+02 Score=25.02 Aligned_cols=87 Identities=9% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCCHHHHh---h---------cc-------ccchHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKAL----YHPRNQYAVHLDLEAPVEERL---E---------LA-------RGPTMVT 129 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aL----y~p~n~y~IHvD~ks~~~~r~---~---------l~-------gg~S~V~ 129 (398)
..|++..+|-+++ ..+.+..+++.+ ....+.=+|-||..|++...+ + +. .|.+ .
T Consensus 7 ~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~--~ 83 (243)
T PLN02726 7 GAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLG--T 83 (243)
T ss_pred CCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHH--H
Confidence 4578999999998 677777766655 223344466677666553211 1 11 2332 2
Q ss_pred HHHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 130 NTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 130 AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
|--.+++. ..-+|++.+.+.+.+ ..+.|...+.
T Consensus 84 a~n~g~~~-----a~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 84 AYIHGLKH-----ASGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred HHHHHHHH-----cCCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 33333332 235799999998874 5555555543
No 32
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.80 E-value=2.4e+02 Score=24.31 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=42.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCCHHHHhhc-------c-----ccchHHHHHHHHHHHHHhcCCC
Q 015902 79 YLISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLEL-------A-----RGPTMVTNTLHAAAILFKEGGD 144 (398)
Q Consensus 79 YLIlahk~d~~~l~rLl~aLy~p~--n~y~IHvD~ks~~~~r~~l-------~-----gg~S~V~AtL~~~~~lL~~~~~ 144 (398)
.+|.+|+ ..+.|.++|+.|.... +.=+|=+|..+++.....+ . ...+...|--.+++. .+
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~-----a~ 75 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIAL-----AT 75 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHH-----cC
Confidence 3567887 5788889888885322 1224445666554322111 0 222333333333332 24
Q ss_pred ccEEEEecCCcccccC
Q 015902 145 WDWFINLSASDYPLVT 160 (398)
Q Consensus 145 wdyfi~LSg~DyPLkt 160 (398)
-+|++.|.+.|.+...
T Consensus 76 ~~~v~~ld~D~~~~~~ 91 (202)
T cd06433 76 GDIIGFLNSDDTLLPG 91 (202)
T ss_pred CCEEEEeCCCcccCch
Confidence 5899999999988753
No 33
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.49 E-value=2.3e+02 Score=24.97 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=41.5
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHhhc---------c-------ccchHHHHHHHHHHHHHh
Q 015902 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERLEL---------A-------RGPTMVTNTLHAAAILFK 140 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~~l---------~-------gg~S~V~AtL~~~~~lL~ 140 (398)
+|.+++ ..+.|.++|++|.. |... +|=+|..+++...+.+ . .|.+ .+-=.+++.+.
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~e-iiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~--~~~n~~~~~a~- 76 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDH-IIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGA--GGFYEGVRRAY- 76 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCce-EEEEECCCCcchHHHHHHhcCCCceEEEECccccchh--hHHHHHHHHHh-
Confidence 567887 57889999999863 2233 4555665554321111 1 2221 12222333343
Q ss_pred cCCCccEEEEecCCcccc
Q 015902 141 EGGDWDWFINLSASDYPL 158 (398)
Q Consensus 141 ~~~~wdyfi~LSg~DyPL 158 (398)
..+.||++.+.+.+.+.
T Consensus 77 -~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 77 -ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred -ccCCCEEEEeCCCCCcC
Confidence 24679999999888875
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=33.60 E-value=3.4e+02 Score=27.05 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc-----CCCCeEEEEEcCCCCHHHHh-----------hc-----cccchHHHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALY-----HPRNQYAVHLDLEAPVEERL-----------EL-----ARGPTMVTNT 131 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy-----~p~n~y~IHvD~ks~~~~r~-----------~l-----~gg~S~V~At 131 (398)
+.+++..+|-+++ +.+.+.++++.+. .+.+.=+|=||..|++...+ .+ ..++..-.|.
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 3467899999998 6777777776653 12333455666666543211 11 1444444555
Q ss_pred HHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhccC
Q 015902 132 LHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTI 171 (398)
Q Consensus 132 L~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~ 171 (398)
..+++.+ +-||++.+.+++-. +.++|.+.++..
T Consensus 83 ~~G~~~A-----~gd~vv~~DaD~q~--~p~~i~~l~~~~ 115 (325)
T PRK10714 83 MAGFSHV-----TGDLIITLDADLQN--PPEEIPRLVAKA 115 (325)
T ss_pred HHHHHhC-----CCCEEEEECCCCCC--CHHHHHHHHHHH
Confidence 5444433 45899998887763 666676666543
No 35
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=33.37 E-value=3.3e+02 Score=28.28 Aligned_cols=77 Identities=10% Similarity=0.128 Sum_probs=47.7
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCCHHHHh---h-------cc-------ccchHHHHHHH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERL---E-------LA-------RGPTMVTNTLH 133 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y~IHvD~ks~~~~r~---~-------l~-------gg~S~V~AtL~ 133 (398)
.|+++.+|-+|+ +...+.++++++- .|+-.+ |-||..+++...+ + +. +| -..
T Consensus 74 ~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~eI-ivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~G---ka~--- 145 (444)
T PRK14583 74 HPLVSILVPCFN-EGLNARETIHAALAQTYTNIEV-IAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQG---KAI--- 145 (444)
T ss_pred CCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeEE-EEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCC---HHH---
Confidence 478999999999 6788888888874 355454 4455555442211 1 11 22 122
Q ss_pred HHHHHHhcCCCccEEEEecCCccccc
Q 015902 134 AAAILFKEGGDWDWFINLSASDYPLV 159 (398)
Q Consensus 134 ~~~~lL~~~~~wdyfi~LSg~DyPLk 159 (398)
++...++. .+.||++.+.+++.|-.
T Consensus 146 AlN~gl~~-a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 146 ALRMGAAA-ARSEYLVCIDGDALLDK 170 (444)
T ss_pred HHHHHHHh-CCCCEEEEECCCCCcCH
Confidence 22333332 46899999999998743
No 36
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=32.72 E-value=1.3e+02 Score=24.79 Aligned_cols=84 Identities=19% Similarity=0.187 Sum_probs=48.3
Q ss_pred EEEecCCCHHHHHHHHHHHcC---CCCeEEEEEcCCCCHHHHh---h-------cc-----ccchHHHHHHHHHHHHHhc
Q 015902 80 LISGSTGDGESLKRTLKALYH---PRNQYAVHLDLEAPVEERL---E-------LA-----RGPTMVTNTLHAAAILFKE 141 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aLy~---p~n~y~IHvD~ks~~~~r~---~-------l~-----gg~S~V~AtL~~~~~lL~~ 141 (398)
+|.+++ ..+.|.++|+.|-. +...++|--|.. ++.... + +. .....-.+--.+++.+-
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~-- 78 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAK-- 78 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEEEEecccc-ccccccccccccccccccccccccccccccccccccccccc--
Confidence 566777 57888888876643 455555544444 332111 1 11 23344455555555442
Q ss_pred CCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 142 GGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 142 ~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
-+|+..+.+.|++... .+++.+.+.+
T Consensus 79 ---~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 79 ---GEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp ---SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ---eeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 2399999999999988 7788888875
No 37
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=31.42 E-value=3.5e+02 Score=24.89 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=49.2
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcC---CCC-eEEEEEcCCCCHHHHhhc-----------c-----ccchHHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYH---PRN-QYAVHLDLEAPVEERLEL-----------A-----RGPTMVTNTLHA 134 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~---p~n-~y~IHvD~ks~~~~r~~l-----------~-----gg~S~V~AtL~~ 134 (398)
|+++.+|-+++ +.+.|.++|+.+.. |.. .=+|-||..+++...+.+ . +..+... +
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~----a 75 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPK----A 75 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHH----H
Confidence 46788899998 67999999999853 322 224555655554321111 0 1111222 2
Q ss_pred HHHHHhcCCCccEEEEecCCcccccCh-hHHHHHhc
Q 015902 135 AAILFKEGGDWDWFINLSASDYPLVTQ-DDLLHVLS 169 (398)
Q Consensus 135 ~~~lL~~~~~wdyfi~LSg~DyPLkt~-~eI~~~fs 169 (398)
+..+++. ..-||++.+.+.|.+-... .++..+|.
T Consensus 76 ~n~g~~~-a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 76 CNYALAF-ARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHh-cCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 2233332 3458999999998855332 24444443
No 38
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=28.50 E-value=3.2e+02 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=14.4
Q ss_pred ccceeEEecHHHHHHhhhc
Q 015902 226 TGSAWMMLSRPFIEFCLWG 244 (398)
Q Consensus 226 ~GSqW~~LtR~fveyil~~ 244 (398)
.++..+.++|+.++-+-..
T Consensus 147 ~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 147 NGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred CCCCEEEEcHHHHHHHHhc
Confidence 3566789999999987643
No 39
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=27.27 E-value=2.6e+02 Score=25.39 Aligned_cols=100 Identities=27% Similarity=0.329 Sum_probs=64.5
Q ss_pred EEEecCCCHHHHHHHHHHH----cCCCCeEEEEEcCCCCHHHH------------hhcc-----------ccchHHHHHH
Q 015902 80 LISGSTGDGESLKRTLKAL----YHPRNQYAVHLDLEAPVEER------------LELA-----------RGPTMVTNTL 132 (398)
Q Consensus 80 LIlahk~d~~~l~rLl~aL----y~p~n~y~IHvD~ks~~~~r------------~~l~-----------gg~S~V~AtL 132 (398)
+|+++.|-..+|.+|++.+ ++++.+++=.=|..+...-. ..+. .=++++.+.+
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~~~~ 82 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLRAFL 82 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHHHHH
Confidence 5667777789999999999 55444444444444433100 0111 3367788899
Q ss_pred HHHHHHHhcCCCccE-EEEecCCcccccChhHHHHHhccCCCCcceEeec
Q 015902 133 HAAAILFKEGGDWDW-FINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHT 181 (398)
Q Consensus 133 ~~~~~lL~~~~~wdy-fi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~ 181 (398)
.++..+.+..+ |- +-|=.|.++|+.=...+.++|.-.....-|||..
T Consensus 83 ~~~~il~r~rP--dvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 83 QSLRILRRERP--DVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHhCC--CEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 99998887543 33 3344678999988888888876433446777764
No 40
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.28 E-value=3.3e+02 Score=24.17 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=46.6
Q ss_pred EEEEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCCHHHHhhcc----------ccchHHHHHHHHHHHHHhcCCCc
Q 015902 78 AYLISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLELA----------RGPTMVTNTLHAAAILFKEGGDW 145 (398)
Q Consensus 78 AYLIlahk~d~~~l~rLl~aLy~p~--n~y~IHvD~ks~~~~r~~l~----------gg~S~V~AtL~~~~~lL~~~~~w 145 (398)
+.+|.+|+ ..+.+.++|+.|.... +.-+|=||..+++.....++ .|.+ ..++ .+++. ..-
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~~g~~---~a~n---~g~~~-a~~ 73 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSPKGRA---RQMN---AGAAA-ARG 73 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCCcCHH---HHHH---HHHHh-ccC
Confidence 45677887 5788888888875322 33455567776553222111 3333 2222 22222 235
Q ss_pred cEEEEecCCcccccChhHHHHHh
Q 015902 146 DWFINLSASDYPLVTQDDLLHVL 168 (398)
Q Consensus 146 dyfi~LSg~DyPLkt~~eI~~~f 168 (398)
+|++++.+.++| +.+.+.+.+
T Consensus 74 ~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 74 DWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred CEEEEEcCCCCC--ChhHHHHHH
Confidence 899999999988 456665544
No 41
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=23.96 E-value=5.3e+02 Score=25.65 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCcEEEEEEecCCCH--HHHHHHHHHH
Q 015902 73 KIPRLAYLISGSTGDG--ESLKRTLKAL 98 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~--~~l~rLl~aL 98 (398)
..+.||||+.+..|-. .....+.+++
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l 42 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKF 42 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3588999999987632 4456666666
No 42
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=23.29 E-value=7.7e+02 Score=27.54 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=52.2
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHH---cCCC-CeEEEEEcCCCCHH--------------HHhh---cc---------
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKAL---YHPR-NQYAVHLDLEAPVE--------------ERLE---LA--------- 122 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aL---y~p~-n~y~IHvD~ks~~~--------------~r~~---l~--------- 122 (398)
..|+++.+|-+|+.+.+.+++.++++ +.|. +.=++=+|..|++. .+.+ +.
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~ 208 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYIT 208 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEE
Confidence 34789999999995555666666665 3463 32233345443221 0111 11
Q ss_pred --ccchHHHHHHHHHHHHHhcCCCccEEEEecCCcccccCh-hHHHHHhccCCCCcceE
Q 015902 123 --RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQ-DDLLHVLSTIPRNLNFI 178 (398)
Q Consensus 123 --gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~-~eI~~~fs~~~~g~nFI 178 (398)
.+.. +--.++..+++. .+-||++.+.+++.|-... .++..+|.+ +.+.-++
T Consensus 209 r~~n~~---~KAgnLN~al~~-a~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 209 RPRNVH---AKAGNINNALKH-TDGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CCCCCC---CChHHHHHHHHh-cCCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 0000 001122334443 3458999999999996442 344555543 2334444
No 43
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=23.23 E-value=2.6e+02 Score=27.87 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=10.5
Q ss_pred CCCcEEEEEEecCC
Q 015902 73 KIPRLAYLISGSTG 86 (398)
Q Consensus 73 ~~~kiAYLIlahk~ 86 (398)
..+.||||+.+..|
T Consensus 16 ~rl~HAyLf~G~~G 29 (290)
T PRK05917 16 QKVPSAIILHGQDL 29 (290)
T ss_pred CCcCeeEeeECCCC
Confidence 35788999887765
No 44
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=22.87 E-value=4.7e+02 Score=24.71 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=43.0
Q ss_pred cCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHH-HHhh-------cc-----ccchHHHHHHHHHHHHHhcCCCccEEEE
Q 015902 84 STGDGESLKRTLKALYHPRNQYAVHLDLEAPVE-ERLE-------LA-----RGPTMVTNTLHAAAILFKEGGDWDWFIN 150 (398)
Q Consensus 84 hk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~-~r~~-------l~-----gg~S~V~AtL~~~~~lL~~~~~wdyfi~ 150 (398)
++.+.+.|++++++|.. ++.-+|=||..|+.. ...+ +. .....-.|-=.+++.|++ .+.||+++
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~--~~~d~i~~ 79 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFR--RGVQGVLL 79 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHH--CCCCEEEE
Confidence 33246788899988874 456677788775422 2111 11 111112233335566654 36899999
Q ss_pred ecCCcccc
Q 015902 151 LSASDYPL 158 (398)
Q Consensus 151 LSg~DyPL 158 (398)
|-..+.|-
T Consensus 80 lD~D~~~~ 87 (281)
T TIGR01556 80 LDQDSRPG 87 (281)
T ss_pred ECCCCCCC
Confidence 99999996
No 45
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=22.44 E-value=1.3e+02 Score=27.85 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCC
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEA 113 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks 113 (398)
......|++.+| .-+++..++.|...+-..|||+|.=-
T Consensus 22 s~~~~vflL~~~---i~~ik~ivk~lK~~gK~vfiHvDLv~ 59 (181)
T COG1954 22 SESQYVFLLTGH---ILNIKEIVKKLKNRGKTVFIHVDLVE 59 (181)
T ss_pred CCCeEEEEEech---hhhHHHHHHHHHhCCcEEEEEeHHhc
Confidence 447788888775 47888888889888899999999643
No 46
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=22.03 E-value=1.1e+03 Score=26.32 Aligned_cols=103 Identities=19% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCCcEEEEEEecCCCHH----HHHHHHHHHc---CCCCeEEEEEcCCCCHH----HHh---hcc--------------
Q 015902 71 SEKIPRLAYLISGSTGDGE----SLKRTLKALY---HPRNQYAVHLDLEAPVE----ERL---ELA-------------- 122 (398)
Q Consensus 71 ~~~~~kiAYLIlahk~d~~----~l~rLl~aLy---~p~n~y~IHvD~ks~~~----~r~---~l~-------------- 122 (398)
.++.++.+.+|-+|+.|++ .++..++.+. .+++.-++=+|..+++. +++ ++.
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 3455899999999997664 4555555543 34444444455444432 111 111
Q ss_pred ---ccchHHHHHHHHHHHHHh-cCCCccEEEEecCCcccccC-hhHHHHHhccCCCCcceEe
Q 015902 123 ---RGPTMVTNTLHAAAILFK-EGGDWDWFINLSASDYPLVT-QDDLLHVLSTIPRNLNFIE 179 (398)
Q Consensus 123 ---gg~S~V~AtL~~~~~lL~-~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~~~~g~nFIe 179 (398)
+|. =.. + +..+++ .+.++||++.|.++..|-.. ..+++..+.. +.+.-.|.
T Consensus 200 ~~n~~~--KaG--N-l~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~-dP~vGlVQ 255 (691)
T PRK05454 200 RRNVGR--KAG--N-IADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA-NPRAGLIQ 255 (691)
T ss_pred CcCCCc--cHH--H-HHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh-CcCEEEEe
Confidence 111 011 1 112233 24679999999998887643 3455555543 23455554
No 47
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=21.65 E-value=5.6e+02 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHc--CCCCeEEEEEcCCCCHHHH
Q 015902 87 DGESLKRTLKALY--HPRNQYAVHLDLEAPVEER 118 (398)
Q Consensus 87 d~~~l~rLl~aLy--~p~n~y~IHvD~ks~~~~r 118 (398)
+.+.+...+.++. .++..++|+-|++++....
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~v 113 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTV 113 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHH
Confidence 5577777777776 3444799999999987643
No 48
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=20.50 E-value=5.3e+02 Score=22.79 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 123 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 123 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
.|.+...+...+++.++.. +++| +++...|+|+.+.+.+.+.+.
T Consensus 55 ~g~gpl~~~~~gl~~~~~~--~~~~-~lv~~~DmP~i~~~~i~~L~~ 98 (178)
T PRK00576 55 RGLGPLPATGRGLRAAAEA--GARL-AFVCAVDMPYLTVELIDDLAR 98 (178)
T ss_pred CCCCcHHHHHHHHHHHHhc--CCCE-EEEEeCCCCCCCHHHHHHHHH
Confidence 4555555555566655442 3465 667789999999999877665
No 49
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=20.27 E-value=6.5e+02 Score=24.86 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=55.9
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC----CCCeEEEEEcCCCCHHHHhhcc-------------------ccchHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALYH----PRNQYAVHLDLEAPVEERLELA-------------------RGPTMVT 129 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~----p~n~y~IHvD~ks~~~~r~~l~-------------------gg~S~V~ 129 (398)
..+++..+|-+|+ ..+.|.++++.+.. +...=+|-||..|++...+.+. .|.+ .
T Consensus 29 ~~~~vSVVIPayN-ee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg--~ 105 (306)
T PRK13915 29 AGRTVSVVLPALN-EEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKG--E 105 (306)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHH--H
Confidence 3478999999999 68889998888852 2222344488877764221110 1211 2
Q ss_pred HHHHHHHHHHhcCCCccEEEEecCCcccccC--hhHHHHHhccCCCCcceE
Q 015902 130 NTLHAAAILFKEGGDWDWFINLSASDYPLVT--QDDLLHVLSTIPRNLNFI 178 (398)
Q Consensus 130 AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt--~~eI~~~fs~~~~g~nFI 178 (398)
|...++ +. .+-||++++.+.+.+..+ ...+.+.+.. +.+..++
T Consensus 106 A~~~g~----~~-a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~-~~~~~~V 150 (306)
T PRK13915 106 ALWRSL----AA-TTGDIVVFVDADLINFDPMFVPGLLGPLLT-DPGVHLV 150 (306)
T ss_pred HHHHHH----Hh-cCCCEEEEEeCccccCCHHHHHHHHHHHHh-CCCceEE
Confidence 222222 22 245899999998864433 3556665542 2344444
No 50
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.12 E-value=4.5e+02 Score=22.96 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=44.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCC--CeEEEEEcCCCCHHHHhh-----------cc-----ccchHHHHHHHHHHHHHh
Q 015902 79 YLISGSTGDGESLKRTLKALYHPR--NQYAVHLDLEAPVEERLE-----------LA-----RGPTMVTNTLHAAAILFK 140 (398)
Q Consensus 79 YLIlahk~d~~~l~rLl~aLy~p~--n~y~IHvD~ks~~~~r~~-----------l~-----gg~S~V~AtL~~~~~lL~ 140 (398)
.+|-+++ ..+.|.+.|+.+.... ..=+|=||..|++...+. +. ++.+...+.-.+ ++
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g----~~ 76 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESL----LQ 76 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHH----HH
Confidence 3566777 5678888888875421 223444555554321110 10 333443333333 22
Q ss_pred cCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 141 EGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 141 ~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
. .+.+|+++|.+.|... .+.|.+.++
T Consensus 77 ~-~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 77 A-ADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred h-CCCCEEEEECCCcccC--hhHHHHHHH
Confidence 2 4578999999998875 344444443
Done!