Query 015902
Match_columns 398
No_of_seqs 264 out of 821
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1E-58 3.5E-63 470.2 22.1 257 73-341 82-387 (391)
2 2fy7_A Beta-1,4-galactosyltran 56.3 54 0.0018 30.8 9.6 77 73-160 63-145 (287)
3 4hg6_A Cellulose synthase subu 52.6 1.8E+02 0.0062 31.2 14.2 42 74-115 139-184 (802)
4 2z86_A Chondroitin synthase; G 47.5 69 0.0024 32.8 9.5 90 75-170 93-201 (625)
5 1qg8_A Protein (spore coat pol 44.9 1.1E+02 0.0039 26.5 9.5 97 75-178 1-122 (255)
6 4fix_A UDP-galactofuranosyl tr 40.6 97 0.0033 32.6 9.5 95 72-170 177-295 (657)
7 3bcv_A Putative glycosyltransf 36.6 1.4E+02 0.0049 25.6 8.6 77 74-158 4-98 (240)
8 3ckj_A Putative uncharacterize 31.8 1.8E+02 0.006 27.2 8.9 98 73-178 46-166 (329)
9 2vsh_A TARI, 2-C-methyl-D-eryt 23.7 1.1E+02 0.0038 26.5 5.6 47 123-170 82-130 (236)
10 3f1y_A Mannosyl-3-phosphoglyce 23.0 1E+02 0.0035 30.2 5.6 99 74-179 93-215 (387)
11 2ffu_A Ppgalnact-2, polypeptid 22.4 2.8E+02 0.0097 27.3 8.9 92 73-170 64-173 (501)
12 3ku3_A Hemagglutinin HA1 chain 21.6 41 0.0014 32.7 2.2 44 142-186 75-124 (327)
13 1iio_A Conserved hypothetical 21.5 26 0.0009 27.4 0.7 19 151-169 20-38 (84)
14 1jsd_A Haemagglutinin (HA1 cha 21.5 46 0.0016 32.2 2.6 44 142-186 73-122 (319)
15 1vpa_A 2-C-methyl-D-erythritol 20.6 1.4E+02 0.0046 26.1 5.5 44 123-169 87-130 (234)
16 2d7i_A Polypeptide N-acetylgal 20.4 2.1E+02 0.0071 29.2 7.5 92 74-170 111-223 (570)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1e-58 Score=470.16 Aligned_cols=257 Identities=23% Similarity=0.314 Sum_probs=217.2
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------ccchHHHHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------RGPTMVTNTL 132 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------gg~S~V~AtL 132 (398)
.+|||||+|++|+ |+++++||++++|||+|+||||+|+|++..++..+. ||+|||+|+|
T Consensus 82 ~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l 160 (391)
T 2gak_A 82 VGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKADL 160 (391)
T ss_dssp HTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHH
T ss_pred cCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHHHH
Confidence 3599999999998 899999999999999999999999999876432210 9999999999
Q ss_pred HHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeeccc--ceecCCCcccccccccc
Q 015902 133 HAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAK--PVIIDPGLYTVQKSDVF 210 (398)
Q Consensus 133 ~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~--~~i~dpgly~~~k~~~~ 210 (398)
+||+.||+...+|+|||||||+||||+|+++|+++|+.+ +|+|||++.+..+|++. |++ +.+.+++++ .
T Consensus 161 ~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~-------~ 231 (391)
T 2gak_A 161 NCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT-------N 231 (391)
T ss_dssp HHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE-------E
T ss_pred HHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee-------e
Confidence 999999997779999999999999999999999999875 78999999887788654 322 223344332 2
Q ss_pred cccccCCCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHhcCCCCCCChhhhhhhccc---------ccccccc
Q 015902 211 WVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNA---------EEFRNTT 281 (398)
Q Consensus 211 ~~~~kR~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf~~t~~pDE~fFqTll~Ns---------~~f~~~~ 281 (398)
+..++|.+|.++++|+|||||+|||+||+||++ |++++.+++||+++++|||+||||++.+. ..|++++
T Consensus 232 ~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~ 309 (391)
T 2gak_A 232 TGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSD 309 (391)
T ss_dssp EEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCT
T ss_pred ecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCcccccccccccc
Confidence 234567789899999999999999999999998 56678899999999999999999998764 2355667
Q ss_pred ccCceeEEecCCCCC------CCCc----------cCCHhhHHHHhcCCCcEEecCCC--ChhHHHHHHHHHhCCCCC
Q 015902 282 VNHDLHFISWDNPPK------QHPH----------FLNVDDYQRMVDSNAPFARKFGR--NEPVLDKIDSELLGRIAD 341 (398)
Q Consensus 282 vn~~LRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~~lFARKF~~--d~~vld~Id~~ll~r~~~ 341 (398)
+++++|||+|++..+ .||. +++.+|+++|.+|+++|||||++ |++|++|||+.|.+|+..
T Consensus 310 ~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l~~r~~~ 387 (391)
T 2gak_A 310 MNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRKALE 387 (391)
T ss_dssp TTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHHhhhhhc
Confidence 899999999984221 1443 79999999999999999999997 689999999999888654
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=56.31 E-value=54 Score=30.77 Aligned_cols=77 Identities=14% Similarity=0.013 Sum_probs=49.0
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHc------CCCCeEEEEEcCCCCHHHHhhccccchHHHHHHHHHHHHHhcCCCcc
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALY------HPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWD 146 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy------~p~n~y~IHvD~ks~~~~r~~l~gg~S~V~AtL~~~~~lL~~~~~wd 146 (398)
+.++++.+|.+++ ..+.|.++|+.|. .++..+ |-||...+ +++....|.=.++..+++. ...+
T Consensus 63 ~~~~VSIIIP~yN-~~~~L~~~L~sl~~~l~q~~~~~EI-iVVdds~d--------~~f~~a~a~N~G~~~al~~-A~gd 131 (287)
T 2fy7_A 63 SPHKVAIIIPFRN-RQEHLKYWLYYLHPVLQRQQLDYGI-YVINQAGD--------TIFNRAKLLNVGFQEALKD-YDYT 131 (287)
T ss_dssp CSCEEEEEEEESS-CHHHHHHHHHHHHHHHHHTTCEEEE-EEEEECSS--------SCCCHHHHHHHHHHHHHHH-SCCC
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHHHHHhcCCceE-EEEEeCCC--------CccchhhhhhhHHHHHHHh-CCCC
Confidence 3579999999998 6999999999886 222233 33443222 2333222222233344443 4689
Q ss_pred EEEEecCCcccccC
Q 015902 147 WFINLSASDYPLVT 160 (398)
Q Consensus 147 yfi~LSg~DyPLkt 160 (398)
|++++.+.+.|...
T Consensus 132 ~i~flD~D~i~~~d 145 (287)
T 2fy7_A 132 CFVFSDVDLIPMND 145 (287)
T ss_dssp EEEEECTTEEESBT
T ss_pred EEEEECCCcccCCC
Confidence 99999999998876
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=52.64 E-value=1.8e+02 Score=31.16 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=27.7
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHc---CCCC-eEEEEEcCCCCH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALY---HPRN-QYAVHLDLEAPV 115 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy---~p~n-~y~IHvD~ks~~ 115 (398)
.|++..+|-+++.+.+.+++.++++. .|+. .-+|=+|..+++
T Consensus 139 ~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD 184 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTD 184 (802)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHH
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCc
Confidence 47999999999854445588888883 2432 334556665544
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=47.49 E-value=69 Score=32.77 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC---CCeEEEEEcCCCCHHHHh---hc------c------ccchHHHHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYHP---RNQYAVHLDLEAPVEERL---EL------A------RGPTMVTNTLHAAA 136 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~p---~n~y~IHvD~ks~~~~r~---~l------~------gg~S~V~AtL~~~~ 136 (398)
|++..+|.+++ ..+.|.++|++|... .+.=+|=||..+++...+ ++ . .|.+...|--.+++
T Consensus 93 p~vsviIp~~n-~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~~~~i~~i~~~~~~~g~~~a~N~g~~ 171 (625)
T 2z86_A 93 DGLSIVIPTYN-RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLR 171 (625)
T ss_dssp CCEEEEEEESS-CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTTTSCEEEEEECCCSCCHHHHHHHHHH
T ss_pred CcEEEEEecCC-cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhhcCCeEEEEeCCCCcchhHHHHHHHH
Confidence 78999999998 689999999999532 233344455444432211 11 1 34444444444444
Q ss_pred HHHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 137 ILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 137 ~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
.+ .-+|+++|.+.+.+-.. .+.+...+..
T Consensus 172 ~a-----~g~~v~~lD~D~~~~~~~l~~~~~~~~~ 201 (625)
T 2z86_A 172 AA-----KYNYVAILDCDMAPNPLWVQSYMELLAV 201 (625)
T ss_dssp HC-----CSSEEEEECTTEEECTTHHHHHHHHHHH
T ss_pred hC-----CcCEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 32 45899999999998332 2344445543
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=44.93 E-value=1.1e+02 Score=26.55 Aligned_cols=97 Identities=7% Similarity=0.115 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCCHHHHhh---c------c----c---------cchHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYHP--RNQYAVHLDLEAPVEERLE---L------A----R---------GPTMVTN 130 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~p--~n~y~IHvD~ks~~~~r~~---l------~----g---------g~S~V~A 130 (398)
|+++.+|.+++ ..+.|.++|+.|... .+.=+|=||..|++...+. + . . ..+...|
T Consensus 1 p~vSViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a 79 (255)
T 1qg8_A 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred CeEEEEEEcCC-CHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccCHHHH
Confidence 57889999998 579999999998532 1333555676666542211 1 1 2 2333333
Q ss_pred HHHHHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhccCCCCcceE
Q 015902 131 TLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLSTIPRNLNFI 178 (398)
Q Consensus 131 tL~~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~~~~g~nFI 178 (398)
--.+++. ..-+|++.|.+.|++... .+.+...+.+. .+...+
T Consensus 80 ~N~gi~~-----a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~-~~~~~v 122 (255)
T 1qg8_A 80 INQAIEM-----AEGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVI 122 (255)
T ss_dssp HHHHHHH-----CCCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEE
T ss_pred HHHHHHH-----cCCCEEEEeCCCCccChHHHHHHHHHHHhC-CCceEE
Confidence 3333332 245899999999997432 34445555542 234444
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=40.61 E-value=97 Score=32.65 Aligned_cols=95 Identities=11% Similarity=-0.058 Sum_probs=61.0
Q ss_pred CCCCcEEEEEEecCCCHHHHHHHHHHHcCC-----CCeEEEEEcCCCCHHH-------H-----hhcc------ccchHH
Q 015902 72 EKIPRLAYLISGSTGDGESLKRTLKALYHP-----RNQYAVHLDLEAPVEE-------R-----LELA------RGPTMV 128 (398)
Q Consensus 72 ~~~~kiAYLIlahk~d~~~l~rLl~aLy~p-----~n~y~IHvD~ks~~~~-------r-----~~l~------gg~S~V 128 (398)
+.+++++.+|.+++ ..+.+.+.|++|... .+.=+|=||..|++.. . ..+. .|++
T Consensus 177 ~~~pkVSVVIptYN-~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~N~G~a-- 253 (657)
T 4fix_A 177 PGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQPNLGGS-- 253 (657)
T ss_dssp CSCCCEEEECCBSS-CHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECCCCHHH--
T ss_pred CCCCeEEEEEEecC-CHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECCCCCHH--
Confidence 34589999999999 589999999999752 3334777888775411 0 1121 3332
Q ss_pred HHHHHHHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 129 TNTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 129 ~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
.|-=.+++.+... .+.||+++|...+.+-.. .+.+++++..
T Consensus 254 ~a~N~Gl~~A~g~-~~~dyIlfLD~D~~~~pd~L~~ll~~l~~ 295 (657)
T 4fix_A 254 GGYSRVMYEALKN-TDCQQILFMDDDIRLEPDSILRVLAMHRF 295 (657)
T ss_dssp HHHHHHHHHHHHH-CCCSEEEEECSSEEECTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCEEEEECCCCccChhHHHHHHHHHHh
Confidence 3444566666653 368999999988877522 2344555543
No 7
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=36.64 E-value=1.4e+02 Score=25.57 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=46.6
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcCC--CCeEEEEEcCCCCHHHHh---h-------cc------ccchHHHHHHHHH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALYHP--RNQYAVHLDLEAPVEERL---E-------LA------RGPTMVTNTLHAA 135 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy~p--~n~y~IHvD~ks~~~~r~---~-------l~------gg~S~V~AtL~~~ 135 (398)
.|++..+|.+|+ ..+.|.+.|+.|... .+.=+|=||..|++...+ + +. +|.+ .|-=.++
T Consensus 4 ~p~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~--~a~N~g~ 80 (240)
T 3bcv_A 4 IPKVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLG--MACNSGL 80 (240)
T ss_dssp CCSEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHH--HHHHHHH
T ss_pred CCcEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCCChH--HHHHHHH
Confidence 368999999998 579999999998532 133344566666543211 1 11 4433 2222233
Q ss_pred HHHHhcCCCccEEEEecCCcccc
Q 015902 136 AILFKEGGDWDWFINLSASDYPL 158 (398)
Q Consensus 136 ~~lL~~~~~wdyfi~LSg~DyPL 158 (398)
+.+ .-+|+++|.+.|++-
T Consensus 81 ~~a-----~g~~i~~lD~Dd~~~ 98 (240)
T 3bcv_A 81 DVA-----TGEYVAFCDSDDYVD 98 (240)
T ss_dssp HHC-----CSSEEEECCTTCCCC
T ss_pred HHc-----CCCEEEEECCCCcCC
Confidence 322 348999999999863
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=31.79 E-value=1.8e+02 Score=27.17 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=57.5
Q ss_pred CCCcEEEEEEecCCCHHHHHHHHHHHcC---CC-CeEEEEEcCCCCHHHHhhc-----------------cccchHHHHH
Q 015902 73 KIPRLAYLISGSTGDGESLKRTLKALYH---PR-NQYAVHLDLEAPVEERLEL-----------------ARGPTMVTNT 131 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~---p~-n~y~IHvD~ks~~~~r~~l-----------------~gg~S~V~At 131 (398)
..|++..+|-+|+ ..+.|.++|+.|.. +. ..++| ||..|++...+.+ ....+.-.|.
T Consensus 46 ~~~~vSViIp~yN-~~~~l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~ 123 (329)
T 3ckj_A 46 AGRTISVVLPALD-EEDTIGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEAL 123 (329)
T ss_dssp TTCCEEEEEEESS-CTTTHHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCTTSCCCCSHHHHH
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeeccCCCCCCHHHHH
Confidence 3589999999999 67899999998864 43 34544 7766654321111 1111223333
Q ss_pred HHHHHHHHhcCCCccEEEEecCCcccc--cChhHHHHHhccCCCCcceE
Q 015902 132 LHAAAILFKEGGDWDWFINLSASDYPL--VTQDDLLHVLSTIPRNLNFI 178 (398)
Q Consensus 132 L~~~~~lL~~~~~wdyfi~LSg~DyPL--kt~~eI~~~fs~~~~g~nFI 178 (398)
-.+++.+ .-+|++.|.+.|..+ -....+.+.+... .+...+
T Consensus 124 n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~-~~~~~v 166 (329)
T 3ckj_A 124 WRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLLTG-DGVHLV 166 (329)
T ss_dssp HHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHHSC-SSCCEE
T ss_pred HHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHHhC-CCccEE
Confidence 3333322 348999999999833 2345666665432 344544
No 9
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=23.72 E-value=1.1e+02 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHHHHHhcCC--CccEEEEecCCcccccChhHHHHHhcc
Q 015902 123 RGPTMVTNTLHAAAILFKEGG--DWDWFINLSASDYPLVTQDDLLHVLST 170 (398)
Q Consensus 123 gg~S~V~AtL~~~~~lL~~~~--~wdyfi~LSg~DyPLkt~~eI~~~fs~ 170 (398)
||-++..+..++++.+-+... +.++++.+ ..|.|+.+.+.|.+.++.
T Consensus 82 ~~~~~~~~i~~~l~~~~~~~~~~~~~~vlv~-~~D~P~~~~~~i~~l~~~ 130 (236)
T 2vsh_A 82 GGADRNTSIKNIIEAIDAYRPLTPEDIVVTH-DSVRPFITLRMIQDNIQL 130 (236)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCCCTTCEEEEE-ETTCTTCCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhccCCCCCEEEEe-cCCcccCCHHHHHHHHHH
Confidence 566677777777766533112 34665544 679999999888777653
No 10
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=23.00 E-value=1e+02 Score=30.19 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=56.9
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcC-----CCCeEEEEEcCCCCHHHHhhcc-----------------ccchHHHHH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALYH-----PRNQYAVHLDLEAPVEERLELA-----------------RGPTMVTNT 131 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy~-----p~n~y~IHvD~ks~~~~r~~l~-----------------gg~S~V~At 131 (398)
.|++..+|-+++ ..+.|.++|+.|.. +.+.=+|=||..|++...+.+. +....-.|.
T Consensus 93 ~p~vSVVIP~yN-e~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~ 171 (387)
T 3f1y_A 93 GLTVSAVLPSRN-VADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAM 171 (387)
T ss_dssp TCCEEEEEEESS-CTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHH
T ss_pred CCeEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHHH
Confidence 589999999998 57888888888742 3344455566666543211110 122233333
Q ss_pred HHHHHHHHhcCCCccEEEEecCCccc--ccChhHHHHHhccCCCCcceEe
Q 015902 132 LHAAAILFKEGGDWDWFINLSASDYP--LVTQDDLLHVLSTIPRNLNFIE 179 (398)
Q Consensus 132 L~~~~~lL~~~~~wdyfi~LSg~DyP--Lkt~~eI~~~fs~~~~g~nFIe 179 (398)
-.+ ++. ...||++.|.+.+.. -.-...+.+.+.. +.+..++-
T Consensus 172 n~G----~~~-A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~-~p~~d~v~ 215 (387)
T 3f1y_A 172 WRA----LSV-TRGDLVLYIDADTRDFRPQLAYGVLGPVLE-VPGVRFVK 215 (387)
T ss_dssp HHH----TTT-CCSSEEEECCTTCSSCCTHHHHTTHHHHHH-STTCCEEE
T ss_pred HHH----HHh-cCCCEEEEEcCCCCcCCHHHHHHHHHHHHH-CCCceEEE
Confidence 333 332 356899999998873 3334555555543 22455553
No 11
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=22.45 E-value=2.8e+02 Score=27.34 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCCcEEEEEEecCCCHH-HHHHHHHHHcC--CCC--eEEEEEcCCCCHHHHhh-cc-----------ccchHHHHHHHHH
Q 015902 73 KIPRLAYLISGSTGDGE-SLKRTLKALYH--PRN--QYAVHLDLEAPVEERLE-LA-----------RGPTMVTNTLHAA 135 (398)
Q Consensus 73 ~~~kiAYLIlahk~d~~-~l~rLl~aLy~--p~n--~y~IHvD~ks~~~~r~~-l~-----------gg~S~V~AtL~~~ 135 (398)
..|++..+|.+|+ ..+ .|.+.|+.+.. +.+ .=+|=||..|++..... ++ ...+...|--.++
T Consensus 64 ~~p~vSVIIp~yN-~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~~v~vi~~~~n~G~~~A~N~G~ 142 (501)
T 2ffu_A 64 DLPATSVVITFHN-EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGA 142 (501)
T ss_dssp SCCCEEEEEEESS-CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBTTEEEEECSSCCHHHHHHHHHH
T ss_pred CCCCEEEEEEeCc-CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCCCEEEEECCCCcCHHHHHHHHH
Confidence 3478999999998 455 88888888742 233 23555666665532111 11 2334555555555
Q ss_pred HHHHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 136 AILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 136 ~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
+.+ .-||+++|.+.+.+-.. .+.+++.+.+
T Consensus 143 ~~A-----~gd~i~flD~D~~~~p~~L~~ll~~~~~ 173 (501)
T 2ffu_A 143 DAA-----QAKVLTFLDSHCECNEHWLEPLLERVAE 173 (501)
T ss_dssp HHC-----CSSEEEECCSSEEECTTCHHHHHHHHHH
T ss_pred Hhc-----CCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 543 35899999998876322 2344445543
No 12
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=21.62 E-value=41 Score=32.68 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=32.7
Q ss_pred CCCccEEEE----ecCCccc--ccChhHHHHHhccCCCCcceEeeccCCCc
Q 015902 142 GGDWDWFIN----LSASDYP--LVTQDDLLHVLSTIPRNLNFIEHTSDIGW 186 (398)
Q Consensus 142 ~~~wdyfi~----LSg~DyP--Lkt~~eI~~~fs~~~~g~nFIe~~~~~~w 186 (398)
...|+|+|= ..|.||| +...+||.+.|++. ++.++|+..+...|
T Consensus 75 ~~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~-~~~erieifp~~~W 124 (327)
T 3ku3_A 75 VPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSV-KHFEKVKILPKDRW 124 (327)
T ss_dssp CCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTE-EEEEEECCSCGGGC
T ss_pred CceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhcc-CCceeEEecCCCcc
Confidence 368999998 4567999 66788898999864 56788876543334
No 13
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=21.47 E-value=26 Score=27.44 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=16.3
Q ss_pred ecCCcccccChhHHHHHhc
Q 015902 151 LSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 151 LSg~DyPLkt~~eI~~~fs 169 (398)
+.|.+||++|+.||...|=
T Consensus 20 ~~~a~FPI~s~~EL~~AlP 38 (84)
T 1iio_A 20 LAGADFPINSPEELMAALP 38 (84)
T ss_dssp HTTSSSTTBHHHHHHHHCT
T ss_pred HcCCCCCCCCHHHHHHhCC
Confidence 3478999999999999983
No 14
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=21.45 E-value=46 Score=32.22 Aligned_cols=44 Identities=20% Similarity=0.518 Sum_probs=35.1
Q ss_pred CCCccEEEEe----cCCccc--ccChhHHHHHhccCCCCcceEeeccCCCc
Q 015902 142 GGDWDWFINL----SASDYP--LVTQDDLLHVLSTIPRNLNFIEHTSDIGW 186 (398)
Q Consensus 142 ~~~wdyfi~L----Sg~DyP--Lkt~~eI~~~fs~~~~g~nFIe~~~~~~w 186 (398)
...|+|+|=- .|.||| +...+||.+.|++. ++.++++..+...|
T Consensus 73 ~~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~-~s~er~~~~p~~~W 122 (319)
T 1jsd_A 73 GREWSYIVERPSAVNGMCYPGNVENLEELRSLFSSA-SSYQRIQIFPDTIW 122 (319)
T ss_dssp CEECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHS-SEEEEEESSCGGGC
T ss_pred CCceEEEEeCCCCCCCcccCcccCCHHHHHHHHhcc-CccceEEecCCcee
Confidence 3679999984 578999 67889999999875 67888887765556
No 15
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=20.56 E-value=1.4e+02 Score=26.07 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=31.0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhc
Q 015902 123 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 123 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs 169 (398)
||-++..+...+++.+-.. +.++++.+ ..|.|+.+.+.|...+.
T Consensus 87 gg~~~~~sv~~al~~~~~~--~~~~vlv~-~~D~Pli~~~~i~~l~~ 130 (234)
T 1vpa_A 87 GGDTRSQSVRSALEFLEKF--SPSYVLVH-DSARPFLRKKHVSEVLR 130 (234)
T ss_dssp CCSSHHHHHHHHHHHHGGG--CCSEEEEE-ETTSCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhhc--CCCEEEEe-cCcccCCCHHHHHHHHH
Confidence 7778888888777765221 34665554 56999999988877764
No 16
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=20.42 E-value=2.1e+02 Score=29.18 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCCHHHHHHHHHHHcC--CCC--eEEEEEcCCCCHHH-Hhh----------cc-----ccchHHHHHHH
Q 015902 74 IPRLAYLISGSTGDGESLKRTLKALYH--PRN--QYAVHLDLEAPVEE-RLE----------LA-----RGPTMVTNTLH 133 (398)
Q Consensus 74 ~~kiAYLIlahk~d~~~l~rLl~aLy~--p~n--~y~IHvD~ks~~~~-r~~----------l~-----gg~S~V~AtL~ 133 (398)
.|++..+|.+|+...+.|.+.|+.+.. +.+ .=+|=||..|++.. .+. +. .......|--.
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~ 190 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRML 190 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHH
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHH
Confidence 478999999999423889999888842 333 13555666665433 111 11 23445566665
Q ss_pred HHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 134 AAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 134 ~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
+++.+ .-+|+++|.+.+.+-.. .+.+++.+..
T Consensus 191 G~~~A-----~gd~i~fLD~D~~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 191 GASVA-----TGDVITFLDSHCEANVNWLPPLLDRIAR 223 (570)
T ss_dssp HHHHC-----CSSEEEECCSSEEECTTCSHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEEcCCccccccHHHHHHHHHHh
Confidence 65543 24899999999988332 3445566654
Done!