Query 015902
Match_columns 398
No_of_seqs 264 out of 821
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015902.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015902hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 66.4 22 0.0016 29.3 10.8 97 75-179 1-123 (255)
2 d1omza_ c.68.1.15 (A:) Alpha-1 55.6 8.9 0.00065 30.5 5.8 86 76-170 4-108 (265)
3 d1iioa_ a.39.4.1 (A:) Hypothet 25.5 9.2 0.00067 28.1 0.7 19 151-169 20-38 (84)
4 d1jsda_ b.19.1.2 (A:) Hemagglu 18.8 22 0.0016 32.2 1.9 44 142-186 73-122 (317)
5 d1vpaa_ c.68.1.13 (A:) 4-dipho 18.2 2.1E+02 0.015 22.6 8.3 79 89-170 32-121 (221)
6 d2dpwa1 c.68.1.19 (A:1-231) Un 14.0 1E+02 0.0075 24.7 5.2 76 89-171 33-109 (231)
7 d1fo8a_ c.68.1.10 (A:) N-acety 13.7 1.8E+02 0.013 25.9 7.1 78 77-157 4-112 (343)
8 d3beda1 c.54.1.1 (A:1-132) PTS 13.5 1.7E+02 0.012 22.1 6.0 76 75-159 1-97 (132)
9 d1xhba2 c.68.1.17 (A:95-422) P 13.0 3.4E+02 0.025 22.3 10.2 89 74-170 21-134 (328)
10 d1eyra_ c.68.1.13 (A:) CMP acy 12.7 1.7E+02 0.013 22.6 6.2 45 123-171 78-122 (225)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=66.39 E-value=22 Score=29.31 Aligned_cols=97 Identities=6% Similarity=0.101 Sum_probs=57.8
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCCHHHHhhcc----------------------ccchHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERLELA----------------------RGPTMVT 129 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y~IHvD~ks~~~~r~~l~----------------------gg~S~V~ 129 (398)
|++..+|.+++ ....|++.|+.+- .++..++|+-| .|++...+-++ ...+ +.
T Consensus 1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~~eiivvdd-~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g-~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDD-NSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTR-YA 77 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEEC-SCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCH-HH
T ss_pred CEEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEEEEC-CCCccHHHHHHHhhhhcccccccccccccccccccch-hc
Confidence 68899999998 4788999999874 24456655555 45444322111 1111 11
Q ss_pred HHHHHHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhccCCCCcceEe
Q 015902 130 NTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLSTIPRNLNFIE 179 (398)
Q Consensus 130 AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~~~~g~nFIe 179 (398)
+ ++..+++. .+-+|++.|.+.|++... .+.+.++|... .+..++.
T Consensus 78 ~---a~N~gi~~-a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v~ 123 (255)
T d1qg8a_ 78 A---LINQAIEM-AEGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVIY 123 (255)
T ss_dssp H---HHHHHHHH-CCCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEEE
T ss_pred c---cccccccc-cccccccccccccccccchHHHHHHHHHhC-CCCCeEe
Confidence 1 22233443 245899999999999765 44555666553 3455553
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.63 E-value=8.9 Score=30.53 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=53.5
Q ss_pred cEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCCHHHHh---hcc------------ccchHHHHHHHHHHH
Q 015902 76 RLAYLISGSTGDGESLKRTLKALY---HPRNQYAVHLDLEAPVEERL---ELA------------RGPTMVTNTLHAAAI 137 (398)
Q Consensus 76 kiAYLIlahk~d~~~l~rLl~aLy---~p~n~y~IHvD~ks~~~~r~---~l~------------gg~S~V~AtL~~~~~ 137 (398)
++..+|.+|+ .++.|+++|+.|- ++ +.++|..|..+++.... ... +|.+. |-- .
T Consensus 4 ~~tvii~tyn-~~~~l~~~l~sl~~q~~~-~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~--a~n----~ 75 (265)
T d1omza_ 4 SFTLIMQTYN-RTDLLLRLLNHYQAVPSL-HKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMR--NRL----Q 75 (265)
T ss_dssp CEEEEEEESS-CHHHHHHHHHHHTTSTTE-EEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGG--GGG----S
T ss_pred cEEEEEEcCC-CHHHHHHHHHHHHcCCCc-CeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchh--hhh----h
Confidence 5788999999 6999999999995 23 35677777766543211 000 33332 111 2
Q ss_pred HHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 138 LFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 138 lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
+++. .+=||++.|-+.|.+-.. .+.+++.+..
T Consensus 76 ~~~~-a~ge~i~~lD~D~~~~~~~l~~l~~~~~~ 108 (265)
T d1omza_ 76 VFPE-VETNAVLMVDDDTLISAQDLVFAFSIWQQ 108 (265)
T ss_dssp CCTT-CCSSEEEEECTTEEECHHHHHHHHHHHTT
T ss_pred hHHh-CCcCEEEEeCcccCCCHHHHHHHHHHHHh
Confidence 2332 345899999999988653 4445556654
No 3
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.51 E-value=9.2 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=16.4
Q ss_pred ecCCcccccChhHHHHHhc
Q 015902 151 LSASDYPLVTQDDLLHVLS 169 (398)
Q Consensus 151 LSg~DyPLkt~~eI~~~fs 169 (398)
+.|.+||+.|++||...|=
T Consensus 20 f~gA~FPI~s~~eL~~alP 38 (84)
T d1iioa_ 20 LAGADFPINSPEELMAALP 38 (84)
T ss_dssp HTTSSSTTBHHHHHHHHCT
T ss_pred HcCCCCCCCCHHHHHHhCC
Confidence 4578999999999999983
No 4
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=18.77 E-value=22 Score=32.19 Aligned_cols=44 Identities=20% Similarity=0.514 Sum_probs=34.5
Q ss_pred CCCccEEEEec----CCccc--ccChhHHHHHhccCCCCcceEeeccCCCc
Q 015902 142 GGDWDWFINLS----ASDYP--LVTQDDLLHVLSTIPRNLNFIEHTSDIGW 186 (398)
Q Consensus 142 ~~~wdyfi~LS----g~DyP--Lkt~~eI~~~fs~~~~g~nFIe~~~~~~w 186 (398)
...|||||=-+ |-||| +...++|.+.|++. ++.++|+..+...|
T Consensus 73 ~~~WsyivErp~a~ng~CYPg~~~d~eeLR~l~ss~-~~~Er~e~~~~~~w 122 (317)
T d1jsda_ 73 GREWSYIVERPSAVNGMCYPGNVENLEELRSLFSSA-SSYQRIQIFPDTIW 122 (317)
T ss_dssp CEECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHS-SEEEEEESSCGGGC
T ss_pred cCceEEEEecCCcCCCcccccccCCHHHHHHHHhcc-CceeeEEecCcccc
Confidence 35799999864 67999 77778888889875 68999987665555
No 5
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}
Probab=18.19 E-value=2.1e+02 Score=22.56 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=48.4
Q ss_pred HHHHHHHHHHc-C-CCCeEEEEEcCCCCHHHHhhc---------cccchHHHHHHHHHHHHHhcCCCccEEEEecCCccc
Q 015902 89 ESLKRTLKALY-H-PRNQYAVHLDLEAPVEERLEL---------ARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYP 157 (398)
Q Consensus 89 ~~l~rLl~aLy-~-p~n~y~IHvD~ks~~~~r~~l---------~gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyP 157 (398)
..+...++++. . .-..++|=.+.+........+ .||.+...+..+++..+.. ...++++.+- .|-|
T Consensus 32 pli~~~i~~~~~~~~~~~Iivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~v~~~~-~d~p 108 (221)
T d1vpaa_ 32 MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEK--FSPSYVLVHD-SARP 108 (221)
T ss_dssp ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCCCTTEEEEEECCSSHHHHHHHHHHHHGG--GCCSEEEEEE-TTSC
T ss_pred EHHHHHHHHHHhccccccceEEecchhhhHHHhhhccccccccccccccccchHHHHHHHHHh--cCCCcEEEec-cccc
Confidence 44566666653 2 235566655433222111111 1777888888888887754 3467766654 4999
Q ss_pred ccChhHHHHHhcc
Q 015902 158 LVTQDDLLHVLST 170 (398)
Q Consensus 158 Lkt~~eI~~~fs~ 170 (398)
+.+.+.+...+..
T Consensus 109 ~~~~~~i~~li~~ 121 (221)
T d1vpaa_ 109 FLRKKHVSEVLRR 121 (221)
T ss_dssp CCCHHHHHHHHHH
T ss_pred cccHHHHHhhhhh
Confidence 9999988887754
No 6
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}
Probab=13.99 E-value=1e+02 Score=24.68 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCC-CCeEEEEEcCCCCHHHHhhccccchHHHHHHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHH
Q 015902 89 ESLKRTLKALYHP-RNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHV 167 (398)
Q Consensus 89 ~~l~rLl~aLy~p-~n~y~IHvD~ks~~~~r~~l~gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~ 167 (398)
..|.+.++++..- -..++|=.+.+..........++.+.+.+.. .+++.-. ++++++ ..|.|+.+.+.|.+.
T Consensus 33 pli~~~~~~l~~~~~~~vvv~~~~~~~~~~~~~~~~~~~~~~~v~----~al~~~~--~~~lv~-~~D~P~i~~~~i~~l 105 (231)
T d2dpwa1 33 PMVEWVLEALYAAGLSPVYVGENPGLVPAPALTLPDRGGLLENLE----QALEHVE--GRVLVA-TGDIPHLTEEAVRFV 105 (231)
T ss_dssp ETHHHHHHHHHHTTCEEEEESCCSSCSSCCSEEECCCSSHHHHHH----HHHHTCC--SEEEEE-ETTCTTCCHHHHHHH
T ss_pred eHHHHHHHHHHhcCCCeEEeeeeccccceeeeecccchHHHHHHH----HHHHhhc--CceEEe-eCCCccCCHHHHHHH
Confidence 5666777777533 3445543333321111111115556555544 3444322 456655 458999999999888
Q ss_pred hccC
Q 015902 168 LSTI 171 (398)
Q Consensus 168 fs~~ 171 (398)
++..
T Consensus 106 ~~~~ 109 (231)
T d2dpwa1 106 LDKA 109 (231)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
No 7
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=13.68 E-value=1.8e+02 Score=25.95 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=49.4
Q ss_pred EEEEEEecCCCHHHHHHHHHHH--cCCCC---eEEEEEcCCCCHHHH------hhcc--------------------ccc
Q 015902 77 LAYLISGSTGDGESLKRTLKAL--YHPRN---QYAVHLDLEAPVEER------LELA--------------------RGP 125 (398)
Q Consensus 77 iAYLIlahk~d~~~l~rLl~aL--y~p~n---~y~IHvD~ks~~~~r------~~l~--------------------gg~ 125 (398)
++.||.|++. + .++|+|++| +.|.. .++|-.|..-+.... ..+. |-+
T Consensus 4 iPVlv~a~NR-P-~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~ 81 (343)
T d1fo8a_ 4 IPILVIACDR-S-TVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CCEEEEESSC-T-THHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred ccEEEEEcCH-H-HHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHHHHHHhcCCccccceecchhhcccchh
Confidence 5778999985 6 589999988 34543 599999975432110 1111 223
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEecCCccc
Q 015902 126 TMVTNTLHAAAILFKEGGDWDWFINLSASDYP 157 (398)
Q Consensus 126 S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyP 157 (398)
.+-+.-..|+..++.. .+++.+|.|-....|
T Consensus 82 giarhy~~AL~~~F~~-~~~~~~IiLEDDl~~ 112 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHN-FNYPAAVVVEDDLEV 112 (343)
T ss_dssp HHHHHHHHHHHHHHTT-SCCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhcc-cCCceEEEEecCcee
Confidence 3444455566666653 468999999777666
No 8
>d3beda1 c.54.1.1 (A:1-132) PTS system, IIA subunit {Enterococcus faecalis [TaxId: 1351]}
Probab=13.45 E-value=1.7e+02 Score=22.15 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCCHHHHHHHHHHHcCC-CCeEEEEEcCCCCHHHH-hhcc------------------cc-chHHHHHHH
Q 015902 75 PRLAYLISGSTGDGESLKRTLKALYHP-RNQYAVHLDLEAPVEER-LELA------------------RG-PTMVTNTLH 133 (398)
Q Consensus 75 ~kiAYLIlahk~d~~~l~rLl~aLy~p-~n~y~IHvD~ks~~~~r-~~l~------------------gg-~S~V~AtL~ 133 (398)
||...+|.+|.+=..-+..-++.+.-+ .|..+|.+....+.++. +++. || +..+++.+
T Consensus 1 Mk~kIii~sHG~~A~gl~~s~~~i~G~~~~i~~i~l~~~~~~~~~~~~l~~~~~~~~~~~vliltDl~GGTP~N~a~~~- 79 (132)
T d3beda1 1 MKPKLILMSHGRMAEETLASTQMIVGELADAAIVSMTAEDGLSGTQAKLAAILKEAGNVPTLVLADLKGGTPCNVAMMA- 79 (132)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHCTTCCCEEEEECTTTHHHHHHHHHHHHHHHHCSCCEEEEESSTTSHHHHHHHHH-
T ss_pred CCCCEEEEcCHHHHHHHHHHHHHHcCCcCCeEEEEcCCCCCHHHHHHHHHHHHhhCCCCCEEEEEecccCChhHHHHHH-
Confidence 667789999986567788888888744 57778888777665432 1111 44 44553322
Q ss_pred HHHHHHhcCCCccEEEEecCCccccc
Q 015902 134 AAAILFKEGGDWDWFINLSASDYPLV 159 (398)
Q Consensus 134 ~~~~lL~~~~~wdyfi~LSg~DyPLk 159 (398)
+.. .+-+..+||--+|+.
T Consensus 80 -----~~~---~~~v~visG~NLpml 97 (132)
T d3beda1 80 -----MGT---YPQLRVVAGLNLAMA 97 (132)
T ss_dssp -----TTT---CTTEEEEESCCHHHH
T ss_pred -----Hhc---CCCEEEEECCCHHHH
Confidence 322 223788999999975
No 9
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.04 E-value=3.4e+02 Score=22.31 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=54.2
Q ss_pred CCcEEEEEEecCCCH-HHHHHHHHHHc--CCCC--eEEEEEcCCCCHHHH-h---h--------cc-------ccchHHH
Q 015902 74 IPRLAYLISGSTGDG-ESLKRTLKALY--HPRN--QYAVHLDLEAPVEER-L---E--------LA-------RGPTMVT 129 (398)
Q Consensus 74 ~~kiAYLIlahk~d~-~~l~rLl~aLy--~p~n--~y~IHvD~ks~~~~r-~---~--------l~-------gg~S~V~ 129 (398)
-|.+..+|-+|+ +. ..|.|+|+++- .+.+ .=+|-||-.|++... . + +. .|++ .
T Consensus 21 ~P~vSIIIp~yN-e~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~i~vi~~~~n~G~~--~ 97 (328)
T d1xhba2 21 LPTTSVVIVFHN-EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLI--R 97 (328)
T ss_dssp CCCEEEEEEESS-CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHH--H
T ss_pred CCCEEEEEeccC-CcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCCeEEEEecccccch--H
Confidence 367899999998 44 56899998873 2223 236778877765321 0 1 11 3444 3
Q ss_pred HHHHHHHHHHhcCCCccEEEEecCCcccccC-hhHHHHHhcc
Q 015902 130 NTLHAAAILFKEGGDWDWFINLSASDYPLVT-QDDLLHVLST 170 (398)
Q Consensus 130 AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt-~~eI~~~fs~ 170 (398)
|-=.+++.+ .=+|++.|-+.|.+... .+.+...|..
T Consensus 98 a~N~Gi~~a-----~gd~i~flD~D~~~~p~~l~~l~~~~~~ 134 (328)
T d1xhba2 98 ARLKGAAVS-----RGQVITFLDAHCECTAGWLEPLLARIKH 134 (328)
T ss_dssp HHHHHHHHC-----CSSEEEEEESSEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHhh-----hcceeeecCcccccChhHHHHHHHHHhc
Confidence 333333322 34789999999988654 3556666765
No 10
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=12.71 E-value=1.7e+02 Score=22.62 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhccC
Q 015902 123 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTI 171 (398)
Q Consensus 123 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~ 171 (398)
++.+......++++.+ ..++|+++.+.|.. |+.+..+|.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~---~~~~d~ii~~~~~~-P~~~~~~I~~~i~~~ 122 (225)
T d1eyra_ 78 DTASSISGVIHALETI---GSNSGTVTLLQPTS-PLRTGAHIREAFSLF 122 (225)
T ss_dssp TTCCHHHHHHHHHHHH---TCCSEEEEECCTTC-TTCCHHHHHHHHTTC
T ss_pred ccccchhhcccccccc---ccccceEEEeeccc-cccccccccccceee
Confidence 4455666666666554 35689999997665 999999999988654
Done!