BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015903
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWA 116
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 18 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 73
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 74 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 113
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 21 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 76
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 77 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 116
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 126 RWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYG 185
R V+ G D VL +HG P+ +Y +R ++P ++ ++ IA D +G G S+KP
Sbjct: 18 RMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPD---- 73
Query: 186 FDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
DY D++V L++F+ + ++V LV+ + S + +A
Sbjct: 74 LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWA 113
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 131 ESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTL 190
E+G D VL +HG P+ ++ +R +LP++S H IA D +GFG S KP Y F
Sbjct: 23 ETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRF---- 78
Query: 191 DEYVASLESFVNEIANDKVSLVVQGY 216
++V L++F+ + LV Q +
Sbjct: 79 FDHVRYLDAFIEQRGVTSAYLVAQDW 104
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 131 ESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTL 190
E+G D VL +HG P+ ++ +R +LP++S H IA D +GFG S KP Y F
Sbjct: 23 ETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRF---- 78
Query: 191 DEYVASLESFVNEIANDKVSLVVQGY 216
++V L++F+ + LV Q +
Sbjct: 79 FDHVRYLDAFIEQRGVTSAYLVAQDW 104
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 131 ESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTL 190
E+G D VL +HG P+ ++ +R +LP++S H IA D +GFG S KP Y F
Sbjct: 23 ETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRF---- 78
Query: 191 DEYVASLESFVNEIANDKVSLVVQGY 216
++V L++F+ + LV Q +
Sbjct: 79 FDHVRYLDAFIEQRGVTSAYLVAQDW 104
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 34/281 (12%)
Query: 125 FRWFCVESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQP 182
R ++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP
Sbjct: 34 LRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVD 93
Query: 183 GYGFDYTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNP 240
DYT + + L + + + ++LVVQ G F + + A
Sbjct: 94 EE--DYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLII----- 146
Query: 241 PLTAKHANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-- 298
+ A P T FS F+ D A L + P ++ D M +P L
Sbjct: 147 -MNAXLMTDPVTQPAFSAFVTQ---PADGFTAWKYDLVT--PSDLRLDQFMKRWAPTLTE 200
Query: 299 ---SSGSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRD 346
S+ ++ F T+ G++K K + + + W T + G +D
Sbjct: 201 AEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIGMKD 260
Query: 347 RWLNNDGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
+ L D + N E +E+ AGH VQE GE++ +
Sbjct: 261 KLLGPDVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 130 VESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQPGYGFD 187
++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP D
Sbjct: 39 LDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEE--D 96
Query: 188 YTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNPPLTAK 245
YT + + L + + + ++LVVQ G F + + A + A
Sbjct: 97 YTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLII------MNAC 150
Query: 246 HANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-----SS 300
P T FS F+ D A L + P ++ D M +P L S+
Sbjct: 151 LMTDPVTQPAFSAFVTQ---PADGFTAYKYDLVT--PSDLRLDQFMKRWAPTLTEAEASA 205
Query: 301 GSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRDRWLNN 351
++ F T+ G++K K + + + W T + G +D+ L
Sbjct: 206 YAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKLLGP 265
Query: 352 DGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
D + N E +E+ AGH VQE GE++ +
Sbjct: 266 DVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 130 VESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQPGYGFD 187
++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP D
Sbjct: 39 LDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEE--D 96
Query: 188 YTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNPPLTAK 245
YT + + L + + + ++LVVQ G F + + A + A
Sbjct: 97 YTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRLII------MNAC 150
Query: 246 HANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-----SS 300
P T FS F+ D A L + P ++ D M +P L S+
Sbjct: 151 LMTDPVTQPAFSAFVTQ---PADGFTAWKYDLVT--PSDLRLDQFMKRWAPTLTEAEASA 205
Query: 301 GSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRDRWLNN 351
++ F T+ G++K K + + + W T + G +D+ L
Sbjct: 206 YAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKLLGP 265
Query: 352 DGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
D + N E +E+ AGH VQE GE++ +
Sbjct: 266 DVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 130 VESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQPGYGFD 187
++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP D
Sbjct: 39 LDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEE--D 96
Query: 188 YTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNPPLTAK 245
YT + + L + + + ++LVVQ G F + + A + A
Sbjct: 97 YTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLII------MNAC 150
Query: 246 HANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-----SS 300
P T FS F+ D A L + P ++ D M +P L S+
Sbjct: 151 LMTDPVTQPAFSAFVTQ---PADGFTAWKYDLVT--PSDLRLDQFMKRWAPTLTEAEASA 205
Query: 301 GSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRDRWLNN 351
++ F T+ G++K K + + + W T + G +D+ L
Sbjct: 206 YAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKLLGP 265
Query: 352 DGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
D + N E +E+ AGH VQE GE++ +
Sbjct: 266 DVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 130 VESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQPGYGFD 187
++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP D
Sbjct: 39 LDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEE--D 96
Query: 188 YTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNPPLTAK 245
YT + + L + + + ++LVVQ G F + + A + A
Sbjct: 97 YTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLII------MNAC 150
Query: 246 HANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-----SS 300
P T FS F+ D A L + P ++ D M +P L S+
Sbjct: 151 LMTDPVTQPAFSAFVTQ---PADGFTAWKYDLVT--PSDLRLDQFMKRWAPTLTEAEASA 205
Query: 301 GSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRDRWLNN 351
++ F T+ G++K K + + + W T + G +D+ L
Sbjct: 206 YAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKLLGP 265
Query: 352 DGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
D + N E +E+ AGH VQE GE++ +
Sbjct: 266 DVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 123 EIFRWFCVESGNAD-NHTVLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKP 180
E R V+ G D HT L +HG PS ++ YRK+LPV + +A D GFG S+KP
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 181 QPGYGFDYTLDEYVASLESFVNEIANDKVSLVVQGY 216
YT + SL +F++ + ++V+LV Q +
Sbjct: 91 TDDA--VYTFGFHRRSLLAFLDALQLERVTLVCQDW 124
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 140 VLLIHGFPSQAYSYRKVLP-VLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL +HG P+ +Y +R ++P V++ Y A+A D +G G S KP +Y L ++VA +
Sbjct: 32 VLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPD----IEYRLQDHVAYXD 87
Query: 199 SFVNEIANDKVSLVVQGYFSPVVVKYA 225
F++ + D LV+ + S + ++A
Sbjct: 88 GFIDALGLDDXVLVIHDWGSVIGXRHA 114
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 117/276 (42%), Gaps = 34/276 (12%)
Query: 130 VESGNADNHTVLL-IHGFPSQAYSYRKVLPVLSKN-YHAIAFDWLGFGFSEKPQPGYGFD 187
++ GN+D V L +HG P+ +Y YRK++PV +++ IA D+ GFG S+KP D
Sbjct: 39 LDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEE--D 96
Query: 188 YTLDEYVASLESFVNEIANDKVSLVVQ--GYFSPVVVKYASXXXXXXXXXXXXNPPLTAK 245
YT + + L + + + ++LVVQ G F + + A + A
Sbjct: 97 YTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLII------MNAC 150
Query: 246 HANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYL-----SS 300
P T FS F+ D A L + P ++ D M +P L S+
Sbjct: 151 LMTDPVTQPAFSAFVTQ---PADGWTAWKYDLVT--PSDLRLDQFMKRWAPTLTEAEASA 205
Query: 301 GSSGFALTAISKGMKKQLKQYVEEMRTIL---------MDKSWKIPTTVCWGQRDRWLNN 351
++ F T+ G++K K + + + W T + G +D+ L
Sbjct: 206 YAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTFMAIGMKDKLLGP 265
Query: 352 DGVEDFCNDSN--HELIELPMAGHHVQEDSGEELGK 385
D + N E +E+ AGH VQE GE++ +
Sbjct: 266 DVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAR 300
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 140 VLLIHGFPSQAY---SYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVAS 196
V+LIHG + A ++R V+P+L+++Y IA D LGFG + KP +YT D +
Sbjct: 39 VILIHGGGAGAESEGNWRNVIPILARHYRVIAMDMLGFGKTAKPD----IEYTQDRRIRH 94
Query: 197 LESFVNEIAND-KVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTAKHANLPSTLSI 255
L F+ + D KVS+V A+ N + A L +
Sbjct: 95 LHDFIKAMNFDGKVSIVGNSMGG------ATGLGVSVLHSELVNALVLMGSAGLVVEIHE 148
Query: 256 FSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVY-RSPYLSSGSSGFALTAISKGM 314
++ F+++ + KALT+ G K DDAM+ R Y + ++ A A + +
Sbjct: 149 DLRPIINYDFTREGMVHLVKALTNDG---FKIDDAMINSRYTYATDEATRKAYVATMQWI 205
Query: 315 KKQLKQYV--EEMRTILMDKSWKIPTTVCWGQRDR 347
++Q + E +R + ++PT V G+ D+
Sbjct: 206 REQGGLFYDPEFIRKV------QVPTLVVQGKDDK 234
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 19/278 (6%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D +L HG P+ +Y +R ++P + IA D +G G S+K P Y
Sbjct: 23 IDEGTGD--PILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYA 80
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNP-PLTAKHA 247
E+ L++ + D+V LVV + S + +A + + A
Sbjct: 81 YAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWA 140
Query: 248 NLPST----LSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSS 303
+ P F + E+ QD + ++ L + E + YR P+L++G +
Sbjct: 141 DFPEQDRDLFQAFRSQAGEELVLQDNVFV-EQVLPGLILRPLSEAEMAAYREPFLAAGEA 199
Query: 304 GFALTAISKGMKKQLKQYVEEMRTILMDKS-W----KIPTTVCWGQRDRWLNNDGVEDFC 358
+S + + ++ I D + W IP + L + DFC
Sbjct: 200 --RRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA-LTTGRMRDFC 256
Query: 359 NDSNHELIELPMAG-HHVQEDSGEELGKVISEIFRKRR 395
++ E+ +AG H +QEDS +E+G I+ R+ R
Sbjct: 257 RTWPNQ-TEITVAGAHFIQEDSPDEIGAAIAAFVRRLR 293
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 19/278 (6%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D +L HG P+ +Y +R ++P + IA D +G G S+K P Y
Sbjct: 24 IDEGTGD--PILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYA 81
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNP-PLTAKHA 247
E+ L++ + D+V LVV + S + +A + + A
Sbjct: 82 YAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWA 141
Query: 248 NLPST----LSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSS 303
+ P F + E+ QD + ++ L + E + YR P+L++G +
Sbjct: 142 DFPEQDRDLFQAFRSQAGEELVLQDNVFV-EQVLPGLILRPLSEAEMAAYREPFLAAGEA 200
Query: 304 GFALTAISKGMKKQLKQYVEEMRTILMDKS-W----KIPTTVCWGQRDRWLNNDGVEDFC 358
+S + + ++ I D + W IP + L + DFC
Sbjct: 201 --RRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA-LTTGRMRDFC 257
Query: 359 NDSNHELIELPMAG-HHVQEDSGEELGKVISEIFRKRR 395
++ E+ +AG H +QEDS +E+G I+ R+ R
Sbjct: 258 RTWPNQ-TEITVAGAHFIQEDSPDEIGAAIAAFVRRLR 294
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 113/278 (40%), Gaps = 19/278 (6%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D +L HG P+ +Y +R ++P + IA D +G G S+K P Y
Sbjct: 24 IDEGTGD--PILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYA 81
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNP-PLTAKHA 247
E+ L++ + D+V LVV + S + +A + + A
Sbjct: 82 YAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWA 141
Query: 248 NLPST----LSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSS 303
+ P F + E+ QD + ++ L + E + YR P+L++G +
Sbjct: 142 DFPEQDRDLFQAFRSQAGEELVLQDNVFV-EQVLPGLILRPLSEAEMAAYREPFLAAGEA 200
Query: 304 GFALTAISKGMKKQLKQYVEEMRTILMDKS-W----KIPTTVCWGQRDRWLNNDGVEDFC 358
+S + + ++ I D + W IP + L + DFC
Sbjct: 201 --RRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA-LTTGRMRDFC 257
Query: 359 NDSNHELIELPMAG-HHVQEDSGEELGKVISEIFRKRR 395
++ E+ +AG H +QEDS +E+G I+ R+ R
Sbjct: 258 RTWPNQ-TEITVAGAHFIQEDSPDEIGAAIAAFVRRLR 294
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 112/283 (39%), Gaps = 29/283 (10%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D ++ HG P+ +Y +R ++P L +A D +G G S+K P Y+
Sbjct: 23 IDEGKGD--AIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYS 80
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTA-KHA 247
E L + + + D V LV+ + S + +A+ +T A
Sbjct: 81 YGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWA 140
Query: 248 NLPSTL-SIFSNFL--LGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSSG 304
+ P + +F F GE + + ++ L Q+ +++ YR P+++ G
Sbjct: 141 DWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDR 200
Query: 305 FALTAISK-----GMKKQLKQYVEEMRTILMDKSWKI------PTTVCWGQRDRWLNNDG 353
+ + G ++ V E R+ L + P + G+
Sbjct: 201 RPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDMPKLFINAEPGAIITGR--------- 251
Query: 354 VEDFCND-SNHELIELPMAGHHVQEDSGEELGKVISEIFRKRR 395
+ D+ N I +P H VQEDS EE+G I++ R+ R
Sbjct: 252 IRDYVRSWPNQTEITVPGV-HFVQEDSPEEIGAAIAQFVRRLR 293
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 112/277 (40%), Gaps = 17/277 (6%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D ++ HG P+ +Y +R ++P L +A D +G G S+K P Y+
Sbjct: 25 IDEGKGD--AIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYS 82
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTA-KHA 247
E L + + + D V LV+ + S + +A+ +T A
Sbjct: 83 YGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWA 142
Query: 248 NLPSTL-SIFSNFL--LGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSSG 304
+ P + +F F GE + + ++ L Q+ +++ YR P+++ G
Sbjct: 143 DWPPAVRGVFQGFRSPQGEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDR 202
Query: 305 FALTAISK-----GMKKQLKQYVEEMRTILMDKSWKIPTTVCWGQRDRWLNNDGVEDFCN 359
+ + G ++ V E R+ L + +P + + + D+
Sbjct: 203 RPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETD--MPKLFINAEPGAIITGR-IRDYVR 259
Query: 360 D-SNHELIELPMAGHHVQEDSGEELGKVISEIFRKRR 395
N I +P H VQEDS EE+G I++ R+ R
Sbjct: 260 SWPNQTEITVPGV-HFVQEDSPEEIGAAIAQFVRRLR 295
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 112/278 (40%), Gaps = 19/278 (6%)
Query: 130 VESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYT 189
++ G D +L HG P+ +Y +R ++P + IA D +G G S+K P Y
Sbjct: 24 IDEGTGD--PILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYA 81
Query: 190 LDEYVASLESFVNEI-ANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNP-PLTAKHA 247
E+ L++ + D+V LVV + S + +A + + A
Sbjct: 82 YAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWA 141
Query: 248 NLPST----LSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSS 303
+ P F + E+ QD + ++ L + E + YR P+L++G +
Sbjct: 142 DFPEQDRDLFQAFRSQAGEELVLQDNVFV-EQVLPGLILRPLSEAEMAAYREPFLAAGEA 200
Query: 304 GFALTAISKGMKKQLKQYVEEMRTILMDKS-W----KIPTTVCWGQRDRWLNNDGVEDFC 358
+S + + ++ I D + W IP + L + DFC
Sbjct: 201 --RRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFINAEPGA-LTTGRMRDFC 257
Query: 359 NDSNHELIELPMAG-HHVQEDSGEELGKVISEIFRKRR 395
++ E+ +AG H +QEDS +E+G I+ + R
Sbjct: 258 RTWPNQ-TEITVAGAHFIQEDSPDEIGAAIAAFVXRLR 294
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 135 ADNHTVLLIHGFPSQAYSY---RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLD 191
+ V+LIHG +Y R +P LSK Y IA D +GFGF+++P+ ++Y+ D
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPE---NYNYSKD 79
Query: 192 EYVASLESFVNEIANDKVSLV 212
+V + ++ + +K +V
Sbjct: 80 SWVDHIIGIMDALEIEKAHIV 100
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 135 ADNHTVLLIHGFPSQAYSY---RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLD 191
+ V+LIHG +Y R +P LSK Y IA D +GFGF+++P+ ++Y+ D
Sbjct: 23 GEGQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPE---NYNYSKD 79
Query: 192 EYVASLESFVNEIANDKVSLV 212
+V + ++ + +K +V
Sbjct: 80 SWVDHIIGIMDALEIEKAHIV 100
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSY-RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
V+LIHGFP +S+ R+ +L Y I +D GFG S +P GY +D
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 75
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
T+LL+HG+P + + KV+ L+++Y I D GFG SEKP Y+LD+
Sbjct: 31 TLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQA 90
Query: 199 SFVNEIANDKVSLVVQGYFSPVVVKY 224
+ ++ + +K +V + + V+ K+
Sbjct: 91 ALLDALGIEKAYVVGHDFAAIVLHKF 116
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSY-RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
V+LIHGFP +S+ R+ +L Y I +D GFG S +P GY +D
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSY-RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
V+LIHGFP +S+ R+ +L Y I +D GFG S +P GY +D
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSY-RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
V+LIHGFP +S+ R+ +L Y I +D GFG S +P GY +D
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYD 74
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 140 VLLIHGFPSQAYSY-RKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
V+LIHG+P +S+ R+ +L++ Y I +D GFG S K GY + D + A L
Sbjct: 26 VVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYDY----DTFAADLH 81
Query: 199 SFVNEIANDKVSLV 212
+ + + V LV
Sbjct: 82 TVLETLDLRDVVLV 95
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGY 184
V+L+HGF Y + +++P L+K + IA D G G SE P+ GY
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGY 77
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGY 184
V+L+HGF Y + +++P L+K + IA D G G SE P+ GY
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGY 77
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGY 184
V+L+HGF Y + +++P L+K + IA D G G SE P+ GY
Sbjct: 33 VMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEPPKTGY 77
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
V+L+HGFP YS+R +P L+ Y +A D G+G S K + Y + E V +
Sbjct: 36 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKA--YRIKELVGDVV 93
Query: 199 SFVNEIANDKVSLVVQGYFSPVVVKYA 225
++ ++ +V + +PV +A
Sbjct: 94 GVLDSYGAEQAFVVGHDWGAPVAWTFA 120
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
V+L+HGFP YS+R +P L+ Y +A D G+G S K + Y + E V +
Sbjct: 30 VVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRSSKYRVQKA--YRIKELVGDVV 87
Query: 199 SFVNEIANDKVSLVVQGYFSPVVVKYA 225
++ ++ +V + +PV +A
Sbjct: 88 GVLDSYGAEQAFVVGHDWGAPVAWTFA 114
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 129 CVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
CV G+ +LL+HGFP + + +V P+L+ Y + D G+G S KP
Sbjct: 19 CVVGGSGP--ALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKP 68
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 129 CVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
CV G+ +LL+HGFP + + +V P+L+ Y + D G+G S KP
Sbjct: 19 CVVGGSGP--ALLLLHGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKP 68
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASL 197
V L HGFP YS+R +P L++ Y +A D G+G E P +Y ++ +
Sbjct: 56 AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG--ESSAPPEIEEYCMEVLCKEM 113
Query: 198 ESFVNEIANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTAKHANLPSTLSIFS 257
+F++++ + + + +V A N P + N+ SI +
Sbjct: 114 VTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKA 173
Query: 258 NFLLG-EIFSQDP 269
N + +++ Q+P
Sbjct: 174 NPVFDYQLYFQEP 186
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASL 197
V L HGFP YS+R +P L++ Y +A D G+G E P +Y ++ +
Sbjct: 41 AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG--ESSAPPEIEEYCMEVLCKEM 98
Query: 198 ESFVNEIANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTAKHANLPSTLSIFS 257
+F++++ + + + +V A N P + N+ SI +
Sbjct: 99 VTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKA 158
Query: 258 NFLLG-EIFSQDP 269
N + +++ Q+P
Sbjct: 159 NPVFDYQLYFQEP 171
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
V L HGFP YS+R +P L++ Y +A D G+G E P +Y ++ +
Sbjct: 261 VCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG--ESSAPPEIEEYCMEVLCKEMV 318
Query: 199 SFVNEIANDKVSLVVQGYFSPVVVKYASXXXXXXXXXXXXNPPLTAKHANLPSTLSIFSN 258
+F++++ + + + +V A N P + N+ SI +N
Sbjct: 319 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKAN 378
Query: 259 FLLG-EIFSQDP 269
+ +++ Q+P
Sbjct: 379 PVFDYQLYFQEP 390
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 27/274 (9%)
Query: 132 SGNADNHTVLLIHGFPSQAYS---YRKVLPVLSKNYHAIAFDWLGFGFSEKPQ--PGYGF 186
+G+ + V+L+HG A++ +R ++P L++N+ +A D +GFG SE P+ PG+
Sbjct: 24 AGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIM 83
Query: 187 DYTLDEYVASLESFVNEIANDKVSLV---VQGYFSPVVVKYASXXXXXXXXXXXXNPPLT 243
+ + V + +N +K +V + G + +V A P+
Sbjct: 84 SW-VGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMN 142
Query: 244 AKHANLPSTLSIFSNFLLGEIFSQDPLRASDKALTSCGPYQMKEDDAM--VYRSPYLSSG 301
A+ L L+ ++ DP + L Y + M + +S + +
Sbjct: 143 ARPPELARLLAFYA----------DPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVAN 192
Query: 302 SSGFALTAISKGMKKQLKQYVEEMRTILMDKSWKIP--TTVCWGQRDRWLNNDGVEDFCN 359
+ I + M + +K +E + I ++P V G++DR + D
Sbjct: 193 DP--EVRRIQEVMFESMKAGMESL-VIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTK 249
Query: 360 DSNH-ELIELPMAGHHVQEDSGEELGKVISEIFR 392
H EL+ L GH Q + + +G ++ E FR
Sbjct: 250 HLKHAELVVLDRCGHWAQLERWDAMGPMLMEHFR 283
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
+LL+HG+P + K+ P+L+ N+ +A D G+G S +P
Sbjct: 28 LLLLHGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRP 68
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 127 WFCVESGN------ADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
W SG D +LL+HGFP + +V P L++ + I D G+G+S+ P
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 181 Q 181
+
Sbjct: 77 E 77
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 127 WFCVESGN------ADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
W SG D +LL+HGFP + +V P L++ + I D G+G+S+ P
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 181 Q 181
+
Sbjct: 77 E 77
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 127 WFCVESGN------ADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
W SG D +LL+HGFP + +V P L++ + I D G+G+S+ P
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 181 Q 181
+
Sbjct: 77 E 77
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 127 WFCVESGN------ADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKP 180
W SG D +LL+HGFP + +V P L++ + I D G+G+S+ P
Sbjct: 17 WINTSSGRIFARVGGDGPPLLLLHGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMP 76
Query: 181 Q 181
+
Sbjct: 77 E 77
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSEKPQPGYGFD 187
V+LIHG+P S+ +P L + Y I +D GFG S +P GY +D
Sbjct: 30 VVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYD 78
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 131 ESGNADNHTVLLIHGFPSQAYS---YRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
E+G ++ TV+L+HG A S + + + VL++++H +A D G+G S+K F
Sbjct: 30 EAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQF- 88
Query: 188 YTLDEYVA-SLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
+ Y A +L+ +++ +V LV V++A
Sbjct: 89 ---NRYAAMALKGLFDQLGLGRVPLVGNALGGGTAVRFA 124
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
TVLL HGF +R LP L K + I FD++G G S+ +L+ Y +E
Sbjct: 30 TVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVE 89
Query: 199 SFVNEIANDKVSLVVQGY-FSPVVVKYAS 226
+ +A D V++ + G+ S ++ AS
Sbjct: 90 EIL--VALDLVNVSIIGHSVSSIIAGIAS 116
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 131 ESGNADNHTVLLIHGFPSQAYS---YRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
E+G ++ TV+L+HG A S + + + VL++++H +A D G+G S+K F
Sbjct: 50 EAGVGNDQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQF- 108
Query: 188 YTLDEYVA-SLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
+ Y A +L+ +++ +V LV V++A
Sbjct: 109 ---NRYAAMALKGLFDQLGLGRVPLVGNSLGGGTAVRFA 144
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 109 PIFGLDLGSASQADEIFRWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLS-KNYHAI 167
P+ LD S Q + V A+ T+LL HG A ++ + + VL+ Y I
Sbjct: 19 PVHYLDFTSQGQPLSX-AYLDVAPKKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVI 77
Query: 168 AFDWLGFGFSEKPQPGYGFDYTLDEYVASLESFVNEIANDKVSLVVQGYFSPVVVKYA 225
A D +GF S KP + Y+ + A+ + + + + S++ + +YA
Sbjct: 78 AVDQVGFCKSSKPA---HYQYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYA 132
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL HG+P A + + LS + Y IAFD GFG S++P G +D D+ +E
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL HG+P A + + LS + Y IAFD GFG S++P G +D D+ +E
Sbjct: 22 VLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 141 LLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLESF 200
L HG S + + + LS + IA D G G S+KP+ G Y ++Y +
Sbjct: 72 LFFHGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETG----YEANDYADDIAGL 127
Query: 201 VNEIANDKVSLV 212
+ +A LV
Sbjct: 128 IRTLARGHAILV 139
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFG 175
T+L IHGFP YS+R + L+ + Y A+A D G+G
Sbjct: 33 TILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFG 175
T+L IHGFP YS+R + L+ + Y A+A D G+G
Sbjct: 33 TILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYG 70
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 131 ESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQ-PGYGFDY 188
E+ N ++ +HGF S + +Y + + NYH I D G G + + FDY
Sbjct: 10 EANVETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDY 68
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 137 NHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDY----TLDE 192
+ + L HGF + ++ +LP ++NY + +D + G P Y FD+ TLD
Sbjct: 19 DRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAG---SVNPDY-FDFNRYTTLDP 74
Query: 193 YVASLESFVNEI 204
YV L + V+ +
Sbjct: 75 YVDDLLNIVDSL 86
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 125 FRWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSK-NYHAIAFDWLGFGFSEKPQ-- 181
R VE G+ + L HGFP +S+R +P L++ + +A D G+G S P
Sbjct: 246 IRLHFVEMGSGP--ALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEI 303
Query: 182 PGYGFDYTLDEYVASLESF 200
Y + E V L+
Sbjct: 304 EEYAMELLCKEMVTFLDKL 322
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSE 178
+LL+HG+P ++ ++ P L+++Y + D G+G S
Sbjct: 34 LLLLHGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESR 72
>pdb|3IBT|A Chain A, Structure Of 1h-3-Hydroxy-4-Oxoquinoline 2,4-Dioxygenase
(Qdo)
Length = 264
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 131 ESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLG 173
ESG+ T+ L+ G+ ++ + P+L++++H I DW G
Sbjct: 15 ESGDPHAPTLFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRG 57
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL HG+ A + + LS + Y IAFD GFG S++P G +D D+ +E
Sbjct: 22 VLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL HG+ A + + LS + Y IAFD GFG S++P G +D D+ +E
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 140 VLLIHGFPSQAYSYRKVLPVLS-KNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEYVASLE 198
VL HG+ A + + LS + Y IAFD GFG S++P G +D D+ +E
Sbjct: 22 VLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIE 81
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 117 SASQADEIFRWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGF 176
S ++ +I V SG V+L HGF + ++ +VLP L++++ + +D + G
Sbjct: 2 SGAKLLQILNVRVVGSGE---RVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAG- 57
Query: 177 SEKPQPGYGFDY----TLDEYVASLESFVNEIANDKVSLV 212
S P FD+ LD YV L + ++ + + + V
Sbjct: 58 SVNPD---HFDFRRYDNLDAYVDDLLAILDALRIPRCAFV 94
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 123 EIFRWFCVESGNADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQP 182
++ + V + V+L HGF + ++ +VLP L++++ + +D + G S P
Sbjct: 3 KLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAG-SVNPD- 60
Query: 183 GYGFDY----TLDEYVASLESFVNEIANDKVSLV 212
FD+ LD YV L + ++ + + + V
Sbjct: 61 --HFDFRRYDNLDAYVDDLLAILDALRIPRCAFV 92
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDY----TLDEYV 194
++L HGF + ++ ++LP ++Y + +D + G P + FD+ TLD YV
Sbjct: 22 VLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAG---SVNPDF-FDFRRYTTLDPYV 77
Query: 195 ASLESFVNEIANDKVSLV 212
L ++ + D + V
Sbjct: 78 DDLLHILDALGIDCCAYV 95
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 139 TVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDY----TLDEYV 194
++L HGF + ++ ++LP ++Y + +D + G P + FD+ TLD YV
Sbjct: 22 VLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAG---SVNPDF-FDFRRYTTLDPYV 77
Query: 195 ASLESFVNEIANDKVSLV 212
L ++ + D + V
Sbjct: 78 DDLLHILDALGIDCCAYV 95
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 140 VLLIHGFPSQAYSYRKVL-PVLSKNYHAIAFDWLGFGFSEKPQPGYGFD 187
V+ IHG+P +++ L V+ Y IA D G G S GY FD
Sbjct: 22 VVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGHSTPVWDGYDFD 70
>pdb|2KKI|A Chain A, Solution Structure Of Human Interleukin 1a
pdb|2L5X|A Chain A, Solution Structure Of Il1a-S100a13 Complex
pdb|2L5X|D Chain D, Solution Structure Of Il1a-S100a13 Complex
Length = 151
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 259 FLLGEIFSQDPLRASDKALTSCGPYQMKEDDAMVYRSPYLSSGSSGFALTAISKGMKKQL 318
F+L + +Q +RA+D+ LT+ + + D+A+ + S +T I + K QL
Sbjct: 14 FILNDALNQSIIRANDQYLTAAALHNL--DEAVKFDMGAYKSSKDDAKITVILRISKTQL 71
Query: 319 KQYV---EEMRTILMDKSWKIPTTVC 341
YV +E + +L+ + +IP T+
Sbjct: 72 --YVTAQDEDQPVLLKEMPEIPKTIT 95
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 134 NADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEY 193
+ D +LL+ G+ Y+ ++ L ++ I +W G G S P +G+ + +
Sbjct: 24 DTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDA 83
Query: 194 VASLESF 200
+ L+
Sbjct: 84 LEILDQL 90
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 134 NADNHTVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSEKPQPGYGFDYTLDEY 193
+ D +LL+ G+ Y+ ++ L ++ I +W G G S P +G+ + +
Sbjct: 27 DTDGPAILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVKDA 86
Query: 194 VASLESF 200
+ L+
Sbjct: 87 LEILDQL 93
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 349 LNNDGVEDFCNDSNHELIELPMAGHHVQEDSG-EELGKVISEI 390
+ ++GVE F N+ N E+I + +G H QEDS EE+ +V + I
Sbjct: 171 IASEGVEKFKNE-NFEIIIVDTSGRHKQEDSLFEEMLQVANAI 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,734,109
Number of Sequences: 62578
Number of extensions: 510278
Number of successful extensions: 1234
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 101
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)