BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015904
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis
GN=zcchc8 PE=2 SV=1
Length = 743
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +++CPKPRD+ +N RK+ + + ++N RY
Sbjct: 201 GQEIQVKAKRPKPCCFNCGSEEHQMRDCPKPRDQAHINMKRKEFLDACGE-AGNQNQQRY 259
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGL 395
+ ++ +PG + E ++ LG+
Sbjct: 260 HAEEVEERFGKYKPGVISEELQEALGI 286
>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus
GN=ZCCHC8 PE=2 SV=1
Length = 613
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 321 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 380
S CFNCGS H +K+CPKPR+ ++ RK+ + S RY+ ++
Sbjct: 126 SHCFNCGSEEHQIKDCPKPRNAARISEKRKEFMEAYGEASNQNFQQRYHAEEVEERFGKF 185
Query: 381 RPGALDAETRQLLGL 395
+PG + E + LG+
Sbjct: 186 KPGVISGELQDALGV 200
>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain-containing protein 8 OS=Mus musculus
GN=Zcchc8 PE=2 SV=3
Length = 709
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 323 CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLRP 382
CFNCGS H +KECP PR+ ++ RK++ + S RY+ ++ +P
Sbjct: 232 CFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQQRYHAEEVEERFGRFKP 291
Query: 383 GALDAETRQLLGL 395
G + E + LG+
Sbjct: 292 GVISEELQDALGV 304
>sp|Q2PE14|ZCHC8_DROME Zinc finger CCHC domain-containing protein 8 homolog OS=Drosophila
melanogaster GN=CG4622 PE=1 SV=2
Length = 553
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 321 SRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKYDGL 380
S CFNCG HSL++C KPR+ + ARK+ S+ RY+ ++ ++ +
Sbjct: 183 SSCFNCGDTEHSLRDCTKPRNNSRITRARKKMTSRTE---------RYHVDTE-QRFGHI 232
Query: 381 RPGALDAETRQLLG 394
RPG + +TR +G
Sbjct: 233 RPGKISTKTRHAMG 246
>sp|Q5R789|ZCHC8_PONAB Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii
GN=ZCCHC8 PE=2 SV=1
Length = 704
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 213 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 272
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGL 395
+ ++ +PG + E + LG+
Sbjct: 273 HAEEVEERFGRFKPGVISEELQDALGV 299
>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens
GN=ZCCHC8 PE=1 SV=2
Length = 707
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 313 GLEIIDDASR----CFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRY 368
G EI A R CFNCGS H +K+CP PR+ ++ RK++ + + RY
Sbjct: 215 GQEIQVKAKRPKPHCFNCGSEEHQMKDCPMPRNAARISEKRKEYMDACGEANNQNFQQRY 274
Query: 369 YQNSAGGKYDGLRPGALDAETRQLLGL 395
+ ++ +PG + E + LG+
Sbjct: 275 HAEEVEERFGRFKPGVISEELQDALGV 301
>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag PE=3 SV=1
Length = 519
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 311 EGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+GG + RC+NCG + H ++CP+PR + + H +K
Sbjct: 387 QGGPKRQRPPLRCYNCGKFGHMQRQCPEPRKTKCLKCGKLGHLAK 431
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSAG 374
+CFNCG H+ K C PR K R+ H+ K Q + R + + Q AG
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLREDLAFPQGKAG 444
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|Q8AII2|GAG_SIVTN Gag polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag PE=3 SV=3
Length = 524
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 33/153 (21%)
Query: 252 FFPAIRVGKAKGPAVSFWIDN----QTRNQQNKNFIPSDSHGTPLYDRGYALGLTSGDG- 306
F+ IR +A P V W+ Q N K+ + + G L + A G
Sbjct: 326 FYKTIRAEQASQP-VKTWMTETLLVQNANPDCKHILKALGQGATLEEMLTACQGVGGPSH 384
Query: 307 ---------SSNLEGGLEIIDDASR---------CFNCGSYSHSLKECPKPRDKDAVNNA 348
+S GG+ ++ R CFNCG H+ + C PR K
Sbjct: 385 KAKILAEAMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCWRCG 444
Query: 349 RKQHKSKRNQNSASRNPMRYYQNSAGGKYDGLR 381
++ H+ K + +RN NS G + G R
Sbjct: 445 QEGHQMK---DCTTRN------NSTGVNFLGKR 468
>sp|P27978|GAG_SIVVG Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag PE=3 SV=1
Length = 521
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 403 KCYNCGKFGHMQRQCPEPRKMRCLKCGKPGHLAK 436
>sp|O89291|GAG_HV193 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag PE=3 SV=3
Length = 492
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H K C PR K R+ H+ K
Sbjct: 376 SNFKGQRRIV----KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 419
>sp|P27972|GAG_SIVV1 Gag polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag PE=3 SV=1
Length = 520
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+C+NCG + H ++CP+PR + + H +K
Sbjct: 399 KCYNCGKFGHMQRQCPEPRKIKCLKCGKPGHLAK 432
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 309 NLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNP 365
N +G +II +CFNCG H K C PR K ++ H+ K Q + R
Sbjct: 383 NFKGPRKII----KCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLKDCTERQANFLREN 438
Query: 366 MRYYQNSAG 374
+ + Q AG
Sbjct: 439 LAFPQGKAG 447
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 35.4 bits (80), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 287 SHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVN 346
SH + + S D +G I+ +CFNCG H + C PR K
Sbjct: 355 SHKARVLAEAMSQAQHSNDAKRQFKGPKRIV----KCFNCGKEGHIARNCKAPRRKGCWK 410
Query: 347 NARKQHKSKRNQNSASRNPMR 367
++ H+ + N N R
Sbjct: 411 CGQEGHQMRNCTNERQANFFR 431
>sp|P18800|GAG_HV1ND Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag PE=3 SV=3
Length = 497
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H+ K C PR K R+ H+ K
Sbjct: 389 KCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMK 422
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSAS 362
+CFNCG + H +EC PR + H +K +N +
Sbjct: 391 KCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA 431
>sp|Q02843|GAG_SIVG1 Gag polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag PE=1 SV=1
Length = 513
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSAS 362
+CFNCG + H +EC PR + H +K +N +
Sbjct: 391 KCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNGQA 431
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAG 374
+CFNCG H K C PR + ++ H+ K +N N R S G
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFFREVLASGG 447
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 298 ALGLTSGDGSSNLEGGLE--IIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
A+ + G + L+GG + +CFNCG H+ + C PR K ++ H+ K
Sbjct: 392 AMASATAGGVNMLQGGKRPPLKKGQLQCFNCGKVGHTARNCRAPRKKGCWRCGQEGHQMK 451
Query: 356 RNQNSASRNPMRYYQNSAGGKYDGLRPGALDAETRQL 392
+ +RN NS G + + +TR+L
Sbjct: 452 ---DCTTRN------NSTGVNFFRETHPLVGVQTREL 479
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G ++ +CFNCG H + C PR K R+ H+ K
Sbjct: 375 SNFKGQRRVV----KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 418
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 373
+CFNCG H K C PR K R+ H+ K Q + R + + Q A
Sbjct: 393 KCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMKDCTERQANFLREDLAFLQGKA 447
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 378
+CFNCG H + C PR K ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIARNCRAPRKKGCWKCGQEGHQMKDCRNGKQANFL--------GKYWPPG 446
Query: 379 GLRPG 383
G RPG
Sbjct: 447 GTRPG 451
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 307 SSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G II +CFNCG H + C PR K ++ H+ K
Sbjct: 381 KSNFKGPRRII----KCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMK 425
>sp|Q9QSR4|GAG_HV1VI Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag PE=3 SV=3
Length = 491
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G ++ +CFNCG H + C PR K R+ H+ K
Sbjct: 375 SNFKGQRRVV----KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 418
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K R+ H+ K
Sbjct: 390 KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 423
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G II +CFNCG H + C PR K ++ H+ K
Sbjct: 382 SNFKGPRRII----KCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMK 425
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSKRNQNSASRNPMRYYQNSAGGKY---D 378
+CFNCG H K C PR + ++ H+ K +N N + GKY
Sbjct: 395 KCFNCGKEGHIAKNCRAPRKRGCWKCGQEGHQMKDCKNGRQANFL--------GKYWPPG 446
Query: 379 GLRPG 383
G RPG
Sbjct: 447 GTRPG 451
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 309 NLEGGLEIIDDASR---CFNCGSYSHSLKECPKPRDKDAVNNAR 349
N EG + A R C+NCG+ H +CPKP + VN R
Sbjct: 392 NKEGHVARFFKAPRRKGCWNCGAMDHQKAQCPKPAQQQRVNFFR 435
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSAG 374
+CFNCG H K C PR K ++ H+ K Q + R + + Q AG
Sbjct: 393 KCFNCGKEGHIAKNCRAPRRKGCWKCGKEGHQLKDCTERQANFLREDLAFPQGKAG 448
>sp|A3PBY5|GLMU_PROM0 Bifunctional protein GlmU OS=Prochlorococcus marinus (strain MIT
9301) GN=glmU PE=3 SV=1
Length = 449
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 12 LVVVPLWCFWWRYFLWFSGPLRVVHLMQGIWAVDQGSSYIGYLPFCLYMEAEDVIDLLAS 71
L+ ++CF W LR + + I+ D I L L +E ED
Sbjct: 167 LINAGVYCFNWGKLSEIINTLRSNNNQKEIYLTDT----ISMLKNSLSLEVED------- 215
Query: 72 SPSGCEEENNEMPGRDGEPGKSDFQPN--DSEKKEDDSNGESMELNELNVEIEDGQLIEE 129
N E+ G + S+ + N +S K++ NG + +N+ + I EE
Sbjct: 216 --------NGELQGINNRIQLSECEENMQNSIKEKHMLNGVTF-INKASCSIS-----EE 261
Query: 130 GEVGKDVVDDSNVNVEGTTTVE 151
E+GKDV+ ++N ++ G T ++
Sbjct: 262 AEIGKDVIIEANTHLRGNTKIK 283
>sp|P05960|POL_HV1C4 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate CDC-451) GN=gag-pol PE=3
SV=3
Length = 550
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H + C PR K R+ H+ K
Sbjct: 391 KCFNCGKEGHIARNCKAPRKKGCWKCGREGHQMK 424
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 307 SSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H + C PR K ++ H+ K
Sbjct: 375 KSNFKGQKRIV----KCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMK 419
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
EK505) GN=gag-pol PE=3 SV=3
Length = 1448
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 295 RGYALGLTSGDGSSNL---EGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQ 351
R A +T ++++ G + I +CFNCG H + C PR K ++
Sbjct: 364 RVLAEAMTQAQTATSVFMQRGNFKGIRKTIKCFNCGKEGHLARNCKAPRKKGCWKCGQEG 423
Query: 352 HKSK 355
H+ K
Sbjct: 424 HQMK 427
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K R+ H+ K
Sbjct: 390 KCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMK 423
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K R+ H+ K
Sbjct: 393 KCFNCGKEGHIAKNCRAPRKKGCWRCGREGHQMK 426
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K ++ H+ K
Sbjct: 391 KCFNCGKVGHIAKNCRAPRKKGCWKCGKEGHQMK 424
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 373
+CFNCG H+ + C PR K ++ H+ K Q + R + + Q A
Sbjct: 391 KCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKA 445
>sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag PE=3 SV=3
Length = 500
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 309 NLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
N +G +II +CFNCG H K C PR K ++ H+ K
Sbjct: 383 NFKGPRKII----KCFNCGKEGHIAKNCRAPRKKGCWRCGKEGHQLK 425
>sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag PE=3 SV=3
Length = 499
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 287 SHGTPLYDRGYALGLTSGDGSSNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVN 346
SH + + S D +G I+ +CFNCG H + C PR K
Sbjct: 355 SHKARVLAEAMSQAQHSNDAKRQFKGPKRIV----KCFNCGKEGHIARNCKAPRRKGCWK 410
Query: 347 NARKQHKSKRNQNSASRN 364
++ H+ + N N
Sbjct: 411 CGQEGHQMRNCTNERQAN 428
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 373
+CFNCG H+ + C PR K ++ H+ K Q + R + + Q A
Sbjct: 391 KCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLREDLAFLQGKA 445
>sp|Q9QBZ6|GAG_HV1MP Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag PE=3 SV=2
Length = 492
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 308 SNLEGGLEIIDDASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
SN +G I+ +CFNCG H + C PR K ++ H+ K
Sbjct: 376 SNFKGQKRIV----KCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMK 419
>sp|P22381|GAG_SIVGB Gag polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag PE=3 SV=1
Length = 502
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 309 NLEGGLEIIDDASR---CFNCGSYSHSLKECPKPRDKDAVN 346
N EG + A R C+NCG+ H +CPKP + VN
Sbjct: 392 NKEGHVARFFKAPRRKGCWNCGAMDHQKAQCPKPAQQQRVN 432
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H + C PR K R+ H+ K
Sbjct: 392 KCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMK 425
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H K C PR K ++ H+ K
Sbjct: 390 KCFNCGKQGHIAKNCRAPRKKGCWKCGKEGHQMK 423
>sp|P05887|GAG_HV1C4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate CDC-451) GN=gag PE=3 SV=3
Length = 500
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 322 RCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK 355
+CFNCG H + C PR K R+ H+ K
Sbjct: 391 KCFNCGKEGHIARNCKAPRKKGCWKCGREGHQMK 424
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 320 ASRCFNCGSYSHSLKECPKPRDKDAVNNARKQHKSK---RNQNSASRNPMRYYQNSA 373
A +CFNCG H + C PR K ++ H+ K Q + R + + Q A
Sbjct: 386 AIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTERQANFFRETLAFQQGKA 442
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,243,323
Number of Sequences: 539616
Number of extensions: 7495216
Number of successful extensions: 20377
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 19679
Number of HSP's gapped (non-prelim): 731
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)