BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015905
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 323

 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 132 FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV 191
            T    DF   FK P  +  G + QF + P   ++   +      LP  I  G++LV C 
Sbjct: 53  LTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLLSKL----LNLPAEIAVGVILVGCC 108

Query: 192 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIL 251
            G   SN  T+L    +A LS+ +TS+ST  +  +TP + L+L G+ L +   GM+ SI+
Sbjct: 109 PGGTASNVMTYLARGNVA-LSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIV 167

Query: 252 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFG 307
           ++V++PI  GL++++        +   LP +S    VL+    VGA     +ES +  F 
Sbjct: 168 KMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFA 227

Query: 308 XXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS 355
                    + L  F A +  TGL +         Q+TL+ E GMQ+S
Sbjct: 228 VVVLHNGIGYLLGFFAAKW--TGLPYDA-------QKTLTIEVGMQNS 266


>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 332

 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 18/228 (7%)

Query: 132 FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV 191
            T    DF   FK P  +  G + QF + P   +    +      LP  I  G++LV C 
Sbjct: 58  LTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKL----LNLPAEIAVGVILVGCC 113

Query: 192 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIL 251
            G   SN  T+L    +A LS+ +TS+ST T+  +TP + L+L G+ L +   GM+ SI+
Sbjct: 114 PGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIV 172

Query: 252 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFG 307
           ++V++PI  GL++++        +   LP +S    VL+    VGA     +ES +  F 
Sbjct: 173 KMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFA 232

Query: 308 XXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS 355
                    + L  F A +  TGL +         Q+ L+ E GMQ+S
Sbjct: 233 VVVLHNGIGYLLGFFAAKW--TGLPYDA-------QKALTIEVGMQNS 271


>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
 pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
           From Clostridium Acetobutylicum At 2.37 A Resolution
          Length = 354

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLS--NYATFLTDPPLAPLSIVMTSLSTATAV 224
           F  I  + F +P  + A   L+    G  +    Y  FL   P      +    ST+   
Sbjct: 75  FDEIGTNAFKIPAEVDA---LIGIGGGKAIDAVKYXAFLRKLPF-----ISVPTSTSNDG 126

Query: 225 FVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 257
           F +P+ SLL+ GKR  V  K     ++ I V+ 
Sbjct: 127 FSSPVASLLINGKRTSVPAKTPDGIVVDIDVIK 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,829,462
Number of Sequences: 62578
Number of extensions: 355014
Number of successful extensions: 809
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 4
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)