Query 015905
Match_columns 398
No_of_seqs 197 out of 1635
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 2.3E-52 5E-57 407.6 33.8 287 101-397 4-308 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 5.2E-43 1.1E-47 348.3 29.9 241 133-381 59-315 (328)
3 TIGR00841 bass bile acid trans 100.0 2E-41 4.4E-46 331.1 31.3 262 116-397 14-279 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 7.9E-36 1.7E-40 295.1 30.8 280 109-395 1-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 3E-31 6.4E-36 258.9 32.4 290 97-394 2-330 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 1.4E-29 3E-34 233.0 18.4 179 115-304 3-186 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 3.2E-28 7E-33 242.7 13.2 238 133-380 129-367 (371)
8 KOG4821 Predicted Na+-dependen 98.9 2.6E-08 5.5E-13 92.4 12.4 173 100-273 13-222 (287)
9 KOG2718 Na+-bile acid cotransp 98.4 9.5E-08 2.1E-12 96.3 2.6 239 131-387 58-308 (371)
10 TIGR00946 2a69 he Auxin Efflux 98.3 1.4E-05 3E-10 79.5 14.3 86 144-234 235-320 (321)
11 PRK09903 putative transporter 98.0 0.00011 2.3E-09 73.1 13.4 83 147-234 228-310 (314)
12 PRK12460 2-keto-3-deoxyglucona 97.8 0.00084 1.8E-08 66.5 15.9 254 112-397 16-307 (312)
13 PF03812 KdgT: 2-keto-3-deoxyg 97.7 0.0037 7.9E-08 61.9 18.7 267 102-398 2-314 (314)
14 COG0679 Predicted permeases [G 97.7 0.00071 1.5E-08 67.3 14.0 87 144-235 222-308 (311)
15 PF03547 Mem_trans: Membrane t 97.6 0.00089 1.9E-08 67.7 13.6 80 147-231 306-385 (385)
16 PF05145 AmoA: Putative ammoni 97.3 0.24 5.1E-06 49.7 26.2 241 134-397 42-317 (318)
17 TIGR00793 kdgT 2-keto-3-deoxyg 97.0 0.0077 1.7E-07 59.4 11.9 255 115-398 19-314 (314)
18 COG3180 AbrB Putative ammonia 96.9 0.52 1.1E-05 47.7 23.4 95 133-236 74-169 (352)
19 PRK05274 2-keto-3-deoxyglucona 96.3 0.25 5.4E-06 49.7 17.0 235 134-396 64-314 (326)
20 TIGR00946 2a69 he Auxin Efflux 95.3 0.26 5.5E-06 49.0 12.4 118 244-368 4-126 (321)
21 PF04172 LrgB: LrgB-like famil 95.0 0.94 2E-05 43.0 14.6 92 136-234 67-158 (215)
22 PF03977 OAD_beta: Na+-transpo 94.9 3.6 7.8E-05 41.5 18.9 92 137-236 83-175 (360)
23 TIGR03136 malonate_biotin Na+- 94.2 5.1 0.00011 40.9 18.1 92 137-236 119-212 (399)
24 TIGR00659 conserved hypothetic 94.0 2 4.2E-05 41.1 14.3 92 136-234 77-168 (226)
25 PRK04288 antiholin-like protei 93.9 2.3 4.9E-05 40.8 14.6 92 136-234 83-174 (232)
26 PRK10711 hypothetical protein; 93.9 1.8 4E-05 41.5 13.9 92 136-234 78-169 (231)
27 PRK09903 putative transporter 93.7 1.5 3.1E-05 43.6 13.5 111 251-369 9-124 (314)
28 PF03547 Mem_trans: Membrane t 93.6 1.2 2.6E-05 45.0 12.9 107 253-368 8-120 (385)
29 COG0679 Predicted permeases [G 93.4 1.5 3.3E-05 43.6 13.1 70 310-383 66-136 (311)
30 TIGR03082 Gneg_AbrB_dup membra 93.4 2 4.3E-05 38.5 12.5 90 134-232 64-154 (156)
31 PF03601 Cons_hypoth698: Conse 92.2 1.4 3E-05 44.0 10.8 108 253-367 28-139 (305)
32 TIGR01109 Na_pump_decarbB sodi 89.3 19 0.0004 36.4 15.4 92 137-236 77-175 (354)
33 COG1346 LrgB Putative effector 89.2 4.9 0.00011 38.4 10.9 89 136-234 80-171 (230)
34 PRK15475 oxaloacetate decarbox 88.5 26 0.00057 36.0 16.0 98 137-236 148-246 (433)
35 PF05145 AmoA: Putative ammoni 88.5 8.5 0.00018 38.5 12.8 93 134-235 221-314 (318)
36 PRK15477 oxaloacetate decarbox 88.4 27 0.00058 35.9 16.0 98 137-236 148-246 (433)
37 PRK15476 oxaloacetate decarbox 88.4 27 0.00058 35.9 16.0 98 137-236 148-246 (433)
38 PF06826 Asp-Al_Ex: Predicted 85.1 16 0.00034 33.4 11.5 55 306-365 82-136 (169)
39 COG2855 Predicted membrane pro 84.0 52 0.0011 33.4 17.8 92 134-234 83-178 (334)
40 PRK05326 potassium/proton anti 82.4 76 0.0016 34.2 20.2 58 217-275 159-216 (562)
41 PRK04972 putative transporter; 81.9 7.9 0.00017 41.9 9.5 83 306-393 471-557 (558)
42 TIGR00932 2a37 transporter, mo 79.4 60 0.0013 31.1 22.4 132 133-275 61-198 (273)
43 PRK02830 Na(+)-translocating N 78.7 59 0.0013 30.6 14.7 80 210-289 40-127 (202)
44 PRK01061 Na(+)-translocating N 76.3 78 0.0017 30.7 15.0 96 187-288 29-135 (244)
45 TIGR00210 gltS sodium--glutama 75.1 44 0.00095 34.7 12.2 78 313-394 309-394 (398)
46 TIGR00698 conserved hypothetic 74.8 30 0.00065 35.1 10.6 104 255-365 35-143 (335)
47 PRK12456 Na(+)-translocating N 73.6 81 0.0018 29.6 14.6 80 210-289 41-124 (199)
48 COG1346 LrgB Putative effector 73.2 90 0.002 30.0 15.1 96 292-394 76-172 (230)
49 PRK10711 hypothetical protein; 73.1 70 0.0015 30.8 12.1 93 293-394 75-170 (231)
50 TIGR00659 conserved hypothetic 71.4 85 0.0018 30.1 12.3 92 294-394 75-169 (226)
51 COG1883 OadB Na+-transporting 71.3 32 0.0007 34.3 9.5 92 137-236 98-190 (375)
52 TIGR01940 nqrE NADH:ubiquinone 70.4 96 0.0021 29.2 14.6 80 210-289 39-126 (200)
53 TIGR01943 rnfA electron transp 69.7 97 0.0021 28.9 14.3 96 187-289 21-116 (190)
54 PF03601 Cons_hypoth698: Conse 68.2 1.3E+02 0.0029 29.9 20.1 94 133-234 72-169 (305)
55 TIGR03802 Asp_Ala_antiprt aspa 67.5 54 0.0012 35.5 11.3 54 306-364 476-529 (562)
56 PRK15086 ethanolamine utilizat 65.7 1.7E+02 0.0036 30.1 21.9 155 107-270 3-193 (372)
57 COG3180 AbrB Putative ammonia 65.1 1.1E+02 0.0024 31.2 12.2 92 134-234 254-346 (352)
58 PRK05151 electron transport co 63.1 1.3E+02 0.0029 28.1 14.8 96 186-289 21-117 (193)
59 COG0475 KefB Kef-type K+ trans 61.5 2E+02 0.0044 29.6 21.9 124 133-261 76-203 (397)
60 PF04172 LrgB: LrgB-like famil 60.9 1.3E+02 0.0028 28.5 11.3 92 294-394 65-159 (215)
61 TIGR00844 c_cpa1 na(+)/h(+) an 60.2 3.1E+02 0.0066 31.3 19.4 16 133-148 89-104 (810)
62 PRK09796 PTS system cellobiose 58.2 1.5E+02 0.0033 31.5 12.3 34 157-194 158-192 (472)
63 PRK04288 antiholin-like protei 57.4 1.9E+02 0.004 27.9 14.8 93 293-394 80-175 (232)
64 PF03956 DUF340: Membrane prot 56.9 97 0.0021 28.8 9.5 133 255-395 2-136 (191)
65 PRK09824 PTS system beta-gluco 56.5 1.5E+02 0.0032 32.7 12.3 33 157-193 154-187 (627)
66 COG2855 Predicted membrane pro 55.1 1.2E+02 0.0027 30.7 10.4 80 255-337 41-121 (334)
67 PRK03562 glutathione-regulated 55.0 2.1E+02 0.0045 31.4 13.2 84 143-234 291-379 (621)
68 PLN03159 cation/H(+) antiporte 54.1 3.8E+02 0.0083 30.6 28.5 30 204-233 195-224 (832)
69 PF02508 Rnf-Nqr: Rnf-Nqr subu 51.3 2.1E+02 0.0045 26.6 13.6 75 211-289 41-115 (190)
70 PF03812 KdgT: 2-keto-3-deoxyg 49.2 68 0.0015 32.2 7.5 110 253-367 14-135 (314)
71 PF03390 2HCT: 2-hydroxycarbox 47.9 3.5E+02 0.0076 28.3 25.6 142 111-268 95-269 (414)
72 PF04346 EutH: Ethanolamine ut 46.8 3.4E+02 0.0074 27.8 19.1 158 107-270 3-192 (354)
73 TIGR03802 Asp_Ala_antiprt aspa 45.3 4.3E+02 0.0094 28.6 14.0 46 136-186 466-514 (562)
74 PF05982 DUF897: Domain of unk 45.0 3.5E+02 0.0076 27.4 17.7 170 156-337 63-264 (327)
75 TIGR01625 YidE_YbjL_dupl AspT/ 43.7 1.2E+02 0.0027 27.1 7.8 47 316-367 93-139 (154)
76 PRK03562 glutathione-regulated 43.5 4.8E+02 0.01 28.6 19.7 86 133-226 74-163 (621)
77 COG3641 PfoR Predicted membran 42.7 2.9E+02 0.0063 28.0 10.7 49 149-205 50-98 (348)
78 PRK15060 L-dehydroascorbate tr 41.8 4.4E+02 0.0095 27.7 15.4 16 133-148 258-273 (425)
79 PF11120 DUF2636: Protein of u 41.7 68 0.0015 24.5 4.8 36 242-277 2-37 (62)
80 TIGR00927 2A1904 K+-dependent 41.6 3.5E+02 0.0076 31.6 12.2 94 150-251 470-565 (1096)
81 PRK03818 putative transporter; 40.8 2E+02 0.0044 31.1 10.2 54 306-364 462-515 (552)
82 PF04284 DUF441: Protein of un 40.6 1.4E+02 0.003 26.5 7.4 76 104-187 38-113 (140)
83 PRK12460 2-keto-3-deoxyglucona 39.0 1.1E+02 0.0024 30.7 7.3 19 253-271 14-32 (312)
84 PRK03659 glutathione-regulated 38.0 5.7E+02 0.012 27.9 14.6 121 95-234 254-376 (601)
85 COG4666 TRAP-type uncharacteri 35.3 6.6E+02 0.014 27.9 12.9 130 111-270 458-592 (642)
86 PF03390 2HCT: 2-hydroxycarbox 33.8 3.6E+02 0.0079 28.2 10.3 56 134-194 322-377 (414)
87 TIGR00793 kdgT 2-keto-3-deoxyg 33.5 75 0.0016 31.9 5.0 25 253-277 14-38 (314)
88 PRK11007 PTS system trehalose( 33.4 6.1E+02 0.013 27.0 12.2 34 157-194 168-202 (473)
89 TIGR00783 ccs citrate carrier 32.7 5.6E+02 0.012 26.2 22.1 108 111-233 26-143 (347)
90 TIGR00698 conserved hypothetic 31.7 5.6E+02 0.012 26.0 18.7 61 173-235 112-176 (335)
91 PF11293 DUF3094: Protein of u 30.3 14 0.00031 27.4 -0.4 42 76-125 5-46 (55)
92 COG3763 Uncharacterized protei 30.3 97 0.0021 24.3 4.1 44 312-355 8-56 (71)
93 PRK04972 putative transporter; 28.4 5.1E+02 0.011 28.1 10.8 96 255-362 41-140 (558)
94 KOG2722 Predicted membrane pro 28.0 2.1E+02 0.0045 29.7 7.2 76 314-393 82-166 (408)
95 PF01943 Polysacc_synt: Polysa 27.6 4.7E+02 0.01 23.7 14.2 62 210-273 6-69 (273)
96 PRK01844 hypothetical protein; 27.5 1.1E+02 0.0025 24.0 4.1 43 312-354 8-55 (72)
97 PRK03818 putative transporter; 27.3 3.8E+02 0.0083 29.0 9.6 102 255-361 34-140 (552)
98 TIGR00783 ccs citrate carrier 25.3 5.2E+02 0.011 26.4 9.6 56 134-194 255-310 (347)
99 PF13955 Fst_toxin: Toxin Fst, 24.4 1.2E+02 0.0027 18.2 2.9 15 253-267 3-17 (21)
100 TIGR01992 PTS-IIBC-Tre PTS sys 24.0 8.7E+02 0.019 25.6 11.6 47 349-397 318-365 (462)
101 PRK00523 hypothetical protein; 23.9 1.5E+02 0.0032 23.4 4.1 43 313-355 10-57 (72)
102 PF03616 Glt_symporter: Sodium 23.4 8E+02 0.017 25.0 23.7 102 162-270 109-242 (368)
103 TIGR02230 ATPase_gene1 F0F1-AT 22.5 3.7E+02 0.0081 22.5 6.6 27 244-270 42-68 (100)
104 COG1593 DctQ TRAP-type C4-dica 21.9 9E+02 0.02 25.1 15.3 84 96-184 156-258 (379)
105 PRK09292 Na(+)-translocating N 20.8 7.2E+02 0.016 23.5 14.1 33 257-289 83-115 (209)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=2.3e-52 Score=407.65 Aligned_cols=287 Identities=34% Similarity=0.558 Sum_probs=266.9
Q ss_pred HHHH-HHHHhHHHHHHHHHHHHHhhcCCCCccc-----------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHH
Q 015905 101 VNIL-KQSNSFLPHVVLGSTMLALVFPPSFTWF-----------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPI 162 (398)
Q Consensus 101 ~~~l-~~~~~~l~~~il~~~~lg~~~P~~~~~l-----------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPl 162 (398)
.+.+ ....+.+++|+++.+.++...|+.+.|+ +++.+|+++.+||||.+++++++||++||+
T Consensus 4 ~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl 83 (319)
T COG0385 4 LRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL 83 (319)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3444 2334558999999999999999999886 399999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC
Q 015905 163 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD 242 (398)
Q Consensus 163 la~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd 242 (398)
++|+++ ..+++||+++.|+++++|||||+.||+||+++|||+ ++|+++|.+||+++++++|+++.++.|+.+++|
T Consensus 84 la~~~~----~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~ 158 (319)
T COG0385 84 LALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVD 158 (319)
T ss_pred HHHHHH----HHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999 578899999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 015905 243 VKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAF 322 (398)
Q Consensus 243 ~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf 322 (398)
.+++++++++++++|+++|+++|++.|++.++.++.+++++..+++++++..++.+.+.+.+. +..+.+++++++.++|
T Consensus 159 ~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~ 237 (319)
T COG0385 159 VGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGL 237 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888877764 4567788999999999
Q ss_pred HHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905 323 VAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 323 ~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~valp~~iy~v~q~i~g~~la~~~~~~~ 397 (398)
..||+.+| +++.++ +|++|+++|+||||.++|+++|..||++|.+++|.++|++||++.+++++.+|+||.
T Consensus 238 ~~gy~~ar-~~g~~~---a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~ 308 (319)
T COG0385 238 LLGYFGAR-LLGFDK---ADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI 308 (319)
T ss_pred HHHHHHHH-HhCCCh---hheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998 578886 899999999999999999999999776699999999999999999999999999974
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=5.2e-43 Score=348.30 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=212.7
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhH
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLS 212 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLs 212 (398)
++++||+++.+||||.+..+++.||+++|+++|++++ .+++++|++++|+++++|||||++||+||+++|||+ ++|
T Consensus 59 ~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~---l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-als 134 (328)
T TIGR00832 59 KVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAW---LFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYT 134 (328)
T ss_pred cCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHH
Confidence 4899999999999999999999999999999999995 346999999999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HhcCc
Q 015905 213 IVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPF 278 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ll~g--------~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~-----~a~-~l~~~ 278 (398)
+++|.+||+++++++|++++++.| +.+++|.++++++++.++++|+++|+++|++.++ +.+ +..+.
T Consensus 135 v~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~ 214 (328)
T TIGR00832 135 LVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPK 214 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhh
Confidence 999999999999999999999877 4579999999999999999999999999999984 333 77788
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH
Q 015905 279 LPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL 356 (398)
Q Consensus 279 l~~~s~l~llliv~~~~~~n~~~i~~~~~--~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~ 356 (398)
++.++.+++.+++...++.|++.+.+... ..+.+++++++.++|.+||+++| .++.++ +|+||+++|+|+||.+
T Consensus 215 ~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r-~~~l~~---~~~~a~~~e~g~qN~~ 290 (328)
T TIGR00832 215 ISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAK-KLGLPY---SITAPAAFTGASNNFE 290 (328)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCh---hhhhhheehhhhhhHH
Confidence 88888888889888888888887776532 23344678899999999999997 568876 8999999999999999
Q ss_pred HHHHHHHHhCCCCcchhHHHHHHHH
Q 015905 357 LALALANRFFQDPLVSVPPAISTVI 381 (398)
Q Consensus 357 Lal~LA~~~F~~p~valp~~iy~v~ 381 (398)
+|+++|.++|++++.+.++++|...
T Consensus 291 lai~lA~~~f~~~~~~a~~~~~~~l 315 (328)
T TIGR00832 291 LAIAVAISLFGLNSGAALATVVGPL 315 (328)
T ss_pred HHHHHHHHhCCCCcccHHHHHhhhh
Confidence 9999999999875555555555553
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=2e-41 Score=331.15 Aligned_cols=262 Identities=30% Similarity=0.471 Sum_probs=239.3
Q ss_pred HHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchh
Q 015905 116 LGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQ 195 (398)
Q Consensus 116 l~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~ 195 (398)
+..++++++. +++.+|+++.++|||.+..+++.|++++|+++|+++ ..++++++.+.|+++++||||++
T Consensus 14 l~~~m~~~G~-------~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~~P~~~ 82 (286)
T TIGR00841 14 LFLIMFSMGC-------TLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGCCPGGT 82 (286)
T ss_pred HHHHHHHccC-------CCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheeeCCCch
Confidence 5556677776 889999999999999999999999999999999998 57899999999999999999999
Q ss_pred hHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015905 196 LSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 271 (398)
Q Consensus 196 ~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v----~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~ 271 (398)
+|++||+++|||. +++..++.++|+++++++|+++.++.+... ++|+++++++ +.++++|+++|+++|++.|++
T Consensus 83 ~s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~ 160 (286)
T TIGR00841 83 ASNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQI 160 (286)
T ss_pred HHHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999 899999999999999999999999976544 4999999999 889999999999999999999
Q ss_pred HHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecc
Q 015905 272 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 351 (398)
Q Consensus 272 a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG 351 (398)
+++.++ .+.++.+.+.+++...++.+.+.+.+. .+.++++++++++++|.+||+++| .++.++ +|+||+++|+|
T Consensus 161 ~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~-~~~l~~---~~~~t~~~~~g 234 (286)
T TIGR00841 161 AKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAK-LAGLPW---ARCRTISIEVG 234 (286)
T ss_pred HHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH---hhheeeeeeee
Confidence 888888 889999988888888888887777664 456778899999999999999997 467776 79999999999
Q ss_pred cccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905 352 MQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 352 ~rN~~Lal~LA~~~F~~p~valp~~iy~v~q~i~g~~la~~~~~~~ 397 (398)
+||+++|+++|.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus 235 ~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 235 MQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred cccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 89999999999999999999999998763
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=7.9e-36 Score=295.08 Aligned_cols=280 Identities=22% Similarity=0.341 Sum_probs=245.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCcc----------------------cccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHH
Q 015905 109 SFLPHVVLGSTMLALVFPPSFTW----------------------FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 166 (398)
Q Consensus 109 ~~l~~~il~~~~lg~~~P~~~~~----------------------l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~ 166 (398)
+|+++.+++++.+|+.+|+.... ++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999999987542 24999999999999999999999999999999999
Q ss_pred HHhhhhhccCCChhHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 015905 167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK 244 (398)
Q Consensus 167 l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv-~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~-g~~v~vd~~ 244 (398)
+.++. ...++++++.|+++++|+|++..|++ ||+.+|||. ++++.++.++|+++++++|+++.++. |+.+++|..
T Consensus 81 ~~~l~--~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~ 157 (313)
T PF13593_consen 81 LSRLF--PAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA 157 (313)
T ss_pred HHHHh--hccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence 98521 12478999999999999999998874 999999999 89999999999999999999999999 788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhh-hhhhhhhh----HHHHHHHHHHHH
Q 015905 245 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHL 319 (398)
Q Consensus 245 ~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~-~~i~~~~~----~~i~la~~ll~l 319 (398)
++++++...+++|+++|+++|++.+++.+|.++.++.++..+++++++..++... +...+... ..+....+.++.
T Consensus 158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887651 22222111 233455777888
Q ss_pred HHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCC-C---cchhHHHHHHHHHHHHHHHHHHHHhh
Q 015905 320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK 395 (398)
Q Consensus 320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~-p---~valp~~iy~v~q~i~g~~la~~~~~ 395 (398)
..+.++|..+| .++.++ +|++++.|++++||.++|+.++...|++ | .+.+|.++||..|.++++.++.+|+|
T Consensus 238 ~~l~~~~~~~r-~~~~~~---~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 238 VVLVLGWLAAR-LLGFSR---PDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred HHHHHHHHHHh-hcCCCh---hhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999997 468776 8999999999999999999999999984 4 57899999999999999999999976
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-31 Score=258.86 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=250.2
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHH----hhcCCCCccc-------------------------ccCHHHHHHHHhchh
Q 015905 97 EFSLVNILKQSNSFLPHVVLGSTMLA----LVFPPSFTWF-------------------------TASEKDFIEAFKRPA 147 (398)
Q Consensus 97 ~~~~~~~l~~~~~~l~~~il~~~~lg----~~~P~~~~~l-------------------------~l~~~dl~~~l~~P~ 147 (398)
+++..+.+++++|+++.|+..|..+| ..+|+.++.+ ++|.|+++++.|+||
T Consensus 2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k 81 (342)
T COG0798 2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK 81 (342)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch
Confidence 45667889999999998887777655 4566644332 399999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 015905 148 AIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 227 (398)
Q Consensus 148 ~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~ 227 (398)
.++..++.||++.|+++|++++ .+++..|++.+|++++|.+||..++.+|+++++||. +++++++.++.++++++.
T Consensus 82 ~L~lsL~~Nwii~P~lm~~la~---~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y 157 (342)
T COG0798 82 PLILSLFVNWIIGPLLMFALAW---FFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLY 157 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999997 355888899999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHhcCcCChhHHHHHHHHHHHHHHhhhh
Q 015905 228 PLLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI------CNAIRPFLPPLSVLVTACCVGAPLAINIE 300 (398)
Q Consensus 228 Plll~ll~g~~-v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~------a~~l~~~l~~~s~l~llliv~~~~~~n~~ 300 (398)
|.+.++|.|.. ++++++++.+++++.+.+|+++|++.|+...|+ .++..|..++++..++++.++..|+.+.+
T Consensus 158 ~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~ 237 (342)
T COG0798 158 APLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGE 237 (342)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHH
Confidence 99999998864 899999999999999999999999999986542 46788899999999999999999999999
Q ss_pred hhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHH
Q 015905 301 SVMSPFGL--TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAI 377 (398)
Q Consensus 301 ~i~~~~~~--~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~-~p~valp~~i 377 (398)
.+.+++.. .+.+..++.....+.++|+++|. .+.++ +++.+++++++.+|..+|+++|.+.|+ +..+|+.+++
T Consensus 238 ~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~-lgl~y---~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vi 313 (342)
T COG0798 238 QIVEQPLDILLIAIPLLIYFLLMFFISYFIAKA-LGLPY---EDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVV 313 (342)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCh---hhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhc
Confidence 99887542 34455777788899999999974 68887 899999999999999999999999998 6678888888
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015905 378 STVIMSLMGFFLVMLWA 394 (398)
Q Consensus 378 y~v~q~i~g~~la~~~~ 394 (398)
..+++...=-.++..++
T Consensus 314 gpLvEVpvml~lV~v~~ 330 (342)
T COG0798 314 GPLVEVPVMLGLVKVAL 330 (342)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 88877765555554443
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.97 E-value=1.4e-29 Score=233.00 Aligned_cols=179 Identities=29% Similarity=0.531 Sum_probs=153.1
Q ss_pred HHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905 115 VLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194 (398)
Q Consensus 115 il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg 194 (398)
.+..+++++++ ++++||+++..||||.+..++++||+++|+++|++++ .++++++++++|+++++||||+
T Consensus 3 ~l~~~mf~~gl-------~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~ 72 (187)
T PF01758_consen 3 LLFLMMFSMGL-------SLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGG 72 (187)
T ss_dssp HHHHHHHHHHH-------C--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-
T ss_pred hhhHHHHHhhh-------cccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcH
Confidence 34556777776 8999999999999999999999999999999999984 5789999999999999999999
Q ss_pred hhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 015905 195 QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP-- 269 (398)
Q Consensus 195 ~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd---~~~i~~~Ll~~VllPl~lG~llr~~~p-- 269 (398)
++||+||+++|||. ++++++|.++++++++++|+++.++.+...++| .++++.+++.++++|+++|+++|++.|
T Consensus 73 ~~s~~~t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~ 151 (187)
T PF01758_consen 73 PASNVFTYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPRE 151 (187)
T ss_dssp THHHHHHHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-G
T ss_pred HHHHHHHHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHH
Confidence 99999999999999 899999999999999999999999998877777 999999999999999999999999999
Q ss_pred HHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhh
Q 015905 270 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMS 304 (398)
Q Consensus 270 ~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~ 304 (398)
+..+++++..+.++.+++++++...++.|.+.+.+
T Consensus 152 ~~~~~~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~ 186 (187)
T PF01758_consen 152 KFARRLKPFLKPLSFILLLLIIVLIFASNASVIAS 186 (187)
T ss_dssp GG-HHHHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence 88899999999999999999999888888776543
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.2e-28 Score=242.72 Aligned_cols=238 Identities=46% Similarity=0.703 Sum_probs=213.7
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhc-CCCchhh
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT-DPPLAPL 211 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la-~Gd~aaL 211 (398)
+.|.+|+++.++||+.+.+|++.||++||+.+|.++ ..+.+|...++|++++.|++++..++..+++. +||+ .+
T Consensus 129 ~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~----~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~l 203 (371)
T KOG2718|consen 129 KLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS----KVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TL 203 (371)
T ss_pred CccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh----hHhhCCccccceeEEEEeccCCcchhhheeecCCcch-hh
Confidence 699999999999999999999999999999999998 57888888878999999998888887665555 9999 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHH
Q 015905 212 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV 291 (398)
Q Consensus 212 sl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv 291 (398)
++.||.++|+.+++++|++..++.+..++.|...+..+++..+.+|+++|.++|+++|+....+.+..+.++.....+++
T Consensus 204 silmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~ 283 (371)
T KOG2718|consen 204 SILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCL 283 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhh
Confidence 99999999999999999999999888899999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCCCcc
Q 015905 292 GAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLV 371 (398)
Q Consensus 292 ~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~v 371 (398)
......|.+.+.. .++.++.++..+++.||..||+.++.. -.| ++++||+++|+||||..+++++++..++||.+
T Consensus 284 ~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~~---~~~-~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~ 358 (371)
T KOG2718|consen 284 AFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFSP---LDD-VATARTISIETGMQNSLLALALATKHLQDPLV 358 (371)
T ss_pred cCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc---cch-hhhhcchHHHhccchhHHHHHHhhcccCCcee
Confidence 8888888877776 788999999999999999999986322 221 25899999999999999999999999999998
Q ss_pred hhHHHHHHH
Q 015905 372 SVPPAISTV 380 (398)
Q Consensus 372 alp~~iy~v 380 (398)
+.|++...+
T Consensus 359 ~~~~~~s~v 367 (371)
T KOG2718|consen 359 VVPPATSSV 367 (371)
T ss_pred eeccchhhh
Confidence 888766544
No 8
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.87 E-value=2.6e-08 Score=92.44 Aligned_cols=173 Identities=14% Similarity=0.180 Sum_probs=134.8
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHhhcCCCCc-----------------------ccccCHHHHHHHHhchhHHHHHHHH
Q 015905 100 LVNILKQS-NSFLPHVVLGSTMLALVFPPSFT-----------------------WFTASEKDFIEAFKRPAAIFAGYVG 155 (398)
Q Consensus 100 ~~~~l~~~-~~~l~~~il~~~~lg~~~P~~~~-----------------------~l~l~~~dl~~~l~~P~~l~~gl~~ 155 (398)
+++..++. ++|+..-+.++...+-.-|+... .++++.|++..+.++|+..+++++.
T Consensus 13 ~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~ 92 (287)
T KOG4821|consen 13 AHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILIL 92 (287)
T ss_pred HHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHH
Confidence 44445555 46777777777777777776531 1249999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 156 QFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 156 qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv-~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll 234 (398)
...+.|...|++.... ..-+.+.++..|+.+.+|.|+...|++ .|..+|||.+++.+.-...+.++.+...|-....+
T Consensus 93 ~Ll~tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~L 171 (287)
T KOG4821|consen 93 SLLITPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQML 171 (287)
T ss_pred HHHHhHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999987421 334577899999999999999999997 89999999866666667777888888888888776
Q ss_pred hCC------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015905 235 IGK------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 273 (398)
Q Consensus 235 ~g~------------~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~ 273 (398)
+.. .+-.-+.-++++....+++|...|...+..+|+-+.
T Consensus 172 L~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (287)
T KOG4821|consen 172 LNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA 222 (287)
T ss_pred HccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence 421 222334456677778899999999999999887443
No 9
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.43 E-value=9.5e-08 Score=96.33 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=160.2
Q ss_pred ccccCHHHHHHHHhchhHHHHHHHHHHh-HHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCch
Q 015905 131 WFTASEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 209 (398)
Q Consensus 131 ~l~l~~~dl~~~l~~P~~l~~gl~~qfv-imPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~a 209 (398)
.++++.++++++.++++.+...+..|+- ++|...+... ..+..++..+.....+.|+|++..+|.++.-.++|+
T Consensus 58 ~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~- 132 (371)
T KOG2718|consen 58 GCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDM- 132 (371)
T ss_pred ccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHHHhcCccH-
Confidence 3467888899999999999999999999 9999999998 577888888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHH
Q 015905 210 PLSIVMTSLSTATAVFVTP-LLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSV 284 (398)
Q Consensus 210 aLsl~mt~istlla~~~~P-lll~ll~----g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~ 284 (398)
.+...++.-.+.+++.++| ++++=+. +....+|...-..-++..-+.|.-.|..+++..++-...+......++.
T Consensus 133 ~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~st 212 (371)
T KOG2718|consen 133 DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTIST 212 (371)
T ss_pred HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHH
Confidence 7999999999999988888 3322121 2233344333122233466789999999998876544444444433443
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHH
Q 015905 285 LVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALA 362 (398)
Q Consensus 285 l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~g--f~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA 362 (398)
++.+++.-..-....+.+.......+ ..-.+...+ +.+|+++.+. -.+++..++.++||.+++.++-
T Consensus 213 v~avi~~pl~s~~l~~~l~~~d~~~v--~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~~vsv~~t~l 281 (371)
T KOG2718|consen 213 VLAVILTPLLSILLGRALIPVDALGV--IASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLPPVSVCLTIL 281 (371)
T ss_pred HHHHHHHHHHHHhhchhhhcccchhh--hhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCCchHHHhhhh
Confidence 32222111111111222222112112 223445555 8888877531 3568889999999999999999
Q ss_pred HHhCCCCcc----hhHHHHHHHHHHHHHH
Q 015905 363 NRFFQDPLV----SVPPAISTVIMSLMGF 387 (398)
Q Consensus 363 ~~~F~~p~v----alp~~iy~v~q~i~g~ 387 (398)
.-.|+ |.. -.. ..|.++|.-...
T Consensus 282 ~~~~p-~~~n~~~~~~-~~~~i~~~~~~l 308 (371)
T KOG2718|consen 282 CLAFP-PGENGYLFLF-FGYQILLLGAAL 308 (371)
T ss_pred hhcCC-hhhhhHHHHH-HHHHHHHHHHHH
Confidence 88886 432 222 445555544443
No 10
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=98.29 E-value=1.4e-05 Score=79.46 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=79.6
Q ss_pred hchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 015905 144 KRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 223 (398)
Q Consensus 144 ~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla 223 (398)
++++......+..++++|+++++++ ..++++++.....++++++|.+..+.+++..-|+|. .++...+.++|+++
T Consensus 235 ~~~~~~~~~~~~klil~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls 309 (321)
T TIGR00946 235 LGVRDAILALIVRFLVQPAVMAGIS----KLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLS 309 (321)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHH
Confidence 4557788888999999999999998 578999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHh
Q 015905 224 VFVTPLLSLLL 234 (398)
Q Consensus 224 ~~~~Plll~ll 234 (398)
.+++|++++++
T Consensus 310 ~~tlp~~~~l~ 320 (321)
T TIGR00946 310 LISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 11
>PRK09903 putative transporter YfdV; Provisional
Probab=97.98 E-value=0.00011 Score=73.06 Aligned_cols=83 Identities=13% Similarity=0.039 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 015905 147 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 226 (398)
Q Consensus 147 ~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~ 226 (398)
+....+.+..+++.|++++++. ..+++++....-+++++++|.+..+.+++..-|+|. .++...+.+||+++.++
T Consensus 228 ~~~~~~~~~Kli~~P~i~~~~~----~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iT 302 (314)
T PRK09903 228 AEIAYNTFLKLILMPLALLLVG----MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHH
Confidence 3455677889999999998876 467999999989999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHh
Q 015905 227 TPLLSLLL 234 (398)
Q Consensus 227 ~Plll~ll 234 (398)
+|++++++
T Consensus 303 lpl~~~l~ 310 (314)
T PRK09903 303 APLWIYVS 310 (314)
T ss_pred HHHHHHHH
Confidence 99999875
No 12
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.80 E-value=0.00084 Score=66.50 Aligned_cols=254 Identities=17% Similarity=0.228 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHH
Q 015905 112 PHVVLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 167 (398)
Q Consensus 112 ~~~il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l 167 (398)
.+=+++++.+.-++|+.+..= +++.|+-.+.+||-.-+ ++..+++--++++++
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~ 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLV 92 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHH
Confidence 333566677777888764210 38888888888875433 234666666777777
Q ss_pred HhhhhhccCCChhHHHHHHHHh---c---CCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--cc
Q 015905 168 GTISVSVFGLPTPIGAGIMLVS---C---VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RL 239 (398)
Q Consensus 168 ~~~~~~~~~l~~~la~GliL~~---~---~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v 239 (398)
+ ++++.+.-. |+-.++ + +=|+.....+.+.-+-++ .-+.+.+.+ --. |+...+-+|. -.
T Consensus 93 ~----~~~g~~g~~--Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d-~gA~~~~sl--~~G----Pf~tm~aLga~gLA 159 (312)
T PRK12460 93 G----KFFGAEGIF--GLSGLAIVAAMSNSNGGLYAALMGEFGDERD-VGAISILSL--NDG----PFFTMLALGAAGLA 159 (312)
T ss_pred H----HHcCccccc--chHHHHHHHHHhcCcHHHHHHHHHHcCCHhh-hhHHhhhhh--ccC----cHHHHHHHHHHHHh
Confidence 7 567765522 322222 2 123333333444433322 233333322 223 3333333232 13
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905 240 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL 319 (398)
Q Consensus 240 ~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l 319 (398)
++|+.. +. -.++|+++|++++...+++.+.+++-.+..- .+.++..-+..|-+++.+ .|+.-++..++...
T Consensus 160 ~ip~~~----lv-~lilpILiGmilGNld~~~~~~l~~Gi~f~I---~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~ 230 (312)
T PRK12460 160 NIPIMA----LV-AALLPLVLGMILGNLDPDMRKFLTKGGPLLI---PFFAFALGAGINLSMLLQ-AGLAGILLGVLVTI 230 (312)
T ss_pred cCChHH----HH-HHHHHHHHHHHHhccchhhHHHHhccceEeH---HHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHH
Confidence 456543 23 3799999999999988888888877765411 111111111234444554 35555555666777
Q ss_pred HHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcch---hHHHHHHHHHHHHHHHHHHHH
Q 015905 320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVS---VPPAISTVIMSLMGFFLVMLW 393 (398)
Q Consensus 320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~va---lp~~iy~v~q~i~g~~la~~~ 393 (398)
+.+..+|+++| +++.++ +.++...+..-|. .-+.+++.. .+ .|.+. .=++-..++..+...++..||
T Consensus 231 ~t~~~~~~i~r-llg~~~-----~~g~li~stAGnAIcgpAAVaAadP~~-~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 231 VTGFFNIFADR-LVGGTG-----IAGAAASSTAGNAVATPLAIAAADPSL-APVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred HHHHHHHHHHH-HhCCCh-----hHHHHHHHHhhHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999997 456542 2333333223343 222223322 22 12211 112334456667777777777
Q ss_pred hhcc
Q 015905 394 AKKS 397 (398)
Q Consensus 394 ~~~~ 397 (398)
.||.
T Consensus 304 ~k~~ 307 (312)
T PRK12460 304 AKKE 307 (312)
T ss_pred HHHh
Confidence 6653
No 13
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.71 E-value=0.0037 Score=61.88 Aligned_cols=267 Identities=18% Similarity=0.285 Sum_probs=141.2
Q ss_pred HHHHHHHhH----HHHHHHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHH
Q 015905 102 NILKQSNSF----LPHVVLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGY 153 (398)
Q Consensus 102 ~~l~~~~~~----l~~~il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl 153 (398)
++++.++|. +.+=+++++++.-++|+.++.+ +++.|+..+.+||-..++
T Consensus 2 kI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll--- 78 (314)
T PF03812_consen 2 KIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLL--- 78 (314)
T ss_pred ChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHH---
Confidence 455555554 5555666777777888776532 389999999999854443
Q ss_pred HHHHhHHHHHHHHHHhhhhhccCCCh---hHHHHHHHHhcC------CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 015905 154 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSCV------SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAV 224 (398)
Q Consensus 154 ~~qfvimPlla~~l~~~~~~~~~l~~---~la~GliL~~~~------Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~ 224 (398)
+..+++-=+++++++ ++++.+. ....|+-.++.. =|+.....+...-+-++ .-+.. ++++
T Consensus 79 ~~K~~~~~~lgl~~~----~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~~------i~sl 147 (314)
T PF03812_consen 79 LVKFIIGALLGLLVG----KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAFS------ILSL 147 (314)
T ss_pred HHHHHHHHHHHHHHH----HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHHH------HHHh
Confidence 457777767777777 4666553 222333222221 22223333333322222 22222 3344
Q ss_pred HHHHHHHHHhhC--CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhh
Q 015905 225 FVTPLLSLLLIG--KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESV 302 (398)
Q Consensus 225 ~~~Plll~ll~g--~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i 302 (398)
.--|+...+.+| ...++|+.. +.-.++|+++|+++-..-|++.+.+.|-.+.+--+ +.+.++ -..|-..+
T Consensus 148 ~~GPf~tMl~LG~sG~a~ip~~~-----lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF-~~f~lG--a~inl~~i 219 (314)
T PF03812_consen 148 NDGPFFTMLALGASGLANIPWMS-----LVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPF-FGFALG--AGINLSNI 219 (314)
T ss_pred hhhHHHHHHHHhhccccCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeeh-hhhhhc--CCCCHHHH
Confidence 445665555555 235788765 34678999999999999999888777765442211 111111 02233344
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---H
Q 015905 303 MSPFGL-TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---P 375 (398)
Q Consensus 303 ~~~~~~-~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~valp---~ 375 (398)
.+. +. .+++ .++..++.....|+.-|.+.+.+ .....+..+..-|. +.-.++|.. .| .|.+... +
T Consensus 220 ~~a-Gl~GIlL-gv~~~~vtg~~~~~~dr~i~~~~-----g~aG~A~sstAGnavatPaaiA~~dP~~-~~~~~~ATaQv 291 (314)
T PF03812_consen 220 IKA-GLSGILL-GVIVVVVTGIPLYLADRLILKGN-----GVAGAAISSTAGNAVATPAAIAAADPSF-APYAASATAQV 291 (314)
T ss_pred HHh-CcchHHH-HHHHHHHHhHHHHHHHHHHcCCC-----CceeehHHhhhhhhhhhhHHHHHhChhh-HhhHHHHHHHH
Confidence 432 22 2333 33333344444566666443322 22333444433343 333344432 22 2322211 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 015905 376 AISTVIMSLMGFFLVMLWAKKSE 398 (398)
Q Consensus 376 ~iy~v~q~i~g~~la~~~~~~~~ 398 (398)
+...++..+...++..+|.||-|
T Consensus 292 AaavIvTail~P~lt~~~~kr~k 314 (314)
T PF03812_consen 292 AAAVIVTAILTPILTSWWAKRFK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777788888889988754
No 14
>COG0679 Predicted permeases [General function prediction only]
Probab=97.71 E-value=0.00071 Score=67.31 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=78.5
Q ss_pred hchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 015905 144 KRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 223 (398)
Q Consensus 144 ~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla 223 (398)
.+++.........++++|+++++.+ .+++++++....+++++++|++..+.+++...++|. .++...+.++|+++
T Consensus 222 ~~~~~~~~~~~~kll~~Pl~~~~~~----~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls 296 (311)
T COG0679 222 SKPPIILIALSLKLLLAPLVALLVA----KLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLS 296 (311)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH----HHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 3456666777779999999999988 689999998888999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHHhh
Q 015905 224 VFVTPLLSLLLI 235 (398)
Q Consensus 224 ~~~~Plll~ll~ 235 (398)
.+++|.+...+.
T Consensus 297 ~~t~p~~~~~l~ 308 (311)
T COG0679 297 LLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHh
Confidence 999999988774
No 15
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.62 E-value=0.00089 Score=67.74 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 015905 147 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 226 (398)
Q Consensus 147 ~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~ 226 (398)
+......+..++++|++++++. ..++++++....+++.+++|.+..+.+++...+.|. ..+.....+++++++++
T Consensus 306 ~~~~~~~~~rlii~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~ 380 (385)
T PF03547_consen 306 KPSIIAVLVRLIILPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPT 380 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHH
Confidence 3444568889999999999997 578899999989999999999999999999999998 78889999999999999
Q ss_pred HHHHH
Q 015905 227 TPLLS 231 (398)
Q Consensus 227 ~Plll 231 (398)
+|+|+
T Consensus 381 ~~~~~ 385 (385)
T PF03547_consen 381 LPLWI 385 (385)
T ss_pred HHHHC
Confidence 99973
No 16
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.29 E-value=0.24 Score=49.65 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=137.7
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS 212 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs 212 (398)
++++.+.+....+.......+...+..-+.+|.+. +..+.|..-+ +.++.|||...- ++..-.|+|. ..-
T Consensus 42 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~TA----~~~~~PGg~s~m~~la~~~gad~-~~V 112 (318)
T PF05145_consen 42 FTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRATA----FFASMPGGLSEMVALAEEYGADT-RRV 112 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhHH----HHHcCCccHHHHHHHHHHcCCCh-hhh
Confidence 48888888888888888777777777777778776 5677876655 589999998764 5888889998 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC----ccc-------cChHHHHHHHHHHHHHHHHHHHHHHHH-hHH----------
Q 015905 213 IVMTSLSTATAVFVTPLLSLLLIGK----RLP-------VDVKGMVSSILQIVVVPIAAGLLLNRF-FPR---------- 270 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ll~g~----~v~-------vd~~~i~~~Ll~~VllPl~lG~llr~~-~p~---------- 270 (398)
..+..+=-++-++.+|+...++.+. ..+ .|.. .+...+.+=.+.|.+.|+. .|.
T Consensus 113 a~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~ 188 (318)
T PF05145_consen 113 ALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWL----WLALLALAALAGGLLARRLRIPAPWLLGPMLVS 188 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHH----HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8888888888888999999887653 111 2222 3333444445556666654 342
Q ss_pred -HHH---HhcCcCChhHHHHHHHHHHHHHHhh--hhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccch
Q 015905 271 -ICN---AIRPFLPPLSVLVTACCVGAPLAIN--IESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 342 (398)
Q Consensus 271 -~a~---~l~~~l~~~s~l~llliv~~~~~~n--~~~i~~--~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~ 342 (398)
..+ ..+...|..-...-.++++..++.. .+.+.+ ......++..+++...++..+|.+++ +.+.+. .
T Consensus 189 a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~-~~~~~~----~ 263 (318)
T PF05145_consen 189 AILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR-LTGIDF----L 263 (318)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCH----H
Confidence 011 1122333333333333344444432 122221 11222344455666778888998886 455443 2
Q ss_pred hhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH----HHHHHHHHHHHHHhhcc
Q 015905 343 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV----IMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 343 ~~tl~~~tG~rN~~Lal~LA~~~F~~p~valp~~iy~v----~q~i~g~~la~~~~~~~ 397 (398)
..-+++.=|--+. +.+.....+ -+.++.. .+++ .-.+....++.+|.|++
T Consensus 264 t~~La~aPGGl~e---M~l~A~~l~-~d~~~V~-~~q~~Rl~~v~~~~p~~~r~~~r~~ 317 (318)
T PF05145_consen 264 TALLATAPGGLAE---MALIALALG-ADVAFVA-AHQVVRLLFVLLLAPFIARWLRRRR 317 (318)
T ss_pred HHHHHhCCccHHH---HHHHHHHcC-CChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333332221 112222332 2233322 3444 33445566777887776
No 17
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.04 E-value=0.0077 Score=59.38 Aligned_cols=255 Identities=14% Similarity=0.206 Sum_probs=131.1
Q ss_pred HHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhh
Q 015905 115 VLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 170 (398)
Q Consensus 115 il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~ 170 (398)
+++++.+.-++|+.+..+ +++.|+-.+.+||-.-+ ++..+++--+++++++
T Consensus 19 Lllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~-- 93 (314)
T TIGR00793 19 LFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS-- 93 (314)
T ss_pred HHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH--
Confidence 556667777778775432 27888888888874432 2346666667777777
Q ss_pred hhhccCCCh---hHHHHHHHHhcC------CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--cc
Q 015905 171 SVSVFGLPT---PIGAGIMLVSCV------SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RL 239 (398)
Q Consensus 171 ~~~~~~l~~---~la~GliL~~~~------Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v 239 (398)
++++.+. .+..|+-.++.. =|+.....+.+.-+-++ .-+.+.+ ++---|+...+.+|. -.
T Consensus 94 --~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D-~gA~~i~------sl~~GPf~TMi~LG~sGlA 164 (314)
T TIGR00793 94 --RIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEE-AGAFVLM------SLESGPLMTMVILGTAGIA 164 (314)
T ss_pred --HHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhh-hhhhhhh------hhccCcHHHHHHHhhccCC
Confidence 4666554 222233222222 23333333444433322 2333332 223345555555553 35
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905 240 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL 319 (398)
Q Consensus 240 ~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l 319 (398)
++|+.. +.-.++|+++|+++-..-|++.+.+.+-.+.+--+ +.+-++ -..|-+.+++. +..-++..++..+
T Consensus 165 ~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpF-f~FaLG--aginl~~i~~a-Gl~GIlLGl~v~~ 235 (314)
T TIGR00793 165 SFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPF-FAFALG--NTIDLGVIIQT-GLLGILLGVSVII 235 (314)
T ss_pred CCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeeh-hhhhhc--CCCCHHHHHHh-CcchHHHHHHHHH
Confidence 788765 34678999999999999998888877765543211 111110 12333444442 2221222333334
Q ss_pred HHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHHHHH
Q 015905 320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLVMLW 393 (398)
Q Consensus 320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~valp---~~iy~v~q~i~g~~la~~~ 393 (398)
+.....|+.-|.+.+.+ .....+..+..-|. +.-.++|.. .|. |.+... ++-..++..+...++..||
T Consensus 236 vtG~~~~~~dr~~~g~~-----g~aG~A~sstAGnAvatPaavA~adPs~~-~~a~~ATaqvAaavivTaiL~Pilta~~ 309 (314)
T TIGR00793 236 LTGIPLILADKFIGGGD-----GTAGIAASSSAGAAVATPVLIAEMVPAFK-PVAPAATALVATSVIVTSLLVPIATVWW 309 (314)
T ss_pred HHhHHHHHHHHHhcCCC-----CchhhHHHHHHHHhhhhHHHHHHhChhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666432322 12233333333333 333334432 221 222111 2335567777888888899
Q ss_pred hhccC
Q 015905 394 AKKSE 398 (398)
Q Consensus 394 ~~~~~ 398 (398)
.||-|
T Consensus 310 ~kr~~ 314 (314)
T TIGR00793 310 SKKVK 314 (314)
T ss_pred HHhcC
Confidence 88854
No 18
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.87 E-value=0.52 Score=47.70 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=78.6
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhh
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPL 211 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaL 211 (398)
+++.+++....++|-.++..++......-+.+|.+.+ .-.+|...+ ..+++|||.+.- .+.+=-|.|. .+
T Consensus 74 ~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~-~~ 144 (352)
T COG3180 74 SLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSIAQDYGADL-RL 144 (352)
T ss_pred hcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHHHHHhCCCh-hH
Confidence 3799999999999998888888888888888998874 335776655 479999999775 5888889998 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q 015905 212 SIVMTSLSTATAVFVTPLLSLLLIG 236 (398)
Q Consensus 212 sl~mt~istlla~~~~Plll~ll~g 236 (398)
-..+..+=-+.-..+.|+....+.|
T Consensus 145 VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 145 VALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888889999999885
No 19
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.30 E-value=0.25 Score=49.70 Aligned_cols=235 Identities=16% Similarity=0.257 Sum_probs=113.6
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCCh---hHHHHHHH------HhcCCchhhHHHHHHhc
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIML------VSCVSGAQLSNYATFLT 204 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~---~la~GliL------~~~~Pgg~~Snv~T~la 204 (398)
++.++-...++|-..++. ..+.+--++++..+ .+++.+. +...|+.. +.-+=++.....++...
T Consensus 64 i~~~~~~~~l~~g~~l~~---~k~~~~~~~~~~~~----~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g 136 (326)
T PRK05274 64 INLRATGTVLKKGGTLLL---TKFAVAALVGVIAG----KFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYG 136 (326)
T ss_pred EeccccchhhhhchhHHH---HHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 788888888877444332 34555545556555 3444322 22222211 12222334444455554
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChh
Q 015905 205 DPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 282 (398)
Q Consensus 205 ~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~ 282 (398)
+... .-+...+.+.. -|....++++. ..+++..++.. +++|+++|+.++.+.+++.+...+-.+.+
T Consensus 137 ~~~d-~ga~i~lsl~~------Gp~~tM~lL~aagla~~p~~~li~-----allplliG~~lgnl~~~l~~~~~~Gi~~l 204 (326)
T PRK05274 137 TKED-AGAFVLMSLED------GPFMTMLALGAAGLASFPPPALVG-----AVLPLLVGFILGNLDPELRQFLGKAVPVL 204 (326)
T ss_pred CCCC-cchHHHHHHhh------hHHHHHHHHHhhCcccCCCchhhH-----HHHHHHHHHHHHhHHHhhHHHhcCCcEEE
Confidence 4322 22333322222 23333333332 23466555422 23999999999998888888887766552
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHH
Q 015905 283 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALAL 361 (398)
Q Consensus 283 s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~L 361 (398)
--+..+. .-...|-+.+.. .++.-++..+..++.....+|+..| +++.+ ++....+..++..|.. -+.++
T Consensus 205 Lp~~~~~---lG~~l~lq~i~~-~G~~GilL~~~~~~~t~~~~~~~~R-l~~~~----~g~~g~a~~ttaG~aic~pAAv 275 (326)
T PRK05274 205 IPFFAFA---LGNGIDLGTIIT-AGLSGILLGVAVVAVTGIPLYLADR-LIGGG----NGVAGAAAGSTAGNAVATPAAV 275 (326)
T ss_pred HHHHHHH---HhcceeHhHHHh-cCCcchhhhhhHhhccchhhHhHhh-eeecC----CCcchHHHHHHHHHHHHHHHHH
Confidence 2111111 111223233332 2333334444555566777888886 55443 2333444555555542 22223
Q ss_pred HHH--hCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 015905 362 ANR--FFQ--DPLVSVPPAISTVIMSLMGFFLVMLWAKK 396 (398)
Q Consensus 362 A~~--~F~--~p~valp~~iy~v~q~i~g~~la~~~~~~ 396 (398)
+.. .+. .+.+++-++.-.++..+...++..+|.||
T Consensus 276 aa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~ 314 (326)
T PRK05274 276 AAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKR 314 (326)
T ss_pred HhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222 12233333344456666777777777665
No 20
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=95.28 E-value=0.26 Score=49.00 Aligned_cols=118 Identities=12% Similarity=0.238 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905 244 KGMVSSILQIVVVPIAAGLLL-NRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL 319 (398)
Q Consensus 244 ~~i~~~Ll~~VllPl~lG~ll-r~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l 319 (398)
|.++..++ -+++-+.+|.++ ||. ++ +..+.+.+.. -.+++=..++..+.....+..+...+...........
T Consensus 4 ~~~~~~il-pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v---~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 4 YVILETVL-PILVVILLGYILGKRFGILDEEHASGINRFV---INFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544 677788899999 775 22 3334444432 2222333333333322111011111222333344456
Q ss_pred HHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHHHHHhCCC
Q 015905 320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQD 368 (398)
Q Consensus 320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~LA~~~F~~ 368 (398)
..+.++|.++|++++.++ +++.+..+.++..|.+ +|+.++...||+
T Consensus 80 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~N~~~~GlPl~~~~~G~ 126 (321)
T TIGR00946 80 GSYALIWLITKPLFKADY---GKLSGFLLVSALPNTAFIGYPLLLSLFGE 126 (321)
T ss_pred HHHHHHHHHHHHHHhccc---chhhHHHHHhhhccceeehHHHHHHHhcc
Confidence 678888888875556554 6778888888999975 899999999984
No 21
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.03 E-value=0.94 Score=42.98 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=75.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905 136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 215 (398)
Q Consensus 136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m 215 (398)
.|+.+...||++.++.++.+--++--...+.++ ..+++|+++...++-=+. +.+.+--.+...|||. +++.+.
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~-sLta~~ 139 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIP-SLTAVF 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChH-HHHHHH
Confidence 467777788889999998888777777788887 589999999866554433 4555556899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015905 216 TSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 216 t~istlla~~~~Plll~ll 234 (398)
+.++-+++..+-|.++.++
T Consensus 140 VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 140 VVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhhHHHHhHHHHHhHc
Confidence 9999999999999999886
No 22
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=94.95 E-value=3.6 Score=41.49 Aligned_cols=92 Identities=21% Similarity=0.288 Sum_probs=64.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 216 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt 216 (398)
.||.-.+.|||.+++|...|+.+.- ++..+ ..++.++..|..+-+.|-+=|.++-.+-+.++ -|. --.++..
T Consensus 83 tDFgpllanP~~~llGaaAQ~Gif~--t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~L-lgpIaVa 154 (360)
T PF03977_consen 83 TDFGPLLANPKTLLLGAAAQFGIFA--TFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PHL-LGPIAVA 154 (360)
T ss_pred HhhHHHHhCHHHHHHHHHHHHhHHH--HHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HHH-HHHHHHH
Confidence 4999999999999999999999763 34444 35688888888888888776665544445554 344 2344444
Q ss_pred HHH-HHHHHHHHHHHHHHhhC
Q 015905 217 SLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 217 ~is-tlla~~~~Plll~ll~g 236 (398)
+=| .-+.++.-|.++.++..
T Consensus 155 AYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 155 AYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHHHHHHhhhhhHHHHHhcC
Confidence 444 55677888999988864
No 23
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=94.20 E-value=5.1 Score=40.90 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=62.6
Q ss_pred HHHHHHHhchhHHHH-HHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905 137 KDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 215 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~-gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m 215 (398)
.||.-.+.|||..++ |...|+.+.=- +..+ ..++.+...|.++-+.|-+=|.++-.+-+.++. |. --+++.
T Consensus 119 tDFgpllanP~~~ll~gaaAQ~GiF~t--~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-~L-lg~IaV 190 (399)
T TIGR03136 119 SDISFILARPWASITVALFAEMGTFAT--LVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-DL-FVPISI 190 (399)
T ss_pred hcchHHHhChHHHHHHHHHHHhhHHHH--HHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-Hh-HHHHHH
Confidence 499999999999999 89999987633 3443 356777777777777887766655545555543 33 233444
Q ss_pred HHHH-HHHHHHHHHHHHHHhhC
Q 015905 216 TSLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 216 t~is-tlla~~~~Plll~ll~g 236 (398)
.+=| .-+-|+.-|.++.++..
T Consensus 191 AAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 191 IAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred HHHHHHHHHhcccchHHHhhcC
Confidence 4444 45667777888888864
No 24
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=94.05 E-value=2 Score=41.13 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=73.1
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905 136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 215 (398)
Q Consensus 136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m 215 (398)
.++.+...||++.++.+..+--++--..++.++ ..+++++++...++-=+. +++.+--.+...|||. +++.+.
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~-sLta~~ 149 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIP-AVTAVF 149 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChH-HHHHHH
Confidence 466667777888888888877676667778887 589999998855443333 4445555899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015905 216 TSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 216 t~istlla~~~~Plll~ll 234 (398)
+.++-+++..+-|.++.++
T Consensus 150 vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 150 VILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887
No 25
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=93.94 E-value=2.3 Score=40.83 Aligned_cols=92 Identities=11% Similarity=0.005 Sum_probs=75.3
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905 136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 215 (398)
Q Consensus 136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m 215 (398)
.++++...|+++.++.++++--++--..++.++ +.+++|+++...++==+. +++.+--.+...||+. +++...
T Consensus 83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~p-sLtA~~ 155 (232)
T PRK04288 83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIK-EITSFA 155 (232)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcH-HHHHHH
Confidence 366777778889999999888887778888888 689999998855543333 4445556899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015905 216 TSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 216 t~istlla~~~~Plll~ll 234 (398)
+.++-+++.++-|.++.++
T Consensus 156 ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 156 VIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887
No 26
>PRK10711 hypothetical protein; Provisional
Probab=93.91 E-value=1.8 Score=41.46 Aligned_cols=92 Identities=14% Similarity=-0.002 Sum_probs=74.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905 136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 215 (398)
Q Consensus 136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m 215 (398)
.++.+...|+++.+..++..--++--..++.++ +.+++|+++...++==+. +++.+--.++..||+. +++...
T Consensus 78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~-sLta~~ 150 (231)
T PRK10711 78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIP-AISAVC 150 (231)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcH-HHHHHH
Confidence 356666677888899998888787778888888 689999999855543333 4445555899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015905 216 TSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 216 t~istlla~~~~Plll~ll 234 (398)
+.++-+++.++-|.++.++
T Consensus 151 ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 151 VIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999887
No 27
>PRK09903 putative transporter YfdV; Provisional
Probab=93.71 E-value=1.5 Score=43.59 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 015905 251 LQIVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAIN-IESVMSPFGLTILLLIITFHLSAFVAGY 326 (398)
Q Consensus 251 l~~VllPl~lG~llr~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n-~~~i~~~~~~~i~la~~ll~l~gf~lGy 326 (398)
+.-+++=+.+|.+.||. .+ +..+.+.+..-. +++=..++..+... .+...+ .+...+...+..+..+.++|
T Consensus 9 ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~---v~lPalif~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 83 (314)
T PRK09903 9 LLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLN---YALPAALFVSITRANREMIFA--DTRLTLVSLVVIVGCFFFSW 83 (314)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhCCHHHHHh--hhhHHHHHHHHHHHHHHHHH
Confidence 34555666778888774 22 223333333222 22222222222221 111111 12233444455556667777
Q ss_pred HHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHHhCCCC
Q 015905 327 VVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP 369 (398)
Q Consensus 327 lla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~~F~~p 369 (398)
.+++++++.++ +++....+..+.-|. -+|+.+....||+.
T Consensus 84 ~~~~~~~~~~~---~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~ 124 (314)
T PRK09903 84 FGCYKFFKRTH---AEAAVCALIAGSPTIGFLGFAVLDPIYGDS 124 (314)
T ss_pred HHHHHHhcCCc---chhhHhhhhhcCCCcccccHHHHHHHcCch
Confidence 77765545443 455566666777787 59999999999843
No 28
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.56 E-value=1.2 Score=45.02 Aligned_cols=107 Identities=14% Similarity=0.282 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015905 253 IVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLIITFHLSAFVAGYV 327 (398)
Q Consensus 253 ~VllPl~lG~llr~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n~--~~i~~~~~~~i~la~~ll~l~gf~lGyl 327 (398)
-+++=+++|.+++++ ++ +..+.+.+.. -.+++=++++..++.+. +.+.+ .+.+.+...+..++++.++|+
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHHH
Confidence 566667788888876 22 2233333332 22333333333333321 11111 223444556667888888988
Q ss_pred HHHHhhcCCccccchhhheeeecccccH-HHHHHHHHHhCCC
Q 015905 328 VTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD 368 (398)
Q Consensus 328 la~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~~F~~ 368 (398)
+.| +++.++ +++......++..|. .+++.+....|++
T Consensus 83 ~~~-~~~~~~---~~~~~~~~~~~~~N~~~lglpi~~~l~g~ 120 (385)
T PF03547_consen 83 LSR-LFRLPK---EWRGVFVLAASFGNTGFLGLPILQALFGE 120 (385)
T ss_pred HHH-hcCCCc---ccceEEEecccCCcchhhHHHHHHHHhcc
Confidence 876 456554 567778888888997 4899999999974
No 29
>COG0679 Predicted permeases [General function prediction only]
Probab=93.44 E-value=1.5 Score=43.60 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHHHHHhCCCCcchhHHHHHHHHHH
Q 015905 310 ILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPLVSVPPAISTVIMS 383 (398)
Q Consensus 310 i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~LA~~~F~~p~valp~~iy~v~q~ 383 (398)
.+.+.+...+..+..+++++|+.++.+. +++.......+..|++ ++..++...||+..++.+. +|...++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~-i~~~~~~ 136 (311)
T COG0679 66 LIVASLVATLLAFFLLALIGRFLFKLDK---RETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAV-IFLIIGL 136 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHH-HHHHHHH
Confidence 3444555566666777777777655543 4556777888888875 7799999999865555444 3444333
No 30
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.37 E-value=2 Score=38.48 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=61.6
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS 212 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs 212 (398)
.+.+++++..+.+...+...+...++.=..++.+. +..+.|..-+ +.+++|||...- .++.-.|.|. ..-
T Consensus 64 f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m~~~A~~~gad~-~~V 134 (156)
T TIGR03082 64 FTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEMAALAAELGADV-AFV 134 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHHHHHHHHhCCCH-HHH
Confidence 68889988888877666555555555445555554 5677777555 588999998664 4667778888 566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 015905 213 IVMTSLSTATAVFVTPLLSL 232 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ 232 (398)
.....+=.++-.+..|++..
T Consensus 135 ~~~q~~Rl~~v~~~~P~i~~ 154 (156)
T TIGR03082 135 AAMQTLRLLFVVLLVPLLAR 154 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666676554
No 31
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.21 E-value=1.4 Score=43.99 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcCChhH----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015905 253 IVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV 328 (398)
Q Consensus 253 ~VllPl~lG~llr~~~p~~a~~l~~~l~~~s----~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGyll 328 (398)
..++.+++|++++.+..+..++.++-.+..+ .+++.+. -+-.+-.++.+ .++..++..++.....+.++|++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999733333344444333222 2332221 12223344444 46555566667778888899999
Q ss_pred HHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC
Q 015905 329 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ 367 (398)
Q Consensus 329 a~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~ 367 (398)
++++++.++ +...-++-.++..-.+..++++..-=.
T Consensus 104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 104 GRRLFGLDR---KLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHhCCCH---HHHHHHHhhcccchHHHHHHHcccccC
Confidence 955788875 566667777777777666666654433
No 32
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=89.27 E-value=19 Score=36.39 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=55.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCC------ChhHHHHHHHHhcCCchhhHHHHHHhcCCCchh
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 210 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l------~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aa 210 (398)
.||.-.+.||+.++.|...|+.+.--+ ..+ ..++. +...|..+-+.|-+=|.++-.+-+.++ -|. -
T Consensus 77 tDFgpllanP~~~llGaaAQ~GiF~t~--~~A----~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~la-p~L-l 148 (354)
T TIGR01109 77 TDFGPLLANPRTLLLGAAAQFGIFATV--FGA----LTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-L 148 (354)
T ss_pred hhhHHHHhChHHHHHHHHHHhhHHHHH--HHH----HHhCCCcccccChhhceeeeeeccCCCchhhhhHhhhh-hHH-H
Confidence 499999999999999999999876433 333 23444 445555665666655544333333443 233 2
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 015905 211 LSIVMTSLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 211 Lsl~mt~is-tlla~~~~Plll~ll~g 236 (398)
-+++..+=| .-+-|+.-|.++.++..
T Consensus 149 g~IaVAAYsYMaLvPiiqPpimklLtt 175 (354)
T TIGR01109 149 AAIAVAAYSYMALVPIIQPPIMKALTS 175 (354)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 333333333 44566677888887753
No 33
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=89.19 E-value=4.9 Score=38.44 Aligned_cols=89 Identities=22% Similarity=0.184 Sum_probs=72.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhH---HHHHHhcCCCchhhH
Q 015905 136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS---NYATFLTDPPLAPLS 212 (398)
Q Consensus 136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~S---nv~T~la~Gd~aaLs 212 (398)
.|++....|+|+.++.+.++--++-=..+++++ +++++++++. .+..|=.... --.++-.||-. +++
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~-----~Sl~PkSvTTpiAm~vs~~iGGip-~lt 149 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELI-----LSLLPKSVTTPIAMEVSESIGGIP-ALT 149 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHH-----HHhcccccccHHHHHHHHhcCCch-HHH
Confidence 467777888899999998887776667778887 6899999988 4555644444 44799999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015905 213 IVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ll 234 (398)
...+.++-+++-++-|.++..+
T Consensus 150 av~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 150 AVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887
No 34
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=88.47 E-value=26 Score=35.96 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 216 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt 216 (398)
.||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus 148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA 225 (433)
T PRK15475 148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA 225 (433)
T ss_pred hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence 49999999999999999999987644333321000001255666666666666665554444444444 333 2333443
Q ss_pred HHH-HHHHHHHHHHHHHHhhC
Q 015905 217 SLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 217 ~is-tlla~~~~Plll~ll~g 236 (398)
.=| .-+-|+.-|.++.++..
T Consensus 226 AYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15475 226 AYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred HHHHHHHHhcccchHHHhccC
Confidence 333 45667777888888753
No 35
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=88.47 E-value=8.5 Score=38.53 Aligned_cols=93 Identities=6% Similarity=0.126 Sum_probs=64.1
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS 212 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs 212 (398)
.+.+++++..|.-...+...+.-....=+.++++. ...++|... .+++++|||...- ....-.|.|. +.-
T Consensus 221 f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~-~~V 291 (318)
T PF05145_consen 221 FTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDFLT----ALLATAPGGLAEMALIALALGADV-AFV 291 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCCh-HHH
Confidence 78888887776655555555555555556666665 566777644 4689999998774 5777788888 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 015905 213 IVMTSLSTATAVFVTPLLSLLLI 235 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ll~ 235 (398)
.++-.+=-+.-.++.|++..++.
T Consensus 292 ~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 292 AAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666777777766653
No 36
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=88.45 E-value=27 Score=35.94 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 216 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt 216 (398)
.||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus 148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA 225 (433)
T PRK15477 148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA 225 (433)
T ss_pred hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence 49999999999999999999987644333321000001255666666666666665554444444444 333 2333333
Q ss_pred HHH-HHHHHHHHHHHHHHhhC
Q 015905 217 SLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 217 ~is-tlla~~~~Plll~ll~g 236 (398)
.=| .-+-|+.-|.++.++..
T Consensus 226 AYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15477 226 AYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred HHHHHHHHhcccchHHHhccC
Confidence 333 45667777888888753
No 37
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=88.43 E-value=27 Score=35.93 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 216 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt 216 (398)
.||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus 148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA 225 (433)
T PRK15476 148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA 225 (433)
T ss_pred hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence 49999999999999999999987644333321000001255666666666666665554444444444 333 2333333
Q ss_pred HHH-HHHHHHHHHHHHHHhhC
Q 015905 217 SLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 217 ~is-tlla~~~~Plll~ll~g 236 (398)
.=| .-+-|+.-|.++.++..
T Consensus 226 AYSYMaLVPiIQPpimklLTT 246 (433)
T PRK15476 226 AYSYMALVPLIQPPIMKALTT 246 (433)
T ss_pred HHHHHHHHhcccchHHHhccC
Confidence 333 45667777888888753
No 38
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=85.15 E-value=16 Score=33.38 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHh
Q 015905 306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRF 365 (398)
Q Consensus 306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~ 365 (398)
.++...+..++.+..+..+++.++|++++.++ ..+...-+|.++..-++.-|...
T Consensus 82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 82 GGLKLLLLGVIITLVPLLIALVIGRYLFKLNP-----GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHccccCcHHHHHHHHh
Confidence 36777788888899999999999986777653 34445556666655555555554
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=83.97 E-value=52 Score=33.36 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH----HHHhcCCCch
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLA 209 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv----~T~la~Gd~a 209 (398)
++..|+.+.=-+--.+.. ......=++++.++ +.+++|...+ -++-+|++=||.++.. .+.--+-|+
T Consensus 83 ltl~~i~~~G~~~v~~~~---~~l~~t~~~~~~lg----~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev- 153 (334)
T COG2855 83 LTLSDIADVGGSGVLIIA---ITLSSTFLFAYFLG----KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV- 153 (334)
T ss_pred eeHHHHHHcCccHHHHHH---HHHHHHHHHHHHHH----HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-
Confidence 788888776544332222 22222335567777 5889999877 5666777777765543 233345566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll 234 (398)
+.++..+.+-..++.+..|.+-.++
T Consensus 154 a~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 154 AVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHh
Confidence 7899999998999999999988875
No 40
>PRK05326 potassium/proton antiporter; Reviewed
Probab=82.44 E-value=76 Score=34.16 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 015905 217 SLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI 275 (398)
Q Consensus 217 ~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l 275 (398)
.++..++.+++=+.+.+..+..-+.+. ..+..++..+.+-+++|....+......++.
T Consensus 159 ~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~ 216 (562)
T PRK05326 159 GSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI 216 (562)
T ss_pred hcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556655554444444333322222 2233444555666666666666655555544
No 41
>PRK04972 putative transporter; Provisional
Probab=81.91 E-value=7.9 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.324 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCC--CcchhHH--HHHHHH
Q 015905 306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD--PLVSVPP--AISTVI 381 (398)
Q Consensus 306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~--p~valp~--~iy~v~ 381 (398)
.++.+.++.++..++.-.++++++|++++.++ . +++..-+|.+...-++.-+...-++ |.+.-+. .+..++
T Consensus 471 ~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~----~-~~~G~~aG~~t~~~~l~~~~~~~~~~~~~~gYa~~yp~~~il 545 (558)
T PRK04972 471 VGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR----A-LLFGAIMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVL 545 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----H-HHHHHHhCCCCCcHHHHHHHhhcCCCCcccccHhHHHHHHHH
Confidence 36666666667777777788888877888764 3 4455555555555444444443343 4332222 233345
Q ss_pred HHHHHHHHHHHH
Q 015905 382 MSLMGFFLVMLW 393 (398)
Q Consensus 382 q~i~g~~la~~~ 393 (398)
..+.+.+++.+|
T Consensus 546 ~~l~~~~iv~~~ 557 (558)
T PRK04972 546 LTLAGTLIVIVW 557 (558)
T ss_pred HHHHHHHHHHhc
Confidence 555666555443
No 42
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=79.42 E-value=60 Score=31.10 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=66.3
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHH--HHHHHhhhhhccCCC--hhHHHHHHHHhcCCchhhHHHHHHh--cCC
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSNYATFL--TDP 206 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPll--a~~l~~~~~~~~~l~--~~la~GliL~~~~Pgg~~Snv~T~l--a~G 206 (398)
.+|.+++++..|+...+. ... ++.|.. ++..+ ..++.+ .....|.++...+|+... .++..+ .+.
T Consensus 61 ~~d~~~l~~~~~~~~~~~---~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~lg~~ls~Ts~~v~~-~il~~~~~~~~ 131 (273)
T TIGR00932 61 ELDLERLWKLRKAAFGVG---VLQ-VLVPGVLLGLLLG----HLLGLALGAAVVIGIILALSSTAVVV-QVLKERGLLKT 131 (273)
T ss_pred CCCHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHhHHHHHH-HHHHHcCcccC
Confidence 578888888766533322 222 223422 22233 234443 445555555544433322 233322 344
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 015905 207 PLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI 275 (398)
Q Consensus 207 d~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l 275 (398)
+...+.++...++.+++.+..-+......+.. .+...+...+...+..-++.+.+.|+..+...++.
T Consensus 132 ~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T TIGR00932 132 PFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLT 198 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54456677777888988888777665543322 22223333333334445556666666555444433
No 43
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=78.69 E-value=59 Score=30.60 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCCh
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 281 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll~g--------~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~ 281 (398)
..+++.|.+-++.+++.-++.-+++.. .++++++..+..-++.+=.+=..+-+++|++.|+..+.+..+++.
T Consensus 40 gmGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpL 119 (202)
T PRK02830 40 GLGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPL 119 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 466666666677666666665544422 124444444444444444445567888999999999999999988
Q ss_pred hHHHHHHH
Q 015905 282 LSVLVTAC 289 (398)
Q Consensus 282 ~s~l~lll 289 (398)
+..=|.++
T Consensus 120 I~~NCaVL 127 (202)
T PRK02830 120 ITVNCAIF 127 (202)
T ss_pred HHHHHHHH
Confidence 76544443
No 44
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=76.26 E-value=78 Score=30.69 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHhcCCchhhHH-HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-------C---CccccChHHHHHHHHHHHH
Q 015905 187 LVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-------G---KRLPVDVKGMVSSILQIVV 255 (398)
Q Consensus 187 L~~~~Pgg~~Sn-v~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~-------g---~~v~vd~~~i~~~Ll~~Vl 255 (398)
.+|.||--..|+ +-+.+ .+.++.+.+-++.+++.-++.-+++. + +.++.++..+..-++.+-.
T Consensus 29 ~LG~Cp~LaVS~~~~~a~------gMGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~ 102 (244)
T PRK01061 29 FLGMCSYLACSSRLSTAN------GLGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAA 102 (244)
T ss_pred HHhcCcchhccCccHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHH
Confidence 456676544332 12221 35566666666666666655433321 1 1234454444444444444
Q ss_pred HHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHH
Q 015905 256 VPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTA 288 (398)
Q Consensus 256 lPl~lG~llr~~~p~~a~~l~~~l~~~s~l~ll 288 (398)
+=.++-+++|++.|+..+.+..+++.+..=|.+
T Consensus 103 ~Vq~vem~L~a~~p~Ly~aLGifLPLIttNCaV 135 (244)
T PRK01061 103 FTQILELLLEKVSRNLYLSLGIFLPLIAVNCAI 135 (244)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHH
Confidence 455678889999999999999999887654433
No 45
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=75.14 E-value=44 Score=34.67 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccchhhh--eeeecccccHHHHHH----HHHHhCCCCc--chhHHHHHHHHHHH
Q 015905 313 LIITFHLSAFVAGYVVTGLAFAEAHDVKALQRT--LSYETGMQSSLLALA----LANRFFQDPL--VSVPPAISTVIMSL 384 (398)
Q Consensus 313 a~~ll~l~gf~lGylla~~l~~~~~~~~~~~~t--l~~~tG~rN~~Lal~----LA~~~F~~p~--valp~~iy~v~q~i 384 (398)
..+.-.+..+...+++.+|.+++++ +..+- --...|+-.++-|++ +...|-+.|. ..+| .+...+--+
T Consensus 309 il~~q~i~~~l~~~fv~fr~mg~~y---daaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivP-lvgaf~id~ 384 (398)
T TIGR00210 309 ILLVQVMFMALYAIFVTFRLMGKDY---DAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVP-LVGAFFIDI 384 (398)
T ss_pred HHHHHHHHHHHHHHHHhHHhccchH---HHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhh-hHHHHHHHH
Confidence 3344445555566677777787776 33331 122223333333333 2333444554 3455 467788888
Q ss_pred HHHHHHHHHh
Q 015905 385 MGFFLVMLWA 394 (398)
Q Consensus 385 ~g~~la~~~~ 394 (398)
.++.+...+-
T Consensus 385 ~n~~~i~~f~ 394 (398)
T TIGR00210 385 INALVIKQFL 394 (398)
T ss_pred hhHHHHHHHH
Confidence 8877766543
No 46
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=74.75 E-value=30 Score=35.06 Aligned_cols=104 Identities=8% Similarity=0.037 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHh-HHHHHHhcCcCChhH----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015905 255 VVPIAAGLLLNRFF-PRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 329 (398)
Q Consensus 255 llPl~lG~llr~~~-p~~a~~l~~~l~~~s----~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla 329 (398)
++-+++|++++... ++..++.++-....+ .+++.+ .-+-.+-+++.+ .|+..++..+......+.++|+++
T Consensus 35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL---lG~~l~~~~i~~-~G~~~l~~~~~~v~~~~~~~~~~g 110 (335)
T TIGR00698 35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL---YGFRLTFPYIAD-VGPNEIVADTLILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH---HCccccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899888743 333334443322222 222222 111233344544 465555555566677788889998
Q ss_pred HHhhcCCccccchhhheeeecccccHHHHHHHHHHh
Q 015905 330 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRF 365 (398)
Q Consensus 330 ~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~ 365 (398)
+|+++.++ +.+.-++-.++..=.+..++.+..-
T Consensus 111 ~k~l~l~~---~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 111 SSRLKLDK---QMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred HHHhCCCh---hHHHHHHcchhHHHHHHHHHhcccc
Confidence 65678875 5666666666666666655555443
No 47
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=73.58 E-value=81 Score=29.63 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHH
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVL 285 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll~----g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l 285 (398)
..+++.|.+-++.++..-++.-+++. .+.+++++..+..-++.+=.+=.++-+++|++.|+..+.+..+++.+..=
T Consensus 41 gmGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~tN 120 (199)
T PRK12456 41 GLGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTIH 120 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 35666666666666666555544432 22344444444444433333445677889999999999999998886654
Q ss_pred HHHH
Q 015905 286 VTAC 289 (398)
Q Consensus 286 ~lll 289 (398)
|.++
T Consensus 121 CaVL 124 (199)
T PRK12456 121 CAIF 124 (199)
T ss_pred HHHH
Confidence 4433
No 48
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=73.19 E-value=90 Score=29.98 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCCCc-
Q 015905 292 GAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL- 370 (398)
Q Consensus 292 ~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~- 370 (398)
...++.|++.+.++ ++.+...+++=.+.+...+++++| +++.++ +-.+++.= =.-.+.+|+.++...-+.|+
T Consensus 76 AvPLYkq~~~ik~~-w~~I~~g~~vGs~~ai~s~~llak-~~g~~~---~~~~Sl~P--kSvTTpiAm~vs~~iGGip~l 148 (230)
T COG1346 76 AVPLYKQRHLIKRH-WKPILAGVLVGSVVAIISGVLLAK-LFGLSP---ELILSLLP--KSVTTPIAMEVSESIGGIPAL 148 (230)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH---HHHHHhcc--cccccHHHHHHHHhcCCchHH
Confidence 34667887777664 444555566667888899999997 578765 23333322 12234566667766666665
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 015905 371 VSVPPAISTVIMSLMGFFLVMLWA 394 (398)
Q Consensus 371 valp~~iy~v~q~i~g~~la~~~~ 394 (398)
.++-+++-+++-+++|..+....+
T Consensus 149 tav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 149 TAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566666667766655554
No 49
>PRK10711 hypothetical protein; Provisional
Probab=73.14 E-value=70 Score=30.76 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=54.8
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH--HHHHHHHHHhCCCCc
Q 015905 293 APLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL 370 (398)
Q Consensus 293 ~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~--~Lal~LA~~~F~~p~ 370 (398)
..++.|++.+.++ ...+.+.+.+=.+.+...++++++ +++.++ +-.. ++ .-|+. .+|+.++...-++|.
T Consensus 75 vPLY~q~~~lk~~-~~~I~~~~~vG~~v~i~s~~~l~~-~lg~~~---~~~~--Sl--~pkSVTtPIAm~is~~iGG~~s 145 (231)
T PRK10711 75 FPLYEQLHQIRAR-WKSIISICFIGSVVAMVTGTAVAL-WMGATP---EIAA--SI--LPKSVTTPIAMAVGGSIGGIPA 145 (231)
T ss_pred HHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHCcCH---HHHH--HH--hhhhhhHHHHHHHHHHhCCcHH
Confidence 3567777766664 334555566667788888899987 567654 2222 22 22554 566666666666553
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHh
Q 015905 371 -VSVPPAISTVIMSLMGFFLVMLWA 394 (398)
Q Consensus 371 -valp~~iy~v~q~i~g~~la~~~~ 394 (398)
.++-+++-+++-.++|..+..+.|
T Consensus 146 Lta~~ViitGi~Ga~~g~~llk~~r 170 (231)
T PRK10711 146 ISAVCVIFVGILGAVFGHTLLNAMR 170 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444455566666666665544444
No 50
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=71.43 E-value=85 Score=30.08 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=51.2
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH--HHHHHHHHHhCCCCc-
Q 015905 294 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL- 370 (398)
Q Consensus 294 ~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~--~Lal~LA~~~F~~p~- 370 (398)
.++.|++.+.++ ...+...+.+=.+.+...++++++ +++.++ ....+ ..-|+. .+|+.++...-++|.
T Consensus 75 PLY~~~~~lk~~-~~~Il~~~~~G~~~~~~s~~~la~-~lg~~~-----~i~~S--l~pkSvTtpiAm~vs~~iGG~~sL 145 (226)
T TIGR00659 75 PLYKQLPQIKKY-WKEIILNVAVGSVIAIISGTLLAL-LLGLGP-----EIIAS--LLPKSVTTPIAMHVSEMIGGIPAV 145 (226)
T ss_pred HHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHCcCH-----HHHHH--hhhHHhhHHHHHHHHHHhCChHHH
Confidence 556676666654 233445555555677788888887 567653 22333 333555 456666666666654
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 015905 371 VSVPPAISTVIMSLMGFFLVMLWA 394 (398)
Q Consensus 371 valp~~iy~v~q~i~g~~la~~~~ 394 (398)
.++-+++-+++-.++|..+..+++
T Consensus 146 ta~~vvitGi~Ga~~g~~ll~~~~ 169 (226)
T TIGR00659 146 TAVFVILTGLLGTVFGPMVLRYFR 169 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555555555555444443
No 51
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=71.25 E-value=32 Score=34.26 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=57.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT 216 (398)
Q Consensus 137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt 216 (398)
.||...+.+||-++.|-..|+.+.-.+-.. ..++..+..|..+-+.|-+-|.++-.+-+.++. |. --+++..
T Consensus 98 TDFgpllanPktllLGaAAQ~GIF~t~~~A------~~lgf~~~eAasIgIIGGADGPTaIy~t~~LAP-~L-l~~iAvA 169 (375)
T COG1883 98 TDFGPLLANPKTLLLGAAAQFGIFATVFGA------LALGFTPKEAASIGIIGGADGPTAIYLTNKLAP-EL-LGAIAVA 169 (375)
T ss_pred cccchhhcCcHHHHhhhHHHhchHHHHHHH------HHhCCCHhhhhheeeeccCCCCceEEeccccCH-HH-HHHHHHH
Confidence 488899999999999999999976433332 356666666667666666655544333344432 33 1222222
Q ss_pred HHH-HHHHHHHHHHHHHHhhC
Q 015905 217 SLS-TATAVFVTPLLSLLLIG 236 (398)
Q Consensus 217 ~is-tlla~~~~Plll~ll~g 236 (398)
.-| ..+-|+.=|..+..+..
T Consensus 170 AYSYMALVPiIQPpimkaLTt 190 (375)
T COG1883 170 AYSYMALVPIIQPPIMKALTT 190 (375)
T ss_pred HHHHHHHhhhcccHHHHHhcC
Confidence 333 44556677888888753
No 52
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=70.45 E-value=96 Score=29.17 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCCh
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 281 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll~g--------~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~ 281 (398)
.++++.|.+-++.+++.-++.=++... +++++.+..+..-++.+=.+=..+-+++|++.|+..+.+..+++.
T Consensus 39 gmGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~vem~l~a~~p~ly~~LGiflpL 118 (200)
T TIGR01940 39 GLGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQILEMVLERFSPSLYNALGIFLPL 118 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Confidence 355566666666666665555443321 123344434433333333344457788999999999999999888
Q ss_pred hHHHHHHH
Q 015905 282 LSVLVTAC 289 (398)
Q Consensus 282 ~s~l~lll 289 (398)
+..=|.++
T Consensus 119 I~tNCaVL 126 (200)
T TIGR01940 119 ITVNCAIF 126 (200)
T ss_pred HHHHHHHH
Confidence 76544443
No 53
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=69.74 E-value=97 Score=28.90 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=52.5
Q ss_pred HHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Q 015905 187 LVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNR 266 (398)
Q Consensus 187 L~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~ 266 (398)
.+|.||--..|+-. +.-. .++++.+.+-++.++..-++.=++. +..++++..+..-++.+-.+=..+-+++|+
T Consensus 21 ~LG~Cp~l~vs~~~----~~a~-gmGlav~~V~~~s~~~~~~i~~~il--~p~~l~~lr~~~filvIA~~V~~ve~~l~~ 93 (190)
T TIGR01943 21 FLGLCPFLGVSKKL----ETAI-GMGLAVTFVMTLASVISWLVYNFIL--DPLNLEFLRTIVFILVIAALVQFVEMVVRK 93 (190)
T ss_pred HHhcCchhhhccch----HHHH-HHHHHHHHHHHHHHHHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677764444211 1111 3555555555555555544433222 223344444443333333444557788999
Q ss_pred HhHHHHHHhcCcCChhHHHHHHH
Q 015905 267 FFPRICNAIRPFLPPLSVLVTAC 289 (398)
Q Consensus 267 ~~p~~a~~l~~~l~~~s~l~lll 289 (398)
+.|+..+.+..+++.+..=|.++
T Consensus 94 ~~p~ly~~LGiflpLI~tNCaVL 116 (190)
T TIGR01943 94 TSPDLYRALGIFLPLITTNCAVL 116 (190)
T ss_pred hChHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999998876544443
No 54
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=68.23 E-value=1.3e+02 Score=29.94 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=59.3
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH----HHHhcCCCc
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPL 208 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv----~T~la~Gd~ 208 (398)
++++.|+.+.-.+. +....+ .....=.+++.++. +.+++|++.+ -++-+|.+=||.++.. ..+--+-|+
T Consensus 72 ~l~~~~i~~~G~~~--~~~~~~-~v~~~~~~~~~lg~---r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~ 144 (305)
T PF03601_consen 72 RLSFSDILALGWKG--LLIIII-VVILTFLLTYWLGR---RLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDV 144 (305)
T ss_pred cccHHHHHHhCccH--HHHHHH-HHHHHHHHHHHHHH---HHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCce
Confidence 46777777654433 222222 22223334455552 5789998765 4555565556654432 223346677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 209 APLSIVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 209 aaLsl~mt~istlla~~~~Plll~ll 234 (398)
+++++++.+-..++++..|.+-..+
T Consensus 145 -a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 145 -AYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred -eeeehHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999998875
No 55
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=67.52 E-value=54 Score=35.51 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHH
Q 015905 306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 364 (398)
Q Consensus 306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~ 364 (398)
.++...+..++..+....+++++++++++.++ . .+++.-+|.+...-++.-+..
T Consensus 476 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~-~~~G~~aG~~t~t~~l~~a~~ 529 (562)
T TIGR03802 476 MGLTLFLLGIVVTILPLIITMLIGKYVLKYDP----A-LLLGALAGARTATPALGAVLE 529 (562)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----H-HHHHHhhccCCCcHHHHHHHH
Confidence 46666677778888888888888877778764 3 444545555554444444443
No 56
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=65.67 E-value=1.7e+02 Score=30.14 Aligned_cols=155 Identities=15% Similarity=0.238 Sum_probs=89.0
Q ss_pred HHhHHHHHHHHHHHHHhh---cCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhh---hccCCChh
Q 015905 107 SNSFLPHVVLGSTMLALV---FPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTP 180 (398)
Q Consensus 107 ~~~~l~~~il~~~~lg~~---~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~---~~~~l~~~ 180 (398)
+|+....++..+.++|.. +.+.+..+ -++|.+-+..=..+.++..--+.+.|.++..+...+. ..++.||.
T Consensus 3 in~iiiyIm~~f~viGaiD~iign~~~Gl---G~~FeeGi~aMG~lalsm~GI~~laP~ls~~l~~ii~Pi~~~lgaDps 79 (372)
T PRK15086 3 INEIIIYIMMFFMLIGAIDRIIGNKFEGL---GEQFEEGIMAMGPLALAMVGIMALAPVLAHVLGPVIIPIYEALGADPS 79 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHH
Confidence 456666677777777754 22211111 2566677766677788888888899999998886543 35677887
Q ss_pred HHHHHHHHhcCCchhhHHHHHH------------------------------hcCCCchhhHHHHHHHHHHHHHHHHHHH
Q 015905 181 IGAGIMLVSCVSGAQLSNYATF------------------------------LTDPPLAPLSIVMTSLSTATAVFVTPLL 230 (398)
Q Consensus 181 la~GliL~~~~Pgg~~Snv~T~------------------------------la~Gd~aaLsl~mt~istlla~~~~Pll 230 (398)
...+-++-.=.-|-..+.-++. +-|-|. -......+.+.+++|.-
T Consensus 80 mfa~siLA~DMGGY~LA~~la~~~~~~~fsG~ilgsmlG~TIvFtIPVaLgii~k~D~-----~yla~Gil~GiitIPiG 154 (372)
T PRK15086 80 MFATTLLAVDMGGYQLAKELAGDPEAWLFSGLILGSMMGATIVFTIPVALGIIEKEDR-----KYLALGVLAGIITIPIG 154 (372)
T ss_pred HHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHHHHHhccceEEeeHHhhHhhcchhhH-----HHHHHHHHHHhHhhcHH
Confidence 7766555332222222222211 111111 01122233344444443
Q ss_pred HHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015905 231 SLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 270 (398)
Q Consensus 231 l~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~ 270 (398)
... .|-...+|+..+++.++-++++-++++..++++-.+
T Consensus 155 ~~v-ggl~~g~~~~~il~NL~Piii~~illa~GL~~~p~~ 193 (372)
T PRK15086 155 CLI-GGLVAGFDFALILRNLIPVIIFAILLALGLKFIPEK 193 (372)
T ss_pred HHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 221 122247888888999998888888888888876443
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=65.13 E-value=1.1e+02 Score=31.23 Aligned_cols=92 Identities=11% Similarity=0.110 Sum_probs=62.5
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhH
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLS 212 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv-~T~la~Gd~aaLs 212 (398)
.+-..+++..|--...++..+....+.=.+++++. ...++|...+ +++.+|||...-. .+...+-|. ++-
T Consensus 254 f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~----~~~~i~~~ta----~La~sPGGl~~ma~~A~~l~ad~-a~V 324 (352)
T COG3180 254 FDRSILREAKRLLPAILVSIIALMAIAAGMAGLLS----WLTGIDLNTA----YLATSPGGLDTMAAIAAALGADP-AFV 324 (352)
T ss_pred ccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----HhcCCCHHHH----HHHcCCCcHHHHHHHHHHcCCCh-HHH
Confidence 56666666655545555555556666666677776 4667776544 6899999998765 555555688 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015905 213 IVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 213 l~mt~istlla~~~~Plll~ll 234 (398)
.++..+=-++-.+..|.+..++
T Consensus 325 ~a~q~lRll~il~i~p~l~r~l 346 (352)
T COG3180 325 MALQVLRLLFILLLGPALARFL 346 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777666777776655
No 58
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=63.12 E-value=1.3e+02 Score=28.08 Aligned_cols=96 Identities=17% Similarity=0.185 Sum_probs=54.5
Q ss_pred HHHhcCCchhhHH-HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHH
Q 015905 186 MLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLL 264 (398)
Q Consensus 186 iL~~~~Pgg~~Sn-v~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~ll 264 (398)
-.+|.||--..|+ +-+.+ .++++.+.+-++.++..-++.=++.. ..+.++..+..-++.+-.+=..+-+++
T Consensus 21 ~~LG~Cp~laVs~~~~~a~------gmGlav~fV~~~s~~~~~~i~~~il~--p~~l~~lr~~~fIlvIA~~V~~ve~~l 92 (193)
T PRK05151 21 KFLGLCPFMGVSKKLETAI------GMGLATTFVLTLASICAWLVNTYILI--PLDLIYLRTLAFILVIAVVVQFTEMVV 92 (193)
T ss_pred HHHhcCchhhhccchHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777544442 22221 35666666666666666555544331 123334343333333333444567789
Q ss_pred HHHhHHHHHHhcCcCChhHHHHHHH
Q 015905 265 NRFFPRICNAIRPFLPPLSVLVTAC 289 (398)
Q Consensus 265 r~~~p~~a~~l~~~l~~~s~l~lll 289 (398)
|++.|+..+.+..+++.+..=|.++
T Consensus 93 ~~~~p~Ly~~LGiflpLI~tNCaVL 117 (193)
T PRK05151 93 RKTSPTLYRLLGIFLPLITTNCAVL 117 (193)
T ss_pred HHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999999999988876544443
No 59
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=61.50 E-value=2e+02 Score=29.62 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=63.4
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHH-HHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHH--hcCCCch
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF--LTDPPLA 209 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimP-lla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~--la~Gd~a 209 (398)
..|.+++++..|+- . .+...--+..| .++...... ...++.++.+..|..+... ..+..+.++.. ..+.+..
T Consensus 76 E~~~~~l~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~s-S~~i~~~iL~e~~~~~~~~g 150 (397)
T COG0475 76 EFDLERLKKVGRSV-G--LGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALS-STAIVLKILMELGLLKTREG 150 (397)
T ss_pred CcCHHHHHHhchhh-h--hhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHH
Confidence 57888998887774 2 22222223444 333222210 0234445566666555433 33444455544 3333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC-hHHHHHHHHHHHHHHHHHH
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAG 261 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll~g~~v~vd-~~~i~~~Ll~~VllPl~lG 261 (398)
...+....+..+++..+..+...+..+...+.+ ...+...+.....+=+.+|
T Consensus 151 ~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 151 QLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG 203 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 466777777788888877777666544444444 3444444444444444444
No 60
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=60.90 E-value=1.3e+02 Score=28.54 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=50.0
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH--HHHHHHHHHhCCCCcc
Q 015905 294 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPLV 371 (398)
Q Consensus 294 ~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~--~Lal~LA~~~F~~p~v 371 (398)
.++.|++.+.++ ...++..+.+=.+.+...++++++ +++.++ + +..++ .-|+. .+|+.++...-++|..
T Consensus 65 PLY~~~~~l~~~-~~~il~~~~~g~~~~~~~~~~l~~-~lgl~~---~--~~~Sl--~pkSVTtpiAi~is~~iGG~~sL 135 (215)
T PF04172_consen 65 PLYRQRRLLKKN-WIPILVGVLVGSLVSIFSAVLLAR-LLGLSP---E--IILSL--APKSVTTPIAIEISEQIGGIPSL 135 (215)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHCcCH---H--HHHHH--HHHHhhHHHHHHHHHHhCChHHH
Confidence 456666666554 223444444555667777778886 467653 2 22232 33555 4556666666666643
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHh
Q 015905 372 -SVPPAISTVIMSLMGFFLVMLWA 394 (398)
Q Consensus 372 -alp~~iy~v~q~i~g~~la~~~~ 394 (398)
+.-+++-+++-.++|..+..++|
T Consensus 136 ta~~VvitGi~Ga~~g~~llk~~~ 159 (215)
T PF04172_consen 136 TAVFVVITGILGAVLGPPLLKLLR 159 (215)
T ss_pred HHHHHHHHhhHHHHhHHHHHhHcc
Confidence 33344455555556655544443
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=60.22 E-value=3.1e+02 Score=31.31 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=9.9
Q ss_pred ccCHHHHHHHHhchhH
Q 015905 133 TASEKDFIEAFKRPAA 148 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~ 148 (398)
+++.+.+++..+.+..
T Consensus 89 ~L~~~~Lrr~wrsV~r 104 (810)
T TIGR00844 89 ELPRKYMLKHWVSVTM 104 (810)
T ss_pred hCCHHHHHHhHHHHHH
Confidence 3677777666665443
No 62
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=58.15 E-value=1.5e+02 Score=31.48 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=24.1
Q ss_pred HhHHH-HHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905 157 FVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194 (398)
Q Consensus 157 fvimP-lla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg 194 (398)
|-.+| +++|-.+ +-|+.+|.+++.+-.+-+.|.=
T Consensus 158 FyFLPi~v~~saa----k~f~~np~lg~~ig~~L~~P~~ 192 (472)
T PRK09796 158 FFFLPLMVAASAA----IKFKTNMSLAIAIAGVLVHPSF 192 (472)
T ss_pred HHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHCcch
Confidence 55667 4566666 6889999888777777777743
No 63
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=57.36 E-value=1.9e+02 Score=27.92 Aligned_cols=93 Identities=17% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH--HHHHHHHHHhCCCCc
Q 015905 293 APLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL 370 (398)
Q Consensus 293 ~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~--~Lal~LA~~~F~~p~ 370 (398)
..++.|.+.+.++ .+.+...+++=...+...++++++ +++.++ ....+ ..-|+. .+|+.++...-++|.
T Consensus 80 vPLY~q~~~lk~~-~~~Il~~~~vG~~~~i~s~~~la~-~lgl~~-----~~~~S--l~pKSVTtPIAm~is~~iGG~ps 150 (232)
T PRK04288 80 IPLYKKRDVLKKY-WWQILGGIVVGSVCSVLIIYLVAK-LIQLDN-----AVMAS--MLPQAATTAIALPVSAGIGGIKE 150 (232)
T ss_pred HHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHCcCH-----HHHHH--HhhHhhhHHHHHHHHHHhCCcHH
Confidence 3567777666654 344555566666778888888887 567653 22222 233554 566666666666654
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHh
Q 015905 371 -VSVPPAISTVIMSLMGFFLVMLWA 394 (398)
Q Consensus 371 -valp~~iy~v~q~i~g~~la~~~~ 394 (398)
.++-+++-+++-.++|..+..+.|
T Consensus 151 LtA~~ViitGi~Gai~g~~llk~~~ 175 (232)
T PRK04288 151 ITSFAVIFNAVIIYALGAKFLKLFR 175 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445555555555555544443
No 64
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=56.92 E-value=97 Score=28.77 Aligned_cols=133 Identities=19% Similarity=0.321 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 255 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVM--SPFGLTILLLIITFHLSAFVAGYVVTGLA 332 (398)
Q Consensus 255 llPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~--~~~~~~i~la~~ll~l~gf~lGylla~~l 332 (398)
+..+++|+++-++.+...+.. ..........+++.++.-+..|.+.+. ...+++.++..+.-.+.....|+..+. +
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~-l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL-L 79 (191)
T ss_pred eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345677888777654321111 111123334445555545555533222 123555555444444555566666664 4
Q ss_pred hcCCccccchhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 015905 333 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK 395 (398)
Q Consensus 333 ~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~valp~~iy~v~q~i~g~~la~~~~~ 395 (398)
++.+ -+.+++...|+-=-++.-.+-.... +|+...-..+..++-=++.-+.+.+..|
T Consensus 80 l~~~-----~~~~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 80 LGLS-----LKESLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred hcCC-----HHHHHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 3445566667666677777766666 4766655555555555555555555544
No 65
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=56.48 E-value=1.5e+02 Score=32.74 Aligned_cols=33 Identities=30% Similarity=0.250 Sum_probs=22.4
Q ss_pred HhHHH-HHHHHHHhhhhhccCCChhHHHHHHHHhcCCc
Q 015905 157 FVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSG 193 (398)
Q Consensus 157 fvimP-lla~~l~~~~~~~~~l~~~la~GliL~~~~Pg 193 (398)
|-.+| +++|-.+ +-|+-+|.+++.+-.+-+.|.
T Consensus 154 FyFLPi~ia~saA----kkf~~np~lg~~ig~~L~~P~ 187 (627)
T PRK09824 154 FFFFPIILGYTAG----KKFGGNPFTAMVIGGALVHPL 187 (627)
T ss_pred HHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHChh
Confidence 55667 4567666 688999977766666666663
No 66
>COG2855 Predicted membrane protein [Function unknown]
Probab=55.08 E-value=1.2e+02 Score=30.73 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHH-HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015905 255 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 333 (398)
Q Consensus 255 llPl~lG~llr~~~p~~a~~l~~~l~~~s~l~l-lliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~ 333 (398)
++-+++|++++.+ ++..++..+-....++..+ +-++..-+-.|.+++.+ .|...+..........+.++|+++| ++
T Consensus 41 ~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G~~~v~~~~~~l~~t~~~~~~lg~-~l 117 (334)
T COG2855 41 TLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VGGSGVLIIAITLSSTFLFAYFLGK-LL 117 (334)
T ss_pred HHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 3445578888833 3333334333333332211 11111122344455554 4555566666667788999999998 67
Q ss_pred cCCc
Q 015905 334 AEAH 337 (398)
Q Consensus 334 ~~~~ 337 (398)
+.|+
T Consensus 118 gld~ 121 (334)
T COG2855 118 GLDK 121 (334)
T ss_pred CCCH
Confidence 8764
No 67
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=55.01 E-value=2.1e+02 Score=31.43 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=47.1
Q ss_pred HhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChh--HHHHHHHHhcCCchhhHHHHHHhcC--CCch-hhHHHHHH
Q 015905 143 FKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTP--IGAGIMLVSCVSGAQLSNYATFLTD--PPLA-PLSIVMTS 217 (398)
Q Consensus 143 l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~--la~GliL~~~~Pgg~~Snv~T~la~--Gd~a-aLsl~mt~ 217 (398)
..+|..++...+.-++..++..++.+ ..++.+.. ..+|+ ..+++|..+-+....+. |-.. .....++
T Consensus 291 ~~~~~~il~~~~~~~~~K~~~~~~~~----~~~g~~~~~a~~~gl---~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv- 362 (621)
T PRK03562 291 LENPLRILILLLGFLAIKIAMLWLLA----RPLGVPRKQRRWFAV---LLGQGGEFAFVVFGAAQMANVLEPEWAKLLT- 362 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHhHHHHHHH---HHhccccHHHHHHHHHHHCCCCCHHHHHHHH-
Confidence 34566655555566788888888887 46676544 44454 44567776655433321 2110 2222222
Q ss_pred HHHHHHHHHHHHHHHHh
Q 015905 218 LSTATAVFVTPLLSLLL 234 (398)
Q Consensus 218 istlla~~~~Plll~ll 234 (398)
+..+++.+++|++..++
T Consensus 363 ~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 363 LAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35567777778776553
No 68
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=54.12 E-value=3.8e+02 Score=30.57 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=20.0
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 015905 204 TDPPLAPLSIVMTSLSTATAVFVTPLLSLL 233 (398)
Q Consensus 204 a~Gd~aaLsl~mt~istlla~~~~Plll~l 233 (398)
.+-+...++++..+++.+++.+++-+...+
T Consensus 195 l~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 195 INTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554567778888888887776555444
No 69
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=51.31 E-value=2.1e+02 Score=26.61 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHH
Q 015905 211 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 289 (398)
Q Consensus 211 Lsl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~lll 289 (398)
++++.+.+.++.+++.-++-=+++.. .+...+...++.+-.+=..+-+++|++.|++.+.+..+++.+..=|+++
T Consensus 41 mGlav~~V~~~s~~~~~~l~~~il~p----~~~lr~~~~ilviA~~v~~v~~~l~~~~p~l~~~LgiylpLi~~Nc~VL 115 (190)
T PF02508_consen 41 MGLAVTFVLTLSSVLISLLRNFILAP----PSYLRIIVFILVIASLVQLVEMVLRAYFPSLYKALGIYLPLITVNCAVL 115 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHhhhHHHHHHHHH
Confidence 44445555555555544444333221 2222333333323333345778899999999888988888766544433
No 70
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=49.22 E-value=68 Score=32.21 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcCChh-----HHHHHHHHHHHHHHhhhhhhhhh--hhHHHHHHHHHHHHHHHHHH
Q 015905 253 IVVVPIAAGLLLNRFFPRICNAIRPFLPPL-----SVLVTACCVGAPLAINIESVMSP--FGLTILLLIITFHLSAFVAG 325 (398)
Q Consensus 253 ~VllPl~lG~llr~~~p~~a~~l~~~l~~~-----s~l~llliv~~~~~~n~~~i~~~--~~~~i~la~~ll~l~gf~lG 325 (398)
++++|+++|.++|.++|+.-+.+..+...+ ..+++++++ ...+- ++-+. ....-....+.=.+++..+|
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~---~Ga~I-~~k~~~~~lkkg~~ll~~K~~~~~~lg 89 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFC---MGAQI-DLKSAGKVLKKGGVLLLVKFIIGALLG 89 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHH---hcccc-chhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 578999999999999998755333322111 111222111 11110 11110 00111122233346677778
Q ss_pred HHHHHHhhcCCcc-----ccchhhheeeecccccHHHHHHHHHHhCC
Q 015905 326 YVVTGLAFAEAHD-----VKALQRTLSYETGMQSSLLALALANRFFQ 367 (398)
Q Consensus 326 ylla~~l~~~~~~-----~~~~~~tl~~~tG~rN~~Lal~LA~~~F~ 367 (398)
+++++ +++.+.- .-=...++.-.....|.++=+++...|-.
T Consensus 90 l~~~~-~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd 135 (314)
T PF03812_consen 90 LLVGK-FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD 135 (314)
T ss_pred HHHHH-HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC
Confidence 77776 4554310 00112333334445677777777766654
No 71
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=47.94 E-value=3.5e+02 Score=28.34 Aligned_cols=142 Identities=22% Similarity=0.337 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhH-HHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHh
Q 015905 111 LPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVS 189 (398)
Q Consensus 111 l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~-l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~ 189 (398)
+.-+.+.+.+.|-.+ .+|.|-+.+.+.|=-+ ++.+.+.-+ +++.+.+ .+++.++.-+.=.+.+-
T Consensus 95 Fl~ffIa~LI~GSIL-------gm~RklLika~~r~~p~il~g~~~a~----~~g~lvG----~l~G~~~~~~i~~i~lP 159 (414)
T PF03390_consen 95 FLYFFIAALIVGSIL-------GMNRKLLIKAFARFIPPILGGVIGAF----LLGGLVG----MLFGYSFKDAIFYIVLP 159 (414)
T ss_pred hHHHHHHHHHHhhhh-------hcCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHhCCCHHHHHHHHHhh
Confidence 444555666666665 7888888888776332 333333333 3344444 35666665444444444
Q ss_pred cCCchh------hHHHHHHhcCCCch---hhHHHHHHHHHHHHHHHHHHHHHHh------hC--------C---------
Q 015905 190 CVSGAQ------LSNYATFLTDPPLA---PLSIVMTSLSTATAVFVTPLLSLLL------IG--------K--------- 237 (398)
Q Consensus 190 ~~Pgg~------~Snv~T~la~Gd~a---aLsl~mt~istlla~~~~Plll~ll------~g--------~--------- 237 (398)
+.-||. .|..+....+.|.+ +-.+..+.+.+++|++.-=++=.+- .| +
T Consensus 160 IMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~ 239 (414)
T PF03390_consen 160 IMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKK 239 (414)
T ss_pred hcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCcccccccccc
Confidence 444443 67788888888852 2344556677777777766665553 11 1
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 238 RLPVDVKGMVSSILQIVVVPIAAGLLLNRFF 268 (398)
Q Consensus 238 ~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~ 268 (398)
..++|+.++...++ +-..=..+|.++++..
T Consensus 240 ~~~~~~~~~g~Gll-la~~~y~~G~ll~~~i 269 (414)
T PF03390_consen 240 EKPIDFSDMGAGLL-LACSFYILGVLLSKLI 269 (414)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 13578877777665 3444456677776653
No 72
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=46.80 E-value=3.4e+02 Score=27.83 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=91.7
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhh---hccCCChhHHH
Q 015905 107 SNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTPIGA 183 (398)
Q Consensus 107 ~~~~l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~---~~~~l~~~la~ 183 (398)
+|+....++.++.++|-.=--..+.+.+ -|+|.|-+..=..+..+..--..+.|.++..+...+. ..++.||..+.
T Consensus 3 i~~iIiyIm~~f~viGaiD~i~gnk~gL-G~~FeeG~~amG~l~l~m~GI~~laP~la~~l~~vi~Pl~~~~GaDPamfa 81 (354)
T PF04346_consen 3 INKIIIYIMMIFMVIGAIDKILGNKFGL-GEKFEEGIMAMGPLALSMAGIMALAPVLAAFLSPVIGPLFQAIGADPAMFA 81 (354)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5666667777777777532111111111 2577777777777888888888899999998886543 45688998887
Q ss_pred HHHHHhcCCchhhHHHHHHhcCCCchhhHHHH-HHHHHHHH---HHHHHHHHHHhhC-----------------------
Q 015905 184 GIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM-TSLSTATA---VFVTPLLSLLLIG----------------------- 236 (398)
Q Consensus 184 GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m-t~istlla---~~~~Plll~ll~g----------------------- 236 (398)
+.++-.=.-|-..+..++. |. +....- ..+++.++ .+++|+-+...-.
T Consensus 82 ~tiLA~DMGGY~LA~~la~----~~-~~~~fsG~ilgsmlG~TIvFtIPVaLgii~k~D~~y~a~Gil~GiitIPiG~~v 156 (354)
T PF04346_consen 82 GTILANDMGGYQLAMELAQ----DP-EAGIFSGLILGSMLGATIVFTIPVALGIIEKEDHKYLAKGILAGIITIPIGCFV 156 (354)
T ss_pred HHHhhhcCcCHHHHHHHcC----Ch-hhHHHHHHHHHHhhcccEEeehhhhhhhcChhhhHHHHHHHHHHHhhhCHHHHH
Confidence 7665433333333222221 21 111111 22222221 2344555444321
Q ss_pred --CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015905 237 --KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 270 (398)
Q Consensus 237 --~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~ 270 (398)
-...+|+..+++.++-++++-++++..++++-.+
T Consensus 157 ggl~~g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~ 192 (354)
T PF04346_consen 157 GGLIAGFDIGMILINLIPVIIFAILLAIGLWFFPEK 192 (354)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 1235778888888888888888998888876443
No 73
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=45.29 E-value=4.3e+02 Score=28.63 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=28.9
Q ss_pred HHHHHHHHhc--hhHHHHHHHHHHhHHH-HHHHHHHhhhhhccCCChhHHHHHH
Q 015905 136 EKDFIEAFKR--PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIM 186 (398)
Q Consensus 136 ~~dl~~~l~~--P~~l~~gl~~qfvimP-lla~~l~~~~~~~~~l~~~la~Gli 186 (398)
-.+|.+.+++ .+.++.+.++ .+.| ++++.+++ ..+++++..+.|++
T Consensus 466 G~~f~~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~---~~~~~~~~~~~G~~ 514 (562)
T TIGR03802 466 GPQAVTAIKEMGLTLFLLGIVV--TILPLIITMLIGK---YVLKYDPALLLGAL 514 (562)
T ss_pred hHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHH---HHhCCCHHHHHHHh
Confidence 3456666666 3334444433 4445 66777774 57999999998874
No 74
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=44.98 E-value=3.5e+02 Score=27.45 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=99.0
Q ss_pred HHhHHHHHHHHHHhhhhhccCCChhHHHHH-HHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHH--
Q 015905 156 QFVVKPILGYIFGTISVSVFGLPTPIGAGI-MLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSL-- 232 (398)
Q Consensus 156 qfvimPlla~~l~~~~~~~~~l~~~la~Gl-iL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~-- 232 (398)
--+++|+++|.+.+ ...++|..=+.++ --.|.....+..-..+++..-+. +..--|+..-.+ .=.|.++.
T Consensus 63 lg~liPl~~~~iLr---~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi-~yeg~m~a~~al---ME~PAIival 135 (327)
T PF05982_consen 63 LGILIPLIAFPILR---RLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGI-SYEGYMVALLAL---MESPAIIVAL 135 (327)
T ss_pred HHHHHHHHHHHHHH---HccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCC-CccccHHHHHHH---HhhhHHHHHH
Confidence 34678999999975 5567876555443 45666666676667777776666 566555544333 33333322
Q ss_pred ----HhhCCc-----------------cccChHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHhcCcCChh--HH
Q 015905 233 ----LLIGKR-----------------LPVDVKGMVSSIL-----QIVVVPIAAGLLLNRFFPRICNAIRPFLPPL--SV 284 (398)
Q Consensus 233 ----ll~g~~-----------------v~vd~~~i~~~Ll-----~~VllPl~lG~llr~~~p~~a~~l~~~l~~~--s~ 284 (398)
++.+++ -+.+.+++.+..+ ..++--+++|++.+. +-.+.++|++... ..
T Consensus 136 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~---~g~~~i~pf~~~lF~G~ 212 (327)
T PF05982_consen 136 LLARLFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAGP---EGVESIKPFFVDLFKGV 212 (327)
T ss_pred HHHHHHhccccccccCCccccccccccccccHHHHHHHHHcCchHHHHHHHHHHhheeCc---cchhhccchhhccHHHH
Confidence 221111 1355777766543 345556666666653 3334455553332 34
Q ss_pred HHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 015905 285 LVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAH 337 (398)
Q Consensus 285 l~llliv~~~~~~n~-~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~ 337 (398)
++++++-....+.++ ..+. ..++..+.-.+++++++-.+|..+++ +.+.+.
T Consensus 213 L~lFLLeMGl~A~~rL~~l~-~~g~~li~Fgi~~Pli~a~ig~~lg~-~~gls~ 264 (327)
T PF05982_consen 213 LCLFLLEMGLVAARRLRDLR-KVGWFLIAFGILMPLINALIGIGLGW-LLGLSP 264 (327)
T ss_pred HHHHHHHhhHHHHHhhHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 666666655555432 3333 34666777778888888888888886 456664
No 75
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=43.72 E-value=1.2e+02 Score=27.08 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC
Q 015905 316 TFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ 367 (398)
Q Consensus 316 ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~ 367 (398)
+..++.-.+.+++++++++.++ . .+...-+|.+...-++.-+...-+
T Consensus 93 ~v~~~~~~~~~~~~~~~~~~~~----~-~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 93 LITVVPTLLVAVALIKLLRINY----A-LTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH----H-HHHHHHhccccChHHHHHHHHHhc
Confidence 3333333445556666677753 3 455555666665555555544333
No 76
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.46 E-value=4.8e+02 Score=28.61 Aligned_cols=86 Identities=15% Similarity=0.098 Sum_probs=42.1
Q ss_pred ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hhHHHHHHHHhcCCchhhHHHHHHhc--CCCc
Q 015905 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSNYATFLT--DPPL 208 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~--~~la~GliL~~~~Pgg~~Snv~T~la--~Gd~ 208 (398)
.++++++++..|+ ++..-..|.++.-+++++++ ..++.+ ..+.+|..+..+++ +....++...- +.+.
T Consensus 74 El~~~~l~~~~~~---~~~~g~~qv~~~~~~~~~~~----~~~g~~~~~al~ig~~la~SSt-aiv~~~L~e~~~l~t~~ 145 (621)
T PRK03562 74 ELDPQRLWKLRRS---IFGGGALQMVACGGLLGLFC----MLLGLRWQVALLIGLGLALSST-AIAMQAMNERNLMVTQM 145 (621)
T ss_pred CcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHH-HHHHHHHHHhccccCch
Confidence 4788888765433 23333345554444445554 344443 44555665554433 33344554433 2222
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 015905 209 APLSIVMTSLSTATAVFV 226 (398)
Q Consensus 209 aaLsl~mt~istlla~~~ 226 (398)
...+++...+.-++++.+
T Consensus 146 G~~~l~~ll~~Dl~~i~l 163 (621)
T PRK03562 146 GRSAFAILLFQDIAAIPL 163 (621)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 124555556666555443
No 77
>COG3641 PfoR Predicted membrane protein, putative toxin regulator [General function prediction only]
Probab=42.75 E-value=2.9e+02 Score=27.95 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcC
Q 015905 149 IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD 205 (398)
Q Consensus 149 l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~ 205 (398)
+-++.+.|+..-|.++.+++ .-|..++...+.....+..-+ ..++++.+
T Consensus 50 ~~vv~~~q~~m~~~IGvlva----~~f~~~~l~~~s~a~aa~igs----Gav~~~~g 98 (348)
T COG3641 50 YHVVVLIQFLMPAGIGVLVA----YQFHANPLVLASVAIAAVIGS----GAVAFLNG 98 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhcc----chHhhhcC
Confidence 45678889999999999998 467777765545444443222 23556665
No 78
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=41.79 E-value=4.4e+02 Score=27.66 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=12.2
Q ss_pred ccCHHHHHHHHhchhH
Q 015905 133 TASEKDFIEAFKRPAA 148 (398)
Q Consensus 133 ~l~~~dl~~~l~~P~~ 148 (398)
+++.||+.+.+++--.
T Consensus 258 ~l~~~~l~~~l~~t~~ 273 (425)
T PRK15060 258 EMTFSTLYHVLINAAK 273 (425)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3789999998887443
No 79
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=41.67 E-value=68 Score=24.52 Aligned_cols=36 Identities=22% Similarity=0.524 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Q 015905 242 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP 277 (398)
Q Consensus 242 d~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~ 277 (398)
+..+++.-+.+..++=+-+|.+.++++|++-+.+..
T Consensus 2 ~i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~ 37 (62)
T PF11120_consen 2 NISDIIQIIILCALIFFPLGYLARRWLPRIRRTLRR 37 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 345565555566666677899999999987766554
No 80
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=41.57 E-value=3.5e+02 Score=31.59 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchh--hHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 015905 150 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQ--LSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 227 (398)
Q Consensus 150 ~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~--~Snv~T~la~Gd~aaLsl~mt~istlla~~~~ 227 (398)
+++..+.-.++|.+..+- .-+++++.++ |+.+++.+-+.+ .++++.-+ .|+. .+++.-.+=|++.-+.++
T Consensus 470 ~LaIv~dDyFVPSLe~IA-----ekLgLSE~VA-GaTLLAfGTSAPELfTSLiAv~-~g~s-DIGVGNIVGSnIFNILLV 541 (1096)
T TIGR00927 470 ALAIVCDEYFVPALGVIT-----DKLQISEDVA-GATFMAAGGSAPELFTSLIGVF-ISHS-NVGIGTIVGSAVFNILFV 541 (1096)
T ss_pred HHHHHHHHHhHHHHHHHH-----HHhCCcHhhh-heeeeeeecCcHHHHHHHHHHH-cCCC-cceehhhHhHHHHHHHHH
Confidence 344445455566665544 4678888877 998888865555 33443322 2333 344444444444444444
Q ss_pred HHHHHHhhCCccccChHHHHHHHH
Q 015905 228 PLLSLLLIGKRLPVDVKGMVSSIL 251 (398)
Q Consensus 228 Plll~ll~g~~v~vd~~~i~~~Ll 251 (398)
.-...++.+..++++.+.+...+.
T Consensus 542 LGl~aLis~~~l~Ld~~~L~RDll 565 (1096)
T TIGR00927 542 IGTCALFSREILNLTWWPLFRDVS 565 (1096)
T ss_pred HhhheeeccccccccccceehhHH
Confidence 444444433334555544444443
No 81
>PRK03818 putative transporter; Validated
Probab=40.81 E-value=2e+02 Score=31.10 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHH
Q 015905 306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 364 (398)
Q Consensus 306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~ 364 (398)
.++...+..++..++...+++++++++++.++ . .++..-+|.+...-++.-+..
T Consensus 462 ~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~----~-~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 462 EGLSWIGYGFLITAVPLLIVGILARMLAKMNY----L-TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----H-HHHHHHhccCCCcHHHHHHhc
Confidence 35555566666677777778888777778764 3 344444444444444444433
No 82
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=40.63 E-value=1.4e+02 Score=26.53 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHH
Q 015905 104 LKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGA 183 (398)
Q Consensus 104 l~~~~~~l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~ 183 (398)
+..++++-.-|=+....+|...|=.-. +++.+|+.+.+++|+.... +++-..+.=+-+-++ .+++.+|++..
T Consensus 38 ~p~le~~Gl~~GiiiLtiaiLvPiAtG--ki~~~~l~~~f~s~~g~~A-i~~Gilva~l~g~Gv-----~Ll~~~P~v~~ 109 (140)
T PF04284_consen 38 FPFLEKKGLNWGIIILTIAILVPIATG--KIGFKDLLNSFKSWKGIIA-ILAGILVAWLGGRGV-----NLLKVQPQVIV 109 (140)
T ss_pred hHHHHHhChhHhHHHHHHHHHccccCC--CcCHHHHHHHHhCHHHHHH-HHHHHHHHHHhccCh-----HHHccCChhhH
Confidence 666666644444555566666653322 5899999999999987653 222222222333333 35677888887
Q ss_pred HHHH
Q 015905 184 GIML 187 (398)
Q Consensus 184 GliL 187 (398)
|+++
T Consensus 110 gLvi 113 (140)
T PF04284_consen 110 GLVI 113 (140)
T ss_pred HHHH
Confidence 7766
No 83
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=38.97 E-value=1.1e+02 Score=30.69 Aligned_cols=19 Identities=47% Similarity=1.006 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 015905 253 IVVVPIAAGLLLNRFFPRI 271 (398)
Q Consensus 253 ~VllPl~lG~llr~~~p~~ 271 (398)
++++|+.+|.++|.++|+.
T Consensus 14 ~m~vPl~lga~inTf~P~~ 32 (312)
T PRK12460 14 MMVVPLLIGALINTFFPQA 32 (312)
T ss_pred eeHHHHHHHHHHHhccCcc
Confidence 5789999999999999986
No 84
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=38.00 E-value=5.7e+02 Score=27.88 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhc
Q 015905 95 NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV 174 (398)
Q Consensus 95 ~~~~~~~~~l~~~~~~l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~ 174 (398)
+.+....+.++.++.++.-++.++ +|+.. |+.....+|..++..++.-.++.++..++.+ ..
T Consensus 254 ~~~~~l~~~i~pf~~lll~lFFi~--vGm~i------------d~~~l~~~~~~il~~~~~~l~~K~~~~~~~~----~~ 315 (601)
T PRK03659 254 EYRHELEIAIEPFKGLLLGLFFIS--VGMAL------------NLGVLYTHLLWVLISVVVLVAVKGLVLYLLA----RL 315 (601)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--Hhhhc------------cHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q ss_pred cCCChhHHHHHHHHhcCCchhhHHH--HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905 175 FGLPTPIGAGIMLVSCVSGAQLSNY--ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 234 (398)
Q Consensus 175 ~~l~~~la~GliL~~~~Pgg~~Snv--~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll 234 (398)
++.+...+ -.+-+..+|+|-.+-+ -.....|-..+-.........+++.+++|++..++
T Consensus 316 ~g~~~~~a-l~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 316 YGLRSSER-MQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred hCCCHHHH-HHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
No 85
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=35.34 E-value=6.6e+02 Score=27.85 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhh----ccCCChhHHHHHH
Q 015905 111 LPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS----VFGLPTPIGAGIM 186 (398)
Q Consensus 111 l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~----~~~l~~~la~Gli 186 (398)
+.+.+..|.++|+++|.+.+.+- ...+--|-. .++.+-|+.+ |+++. .-++.|+.+
T Consensus 458 L~lt~~~siiLGMGlPttanYIi------~atl~aP~l------~~~gv~~laa----H~FVFYfGi~AdiTPPVa---- 517 (642)
T COG4666 458 LVLTMVISIILGMGLPTTANYII------TATLAAPAL------IELGVPLLAA----HFFVFYFGIMADITPPVA---- 517 (642)
T ss_pred HHHHHHHHHHhcCCCCCccHHHH------HHHHHHHHH------HHcCchHHHH----HHHHHHHHHHccCCChHH----
Confidence 45667788899999999876541 122222222 2222222222 22222 223444443
Q ss_pred HHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhC-CccccChHHHHHHHHHHHHHHHHHHHHHH
Q 015905 187 LVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG-KRLPVDVKGMVSSILQIVVVPIAAGLLLN 265 (398)
Q Consensus 187 L~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g-~~v~vd~~~i~~~Ll~~VllPl~lG~llr 265 (398)
.++.+-+..+|+|- .-+..+...--+.-++.|+.+..=-+ --++.|+.++..-....++.=+++|....
T Consensus 518 --------LaAfAaA~IA~~dp--~kTg~~a~k~al~~~ivpf~fv~~P~lll~~~~~~~~~~~~~~a~ig~~~~~aa~~ 587 (642)
T COG4666 518 --------LAAFAAAGIAGADP--VKTGFTAFKLALAKFIVPFMFVYNPALLLIPVDFAEILLAFATAVIGILALGAASS 587 (642)
T ss_pred --------HHHHHHhhhcCCCc--HHHHHHHHHHHHHHHHhhhhhhhchhhheecccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455677889985 88899999999999999987643111 02466777777666666666666666666
Q ss_pred HHhHH
Q 015905 266 RFFPR 270 (398)
Q Consensus 266 ~~~p~ 270 (398)
.++.+
T Consensus 588 Gy~~~ 592 (642)
T COG4666 588 GYLFG 592 (642)
T ss_pred hhhhc
Confidence 65443
No 86
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=33.82 E-value=3.6e+02 Score=28.24 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=34.0
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg 194 (398)
.|.+|+.+.+ .|..++..+.. .+.+-+.++.+++++ .+.+.|..+..|+ |.+--||
T Consensus 322 ~~l~~l~~a~-t~~~vv~~~~~-Vl~~~~~a~~vG~l~-g~YPvEsAItaGL--C~an~GG 377 (414)
T PF03390_consen 322 TDLNDLIAAF-TPQYVVIVLAT-VLGAVIGAFLVGKLV-GFYPVESAITAGL--CMANMGG 377 (414)
T ss_pred CcHHHHHHHh-CHHHHHHHHHH-HHHHHHHHHHHHHHh-CCChHHHHHHhhh--cccCCCC
Confidence 6899999999 77766665544 344557788888522 2344455555444 4444455
No 87
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=33.53 E-value=75 Score=31.87 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhcC
Q 015905 253 IVVVPIAAGLLLNRFFPRICNAIRP 277 (398)
Q Consensus 253 ~VllPl~lG~llr~~~p~~a~~l~~ 277 (398)
++++|+++|.+++.++|+.-+.+..
T Consensus 14 ~MiVPLllga~inTf~P~~~~~~Gg 38 (314)
T TIGR00793 14 MMLVPLFLGALCHTFAPGAGKYFGS 38 (314)
T ss_pred eeHHHHHHHHHHHhcCCchhhhcCc
Confidence 5789999999999999987554333
No 88
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=33.44 E-value=6.1e+02 Score=27.00 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=23.5
Q ss_pred HhHHH-HHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905 157 FVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194 (398)
Q Consensus 157 fvimP-lla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg 194 (398)
|-.+| +++|-.+ +-|+-+|.+++.+-.+-+.|.-
T Consensus 168 FyFLPi~va~sAa----K~f~~np~lg~~ig~~L~~P~~ 202 (473)
T PRK11007 168 FFYLPVGICWSAV----KKMGGTPILGIVLGVTLVSPQL 202 (473)
T ss_pred HHHHHHHHHHHHH----HHhCCChHHHHHHHHHHhCcch
Confidence 55667 4566666 6889999887666666667743
No 89
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=32.72 E-value=5.6e+02 Score=26.23 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCHHHHHHHHhchhH-HHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHh
Q 015905 111 LPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVS 189 (398)
Q Consensus 111 l~~~il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~-l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~ 189 (398)
+.-+.+.+.+.|-.+ ++|.+-+.+.+.|=-+ ++.+.+.-++ .+.+.+ .+++.++.-+.=.+.+-
T Consensus 26 Fl~fyIa~LI~GSIL-------~m~Rk~Lik~~~r~~p~il~g~~~a~~----~g~lvG----~l~G~~~~~~~~~i~lP 90 (347)
T TIGR00783 26 FLYLYIACLIVGSIL-------GMNRKLLLKALMRFIPPALIGMVLAVI----VGILVG----TLFGLGFDHSLMYIVMP 90 (347)
T ss_pred hHHHHHHHHHHhhhh-------hccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHcCCCHhHhhheeeeh
Confidence 444556666666665 7888888888877333 3333333333 333344 35566655443333333
Q ss_pred cCCchh------hHHHHHHhcCCCch---hhHHHHHHHHHHHHHHHHHHHHHH
Q 015905 190 CVSGAQ------LSNYATFLTDPPLA---PLSIVMTSLSTATAVFVTPLLSLL 233 (398)
Q Consensus 190 ~~Pgg~------~Snv~T~la~Gd~a---aLsl~mt~istlla~~~~Plll~l 233 (398)
+.-||. .|..+....+.|.+ +-.+-.+++.+++|++.-=++=.+
T Consensus 91 Im~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~l 143 (347)
T TIGR00783 91 IMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRI 143 (347)
T ss_pred hcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443 66778877777741 234455667788888777666444
No 90
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=31.66 E-value=5.6e+02 Score=25.95 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=41.1
Q ss_pred hccCCChhHHHHHHHHhcCCchhhHHH-H---HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015905 173 SVFGLPTPIGAGIMLVSCVSGAQLSNY-A---TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 235 (398)
Q Consensus 173 ~~~~l~~~la~GliL~~~~Pgg~~Snv-~---T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~ 235 (398)
+.+++|++.+ -++-+|.+=||.++.. . .+--+-|. +++++.+.+-..++++..|.+-.++.
T Consensus 112 k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~-a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 112 SRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKV-SVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccce-eeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888755 3444444444443322 2 23345567 79999999999999999999987663
No 91
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.34 E-value=14 Score=27.36 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=29.4
Q ss_pred CCCCCCCCccccccccccccccchHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 015905 76 GPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVF 125 (398)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~il~~~~lg~~~ 125 (398)
..+||++|.||....-.-+++++ +.-+..++++++++.|++.
T Consensus 5 ~pEDQ~~Vd~yL~a~~~~VER~P--------FrP~~Ll~~li~Vv~gl~l 46 (55)
T PF11293_consen 5 NPEDQQRVDEYLQAGVNQVERKP--------FRPWRLLIVLIVVVIGLGL 46 (55)
T ss_pred CHHHHHHHHHHHhCCCCccccCC--------cchHHHHHHHHHHHHHHHH
Confidence 35788999999988866667665 3445566677777777664
No 92
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.29 E-value=97 Score=24.27 Aligned_cols=44 Identities=18% Similarity=0.408 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCccccc-hhhheeeecccccH
Q 015905 312 LLIITFHLSAFVAGYVVTGLAFA----EAHDVKA-LQRTLSYETGMQSS 355 (398)
Q Consensus 312 la~~ll~l~gf~lGylla~~l~~----~~~~~~~-~~~tl~~~tG~rN~ 355 (398)
+..++..+.|++.||+++|+.+. ..|...+ .-|++....|.+-+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~~iR~M~~qmGqKpS 56 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQKPS 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCch
Confidence 33444556788999999988533 2221112 23555555555443
No 93
>PRK04972 putative transporter; Provisional
Probab=28.35 E-value=5.1e+02 Score=28.12 Aligned_cols=96 Identities=18% Similarity=-0.019 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015905 255 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP---FGLTILLLIITFHLSAFVAGYVVTGL 331 (398)
Q Consensus 255 llPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~---~~~~i~la~~ll~l~gf~lGylla~~ 331 (398)
.-|++.|+++-++-++ + -+.+..+++.+.++.+=......+.+. .++...+..++.++.+..+++.+++
T Consensus 41 ~g~L~vgl~~g~~~~~----~---~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~- 112 (558)
T PRK04972 41 IGVLVVSLLLGQQHFS----I---NTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGK- 112 (558)
T ss_pred hHHHHHHHHHHhCCCC----C---ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566677776665322 1 112233444444433322223333332 2566667777888888888888776
Q ss_pred hhcCCccccchhhheeeecccccH-HHHHHHH
Q 015905 332 AFAEAHDVKALQRTLSYETGMQSS-LLALALA 362 (398)
Q Consensus 332 l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA 362 (398)
+++.++ ...+=.++.++-|+ +++.+.-
T Consensus 113 ~~~~~~----~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 113 LFGWDI----GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HhCCCH----HHHHHHhhccccCcHHHHHHHH
Confidence 577763 44444555555553 4565544
No 94
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=28.03 E-value=2.1e+02 Score=29.68 Aligned_cols=76 Identities=12% Similarity=0.008 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH---HHHHHHHHHhC-----CCCc-chhHHHHHHHHHHH
Q 015905 314 IITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS---LLALALANRFF-----QDPL-VSVPPAISTVIMSL 384 (398)
Q Consensus 314 ~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~---~Lal~LA~~~F-----~~p~-valp~~iy~v~q~i 384 (398)
+.+-.++|..+||++.+ ++++++ +.+.=+.-+++.+|+ .++++-|..+- +|++ .+--.+.|..+-+-
T Consensus 82 v~Lt~~ig~liG~lv~~-I~rppp---~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~ 157 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVK-ILRPPP---QLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQ 157 (408)
T ss_pred HHHHHHHHHHHHHHHhh-eecCCh---hhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHH
Confidence 55567889999999997 567776 344444445666665 46666555443 2333 23333456665555
Q ss_pred HHHHHHHHH
Q 015905 385 MGFFLVMLW 393 (398)
Q Consensus 385 ~g~~la~~~ 393 (398)
.|.++...|
T Consensus 158 lg~il~wty 166 (408)
T KOG2722|consen 158 LGQILRWTY 166 (408)
T ss_pred hhhhEEEEE
Confidence 666654333
No 95
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=27.61 E-value=4.7e+02 Score=23.73 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHH
Q 015905 210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQ--IVVVPIAAGLLLNRFFPRICN 273 (398)
Q Consensus 210 aLsl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~--~VllPl~lG~llr~~~p~~a~ 273 (398)
........++.+++.+.+|++...+..+ +.....+..++.. ..+.-+.++..+.|..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~ 69 (273)
T PF01943_consen 6 LWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKD 69 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 3556677788889999999998877322 3333444444332 233455566666666555443
No 96
>PRK01844 hypothetical protein; Provisional
Probab=27.48 E-value=1.1e+02 Score=23.99 Aligned_cols=43 Identities=7% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCccccch-hhheeeeccccc
Q 015905 312 LLIITFHLSAFVAGYVVTGLAFA----EAHDVKAL-QRTLSYETGMQS 354 (398)
Q Consensus 312 la~~ll~l~gf~lGylla~~l~~----~~~~~~~~-~~tl~~~tG~rN 354 (398)
+..++..+.|.+.|++++|+.+. ..|...++ -|++....|.+-
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkP 55 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKP 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCc
Confidence 33445667889999999987543 22211122 466666666543
No 97
>PRK03818 putative transporter; Validated
Probab=27.29 E-value=3.8e+02 Score=29.01 Aligned_cols=102 Identities=10% Similarity=0.013 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhcCc-CChhHHHHHHHHHHHHHHhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 015905 255 VVPIAAGLLLNRFFPRICNAIRPF-LPPLSVLVTACCVGAPLAINIESVMSP---FGLTILLLIITFHLSAFVAGYVVTG 330 (398)
Q Consensus 255 llPl~lG~llr~~~p~~a~~l~~~-l~~~s~l~llliv~~~~~~n~~~i~~~---~~~~i~la~~ll~l~gf~lGylla~ 330 (398)
.-+++.|+++-++.+++.-++.+. ...+..+++.+.++.+=......+.+. .++...+..++.++.+..+++.+.
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~- 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILH- 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 566777777776543221111111 011233444444433322223333332 356666677777888888888875
Q ss_pred HhhcCCccccchhhheeeecccccH-HHHHHH
Q 015905 331 LAFAEAHDVKALQRTLSYETGMQSS-LLALAL 361 (398)
Q Consensus 331 ~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~L 361 (398)
++++.++ ...+=.++.++-|+ +++.+.
T Consensus 113 ~~~~~~~----~~~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 113 KLFGIPL----PVMLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HHhCCCH----HHHHHHhhccccccHHHHHHH
Confidence 4677753 33444444444443 455554
No 98
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=25.29 E-value=5.2e+02 Score=26.43 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=30.1
Q ss_pred cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905 134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194 (398)
Q Consensus 134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg 194 (398)
.+++|+.+.+. |..+++.+ .-.+-+-+.++.+++++ ...+.|..+..| +|.+.-||
T Consensus 255 t~l~~L~~a~t-~~~vviiv-~~Vlg~ii~s~lvGKll-G~YPiE~aItag--LC~~~~GG 310 (347)
T TIGR00783 255 IDLDDLVAALS-WQFVVICL-SVVVAMILGGAFLGKLM-GMYPVESAITAG--LCNSGMGG 310 (347)
T ss_pred CCHHHHHHHhc-hhHhhhHH-HHHHHHHHHHHHHHHHh-CCChHHHHHHHh--hhccCCCC
Confidence 68999999885 44333333 23344456777788521 233444444444 34444466
No 99
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=24.43 E-value=1.2e+02 Score=18.16 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 015905 253 IVVVPIAAGLLLNRF 267 (398)
Q Consensus 253 ~VllPl~lG~llr~~ 267 (398)
.++.|+++|+.++-+
T Consensus 3 ~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHH
Confidence 578999999988754
No 100
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=23.98 E-value=8.7e+02 Score=25.62 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=25.9
Q ss_pred ecccccHHHHHHHHHH-hCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905 349 ETGMQSSLLALALANR-FFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 349 ~tG~rN~~Lal~LA~~-~F~~p~valp~~iy~v~q~i~g~~la~~~~~~~ 397 (398)
-+|+++.-..+.+... .++ .+...|....+-+. ..|+.++.+.+.|+
T Consensus 318 ~~GlH~~l~~i~~~~~a~~G-~~~~~~~~~~~~~a-q~ga~lav~lk~k~ 365 (462)
T TIGR01992 318 ITGLHHMFLAVDLQLIGSLG-GTFLWPMIALSNIA-QGSAALGIIFMSRN 365 (462)
T ss_pred HhccchhhHHHHHHHHHHhC-cchHHHHHHHHHHH-HHHHHHHHHHHHCC
Confidence 4788887776655542 344 33445654444333 36666666555443
No 101
>PRK00523 hypothetical protein; Provisional
Probab=23.88 E-value=1.5e+02 Score=23.41 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCccccch-hhheeeecccccH
Q 015905 313 LIITFHLSAFVAGYVVTGLAFA----EAHDVKAL-QRTLSYETGMQSS 355 (398)
Q Consensus 313 a~~ll~l~gf~lGylla~~l~~----~~~~~~~~-~~tl~~~tG~rN~ 355 (398)
.+++..+.|.+.|++++|+.+. ..|...++ -|++....|.+-+
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPS 57 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPS 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCcc
Confidence 3444567899999999987543 12211122 4666666665433
No 102
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=23.42 E-value=8e+02 Score=25.03 Aligned_cols=102 Identities=13% Similarity=0.306 Sum_probs=52.9
Q ss_pred HHHHHHHhhhhhccCCChhHHHHHHH--HhcC--CchhhH--HHHHHhcCCCc-hhhHHHHHHHHHHHHHH-HHHHHHHH
Q 015905 162 ILGYIFGTISVSVFGLPTPIGAGIML--VSCV--SGAQLS--NYATFLTDPPL-APLSIVMTSLSTATAVF-VTPLLSLL 233 (398)
Q Consensus 162 lla~~l~~~~~~~~~l~~~la~GliL--~~~~--Pgg~~S--nv~T~la~Gd~-aaLsl~mt~istlla~~-~~Plll~l 233 (398)
+++.+++ .+++++|.+ |++. .+.. +|+..+ +.+...-|=+. ..++++..++..+.+.+ =.|+.=++
T Consensus 109 ~vG~~la----~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~l 182 (368)
T PF03616_consen 109 IVGLGLA----KLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWL 182 (368)
T ss_pred HHHHHHH----HHhCCCchH--HHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 467888754 4432 1222 343333 44544412121 13555555666666533 45765444
Q ss_pred hhC------C------------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015905 234 LIG------K------------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 270 (398)
Q Consensus 234 l~g------~------------------~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~ 270 (398)
.-. + .-+++..+++..+. ++.+.+.+|..++.+..+
T Consensus 183 irk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~-~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 183 IRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLA-LILIAIGLGYIISALLKK 242 (368)
T ss_pred HHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 310 0 01234556666665 677888888888877543
No 103
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.46 E-value=3.7e+02 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 015905 244 KGMVSSILQIVVVPIAAGLLLNRFFPR 270 (398)
Q Consensus 244 ~~i~~~Ll~~VllPl~lG~llr~~~p~ 270 (398)
..++.++...+++|+++|.++-++..+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667778888888888888877654
No 104
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=21.88 E-value=9e+02 Score=25.05 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCccc-------------------ccCHHHHHHHHhchhHHHHHHHHH
Q 015905 96 QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWF-------------------TASEKDFIEAFKRPAAIFAGYVGQ 156 (398)
Q Consensus 96 ~~~~~~~~l~~~~~~l~~~il~~~~lg~~~P~~~~~l-------------------~l~~~dl~~~l~~P~~l~~gl~~q 156 (398)
.+.++.+.++...+.++-..+-..++|-.....|+.- .++.+|+.+.+++--........-
T Consensus 156 ~~~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~iav~yal~v~~~vYr~l~~~~l~~~l~~a~~~t~~Vm~i 235 (379)
T COG1593 156 ERASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIAVLYALLVGAFVYRELTLKELPKVLLEAVKTTAVVMFI 235 (379)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888877764433333333333333333221 278888888887743333222222
Q ss_pred HhHHHHHHHHHHhhhhhccCCChhHHHH
Q 015905 157 FVVKPILGYIFGTISVSVFGLPTPIGAG 184 (398)
Q Consensus 157 fvimPlla~~l~~~~~~~~~l~~~la~G 184 (398)
..-.-..+|.+. .-+.++.++.-
T Consensus 236 va~a~~f~~~lt-----~~~vp~~la~~ 258 (379)
T COG1593 236 VAAAAAFAWLLT-----VEQVPQQLADW 258 (379)
T ss_pred HHHHHHHHHHHH-----HhccHHHHHHH
Confidence 222224445543 45666655533
No 105
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=20.84 E-value=7.2e+02 Score=23.53 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHH
Q 015905 257 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 289 (398)
Q Consensus 257 Pl~lG~llr~~~p~~a~~l~~~l~~~s~l~lll 289 (398)
=..+-+++|++.|+..+.+..+++.+..=|.++
T Consensus 83 V~~ve~~l~a~~p~Ly~~LGiflpLIvtNC~VL 115 (209)
T PRK09292 83 VIVVDQVLKAYAYDISKQLSVFVGLIITNCIVM 115 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345678899999999999999988766544433
Done!