Query 015905
Match_columns 398
No_of_seqs 197 out of 1635
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 04:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 8.8E-49 3E-53 389.0 31.5 287 101-397 10-314 (332)
2 2kv5_A FST, putative uncharact 35.0 11 0.00039 24.1 0.7 19 249-267 3-21 (33)
3 2ks1_B Epidermal growth factor 16.1 2.1E+02 0.0072 19.3 4.2 29 369-397 11-39 (44)
4 3hzq_A Large-conductance mecha 11.4 6.2E+02 0.021 20.5 6.9 43 218-260 51-100 (114)
5 3zux_A Transporter, ASBTNM; tr 11.2 9.3E+02 0.032 22.5 11.9 24 254-277 20-43 (332)
6 2oar_A Large-conductance mecha 8.0 1E+03 0.035 20.7 7.5 60 200-260 29-109 (174)
7 2l2t_A Receptor tyrosine-prote 7.7 3.3E+02 0.011 18.4 2.9 13 385-397 26-38 (44)
8 2jwa_A Receptor tyrosine-prote 7.0 4.9E+02 0.017 17.5 3.5 21 377-397 19-39 (44)
9 3gz2_P Invasin IPAB, 62 kDa an 5.7 3.4E+02 0.011 19.7 2.3 46 3-56 28-77 (78)
10 1vf5_F Protein PET M; photosyn 5.7 6.5E+02 0.022 16.1 3.9 21 310-330 8-28 (35)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=8.8e-49 Score=389.05 Aligned_cols=287 Identities=29% Similarity=0.485 Sum_probs=267.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCcccc-----------------cCHHHHHHHHhchhHHHHHHHHHHhHHHHH
Q 015905 101 VNILKQSNSFLPHVVLGSTMLALVFPPSFTWFT-----------------ASEKDFIEAFKRPAAIFAGYVGQFVVKPIL 163 (398)
Q Consensus 101 ~~~l~~~~~~l~~~il~~~~lg~~~P~~~~~l~-----------------l~~~dl~~~l~~P~~l~~gl~~qfvimPll 163 (398)
.++.+++++++++++++++++|+.+|+.+.+++ ++.+|+++.++|||.+..++++||+++|++
T Consensus 10 ~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll 89 (332)
T 3zux_A 10 SKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPAT 89 (332)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 345777889999999999999999999887753 899999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccCh
Q 015905 164 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDV 243 (398)
Q Consensus 164 a~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd~ 243 (398)
+|+++ ..++++++++.|+++++||||+++||+||+++|||. ++++++|.+||+++++++|+++.++.|+++++|+
T Consensus 90 ~~~l~----~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~ 164 (332)
T 3zux_A 90 AWCLS----KLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQA 164 (332)
T ss_dssp HHHHH----HHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHH----HHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCH
Confidence 99998 468999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 015905 244 KGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFV 323 (398)
Q Consensus 244 ~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~ 323 (398)
++++++++.++++|+++|+++|++.|++++++++.++.++.++++++++..++.+.+.+.+. ...++.++++++.++|.
T Consensus 165 ~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~ 243 (332)
T 3zux_A 165 AGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYL 243 (332)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888887777654 45667778899999999
Q ss_pred HHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905 324 AGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 324 lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~-~p~valp~~iy~v~q~i~g~~la~~~~~~~ 397 (398)
+||+++| +++.++ +|++|+++|+|+||+++|+++|..+|+ +|++++|+++|+++|++.|++++.+|+||+
T Consensus 244 lg~~~~r-~~~~~~---~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~ 314 (332)
T 3zux_A 244 LGFFAAK-WTGLPY---DAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA 314 (332)
T ss_dssp HHHHHHH-HTTCCH---HHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-HhCCCH---hHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999998 468776 899999999999999999999999997 689999999999999999999999999886
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=35.01 E-value=11 Score=24.09 Aligned_cols=19 Identities=32% Similarity=0.732 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015905 249 SILQIVVVPIAAGLLLNRF 267 (398)
Q Consensus 249 ~Ll~~VllPl~lG~llr~~ 267 (398)
.++..++.|+++|+.++-+
T Consensus 3 ~i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999864
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.09 E-value=2.1e+02 Score=19.29 Aligned_cols=29 Identities=3% Similarity=0.174 Sum_probs=13.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905 369 PLVSVPPAISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 369 p~valp~~iy~v~q~i~g~~la~~~~~~~ 397 (398)
|.++..++...+.-.+++..+..+||||+
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 33444443333333344455556777665
No 4
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=11.38 E-value=6.2e+02 Score=20.52 Aligned_cols=43 Identities=9% Similarity=0.291 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCc-------cccChHHHHHHHHHHHHHHHHH
Q 015905 218 LSTATAVFVTPLLSLLLIGKR-------LPVDVKGMVSSILQIVVVPIAA 260 (398)
Q Consensus 218 istlla~~~~Plll~ll~g~~-------v~vd~~~i~~~Ll~~VllPl~l 260 (398)
++.+..=+++|++-.+..|.. +.+++...+..++-.+++-.++
T Consensus 51 V~SlV~dIImPlIg~l~gg~df~~~l~~~~i~yG~Fi~avInFlIiA~vi 100 (114)
T 3hzq_A 51 ICSLVENIIMPLIGKIFGSVDFAKEWSFWGIKYGLFIQSVIDFIIIAFAL 100 (114)
T ss_dssp HHHHHHHTHHHHHHHSSSCSCCCTTCCCSSCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCeeeeeeeHHHHHHHHHHHHHHHHHH
Confidence 445555567887765544432 2366666666665555554444
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=11.20 E-value=9.3e+02 Score=22.51 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcC
Q 015905 254 VVVPIAAGLLLNRFFPRICNAIRP 277 (398)
Q Consensus 254 VllPl~lG~llr~~~p~~a~~l~~ 277 (398)
..+-++++.++-.++|+..+.+++
T Consensus 20 ~~l~i~~~~~lg~~~P~~~~~~~~ 43 (332)
T 3zux_A 20 FSLWAALFAAAAFFAPDTFKWAGP 43 (332)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGGG
T ss_pred HHHHHHHHHHHHHHcchhhhhhHH
Confidence 444556677777788876665543
No 6
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=8.05 E-value=1e+03 Score=20.67 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=33.9
Q ss_pred HHHhcCCCchhhHHHHH-------HHHHHHHHHHHHHHHHHhhCCc--------------cccChHHHHHHHHHHHHHHH
Q 015905 200 ATFLTDPPLAPLSIVMT-------SLSTATAVFVTPLLSLLLIGKR--------------LPVDVKGMVSSILQIVVVPI 258 (398)
Q Consensus 200 ~T~la~Gd~aaLsl~mt-------~istlla~~~~Plll~ll~g~~--------------v~vd~~~i~~~Ll~~VllPl 258 (398)
-.++.+||+..||+... +++.+..=+++|++- ++.|.. +.++++..+..++-.+++-.
T Consensus 29 KeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg-l~Gg~dfs~l~~~l~~~~~~~~i~yG~Fi~avInFlIIA~ 107 (174)
T 2oar_A 29 KEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN-RIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAF 107 (174)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCTTTCCSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhCCCCcccceEEEecCCCceeeeHHHHHHHHHHHHHHHH
Confidence 45566777655555543 345555567888876 443311 23566666666665555555
Q ss_pred HH
Q 015905 259 AA 260 (398)
Q Consensus 259 ~l 260 (398)
++
T Consensus 108 vI 109 (174)
T 2oar_A 108 AV 109 (174)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.73 E-value=3.3e+02 Score=18.38 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhcc
Q 015905 385 MGFFLVMLWAKKS 397 (398)
Q Consensus 385 ~g~~la~~~~~~~ 397 (398)
++.....+||||+
T Consensus 26 i~~~~~~~~RRRr 38 (44)
T 2l2t_A 26 VGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhh
Confidence 3344445676664
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.00 E-value=4.9e+02 Score=17.52 Aligned_cols=21 Identities=10% Similarity=0.447 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 015905 377 ISTVIMSLMGFFLVMLWAKKS 397 (398)
Q Consensus 377 iy~v~q~i~g~~la~~~~~~~ 397 (398)
+..+.-.+.+..+..++|||+
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 343344445555566666664
No 9
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=5.73 E-value=3.4e+02 Score=19.65 Aligned_cols=46 Identities=33% Similarity=0.390 Sum_probs=27.1
Q ss_pred cchhhHHHHhhhcccceeeEEeec----ccccccCCCCCcccccCccccccccccCCc
Q 015905 3 LNANMLQAQRSRFNSKTFSLTISK----HNIPVLPRNRSLSFSTSWCPVHFRSISHSN 56 (398)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (398)
|..|-.||....-| |-|||||.. |+|.. .|. - +...++.|..++|.
T Consensus 28 lgdntiqaandaan-klfsltiadltanqnint--tna---h--stsnilipelkapk 77 (78)
T 3gz2_P 28 LGDNTIQAANDAAN-KLFSLTIADLTANQNINT--TNA---H--STSNILIPELKAPK 77 (78)
T ss_pred cCccHHHHHHHHhh-hhheeehhhhcccccccc--ccc---c--cccceecccccCCC
Confidence 45677888766544 889999864 22221 111 1 22346678777773
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.65 E-value=6.5e+02 Score=16.12 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015905 310 ILLLIITFHLSAFVAGYVVTG 330 (398)
Q Consensus 310 i~la~~ll~l~gf~lGylla~ 330 (398)
+...+..+.++|..+|+.+-|
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLk 28 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhe
Confidence 445567778889999998875
Done!