BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015906
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RZO|B Chain B, Agglutinin From Ricinus Communis With Galactoaza
 pdb|1RZO|D Chain D, Agglutinin From Ricinus Communis With Galactoaza
          Length = 262

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 24/159 (15%)

Query: 7   DVCMDKEADCVIVYSNGVSHDSDHETIPNHHDVAGPFEHFDGDP-QLQSLVESTEVKEYE 65
           DVCMD E    IV  NG+  D   E            E FDG+P QL     +T+  +  
Sbjct: 2   DVCMDPEPIVRIVGRNGLCVDVTGE------------EFFDGNPIQLWPCKSNTDWNQLW 49

Query: 66  V--KECTSETS---IEVEKGK-EEQNVVSSMPEAGLPAEKTKPEDVKTKENNKSHLVVKH 119
              K+ T  ++   + + K    +Q V+ +   A + A + +  D +T  N +S LV+  
Sbjct: 50  TLRKDSTIRSNGKCLTISKSSPRQQVVIYNCSTATVGATRWQIWDNRTIINPRSGLVL-- 107

Query: 120 ASKATAGNVRTKHTI-PQPFSLATEKRASNGTRPTAAEL 157
              AT+GN  TK T+    ++++     +N T+P    +
Sbjct: 108 --AATSGNSGTKLTVQTNIYAVSQGWLPTNNTQPFVTTI 144


>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik)
 pdb|4DN5|B Chain B, Crystal Structure Of Nf-kb-inducing Kinase (nik)
          Length = 356

 Score = 32.0 bits (71), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 318 DAASLNQGDQVKGTSRTGNRQSL-GNYREDTTLFSTDKKDPSNIPNGHVICKLQDNPKLA 376
           D A    G  ++G     +R+ L G+ + D  L S+D    +    GH +C   D   L 
Sbjct: 166 DRALYYLGQALEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQPDG--LG 223

Query: 377 EDIMA----PKVNVHSNPEI 392
           +D++     P    H  PE+
Sbjct: 224 KDLLTGDYIPGTETHMAPEV 243


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.125    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,494,532
Number of Sequences: 62578
Number of extensions: 449895
Number of successful extensions: 761
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)