Query 015906
Match_columns 398
No_of_seqs 122 out of 141
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 02:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.8 2.2E-19 4.7E-24 137.7 7.8 57 227-283 1-57 (57)
2 PF12214 TPX2_importin: Cell c 93.4 0.11 2.5E-06 48.4 4.7 126 129-312 2-129 (176)
3 PF10595 UPF0564: Uncharacteri 72.3 6.4 0.00014 39.5 5.1 59 218-289 2-60 (356)
4 PF08581 Tup_N: Tup N-terminal 62.5 30 0.00065 28.7 6.3 43 235-277 26-74 (79)
5 PF12214 TPX2_importin: Cell c 50.9 6.3 0.00014 37.1 0.6 18 131-148 66-83 (176)
6 PF11690 DUF3287: Protein of u 42.9 90 0.002 27.7 6.4 35 229-263 33-67 (109)
7 PRK13729 conjugal transfer pil 42.0 98 0.0021 33.5 7.7 55 230-285 72-130 (475)
8 PF07716 bZIP_2: Basic region 34.8 1.3E+02 0.0028 22.4 5.4 26 234-259 21-46 (54)
9 PRK13922 rod shape-determining 32.5 1.4E+02 0.003 28.6 6.4 44 240-283 71-116 (276)
10 KOG3859 Septins (P-loop GTPase 32.1 77 0.0017 33.1 4.9 14 236-249 343-356 (406)
11 PF14193 DUF4315: Domain of un 31.3 1.5E+02 0.0033 24.9 5.8 49 240-288 10-58 (83)
12 TIGR00219 mreC rod shape-deter 28.9 1.7E+02 0.0037 28.9 6.5 41 242-282 70-113 (283)
13 PF13815 Dzip-like_N: Iguana/D 27.6 1.7E+02 0.0036 25.2 5.5 35 241-276 83-117 (118)
14 PF08946 Osmo_CC: Osmosensory 27.5 80 0.0017 24.4 3.1 26 237-262 11-36 (46)
15 PF07946 DUF1682: Protein of u 26.8 1.1E+02 0.0025 30.4 5.0 15 10-24 62-76 (321)
16 KOG2891 Surface glycoprotein [ 26.7 1.2E+02 0.0026 31.5 5.3 26 242-267 397-422 (445)
17 PF04696 Pinin_SDK_memA: pinin 25.6 3E+02 0.0065 24.4 6.9 20 230-249 31-50 (131)
18 PF12329 TMF_DNA_bd: TATA elem 24.9 1.6E+02 0.0034 23.9 4.6 11 265-275 31-41 (74)
19 TIGR01069 mutS2 MutS2 family p 21.2 2.6E+02 0.0056 31.5 6.9 6 269-274 585-590 (771)
20 PF09726 Macoilin: Transmembra 20.6 1.6E+02 0.0034 33.1 5.0 13 265-277 550-562 (697)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.79 E-value=2.2e-19 Score=137.66 Aligned_cols=57 Identities=63% Similarity=0.824 Sum_probs=56.4
Q ss_pred cchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 015906 227 FRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPM 283 (398)
Q Consensus 227 frsdeRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLvfKA~Pm 283 (398)
|+||+||++|+|||.+|+||++++|+++.+++++++++++++|++|||+|||||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999998
No 2
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=93.42 E-value=0.11 Score=48.41 Aligned_cols=126 Identities=25% Similarity=0.273 Sum_probs=74.7
Q ss_pred ccCCCcCCCcchhhhhhccCCCCcchhhhhhcccccCCccccccccccccC--CCCCCCCCCCCCCCCCCCccccccccc
Q 015906 129 RTKHTIPQPFSLATEKRASNGTRPTAAELKSVNKSSNTNSLRHLNSKKQNQ--PPLVPRKPLQPNNKKLPDEEDSCSVAS 206 (398)
Q Consensus 129 ~~~~TvpqPF~LaTeKR~s~~~~~~~~~~~~~~ks~~~~~~~spnt~~~~q--~p~~prK~lq~~nkk~~~e~d~~svts 206 (398)
+.+.|+|+--.|.|--|+..-.......+.......-.+-.|+|--.++-. .+..++|.
T Consensus 2 k~klT~PktP~l~T~~Rar~~~~ks~~e~E~eel~~~~kFKArpln~kIle~~~~~~~~k~------------------- 62 (176)
T PF12214_consen 2 KLKLTVPKTPNLQTSQRARPIRVKSSAELEEEELAKIPKFKARPLNKKILEAPGPPGPKKS------------------- 62 (176)
T ss_pred CcccCCCCCCcchhhhhcCcccccchHHHHHHHHHhhhhhhccccChhhhccCCCCCCCCC-------------------
Confidence 468999999999999999876554443333211110011125554433333 11222221
Q ss_pred cccccccccccccccccCCccchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 015906 207 STAASVRTVKSRIIVAAAPTFRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSF 286 (398)
Q Consensus 207 s~~~s~r~~Ks~stv~s~f~frsdeRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLvfKA~PmPsF 286 (398)
.+...|.+.+|.|++++||..|..= .+ ..+++ ..|+++|. .-
T Consensus 63 --------~~k~~T~p~~F~L~T~~Ra~~r~~~-~~------------------~~~~~----------~~~~srp~-ki 104 (176)
T PF12214_consen 63 --------TPKPPTEPQEFHLETEERAQQRSSS-VS------------------SSEEQ----------FNFHSRPC-KI 104 (176)
T ss_pred --------CCCCCCcccCceeehhhhhhccccc-cc------------------cchhh----------cccccCcc-cc
Confidence 1124568999999999999988541 00 00111 37889998 33
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCC
Q 015906 287 YHDGPPPKVELKKMPPTRAKSPKLGR 312 (398)
Q Consensus 287 y~e~~pPK~elKKiP~TrPkSPKlgR 312 (398)
. ...+-.++++-.++|.|+||+|-.
T Consensus 105 ~-~~~~~~p~~~~~~~t~p~sp~~~~ 129 (176)
T PF12214_consen 105 L-EDVPGVPEKKVLPVTVPKSPAFAL 129 (176)
T ss_pred c-cCCCCCccccccccCCCCChhhhc
Confidence 2 224444666788999999999963
No 3
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=72.29 E-value=6.4 Score=39.49 Aligned_cols=59 Identities=36% Similarity=0.424 Sum_probs=31.2
Q ss_pred ccccccCCccchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 015906 218 RIIVAAAPTFRCTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYHD 289 (398)
Q Consensus 218 ~stv~s~f~frsdeRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLvfKA~PmPsFy~e 289 (398)
+.||+.+|.| +.|-+++++--.+- ...+|.+...++ .+ ++|++.. --|+|+|+|.+-..
T Consensus 2 ~iTVP~PF~m--t~RE~~kk~~~~~~---~~~~e~~~~~~~--~~-~ee~e~~-----k~FrA~pVP~~v~l 60 (356)
T PF10595_consen 2 KITVPKPFQM--TLREEEKKEKASKS---QSDLEQEKKELK--KQ-EEEAECK-----KKFRANPVPAHVYL 60 (356)
T ss_pred CcCCCCCCCc--cHHHHhccchhhhh---HHHHHHHHHHHH--HH-HHHHHhc-----cCCCCCCCCchhcc
Confidence 3578888866 55666665421111 112233332222 22 4455555 48999999986543
No 4
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=62.52 E-value=30 Score=28.73 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=31.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcc
Q 015906 235 KRKEFYSKLEEKHQALEAEKS------QSEARTKEETEAAIKQLRKSLT 277 (398)
Q Consensus 235 KRkEFy~KLEEK~~AkEaEK~------qleaK~KEEeEaEIKqLRKsLv 277 (398)
.+.+|..||--.++.+..-+. +.+.+-|+.=|+||.+||..|-
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888777777764332 2235567888999999999874
No 5
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=50.87 E-value=6.3 Score=37.07 Aligned_cols=18 Identities=50% Similarity=0.630 Sum_probs=16.0
Q ss_pred CCCcCCCcchhhhhhccC
Q 015906 131 KHTIPQPFSLATEKRASN 148 (398)
Q Consensus 131 ~~TvpqPF~LaTeKR~s~ 148 (398)
.+|+||+|.|.|++|+.-
T Consensus 66 ~~T~p~~F~L~T~~Ra~~ 83 (176)
T PF12214_consen 66 PPTEPQEFHLETEERAQQ 83 (176)
T ss_pred CCCcccCceeehhhhhhc
Confidence 568999999999999864
No 6
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=42.93 E-value=90 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 229 CTERAEKRKEFYSKLEEKHQALEAEKSQSEARTKE 263 (398)
Q Consensus 229 sdeRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KE 263 (398)
+++..+....|+.||+.+++++-.|+.+|..|.+.
T Consensus 33 ~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~ 67 (109)
T PF11690_consen 33 PSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQD 67 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999877654
No 7
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.99 E-value=98 Score=33.48 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred hhHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCC
Q 015906 230 TERAEKRKEFYSKLEEKHQALE---AEKSQSEARTKEETEAAIKQLRKSLTF-KASPMPS 285 (398)
Q Consensus 230 deRAeKRkEFy~KLEEK~~AkE---aEK~qleaK~KEEeEaEIKqLRKsLvf-KA~PmPs 285 (398)
.+...+..||..+|+.=.+.++ +++..+|++- ++.|+||++|+..|.- +++|...
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KI-keLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRI-EKLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHhhhcCCCCC
Confidence 4555566666444433322222 2222232222 3678899999998843 5555443
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.75 E-value=1.3e+02 Score=22.44 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 015906 234 EKRKEFYSKLEEKHQALEAEKSQSEA 259 (398)
Q Consensus 234 eKRkEFy~KLEEK~~AkEaEK~qlea 259 (398)
.+++++...|+..+..++.+..+|+.
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888887777743
No 9
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.55 E-value=1.4e+02 Score=28.61 Aligned_cols=44 Identities=32% Similarity=0.349 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCCCC
Q 015906 240 YSKLEEKHQALEAEKSQSEARTK--EETEAAIKQLRKSLTFKASPM 283 (398)
Q Consensus 240 y~KLEEK~~AkEaEK~qleaK~K--EEeEaEIKqLRKsLvfKA~Pm 283 (398)
+..|.+.+..+++|-.+++++.. ++-++|..+||+-|.++...-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~ 116 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLD 116 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 45666667777777766665544 456778899999998886543
No 10
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.10 E-value=77 Score=33.11 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=7.7
Q ss_pred HHhhHHHHHHHHHH
Q 015906 236 RKEFYSKLEEKHQA 249 (398)
Q Consensus 236 RkEFy~KLEEK~~A 249 (398)
|++|-+++.||...
T Consensus 343 rqmFvqrvkekE~e 356 (406)
T KOG3859|consen 343 RQMFVQRVKEKEAE 356 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666555443
No 11
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.34 E-value=1.5e+02 Score=24.91 Aligned_cols=49 Identities=24% Similarity=0.349 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC
Q 015906 240 YSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLTFKASPMPSFYH 288 (398)
Q Consensus 240 y~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLvfKA~PmPsFy~ 288 (398)
+.|.++|+.+..+.-..|+++..|.+-.+|=++=++|..--.-+.-|.+
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~ 58 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLR 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999999999999999888888877765443333555553
No 12
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=28.90 E-value=1.7e+02 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccCCCC
Q 015906 242 KLEEKHQALEAEKSQSEARTK---EETEAAIKQLRKSLTFKASP 282 (398)
Q Consensus 242 KLEEK~~AkEaEK~qleaK~K---EEeEaEIKqLRKsLvfKA~P 282 (398)
.|.+....+.+|..++.++.+ ++-++|..+||+-|.++...
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 344555555555444433322 33678999999999999754
No 13
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.59 E-value=1.7e+02 Score=25.20 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015906 241 SKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSL 276 (398)
Q Consensus 241 ~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsL 276 (398)
..|++++++...+..+++.+.+ +.+++|++|++++
T Consensus 83 ~~l~~~~~~~~~~~~~l~~~~~-~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKLKQKLK-KQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 4667777777766666655443 3456799999875
No 14
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.45 E-value=80 Score=24.44 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 237 KEFYSKLEEKHQALEAEKSQSEARTK 262 (398)
Q Consensus 237 kEFy~KLEEK~~AkEaEK~qleaK~K 262 (398)
+|+|.-+|.|+....++...||+|.+
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~ 36 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQ 36 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHH
Confidence 58899999999999999999987743
No 15
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=26.79 E-value=1.1e+02 Score=30.40 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=7.7
Q ss_pred eccCCCeEEEccCCc
Q 015906 10 MDKEADCVIVYSNGV 24 (398)
Q Consensus 10 mdk~p~~v~v~snG~ 24 (398)
|-.-++.-..|..|-
T Consensus 62 ~~~s~~~f~~yaTGR 76 (321)
T PF07946_consen 62 IKDSPNEFTFYATGR 76 (321)
T ss_pred hhcCcceEEEEEeCC
Confidence 334455555565553
No 16
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.70 E-value=1.2e+02 Score=31.52 Aligned_cols=26 Identities=42% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 242 KLEEKHQALEAEKSQSEARTKEETEA 267 (398)
Q Consensus 242 KLEEK~~AkEaEK~qleaK~KEEeEa 267 (398)
|-+||+++-+....+||.+-++++.+
T Consensus 397 keeeklk~e~qkikeleek~~eeeda 422 (445)
T KOG2891|consen 397 KEEEKLKAEEQKIKELEEKIKEEEDA 422 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777776667777777766655
No 17
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=25.56 E-value=3e+02 Score=24.37 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=16.5
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q 015906 230 TERAEKRKEFYSKLEEKHQA 249 (398)
Q Consensus 230 deRAeKRkEFy~KLEEK~~A 249 (398)
...+.+|++...+|++|...
T Consensus 31 ~~~~~rR~eie~rleek~~~ 50 (131)
T PF04696_consen 31 TEQQKRRAEIEKRLEEKLKE 50 (131)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999988754
No 18
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.86 E-value=1.6e+02 Score=23.87 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 015906 265 TEAAIKQLRKS 275 (398)
Q Consensus 265 eEaEIKqLRKs 275 (398)
...-||+||..
T Consensus 31 ~~~~IKKLr~~ 41 (74)
T PF12329_consen 31 LNNTIKKLRAK 41 (74)
T ss_pred hHHHHHHHHHH
Confidence 44556666653
No 19
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.23 E-value=2.6e+02 Score=31.53 Aligned_cols=6 Identities=33% Similarity=0.905 Sum_probs=2.5
Q ss_pred HHHHHH
Q 015906 269 IKQLRK 274 (398)
Q Consensus 269 IKqLRK 274 (398)
|++||+
T Consensus 585 i~~lk~ 590 (771)
T TIGR01069 585 IRELKE 590 (771)
T ss_pred HHHHHh
Confidence 344443
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.56 E-value=1.6e+02 Score=33.11 Aligned_cols=13 Identities=38% Similarity=0.682 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcc
Q 015906 265 TEAAIKQLRKSLT 277 (398)
Q Consensus 265 eEaEIKqLRKsLv 277 (398)
-|.||++||.+|.
T Consensus 550 lE~E~~~lr~elk 562 (697)
T PF09726_consen 550 LESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 4566777777764
Done!