Query 015906
Match_columns 398
No_of_seqs 122 out of 141
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 04:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vp9_A General transcriptional 70.1 13 0.00045 30.8 6.9 50 232-281 34-89 (92)
2 3qh9_A Liprin-beta-2; coiled-c 40.8 50 0.0017 26.9 5.4 37 243-279 31-80 (81)
3 3nmd_A CGMP dependent protein 32.3 1.3E+02 0.0045 23.9 6.5 35 245-280 33-68 (72)
4 3s9g_A Protein hexim1; cyclin 31.9 93 0.0032 26.4 5.9 36 240-275 39-80 (104)
5 3knd_B Targeting protein for X 28.7 16 0.00054 29.8 0.7 16 131-146 2-17 (81)
6 4e29_A Chimeric WZZB chain len 24.4 1.6E+02 0.0056 27.6 6.9 48 230-277 113-160 (248)
7 1t2k_D Cyclic-AMP-dependent tr 22.6 2.3E+02 0.0078 20.7 6.5 42 234-276 18-59 (61)
8 4efa_G V-type proton ATPase su 21.8 1.9E+02 0.0065 24.4 6.1 30 245-274 24-53 (119)
9 1gu4_A CAAT/enhancer binding p 19.6 3.1E+02 0.011 21.6 6.6 39 235-274 33-71 (78)
10 1jnm_A Proto-oncogene C-JUN; B 17.9 2.3E+02 0.008 20.8 5.2 40 234-274 18-57 (62)
No 1
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=70.08 E-value=13 Score=30.77 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcccCCC
Q 015906 232 RAEKRKEFYSKLEEKHQALEAEKS------QSEARTKEETEAAIKQLRKSLTFKAS 281 (398)
Q Consensus 232 RAeKRkEFy~KLEEK~~AkEaEK~------qleaK~KEEeEaEIKqLRKsLvfKA~ 281 (398)
|..+..+|..|+---++.++.=+. +.+.+-|+.=|+||.+||.+|--+..
T Consensus 34 k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~ 89 (92)
T 3vp9_A 34 RLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDH 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 556667999998777777764332 22345567779999999999865443
No 2
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=40.81 E-value=50 Score=26.95 Aligned_cols=37 Identities=32% Similarity=0.377 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhcccC
Q 015906 243 LEEKHQALEAEKSQSEARTK-------------EETEAAIKQLRKSLTFK 279 (398)
Q Consensus 243 LEEK~~AkEaEK~qleaK~K-------------EEeEaEIKqLRKsLvfK 279 (398)
|--|+..+|.||.|.+.+.+ +..+++|++|.-.|.-.
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 34466777777777775532 44677788877766543
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.27 E-value=1.3e+02 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCC
Q 015906 245 EKHQALEAEKSQSEARTKEETEAAIKQLRKSL-TFKA 280 (398)
Q Consensus 245 EK~~AkEaEK~qleaK~KEEeEaEIKqLRKsL-vfKA 280 (398)
|.+.+++.....++.+. .+.+++|+.||..| .|+.
T Consensus 33 eELr~kd~~I~eLEk~L-~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 33 EELRQRDALIDELELEL-DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 33566665555554443 45677899999988 5554
No 4
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.86 E-value=93 Score=26.38 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 015906 240 YSKLEEKHQALEAEKSQSEART------KEETEAAIKQLRKS 275 (398)
Q Consensus 240 y~KLEEK~~AkEaEK~qleaK~------KEEeEaEIKqLRKs 275 (398)
|..||.++.-+|.+-.+++... -++-+++|.+||.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 6788999888887777766443 25677788888764
No 5
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein transport; 2.15A {Xenopus laevis}
Probab=28.69 E-value=16 Score=29.75 Aligned_cols=16 Identities=50% Similarity=0.978 Sum_probs=14.1
Q ss_pred CCCcCCCcchhhhhhc
Q 015906 131 KHTIPQPFSLATEKRA 146 (398)
Q Consensus 131 ~~TvpqPF~LaTeKR~ 146 (398)
.+|+|.||.|+..+|-
T Consensus 2 g~T~pkPFnls~g~kk 17 (81)
T 3knd_B 2 GHTVPKPFNLSKGKRK 17 (81)
T ss_pred CCccccccccCCCccc
Confidence 4799999999999866
No 6
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=24.40 E-value=1.6e+02 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=41.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015906 230 TERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 277 (398)
Q Consensus 230 deRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLv 277 (398)
..+.+--.+|...++.|+..++.+..+.+...+.+.+..|.+|+..|.
T Consensus 113 ~v~~el~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL~~AL~ 160 (248)
T 4e29_A 113 KVNQELERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIEEALR 160 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788889999999999999999999999999999999988664
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.56 E-value=2.3e+02 Score=20.68 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015906 234 EKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSL 276 (398)
Q Consensus 234 eKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsL 276 (398)
.+++++...||.+...++.+...|+..-. .=+.++.+|+.-|
T Consensus 18 ~rKk~~~~~Le~~~~~L~~~n~~L~~~i~-~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 18 QKRKVWVQSLEKKAEDLSSLNGQLQSEVT-LLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 46677888999999999998888876632 2233466666543
No 8
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=21.77 E-value=1.9e+02 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 245 EKHQALEAEKSQSEARTKEETEAAIKQLRK 274 (398)
Q Consensus 245 EK~~AkEaEK~qleaK~KEEeEaEIKqLRK 274 (398)
++.+..-.+|.+....-+++.+.||.+.|.
T Consensus 24 ~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~ 53 (119)
T 4efa_G 24 EIVSKARKYRQDKLKQAKTDAAKEIDSYKI 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666667777778877775
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=19.61 E-value=3.1e+02 Score=21.63 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 235 KRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRK 274 (398)
Q Consensus 235 KRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRK 274 (398)
+|+.=..-++++...++.|-.+|+++-. .-+.||..||.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~-~L~~E~~~Lr~ 71 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVE-QLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4444455677777777777777776543 33456788886
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=17.86 E-value=2.3e+02 Score=20.75 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 234 EKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRK 274 (398)
Q Consensus 234 eKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRK 274 (398)
.++++....||.+...++.+...|...-.. =+.++.+|+.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~-L~~e~~~Lk~ 57 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANM-LREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456677788899888888888887755321 1223455544
Done!