Query 015906
Match_columns 398
No_of_seqs 122 out of 141
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 04:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8ma1 d.58.60.1 (A:64-330) E 18.7 1.2E+02 0.0088 25.7 6.9 47 231-277 136-182 (267)
2 d3b8oa1 d.58.60.1 (A:55-319) L 17.3 1.2E+02 0.0089 25.9 6.6 48 230-277 132-179 (265)
3 d3b8pa1 d.58.60.1 (A:54-292) C 14.7 1.1E+02 0.0079 25.9 5.4 47 231-277 106-152 (239)
4 d1f5na1 a.114.1.1 (A:284-583) 13.3 1.7E+02 0.012 23.4 6.0 13 239-251 230-242 (300)
5 d1rmda1 g.37.1.1 (A:87-116) V( 13.2 22 0.0016 22.7 0.3 12 65-76 6-17 (30)
6 d1bvsa3 b.40.4.2 (A:1-63) DNA 11.4 47 0.0034 23.0 1.6 23 5-27 5-27 (63)
7 d2awia1 a.35.1.11 (A:2-66) Prg 9.6 54 0.0039 23.5 1.4 14 267-280 5-18 (65)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 8.6 2.8E+02 0.02 19.4 5.2 35 238-273 52-86 (88)
9 d1cuka3 b.40.4.2 (A:1-64) DNA 8.5 63 0.0046 22.4 1.4 23 5-27 5-27 (64)
10 d1ixra2 b.40.4.2 (A:1-62) DNA 7.5 91 0.0067 21.4 1.9 23 5-27 5-27 (62)
No 1
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=18.74 E-value=1.2e+02 Score=25.72 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=39.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015906 231 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 277 (398)
Q Consensus 231 eRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLv 277 (398)
.+.+--.+|...++.|++.++.+....+.+.+.+.+-+|.+|...|.
T Consensus 136 v~~~l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 136 VVKESIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555778888999999999999999999999999999999987653
No 2
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=17.34 E-value=1.2e+02 Score=25.88 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=39.6
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015906 230 TERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 277 (398)
Q Consensus 230 deRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLv 277 (398)
-.+.+--.+|...++.++..++.+...+++..+...+-+|.+|...|.
T Consensus 132 ~~~~~l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 132 RAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778889999999999999999999999999999999997553
No 3
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=14.65 E-value=1.1e+02 Score=25.87 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=39.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015906 231 ERAEKRKEFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLRKSLT 277 (398)
Q Consensus 231 eRAeKRkEFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLRKsLv 277 (398)
.+.+--.+|...++.+...++++...+++..+...+.+|.+|...|.
T Consensus 106 ~~~~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~ 152 (239)
T d3b8pa1 106 VAKELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALR 152 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888899999999999999999999999999988664
No 4
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.27 E-value=1.7e+02 Score=23.42 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 015906 239 FYSKLEEKHQALE 251 (398)
Q Consensus 239 Fy~KLEEK~~AkE 251 (398)
+...+++.....+
T Consensus 230 ~~~~~e~~~~~~e 242 (300)
T d1f5na1 230 NEQMMEQKERSYQ 242 (300)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333343333333
No 5
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.24 E-value=22 Score=22.69 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=10.4
Q ss_pred hhcccccccchh
Q 015906 65 EVKECTSETSIE 76 (398)
Q Consensus 65 evkect~e~sv~ 76 (398)
-+|||.+|+|++
T Consensus 6 p~keC~eEvsle 17 (30)
T d1rmda1 6 PAQDCNEEVSLE 17 (30)
T ss_dssp CSTTCCCEEEHH
T ss_pred ccccccchhchh
Confidence 378999999996
No 6
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=11.43 E-value=47 Score=22.99 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.2
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015906 5 VTDVCMDKEADCVIVYSNGVSHD 27 (398)
Q Consensus 5 ~tdi~mdk~p~~v~v~snG~s~d 27 (398)
+++...+++||.||+.-||+--.
T Consensus 5 i~G~i~~~~~~~ivi~v~GvGY~ 27 (63)
T d1bvsa3 5 VRGEVLEVALDHAVIEAAGIGYR 27 (63)
T ss_dssp ECEEEEEECSSCEEEEETTEEEC
T ss_pred EEEEEEEECCCEEEEEECCEEEE
Confidence 67888999999999999998765
No 7
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=9.64 E-value=54 Score=23.53 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.5
Q ss_pred HHHHHHHHhcccCC
Q 015906 267 AAIKQLRKSLTFKA 280 (398)
Q Consensus 267 aEIKqLRKsLvfKA 280 (398)
.-|||+||+|++..
T Consensus 5 ~~lkqir~elnyhq 18 (65)
T d2awia1 5 SVLKQIRQELNYHQ 18 (65)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred hHHHHHHHHhhhhH
Confidence 35899999999864
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.63 E-value=2.8e+02 Score=19.39 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015906 238 EFYSKLEEKHQALEAEKSQSEARTKEETEAAIKQLR 273 (398)
Q Consensus 238 EFy~KLEEK~~AkEaEK~qleaK~KEEeEaEIKqLR 273 (398)
+|...|++....++.++.++..+. +.-..+|.+|+
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~-~~L~~~l~~L~ 86 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRR-EQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 677778777777777666654332 22344455553
No 9
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.46 E-value=63 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=19.7
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015906 5 VTDVCMDKEADCVIVYSNGVSHD 27 (398)
Q Consensus 5 ~tdi~mdk~p~~v~v~snG~s~d 27 (398)
+.+...++.+|.||+.-||+--.
T Consensus 5 l~G~l~~~~~~~ivi~v~GvGY~ 27 (64)
T d1cuka3 5 LRGIIIEKQPPLVLIEVGGVGYE 27 (64)
T ss_dssp EEEEEEEEETTEEEEEETTEEEE
T ss_pred EEEEEEEEcCCEEEEEECCEEEE
Confidence 66788999999999999998654
No 10
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.51 E-value=91 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.6
Q ss_pred ccceeeccCCCeEEEccCCcccC
Q 015906 5 VTDVCMDKEADCVIVYSNGVSHD 27 (398)
Q Consensus 5 ~tdi~mdk~p~~v~v~snG~s~d 27 (398)
+.+....+.+|.+||.-||+--.
T Consensus 5 i~G~i~~~~~~~ivi~~~GvGY~ 27 (62)
T d1ixra2 5 LRGLVLKKEAGGFVLLAGGVGFF 27 (62)
T ss_dssp EEEEEEEECSSEEEEECSSEEEE
T ss_pred EEEEEEEEcCCEEEEEECCEEEE
Confidence 56778899999999999998654
Done!