BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015907
         (398 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 33.5 bits (75), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
           ++ Y++ L + P+ + A         + GDY  A+   Q   +  P   + +  LG   Y
Sbjct: 21  IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80

Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284
           +  DY+  A  Y    +     + E    L NA       DEA+++ 
Sbjct: 81  KQGDYD-EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 32.7 bits (73), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
           ++ Y++ L + P ++ A         + GDY  A+   Q   +  P++ + +  LG   Y
Sbjct: 29  IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88

Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270
           +  DY+ +   Y+ +  +  + N E  + L NA
Sbjct: 89  KQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 120



 Score = 31.6 bits (70), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265
           GDY  A+   Q   +  P++ + +  LG   Y+  DY+ +   Y+ +  +  + N E   
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWY 81

Query: 266 GLTNALLAAKKPDEAVQF 283
            L NA       DEA+++
Sbjct: 82  NLGNAYYKQGDYDEAIEY 99


>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
 pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
           Peptide-Ligand (Hsp90 Peptide)
          Length = 125

 Score = 32.0 bits (71), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234
           Q  ++ Y++ L + P +++A         + GDY +A+   Q   +  P++   +   G 
Sbjct: 26  QKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGN 85

Query: 235 VKYELKDYEGSAAAYR 250
             Y+  DY+ +   Y+
Sbjct: 86  AYYKQGDYQKAIEDYQ 101


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 31.6 bits (70), Expect = 0.75,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237
           ++ Y++ L + P ++ A         + GDY  A+   Q   +  P++ + +  LG   Y
Sbjct: 29  IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYY 88

Query: 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270
           +  DY+ +   Y+ +  +  + N E  + L NA
Sbjct: 89  KQGDYDEAIEYYQKALELYPN-NAEAKQNLGNA 120



 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265
           GDY  A+   Q   +  P++ + +  LG   Y+  DY+ +   Y+ +  +  + N E   
Sbjct: 23  GDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWY 81

Query: 266 GLTNALLAAKKPDEAVQF 283
            L NA       DEA+++
Sbjct: 82  NLGNAYYKQGDYDEAIEY 99



 Score = 28.1 bits (61), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
           LG AY   G   +A+  Y + +  YPN+   +   G    + G   +A   + +A    P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74

Query: 386 EKVKA 390
              +A
Sbjct: 75  NNAEA 79



 Score = 28.1 bits (61), Expect = 8.5,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385
           LG AY   G   +A+  Y + +  YPN+   +   G    + G   +A   + +A    P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 108

Query: 386 EKVKA 390
              +A
Sbjct: 109 NNAEA 113


>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
           With A Peptide Substrate
 pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
           Human O- Glcnac Transferase
 pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
           Glycopeptide
 pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
           Udp-5sglcnac And Substrate Peptide
 pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
           With Udp And A Glycopeptide
 pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac And A Peptide Substrate
 pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
           And A Thioglycopeptide
 pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-Glcnac
 pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
 pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
           Udp-5sglcnac
          Length = 723

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-------YTRAVSLLQDLAKE 221
           +++  LQ  L  Y+E + ISP  + A      TL E+ D       YTRA+ +       
Sbjct: 54  QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 222 KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259
            P+  D    L  +  +  +   + A+YR +  +  D 
Sbjct: 107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144


>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
          Length = 258

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 55/189 (29%)

Query: 190 KDSTALEGAAVTLAELGDYTRAVSLLQDL---AKEKPSDPDV-----------FRLLGEV 235
           KD T L   A    E G+Y  A+S L D     +E  +D  V           +  LG++
Sbjct: 36  KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95

Query: 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295
           K  ++ Y+ S   +R + +++K         L NA    KK  EA  ++           
Sbjct: 96  KKTIEYYQKSLTEHRTADILTK---------LRNAEKELKKA-EAEAYV----------- 134

Query: 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355
                             P+K +  ++E   GK Y       +AV  Y  +I   P D R
Sbjct: 135 -----------------NPEKAEEARLE---GKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

Query: 356 GYLAKGIIL 364
           GY  +   L
Sbjct: 175 GYSNRAAAL 183


>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
          Length = 111

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQD 217
           Y++ ++  P++       A+ L +LG+YT+A+ + Q 
Sbjct: 27  YDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63


>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
           Heme Lyase And Formate-Dependent Nitrite Reductase In
           Escherichia Coli O157:h7
 pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
           Heme Lyase And Formate-Dependent Nitrite Reductase In
           Escherichia Coli O157:h7
          Length = 177

 Score = 28.9 bits (63), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 215 LQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250
           LQD  +  P + + + LLGE      DY  S  AYR
Sbjct: 33  LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68


>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
           Fumigatus
          Length = 164

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 31/69 (44%)

Query: 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240
           Y + LSI+P +   L   A   +  G + +A    +      P     +  LG  ++++ 
Sbjct: 34  YTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93

Query: 241 DYEGSAAAY 249
           DY+G+  AY
Sbjct: 94  DYKGAKEAY 102


>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha.
 pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
           Reveals Structural Similarities To Importin Alpha
          Length = 388

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 16/200 (8%)

Query: 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD--INFEV 263
           GD+  A      L +++P +  V  LL  + ++ +  + SA     ST+  K   +  E 
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSA---HFSTLAIKQNPLLAEA 69

Query: 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD---DLSVKDGRSGDKKETEPQKVDPI 320
              L N      +  EA++    +  RL     D   +L+     +GD +      V  +
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHAL-RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128

Query: 321 Q-------VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA 373
           Q       V   LG      GR+ +A A Y + I + PN    +   G +    G++  A
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188

Query: 374 ERMFIQARFFAPEKVKALVD 393
              F +A    P  + A ++
Sbjct: 189 IHHFEKAVTLDPNFLDAYIN 208


>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
           In Thermus Thermophilus Hb27
 pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
           In Thermus Thermophilus Hb27
          Length = 217

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 200 VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239
           V L  LG Y  A++L +   KE P DP+    L   + +L
Sbjct: 13  VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKL 52


>pdb|2ZZV|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Calcium And Lactate
 pdb|2ZZV|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Calcium And Lactate
 pdb|2ZZW|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Zinc And Lactate
 pdb|2ZZW|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Zinc And Lactate
 pdb|2ZZX|A Chain A, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|B Chain B, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|C Chain C, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
 pdb|2ZZX|D Chain D, Crystal Structure Of A Periplasmic Substrate Binding
           Protein In Complex With Lactate
          Length = 361

 Score = 28.1 bits (61), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 108 GPIDYDAPIETEKKTI-------GLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAG 160
           GP+ +D  I   KK I       G+  ++  G+   +F    A    LP G V P  E G
Sbjct: 151 GPVQHDLNIIHSKKPIRRFEDFKGVKLRVPGGMIAEVFAAAGASTVLLPGGEVYPALERG 210

Query: 161 VVN 163
           V++
Sbjct: 211 VID 213


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,206,356
Number of Sequences: 62578
Number of extensions: 411990
Number of successful extensions: 889
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 60
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)