Query 015907
Match_columns 398
No_of_seqs 761 out of 3268
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 02:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.5E-36 5.4E-41 269.6 19.2 289 96-395 196-497 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.6E-35 9.9E-40 261.5 17.0 299 96-396 128-464 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 2.7E-28 5.9E-33 237.8 36.0 258 94-390 137-503 (615)
4 TIGR00990 3a0801s09 mitochondr 100.0 5.7E-27 1.2E-31 228.5 31.8 261 98-389 308-577 (615)
5 PRK15174 Vi polysaccharide exp 100.0 1.1E-25 2.3E-30 219.2 32.3 289 93-392 51-356 (656)
6 KOG1126 DNA-binding cell divis 99.9 1.2E-25 2.6E-30 203.9 24.0 266 96-390 331-627 (638)
7 PRK15174 Vi polysaccharide exp 99.9 1.3E-24 2.8E-29 211.6 32.3 283 96-390 88-388 (656)
8 PRK11447 cellulose synthase su 99.9 1.1E-24 2.3E-29 225.9 31.6 288 95-393 280-676 (1157)
9 PRK11788 tetratricopeptide rep 99.9 2.1E-23 4.5E-28 193.4 31.6 264 93-391 44-319 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 9.1E-24 2E-28 216.2 31.8 284 98-394 581-877 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 1.5E-23 3.2E-28 214.7 32.6 284 99-393 514-809 (899)
12 KOG1173 Anaphase-promoting com 99.9 1.2E-23 2.5E-28 187.3 25.0 270 91-388 251-523 (611)
13 KOG1126 DNA-binding cell divis 99.9 2.5E-24 5.4E-29 195.4 20.4 226 131-393 335-596 (638)
14 PRK11447 cellulose synthase su 99.9 9.7E-23 2.1E-27 211.3 32.4 257 94-388 361-705 (1157)
15 PRK09782 bacteriophage N4 rece 99.9 2.5E-22 5.5E-27 200.2 31.6 248 103-391 460-714 (987)
16 KOG1155 Anaphase-promoting com 99.9 3.8E-22 8.2E-27 173.7 25.5 204 161-390 333-543 (559)
17 PRK11189 lipoprotein NlpI; Pro 99.9 6.1E-22 1.3E-26 174.9 27.2 229 131-394 42-277 (296)
18 PRK09782 bacteriophage N4 rece 99.9 8.7E-22 1.9E-26 196.4 29.2 252 98-388 490-745 (987)
19 KOG0624 dsRNA-activated protei 99.9 9.3E-22 2E-26 165.3 23.3 303 80-393 34-380 (504)
20 KOG0547 Translocase of outer m 99.9 1.2E-21 2.5E-26 171.8 24.8 229 129-386 339-569 (606)
21 KOG0547 Translocase of outer m 99.9 4.2E-21 9.2E-26 168.3 27.9 210 159-394 327-543 (606)
22 KOG1125 TPR repeat-containing 99.9 1.3E-22 2.8E-27 181.5 16.9 235 116-386 284-530 (579)
23 PRK12370 invasion protein regu 99.9 5.5E-21 1.2E-25 183.4 29.1 216 131-382 277-501 (553)
24 PRK11788 tetratricopeptide rep 99.9 1.3E-20 2.8E-25 174.8 29.6 226 129-389 48-284 (389)
25 PRK10049 pgaA outer membrane p 99.9 1.2E-20 2.7E-25 187.6 30.5 289 94-394 59-433 (765)
26 PF13429 TPR_15: Tetratricopep 99.9 2E-22 4.3E-27 177.7 14.6 256 90-383 14-277 (280)
27 KOG1155 Anaphase-promoting com 99.9 1.4E-20 3.1E-25 164.0 24.6 203 155-383 259-495 (559)
28 PRK12370 invasion protein regu 99.9 1.6E-20 3.4E-25 180.3 27.7 247 98-385 275-537 (553)
29 KOG1129 TPR repeat-containing 99.9 8.9E-21 1.9E-25 158.4 22.2 241 121-394 225-469 (478)
30 TIGR02521 type_IV_pilW type IV 99.9 4.8E-20 1E-24 158.0 27.6 205 155-385 28-234 (234)
31 KOG2076 RNA polymerase III tra 99.9 2E-19 4.4E-24 168.5 30.5 307 80-396 135-491 (895)
32 PRK10049 pgaA outer membrane p 99.9 9.2E-20 2E-24 181.4 28.9 290 95-395 26-400 (765)
33 PRK11189 lipoprotein NlpI; Pro 99.9 2E-19 4.4E-24 158.9 25.1 235 101-369 43-286 (296)
34 KOG2002 TPR-containing nuclear 99.9 2.9E-19 6.3E-24 168.6 27.1 306 88-394 168-536 (1018)
35 COG3063 PilF Tfp pilus assembl 99.9 7.1E-19 1.5E-23 140.6 24.7 207 158-390 35-243 (250)
36 COG3063 PilF Tfp pilus assembl 99.8 7.7E-19 1.7E-23 140.4 21.2 174 192-389 35-208 (250)
37 KOG2003 TPR repeat-containing 99.8 8.3E-19 1.8E-23 152.8 22.5 265 91-392 426-698 (840)
38 KOG1129 TPR repeat-containing 99.8 1.2E-18 2.5E-23 145.9 22.0 207 162-395 227-436 (478)
39 KOG2002 TPR-containing nuclear 99.8 2.5E-18 5.5E-23 162.3 26.3 229 131-391 146-379 (1018)
40 TIGR02521 type_IV_pilW type IV 99.8 6.9E-18 1.5E-22 144.6 24.7 178 191-392 30-207 (234)
41 PLN02789 farnesyltranstransfer 99.8 3.5E-17 7.5E-22 144.3 28.8 245 99-392 35-311 (320)
42 PF13429 TPR_15: Tetratricopep 99.8 1.4E-19 3E-24 159.6 13.7 227 129-394 21-254 (280)
43 KOG1173 Anaphase-promoting com 99.8 2.2E-18 4.8E-23 154.0 20.0 224 108-366 302-535 (611)
44 TIGR00540 hemY_coli hemY prote 99.8 4.5E-17 9.7E-22 151.0 29.6 277 95-383 95-399 (409)
45 PLN02789 farnesyltranstransfer 99.8 2.9E-17 6.2E-22 144.8 23.7 198 168-391 47-258 (320)
46 KOG1174 Anaphase-promoting com 99.8 8.6E-17 1.9E-21 138.7 24.4 271 109-393 223-510 (564)
47 KOG0495 HAT repeat protein [RN 99.8 2.1E-16 4.5E-21 143.6 27.3 284 101-396 533-859 (913)
48 PRK10747 putative protoheme IX 99.8 5.8E-16 1.2E-20 142.8 30.9 276 96-384 96-391 (398)
49 KOG0548 Molecular co-chaperone 99.8 5.7E-17 1.2E-21 144.5 23.1 98 95-202 13-114 (539)
50 KOG1125 TPR repeat-containing 99.8 1.5E-17 3.2E-22 149.4 19.2 250 90-375 291-563 (579)
51 KOG2003 TPR repeat-containing 99.8 9.9E-17 2.1E-21 140.0 22.9 234 98-369 470-709 (840)
52 TIGR03302 OM_YfiO outer membra 99.8 2.4E-16 5.1E-21 135.5 24.9 191 153-386 28-235 (235)
53 KOG0495 HAT repeat protein [RN 99.8 3E-16 6.5E-21 142.6 25.9 285 98-393 598-890 (913)
54 KOG0624 dsRNA-activated protei 99.8 7.9E-17 1.7E-21 135.8 20.6 257 129-395 51-348 (504)
55 KOG0550 Molecular chaperone (D 99.8 3.1E-17 6.8E-22 141.5 17.5 261 94-386 59-353 (486)
56 KOG1840 Kinesin light chain [C 99.8 1.8E-16 4E-21 145.8 23.7 234 129-382 212-478 (508)
57 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.3E-20 150.3 29.7 284 90-385 40-398 (822)
58 TIGR00540 hemY_coli hemY prote 99.8 9.4E-16 2E-20 142.2 27.7 219 95-348 129-398 (409)
59 COG2956 Predicted N-acetylgluc 99.8 8.6E-16 1.9E-20 128.7 24.4 182 99-287 50-240 (389)
60 COG2956 Predicted N-acetylgluc 99.7 2E-15 4.3E-20 126.5 24.9 231 120-387 38-282 (389)
61 KOG4162 Predicted calmodulin-b 99.7 1.2E-15 2.7E-20 141.2 25.5 252 101-389 461-789 (799)
62 PRK10747 putative protoheme IX 99.7 4.7E-15 1E-19 136.8 28.9 224 87-350 121-391 (398)
63 PRK15359 type III secretion sy 99.7 2.6E-16 5.6E-21 123.3 15.5 126 135-273 13-138 (144)
64 KOG4162 Predicted calmodulin-b 99.7 3.6E-15 7.7E-20 138.2 23.9 288 102-394 375-760 (799)
65 PRK14574 hmsH outer membrane p 99.7 7.9E-15 1.7E-19 144.2 25.6 197 155-379 31-228 (822)
66 KOG1840 Kinesin light chain [C 99.7 3.2E-15 7E-20 137.6 21.3 218 154-390 195-449 (508)
67 KOG1174 Anaphase-promoting com 99.7 1E-14 2.2E-19 126.1 21.5 233 96-366 244-517 (564)
68 PLN03218 maturation of RBCL 1; 99.7 3.1E-13 6.6E-18 136.7 32.8 276 95-382 448-747 (1060)
69 cd05804 StaR_like StaR_like; a 99.7 3E-14 6.4E-19 130.5 23.6 203 154-385 2-217 (355)
70 KOG1156 N-terminal acetyltrans 99.7 8.9E-14 1.9E-18 126.8 25.8 262 90-386 13-286 (700)
71 PLN03218 maturation of RBCL 1; 99.7 5E-13 1.1E-17 135.2 33.8 277 96-383 484-783 (1060)
72 KOG2076 RNA polymerase III tra 99.7 5.2E-14 1.1E-18 132.7 24.7 251 97-381 186-510 (895)
73 PLN03081 pentatricopeptide (PP 99.7 4.4E-14 9.6E-19 140.3 25.5 274 96-383 271-557 (697)
74 KOG1156 N-terminal acetyltrans 99.6 3.4E-14 7.3E-19 129.4 21.0 237 131-394 23-259 (700)
75 PRK15359 type III secretion sy 99.6 8.6E-15 1.9E-19 114.7 15.1 106 178-287 13-118 (144)
76 PLN03081 pentatricopeptide (PP 99.6 2.3E-13 5E-18 135.2 28.0 275 94-387 97-426 (697)
77 PRK10370 formate-dependent nit 99.6 1.8E-14 3.9E-19 119.0 16.7 121 171-292 52-175 (198)
78 cd05804 StaR_like StaR_like; a 99.6 9.2E-13 2E-17 120.6 29.7 262 94-384 53-337 (355)
79 COG5010 TadD Flp pilus assembl 99.6 2.3E-13 4.9E-18 111.7 21.3 182 172-380 47-228 (257)
80 TIGR03302 OM_YfiO outer membra 99.6 5.8E-14 1.3E-18 120.6 19.0 152 129-289 46-231 (235)
81 KOG0550 Molecular chaperone (D 99.6 1.6E-14 3.5E-19 125.0 14.9 239 131-394 65-327 (486)
82 KOG3060 Uncharacterized conser 99.6 4.4E-13 9.6E-18 109.0 22.1 183 155-365 49-236 (289)
83 KOG0548 Molecular co-chaperone 99.6 9E-14 1.9E-18 124.3 19.8 206 160-393 226-465 (539)
84 KOG3060 Uncharacterized conser 99.6 6.7E-13 1.5E-17 108.0 22.7 184 187-396 47-233 (289)
85 COG5010 TadD Flp pilus assembl 99.6 2.1E-13 4.6E-18 111.9 19.6 166 155-347 64-229 (257)
86 PRK10370 formate-dependent nit 99.6 7.5E-14 1.6E-18 115.3 17.0 119 131-258 55-176 (198)
87 PRK15179 Vi polysaccharide bio 99.6 2E-13 4.4E-18 132.0 22.2 148 183-356 77-224 (694)
88 PRK14720 transcript cleavage f 99.6 2.1E-13 4.6E-18 132.8 22.0 215 153-383 26-283 (906)
89 PLN03077 Protein ECB2; Provisi 99.6 2.8E-12 6.1E-17 130.5 28.3 189 162-383 528-720 (857)
90 TIGR02552 LcrH_SycD type III s 99.6 2E-13 4.4E-18 106.4 15.5 116 137-262 5-120 (135)
91 KOG1127 TPR repeat-containing 99.6 2E-13 4.3E-18 129.8 17.9 182 97-289 471-658 (1238)
92 KOG0553 TPR repeat-containing 99.6 1E-13 2.2E-18 115.9 13.9 120 158-278 81-200 (304)
93 PRK15179 Vi polysaccharide bio 99.6 4.3E-13 9.2E-18 129.8 20.2 155 94-258 62-220 (694)
94 TIGR02552 LcrH_SycD type III s 99.5 2.7E-13 5.9E-18 105.7 14.5 113 179-292 4-116 (135)
95 PLN03077 Protein ECB2; Provisi 99.5 4.9E-12 1.1E-16 128.8 27.1 278 96-393 366-696 (857)
96 PF12569 NARP1: NMDA receptor- 99.5 9.3E-12 2E-16 116.3 25.6 227 158-388 4-262 (517)
97 KOG1127 TPR repeat-containing 99.5 6.7E-13 1.5E-17 126.3 18.0 215 131-382 474-699 (1238)
98 PRK14720 transcript cleavage f 99.5 1.6E-12 3.4E-17 126.9 20.2 113 131-255 47-178 (906)
99 COG4783 Putative Zn-dependent 99.5 7.4E-12 1.6E-16 111.3 21.6 151 189-384 303-455 (484)
100 PRK15363 pathogenicity island 99.5 9.1E-13 2E-17 101.2 13.7 105 186-291 28-133 (157)
101 PRK15363 pathogenicity island 99.5 1.4E-12 3E-17 100.2 14.5 103 155-257 32-134 (157)
102 KOG1128 Uncharacterized conser 99.5 3E-12 6.5E-17 118.6 16.8 206 129-384 411-617 (777)
103 COG3071 HemY Uncharacterized e 99.4 2.7E-10 5.8E-15 98.9 26.6 273 96-383 96-390 (400)
104 PLN03088 SGT1, suppressor of 99.4 5.1E-12 1.1E-16 114.4 15.9 113 161-274 5-117 (356)
105 PF12569 NARP1: NMDA receptor- 99.4 1.1E-10 2.4E-15 109.2 25.1 130 227-384 195-335 (517)
106 PRK10866 outer membrane biogen 99.4 2.9E-10 6.3E-15 97.0 24.4 182 156-380 30-238 (243)
107 KOG2376 Signal recognition par 99.4 4.9E-11 1.1E-15 108.1 20.4 223 160-388 14-258 (652)
108 PF13525 YfiO: Outer membrane 99.4 2.5E-10 5.4E-15 95.1 23.0 176 156-374 3-198 (203)
109 COG4783 Putative Zn-dependent 99.4 3E-10 6.6E-15 101.2 24.1 154 155-351 303-456 (484)
110 KOG0553 TPR repeat-containing 99.4 3.5E-12 7.7E-17 106.8 11.2 106 262-394 82-189 (304)
111 KOG1130 Predicted G-alpha GTPa 99.4 3.6E-12 7.7E-17 110.6 9.9 60 325-384 280-345 (639)
112 KOG2376 Signal recognition par 99.4 4.2E-10 9E-15 102.2 23.3 243 86-355 14-259 (652)
113 KOG1128 Uncharacterized conser 99.3 6.4E-11 1.4E-15 109.9 17.3 199 154-393 394-592 (777)
114 KOG1130 Predicted G-alpha GTPa 99.3 1.5E-11 3.3E-16 106.8 11.5 49 323-371 318-372 (639)
115 TIGR02795 tol_pal_ybgF tol-pal 99.3 9.2E-11 2E-15 89.1 13.9 105 159-264 3-113 (119)
116 COG3071 HemY Uncharacterized e 99.3 3.7E-09 8E-14 92.0 24.4 225 163-389 89-363 (400)
117 KOG3785 Uncharacterized conser 99.3 5.1E-10 1.1E-14 95.7 18.5 191 168-392 32-223 (557)
118 COG4235 Cytochrome c biogenesi 99.3 2.2E-10 4.8E-15 96.8 15.5 120 173-293 137-259 (287)
119 cd00189 TPR Tetratricopeptide 99.3 1.3E-10 2.8E-15 84.1 12.2 98 160-257 2-99 (100)
120 PRK02603 photosystem I assembl 99.3 2.6E-10 5.5E-15 92.7 14.8 104 155-258 32-152 (172)
121 PRK02603 photosystem I assembl 99.3 4.1E-10 8.8E-15 91.5 15.6 98 189-287 32-132 (172)
122 PF13414 TPR_11: TPR repeat; P 99.2 6E-11 1.3E-15 80.4 8.3 66 192-257 3-69 (69)
123 PF04733 Coatomer_E: Coatomer 99.2 1.7E-10 3.7E-15 100.8 13.1 199 159-390 67-272 (290)
124 PLN03088 SGT1, suppressor of 99.2 3.2E-10 6.8E-15 102.8 15.3 95 195-290 5-99 (356)
125 CHL00033 ycf3 photosystem I as 99.2 3.2E-10 6.9E-15 91.8 13.6 117 173-290 14-142 (168)
126 PF13414 TPR_11: TPR repeat; P 99.2 6.4E-11 1.4E-15 80.3 8.0 67 157-223 2-69 (69)
127 KOG3785 Uncharacterized conser 99.2 3.2E-09 7E-14 90.9 19.6 268 97-380 35-342 (557)
128 KOG4340 Uncharacterized conser 99.2 1.1E-09 2.4E-14 91.6 16.2 188 168-383 20-207 (459)
129 PF04733 Coatomer_E: Coatomer 99.2 1.3E-10 2.7E-15 101.6 11.1 203 157-395 34-242 (290)
130 COG4235 Cytochrome c biogenesi 99.2 1E-09 2.2E-14 92.9 15.4 104 155-258 153-259 (287)
131 PF14938 SNAP: Soluble NSF att 99.2 5.9E-10 1.3E-14 98.0 14.8 182 173-388 30-230 (282)
132 PF14938 SNAP: Soluble NSF att 99.2 3.8E-10 8.1E-15 99.2 13.2 205 162-385 39-268 (282)
133 PF09976 TPR_21: Tetratricopep 99.2 2E-09 4.3E-14 84.7 16.0 122 164-287 17-144 (145)
134 KOG1915 Cell cycle control pro 99.2 2.8E-08 6.2E-13 88.3 24.4 233 129-395 86-329 (677)
135 PF12895 Apc3: Anaphase-promot 99.2 6.9E-11 1.5E-15 83.5 6.8 81 171-252 2-84 (84)
136 PRK04841 transcriptional regul 99.2 1.6E-08 3.4E-13 104.4 26.3 255 129-387 465-764 (903)
137 COG4785 NlpI Lipoprotein NlpI, 99.2 4.3E-09 9.3E-14 84.1 16.8 196 157-384 64-267 (297)
138 CHL00033 ycf3 photosystem I as 99.2 1.6E-09 3.5E-14 87.6 15.0 103 156-258 33-152 (168)
139 TIGR02795 tol_pal_ybgF tol-pal 99.2 1.5E-09 3.2E-14 82.4 13.8 101 192-292 2-107 (119)
140 PF13432 TPR_16: Tetratricopep 99.2 1.6E-10 3.6E-15 77.2 7.4 64 325-388 2-65 (65)
141 KOG1915 Cell cycle control pro 99.2 2.8E-08 6E-13 88.4 22.9 204 155-387 70-277 (677)
142 KOG4340 Uncharacterized conser 99.1 5.8E-09 1.2E-13 87.4 17.6 287 91-391 17-313 (459)
143 PF13432 TPR_16: Tetratricopep 99.1 2.7E-10 5.9E-15 76.1 8.1 63 163-225 2-64 (65)
144 PRK15331 chaperone protein Sic 99.1 1.5E-09 3.3E-14 83.9 12.8 103 155-258 34-136 (165)
145 PRK11906 transcriptional regul 99.1 5.6E-09 1.2E-13 93.8 18.3 146 131-286 274-432 (458)
146 cd00189 TPR Tetratricopeptide 99.1 1E-09 2.3E-14 79.2 11.5 95 194-289 2-96 (100)
147 PRK10866 outer membrane biogen 99.1 2.7E-08 5.9E-13 84.9 21.4 127 160-286 71-237 (243)
148 PRK10803 tol-pal system protei 99.1 3.6E-09 7.9E-14 90.8 16.0 106 157-263 141-253 (263)
149 COG0457 NrfG FOG: TPR repeat [ 99.1 1.9E-07 4.1E-12 79.6 27.0 223 131-386 39-268 (291)
150 PF09976 TPR_21: Tetratricopep 99.1 8.6E-09 1.9E-13 81.1 16.7 118 204-347 23-145 (145)
151 PF12895 Apc3: Anaphase-promot 99.1 2.9E-10 6.2E-15 80.3 7.0 82 204-287 1-84 (84)
152 PRK10153 DNA-binding transcrip 99.1 7.3E-09 1.6E-13 97.8 18.5 142 221-389 332-488 (517)
153 PRK11906 transcriptional regul 99.1 1.5E-08 3.3E-13 91.1 18.9 128 161-289 258-400 (458)
154 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 1.4E-08 3.1E-13 91.7 18.5 120 164-287 175-294 (395)
155 KOG0543 FKBP-type peptidyl-pro 99.1 5.8E-09 1.2E-13 91.5 15.2 132 160-292 210-357 (397)
156 PRK10153 DNA-binding transcrip 99.0 2.1E-08 4.6E-13 94.7 19.1 120 208-355 358-488 (517)
157 PRK15331 chaperone protein Sic 99.0 3E-09 6.5E-14 82.3 10.7 105 184-289 29-133 (165)
158 PRK04841 transcriptional regul 99.0 1.9E-07 4.2E-12 96.3 27.4 272 112-384 406-721 (903)
159 KOG0543 FKBP-type peptidyl-pro 99.0 4.1E-09 8.9E-14 92.4 12.1 121 265-395 212-332 (397)
160 PF13525 YfiO: Outer membrane 99.0 4.1E-08 8.9E-13 81.8 17.5 145 131-281 21-198 (203)
161 KOG4648 Uncharacterized conser 99.0 9E-10 2E-14 93.8 7.0 225 161-390 100-337 (536)
162 COG4785 NlpI Lipoprotein NlpI, 99.0 3.8E-08 8.2E-13 78.8 15.5 193 125-351 71-268 (297)
163 KOG2047 mRNA splicing factor [ 99.0 3.6E-07 7.8E-12 84.4 23.4 226 158-392 248-551 (835)
164 KOG1941 Acetylcholine receptor 99.0 6.1E-08 1.3E-12 83.4 17.1 274 87-385 9-322 (518)
165 KOG1070 rRNA processing protei 99.0 2.9E-07 6.2E-12 91.8 23.7 224 136-393 1445-1675(1710)
166 COG4105 ComL DNA uptake lipopr 99.0 1.1E-06 2.3E-11 73.2 23.4 189 156-387 32-237 (254)
167 PRK10803 tol-pal system protei 99.0 2.7E-08 5.8E-13 85.5 14.7 108 261-390 142-253 (263)
168 KOG3081 Vesicle coat complex C 99.0 2.6E-07 5.7E-12 76.5 19.5 129 233-394 115-247 (299)
169 PF14559 TPR_19: Tetratricopep 98.9 3.4E-09 7.4E-14 71.5 7.2 66 169-234 2-67 (68)
170 KOG2053 Mitochondrial inherita 98.9 2E-06 4.4E-11 82.4 27.1 244 84-391 9-263 (932)
171 KOG2047 mRNA splicing factor [ 98.9 1.3E-06 2.9E-11 80.7 24.7 258 110-396 341-629 (835)
172 COG1729 Uncharacterized protei 98.9 5.4E-08 1.2E-12 81.5 14.6 105 159-264 142-252 (262)
173 PF12688 TPR_5: Tetratrico pep 98.9 5.2E-08 1.1E-12 72.7 13.0 95 160-254 3-103 (120)
174 COG3898 Uncharacterized membra 98.9 5.7E-06 1.2E-10 72.3 26.7 261 80-383 116-392 (531)
175 PF14559 TPR_19: Tetratricopep 98.9 8E-09 1.7E-13 69.7 7.1 67 202-269 1-67 (68)
176 COG0457 NrfG FOG: TPR repeat [ 98.9 7.5E-06 1.6E-10 69.6 27.5 220 98-352 37-268 (291)
177 PF13512 TPR_18: Tetratricopep 98.9 1.6E-07 3.5E-12 71.2 14.5 103 156-258 8-131 (142)
178 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 6.6E-08 1.4E-12 87.4 14.4 113 129-253 182-295 (395)
179 PF13371 TPR_9: Tetratricopept 98.8 2.2E-08 4.9E-13 68.5 8.4 64 166-229 3-66 (73)
180 PF13371 TPR_9: Tetratricopept 98.8 3.1E-08 6.7E-13 67.8 8.8 70 198-268 1-70 (73)
181 PF12688 TPR_5: Tetratrico pep 98.8 1.3E-07 2.8E-12 70.6 12.5 99 262-382 2-103 (120)
182 KOG1070 rRNA processing protei 98.8 9.5E-07 2.1E-11 88.2 21.7 192 176-394 1442-1640(1710)
183 KOG4234 TPR repeat-containing 98.8 8.3E-08 1.8E-12 75.8 11.5 112 160-272 97-213 (271)
184 COG1729 Uncharacterized protei 98.8 1.5E-07 3.2E-12 78.9 13.7 108 264-393 144-254 (262)
185 KOG1941 Acetylcholine receptor 98.8 6.7E-07 1.5E-11 77.2 17.7 209 161-384 46-276 (518)
186 COG4700 Uncharacterized protei 98.8 2.3E-06 5.1E-11 67.0 19.1 150 203-378 67-217 (251)
187 PF13512 TPR_18: Tetratricopep 98.8 3.2E-07 7E-12 69.6 13.9 112 257-390 6-135 (142)
188 KOG2796 Uncharacterized conser 98.8 2.3E-06 5E-11 70.8 18.6 213 156-387 67-319 (366)
189 COG4700 Uncharacterized protei 98.8 1.2E-06 2.5E-11 68.7 16.0 129 159-289 90-221 (251)
190 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 2.3E-07 5.1E-12 83.5 12.2 69 153-221 70-141 (453)
191 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 5.8E-07 1.3E-11 81.0 13.6 70 187-256 70-142 (453)
192 KOG4234 TPR repeat-containing 98.6 2.4E-07 5.1E-12 73.3 9.3 71 322-392 136-206 (271)
193 KOG1586 Protein required for f 98.6 6.6E-06 1.4E-10 66.9 17.5 186 172-391 28-232 (288)
194 KOG4555 TPR repeat-containing 98.6 3.5E-06 7.6E-11 62.0 13.8 98 161-258 46-147 (175)
195 KOG4648 Uncharacterized conser 98.6 7.2E-08 1.6E-12 82.4 5.0 191 195-387 100-300 (536)
196 KOG3081 Vesicle coat complex C 98.6 7.8E-05 1.7E-09 62.2 21.9 195 160-388 74-276 (299)
197 PF13424 TPR_12: Tetratricopep 98.5 1.1E-07 2.4E-12 66.0 4.6 61 194-254 7-74 (78)
198 PF13424 TPR_12: Tetratricopep 98.5 1.3E-07 2.7E-12 65.7 4.8 67 155-221 2-75 (78)
199 PF06552 TOM20_plant: Plant sp 98.5 1.7E-06 3.7E-11 67.8 11.1 96 173-269 6-122 (186)
200 KOG3617 WD40 and TPR repeat-co 98.5 5.5E-05 1.2E-09 72.3 21.9 239 114-380 798-1106(1416)
201 KOG4555 TPR repeat-containing 98.5 6.9E-06 1.5E-10 60.5 12.4 97 194-290 45-144 (175)
202 KOG3617 WD40 and TPR repeat-co 98.5 1.4E-05 2.9E-10 76.3 17.3 172 163-382 805-995 (1416)
203 KOG2053 Mitochondrial inherita 98.4 6.9E-05 1.5E-09 72.3 21.6 194 168-387 19-224 (932)
204 KOG2610 Uncharacterized conser 98.4 1.3E-05 2.9E-10 68.7 15.1 162 164-347 109-274 (491)
205 PF13281 DUF4071: Domain of un 98.4 9.6E-05 2.1E-09 66.1 20.7 181 158-355 141-340 (374)
206 PF06552 TOM20_plant: Plant sp 98.4 5E-06 1.1E-10 65.3 11.1 98 242-392 7-118 (186)
207 COG4105 ComL DNA uptake lipopr 98.4 5E-05 1.1E-09 63.4 17.4 130 155-284 68-227 (254)
208 KOG4642 Chaperone-dependent E3 98.4 5.7E-06 1.2E-10 67.5 11.3 95 161-255 13-107 (284)
209 COG3898 Uncharacterized membra 98.4 0.00027 5.9E-09 62.1 22.0 205 163-388 89-297 (531)
210 PF05843 Suf: Suppressor of fo 98.4 3.1E-05 6.6E-10 68.0 16.3 134 160-294 3-140 (280)
211 PF13428 TPR_14: Tetratricopep 98.3 1.5E-06 3.3E-11 52.5 5.4 40 194-233 3-42 (44)
212 PF04184 ST7: ST7 protein; In 98.3 6.7E-05 1.4E-09 68.2 17.6 117 169-287 179-321 (539)
213 PF13428 TPR_14: Tetratricopep 98.3 2.5E-06 5.4E-11 51.5 5.7 40 355-394 2-41 (44)
214 KOG4642 Chaperone-dependent E3 98.3 3.9E-06 8.4E-11 68.5 8.0 100 195-295 13-112 (284)
215 KOG2796 Uncharacterized conser 98.2 4.2E-05 9E-10 63.6 13.4 132 160-292 179-317 (366)
216 KOG1586 Protein required for f 98.2 0.00018 3.9E-09 58.8 16.6 183 131-355 30-230 (288)
217 KOG1585 Protein required for f 98.2 0.00041 9E-09 57.2 18.7 198 160-379 33-252 (308)
218 PF04184 ST7: ST7 protein; In 98.2 0.00014 3E-09 66.2 17.3 172 197-393 173-385 (539)
219 KOG2610 Uncharacterized conser 98.2 0.00018 4E-09 61.9 16.4 167 195-388 106-283 (491)
220 PF13431 TPR_17: Tetratricopep 98.2 2E-06 4.3E-11 48.4 3.2 34 342-375 1-34 (34)
221 KOG1585 Protein required for f 98.2 0.00074 1.6E-08 55.7 19.1 181 193-394 32-234 (308)
222 PF13431 TPR_17: Tetratricopep 98.1 2.8E-06 6.2E-11 47.8 3.0 32 181-212 2-33 (34)
223 COG3118 Thioredoxin domain-con 98.1 0.00048 1E-08 58.7 17.4 132 155-289 131-264 (304)
224 PF05843 Suf: Suppressor of fo 98.1 0.00023 4.9E-09 62.5 15.5 137 194-353 3-140 (280)
225 PF00515 TPR_1: Tetratricopept 98.1 8.8E-06 1.9E-10 46.0 4.4 34 354-387 1-34 (34)
226 KOG0545 Aryl-hydrocarbon recep 98.1 7.6E-05 1.7E-09 61.4 11.3 100 159-258 179-296 (329)
227 PF07719 TPR_2: Tetratricopept 98.0 1.4E-05 3E-10 45.1 5.0 34 354-387 1-34 (34)
228 KOG2471 TPR repeat-containing 98.0 0.00064 1.4E-08 61.6 17.2 118 155-273 237-381 (696)
229 KOG0376 Serine-threonine phosp 98.0 1.3E-05 2.8E-10 72.2 6.4 108 163-271 9-116 (476)
230 PF13281 DUF4071: Domain of un 98.0 0.001 2.2E-08 59.7 18.1 170 192-388 141-339 (374)
231 COG3118 Thioredoxin domain-con 97.9 0.0024 5.1E-08 54.6 17.8 160 192-379 134-297 (304)
232 PF03704 BTAD: Bacterial trans 97.9 0.00058 1.3E-08 53.6 13.3 116 164-293 12-128 (146)
233 PF10300 DUF3808: Protein of u 97.9 0.00026 5.7E-09 66.7 13.0 122 171-292 246-378 (468)
234 PF07719 TPR_2: Tetratricopept 97.9 4.7E-05 1E-09 42.9 5.1 29 195-223 4-32 (34)
235 PF00515 TPR_1: Tetratricopept 97.9 3.3E-05 7.1E-10 43.6 4.4 29 195-223 4-32 (34)
236 KOG2471 TPR repeat-containing 97.9 0.00035 7.6E-09 63.2 12.7 219 157-396 99-377 (696)
237 PF03704 BTAD: Bacterial trans 97.9 0.00086 1.9E-08 52.7 13.9 62 193-254 63-124 (146)
238 COG0790 FOG: TPR repeat, SEL1 97.8 0.013 2.9E-07 51.9 22.9 185 169-388 52-271 (292)
239 KOG1914 mRNA cleavage and poly 97.8 0.0046 9.9E-08 57.0 19.2 185 177-386 264-469 (656)
240 KOG0985 Vesicle coat protein c 97.8 0.0039 8.5E-08 61.6 19.7 191 164-380 1054-1246(1666)
241 KOG0545 Aryl-hydrocarbon recep 97.8 0.00027 5.9E-09 58.2 10.2 68 322-389 232-299 (329)
242 PF10300 DUF3808: Protein of u 97.7 0.0046 1E-07 58.4 19.2 183 131-349 173-376 (468)
243 PF08424 NRDE-2: NRDE-2, neces 97.7 0.004 8.7E-08 55.9 17.7 157 179-350 6-184 (321)
244 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00034 7.4E-09 60.3 9.7 102 157-258 80-185 (390)
245 COG2976 Uncharacterized protei 97.7 0.0094 2E-07 47.8 16.7 144 165-353 38-192 (207)
246 KOG2300 Uncharacterized conser 97.7 0.02 4.4E-07 52.2 20.6 195 170-389 287-520 (629)
247 PF08631 SPO22: Meiosis protei 97.7 0.034 7.5E-07 48.8 25.1 223 129-381 6-273 (278)
248 KOG1550 Extracellular protein 97.6 0.018 3.8E-07 55.9 21.6 145 131-291 228-394 (552)
249 PF13181 TPR_8: Tetratricopept 97.6 0.00012 2.5E-09 41.3 4.2 32 355-386 2-33 (34)
250 KOG0376 Serine-threonine phosp 97.6 9.1E-05 2E-09 67.0 5.5 99 131-238 20-118 (476)
251 KOG1258 mRNA processing protei 97.6 0.058 1.2E-06 50.8 23.2 195 151-368 290-489 (577)
252 KOG1550 Extracellular protein 97.6 0.012 2.6E-07 57.1 19.8 176 173-382 227-425 (552)
253 KOG0530 Protein farnesyltransf 97.6 0.0092 2E-07 50.0 16.0 117 172-289 57-175 (318)
254 KOG1308 Hsp70-interacting prot 97.5 8.4E-05 1.8E-09 64.2 3.9 95 164-258 120-214 (377)
255 KOG0530 Protein farnesyltransf 97.5 0.043 9.3E-07 46.2 20.6 111 155-266 74-186 (318)
256 PF02259 FAT: FAT domain; Int 97.3 0.065 1.4E-06 48.9 20.7 114 260-394 145-298 (352)
257 COG2976 Uncharacterized protei 97.3 0.018 3.9E-07 46.2 14.3 113 176-290 70-188 (207)
258 COG2909 MalT ATP-dependent tra 97.3 0.13 2.9E-06 50.7 22.7 204 157-383 414-647 (894)
259 KOG0551 Hsp90 co-chaperone CNS 97.3 0.017 3.7E-07 50.2 14.9 95 194-289 83-181 (390)
260 PF13176 TPR_7: Tetratricopept 97.3 0.00025 5.3E-09 40.5 2.8 28 356-383 1-28 (36)
261 PF13181 TPR_8: Tetratricopept 97.3 0.0006 1.3E-08 38.3 4.3 28 195-222 4-31 (34)
262 KOG1308 Hsp70-interacting prot 97.3 0.00025 5.4E-09 61.4 3.7 88 201-289 123-210 (377)
263 KOG0985 Vesicle coat protein c 97.3 0.05 1.1E-06 54.2 19.3 204 156-378 1102-1336(1666)
264 PF08424 NRDE-2: NRDE-2, neces 97.3 0.017 3.7E-07 51.9 15.5 144 213-384 6-184 (321)
265 PF13174 TPR_6: Tetratricopept 97.2 0.00065 1.4E-08 37.7 4.1 32 356-387 2-33 (33)
266 KOG1914 mRNA cleavage and poly 97.2 0.19 4.1E-06 46.8 24.0 139 250-390 269-437 (656)
267 KOG2300 Uncharacterized conser 97.2 0.11 2.3E-06 47.8 19.3 225 129-377 288-550 (629)
268 KOG4507 Uncharacterized conser 97.2 0.0017 3.6E-08 60.3 8.1 109 163-272 612-721 (886)
269 PF02259 FAT: FAT domain; Int 97.1 0.16 3.4E-06 46.4 20.8 164 224-387 144-342 (352)
270 PF09613 HrpB1_HrpK: Bacterial 97.1 0.012 2.6E-07 45.9 10.7 98 159-257 11-108 (160)
271 PF04910 Tcf25: Transcriptiona 97.1 0.074 1.6E-06 48.4 17.4 149 183-351 31-224 (360)
272 KOG3824 Huntingtin interacting 97.1 0.0023 4.9E-08 54.7 7.1 70 326-395 122-191 (472)
273 COG2909 MalT ATP-dependent tra 97.1 0.33 7E-06 48.1 22.3 224 131-379 431-684 (894)
274 PF13174 TPR_6: Tetratricopept 97.0 0.0015 3.3E-08 36.2 4.3 30 161-190 3-32 (33)
275 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.069 1.5E-06 48.5 16.3 177 178-382 288-494 (660)
276 KOG3616 Selective LIM binding 97.0 0.022 4.7E-07 54.7 13.8 135 198-377 712-847 (1636)
277 PF13176 TPR_7: Tetratricopept 97.0 0.0021 4.5E-08 36.6 4.3 25 195-219 2-26 (36)
278 PF14561 TPR_20: Tetratricopep 96.9 0.014 2.9E-07 41.3 9.3 64 178-241 8-73 (90)
279 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.004 8.7E-08 38.8 5.4 34 357-390 4-37 (53)
280 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0073 1.6E-07 37.6 6.5 38 194-231 3-40 (53)
281 COG0790 FOG: TPR repeat, SEL1 96.9 0.29 6.4E-06 43.3 23.2 143 131-289 57-219 (292)
282 KOG4507 Uncharacterized conser 96.8 0.012 2.7E-07 54.8 10.2 100 129-237 620-721 (886)
283 KOG3783 Uncharacterized conser 96.8 0.44 9.6E-06 44.5 20.5 225 155-386 264-523 (546)
284 KOG3824 Huntingtin interacting 96.8 0.0052 1.1E-07 52.6 7.2 74 161-234 119-192 (472)
285 PRK10941 hypothetical protein; 96.8 0.019 4.1E-07 49.6 10.7 77 194-271 183-259 (269)
286 PF09613 HrpB1_HrpK: Bacterial 96.8 0.043 9.4E-07 42.9 11.5 85 193-278 11-95 (160)
287 KOG2396 HAT (Half-A-TPR) repea 96.7 0.035 7.5E-07 51.0 12.3 89 177-266 90-179 (568)
288 KOG2041 WD40 repeat protein [G 96.7 0.089 1.9E-06 50.4 15.1 123 155-287 689-822 (1189)
289 PRK10941 hypothetical protein; 96.7 0.03 6.5E-07 48.4 11.4 71 228-299 183-253 (269)
290 PF04910 Tcf25: Transcriptiona 96.7 0.21 4.5E-06 45.5 17.2 153 218-393 32-232 (360)
291 smart00028 TPR Tetratricopepti 96.7 0.0036 7.9E-08 34.0 3.9 32 355-386 2-33 (34)
292 KOG2422 Uncharacterized conser 96.7 0.19 4E-06 47.2 16.6 160 170-351 250-450 (665)
293 PF14561 TPR_20: Tetratricopep 96.6 0.037 8.1E-07 39.1 9.2 75 211-285 7-82 (90)
294 KOG3616 Selective LIM binding 96.6 0.12 2.6E-06 49.9 14.9 81 194-284 767-847 (1636)
295 PF04781 DUF627: Protein of un 96.5 0.038 8.3E-07 40.1 9.2 44 244-288 62-105 (111)
296 COG4976 Predicted methyltransf 96.5 0.0054 1.2E-07 50.3 5.0 61 328-388 3-63 (287)
297 TIGR02561 HrpB1_HrpK type III 96.5 0.057 1.2E-06 41.5 10.1 82 161-242 13-94 (153)
298 KOG2396 HAT (Half-A-TPR) repea 96.3 0.06 1.3E-06 49.5 10.8 92 131-231 87-179 (568)
299 smart00028 TPR Tetratricopepti 96.2 0.01 2.3E-07 32.0 4.1 30 160-189 3-32 (34)
300 PF12968 DUF3856: Domain of Un 96.2 0.17 3.8E-06 37.1 10.9 94 237-348 20-128 (144)
301 PF04781 DUF627: Protein of un 96.2 0.047 1E-06 39.6 8.0 92 164-255 2-107 (111)
302 PF12968 DUF3856: Domain of Un 96.2 0.26 5.7E-06 36.2 11.6 56 165-220 16-83 (144)
303 COG4649 Uncharacterized protei 96.1 0.49 1.1E-05 37.4 16.8 136 203-365 69-211 (221)
304 PRK15180 Vi polysaccharide bio 96.1 0.029 6.3E-07 51.2 8.2 79 205-284 302-380 (831)
305 KOG1464 COP9 signalosome, subu 96.1 0.29 6.3E-06 41.6 13.4 199 171-384 40-261 (440)
306 PF07079 DUF1347: Protein of u 96.1 0.16 3.4E-06 46.4 12.3 51 201-252 471-521 (549)
307 KOG4814 Uncharacterized conser 96.0 0.78 1.7E-05 43.8 16.9 99 194-293 356-460 (872)
308 KOG1310 WD40 repeat protein [G 96.0 0.042 9.1E-07 50.8 8.5 104 155-258 371-477 (758)
309 TIGR02561 HrpB1_HrpK type III 96.0 0.17 3.7E-06 38.9 10.5 83 195-278 13-95 (153)
310 PF10345 Cohesin_load: Cohesin 96.0 1.9 4.2E-05 42.6 23.9 184 174-380 37-251 (608)
311 COG4976 Predicted methyltransf 96.0 0.014 3.1E-07 47.9 5.0 58 168-225 5-62 (287)
312 KOG2041 WD40 repeat protein [G 95.9 0.35 7.6E-06 46.6 14.5 81 193-286 797-877 (1189)
313 KOG3364 Membrane protein invol 95.9 0.11 2.4E-06 39.0 9.0 72 159-230 33-109 (149)
314 PF10602 RPN7: 26S proteasome 95.9 0.23 4.9E-06 40.2 11.8 61 160-220 38-101 (177)
315 PF10345 Cohesin_load: Cohesin 95.9 2.1 4.5E-05 42.4 20.7 203 160-382 363-605 (608)
316 KOG1258 mRNA processing protei 95.9 1.7 3.7E-05 41.3 25.9 76 103-188 64-144 (577)
317 KOG3364 Membrane protein invol 95.9 0.053 1.1E-06 40.7 7.1 72 321-392 33-109 (149)
318 COG5191 Uncharacterized conser 95.9 0.017 3.7E-07 49.7 5.2 81 315-395 100-183 (435)
319 PF10602 RPN7: 26S proteasome 95.8 0.1 2.2E-06 42.3 9.5 63 228-290 38-102 (177)
320 PRK15180 Vi polysaccharide bio 95.7 0.12 2.7E-06 47.3 10.4 123 169-292 300-422 (831)
321 PF08631 SPO22: Meiosis protei 95.7 1.3 2.8E-05 38.9 19.7 120 169-289 4-149 (278)
322 COG4649 Uncharacterized protei 95.6 0.9 2E-05 36.0 14.1 126 162-288 62-194 (221)
323 KOG1839 Uncharacterized protei 95.5 0.19 4.2E-06 51.7 11.7 172 159-348 933-1127(1236)
324 PF09986 DUF2225: Uncharacteri 95.4 0.23 5.1E-06 41.5 10.5 89 131-221 93-194 (214)
325 COG3914 Spy Predicted O-linked 95.4 0.52 1.1E-05 44.6 13.4 100 165-265 74-180 (620)
326 KOG2422 Uncharacterized conser 95.4 1 2.2E-05 42.6 15.0 136 155-292 281-450 (665)
327 KOG0890 Protein kinase of the 95.4 1.9 4.1E-05 47.7 18.9 222 161-384 1452-1732(2382)
328 PF13374 TPR_10: Tetratricopep 95.3 0.047 1E-06 31.9 4.6 29 355-383 3-31 (42)
329 COG5191 Uncharacterized conser 95.3 0.046 1E-06 47.1 5.8 76 155-230 104-180 (435)
330 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.4 5.2E-05 39.0 19.0 221 136-396 289-546 (660)
331 KOG1464 COP9 signalosome, subu 95.3 1.2 2.6E-05 38.0 13.8 161 205-388 40-225 (440)
332 PF07079 DUF1347: Protein of u 95.2 2.5 5.3E-05 39.0 20.9 192 166-379 306-520 (549)
333 KOG1538 Uncharacterized conser 95.2 1.2 2.6E-05 42.7 15.1 177 163-380 637-830 (1081)
334 PF09986 DUF2225: Uncharacteri 95.2 0.28 6.2E-06 41.0 10.2 67 192-258 118-197 (214)
335 PRK13184 pknD serine/threonine 95.1 3.2 6.9E-05 42.8 19.0 85 173-258 534-623 (932)
336 KOG1839 Uncharacterized protei 95.1 0.37 8E-06 49.8 12.5 168 195-382 935-1127(1236)
337 PF13374 TPR_10: Tetratricopep 95.1 0.066 1.4E-06 31.2 4.6 28 194-221 4-31 (42)
338 PF04053 Coatomer_WDAD: Coatom 95.0 1.6 3.5E-05 41.0 15.5 103 166-287 269-373 (443)
339 KOG4814 Uncharacterized conser 94.9 0.42 9.1E-06 45.6 11.3 94 162-255 358-457 (872)
340 COG3914 Spy Predicted O-linked 94.6 1.6 3.5E-05 41.4 14.3 133 211-363 50-185 (620)
341 PF07720 TPR_3: Tetratricopept 94.3 0.2 4.3E-06 28.3 4.9 33 355-387 2-36 (36)
342 COG2912 Uncharacterized conser 94.1 0.48 1E-05 40.6 9.1 74 194-268 183-256 (269)
343 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.66 1.4E-05 31.4 7.6 59 161-219 9-70 (80)
344 COG3629 DnrI DNA-binding trans 93.9 0.57 1.2E-05 40.6 9.4 67 226-293 153-219 (280)
345 KOG0529 Protein geranylgeranyl 93.9 4.7 0.0001 36.7 15.1 125 241-393 90-234 (421)
346 KOG3807 Predicted membrane pro 93.8 4.4 9.5E-05 35.8 15.1 109 167-287 193-301 (556)
347 PF12862 Apc5: Anaphase-promot 93.8 0.39 8.5E-06 34.2 7.0 29 228-256 43-71 (94)
348 COG1747 Uncharacterized N-term 93.8 6.1 0.00013 37.2 23.3 203 155-386 63-291 (711)
349 PF04053 Coatomer_WDAD: Coatom 93.8 2.1 4.5E-05 40.3 13.5 129 201-373 270-408 (443)
350 PF07720 TPR_3: Tetratricopept 93.7 0.32 6.8E-06 27.5 5.0 21 194-214 3-23 (36)
351 PF07721 TPR_4: Tetratricopept 93.6 0.13 2.7E-06 26.6 3.1 24 355-378 2-25 (26)
352 PF12862 Apc5: Anaphase-promot 93.5 0.42 9.1E-06 34.1 6.7 57 167-223 7-72 (94)
353 COG5159 RPN6 26S proteasome re 93.4 4.8 0.0001 34.8 15.1 203 162-383 7-235 (421)
354 KOG1463 26S proteasome regulat 93.3 5.6 0.00012 35.3 15.9 169 195-386 131-319 (411)
355 COG3629 DnrI DNA-binding trans 93.2 0.65 1.4E-05 40.3 8.6 64 191-254 152-215 (280)
356 PF07721 TPR_4: Tetratricopept 93.1 0.16 3.5E-06 26.2 3.0 21 195-215 4-24 (26)
357 COG2912 Uncharacterized conser 93.0 0.98 2.1E-05 38.7 9.2 67 229-296 184-250 (269)
358 COG5159 RPN6 26S proteasome re 92.9 5.8 0.00013 34.3 16.8 95 196-291 129-236 (421)
359 KOG1310 WD40 repeat protein [G 92.8 0.42 9.1E-06 44.6 7.1 88 204-292 386-476 (758)
360 KOG2581 26S proteasome regulat 92.7 3 6.4E-05 37.9 11.9 59 326-386 215-279 (493)
361 PF15015 NYD-SP12_N: Spermatog 92.7 1.6 3.4E-05 39.7 10.2 89 165-253 183-289 (569)
362 PF11207 DUF2989: Protein of u 92.6 2 4.4E-05 35.1 10.0 80 203-283 117-200 (203)
363 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.34 7.3E-06 27.8 3.8 30 355-384 2-31 (38)
364 KOG2063 Vacuolar assembly/sort 92.3 14 0.0003 37.8 17.2 177 160-348 506-712 (877)
365 PF15015 NYD-SP12_N: Spermatog 92.3 1.1 2.3E-05 40.8 8.7 56 326-381 234-289 (569)
366 PF11207 DUF2989: Protein of u 92.3 2.6 5.5E-05 34.5 10.2 57 318-375 139-199 (203)
367 PF10579 Rapsyn_N: Rapsyn N-te 92.0 1.9 4.2E-05 29.2 7.6 49 202-250 16-67 (80)
368 PRK11619 lytic murein transgly 91.7 15 0.00034 36.5 23.2 211 164-380 247-465 (644)
369 PF10516 SHNi-TPR: SHNi-TPR; 91.6 0.43 9.2E-06 27.3 3.7 28 228-255 3-30 (38)
370 KOG0529 Protein geranylgeranyl 91.5 11 0.00024 34.5 14.4 99 173-272 90-194 (421)
371 PF13041 PPR_2: PPR repeat fam 91.4 1.4 2.9E-05 26.9 6.3 41 227-267 4-44 (50)
372 PF10373 EST1_DNA_bind: Est1 D 91.1 1.1 2.4E-05 39.3 7.9 62 211-273 1-62 (278)
373 PF10373 EST1_DNA_bind: Est1 D 91.0 0.79 1.7E-05 40.2 6.8 56 339-394 1-56 (278)
374 PF12739 TRAPPC-Trs85: ER-Golg 90.9 14 0.0003 34.6 15.9 97 159-255 209-329 (414)
375 PRK11619 lytic murein transgly 90.9 19 0.0004 36.0 24.8 62 321-382 313-374 (644)
376 KOG3807 Predicted membrane pro 90.2 13 0.00028 33.0 18.1 122 151-284 211-334 (556)
377 KOG3783 Uncharacterized conser 90.0 18 0.00038 34.4 16.0 223 104-352 253-523 (546)
378 KOG0890 Protein kinase of the 89.7 41 0.00089 38.2 23.1 119 242-387 1645-1788(2382)
379 PF11817 Foie-gras_1: Foie gra 89.4 4.6 9.9E-05 34.8 10.0 58 194-251 180-243 (247)
380 PF00244 14-3-3: 14-3-3 protei 89.2 6.7 0.00015 33.5 10.7 170 195-382 4-197 (236)
381 COG3947 Response regulator con 89.2 1.7 3.7E-05 37.6 6.8 59 195-253 282-340 (361)
382 COG3947 Response regulator con 89.2 1.9 4.1E-05 37.3 7.1 63 228-291 281-343 (361)
383 smart00386 HAT HAT (Half-A-TPR 88.9 0.99 2.1E-05 24.2 3.9 27 368-394 1-27 (33)
384 PRK13184 pknD serine/threonine 88.8 4.2 9.1E-05 41.9 10.6 96 165-262 482-587 (932)
385 PF11817 Foie-gras_1: Foie gra 88.8 14 0.0003 31.8 12.5 59 323-381 181-245 (247)
386 KOG0546 HSP90 co-chaperone CPR 88.8 0.87 1.9E-05 40.4 5.0 71 323-393 278-348 (372)
387 PF04190 DUF410: Protein of un 88.7 15 0.00033 31.8 18.1 101 170-284 2-113 (260)
388 TIGR03504 FimV_Cterm FimV C-te 88.2 1.2 2.6E-05 26.4 3.9 25 358-382 3-27 (44)
389 PF13041 PPR_2: PPR repeat fam 88.0 3.4 7.4E-05 25.1 6.2 30 260-289 2-31 (50)
390 smart00386 HAT HAT (Half-A-TPR 87.9 1.8 4E-05 23.0 4.5 31 334-364 1-31 (33)
391 KOG2114 Vacuolar assembly/sort 87.9 22 0.00049 35.7 14.1 54 166-220 342-396 (933)
392 COG4941 Predicted RNA polymera 87.7 20 0.00043 32.0 17.0 156 209-390 213-401 (415)
393 smart00299 CLH Clathrin heavy 87.6 11 0.00024 28.9 14.6 27 334-365 110-136 (140)
394 COG1747 Uncharacterized N-term 87.4 27 0.00058 33.1 19.7 182 188-394 62-245 (711)
395 KOG2581 26S proteasome regulat 87.1 11 0.00025 34.3 10.9 101 158-258 169-279 (493)
396 TIGR03504 FimV_Cterm FimV C-te 86.5 1.8 4E-05 25.7 4.0 25 196-220 3-27 (44)
397 KOG0686 COP9 signalosome, subu 86.5 23 0.0005 32.5 12.4 153 227-396 151-317 (466)
398 COG4941 Predicted RNA polymera 86.4 23 0.00051 31.5 16.7 163 173-361 211-406 (415)
399 PF12854 PPR_1: PPR repeat 86.3 2 4.3E-05 23.8 4.0 23 194-216 9-31 (34)
400 COG4455 ImpE Protein of avirul 86.1 19 0.00041 30.1 12.8 61 166-226 9-69 (273)
401 PF12854 PPR_1: PPR repeat 86.0 2.5 5.3E-05 23.4 4.2 26 354-379 7-32 (34)
402 KOG1538 Uncharacterized conser 85.9 5.4 0.00012 38.6 8.7 51 233-287 780-830 (1081)
403 PF09670 Cas_Cas02710: CRISPR- 85.9 17 0.00037 33.6 12.0 60 162-221 135-198 (379)
404 PF10255 Paf67: RNA polymerase 85.7 1.7 3.7E-05 39.9 5.4 59 161-220 125-192 (404)
405 KOG2758 Translation initiation 85.6 25 0.00055 31.1 13.7 66 155-220 126-195 (432)
406 PF09797 NatB_MDM20: N-acetylt 85.5 23 0.00051 32.5 12.8 48 171-218 196-243 (365)
407 PF09205 DUF1955: Domain of un 85.2 15 0.00032 28.0 12.2 143 85-256 3-150 (161)
408 COG4455 ImpE Protein of avirul 84.8 4.4 9.6E-05 33.6 6.7 62 328-389 9-70 (273)
409 KOG1920 IkappaB kinase complex 84.7 49 0.0011 34.8 15.1 15 170-184 892-906 (1265)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 84.4 16 0.00034 27.7 13.9 113 246-381 5-126 (126)
411 KOG0686 COP9 signalosome, subu 83.6 36 0.00078 31.3 14.4 95 193-287 151-255 (466)
412 KOG2114 Vacuolar assembly/sort 82.3 30 0.00064 34.9 12.2 83 159-247 369-452 (933)
413 COG5187 RPN7 26S proteasome re 81.8 35 0.00075 29.8 11.4 122 171-292 88-223 (412)
414 PF14863 Alkyl_sulf_dimr: Alky 81.3 8.3 0.00018 29.8 6.8 49 192-240 70-118 (141)
415 PF10255 Paf67: RNA polymerase 81.2 3 6.6E-05 38.4 5.1 57 197-253 127-191 (404)
416 PF09205 DUF1955: Domain of un 80.8 14 0.0003 28.1 7.4 56 328-383 94-149 (161)
417 PF14863 Alkyl_sulf_dimr: Alky 80.4 5.5 0.00012 30.8 5.5 51 158-208 70-120 (141)
418 TIGR00985 3a0801s04tom mitocho 80.4 21 0.00046 27.7 8.7 32 162-193 94-126 (148)
419 KOG0276 Vesicle coat complex C 80.3 39 0.00084 32.8 11.8 45 203-252 648-692 (794)
420 PF04348 LppC: LppC putative l 80.1 0.55 1.2E-05 45.4 0.0 113 179-291 10-128 (536)
421 PF01535 PPR: PPR repeat; Int 80.0 3.3 7.1E-05 21.7 3.2 21 198-218 6-26 (31)
422 KOG0546 HSP90 co-chaperone CPR 79.9 3.1 6.8E-05 37.0 4.5 107 164-271 228-353 (372)
423 KOG0128 RNA-binding protein SA 79.1 77 0.0017 32.1 20.8 132 112-256 109-261 (881)
424 KOG1463 26S proteasome regulat 78.7 49 0.0011 29.7 17.3 164 163-351 133-318 (411)
425 PF01535 PPR: PPR repeat; Int 78.2 3.9 8.5E-05 21.4 3.2 26 229-254 3-28 (31)
426 KOG4279 Serine/threonine prote 78.1 20 0.00044 35.5 9.5 118 156-276 199-335 (1226)
427 KOG4014 Uncharacterized conser 77.5 37 0.00079 27.6 16.6 185 155-383 31-233 (248)
428 KOG0128 RNA-binding protein SA 77.2 88 0.0019 31.7 21.3 215 155-393 110-351 (881)
429 KOG2561 Adaptor protein NUB1, 77.0 50 0.0011 30.7 11.1 30 263-292 269-298 (568)
430 KOG2063 Vacuolar assembly/sort 76.0 1E+02 0.0022 31.9 14.6 29 354-382 684-712 (877)
431 PF11846 DUF3366: Domain of un 75.6 14 0.0003 30.3 7.1 50 336-386 127-176 (193)
432 TIGR00756 PPR pentatricopeptid 75.3 7.8 0.00017 20.7 4.0 24 196-219 4-27 (35)
433 KOG4014 Uncharacterized conser 73.1 49 0.0011 26.9 15.6 173 131-349 44-233 (248)
434 PF09670 Cas_Cas02710: CRISPR- 72.3 82 0.0018 29.2 14.2 60 196-255 135-198 (379)
435 PF13812 PPR_3: Pentatricopept 71.5 14 0.00029 19.8 4.4 26 195-220 4-29 (34)
436 PHA02537 M terminase endonucle 71.0 64 0.0014 27.3 11.2 22 332-353 190-211 (230)
437 PF06957 COPI_C: Coatomer (COP 70.9 4.2 9.1E-05 37.7 3.1 34 82-115 202-235 (422)
438 PF12739 TRAPPC-Trs85: ER-Golg 70.9 94 0.002 29.2 16.2 96 194-289 210-328 (414)
439 cd02680 MIT_calpain7_2 MIT: do 70.8 10 0.00022 25.6 4.2 16 205-220 19-34 (75)
440 COG5536 BET4 Protein prenyltra 70.5 46 0.001 28.9 8.8 160 101-270 49-236 (328)
441 PF00244 14-3-3: 14-3-3 protei 70.1 69 0.0015 27.3 13.9 165 161-348 4-197 (236)
442 PF13226 DUF4034: Domain of un 69.9 76 0.0017 27.8 11.0 112 166-278 8-150 (277)
443 PF11846 DUF3366: Domain of un 68.9 20 0.00043 29.4 6.5 43 245-289 130-172 (193)
444 KOG0687 26S proteasome regulat 65.4 1E+02 0.0022 27.6 11.2 102 192-293 104-213 (393)
445 smart00101 14_3_3 14-3-3 homol 65.4 88 0.0019 26.8 16.8 47 336-382 144-199 (244)
446 cd02680 MIT_calpain7_2 MIT: do 65.3 16 0.00035 24.7 4.2 23 165-187 13-35 (75)
447 PF10952 DUF2753: Protein of u 65.0 38 0.00082 25.4 6.3 27 161-187 4-30 (140)
448 KOG1920 IkappaB kinase complex 65.0 1.6E+02 0.0034 31.4 12.7 47 326-379 1005-1051(1265)
449 PF04190 DUF410: Protein of un 64.6 96 0.0021 26.9 16.3 146 204-383 2-170 (260)
450 PF04212 MIT: MIT (microtubule 64.3 15 0.00032 24.2 4.0 26 161-186 8-33 (69)
451 KOG0276 Vesicle coat complex C 64.1 45 0.00098 32.4 8.3 71 207-287 622-692 (794)
452 PF07219 HemY_N: HemY protein 63.2 39 0.00084 24.7 6.4 42 199-240 66-107 (108)
453 cd02681 MIT_calpain7_1 MIT: do 62.2 16 0.00034 24.8 3.8 25 162-186 10-34 (76)
454 PF12753 Nro1: Nuclear pore co 61.8 28 0.0006 31.9 6.3 19 26-44 3-21 (404)
455 PF02184 HAT: HAT (Half-A-TPR) 61.2 22 0.00047 19.4 3.5 26 241-268 2-27 (32)
456 PF10952 DUF2753: Protein of u 61.2 64 0.0014 24.2 6.9 27 195-221 4-30 (140)
457 smart00299 CLH Clathrin heavy 60.5 73 0.0016 24.2 13.7 78 168-251 17-94 (140)
458 KOG4521 Nuclear pore complex, 59.4 2.5E+02 0.0054 30.1 12.9 117 158-278 920-1071(1480)
459 cd02683 MIT_1 MIT: domain cont 59.2 20 0.00044 24.3 4.0 25 162-186 10-34 (77)
460 KOG4151 Myosin assembly protei 58.7 50 0.0011 33.0 7.9 94 165-258 60-159 (748)
461 PF04090 RNA_pol_I_TF: RNA pol 57.7 1.1E+02 0.0023 25.3 11.6 115 157-272 40-189 (199)
462 cd02682 MIT_AAA_Arch MIT: doma 57.4 22 0.00049 24.0 3.9 18 372-389 31-48 (75)
463 COG3107 LppC Putative lipoprot 57.0 1.9E+02 0.0041 27.9 14.5 106 178-283 48-158 (604)
464 TIGR03362 VI_chp_7 type VI sec 56.8 1.5E+02 0.0031 26.5 17.9 171 188-383 96-279 (301)
465 KOG0292 Vesicle coat complex C 56.7 53 0.0011 33.5 7.6 122 83-228 990-1120(1202)
466 PRK15490 Vi polysaccharide bio 56.3 75 0.0016 31.1 8.5 61 155-217 39-99 (578)
467 PF07163 Pex26: Pex26 protein; 56.0 1.4E+02 0.0031 26.2 13.6 122 162-284 39-181 (309)
468 KOG1497 COP9 signalosome, subu 56.0 1E+02 0.0022 27.5 8.4 96 159-255 104-213 (399)
469 smart00671 SEL1 Sel1-like repe 55.9 31 0.00068 18.6 4.0 27 356-382 3-33 (36)
470 KOG4279 Serine/threonine prote 55.6 1.5E+02 0.0033 29.9 10.3 70 171-241 256-335 (1226)
471 PRK15490 Vi polysaccharide bio 55.0 1.4E+02 0.003 29.3 10.1 80 169-250 19-98 (578)
472 PF07163 Pex26: Pex26 protein; 54.8 1.5E+02 0.0032 26.0 11.1 121 233-378 42-182 (309)
473 TIGR03362 VI_chp_7 type VI sec 54.5 1.6E+02 0.0035 26.3 17.0 147 170-349 111-279 (301)
474 cd02684 MIT_2 MIT: domain cont 54.5 29 0.00063 23.4 4.1 23 164-186 12-34 (75)
475 PRK12798 chemotaxis protein; R 53.5 1.9E+02 0.0042 26.9 23.3 195 157-379 111-320 (421)
476 PF04212 MIT: MIT (microtubule 52.8 33 0.00072 22.5 4.2 22 326-347 11-32 (69)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 52.3 1E+02 0.0022 23.3 11.0 43 210-252 81-125 (126)
478 COG5187 RPN7 26S proteasome re 51.7 1.7E+02 0.0037 25.8 11.5 28 227-254 116-143 (412)
479 PF08238 Sel1: Sel1 repeat; I 51.1 42 0.0009 18.5 4.1 14 370-383 24-37 (39)
480 KOG4056 Translocase of outer m 50.7 99 0.0022 23.6 6.6 33 162-194 85-117 (143)
481 PRK12798 chemotaxis protein; R 50.3 2.2E+02 0.0047 26.6 21.4 205 165-395 87-300 (421)
482 cd02678 MIT_VPS4 MIT: domain c 50.1 34 0.00074 23.0 4.0 24 163-186 11-34 (75)
483 PF02064 MAS20: MAS20 protein 49.5 39 0.00084 25.3 4.4 28 326-353 69-96 (121)
484 cd02677 MIT_SNX15 MIT: domain 49.5 38 0.00083 22.8 4.1 23 164-186 12-34 (75)
485 COG4259 Uncharacterized protei 49.1 73 0.0016 22.9 5.4 26 261-286 72-97 (121)
486 PF05053 Menin: Menin; InterP 48.9 60 0.0013 31.3 6.5 30 319-348 317-346 (618)
487 cd02682 MIT_AAA_Arch MIT: doma 48.9 82 0.0018 21.3 5.8 25 161-185 9-33 (75)
488 PF02064 MAS20: MAS20 protein 48.6 42 0.00091 25.2 4.5 33 161-193 66-98 (121)
489 PF12753 Nro1: Nuclear pore co 48.5 51 0.0011 30.3 5.8 47 336-384 334-392 (404)
490 KOG1497 COP9 signalosome, subu 48.3 2E+02 0.0044 25.7 12.6 94 192-287 103-210 (399)
491 TIGR02710 CRISPR-associated pr 48.3 2.3E+02 0.0049 26.2 12.9 54 164-217 136-196 (380)
492 PF07219 HemY_N: HemY protein 47.2 1.1E+02 0.0024 22.3 6.9 48 160-207 61-108 (108)
493 cd02681 MIT_calpain7_1 MIT: do 47.1 43 0.00093 22.7 4.0 23 326-348 12-34 (76)
494 PF14929 TAF1_subA: TAF RNA Po 46.3 3E+02 0.0064 27.0 13.8 135 131-289 300-440 (547)
495 PHA02537 M terminase endonucle 45.0 64 0.0014 27.3 5.6 21 238-258 190-210 (230)
496 smart00777 Mad3_BUB1_I Mad3/BU 44.0 1.4E+02 0.003 22.6 8.7 43 337-379 80-124 (125)
497 cd02683 MIT_1 MIT: domain cont 42.5 50 0.0011 22.4 3.8 21 327-347 13-33 (77)
498 cd02679 MIT_spastin MIT: domai 42.1 57 0.0012 22.3 4.0 16 367-382 21-36 (79)
499 KOG4151 Myosin assembly protei 41.9 56 0.0012 32.7 5.4 65 325-389 96-162 (748)
500 PF10938 YfdX: YfdX protein; 41.5 1.3E+02 0.0027 23.8 6.5 118 265-382 6-145 (155)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-36 Score=269.60 Aligned_cols=289 Identities=18% Similarity=0.210 Sum_probs=256.4
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
.+++..||...|.+++...|...-+|.. +|-. .| .-.|+..|.+++.++ |....+|+++|.+|-+.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsn-Lg~~f~~~Gei~~aiq~y~eAvkld---------P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSN-LGCVFNAQGEIWLAIQHYEEAVKLD---------PNFLDAYINLGNVYKEA 265 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehh-cchHHhhcchHHHHHHHHHHhhcCC---------CcchHHHhhHHHHHHHH
Confidence 4566777888888888888887777777 7766 67 888888888888888 99999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
+.+++|+.+|.+++.+.|++..++.++|.+|+.+|..+-|+..|++++++.|..++++.++|.++...|+..+|..+|.+
T Consensus 266 ~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCc--hH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPI--QV 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 322 (398)
++.+.|. .+++.++||.++..+|.+++|..+|.++++..+.-.. +.++...|++.+ ..+.+++.+.|. ++
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 9999999 8999999999999999999999999888887766543 445556666665 668888888887 56
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+.++|..|..+|+.+.|+.+|.+++..+|...+++.+||.+|...|+..+|+..|++++.+.||.+++..|+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-35 Score=261.55 Aligned_cols=299 Identities=17% Similarity=0.143 Sum_probs=254.0
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCC-----------------------
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFL----------------------- 148 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~----------------------- 148 (398)
.+++.++|+..|+.+++..|+..+++.. ++.+ .| .+.|...|..++.+++.+
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~in-la~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYIN-LAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhh-HHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 4566677777777777777766666644 5544 33 555555555555544311
Q ss_pred --CCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 149 --PSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 149 --~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
......|..+.+|.++|-.+...|+...|+..|+++++++|+.+++|.+||.+|...+.|++|+.+|.+++.+.|.+.
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 011222888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhh
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSV 301 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~ 301 (398)
.++-++|.+|.++|+.+-|+.+|++++++.|. .++++.++|.++...|+..+|..+|.+++...+..++ ++++.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999998888877 66777
Q ss_pred hcccccc--ccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 302 KDGRSGD--KKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 302 ~~~~~~~--~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
..+.++. ..+..++...|.. +..+||.+|.++|++++|+.+|++++.+.|...+++.++|..|..+|+...|+..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 7777776 4467777777874 55569999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHhhh
Q 015907 378 IQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 378 ~~al~~~p~~~~~~~~l~~ 396 (398)
.+|+.++|..+++..|+.+
T Consensus 446 ~rAI~~nPt~AeAhsNLas 464 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLAS 464 (966)
T ss_pred HHHHhcCcHHHHHHhhHHH
Confidence 9999999999999988764
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=2.7e-28 Score=237.80 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=208.5
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
....+++++|+..|++++...|+ +..+.. +|.+ .| ++.|+..+.+++.++ |++..+|+.+|.++.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n-~a~~~~~l~~~~~Ai~~~~~al~l~---------p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPD-PVYYSN-RAACHNALGDWEKVVEDTTAALELD---------PDYSKALNRRANAYD 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-hHHHHH-HHHHHHHhCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHH
Confidence 34668899999999999999996 444444 7776 78 999999999999998 999999999999988
Q ss_pred HhccHHHHHHHHHHH-----------------------------------------------------------------
Q 015907 170 EKNVLQTRLKKYEET----------------------------------------------------------------- 184 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~----------------------------------------------------------------- 184 (398)
..|++++|+..|..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 888888886544332
Q ss_pred -----------------------------------Hhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 185 -----------------------------------LSI---SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 185 -----------------------------------l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
+.. .|....++..+|.++..+|++++|+..|+++++++|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 211 234445667777777777888888888888888777777
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
..|..+|.++...|++++|+..|++++..+|+ ++.+++.+|.++...|++++|+.+|++++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~----------------- 427 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSID----------------- 427 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 77777888887888888888888888887777 777788888888888888888888777754
Q ss_pred ccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 307 GDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|. ..+..+|.++..+|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++.++
T Consensus 428 ----------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 428 ----------LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred ----------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4454 4555699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHH
Q 015907 385 PEKVKA 390 (398)
Q Consensus 385 p~~~~~ 390 (398)
|++...
T Consensus 498 p~~~~~ 503 (615)
T TIGR00990 498 KETKPM 503 (615)
T ss_pred Cccccc
Confidence 875443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=5.7e-27 Score=228.54 Aligned_cols=261 Identities=16% Similarity=0.087 Sum_probs=229.7
Q ss_pred HhHHHHHHhhcchhhc---CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYD---APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~---~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
+.+++|++.|+.++.. .|.....+.. +|.+ .| ++.|+..|++++.+. |.....|+.+|.++..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~-lg~~~~~~g~~~eA~~~~~kal~l~---------P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNL-RGTFKCLKGKHLEALADLSKSIELD---------PRVTQSYIKRASMNLE 377 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHH
Confidence 4678899999998865 4666666666 7777 67 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
.|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++..+|++++|+..|+
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHH-H
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLG-K 328 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la-~ 328 (398)
+++...|. ++.++..+|.++...|++++|+..|++++...+.... .... ..+...+ .
T Consensus 458 ~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~--------------------~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 458 RCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP--------------------MYMNVLPLINKALA 516 (615)
T ss_pred HHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc--------------------ccccHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999775432210 1111 1122233 3
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 329 AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 329 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.+...|++++|+.++++++.++|++..++..+|.++..+|++++|+.+|++++++.+...+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3445799999999999999999999999999999999999999999999999999887544
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.1e-25 Score=219.16 Aligned_cols=289 Identities=14% Similarity=0.012 Sum_probs=245.8
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....++..+|..+++.++...|.+++.++. +|++ .| ++.|+..|++++.+. |.++.++..+|.++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~---------P~~~~a~~~la~~l 120 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVN---------VCQPEDVLLVASVL 120 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHH
Confidence 3446788899999999999999999999988 8877 77 999999999999999 99999999999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888876654 47788999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc------ccccccccC
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD------KKETEPQKV 317 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~ 317 (398)
+++++..+|.........++.++...|++++|+..+++++...+..+. +.+....++... ..+.+++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998888876424445566678888889999999999888776554433 333444455442 345566777
Q ss_pred CCchH--HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 318 DPIQV--ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 318 ~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+|.+. +..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 77754 4459999999999999999999999999999999999999999999999999999999999999876543
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.2e-25 Score=203.85 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=236.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCC---------------------
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPS--------------------- 150 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~--------------------- 150 (398)
-.-+..+|+..|..+-...++-. +....+|.. ++ +++|..+|+.+-...++.-.
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 44456789999998655666555 333336666 66 99999999998877654211
Q ss_pred ----CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 151 ----GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 151 ----~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
....|..|++|-.+|.|+..+++++.|+++|+++++++|...-+|..+|.-+....+++.|..+|++++..+|.+-
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 3355889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.+|+.+|.+|.++++++.|+-.|++|++++|. +......+|.++.+.|+.++|+.+|++|..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----------------- 551 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH----------------- 551 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----------------
Confidence 99999999999999999999999999999999 999999999999999999999999999954
Q ss_pred ccccccccccCCCchH--HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 307 GDKKETEPQKVDPIQV--ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|.++ .+..|.++...+++++|+..++++-++-|+...+++.+|.+|.++|+.+.|+..|.-|..++
T Consensus 552 ----------ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 552 ----------LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred ----------cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 555554 45599999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHH
Q 015907 385 PEKVKA 390 (398)
Q Consensus 385 p~~~~~ 390 (398)
|.-.++
T Consensus 622 pkg~~i 627 (638)
T KOG1126|consen 622 PKGAQI 627 (638)
T ss_pred Cccchh
Confidence 976553
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.3e-24 Score=211.59 Aligned_cols=283 Identities=10% Similarity=0.016 Sum_probs=209.1
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++.++|+..|++++..+|+++..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..++.++...
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~-la~~l~~~g~~~~Ai~~l~~Al~l~---------P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLL-VASVLLKSKQYATVADLAEQAWLAF---------SGNSQIFALHLRTLVLM 157 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHC
Confidence 5678899999999999999999998877 7777 67 999999999999998 99999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
|++++|+..+++++...|+++.++..++ .+...|++++|+..++++++..|. .......++.++...|++++|+..|+
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998888888877765543 355666666666666666665442 22233344555566666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchH----HHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCC
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDE----AVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDP 319 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~----A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~ 319 (398)
+++..+|+ ++.++..+|.++...|++++ |+..|++++...+.... +.+....++... ..+++++..+|
T Consensus 237 ~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 237 SALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 66666665 56666666666666666654 55666555555444322 222223333332 22333445556
Q ss_pred ch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 320 IQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 320 ~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.+ ++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++.+|++...
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 54 556699999999999999999999999999998888888999999999999999999999999987543
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-24 Score=225.85 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=237.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH-----------
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA----------- 159 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~----------- 159 (398)
...+++++|+..|++++..+|++++.+.. +|.+ .| +++|+..|++++... |.+..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~l~~Al~~~---------p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGA-LGQAYSQQGDRARAVAQFEKALALD---------PHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCccchhHHHHHHHhh
Confidence 35578899999999999999999998877 8887 77 999999999999887 54321
Q ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--
Q 015907 160 ---GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE-- 234 (398)
Q Consensus 160 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-- 234 (398)
....+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 223557888999999999999999999999999999999999999999999999999999999998776655544
Q ss_pred ----------------------------------------HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 235 ----------------------------------------VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 235 ----------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
++...|++++|+..|+++++++|+ ++.+++.+|.+|...
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344679999999999999999999 999999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCch-----hhhcccccc-----------------------------------------
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDL-----SVKDGRSGD----------------------------------------- 308 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~----------------------------------------- 308 (398)
|++++|+..++++++..+..+.... ....++...
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998876665543110 000000000
Q ss_pred -ccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 309 -KKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 309 -~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
......+...|. ..+..+|.++...|++++|+..|+++++.+|+++.++..++.+|...|++++|+..+++++...|
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 000011122333 35556999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHH
Q 015907 386 EKVKALVD 393 (398)
Q Consensus 386 ~~~~~~~~ 393 (398)
+++.++..
T Consensus 669 ~~~~~~~~ 676 (1157)
T PRK11447 669 DSLNTQRR 676 (1157)
T ss_pred CChHHHHH
Confidence 98876654
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.1e-23 Score=193.41 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=228.4
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....++.++|+..|++++..+|++...+.. +|.+ .| ++.|+..++.++.... . ........+..+|.++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~~----~-~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLA-LGNLFRRRGEVDRAIRIHQNLLSRPD----L-TREQRLLALQELGQDY 117 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHcCcHHHHHHHHHHHhcCCC----C-CHHHHHHHHHHHHHHH
Confidence 3446678889999999999999998887766 7766 67 9999999999886430 0 0011235788999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-----DVFRLLGEVKYELKDYE 243 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~ 243 (398)
...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++...|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999999887653 35678899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--- 320 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (398)
+|+.+|+++++.+|+ ...++..+|.++...|++++|+..++++... +|.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------~p~~~~ 249 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQ---------------------------DPEYLS 249 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------ChhhHH
Confidence 999999999999999 8999999999999999999999999998652 233
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..+..++.+|...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++....
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 34455899999999999999999999999997754 48999999999999999999999999999987544
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=9.1e-24 Score=216.24 Aligned_cols=284 Identities=21% Similarity=0.190 Sum_probs=161.5
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
++..+|+..++.++...|.++..+.. +|.+ .| ++.|+..|..++... |.++..+..+|.++...|+
T Consensus 581 ~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 581 GQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ---------PDSALALLLLADAYAVMKN 650 (899)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCC
Confidence 34445555555555545544444444 4443 34 555555555555444 4555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+..|+++++.+|++..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++
T Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchH--HH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQV--EL 324 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 324 (398)
...|+ + ..+..++.++...|++++|+..+++++...+..+. +.+....++... ..+.+.+...|.+. +.
T Consensus 731 ~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 808 (899)
T TIGR02917 731 KRAPS-S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLN 808 (899)
T ss_pred hhCCC-c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55554 2 44455555555555555555555555444333322 222222333332 23344444555543 33
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++.++...|+ .+|+.++++++...|+++..+..+|.++...|++++|+.+|+++++.+|.++.++.++
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 37777777777 6677777777777777777777888888888888888888888888888877776654
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=1.5e-23 Score=214.67 Aligned_cols=284 Identities=20% Similarity=0.198 Sum_probs=148.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.++|++.|+.++...|.+...+.. ++.+ .| .++|...+.+++... |.+...+..++..+...|++
T Consensus 514 ~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILA-LAGLYLRTGNEEEAVAWLEKAAELN---------PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------ccchhHHHHHHHHHHHCCCH
Confidence 3444444444444444444444333 3333 33 444444444444444 44444444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++.
T Consensus 584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCc-hHHHHH
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPI-QVELLL 326 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l 326 (398)
.+|+ +..++..++.++...|++++|+..++.+....+..+. +.+....++... ..+..++...|. .....+
T Consensus 664 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 742 (899)
T TIGR02917 664 LKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKL 742 (899)
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHH
Confidence 5555 4555555555555555555555544444333222211 111112222222 223333333333 233446
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++..|+++.++.+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6677777777777777777777777777777777777777777777777777777777776666554
No 12
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-23 Score=187.33 Aligned_cols=270 Identities=15% Similarity=0.121 Sum_probs=233.4
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHH---HHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGL---VFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~---a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
+.+.....++.+..+++.+++..+|-++..+.+.++-+........+|.. .+... |..+..|+..|.-
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---------P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---------PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---------CCCCcchhhHHHH
Confidence 33344566788899999999999999999987767744223333333433 34444 8888999999999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
|...|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..++++.-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
+|.+|+.+.|. ++-++..+|.+.+..+.|.+|..+|+.++...+.... -...-.-.+.++|
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~------------------e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN------------------EKIFWEPTLNNLG 462 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc------------------cccchhHHHHhHH
Confidence 99999999999 9999999999999999999999999998855443311 0011112355699
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+++.|+++|.+++.+.|++.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 13
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.5e-24 Score=195.35 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----------------------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI----------------------- 187 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------- 187 (398)
..+|+..|.+.-... ++...+...+|..|++.++|++|..+|+.+-++
T Consensus 335 ~~~A~~~~~klp~h~---------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH---------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHhhHHhc---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH
Confidence 556666666633333 667788899999999999999999999988554
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 188 -----------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 188 -----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+|+.|+.|..+|.||..+++++.|+++|++++.++|....+|..+|.=+....+++.|..+|+.++..+
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH--HHHHHHHhCC
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL--LLGKAYSDGG 334 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g 334 (398)
|. +..+|+++|.+|.++++++.|.-.|++| +.++|..... .+|.++.+.|
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA---------------------------~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKA---------------------------VEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhh---------------------------hcCCccchhHHhhhhHHHHHhh
Confidence 99 9999999999999999999999999999 5577765443 4999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 335 RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 335 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+.++|+.+|++|+.++|.++-..+..|.++..++++++|...+++..++.|+..-++.-
T Consensus 538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776653
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=9.7e-23 Score=211.31 Aligned_cols=257 Identities=14% Similarity=0.071 Sum_probs=209.2
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH----
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE---- 165 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la---- 165 (398)
....++.++|+..|++++..+|+++..+.. +|.+ .| +++|+..|++++.+. |.+..++..++
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~-Lg~~~~~~g~~~eA~~~y~~aL~~~---------p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLG-LGDVAMARKDYAAAERYYQQALRMD---------PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHH
Confidence 345678899999999999999999888766 7777 77 999999999999988 66665554443
Q ss_pred --------------------------------------HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 166 --------------------------------------LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 166 --------------------------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
..+...|++++|+..|+++++.+|+++.+++.+|.+|...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 445567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH-----------------------------------
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS----------------------------------- 252 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------- 252 (398)
+++|+..++++++..|.++..++.++..+...+++++|+..++++
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 999999999999888888888877777777777777776665542
Q ss_pred -----HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHH
Q 015907 253 -----TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELL 325 (398)
Q Consensus 253 -----l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 325 (398)
+...|. ++..+..+|.++...|++++|+..|++++. .+|. +++..
T Consensus 591 eA~~~l~~~p~-~~~~~~~La~~~~~~g~~~~A~~~y~~al~---------------------------~~P~~~~a~~~ 642 (1157)
T PRK11447 591 EAEALLRQQPP-STRIDLTLADWAQQRGDYAAARAAYQRVLT---------------------------REPGNADARLG 642 (1157)
T ss_pred HHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------hCCCCHHHHHH
Confidence 223566 667777788888888888888888877755 3343 55666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
++.+|...|++++|+..++++++..|+++.++..+|.++...|++++|+..|++++...|+++
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 899999999999999999999998999999999999999999999999999999998876654
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=2.5e-22 Score=200.20 Aligned_cols=248 Identities=14% Similarity=0.035 Sum_probs=209.7
Q ss_pred HHHhhcchhhcCCC--chhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHH
Q 015907 103 EIKEFGPIDYDAPI--ETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTR 177 (398)
Q Consensus 103 A~~~~~~~~~~~p~--~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 177 (398)
+...+..++...|. ++..++. +|.+ .| ..+|+..|.+++... |+.. ....+|..+...|++++|
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~-LG~~l~~~~~~eAi~a~~~Al~~~---------Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNR-LAKCYRDTLPGVALYAWLQAEQRQ---------PDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHH-HHHHHHhCCcHHHHHHHHHHHHhC---------CchH-HHHHHHHHHHHCCCHHHH
Confidence 44555566667777 7777777 8888 55 888999899988877 7643 356667777889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 257 (398)
+..|++++...|. ...+..+|.++...|++++|+.+++++++..|.....+..++......|++++|+..|+++++.+|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998777555 456788899999999999999999999999998887777777777778999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCC
Q 015907 258 DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGR 335 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~ 335 (398)
+ ..++..+|.++.+.|++++|+..|++++. .+|. .++..+|.++...|+
T Consensus 608 ~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~---------------------------l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 608 S--ANAYVARATIYRQRHNVPAAVSDLRAALE---------------------------LEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------hCCCCHHHHHHHHHHHHHCCC
Confidence 5 78899999999999999999999999865 3344 456669999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+.
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 99999999999999999999999999999999999999999999999999886654
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-22 Score=173.73 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.-..|.-|...++.++|+.+|+++++++|....+|..+|.-|..+++...|+..|++|++++|.+-.+|+.||+.|..++
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 34467778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+.-|+-+|++++...|. +...|..||.+|.+.++.++|+.+|.++... .....
T Consensus 413 Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~-------------------------~dte~ 466 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL-------------------------GDTEG 466 (559)
T ss_pred chHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc-------------------------cccch
Confidence 999999999999999999 9999999999999999999999999998662 22234
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLIS-------SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++..+|.+|.+.++..+|..+|++.++ ..|....+...|+.-+.+.+++++|..+..+++.-++...++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eea 543 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEA 543 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHH
Confidence 6777799999999999999999999998 456667788889999999999999999999888876654443
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.91 E-value=6.1e-22 Score=174.92 Aligned_cols=229 Identities=12% Similarity=0.041 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
.+.++..+.+++.... ...+..+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++
T Consensus 42 ~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 42 QEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6777888888875431 00124467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|+..|+++++++|++..++.++|.++...|++++|+..|++++..+|+ ++..... ..+....+++++|+..+.+....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPYRALW-LYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHccCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998 7642222 22345678899999999765431
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH--HHHHH----HHHHhCCCChHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA--VAVYD----RLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~----~al~~~p~~~~~~~~la~~~ 364 (398)
.++ +.+. .+.++...|++.++ +..+. ..+++.|...++|+++|.++
T Consensus 195 --------------------------~~~-~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 195 --------------------------LDK-EQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred --------------------------CCc-cccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 122 2232 34555556665443 32222 22355677788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC-CChHHHHHh
Q 015907 365 KENGKVGDAERMFIQARFFAP-EKVKALVDQ 394 (398)
Q Consensus 365 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 394 (398)
..+|++++|+.+|++++..+| ++.+....+
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999997 666655543
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=8.7e-22 Score=196.38 Aligned_cols=252 Identities=8% Similarity=-0.021 Sum_probs=225.0
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
++..+|+..|.+.+...|+... .++++.. .| ++.|+..|+++.... |. ...++.+|.++...|+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~--~L~lA~al~~~Gr~eeAi~~~rka~~~~---------p~-~~a~~~la~all~~Gd 557 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQ--HRAVAYQAYQVEDYATALAAWQKISLHD---------MS-NEDLLAAANTAQAAGN 557 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHH--HHHHHHHHHHCCCHHHHHHHHHHHhccC---------CC-cHHHHHHHHHHHHCCC
Confidence 5777899999999999997654 3335553 77 999999999986544 44 3457889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|++++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999888888887778889999999999999999996 8999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
.++|+ ++.++.++|.++...|++++|+..|+++++.. ++...++.++|.++...
T Consensus 637 ~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-------------------------P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 637 ELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-------------------------PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHC
Confidence 99999 99999999999999999999999999996632 22235667799999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
|++++|+.+|++++++.|++..+....|.+.....+++.|.+.+.++..++|+..
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999999999999999999999865
No 19
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=9.3e-22 Score=165.26 Aligned_cols=303 Identities=13% Similarity=0.138 Sum_probs=256.7
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP 155 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p 155 (398)
...+....++.......++++..|+..|..++..+|++..++.. .+.. .| ...|+.-+.+++.+. |
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifr-RaT~yLAmGksk~al~Dl~rVlelK---------p 103 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFR-RATVYLAMGKSKAALQDLSRVLELK---------P 103 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHH-HHHHHhhhcCCccchhhHHHHHhcC---------c
Confidence 34566778888888889999999999999999999999888776 5555 78 888999999999999 9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---------------ALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
+...+....|.+++.+|++++|+..|..++..+|.+.. .+......+...|++..|+++..++++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999996532 233344456677999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc-h
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD-L 299 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 299 (398)
+.|.+...+...+.||...|++..|+..++.+-++..+ +.+.++.+..+++..|+.+.++...++++++.+...... .
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999988877764410 0
Q ss_pred hhhccc-----------ccc-------ccccccccCCCchHHH------HHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 300 SVKDGR-----------SGD-------KKETEPQKVDPIQVEL------LLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 300 ~~~~~~-----------~~~-------~~~~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
+..+.. .+. +..+..+..+|....+ .+..|+..-+++.+|+..+.+++..+|++..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 111100 011 2233445566653222 2788999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++...+..|.....|+.|+..|++|.+.+|++..+.-.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999999999999999877654
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-21 Score=171.75 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=204.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| .-.|...|..+|.+. |.+...|..++.+|...++.++-...|.++..++|+++++|+..|.+++-+++
T Consensus 339 ~g~~~~a~~d~~~~I~l~---------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD---------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred cCCchhhhhhHHHHHhcC---------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 67 888999999999999 88888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.-|++++.++|++...+..++.+.+++++++++...|+.++...|. .++++...|.++..+++++.|++.|..+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS-DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
+.+-+.... +-.+ ..++...|.+.. -.+++.+|+.+++++++++|....++..+|.+..+
T Consensus 489 i~LE~~~~~------------------~~v~-~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 489 IELEPREHL------------------IIVN-AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ 549 (606)
T ss_pred Hhhcccccc------------------cccc-chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 775443200 0011 122333333332 23899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCC
Q 015907 367 NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~~~p~ 386 (398)
+|+.++|+++|++++.+...
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.2e-21 Score=168.25 Aligned_cols=210 Identities=16% Similarity=0.236 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.++...|..++-.|++..|...|+.++.++|.+...|..+|.+|....+.++-...|.++..++|.++++|+..|.+++-
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 34444555555666666666666666777666666677777777777777777777777777777777777777777777
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
++++++|+..|++++.++|+ +..++..++.+.+++++++++...|+.+.+.+|..
T Consensus 407 L~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------------------ 461 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------------------------ 461 (606)
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------------------
Confidence 77777777777777777777 77777777777777777777777777776644432
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIIL-KENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.+++...|.++..++++++|++.|..++++.|. ++..+...|.+. ...+++..|+.++.+|++++|....++
T Consensus 462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHH
Confidence 356666788888888888888888888888777 555555555443 344777788888888888888776666
Q ss_pred HHh
Q 015907 392 VDQ 394 (398)
Q Consensus 392 ~~l 394 (398)
..+
T Consensus 541 ~tl 543 (606)
T KOG0547|consen 541 ETL 543 (606)
T ss_pred HHH
Confidence 544
No 22
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=181.46 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=199.3
Q ss_pred Cchhhhhhhcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH
Q 015907 116 IETEKKTIGLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 116 ~~~~~~~~~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 193 (398)
++++.+..|.-++ .| +.+|+..|+.++..+ |.+..+|..||.++.+.++-..|+..++++++++|++.+
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd---------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle 354 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQD---------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE 354 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhC---------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH
Confidence 3555666666566 77 999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL-------LGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLR 265 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 265 (398)
++..||..|...|.-.+|+.++.+.+...|........ ...-......+..-.+.|-.+....|. .++++..
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~ 434 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQS 434 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHh
Confidence 99999999999999999999999999988754221110 000001112244556677777777773 3899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVY 343 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~ 343 (398)
.||.+|...|+|++|+++|+.+ +...|.+..+| ||-.+....+.++|+..|
T Consensus 435 ~LGVLy~ls~efdraiDcf~~A---------------------------L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAA---------------------------LQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHH---------------------------HhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 9999999999999999999999 44677776555 999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++|+++.|.+.++++++|.+|+.+|.|++|+.+|-.||.+.+.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999998765
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=5.5e-21 Score=183.39 Aligned_cols=216 Identities=9% Similarity=-0.054 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc---------cHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN---------VLQTRLKKYEETLSISPKDSTALEGAAVT 201 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 201 (398)
+..|+..|++++.++ |+++.+|..+|.++...+ ++++|+..++++++++|+++.++..+|.+
T Consensus 277 ~~~A~~~~~~Al~ld---------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~ 347 (553)
T PRK12370 277 LQQALKLLTQCVNMS---------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999999 999999999998877543 48999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|. ++..+..++.++...|++++|+
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8877777777788899999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
.++++++...+ .+....+.++|.++...|++++|...+.++....|....++..++
T Consensus 427 ~~~~~~l~~~~------------------------p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~ 482 (553)
T PRK12370 427 RLGDELRSQHL------------------------QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLY 482 (553)
T ss_pred HHHHHHHHhcc------------------------ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99988755211 112345567999999999999999999999998999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 015907 362 IILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~ 382 (398)
.+|...|+ +|...+++.++
T Consensus 483 ~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 483 AEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHhccHH--HHHHHHHHHHH
Confidence 99998885 66666666554
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.3e-20 Score=174.77 Aligned_cols=226 Identities=15% Similarity=0.084 Sum_probs=200.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLA 203 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 203 (398)
.| ++.|+..|.+++..+ |.+..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|.
T Consensus 48 ~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVD---------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred cCChHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 57 999999999999998 9999999999999999999999999999998854333 357889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH-----HHHHHHHHHHHHcCCch
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF-----EVLRGLTNALLAAKKPD 278 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~la~~~~~~~~~~ 278 (398)
..|++++|+..|+++++..|.+..++..++.++...|++++|++.+++++...|. +. ..+..+|.++...|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999999999999998876 42 25678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGY 357 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 357 (398)
+|+.+|+++++.. .+....+..+|.++...|++++|+..++++++.+|.+ ..++
T Consensus 198 ~A~~~~~~al~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 198 AARALLKKALAAD-------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHHHHHHHHhHC-------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 9999999986632 2223466679999999999999999999999988876 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..++.+|...|++++|+..+++++...|+...
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 89999999999999999999999999998744
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.2e-20 Score=187.56 Aligned_cols=289 Identities=14% Similarity=0.077 Sum_probs=216.9
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
....++..+|+..|++++...|.++..... ++.+ .| .++|+..+.+++... |.++. +..+|.++.
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-la~~l~~~g~~~eA~~~l~~~l~~~---------P~~~~-~~~la~~l~ 127 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRG-LILTLADAGQYDEALVKAKQLVSGA---------PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHH-HHHHHHHHH
Confidence 345677889999999999999998887765 6666 67 999999999999988 99999 999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH----------------------------------
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL---------------------------------- 215 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---------------------------------- 215 (398)
..|++++|+..|+++++..|+++.++..++.++...+..++|+..+
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 9999999999999999999999999999998887777766555433
Q ss_pred ------------HHHHHhCCCCHHH-------HHH-HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 216 ------------QDLAKEKPSDPDV-------FRL-LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 216 ------------~~al~~~p~~~~~-------~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
+++++..|.++.. ... ++ .+...|++++|+..|+++++..|.....+...++.++...|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 3444332322211 111 33 34577899999999999998864312234444688999999
Q ss_pred CchHHHHHHHHHHHHhcCCCC------Cc---hhhhcccccc--ccccccccC-------------CCch----HHHHHH
Q 015907 276 KPDEAVQFLLASRERLSTGKS------DD---LSVKDGRSGD--KKETEPQKV-------------DPIQ----VELLLG 327 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~------~~---~~~~~~~~~~--~~~~~~~~~-------------~~~~----~~~~la 327 (398)
++++|+.+|++++...+..+. .. .....++..+ ..+...... .|.+ +...++
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 999999999887764433311 11 1112233332 112222222 2332 345589
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..+++.+
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997766543
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=2e-22 Score=177.73 Aligned_cols=256 Identities=20% Similarity=0.177 Sum_probs=119.0
Q ss_pred HHHHHHHHHhHHHHHHhhcchh-hc-CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPID-YD-APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~-~~-~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
.+.-....+++++|++++.+.+ .. .|+++..+.. ++.+ .| .+.|+..|++++..+ +..+..+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-~a~La~~~~~~~~A~~ay~~l~~~~---------~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRL-LADLAWSLGDYDEAIEAYEKLLASD---------KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc---------ccccccccc
Confidence 3444557788899999996654 44 4778887777 7765 67 999999999999888 777777777
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccC
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--PSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 241 (398)
++.. ...+++++|+..++++.+.. .++..+..+..++...++++++...++++.... +.++.+|..+|.++...|+
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 7777 79999999999999998876 457778888899999999999999999987655 6778899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+++|+.+|+++++.+|+ +..++..++.++...|+++++...+....+..+ ....
T Consensus 162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-------------------------~~~~ 215 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAP-------------------------DDPD 215 (280)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-------------------------TSCC
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-------------------------CHHH
Confidence 99999999999999999 999999999999999999998888877766322 1234
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.+..+|.++..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|..++++++..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56669999999999999999999999999999999999999999999999999999998753
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-20 Score=164.00 Aligned_cols=203 Identities=16% Similarity=0.162 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC----------------------------------CHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK----------------------------------DSTALEGAAV 200 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----------------------------------~~~~~~~la~ 200 (398)
|.....-...|.+.+...++++|+..|+...+.+|- .++....+|+
T Consensus 259 ~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaN 338 (559)
T KOG1155|consen 259 PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIAN 338 (559)
T ss_pred CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehh
Confidence 344444444555555555555555555555555553 3444556677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.|...++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|++|++++|. +..+|++||.+|.-++-+.=|
T Consensus 339 YYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHH
Confidence 7888899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
+-+|+++.. ..++....|..+|.||.+.++.++|+.+|.+++........+++.+
T Consensus 418 LyYfqkA~~-------------------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 418 LYYFQKALE-------------------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred HHHHHHHHh-------------------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999965 3333344555599999999999999999999999988889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 015907 361 GIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|.+|.++++..+|..+|++.++.
T Consensus 473 akLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999983
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.6e-20 Score=180.28 Aligned_cols=247 Identities=11% Similarity=-0.054 Sum_probs=206.8
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh------------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
....+|+..|++++..+|+++..+.. ++.+ .+ ++.|...+++++.++ |+++.++..+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~-La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld---------P~~~~a~~~l 344 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCA-LAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD---------HNNPQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHH-HHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---------CCCHHHHHHH
Confidence 44678999999999999999887654 5543 23 689999999999999 9999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877777777888999999
Q ss_pred HHHHHHHHHhhC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--h
Q 015907 245 SAAAYRVSTMVS-KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--Q 321 (398)
Q Consensus 245 A~~~~~~al~~~-p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 321 (398)
|+..+++++... |+ ++.++..+|.++...|++++|...+.+... ..|. .
T Consensus 425 A~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---------------------------~~~~~~~ 476 (553)
T PRK12370 425 AIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEIST---------------------------QEITGLI 476 (553)
T ss_pred HHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---------------------------ccchhHH
Confidence 999999999886 66 888999999999999999999999977633 2233 3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
....++..|...|+ +|...+++.++.......-......+|.-.|+.+.+..+ +++.+.+.
T Consensus 477 ~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 34448888888884 777777776654333332333488888889998888887 77665543
No 29
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=8.9e-21 Score=158.43 Aligned_cols=241 Identities=14% Similarity=0.059 Sum_probs=220.5
Q ss_pred hhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH
Q 015907 121 KTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALE 196 (398)
Q Consensus 121 ~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 196 (398)
|...+|.| +| +..|...+...+... ..++.+..++.+|.+..+...|+..|.+.++..|.+...+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~----------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF----------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC----------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 44557777 78 999999999988665 45678889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
.+++++..++++++|.++|+.+++.+|.+.++.--+|.-|+..++++-|+.+|++++++.-. +++.+.++|.+.+..++
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 99999999999999999999999999999999988999999999999999999999999988 99999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHH
Q 015907 277 PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRG 356 (398)
Q Consensus 277 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 356 (398)
++-++..|++++...... -...++|+++|.+....|++.-|..+|+-++..++++.++
T Consensus 374 ~D~~L~sf~RAlstat~~----------------------~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQP----------------------GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred hhhhHHHHHHHHhhccCc----------------------chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 999999999997754322 2235899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+.+||.+-.+.|+.++|..++..+-...|+-.+...|+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999999999999999987776654
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=4.8e-20 Score=158.01 Aligned_cols=205 Identities=20% Similarity=0.185 Sum_probs=185.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+.....++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
++...|++++|+..|++++... +. ....+..+|.++...|++++|...+.+++...+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------- 166 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-PARSLENAGLCALKAGDFDKAEKYLTRALQIDP-------------------- 166 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------------
Confidence 9999999999999999999854 34 567899999999999999999999999866322
Q ss_pred ccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 313 EPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
.....+..+|.++...|++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 167 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 167 -----QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 22345667999999999999999999999999898999999999999999999999999888776654
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=2e-19 Score=168.55 Aligned_cols=307 Identities=17% Similarity=0.154 Sum_probs=244.5
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP 155 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p 155 (398)
...+....+..+.....+++.++|.+++.++++.+|.++.++.. +|.+ .| .+.+..++-.|..++ |
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~t-L~~IyEqrGd~eK~l~~~llAAHL~---------p 204 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYT-LGEIYEQRGDIEKALNFWLLAAHLN---------P 204 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHH-HHHHHHHcccHHHHHHHHHHHHhcC---------C
Confidence 45566777777777778899999999999999999999999999 9999 88 999999999999999 9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-----DVFR 230 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~ 230 (398)
.+...|..++....+.|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|... ..-.
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~ 284 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR 284 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998321 2233
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------------
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS------------- 296 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 296 (398)
..+..+...++.+.|++.++.++....+ ...+.+..++.++.....++.|...+......-....+
T Consensus 285 ~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 285 RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 4567778888889999999999984322 14456778899999999999999988665541111100
Q ss_pred -----------Cchhh---h--cccccc----cc----c-ccc-ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 297 -----------DDLSV---K--DGRSGD----KK----E-TEP-QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 297 -----------~~~~~---~--~~~~~~----~~----~-~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
.++.. . +-.+.. +. + ... ...+..+.+..++.+|...|++.+|+.+|..+....
T Consensus 365 ~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred cccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 01111 1 111111 00 0 000 011112445559999999999999999999998755
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 351 PN-DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 351 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+. +..+|+.+|.||..+|.+++|++.|++++.++|++.++.+.+.+
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 43 36799999999999999999999999999999999999887653
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=9.2e-20 Score=181.37 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=226.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
.-.++.++|++++.++....|.....+.. ++.. .| +.+|...|++++.+. |.++.++..++.++..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~-lA~~~~~~g~~~~A~~~~~~al~~~---------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAA-VAVAYRNLKQWQNSLTLWQKALSLE---------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 35678889999999998877777766665 6655 77 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH----
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA---- 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---- 246 (398)
.|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..+.|+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999887777665544
Q ss_pred ------------------------------------------HHHHHHHhhC---CCCCH---HHHHHHHHHHHHcCCch
Q 015907 247 ------------------------------------------AAYRVSTMVS---KDINF---EVLRGLTNALLAAKKPD 278 (398)
Q Consensus 247 ------------------------------------------~~~~~al~~~---p~~~~---~~~~~la~~~~~~~~~~ 278 (398)
..++.+++.. |...+ .++.....++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4444444332 22111 12222123446779999
Q ss_pred HHHHHHHHHHHHhcCCCC------Cchhhhcccccc--ccccccccCCCch------HHHHHHHHHHhCCChHHHHHHHH
Q 015907 279 EAVQFLLASRERLSTGKS------DDLSVKDGRSGD--KKETEPQKVDPIQ------VELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
+|+..|+++++..+..|. +.+....++.+. ..+.+.+..+|.. ....++.++...|++++|+..++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999887765433332 234444455444 2334444444432 34447778899999999999999
Q ss_pred HHHHhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 345 RLISSYPN---------------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 345 ~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++....|. ...++..++.++...|++++|+..+++++...|+++.++..+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA 400 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA 400 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99988763 1357788999999999999999999999999999998887753
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2e-19 Score=158.90 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=178.2
Q ss_pred HHHHHhhcchhhcCCCc----hhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 101 AEEIKEFGPIDYDAPIE----TEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~----~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
+.++..+.+++...|.. +..+.. +|.+ .| .+.|+..|.+++.+. |+++.+|+.+|.++...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~-~g~~~~~~g~~~~A~~~~~~Al~l~---------P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYE-RGVLYDSLGLRALARNDFSQALALR---------PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHCC
Confidence 34566666677544422 333444 7777 77 999999999999999 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
++++|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..|.++
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999874222 223345678899999999887
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh
Q 015907 253 TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD 332 (398)
Q Consensus 253 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 332 (398)
+...+. . .|. .+.++...|+..++ ..+..+.+.+...+. +.....++++++|.++..
T Consensus 192 ~~~~~~-~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~------------------l~~~~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 192 YEKLDK-E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTE------------------LAERLCETYFYLAKYYLS 248 (296)
T ss_pred HhhCCc-c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHH------------------HHHHHHHHHHHHHHHHHH
Confidence 755433 2 222 45666677887665 355554443322211 111223578889999999
Q ss_pred CCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Q 015907 333 GGRVSDAVAVYDRLISSYP-NDFRGYLAKGIILKENGK 369 (398)
Q Consensus 333 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~ 369 (398)
.|++++|+.+|+++++.+| ++++..+.+..+....++
T Consensus 249 ~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 249 LGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999997 666666666665554433
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.9e-19 Score=168.61 Aligned_cols=306 Identities=14% Similarity=0.094 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCC--------------
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLP-------------- 149 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~-------------- 149 (398)
+-.++-+...+++..|+.+|+.++..+|.-.....+|+|.| +| .+.|+..|.+++.+++..-
T Consensus 168 lGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 168 LGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc
Confidence 33445555778888999999998888888777777778887 66 7888888888887764200
Q ss_pred --------------CCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 015907 150 --------------SGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 150 --------------~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~ 212 (398)
.-...+.+|.++..++.-++..|+|..+..+...++...-.. .+.++.+|.+|..+|+|++|.
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 011235666666666666677777777777777666654322 345777777777777777777
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC----CchHHHHHHHHH
Q 015907 213 SLLQDLAKEKPSD-PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK----KPDEAVQFLLAS 287 (398)
Q Consensus 213 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a 287 (398)
.+|.++++.+|++ .-.++.+|.+|...|+++.|+.+|++++...|+ +.++...||.+|...+ ..+.|..++.++
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 7777777777666 556667777777777777777777777777777 6777777777776554 345566666555
Q ss_pred HHHhcCCCCCchhh-----------hcccccc--ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh-----
Q 015907 288 RERLSTGKSDDLSV-----------KDGRSGD--KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS----- 349 (398)
Q Consensus 288 ~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 349 (398)
.+..+.+.++.+.. .+.-+.. ..+......-|..+..++|..++..|++.+|...|..++..
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 55443332211111 1100000 11222223345556666777777777777777777766654
Q ss_pred CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 350 YPN-----DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 350 ~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+++ +....+++|.++..+++++.|.+.|...+...|...++++.+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 111 122466777777777777777777777777777776666655
No 35
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=7.1e-19 Score=140.61 Aligned_cols=207 Identities=17% Similarity=0.077 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+...+|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 238 ELKDYEGSAAAYRVSTMV--SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
.+|++++|...|++++.. .|. ...++.++|.|..+.|+++.|..+|+++++..+..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--------------------- 172 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--------------------- 172 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---------------------
Confidence 999999999999999974 344 56799999999999999999999999996633221
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
......++..+...|++..|..+++......+-..+.+.....+-...|+.+.+-.+=.+.....|...+.
T Consensus 173 ----~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 173 ----PPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred ----ChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 23444599999999999999999999998888888888888889999999999999988888999988764
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=7.7e-19 Score=140.41 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
..+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|+ +.+++++.|..+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3578889999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+.+|++++|...|++++.. | .-..|.+.+.++|.|..+.|+.+.|..+|+++++.+|
T Consensus 114 C~qg~~~eA~q~F~~Al~~-P----------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-P----------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-C----------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 9999999999999998651 1 1234567888899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 352 NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 352 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+.+.....++..+++.|++-.|..++++.....+-..+
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 99999999999999999999999999988776654443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=8.3e-19 Score=152.81 Aligned_cols=265 Identities=15% Similarity=0.119 Sum_probs=224.3
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc---HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG---VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g---~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
+-.....+.++.|++++......+..-..+-...+-.+ +| +..|..+-..++.++ .-++.+..+.
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---------ryn~~a~~nk 496 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---------RYNAAALTNK 496 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---------ccCHHHhhcC
Confidence 33344566777787777655444332222211112222 44 788889999999888 7888899999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
|.+.+..|++++|.+.|.+++..+..-.++++++|..+..+|+.++|+++|-++-.+--++.++++.++.+|..+.+..+
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 99999999999999999999999888899999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QV 322 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 322 (398)
|++++-++..+-|+ ++.++..||.+|-+.|+-.+|.+++-... ...|. +.
T Consensus 577 aie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsy---------------------------ryfp~nie~ 628 (840)
T KOG2003|consen 577 AIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSY---------------------------RYFPCNIET 628 (840)
T ss_pred HHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcc---------------------------cccCcchHH
Confidence 99999999999999 99999999999999999999999985543 34444 45
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.-|+|..|....-+++|+.+|+++--+.|+...-....+.|+.+.|+|+.|.+.|+..-...|.+.+.+-
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 5679999999999999999999999999999888889999999999999999999999999999877543
No 38
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-18 Score=145.89 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=193.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 241 (398)
..+|.||++.|.+.+|...|+..++..| .++.+..++.+|....++..|+..+...++..|.+...+..++.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 5689999999999999999999999875 678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+++|.++|+.+++.+|. +.++...+|.-|+-.++++-|+.+|++.++ +.....+
T Consensus 306 ~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLq-------------------------mG~~spe 359 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQ-------------------------MGAQSPE 359 (478)
T ss_pred HHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHH-------------------------hcCCChH
Confidence 99999999999999999 999999999999999999999999998877 4555667
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+.++|.|+...++++-++..|++++....+ -.++|+++|.+....|++.-|...|+-++..+|++.++++|+.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 8888999999999999999999999986442 3789999999999999999999999999999999999999874
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-18 Score=162.34 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-STALEGAAVTLAELGDYT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~ 209 (398)
++.|...|..++... |++..+++..|.+.+..++|..|+.+|.+++..+|.. ++....+|.|+..+|+.+
T Consensus 146 ~~~A~a~F~~Vl~~s---------p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS---------PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE 216 (1018)
T ss_pred HHHHHHHHHHHHhhC---------CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh
Confidence 456666666666666 7777777777777777777777777777777776654 445666677777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
.|+..|.++++++|.+..++..||.+-....+ +..+...+.++...+|. +|.++..|+.-++..|+|..+..+...
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 77777777777777666666666665554433 45666666666666766 677777777777777777766666666
Q ss_pred HHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHH
Q 015907 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGYLAKGIILK 365 (398)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 365 (398)
++..... ..--.+.++++|.+|+.+|++++|..+|.+++..+|++ .-.++.+|++|.
T Consensus 296 ai~~t~~----------------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 296 AIKNTEN----------------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHhhhh----------------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 5542211 11112445556666666666666666666666666655 455666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..|+++.|+..|++++...|++.+.+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHH
Confidence 66666666666666666666665543
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=6.9e-18 Score=144.59 Aligned_cols=178 Identities=17% Similarity=0.129 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|. +..++..+|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
+...|++++|+..+.+++.... .......+..+|.++...|++++|...+.+++...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL-----------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc-----------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998865211 11123456669999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
|++...+..+|.++...|++++|+.++++++...|+++..+.
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999888877654
No 41
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=3.5e-17 Score=144.31 Aligned_cols=245 Identities=12% Similarity=0.006 Sum_probs=201.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc-cHHHH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN-VLQTR 177 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A 177 (398)
++.++...|+.++..... .+.|+..+.+++.++ |.+..+|..++.++...| +++++
T Consensus 35 ~~~~a~~~~ra~l~~~e~--------------serAL~lt~~aI~ln---------P~~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 35 EFREAMDYFRAVYASDER--------------SPRALDLTADVIRLN---------PGNYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred HHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHHcchhHHHH
Confidence 444566666666554432 456667788999999 999999999999999998 68999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDY--TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+.++++++..+|++..+|...+.++...|+. ++++.++.++++.+|++..+|...+.++...|+++++++++.++|+.
T Consensus 92 L~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 92 LDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 78899999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHc---CCc----hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHH
Q 015907 256 SKDINFEVLRGLTNALLAA---KKP----DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGK 328 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 328 (398)
+|. +..+|...+.++... |.+ ++++.+..+++... ++...+|.+++.
T Consensus 172 d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-------------------------P~N~SaW~Yl~~ 225 (320)
T PLN02789 172 DVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-------------------------PRNESPWRYLRG 225 (320)
T ss_pred CCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-------------------------CCCcCHHHHHHH
Confidence 999 999999999998776 333 46777777775522 223467777888
Q ss_pred HHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHhhCCC
Q 015907 329 AYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG------------------KVGDAERMFIQARFFAPE 386 (398)
Q Consensus 329 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~ 386 (398)
++.. .++..+|+..+.+++...|.++.++..|+.+|.... ..++|..++...-+.||=
T Consensus 226 ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 226 LFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred HHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 8877 456778999999999999999999999999998643 236788888887666665
Q ss_pred ChHHHH
Q 015907 387 KVKALV 392 (398)
Q Consensus 387 ~~~~~~ 392 (398)
...-|.
T Consensus 306 r~~yw~ 311 (320)
T PLN02789 306 RRNYWA 311 (320)
T ss_pred HHHHHH
Confidence 444443
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=1.4e-19 Score=159.58 Aligned_cols=227 Identities=17% Similarity=0.150 Sum_probs=112.6
Q ss_pred hc-HHHHHHHHHHHH-hc-cCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 015907 129 IG-VGVAVVIFGLVF-AL-GDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL 205 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~-~~-~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 205 (398)
.| ++.|..++...+ .. . |.++..|..+|......++++.|+..|++++..++.++..+..++.+ ...
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~---------~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAP---------PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 66 889999885543 33 3 77888999999999999999999999999999999999888888888 799
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
+++++|+.++.++.+..+ ++..+..+..++...++++++...++++.... +. ++.+|..+|.++...|++++|+.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-SARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T--HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988664 46777788889999999999999999987654 55 788999999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
|+++++ .+|. ++...++.++...|+++++...+.......|.++..+..+|
T Consensus 169 ~~~al~---------------------------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 169 YRKALE---------------------------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp HHHHHH---------------------------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred HHHHHH---------------------------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999966 3444 45556999999999999999999999888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 362 IILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++..+|++++|+.+|++++..+|+++.++..+
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~ 254 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY 254 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred HHhcccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999887754
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.2e-18 Score=154.04 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=198.1
Q ss_pred cchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHH
Q 015907 108 GPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEE 183 (398)
Q Consensus 108 ~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 183 (398)
.+++..+|..+..|.. +|.. +| ..+|..+|.++..++ |....+|...|..+...|+.++|+.+|..
T Consensus 302 h~LV~~yP~~a~sW~a-Vg~YYl~i~k~seARry~SKat~lD---------~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFA-VGCYYLMIGKYSEARRYFSKATTLD---------PTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred HHHHHhCCCCCcchhh-HHHHHHHhcCcHHHHHHHHHHhhcC---------ccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 4678899999998877 7776 88 999999999999999 99999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----
Q 015907 184 TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---- 259 (398)
Q Consensus 184 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 259 (398)
+-++.|..-.....+|.-|..++++.-|..+|.+++.+.|.++-++..+|.+.+..+.|.+|..+|+.++..-+..
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999543321
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChH
Q 015907 260 --NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVS 337 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 337 (398)
-...+.+||.++.+.+.+++|+.+|++++... ....+.+..+|.+|..+|+++
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-------------------------~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-------------------------PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-------------------------CCchhHHHHHHHHHHHhcChH
Confidence 12358999999999999999999999996622 222345556999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 338 DAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 338 ~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
.|++.|.+++.+.|++..+--.|+.+...
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999997776666655443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.81 E-value=4.5e-17 Score=150.97 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=213.7
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChH-HHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE-AGVVNKELSEE 169 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~-~~~~~la~~~~ 169 (398)
..++++..|.+.+....+..|+....+.+ .+.. .| .+.|..++.++.... |... .+....+.++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~ll-aA~aa~~~g~~~~A~~~l~~a~~~~---------p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIK-AAEAAQQRGDEARANQHLEEAAELA---------GNDNILVEIARTRILL 164 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CcCchHHHHHHHHHHH
Confidence 36678889999998888877765544444 4444 67 999999999998766 6664 45556799999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHccCHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR----LLGEVKYELKDYEGS 245 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A 245 (398)
..|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+....++..+. ....-+...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999987554443321 222222344555566
Q ss_pred HHHHHHHHhhCC----CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc--hhhhcccccc-------cccc
Q 015907 246 AAAYRVSTMVSK----DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD--LSVKDGRSGD-------KKET 312 (398)
Q Consensus 246 ~~~~~~al~~~p----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~-------~~~~ 312 (398)
.+.+..+....| + ++..+..++..+...|++++|+..++++++..+...... .......... ..++
T Consensus 245 ~~~L~~~~~~~p~~~~~-~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRH-NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 678888888777 4 789999999999999999999999999988777665321 2221111111 3345
Q ss_pred ccccCCCchH--HH--HHHHHHHhCCChHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 313 EPQKVDPIQV--EL--LLGKAYSDGGRVSDAVAVYD--RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 313 ~~~~~~~~~~--~~--~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
..+...|.++ .+ .+|.++.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.+++++++..
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566777766 44 39999999999999999999 57778887655 559999999999999999999998764
No 45
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=2.9e-17 Score=144.85 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=174.2
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY--EG 244 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~ 244 (398)
+...+..++|+..+.+++.++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++...|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445578899999999999999999999999999999999 689999999999999999999999999999998874 78
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL 324 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
++.++.++++.+|. +..+|...+.++...|+++++++++.++++. ......+|.
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-------------------------d~~N~sAW~ 180 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-------------------------DVRNNSAWN 180 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------------------------CCCchhHHH
Confidence 89999999999999 9999999999999999999999999998662 233346777
Q ss_pred HHHHHHHhC---CCh----HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 325 LLGKAYSDG---GRV----SDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 325 ~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.++.++... |.+ ++++.+..+++..+|++..+|..++.++.. +++..+|+..+.+++...|+++.++
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 788887665 333 578888999999999999999999999988 4567889999999999888877654
No 46
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.6e-17 Score=138.72 Aligned_cols=271 Identities=16% Similarity=0.164 Sum_probs=210.8
Q ss_pred chhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 015907 109 PIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEET 184 (398)
Q Consensus 109 ~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 184 (398)
+....-|++...... +|-+ .| ...|+..|+++..++ |......-..|..+...|++++-...-...
T Consensus 223 e~~~~lr~NvhLl~~-lak~~~~~Gdn~~a~~~Fe~~~~~d---------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMA-LGKCLYYNGDYFQAEDIFSSTLCAN---------PDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred HhhccCCccHHHHHH-HhhhhhhhcCchHHHHHHHHHhhCC---------hhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 344445555555544 4444 55 666666666666666 666666666666666666666666665666
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+........-|+.-+.+++..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+..+.|- ..+.|
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y 371 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIY 371 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHH
Confidence 66555555667777777888889999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc--------ccc---cccccccccCCCchH--HHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG--------RSG---DKKETEPQKVDPIQV--ELLLGKAYS 331 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~--~~~la~~~~ 331 (398)
.+|..+|...|++.+|...-..+.+.++.+... ....| ... ...+.+++...|... ...++..+.
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~--LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARS--LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh--hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 999999999999999999988888888776441 11111 001 134667788888753 344999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..|.+.+++..+++.+...|+. ..+..||.++...+.+++|.++|..|+.++|++..+.-.
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 9999999999999999987754 678999999999999999999999999999999877654
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=2.1e-16 Score=143.57 Aligned_cols=284 Identities=13% Similarity=0.044 Sum_probs=155.7
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT 176 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 176 (398)
+=|..+|..++..+|.....|.. .... .| .+.-..+|++++... |.....|...+..+...|+...
T Consensus 533 ~carAVya~alqvfp~k~slWlr-a~~~ek~hgt~Esl~Allqkav~~~---------pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLR-AAMFEKSHGTRESLEALLQKAVEQC---------PKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHH-HHHHHHhcCcHHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHhcCCcHH
Confidence 33444444455555544444432 2222 33 444444555555444 4444445555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
|...+.++++.+|++.++|.....+.....+++.|..+|.++....|. ..+|+.-+.+...+++.++|+.+++.+++..
T Consensus 603 ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 603 ARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 555555555555555555444444444444444444444444443332 3344444444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHHHHHH--
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVELLLG-- 327 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la-- 327 (398)
|+ ....|..+|.++.++++.+.|...|....+..+.... ..+....+.... ..+..+.-.+|.+..+|+.
T Consensus 682 p~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 682 PD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred Cc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 44 4444444444444444444444444444333333322 111111111111 1222334567777777744
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCC------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPND------------------------------FRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
.+-.+.|..++|.....++++..|.+ +.++...|..+....++++|.++|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567799999999888888766544 345677888899999999999999
Q ss_pred HHHHhhCCCChHHHHHhhh
Q 015907 378 IQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 378 ~~al~~~p~~~~~~~~l~~ 396 (398)
.+++..+|++.++|...|.
T Consensus 841 ~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred HHHHccCCccchHHHHHHH
Confidence 9999999999999988774
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=5.8e-16 Score=142.84 Aligned_cols=276 Identities=14% Similarity=0.103 Sum_probs=187.4
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH-HHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA-GVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~-~~~~la~~~~~ 170 (398)
.++++.+|++......... +++..+.+..+.. .| ++.|..++.++.... |+... .....+..+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---------~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---------DNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHH
Confidence 4567777776665433322 2344444412222 67 999999999998777 77643 33345889999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHccCH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR--------LLGEVKYELKDY 242 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~g~~ 242 (398)
.|+++.|+..+++..+.+|+++.++..++.+|...|++++|++.+.++.+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999888877665433221 111112222334
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-Cchhhhc--ccccc--ccccccccC
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-DDLSVKD--GRSGD--KKETEPQKV 317 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~ 317 (398)
+...+.++......|+ ++.++..++..+...|+.++|...++++.+. +.++. ..++..+ ++... ..++...+.
T Consensus 246 ~~l~~~w~~lp~~~~~-~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 246 EGLKRWWKNQSRKTRH-QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHHHHhCCHHHhC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 4444555554455566 7888888899999999999999988777652 22211 1111111 11111 223334556
Q ss_pred CCchHH--HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 318 DPIQVE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 318 ~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+|+++. ..+|.++...+++++|..+|+++++..|++. .+..++.++..+|+.++|..+|++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 666544 3488888888888888888888888888754 45678888888888888888888887754
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.7e-17 Score=144.47 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=82.6
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
...++++.|+.+|.+.+..+|.+...+.. ...+ .| +..|..--.+.+.+. |..+..|..+|..+.-
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySn-rsaa~a~~~~~~~al~da~k~~~l~---------p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSN-RSAAYASLGSYEKALKDATKTRRLN---------PDWAKGYSRKGAALFG 82 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcc-hHHHHHHHhhHHHHHHHHHHHHhcC---------CchhhHHHHhHHHHHh
Confidence 35678889999999999999986655554 3333 77 999999999999999 9999999999999999
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTL 202 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 202 (398)
.|+|++|+..|.+.++.+|++...+.+++.++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999998887777776665
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=149.39 Aligned_cols=250 Identities=15% Similarity=0.158 Sum_probs=203.9
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
........+...+|.-.|+..+..+|.+.++|.. ||+. .+ -..|+..+.+++.++ |++..++..||
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~-LG~~qaENE~E~~ai~AL~rcl~Ld---------P~NleaLmaLA 360 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQK-LGITQAENENEQNAISALRRCLELD---------PTNLEALMALA 360 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHH-hhhHhhhccchHHHHHHHHHHHhcC---------CccHHHHHHHH
Confidence 3444556677889999999999999999999999 9999 34 778999999999999 99999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEG-------AAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVK 236 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~ 236 (398)
..|...|.-.+|+.+|.+-+...|........ ..........+..-.++|-.+....| .+++++..||.+|
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 99999999999999999999877654221110 00001111223445566667777777 6899999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
...|+|++|+++|+.||...|+ +...|..||..+....+..+|+..|++|++ +.
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq-------------------------Lq 494 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ-------------------------LQ 494 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh-------------------------cC
Confidence 9999999999999999999999 999999999999999999999999999966 33
Q ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND----------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 317 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+.-..+++++|..+..+|.|.+|..+|-.+|.+.+.. ..+|..|-.++..+++.+-+..
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 3334678889999999999999999999999876651 2477777777777777764443
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=9.9e-17 Score=140.00 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=206.5
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV 173 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 173 (398)
+++.+|-..-...+..+.-++.+... .|.+ .| ++.|..+|..++.-+ ....++++++|..+...|+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~n-kgn~~f~ngd~dka~~~ykeal~nd---------asc~ealfniglt~e~~~~ 539 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTN-KGNIAFANGDLDKAAEFYKEALNND---------ASCTEALFNIGLTAEALGN 539 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhc-CCceeeecCcHHHHHHHHHHHHcCc---------hHHHHHHHHhcccHHHhcC
Confidence 34455555555566666556666655 5555 77 999999999999877 8889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+++|+.+|-+...+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..||.+|-+.|+-.+|..++-...
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYS 331 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~ 331 (398)
...|- +.++.-+||..|....-+++|+.+|+++.- ..|. .....++.|+.
T Consensus 620 ryfp~-nie~iewl~ayyidtqf~ekai~y~ekaal---------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 620 RYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAAL---------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred cccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHh---------------------------cCccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999833 3344 34445999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
+.|+|++|...|+..-...|.+.+.+..|.++.-.+|-
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999998887774
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.78 E-value=2.4e-16 Score=135.47 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=160.4
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-- 227 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 227 (398)
..+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4467788999999999999999999999999999999876 58899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc
Q 015907 228 -VFRLLGEVKYEL--------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 228 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+++.+|.++... |++++|+..|++++..+|+ +..++..+..+.... ..+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~-------~~~-------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLR-------NRL-------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHH-------HHH--------------
Confidence 788999999876 8899999999999999999 765553332221110 000
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 375 (398)
......+|.+|...|++.+|+..|++++...|+. +.+++.+|.++..+|++++|+.
T Consensus 166 ---------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 166 ---------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred ---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223458899999999999999999999997764 5899999999999999999999
Q ss_pred HHHHHHhhCCC
Q 015907 376 MFIQARFFAPE 386 (398)
Q Consensus 376 ~~~~al~~~p~ 386 (398)
+++......|+
T Consensus 225 ~~~~l~~~~~~ 235 (235)
T TIGR03302 225 AAAVLGANYPD 235 (235)
T ss_pred HHHHHHhhCCC
Confidence 99888776663
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=3e-16 Score=142.56 Aligned_cols=285 Identities=11% Similarity=0.022 Sum_probs=232.8
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
++..+|..++.++...+|++.+.|....-+. .. ++.|..+|.++.... .....|+.-+.....+++.
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s----------gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS----------GTERVWMKSANLERYLDNV 667 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC----------CcchhhHHHhHHHHHhhhH
Confidence 5556777788888888888777775422222 22 888888888887644 4556788888888889999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+.+++++++..|+....|..+|.++.++++.+.|.+.|...++..|..+..|..++.+-...|+...|...++++.-
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch--hhhcccccc-ccccccccCC--CchHHHHHHHH
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL--SVKDGRSGD-KKETEPQKVD--PIQVELLLGKA 329 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~--~~~~~~~la~~ 329 (398)
.+|. +...|.....+-.+.|..++|.....++++..+...--.. .....+... .....++..- ..++...+|..
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHH
Confidence 9999 9999999999999999999999999999887776633100 000011111 1111122221 22455568999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 330 YSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+....+++.|..+|.+++..+|++.++|..+-..+...|.-++-.+.+.+.....|.+.+.|..
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988875
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=7.9e-17 Score=135.85 Aligned_cols=257 Identities=13% Similarity=0.160 Sum_probs=208.4
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| +..|+..|..++..+ |++..+++..|.+|...|+-.-|+..+.+++++-|+...+....|.+++.+|+
T Consensus 51 ~~Q~sDALt~yHaAve~d---------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGD---------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred hhhHHHHHHHHHHHHcCC---------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 66 999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HH------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDP---DV------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+++|..-|+++++.+|.+. ++ +......+...|+...|+....+++++.|= +...+...+.+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHH
Confidence 9999999999999999542 22 222334455678999999999999999998 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHH----HH----------HHHHHH
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVE----LL----------LGKAYS 331 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~----------la~~~~ 331 (398)
..|++..|+.-++.+-++...+.+ ..++...+..+. ..+++-+..+|..-. +. -+....
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776655544 333333344433 334555666666311 11 123345
Q ss_pred hCCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFR----GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
..++|.++++..++.++.+|..+. ....+..|+..-|++.+|+..+..++.++|++.++++++.
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 667788888888888887777433 4455778888899999999999999999999999998764
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.1e-17 Score=141.47 Aligned_cols=261 Identities=14% Similarity=0.052 Sum_probs=218.1
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
....+.+.+|++.|..++...|++...|....... .| ++.|....+..+.+. |.........+.++..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k---------d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK---------DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC---------CCccccccchhhhhhh
Confidence 44778899999999999999999977776623333 77 888888888888888 8888888888888888
Q ss_pred hccHHHHHHHHHHHH------------hcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 171 KNVLQTRLKKYEETL------------SIS------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.++..+|...|+..- .+. |.-..+....+.|+...|++++|...--..+++++.+.++++..
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 888888876665221 111 21233556678999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCH------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINF------------EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
|.++...++.+.|+..|++++.++|+ .. ..|..-|.-.+..|++..|.++|..++.+.|.+
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpd-h~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------ 282 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPD-HQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------ 282 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChh-hhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------
Confidence 99999999999999999999999997 43 357778899999999999999999996654433
Q ss_pred hhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 301 VKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
..+. ..+.+++.+...+|+..+|+...+.++.++|....++...|.|+..+++|++|++.|++
T Consensus 283 ----------------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 283 ----------------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred ----------------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 24455999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCC
Q 015907 380 ARFFAPE 386 (398)
Q Consensus 380 al~~~p~ 386 (398)
+++...+
T Consensus 347 a~q~~~s 353 (486)
T KOG0550|consen 347 AMQLEKD 353 (486)
T ss_pred HHhhccc
Confidence 9988665
No 56
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.77 E-value=1.8e-16 Score=145.77 Aligned_cols=234 Identities=16% Similarity=0.137 Sum_probs=187.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAA 199 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la 199 (398)
.| ++.|...+..++.+-.- ..+...|........+|..|...+++.+|+..|++++.+ +|.-..++.+||
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k-~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEK-TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred hccHHHHHHHHHHHHHHHHH-ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67 99999999999977100 111223555566667999999999999999999999975 344466899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCC--CHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKEKP--------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDI--NFEVL 264 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~~ 264 (398)
.+|...|++++|..++++++++.. .-...+..++.++...+++++|+.++++++++. ++. -+..+
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999999999999999998642 234567888999999999999999999998763 220 24578
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
.+||.+|..+|++++|.++|++++.+...... ...+ ..+...+|..|.+.+++.+|...
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~-------------------~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLG-------------------KKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-------------------CcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999887654311 1112 23445599999999999999999
Q ss_pred HHHHHHh-------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 343 YDRLISS-------YPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 343 ~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
|.+++.+ +|+....+.+|+.+|..+|++++|+++.++++.
T Consensus 432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 9988764 355567899999999999999999999999884
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.1e-15 Score=150.26 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=211.4
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+......+++.+|+..|++++..+|.++..... +..+ .| .++|+.++++++.-. |........+|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~d-ll~l~~~~G~~~~A~~~~eka~~p~---------n~~~~~llalA 109 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDD-WLQIAGWAGRDQEVIDVYERYQSSM---------NISSRGLASAA 109 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHH-HHHHHHHcCCcHHHHHHHHHhccCC---------CCCHHHHHHHH
Confidence 3444556788899999999999999998533222 2222 67 999999999998333 45555566668
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 245 (398)
..+...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|..... ..++.++...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHH
Confidence 899999999999999999999999999999999999999999999999999999999986554 5667777667888789
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH-------------------------------------
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR------------------------------------- 288 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~------------------------------------- 288 (398)
+..++++++.+|+ +.+++..+..++...|-...|.+...+--
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 9999999999999 99998888888888777666665544221
Q ss_pred -----------HHhcCCCCCch------------hhhcccccc-----ccccccccCCCchHHHHHHHHHHhCCChHHHH
Q 015907 289 -----------ERLSTGKSDDL------------SVKDGRSGD-----KKETEPQKVDPIQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 289 -----------~~~~~~~~~~~------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 340 (398)
...+..|+... ....++..+ +.+...-..-|..+..++|..|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 11111121000 000011111 11222223446677777999999999999999
Q ss_pred HHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 341 AVYDRLISSYP------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 341 ~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
.+|++++...| .+......|...|...+++++|..++++.....|
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 99999987553 2333356788888999999999999999887655
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=9.4e-16 Score=142.17 Aligned_cols=219 Identities=13% Similarity=0.017 Sum_probs=151.0
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
...++.++|...+.++.+..|++........+.+ .| ++.|...++...... |.++.++..++.++..
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---------P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA---------PRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHH
Confidence 3445555555555555555554431111101111 34 555555555555555 5555555555555555
Q ss_pred hccHHHHHHHHHH--------------------------------------HHhcCC----CCHHHHHHHHHHHHHcCCH
Q 015907 171 KNVLQTRLKKYEE--------------------------------------TLSISP----KDSTALEGAAVTLAELGDY 208 (398)
Q Consensus 171 ~g~~~~A~~~~~~--------------------------------------~l~~~p----~~~~~~~~la~~~~~~g~~ 208 (398)
.|++++|...+.+ +....| +++..+..++..+...|++
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 5555555444444 344445 4677888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHcCCchHHHHHH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVF--RLLGEVKYELKDYEGSAAAYRVSTMVSKDINF--EVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
++|.+.++++++..|++.... ..........++.+.+++.++++++..|+ ++ ..+..+|.++...|++++|.++|
T Consensus 280 ~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 280 DSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999999999999887532 22333344468889999999999999999 89 88889999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhccccccccccccccCCCchH-HHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV-ELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
+++.. ....|... ...+|.++...|+.++|..+|++++.
T Consensus 359 e~a~a-------------------------~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAA-------------------------CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHH-------------------------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 85322 44566543 44699999999999999999999876
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=8.6e-16 Score=128.72 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=82.6
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.+.|+.+|-+++..+|...+.... +|.+ .| .+.|+.+....+...++ .......+.+.+|.-|+..|-+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~lt-LGnLfRsRGEvDRAIRiHQ~L~~spdl-----T~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLT-LGNLFRSRGEVDRAIRIHQTLLESPDL-----TFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHH-HHHHHHhcchHHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555555555444444433 4444 34 44454444443321100 0011123444445555555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.|...|....+...-...++..+..+|....+|++|++..++..++.+.. +..+..++..+....+++.|...+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 555555554444333333444455555555555555555555554444432 223344444444444455555555
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.++++.+|+ ...+-..+|.++...|+|+.|++.++.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 555555554 4555555555555555555555555444
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2e-15 Score=126.55 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=201.2
Q ss_pred hhhhhcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----H
Q 015907 120 KKTIGLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----S 192 (398)
Q Consensus 120 ~~~~~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~ 192 (398)
.+..|+..+ .. .+.|+..|..++..+ |...++.+.+|..+...|+.+.|+..-+..+. .|+. .
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d---------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~ 107 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQED---------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRL 107 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcC---------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHH
Confidence 344445555 44 899999999999988 99999999999999999999999999887766 4554 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC----HHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN----FEVLRGLT 268 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~la 268 (398)
.++..+|.-|+..|-++.|...|..+.+...--..++..|..+|....+|++|++.-++..++.+..+ ...+..++
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 48899999999999999999999999886666678999999999999999999999999999988721 34688999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
..+....+.+.|+.++.++++ .+|. .+...+|.++...|+|+.|++.++.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlq---------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 188 QQALASSDVDRARELLKKALQ---------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHh---------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 999999999999999999955 4454 45556999999999999999999999
Q ss_pred HHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 347 ISSYPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 347 l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
++.+|+. +.+...|..||..+|+.++...++.++.+..+..
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 9999987 6788899999999999999999999999887654
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.74 E-value=1.2e-15 Score=141.22 Aligned_cols=252 Identities=12% Similarity=0.056 Sum_probs=186.7
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT 176 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 176 (398)
.+++..+++.+..+|+++...+. ++.- .+ +..|.....++++++ ...++.+|..++.++...+++.+
T Consensus 461 ~kslqale~av~~d~~dp~~if~-lalq~A~~R~l~sAl~~~~eaL~l~--------~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFY-LALQYAEQRQLTSALDYAREALALN--------RGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHH-HHHHHHHHHhHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhhHH
Confidence 34566666666667776666544 4444 44 677777777777663 04556677777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------------
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--------------------------------- 223 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------------------------------- 223 (398)
|+...+.++...|+|.........+-...++.++|+..+...+.+..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 77777777776666554444444444445555555554444332210
Q ss_pred -----------------------------CC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 224 -----------------------------SD-------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 224 -----------------------------~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.. ...|...+..+...++.++|..++.++-.+.|. .+..|+..
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~ 690 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLR 690 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHh
Confidence 00 124667788888888899999999999999988 88899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHH--HH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVA--VY 343 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~--~~ 343 (398)
|.++...|++.+|.+.|..+ +..+|.++... +|.++.+.|+..-|.. .+
T Consensus 691 G~~~~~~~~~~EA~~af~~A---------------------------l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVA---------------------------LALDPDHVPSMTALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHH---------------------------HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 99999999999999999887 44667665544 9999999998887777 99
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+++++|.+.++|+.+|.++..+|+.++|.+.|..++++.+.+|.
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999999999999999988764
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=4.7e-15 Score=136.79 Aligned_cols=224 Identities=14% Similarity=0.017 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.+..+.-....++.+.|...|.++.+..|++......-.+.+ .| ++.|...++++.... |.++.++.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~---------P~~~~al~ 191 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA---------PRHPEVLR 191 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHH
Confidence 344555556888899999999999998888754432212222 77 999999999999999 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhc------------------------------------------CCCCHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSI------------------------------------------SPKDSTALEGAAV 200 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~------------------------------------------~p~~~~~~~~la~ 200 (398)
.++.+|...|++++|+..+.+..+. .|+++.+...++.
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 9999999999999999666655432 2446667788899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.+...|+.++|...++++++. |.++......+.+ ..++++++++..++.++..|+ ++..+..+|.++...+++++|
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999994 4456555444444 449999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH-HHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE-LLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
..+|+++.. ..|+... ..++.++...|+.++|..+|++++.+.
T Consensus 348 ~~~le~al~---------------------------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 348 SLAFRAALK---------------------------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHh---------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999844 5566554 679999999999999999999998754
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=2.6e-16 Score=123.28 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=117.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 015907 135 VVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 214 (398)
...|++++.++ |.+ ++.+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..
T Consensus 13 ~~~~~~al~~~---------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 13 EDILKQLLSVD---------PET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHcC---------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 35678888777 765 667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 215 LQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 215 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
|++++.++|+++.+++.+|.++...|++++|+..|++++.+.|+ ++..+..++.+...
T Consensus 81 y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~ 138 (144)
T PRK15359 81 YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999888877654
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=3.6e-15 Score=138.24 Aligned_cols=288 Identities=16% Similarity=0.130 Sum_probs=215.6
Q ss_pred HHHHhhcchhhcC--CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-----
Q 015907 102 EEIKEFGPIDYDA--PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----- 170 (398)
Q Consensus 102 eA~~~~~~~~~~~--p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----- 170 (398)
.|+.+.++..... |+++..+.+...+| .| +++++.+..+++... ......-.+..+..+|.+|..
T Consensus 375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~----~~~~~~l~~~~~l~lGi~y~~~A~~a 450 (799)
T KOG4162|consen 375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLL----GGQRSHLKPRGYLFLGIAYGFQARQA 450 (799)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHh----hhhhhhhhhhHHHHHHHHHHhHhhcC
Confidence 3445555554444 65565555434444 55 788888888887633 111112344567777777643
Q ss_pred ------hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHH
Q 015907 171 ------KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 171 ------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.....++++.++++++.+|.|+.+.+.++.-|..+++.+.|....++++++ ..+++.+|..++.++...+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 235678999999999999999999999999999999999999999999999 4567899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC---------------------------
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--------------------------- 296 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------- 296 (398)
+|+.....++.-.|+ |.........+-...++.++|+......+......+.
T Consensus 531 ~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 999999999999988 7776667777777788888888887777666652211
Q ss_pred -----------------Cchhhhcc------------------------------cccc--ccccccccCCCch--HHHH
Q 015907 297 -----------------DDLSVKDG------------------------------RSGD--KKETEPQKVDPIQ--VELL 325 (398)
Q Consensus 297 -----------------~~~~~~~~------------------------------~~~~--~~~~~~~~~~~~~--~~~~ 325 (398)
.+....+. ...+ .++.++...+|.. +++.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 00000000 0000 1223333333432 3344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChHHHHHh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAER--MFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l 394 (398)
.|.++...|++.+|...|..++.++|+++.....+|.++.+.|+..-|.. ++..+++++|.++++|..+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 78899999999999999999999999999999999999999999888888 9999999999999999876
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=7.9e-15 Score=144.18 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=172.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+...+..+.+..+.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+.++++++...|........+|.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ 110 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAAR 110 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 88889999999999999999999999999999999997555589999999999999999999999444444555555688
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++++|++.|+++++.+|+ ++.++..++.++...++.++|+..++++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~-------------------------- 163 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELA-------------------------- 163 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------
Confidence 999999999999999999999999 89999999999999999999999998873
Q ss_pred ccCCCchHHH-HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 315 QKVDPIQVEL-LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 315 ~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
..+|..... .++.++...++..+|+..|+++++.+|++.+++..+..++...|-...|.+..++
T Consensus 164 -~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 164 -ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 455553333 2566666677887799999999999999999999999999999999999877664
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=3.2e-15 Score=137.64 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=178.1
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--- 222 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 222 (398)
.|....+...++..|...|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3666777788999999999999999999999998 55555566779999999999999999999999862
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----C--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 223 -----PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK-----D--INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 223 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|....++.+||.+|...|++++|..++++++++.. . .-...+.+++.++..++++++|+.++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 33456899999999999999999999999988631 1 02346788999999999999999999999987
Q ss_pred hcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCChHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY--------PNDFRGYLAK 360 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 360 (398)
....+. ..++. ..+.++|.+|..+|++++|.++|++++... +.....+..+
T Consensus 355 ~~~~~g-------------------~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 355 YLDAPG-------------------EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhhcc-------------------ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 764322 11212 355569999999999999999999999853 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh----CCCChHH
Q 015907 361 GIILKENGKVGDAERMFIQARFF----APEKVKA 390 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 390 (398)
|..|.+++++.+|...|..+..+ -|+++.+
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 99999999999999999988764 4555443
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-14 Score=126.14 Aligned_cols=233 Identities=13% Similarity=0.071 Sum_probs=154.3
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++..+|+-.|+++.-.+|......-. .|.+ .| ++.-..+....+... ..+..-|+.-+...+..
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~-Ya~LL~~eg~~e~~~~L~~~Lf~~~---------~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDL-YAVLLGQEGGCEQDSALMDYLFAKV---------KYTASHWFVHAQLLYDE 313 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHH-HHHHHHhccCHhhHHHHHHHHHhhh---------hcchhhhhhhhhhhhhh
Confidence 5577888999999998888887776554 4444 22 444444444444444 33334455555555555
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD---------- 241 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---------- 241 (398)
.++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|...+.|..|..+|...|.
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred --------------------------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 242 --------------------------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 242 --------------------------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
-++|..++++++.+.|. +..+...++.++...|.+..++.++++.+.
T Consensus 394 ~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------ 466 (564)
T KOG1174|consen 394 TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI------ 466 (564)
T ss_pred HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh------
Confidence 34566677777777887 777888888888888888888888888744
Q ss_pred CCchhhhccccccccccccccCCCchHH-HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVE-LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE 366 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 366 (398)
..|+... ..+|.++...+.+++|+.+|..++.++|++..+...+-..-..
T Consensus 467 ---------------------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 467 ---------------------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred ---------------------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 4455444 4499999999999999999999999999998877766554443
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.66 E-value=3.1e-13 Score=136.68 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=160.8
Q ss_pred HHHHhHHHHHHhhcchhhcC--CCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDA--PIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~--p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
...++.++|..+|+.+.... |+......+ +..+ .| .+.|..+|..+...+ ...+..+|..+...|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL-I~~y~k~G~vd~A~~vf~eM~~~G--------v~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTL-ISTCAKSGKVDAMFEVFHEMVNAG--------VEANVHTFGALIDGCA 518 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhCcCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHH
Confidence 35566777777777766542 332222222 2222 56 777777777776543 0234566777777777
Q ss_pred HhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHH
Q 015907 170 EKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
+.|++++|+..|..+.... ..+...|..+...|.+.|++++|.+++.++... .| +...|..+...|.+.|++++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 7777777777777775543 123556777777777777777777777777652 33 34566666777777777777
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCC-------chhhhcccccc--cccccc-
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD-------DLSVKDGRSGD--KKETEP- 314 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~- 314 (398)
|.+.|+.+.+.+...+...|..+...|.+.|++++|+.+|.++.+. ...|+. ......++.+. ..+...
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777776653335667777777777777777777777665442 112220 00111111111 001111
Q ss_pred -ccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 315 -QKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 315 -~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
....|.. .+..+...|.+.|++++|+.+|+++.+. .| +...|..+...|.+.|++++|.++|++...
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1222332 3333666667777777777777666542 23 345566666666667777777766666554
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=3e-14 Score=130.48 Aligned_cols=203 Identities=16% Similarity=0.124 Sum_probs=166.3
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
+|+++.++..+|..+...|+.+.+...+.++....|.+ .+.....+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 38999999999999999999999999999988877755 456778899999999999999999999999999987776
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH----hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 231 LLGEVKYELKDYEGSAAAYRVST----MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
. +..+...|++..+.....+++ ...|. ...++..+|.++...|++++|+..++++++
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~----------------- 142 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPD-YWYLLGMLAFGLEEAGQYDRAEEAARRALE----------------- 142 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------
Confidence 5 555555555444444444443 45566 677888899999999999999999999866
Q ss_pred ccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF----RGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
..|. ..+..+|.++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|+++
T Consensus 143 ----------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 ----------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred ----------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344 3455599999999999999999999999877443 35678999999999999999999999
Q ss_pred HhhCC
Q 015907 381 RFFAP 385 (398)
Q Consensus 381 l~~~p 385 (398)
+...|
T Consensus 213 ~~~~~ 217 (355)
T cd05804 213 IAPSA 217 (355)
T ss_pred hcccc
Confidence 87766
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=8.9e-14 Score=126.77 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=212.3
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+.+....+++...++..++++...|.+.+...+ .|+. +| .++|....+.++..+ +.....|..+|
T Consensus 13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm-kGL~L~~lg~~~ea~~~vr~glr~d---------~~S~vCwHv~g 82 (700)
T KOG1156|consen 13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLAM-KGLTLNCLGKKEEAYELVRLGLRND---------LKSHVCWHVLG 82 (700)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh-ccchhhcccchHHHHHHHHHHhccC---------cccchhHHHHH
Confidence 3444557788888999999999999999999888 8877 78 999999999999877 88899999999
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 245 (398)
.++....+|++|+.+|..++.+.|++...|..++.+..++++++-....-.+.+++.|..-..|..++..+...|++..|
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC---CCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 246 AAAYRVSTMVS---KDI----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 246 ~~~~~~al~~~---p~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
....+...... |+. ..+.......++...|.+++|++.+..-.... .+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-------------------------~D 217 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-------------------------VD 217 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-------------------------HH
Confidence 99888777654 330 12244555666778888888888875532210 01
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAE-RMFIQARFFAPE 386 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 386 (398)
.-......|.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|...-+..|.
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 11122238999999999999999999999999999998888888875333333444 555554444443
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.66 E-value=5e-13 Score=135.16 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=169.5
Q ss_pred HHHhHHHHHHhhcchhhc--CCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYD--APIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~--~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
..++.++|.++|+++... .|+......+ +..+ .| ++.|..+|..+.... . ..+..+|..+...+.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL-I~gy~k~G~~eeAl~lf~~M~~~G-------v-~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGAL-IDGCARAGQVAKAFGAYGIMRSKN-------V-KPDRVVFNALISACGQ 554 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHCcCHHHHHHHHHHHHHcC-------C-CCCHHHHHHHHHHHHH
Confidence 556677777777777653 3433322222 2222 56 777777777775443 1 2234556666677777
Q ss_pred hccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHH
Q 015907 171 KNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 245 (398)
.|++++|...|+++... .| +...|..+...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 77777777777766542 23 34566666666777777777777777666654 33455666666666666666666
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------Cchhhhcccccc--cccccc--
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-------DDLSVKDGRSGD--KKETEP-- 314 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~-- 314 (398)
+..|+++....-..+...|..+...+...|++++|..++..+.+. ...++ ...+...++.+. ..+...
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666666665532223556666666666666666666666655432 11111 111111122221 011111
Q ss_pred ccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 315 QKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISSY-PNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 315 ~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
....|+. .|..+...|.+.|++++|+.+|+++.... ..+...|..+...+.+.|++++|..++.++++.
T Consensus 713 ~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2344553 34449999999999999999999987642 234567778889999999999999999999875
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=5.2e-14 Score=132.74 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=190.9
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
+++.+.+....-.+-..+|.+.+.|.. ++.. +| +..|.-+|.+|+... |.+....+..+..|.+.|
T Consensus 186 rGd~eK~l~~~llAAHL~p~d~e~W~~-ladls~~~~~i~qA~~cy~rAI~~~---------p~n~~~~~ers~L~~~~G 255 (895)
T KOG2076|consen 186 RGDIEKALNFWLLAAHLNPKDYELWKR-LADLSEQLGNINQARYCYSRAIQAN---------PSNWELIYERSSLYQKTG 255 (895)
T ss_pred cccHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHhcccHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHhC
Confidence 345555555555556678988888887 7766 78 999999999999999 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A 245 (398)
++..|...|.+++...|... ..-...+..+...++-+.|++.++.++.... ...+.+..++.++....+++.|
T Consensus 256 ~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~ 335 (895)
T KOG2076|consen 256 DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKA 335 (895)
T ss_pred hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHh
Confidence 99999999999999998331 2334456677777777888888888777321 1122334444555555555544
Q ss_pred HHHHHHHH---------------------------------------------------------------hhCCCCCHH
Q 015907 246 AAAYRVST---------------------------------------------------------------MVSKDINFE 262 (398)
Q Consensus 246 ~~~~~~al---------------------------------------------------------------~~~p~~~~~ 262 (398)
........ ...|...++
T Consensus 336 ~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~d 415 (895)
T KOG2076|consen 336 LMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVD 415 (895)
T ss_pred hHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHH
Confidence 44333222 212333566
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
.+..++.+|...|++.+|+.+|..+....+ .....+|+.+|.||..+|.+++|+.+
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~~------------------------~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNREG------------------------YQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCcc------------------------ccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 788899999999999999999966533111 11235777899999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 343 YDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 343 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
|.+++...|++.++...|+.++.++|+.++|.+.+++..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999998876
No 73
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=4.4e-14 Score=140.29 Aligned_cols=274 Identities=10% Similarity=0.014 Sum_probs=193.7
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhh-hcchh-hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTI-GLGTK-IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~-~lg~~-~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
..++.++|.++|+.+... +...|.. ..|.+ .| .++|..+|..+...+ . ..+..++..+...+...|
T Consensus 271 k~g~~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-------~-~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-------V-SIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------C-CCCHHHHHHHHHHHHhcc
Confidence 446677888888776432 2333332 12222 66 888888888876543 1 234456777888888888
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|+.++|++.|++
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888888765 45667788888888888888888888887754 3456788888889999999999999998
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-------Cchhhhcccccc-ccccccccCCCc-hH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-------DDLSVKDGRSGD-KKETEPQKVDPI-QV 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~-~~ 322 (398)
+.......+..++..+..++...|..++|..+|+.+.+..+..|+ .+++...|++++ ..+.+.....|. ..
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 887654435778888888888899999999998887665444444 122222333333 111112233343 23
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|..+...+...|+++.|...+++++++.|++...|..++.+|...|++++|.+.++...+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4447777888888888888888888888888888888888888888888888888877654
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=3.4e-14 Score=129.45 Aligned_cols=237 Identities=12% Similarity=0.086 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
+.........++.-. |.+++++-..|..+...|+-++|..+...++..++....+|..+|.++....+|++
T Consensus 23 YkkgLK~~~~iL~k~---------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKF---------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHhHHHHHHHHHHhC---------CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 666677777777766 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
|+.+|+.|+.+.|++..+|..++.+..++++++.....-.+.+++.|. .-..|..++..+...|++..|...++...+.
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 8899999999999999999999999887664
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV 370 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 370 (398)
....+.. ..............+..+.|.+++|++.+..--..--+........+.++.+++++
T Consensus 173 ~~~~~s~-----------------~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 173 QNTSPSK-----------------EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred hccCCCH-----------------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 3211110 00001123333677778889988888877654333333455667789999999999
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHh
Q 015907 371 GDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 371 ~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++|...|...+..+|++.+-+..+
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHH
Confidence 999999999999999987765543
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=8.6e-15 Score=114.68 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 257 (398)
..+|+++++++|++ ++.+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34556666655543 344566666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 258 DINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+ ++.+++.+|.++...|++++|+..|+++
T Consensus 90 ~-~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 90 S-HPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 5555555555555555555555555544
No 76
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.64 E-value=2.3e-13 Score=135.20 Aligned_cols=275 Identities=14% Similarity=0.142 Sum_probs=185.2
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchh--hhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETE--KKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~--~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
....++..+|+.+|+.+....|..++ .+..-+..+ .+ .+.+..++..+.... ..| +..++..+...|
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-------~~~-~~~~~n~Li~~y 168 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-------FEP-DQYMMNRVLLMH 168 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CCc-chHHHHHHHHHH
Confidence 34567788999999887754433222 222212222 45 777888888776544 113 456777788888
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----------------------
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--S---------------------- 224 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~---------------------- 224 (398)
.+.|++++|...|++..+ .+...|..+...|.+.|++++|+.+|+++++..+ +
T Consensus 169 ~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred hcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 888888888888887754 2556788888888888888888888888866432 1
Q ss_pred ------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 225 ------------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 225 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+..++..+...|.+.|++++|.+.|+... +. +..+|..+...|...|++++|+.+|+++... .
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~-~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g 320 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G 320 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CC-ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 12234566778888888888888887653 23 6778888888888888888888888776542 2
Q ss_pred CCCCC-------chhhhcccccc--cccccc--ccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 293 TGKSD-------DLSVKDGRSGD--KKETEP--QKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 293 ~~~~~-------~~~~~~~~~~~--~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
..|+. ......+.++. ..+... ....|+ .++..+...|.+.|++++|..+|++..+ .+...|..+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l 397 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL 397 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 22221 11111122221 001111 122333 3444589999999999999999988753 356789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 015907 361 GIILKENGKVGDAERMFIQARFF--APEK 387 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~--~p~~ 387 (398)
...|.+.|+.++|++.|++.... .|+.
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999998764 4553
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=1.8e-14 Score=118.95 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=114.2
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK-YELKD--YEGSAA 247 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 247 (398)
.++.++++..++++++.+|++++.|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.++++++.+|+ ++.++..+|..+...|++++|+.+|+++++..+
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999 999999999999999999999999999977554
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.63 E-value=9.2e-13 Score=120.62 Aligned_cols=262 Identities=15% Similarity=0.077 Sum_probs=170.7
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhh-----cchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIG-----LGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~-----lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
....++.++|.+.+++++...|++...+..+ +|...| ...+...+... ....|.....+..+|.+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---------APENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---------CcCCCCcHHHHHHHHHH
Confidence 3456677888888888888888877654321 111123 33333333321 12236666777778888
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP----DVFRLLGEVKYELKDYE 243 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~ 243 (398)
+...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|..+ ..+..++.++...|+++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 88888888888888888888888888888888888888888888888888888766432 34567888888888888
Q ss_pred HHHHHHHHHHhhCCCC-CHHHHH---HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 244 GSAAAYRVSTMVSKDI-NFEVLR---GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~-~~~~~~---~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
+|+..|++++...|.. ...... .+...+...|....+..+ +.+......... ....
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~-------------------~~~~ 263 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP-------------------DHGL 263 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC-------------------cccc
Confidence 8888888887665521 111111 222223334443333333 111111000000 0001
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN---------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.......+.++...|+.++|...+..+...... ........+.++...|++++|+..+..++.+.
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 122234888889999999999999887653322 25567788999999999999999999998764
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=2.3e-13 Score=111.70 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=156.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|.+...+..+|...+..|++.+|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444677777778888999888 88999999999999999999998888898888888899999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
+..+.|+ +.++|..+|.+|.+.|++++|...|.+++++. .....+..++|..|.
T Consensus 126 A~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-------------------------~~~p~~~nNlgms~~ 179 (257)
T COG5010 126 AARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELA-------------------------PNEPSIANNLGMSLL 179 (257)
T ss_pred HhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-------------------------cCCchhhhhHHHHHH
Confidence 9999999 99999999999999999999999999987743 333467777999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
-.|+++.|..++..+...-+.+..+..+++.+...+|++++|.....+-
T Consensus 180 L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999999998878888999999999999999999988776543
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.62 E-value=5.8e-14 Score=120.62 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=128.2
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH---HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE---AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~ 201 (398)
.| ++.|+..|..++... |.++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+|.+
T Consensus 46 ~~~~~~A~~~~~~~~~~~---------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~ 116 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY---------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS 116 (235)
T ss_pred cCCHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence 45 777777777777666 5443 57889999999999999999999999999998765 68889999
Q ss_pred HHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 202 LAEL--------GDYTRAVSLLQDLAKEKPSDPDVF-----------------RLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 202 ~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+... |++++|+..+++++..+|++..++ ..+|.++...|++.+|+..|++++...
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 9876 789999999999999999875432 357888999999999999999999997
Q ss_pred CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 257 KDI--NFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 257 p~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
|+. .+.++..+|.++...|++++|..+++....
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 761 457999999999999999999999877644
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-14 Score=124.96 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
+..|+..+..++.+. |++...|.+.+.+++..|++++|....++.+++.|..+......+.++...++..+
T Consensus 65 Y~nal~~yt~Ai~~~---------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMC---------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHHHHHHHHHHhC---------ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHH
Confidence 788999999999999 99999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 211 AVSLLQDLA------------KEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 211 A~~~~~~al------------~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
|...++..- .+. |....+-..-+.|+...|++++|...--..+++++. +.++++..|.++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccc
Confidence 886665221 111 222334556679999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
...+.+.|+..|++++.+.+....... ....|. ..+-.-|.-..+.|++..|.++|..+|.++
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~---------------~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKS---------------ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHh---------------HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 999999999999999775544321000 011111 233347888999999999999999999999
Q ss_pred CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 351 PND----FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 351 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|++ ...|.+++.+...+|+.++|+.....++.++|....++..+
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 986 45789999999999999999999999999999998887754
No 82
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.4e-13 Score=109.01 Aligned_cols=183 Identities=13% Similarity=0.075 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++....+-....+....|+.+-|..++++.....|....+....|..+...|++++|+++|+..++.+|.+..++...-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 55555566667788889999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+...+|+.-+|++.+...++..+. +.++|..++.+|...|+|++|.-++++++
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l-------------------------- 181 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL-------------------------- 181 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH--------------------------
Confidence 888999999999999999999999 99999999999999999999999999884
Q ss_pred ccCCCchHHHH--HHHHHHhCC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 315 QKVDPIQVELL--LGKAYSDGG---RVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 315 ~~~~~~~~~~~--la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
-..|....+. +|.++.-+| ++.-|..+|.++++++|.+..+++.+-.+..
T Consensus 182 -l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 182 -LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred -HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 3556654444 888887776 5678999999999999988888776655544
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9e-14 Score=124.34 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PDVFRLL 232 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 232 (398)
....+|...+...++..|+++|..++.++ .+...+.+.+.+|...|.+.+.+....++++..... ..+...+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999 888899999999999999999999999988765432 2234456
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-------------------------CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-------------------------NFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|..|...++++.++.+|++++...... -..--..-|..++..|+|..|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 778888899999999999987643210 1222345688999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++ .+|.+ .+.+.|.||..+|.+..|+...+.+++++|++..+|...|.++.
T Consensus 385 Ik---------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 385 IK---------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred Hh---------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 55 55665 45569999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+.+|++|.+.|+.+++.+|++.++.-.
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 9999999999999999999998776543
No 84
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=6.7e-13 Score=107.96 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=163.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
..|+...++.....+....|+.+.|..+++++-...|+...+...-|..+...|++++|+++|+..++-+|. +...+..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHH
Confidence 344445567777788889999999999999999989999999999999999999999999999999999999 8888888
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
...+...+|+.-+|++.+...++.+.. ..++|..++.+|...|++++|.-+|+++
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~-------------------------D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMN-------------------------DQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcC-------------------------cHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888889999999999999888774432 2467777999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 347 ISSYPNDFRGYLAKGIILKENG---KVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+-+.|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+|+.+|-
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 9999999999999999998877 4677999999999999999999988764
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.60 E-value=2.1e-13 Score=111.87 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=148.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+..+ ..++..+...|+-+.+..+..+....+|.+...+..+|......|++.+|+..++++..+.|++.++|..+|.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 888888 8889999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+|.+.|++++|...|.+++++.|. .+.+..++|..+.-.|+++.|..++..+..
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l------------------------- 196 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL------------------------- 196 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh-------------------------
Confidence 999999999999999999999999 999999999999999999999999988744
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
.......+..+++.+...+|++++|.....+-+
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 222234566679999999999999988765533
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=7.5e-14 Score=115.30 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL-AELGD-- 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~-- 207 (398)
.+.++..+..++..+ |++...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~---------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 55 PEAQLQALQDKIRAN---------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM 125 (198)
T ss_pred HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence 577888899999999 999999999999999999999999999999999999999999999975 67787
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+++|...++++++.+|+++.++..+|.++...|++++|+.+|+++++..|.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 599999999999999999999999999999999999999999999999987
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.60 E-value=2e-13 Score=131.96 Aligned_cols=148 Identities=9% Similarity=0.011 Sum_probs=101.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 183 ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 183 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
......|++++++..||.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|+ +..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 3334466667777777777777777777777777777777777777777777777777777777777777777777 777
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 342 (398)
+++.+|.++...|++++|+.+|++++. ...++.+++..+|.++...|+.++|...
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~-------------------------~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR-------------------------QHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh-------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777777777766643 1222335556677777777777777777
Q ss_pred HHHHHHhCCCChHH
Q 015907 343 YDRLISSYPNDFRG 356 (398)
Q Consensus 343 ~~~al~~~p~~~~~ 356 (398)
|+++++...+-...
T Consensus 211 ~~~a~~~~~~~~~~ 224 (694)
T PRK15179 211 LQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhhCcchHH
Confidence 77777655444433
No 88
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.59 E-value=2.1e-13 Score=132.77 Aligned_cols=215 Identities=12% Similarity=0.077 Sum_probs=170.5
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------ 226 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 226 (398)
..|.+..+|..+...+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34889999999999999999999999999999999999999999999999999998888777 6666655554
Q ss_pred -------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 227 -------------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 227 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
.+++.+|.||-.+|++++|...|+++++.+|+ ++.++.++|..|... +.++|+.++.+++...-.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999 999999999999999 999999999999775332
Q ss_pred CCCCchhhhcccccc--ccccccccCCCchHHH----------HHH------------HHHHhCCChHHHHHHHHHHHHh
Q 015907 294 GKSDDLSVKDGRSGD--KKETEPQKVDPIQVEL----------LLG------------KAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 294 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~la------------~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..+ ... +.+.+.+..+|.+... .++ .+|...++|++++.+++.+++.
T Consensus 182 ~kq---------~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 182 KKQ---------YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hhc---------chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 211 110 1122333444443222 023 5667777888888888888888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
+|.+..+...++.+|. +.|.. ...|+..+++
T Consensus 253 ~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~ 283 (906)
T PRK14720 253 DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM 283 (906)
T ss_pred CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence 8888888888888887 44443 5555555543
No 89
>PLN03077 Protein ECB2; Provisional
Probab=99.56 E-value=2.8e-12 Score=130.50 Aligned_cols=189 Identities=15% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 239 (398)
..+...|.+.|++++|...|+.. +.+..+|..+...|...|+.++|+.+|+++.+. .|+ ..++..+-..+...
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc
Confidence 34456777788888888888775 456778888888888888888888888887764 344 34455556677788
Q ss_pred cCHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 240 KDYEGSAAAYRVSTMVSK-DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
|.+++|..+|+.+.+..+ ..+...|..+..++.+.|++++|.++++++ ...
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----------------------------~~~ 654 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----------------------------PIT 654 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----------------------------CCC
Confidence 888888888888774321 114677888888888888888888887654 233
Q ss_pred Cc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 319 PI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 319 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|+ .+|..+-..+...|+.+.+....++++++.|++...+..++.+|...|++++|.+..+...+.
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 43 334445567778899999999999999999999999999999999999999999998877653
No 90
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=2e-13 Score=106.44 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=103.1
Q ss_pred HHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 137 IFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
.|..++... |.+....+.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++
T Consensus 5 ~~~~~l~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGLD---------SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcCC---------hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777 88888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 217 DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 217 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
++++.+|+++..++.+|.++...|++++|+..|+++++.+|+ +..
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 120 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGE-NPE 120 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch
Confidence 999999999999999999999999999999999999999987 544
No 91
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.56 E-value=2e-13 Score=129.84 Aligned_cols=182 Identities=14% Similarity=0.029 Sum_probs=118.5
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
++....|...|-+.++.+|....++.. +|.. .- ...|...|.+++.++ +.+..++-..+..|.+..
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~-LG~iYrd~~Dm~RA~kCf~KAFeLD---------atdaeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAF-LGQIYRDSDDMKRAKKCFDKAFELD---------ATDAEAAAASADTYAEES 540 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC---------chhhhhHHHHHHHhhccc
Confidence 344567788888888899988888888 8888 23 678889999999888 666666666666666666
Q ss_pred cHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
+++.|....-.+-+..|-. ...|..+|..|...++...|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 6666655544444433332 23445566666666666666666666666666666666666666666666666666666
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
++..++|. +..+.+..+.+....|+|.+|+..+...+.
T Consensus 621 kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 621 KASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666666 555555566666666666666655554443
No 92
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1e-13 Score=115.90 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+..+-.-|.-++..++|++|+..|.++|+++|.++..|.+.|.+|.++|+++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
.+|++.+|++.|+++++++|+ +...+.+|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999 8988888888877776665
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.55 E-value=4.3e-13 Score=129.76 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=135.5
Q ss_pred HHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 94 SALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 94 ~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
...-++..+++.........+|.+++.+.+ ++.+ .| +++|..+++.++.+. |++..++..++.++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-La~i~~~~g~~~ea~~~l~~~~~~~---------Pd~~~a~~~~a~~L~ 131 (694)
T PRK15179 62 HAAVHKPAAALPELLDYVRRYPHTELFQVL-VARALEAAHRSDEGLAVWRGIHQRF---------PDSSEAFILMLRGVK 131 (694)
T ss_pred hhhhcchHhhHHHHHHHHHhccccHHHHHH-HHHHHHHcCCcHHHHHHHHHHHhhC---------CCcHHHHHHHHHHHH
Confidence 334455666777777778888888888887 8777 77 999999999999998 999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHhhCCC
Q 015907 250 RVSTMVSKD 258 (398)
Q Consensus 250 ~~al~~~p~ 258 (398)
+++++...+
T Consensus 212 ~~a~~~~~~ 220 (694)
T PRK15179 212 QAGLDAIGD 220 (694)
T ss_pred HHHHHhhCc
Confidence 999888655
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.54 E-value=2.7e-13 Score=105.70 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
++..++.+|.++...|++++|+..|+++++..+
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999977443
No 95
>PLN03077 Protein ECB2; Provisional
Probab=99.53 E-value=4.9e-12 Score=128.77 Aligned_cols=278 Identities=12% Similarity=0.071 Sum_probs=186.1
Q ss_pred HHHhHHHHHHhhcchhh--cCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDY--DAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~--~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
..++.++|+++|+++.. ..|+......+ +..+ .| ++.|..++..+...+ ...+..++..+...|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l-l~a~~~~g~~~~a~~l~~~~~~~g--------~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKG--------LISYVVVANALIEMYSK 436 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHH-HHHHhccchHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHH
Confidence 56778999999998754 45766555444 4444 67 889999998887665 12345567777888888
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHH----------------------
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPD---------------------- 227 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---------------------- 227 (398)
.|++++|...|++..+ .+...|..+...|...|++++|+.+|++++.. .|+...
T Consensus 437 ~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 437 CKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred cCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 8888888888887643 34567777888888888888888888877643 232211
Q ss_pred ------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 228 ------------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 228 ------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
....+...|.+.|+.++|...|+.. +. +..+|..+...|...|+.++|+.+|+++.+. ...|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Confidence 1123346677777777777777765 23 5677777777777777777777777776542 2223
Q ss_pred CCchh-------hhcccccc-----ccccccccCCCch-HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 296 SDDLS-------VKDGRSGD-----KKETEPQKVDPIQ-VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 296 ~~~~~-------~~~~~~~~-----~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+...+ ...|..++ ..........|.. .+..+..++.+.|++++|..++++. ...|+ ...|..+-.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLN 665 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHH
Confidence 31111 01122221 1111122345553 4445999999999999999998875 34554 667888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+...|+.+.+....+++++++|++...++.
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 8888899999999999999999998766553
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=9.3e-12 Score=116.33 Aligned_cols=227 Identities=19% Similarity=0.155 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
.+.......++.+.|++++|+.++++....-++...++...|.++..+|++++|...|..+++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 45667788889999999999999999988888999999999999999999999999999999999999999999888874
Q ss_pred Hcc-----CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH-HHHHHHhcCCCC--Cchhhhccc----
Q 015907 238 ELK-----DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL-LASRERLSTGKS--DDLSVKDGR---- 305 (398)
Q Consensus 238 ~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~-~~a~~~~~~~~~--~~~~~~~~~---- 305 (398)
... +.+.-...|+......|. .... ..+...+..-..+......| ...+. ...|. .++.....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~-s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPR-SDAP-RRLPLDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCcc-ccch-hHhhcccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHcChhHH
Confidence 333 567778888888777765 1111 11111111101111111111 11100 00000 000000000
Q ss_pred -------------ccc-ccccc--cccCCCch--HH--HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 306 -------------SGD-KKETE--PQKVDPIQ--VE--LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 306 -------------~~~-~~~~~--~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
... ..+.. .....|.. +| +.++..|...|++++|+.+++++|+..|..++.+...|.++.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK 239 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 000 00000 01122222 33 348999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCh
Q 015907 366 ENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
..|++.+|.+.++.|..+|+.|-
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChhhH
Confidence 99999999999999999998763
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=6.7e-13 Score=126.28 Aligned_cols=215 Identities=13% Similarity=0.160 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
...|...|-+++.++ +..+.+|..+|..|+...+...|..+|+++.+++|.+.+++...+..|....+++.
T Consensus 474 ~~~al~ali~alrld---------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 474 SALALHALIRALRLD---------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred HHHHHHHHHHHHhcc---------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 566777778888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSD--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 211 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
|....-.+-+..|.. ...|..+|..|.+.+++.+|+..|+.+++.+|. +...|..+|.+|...|++..|++.|.++.
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 999976666666533 356777999999999999999999999999999 99999999999999999999999998884
Q ss_pred HHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-------HHHHH
Q 015907 289 ERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-------RGYLA 359 (398)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~ 359 (398)
. .+|.+ ..+..+.+....|+|.+|+..+...+....... +.+..
T Consensus 624 ~---------------------------LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 624 L---------------------------LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred h---------------------------cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4 55554 444588899999999999999998887554443 44444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 015907 360 KGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~ 382 (398)
++..+...|=...|..++++.++
T Consensus 677 ~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 677 DAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Confidence 44445555656666666666554
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.51 E-value=1.6e-12 Score=126.85 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-------------------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------------------- 191 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------- 191 (398)
++.|+......+... |+....++.+|..+.+.+++.++... .++...+.+
T Consensus 47 ~deai~i~~~~l~~~---------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~ 115 (906)
T PRK14720 47 TDEAKDICEEHLKEH---------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGEN 115 (906)
T ss_pred HHHHHHHHHHHHHhC---------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhh
Confidence 555666655555555 55555666666655555555554433 333333333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
..+++.+|.||-.+|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777777777777777777777 777777777777654
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=7.4e-12 Score=111.35 Aligned_cols=151 Identities=24% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|....+++..+..++..|++++|...++.++...|+++..+...+.++...++..+|.+.+++++.++|. .+..+.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 5556666666666666666666666666666666666666666666666666666666666666666666 566666666
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
.+|...|++.+|+..++.... .+|. +.|..++..|..+|+..+|..
T Consensus 382 ~all~~g~~~eai~~L~~~~~---------------------------~~p~dp~~w~~LAqay~~~g~~~~a~~----- 429 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLF---------------------------NDPEDPNGWDLLAQAYAELGNRAEALL----- 429 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhh---------------------------cCCCCchHHHHHHHHHHHhCchHHHHH-----
Confidence 666666666666666665533 2222 344446666666665554433
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 347 ISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
..+..|...|++++|+..+..+.+..
T Consensus 430 ------------A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 430 ------------ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 33444555566666666666555543
No 100
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.50 E-value=9.1e-13 Score=101.22 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=71.6
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 186 SIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 186 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
.+. ++..+..+.+|..++..|++++|...|+-+..++|.+...|++||.++..+|++.+|+..|.+++.++|+ ++..+
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 344 5555666666766777777777777777777777777777777777777777777777777777777766 67777
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.++|.+++..|+.+.|...|+.++...
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777776666544
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=1.4e-12 Score=100.20 Aligned_cols=103 Identities=7% Similarity=-0.070 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++.....+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+..|.+++.++|+++..+.++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p 257 (398)
|++..|+.+.|.+.|+.++....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999863
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=3e-12 Score=118.55 Aligned_cols=206 Identities=16% Similarity=0.060 Sum_probs=175.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ...|+.+|++.- .|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-
T Consensus 411 lGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 411 LGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred cchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 67 788888887753 577788999999999999999999888 66778888888877776666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|++|.++.+.. +..+...+|......++|.++.++++..++++|- ....|+.+|.+..+.++++.|...|..+
T Consensus 473 yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66666665543 3446677777777889999999999999999999 9999999999999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
.. +.++....|.+++..|...++-.+|...+.++++.+-++...|.|.-.+..+.
T Consensus 546 vt-------------------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 546 VT-------------------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hh-------------------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 55 33333467778999999999999999999999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q 015907 368 GKVGDAERMFIQARFFA 384 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~ 384 (398)
|.+++|+..+.+.+.+.
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999999999988763
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=2.7e-10 Score=98.93 Aligned_cols=273 Identities=15% Similarity=0.116 Sum_probs=173.8
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh----hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK----IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~----~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
.++++.+|+++....-+..+.....+ + +|.. .| .+.+-.++.++-+.. ..+.......++.....
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~-l-~aA~AA~qrgd~~~an~yL~eaae~~--------~~~~l~v~ltrarlll~ 165 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAY-L-LAAEAAQQRGDEDRANRYLAEAAELA--------GDDTLAVELTRARLLLN 165 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHH-H-HHHHHHHhcccHHHHHHHHHHHhccC--------CCchHHHHHHHHHHHHh
Confidence 55677777777766443333322232 2 2222 56 777777887777663 02333456667777788
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH--HHHHHH--HHHHccCHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDV--FRLLGE--VKYELKDYEGS 245 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~--~~~la~--~~~~~g~~~~A 245 (398)
.|++..|.....++++..|.++.++.....+|...|+|.+...++.++-+..--+ .+. +-..+. ++.+.++-..+
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888888888888888888888888888888888888877776643211 111 111111 11122222222
Q ss_pred H---HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc-------ccccccc
Q 015907 246 A---AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD-------KKETEPQ 315 (398)
Q Consensus 246 ~---~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 315 (398)
. .+++..-..-.. ++.....++.-+...|++++|.+...++++.. .+..+....++... ...++.+
T Consensus 246 ~gL~~~W~~~pr~lr~-~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~~L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRN-DPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDPRLCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhc-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cChhHHHHHhhcCCCCchHHHHHHHHHH
Confidence 2 233322222223 56677777888888888888888886665533 22223333333322 2233344
Q ss_pred cCCCchHHH--HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 316 KVDPIQVEL--LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 316 ~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
...|.++.. .+|..+.+.+.|.+|..+|+.+++..|. ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555444 4999999999999999999999997774 567888999999999999999999998854
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.43 E-value=5.1e-12 Score=114.39 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+...|..++..|++++|+.+|.++++.+|+++.++..+|.+|..+|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
++++|+..|++++.++|+ +..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG-DSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999 999988888886554
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.1e-10 Score=109.25 Aligned_cols=130 Identities=17% Similarity=0.056 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.+++.++..|...|++++|+++.+++|...|. .++.+...|.++-..|++.+|..+++.+..
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~----------------- 256 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARE----------------- 256 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------------
Confidence 35678899999999999999999999999999 999999999999999999999999999855
Q ss_pred ccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhC--CCC-------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSY--PND-------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
.++.|-+.+ .+..+.+.|+.++|...+..-...+ |.. .......|.+|.+.|++..|+.
T Consensus 257 ----------LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 257 ----------LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred ----------CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556666655 8888999999999999887765533 111 2334567999999999999999
Q ss_pred HHHHHHhhC
Q 015907 376 MFIQARFFA 384 (398)
Q Consensus 376 ~~~~al~~~ 384 (398)
.|..+.+..
T Consensus 327 ~~~~v~k~f 335 (517)
T PF12569_consen 327 RFHAVLKHF 335 (517)
T ss_pred HHHHHHHHH
Confidence 998887653
No 106
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.41 E-value=2.9e-10 Score=96.98 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=143.7
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 229 (398)
..+..++..|..+...|++++|+..|++++...|..+.+ .+.+|.+|...+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456778899999999999999999999999999988654 4899999999999999999999999998876 4678
Q ss_pred HHHHHHHHHcc---------------C---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 230 RLLGEVKYELK---------------D---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 230 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
+.+|.++...+ + ..+|+..|++.++..|+ ..-+ .+|...+..+...+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~ya--------------~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQYT--------------TDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-ChhH--------------HHHHHHHHHHHHHH
Confidence 88888765443 1 35688899999999998 4321 22222222221111
Q ss_pred cCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcC
Q 015907 292 STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENG 368 (398)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g 368 (398)
..-.+.+|..|.+.|.|..|+.-++.+++..|+. .+++..++..|..+|
T Consensus 175 ----------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 175 ----------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred ----------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 1233458999999999999999999999998876 578999999999999
Q ss_pred CHHHHHHHHHHH
Q 015907 369 KVGDAERMFIQA 380 (398)
Q Consensus 369 ~~~~A~~~~~~a 380 (398)
..++|.......
T Consensus 227 ~~~~a~~~~~~l 238 (243)
T PRK10866 227 LNAQADKVAKII 238 (243)
T ss_pred ChHHHHHHHHHH
Confidence 999998876543
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=4.9e-11 Score=108.11 Aligned_cols=223 Identities=13% Similarity=0.155 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
..+.--..+...|+|++|+....+.+...|++..+....-.++.+.+.|++|+...++-....-. ....+..+.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHHc
Confidence 34444456677899999999999999999999999999999999999999999655443322111 12236889999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC----Cchhhhccccccccccccc
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----DDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 315 (398)
+..++|+..++ ..++. +.......|.+++++++|++|+..|+...+......+ .++.......... +.+.+
T Consensus 93 nk~Dealk~~~---~~~~~-~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRL-DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSV 167 (652)
T ss_pred ccHHHHHHHHh---ccccc-chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhc
Confidence 99999999999 44565 6678888999999999999999999776543332222 1222221111111 22222
Q ss_pred cCC---CchHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CC-------ChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 316 KVD---PIQVELLLGKAYSDGGRVSDAVAVYDRLISSY--------PN-------DFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 316 ~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
... ..+..++.+.++...|+|.+|++.+++++.+. .. -..+...++.++..+|+.++|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 222 33567789999999999999999999995421 11 1236788999999999999999999
Q ss_pred HHHHhhCCCCh
Q 015907 378 IQARFFAPEKV 388 (398)
Q Consensus 378 ~~al~~~p~~~ 388 (398)
...+..+|-|.
T Consensus 248 ~~~i~~~~~D~ 258 (652)
T KOG2376|consen 248 VDIIKRNPADE 258 (652)
T ss_pred HHHHHhcCCCc
Confidence 99999887764
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.40 E-value=2.5e-10 Score=95.11 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=130.2
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 229 (398)
..+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 345678899999999999999999999999988876 5689999999999999999999999999998876 4578
Q ss_pred HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc
Q 015907 230 RLLGEVKYELK-----------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 230 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+.+|.++.... ...+|+..|+..+...|+ +..+ .+|...+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~-S~y~--------------~~A~~~l~~l~~~l------- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN-SEYA--------------EEAKKRLAELRNRL------- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT-STTH--------------HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC-chHH--------------HHHHHHHHHHHHHH-------
Confidence 88888876543 245788888888888887 4322 12222222221111
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAE 374 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~ 374 (398)
..-.+.+|..|.+.|.+..|+..++.+++..|+. .+++..++..|..+|..+.|.
T Consensus 141 ---------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 ---------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ---------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ---------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1234458999999999999999999999999997 468899999999999988554
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=3e-10 Score=101.24 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=127.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...++..+|.+.+++++.++|..+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45566788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++.+|+..++..+..+|+ ++..|..|+.+|..+|+..+|...+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~------------------------------ 431 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR------------------------------ 431 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH------------------------------
Confidence 888888888888888888888888 8888888888888888877766553
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+..|...|++++|+..+..+.+...
T Consensus 432 ------------AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 432 ------------AEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred ------------HHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 4556677888888888888877653
No 110
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=106.76 Aligned_cols=106 Identities=25% Similarity=0.262 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH--HHHHHHHhCCChHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL--LLGKAYSDGGRVSDA 339 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A 339 (398)
+-+..-|.-+...++|.+|+..|.+|++ ++|.++.+ +.+.+|.++|+++.|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~---------------------------l~P~nAVyycNRAAAy~~Lg~~~~A 134 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIE---------------------------LDPTNAVYYCNRAAAYSKLGEYEDA 134 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh---------------------------cCCCcchHHHHHHHHHHHhcchHHH
Confidence 3456678888999999999999999955 66665444 499999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 340 VAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 340 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++.++.++.++|.+..+|..||.+|..+|++++|++.|+++|+++|++...+.+|
T Consensus 135 VkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 135 VKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877765
No 111
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=3.6e-12 Score=110.61 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.+|..|.-..++++|+.++++-+.+... ...+++.||..+..+|..++|+.+.++.+++.
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3667776667777777777777666432 34567777777777777777777777776665
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=4.2e-10 Score=102.21 Aligned_cols=243 Identities=19% Similarity=0.151 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.-+..+.+....+++++|++...+++...|++.++++..+-.+ .+ ++.|..+.+.-.... ......+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----------~~~~~~f 83 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----------VINSFFF 83 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----------hcchhhH
Confidence 4456677777889999999999999999999999887622222 55 888885554432111 1111227
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+.|+++.+..++|+.+++ ..++.+..++...|.+++++|+|++|+..|+.+++.+.++.+........-... -
T Consensus 84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~ 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--A 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--h
Confidence 89999999999999999999 456667778999999999999999999999999998777665544333222111 0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV 322 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (398)
..+ . ..+.....|+...+.+++.+.++...|+|.+|++.+++++++....-. .+... .+.+..+-+-.
T Consensus 159 l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~------~~d~~----eEeie~el~~I 226 (652)
T KOG2376|consen 159 LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE------DEDTN----EEEIEEELNPI 226 (652)
T ss_pred hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc------ccccc----hhhHHHHHHHH
Confidence 011 1 344455555546788999999999999999999999999554432200 00000 00011111224
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
...++.++..+|+.++|...|...+..+|.|..
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 445999999999999999999999998887653
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=6.4e-11 Score=109.94 Aligned_cols=199 Identities=18% Similarity=0.100 Sum_probs=167.7
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|.....-..++..+...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3666667778999999999999999999874 5677889999999999999999999998 666777888777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
.+..... +|+++.++....+..+...+|......++|+++..+++...++
T Consensus 465 Dv~~d~s-------~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------------- 514 (777)
T KOG1128|consen 465 DVLHDPS-------LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI----------------------- 514 (777)
T ss_pred hhccChH-------HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc-----------------------
Confidence 7766554 4555555443336667788888888899999999999888552
Q ss_pred cccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 314 PQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 314 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..-....|+.+|.+..+.++++.|..+|..++.++|++.++|.+++..|...|+..+|...+++|++.+-++..+|.|
T Consensus 515 --nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN 592 (777)
T KOG1128|consen 515 --NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN 592 (777)
T ss_pred --CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence 222246778899999999999999999999999999999999999999999999999999999999999888888876
No 114
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-11 Score=106.79 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVG 371 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 371 (398)
+..+|..+...|..++|+.+.++.++..-. ...+..++...-...|..+
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 333677777777777777777776665321 2334555555555555443
No 115
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.31 E-value=9.2e-11 Score=89.12 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 468889999999999999999999999998876 5688999999999999999999999999988875 6789999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
|.++...|++++|+.++++++...|+ +..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG-SSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC-ChhHH
Confidence 99999999999999999999999998 65543
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=3.7e-09 Score=91.98 Aligned_cols=225 Identities=16% Similarity=0.075 Sum_probs=170.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKD 241 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 241 (398)
.-|..-+..|+|.+|.....+.-+..+....++..-+....++|+++.|-.++.++-+..++ ...+....+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34566677899999999999988877777778888889999999999999999999998443 35677788999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC--Cch--------hhhcccccc-cc
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--DDL--------SVKDGRSGD-KK 310 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~--------~~~~~~~~~-~~ 310 (398)
++.|.....++++..|. ++.++.....+|...|++.+....+.+..+.--.... ..+ ......... +.
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999 9999999999999999999999988776553222211 000 000000000 00
Q ss_pred ----c---cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH-------------------------------HhCCC
Q 015907 311 ----E---TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI-------------------------------SSYPN 352 (398)
Q Consensus 311 ----~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~p~ 352 (398)
+ ......+| .....++.-+...|++++|.+...+++ ..+|+
T Consensus 248 L~~~W~~~pr~lr~~p-~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 248 LKTWWKNQPRKLRNDP-ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHhccHHhhcCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 1 11111111 233336677778888888887766655 34688
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++..+..||..+.+.+.|.+|..+|+.++...|+..+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD 363 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh
Confidence 8899999999999999999999999999999887544
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=5.1e-10 Score=95.68 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=146.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDS-TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
+....+|..|+..++-.+..+.+.. ..-..+|.|++.+|+|++|+..|.-+.+.+.-+.+.+.+|+.|++.+|+|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4466789999999988776654443 566778999999999999999999988876667889999999999999999998
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLL 326 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (398)
....++ |+ ++-....+-.+..+.++-++-....... + +..+-...+
T Consensus 112 ~~~~ka----~k-~pL~~RLlfhlahklndEk~~~~fh~~L-q----------------------------D~~EdqLSL 157 (557)
T KOG3785|consen 112 SIAEKA----PK-TPLCIRLLFHLAHKLNDEKRILTFHSSL-Q----------------------------DTLEDQLSL 157 (557)
T ss_pred HHHhhC----CC-ChHHHHHHHHHHHHhCcHHHHHHHHHHH-h----------------------------hhHHHHHhH
Confidence 877664 55 5555555556666777655544443322 1 111233447
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+.++...-.|++|+++|.+.+..+|+....-..++.||.++.-++-+.+.+..-+...|+++-+.+
T Consensus 158 AsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 158 ASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 777777778999999999999988888888888999999999999999999988998998876654
No 118
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.2e-10 Score=96.78 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK---DYEGSAAAY 249 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 249 (398)
+.+.-+.-++..+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++.... ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999999999998887654 467899999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++++..+|. ++.+...||..++..|+|.+|+..++..+...+.
T Consensus 217 ~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999 9999999999999999999999999998775553
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.26 E-value=1.3e-10 Score=84.08 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46778888888899999999999988888888888888899998889999999999988888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 015907 240 KDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p 257 (398)
|+++.|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 889999888888887776
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.26 E-value=2.6e-10 Score=92.65 Aligned_cols=104 Identities=14% Similarity=0.254 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
+.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 5667788999999999999999999999999887654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHccC--------------HHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKD--------------YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~--------------~~~A~~~~~~al~~~p~ 258 (398)
+|.++...|+ +.+|++++++++..+|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 9999999887 56777777777777777
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=4.1e-10 Score=91.46 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
+....+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|. +...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHH
Confidence 3456688999999999999999999999999887653 468999999999999999999999999999999 899999
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a 287 (398)
.+|.++...|+...+...+..+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH
Confidence 9999999999887777665544
No 122
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=6e-11 Score=80.45 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 257 (398)
+.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444444555555555555555555555555544445555555555544 34555555555544444
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.7e-10 Score=100.81 Aligned_cols=199 Identities=16% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSIS-P-KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+...++..+...++.+.++..++..+... + .++.+....|.++...|++++|+..+.+. .+.+.......++
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~ 141 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQIL 141 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHH
Confidence 344444544444345666676666555432 2 24556666778888899999999988764 5678888888999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK--KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
..+++++.|.+.++.+-+.+.+ ..-+....+++....| ++.+|...|++...
T Consensus 142 L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------------------------- 195 (290)
T PF04733_consen 142 LKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD------------------------- 195 (290)
T ss_dssp HHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-------------------------
Confidence 9999999999999999888876 5555555555666655 69999999988632
Q ss_pred ccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChHH
Q 015907 315 QKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV-GDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 315 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 390 (398)
..+.. ....++.++..+|+|++|...+.+++..+|++++++.+++.+...+|+. +.+.+++.+....+|+++-+
T Consensus 196 --~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 196 --KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp --CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred --ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 22222 3334999999999999999999999999999999999999999999998 66778888888899987654
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=3.2e-10 Score=102.76 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+...|..++..|+|++|+.+|.++++++|+++.++..+|.++..+|++++|+..+++++.++|. ++.+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCchHHHHHHHHHHHH
Q 015907 275 KKPDEAVQFLLASRER 290 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~ 290 (398)
|++++|+..|++++++
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999763
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=3.2e-10 Score=91.79 Aligned_cols=117 Identities=8% Similarity=0.023 Sum_probs=95.6
Q ss_pred cHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 247 (398)
.+..+...+...++.++.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555556665555555554 5678999999999999999999999999887653 4589999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH-------HcCCchHHHHHHHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALL-------AAKKPDEAVQFLLASRER 290 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~-------~~~~~~~A~~~~~~a~~~ 290 (398)
+|++++.+.|. ....+..+|.++. ..|++++|+..+.++...
T Consensus 94 ~~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 94 YYFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999998 8888888888888 888988887777776554
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=6.4e-11 Score=80.28 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 223 (398)
++..|..+|.+++..|++++|+.+|.++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999987
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=3.2e-09 Score=90.87 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=160.1
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN 172 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g 172 (398)
.+++.-|+.+++-.+.......+...+-++.| +| +++|...|.-+...+ ..+...+.+++-+++-.|
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---------~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---------DAPAELGVNLACCKFYLG 105 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---------CCCcccchhHHHHHHHHH
Confidence 34455555555443332222222222225666 77 888888888776544 455567888888888888
Q ss_pred cHHHHHHHHHHHHh--------------cCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 173 VLQTRLKKYEETLS--------------ISP------------KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 173 ~~~~A~~~~~~~l~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
.|.+|...-.++-+ ++. +..+-...+|.+++..-.|++|++.|++++..+|+..
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 88888776655421 110 1112234455666666677777777777777777776
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC-CCCchhhhccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG-KSDDLSVKDGR 305 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~ 305 (398)
..-..++.||.++.-++-+.+.+.-.+...|+ .+.+....+..+++.=+-..|.........-.... |. ...+-+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f---~~~l~r 261 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF---IEYLCR 261 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh---HHHHHH
Confidence 66677777777777777777777777777777 66666666666555433333333332221111100 00 000000
Q ss_pred ccc---ccccccccCCC------chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 306 SGD---KKETEPQKVDP------IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 306 ~~~---~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
... ..-+.+++.-| .++..++...|.++++..+|...... ++|..+.-+...|.+....|+--...++
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 000 00111222223 25667789999999999999988764 6899999999999999999886555555
Q ss_pred HHHH
Q 015907 377 FIQA 380 (398)
Q Consensus 377 ~~~a 380 (398)
++-|
T Consensus 339 lKiA 342 (557)
T KOG3785|consen 339 LKIA 342 (557)
T ss_pred HHHH
Confidence 4433
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.1e-09 Score=91.59 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=156.2
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
+.+..+|++|++++..-.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..++..+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
....+... |.........-+.+....+++..+..+.++. -..+..+...+.|
T Consensus 100 V~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl---------------------------p~en~Ad~~in~g 151 (459)
T KOG4340|consen 100 VAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL---------------------------PSENEADGQINLG 151 (459)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhc---------------------------cCCCccchhccch
Confidence 88776543 2212334455566677788888887776443 1123346677799
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.+..+.|++++|+.-|+.+++...-.+-.-++++.+++..|++..|..+....++.
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999998888899999999999999999999887766653
No 129
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.21 E-value=1.3e-10 Score=101.64 Aligned_cols=203 Identities=18% Similarity=0.164 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-P-SDPDVFRLLGE 234 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~~la~ 234 (398)
.......+..++...|+++..+.-... ..+....+...++..+...++.+.++..++..+... + .++.+....|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 445667788889999998876655433 223345566677776665566777777666655432 2 23455566678
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++...|++++|++.+.+. . +.+.......++...++++.|.+.++.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-------------------------- 158 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----G-SLELLALAVQILLKMNRPDLAEKELKNMQ-------------------------- 158 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----T-CHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------------
T ss_pred HHHHcCCHHHHHHHHHcc-----C-cccHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Confidence 888899999999988764 4 78888889999999999999999998873
Q ss_pred ccCCCchHHHHHHH--HHHhCC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 315 QKVDPIQVELLLGK--AYSDGG--RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 315 ~~~~~~~~~~~la~--~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
..+.+.....++. +....| .+.+|..+|++..+..+.++..+..++.++..+|++++|...+++++..+|+++++
T Consensus 159 -~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 159 -QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp -CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred -hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 3444555555444 333344 69999999999888778899999999999999999999999999999999999999
Q ss_pred HHHhh
Q 015907 391 LVDQY 395 (398)
Q Consensus 391 ~~~l~ 395 (398)
+.|+.
T Consensus 238 LaNli 242 (290)
T PF04733_consen 238 LANLI 242 (290)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1e-09 Score=92.87 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
|++...|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++.+. ...++...+++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999887764 4568999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
||..+++.|+|.+|+..++..+...|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887
No 131
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.19 E-value=5.9e-10 Score=98.02 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SD----PDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 246 (398)
++++|...|.++ |.+|...|++++|.+.|.++....- ++ ...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 666666666654 6777788888888888888766432 11 23556666776665 999999
Q ss_pred HHHHHHHhhCCC-----CCHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 247 AAYRVSTMVSKD-----INFEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 247 ~~~~~al~~~p~-----~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+|++++.+.-. .-...+..+|.+|... |++++|+.+|+++......... .....
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-------------------~~~a~ 155 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-------------------PHSAA 155 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--------------------HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-------------------hhhHH
Confidence 999999886321 1244788899999998 9999999999999887653311 01112
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.....+|.++...|+|++|+..|++.....-++ ...++..+.|+...|++..|...+++....+|...
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 344559999999999999999999998753221 13566788899999999999999999999998653
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=3.8e-10 Score=99.24 Aligned_cols=205 Identities=14% Similarity=0.036 Sum_probs=139.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISP--KD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SD----PDVF 229 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 229 (398)
...|.+|...+++++|..+|.++....- ++ ..++...+.+|... ++++|+.+|++++.+.- +. ..++
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3346777888899999999988865431 11 34666777777665 99999999999998632 22 4578
Q ss_pred HHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 230 RLLGEVKYEL-KDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 230 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
..+|.+|... |++++|+++|++++.+.... ....+..+|.++...|+|++|+..|++........+.
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l------- 190 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL------- 190 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-------
Confidence 8999999998 99999999999999874221 1346788999999999999999999887663221100
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHH--HcCCHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-----RGYLAKGIILK--ENGKVGDAERM 376 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~--~~g~~~~A~~~ 376 (398)
........++..+.++...|++..|...+++....+|... .....+-.++. ....+.+|+.-
T Consensus 191 -----------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 191 -----------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp -----------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred -----------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 0111123444578899999999999999999999888653 33444444443 33457777777
Q ss_pred HHHHHhhCC
Q 015907 377 FIQARFFAP 385 (398)
Q Consensus 377 ~~~al~~~p 385 (398)
|...-.++|
T Consensus 260 ~d~~~~ld~ 268 (282)
T PF14938_consen 260 YDSISRLDN 268 (282)
T ss_dssp HTTSS---H
T ss_pred HcccCccHH
Confidence 776665554
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.18 E-value=2e-09 Score=84.70 Aligned_cols=122 Identities=18% Similarity=0.087 Sum_probs=104.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKY 237 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 237 (398)
........++...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3334446889999999999999999998 5678889999999999999999999999987655 357888999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..|++++|+..++.+ ...+- .+.++..+|.++...|++++|+..|+++
T Consensus 97 ~~~~~d~Al~~L~~~-~~~~~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 97 QQGQYDEALATLQQI-PDEAF-KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HcCCHHHHHHHHHhc-cCcch-HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999999773 22333 5778899999999999999999999876
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=2.8e-08 Score=88.31 Aligned_cols=233 Identities=11% Similarity=0.047 Sum_probs=189.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
++ +..|..+|++++..+ ..+...|...+.+-+.......|...+++++.+-|.-...|+....+--.+|+
T Consensus 86 q~e~~RARSv~ERALdvd---------~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD---------YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHHHHHHHHhcc---------cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 55 888999999999887 77888899999999999999999999999999999988899998888888999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..-|...|++.++..|+ ..+|......-..-++.+.|...|++.+-..|+ ...|...+..-...|+..-|...|.+|
T Consensus 157 i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999886 568888777778888999999999999988886 888999999999999999999999999
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND--FRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 365 (398)
...+.+. ..........|..-..++.++.|..+|.-++..-|.+ ...+-.+...-.
T Consensus 234 ie~~~~d----------------------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 234 IEFLGDD----------------------EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHhhhH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8765432 0011223336666678889999999999999988887 445555555555
Q ss_pred HcCCH---HHHH-----HHHHHHHhhCCCChHHHHHhh
Q 015907 366 ENGKV---GDAE-----RMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 366 ~~g~~---~~A~-----~~~~~al~~~p~~~~~~~~l~ 395 (398)
+-|+. ++++ -.|++.+..+|.|.++|++..
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 66664 3333 347888899999999998754
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.18 E-value=6.9e-11 Score=83.50 Aligned_cols=81 Identities=31% Similarity=0.473 Sum_probs=54.7
Q ss_pred hccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
.|+++.|+..|+++++..|. +...++.+|.+|+..|+|++|+.++++ .+.+|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777777764 345566677777777777777777777 666666666666677777777777777777
Q ss_pred HHHH
Q 015907 249 YRVS 252 (398)
Q Consensus 249 ~~~a 252 (398)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 136
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.17 E-value=1.6e-08 Score=104.35 Aligned_cols=255 Identities=15% Similarity=0.071 Sum_probs=136.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCCCC--HHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLS----ISPKD--STALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~--~~~~~~la~~ 201 (398)
.| ++.|...+..++... +.. .......++..+|.++...|++++|...+++++. ..+.. ..++..+|.+
T Consensus 465 ~g~~~~A~~~~~~al~~~---~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 465 DGDPEEAERLAELALAEL---PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred CCCHHHHHHHHHHHHhcC---CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45 555655555555421 000 0011224555566666666666666666555541 11111 2344555566
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKP-----S---DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD----INFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~la~ 269 (398)
+...|++++|...+++++.... . ....+..+|.++...|++++|...+.+++..... .....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6666666666666665555311 0 1123344555555566666666666655543211 01233444555
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCC-ch-----------hhhcccccc--ccccccccCCCc------hHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSD-DL-----------SVKDGRSGD--KKETEPQKVDPI------QVELLLGKA 329 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~-----------~~~~~~~~~--~~~~~~~~~~~~------~~~~~la~~ 329 (398)
++...|++++|...+.++.......... .. ....+.... ..+.......+. .....++.+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 6666666666666665554433222100 00 000000000 000000111101 113458999
Q ss_pred HHhCCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 330 YSDGGRVSDAVAVYDRLISSYP------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+...|++++|...+++++.... ....++..+|.++...|+.++|...+.+++.+....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999987532 234578899999999999999999999999986543
No 137
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=4.3e-09 Score=84.06 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..++..|..|-..|-+.-|...|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|....+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
..-|++.-|.+.+.+-.+.+|+ +|---..+- +-...-++.+|..-+.+-.+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~--------------------------- 194 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLY-LNEQKLDPKQAKTNLKQRAE--------------------------- 194 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCC-ChHHHHHHH-HHHhhCCHHHHHHHHHHHHH---------------------------
Confidence 9999999999999999999998 664222111 11233456667665533211
Q ss_pred CCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 317 VDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 317 ~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
....+.|-+ +...|...=..+ ..++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 195 ~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 195 KSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 111122322 332222211111 1222222222222 3567777777777888888877777766543
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=1.6e-09 Score=87.61 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.....|+.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..+++++.+.|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345678999999999999999999999999887763 45899999999999999999999999999999999999999
Q ss_pred HHHHH-------HccCHH-------HHHHHHHHHHhhCCC
Q 015907 233 GEVKY-------ELKDYE-------GSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~-------~~g~~~-------~A~~~~~~al~~~p~ 258 (398)
|.++. ..|+++ +|+.+|++++..+|.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 98888 777766 556666667777776
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=1.5e-09 Score=82.42 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRG 266 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~ 266 (398)
+..++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+.+|++++...|+. .+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999998876 5789999999999999999999999999998872 2678999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+|.++...|++++|+.++.+++...+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 99999999999999999999877544
No 140
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=1.6e-10 Score=77.18 Aligned_cols=64 Identities=20% Similarity=0.390 Sum_probs=60.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999985
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=2.8e-08 Score=88.40 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=181.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
..+...|...|..-..++++..|...|++++..+..+...|...+.+-++......|..++.+++.+-|.....|+....
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 56667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+-..+|+...|...|++-+...|+ ..+|......-.+.+..+.|...|++.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~--eqaW~sfI~fElRykeieraR~IYerf--------------------------- 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPD--EQAWLSFIKFELRYKEIERARSIYERF--------------------------- 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhhHHHHHHHHHHHH---------------------------
Confidence 999999999999999999999996 889999999999999999999999887
Q ss_pred ccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 315 QKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 315 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+-.+|. ..|...+..-.+.|+..-|..+|..|++.-.++ .......|..-..+..++.|.-.|+-|+..-|.+
T Consensus 201 V~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred heecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 334554 345558888899999999999999999865554 3456667777778889999999999999988876
No 142
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5.8e-09 Score=87.36 Aligned_cols=287 Identities=14% Similarity=0.071 Sum_probs=173.0
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
+.+...+.++.++++++....+..|.+.-.... +|.| .. +..|...|++.-.+. |......+..+.
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSl-LgyCYY~~Q~f~~AA~CYeQL~ql~---------P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSL-LGYCYYRLQEFALAAECYEQLGQLH---------PELEQYRLYQAQ 86 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHH
Confidence 344456778888888888877788766666666 6766 23 677777777776666 776666667777
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.++..+.+.+|+...........-...++..-+.+.+..+++..+..+.++.- ..++.....+.|.+.++.|+++.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHH
Confidence 77777777777776665543311112344445555666666666665554431 1245678889999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hcCCCCCchhhhccccccccccccccCCC---chH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER-LSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQV 322 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 322 (398)
+-|+.+++...- .+-.-++++.++++.++++.|+++..+.+.. ....|+-.+.....-.....+...+.... ..+
T Consensus 165 qkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 165 QKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred HHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 999999999877 8888899999999999999999999877654 44455533322221111111100000000 012
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSY--PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
....+.++.+.|+++.|.+.+...--.. .-++..+.+++..- ..+++.+..+-++-.+.++|--++.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHH
Confidence 2235566677777777665543221000 01233444444322 22334444444444555555333333
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=2.7e-10 Score=76.10 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 225 (398)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 355566666666666666666666666666666666666666666666666666666666654
No 144
>PRK15331 chaperone protein SicA; Provisional
Probab=99.14 E-value=1.5e-09 Score=83.93 Aligned_cols=103 Identities=8% Similarity=0.014 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
++.....+..|.-++..|++++|...|+-..-.+|.+++.|..||.++..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCC
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|+..+|+...|+.+|+.++. .|.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccc
Confidence 99999999999999999998 454
No 145
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=5.6e-09 Score=93.80 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHH---hccCCCCCCCCCCChHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 015907 131 VGVAVVIFGLVF---ALGDFLPSGSVSPTEEAGVVNKELSEEEK---------NVLQTRLKKYEETLSISPKDSTALEGA 198 (398)
Q Consensus 131 ~~~A~~~~~~a~---~~~~~~~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~l 198 (398)
...|..+|.+++ .++ |..+.++-.++.|+... .+..+|....+++++++|.++.++..+
T Consensus 274 ~~~Al~lf~ra~~~~~ld---------p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~ 344 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ---------TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHhhcccCC---------cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 788999999999 888 99999999999988765 356788999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH-HHHHHHHHHcCCc
Q 015907 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL-RGLTNALLAAKKP 277 (398)
Q Consensus 199 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~la~~~~~~~~~ 277 (398)
|.++...++++.|...|++++.++|+.+.+|+..|.+....|+.++|.+.++++++++|. ...+- ..+-.-.+-....
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~-~~~~~~~~~~~~~~~~~~~ 423 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR-RRKAVVIKECVDMYVPNPL 423 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch-hhHHHHHHHHHHHHcCCch
Confidence 999999999999999999999999999999999999999999999999999999999998 44332 2333213445667
Q ss_pred hHHHHHHHH
Q 015907 278 DEAVQFLLA 286 (398)
Q Consensus 278 ~~A~~~~~~ 286 (398)
+.|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 888888743
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=1e-09 Score=79.22 Aligned_cols=95 Identities=24% Similarity=0.307 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|. +..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~ 289 (398)
.|++++|...+.++.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988754
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.12 E-value=2.7e-08 Score=84.93 Aligned_cols=127 Identities=13% Similarity=0.015 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELG---------------D---YTRAVSLLQDL 218 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g---------------~---~~~A~~~~~~a 218 (398)
+.+.+|.+++..+++++|+..|++.++.+|++ +.+++.+|.++...+ | ..+|+..|++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999887 457888898865544 1 25788999999
Q ss_pred HHhCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCchH
Q 015907 219 AKEKPSDPDV-----------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 219 l~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~~ 279 (398)
++..|+...+ -+.+|..|.+.|.|..|+.-++.+++..|+. ..+++..++.+|...|..++
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 9999986321 2356788999999999999999999998873 46689999999999999999
Q ss_pred HHHHHHH
Q 015907 280 AVQFLLA 286 (398)
Q Consensus 280 A~~~~~~ 286 (398)
|..+...
T Consensus 231 a~~~~~~ 237 (243)
T PRK10866 231 ADKVAKI 237 (243)
T ss_pred HHHHHHH
Confidence 9987644
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.12 E-value=3.6e-09 Score=90.85 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 015907 157 EEAGVVNKELSE-EEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---DPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 229 (398)
....++..+..+ ...|+|++|+..|+..+..+|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 456778888876 56799999999999999999998 579999999999999999999999999998876 47889
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
+.+|.++..+|++++|+..|+++++..|+ ...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~-s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG-TDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHH
Confidence 99999999999999999999999999998 5543
No 149
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.12 E-value=1.9e-07 Score=79.61 Aligned_cols=223 Identities=22% Similarity=0.269 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCC--hHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcC
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPT--EEAGVVNKELSEEEKNVLQTRLKKYEETLS--ISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g 206 (398)
...+...+...+... +. ........+..+...+.+..+...+...+. ..+.....+...+..+...+
T Consensus 39 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 39 LAEALELLEEALELL---------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HHHHHHHHHHHHhcC---------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh
Confidence 444555555555444 33 356778888999999999999999999987 68888899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGE-VKYELKDYEGSAAAYRVSTMVSK--DINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
++..++..+..++...+.........+. ++...|+++.|...|.+++...| ..........+..+...++++.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 9999999999999988877555666666 89999999999999999988776 22566677777778899999999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
+.++....+.. ....+..++..+...+++++|+..+..++...|.....+..++..
T Consensus 190 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 190 LEKALKLNPDD------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHhhCccc------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 98886632210 235566699999999999999999999999999877888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Q 015907 364 LKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+...+.++++...+.+++...|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 246 LLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888899999999999999886
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.11 E-value=8.6e-09 Score=81.09 Aligned_cols=118 Identities=26% Similarity=0.287 Sum_probs=82.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCch
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~ 278 (398)
..+++..+...++.+++..|+. ..+.+.+|.++...|++++|+..|+.++...|+. ...+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5677888888888888888877 4567778888888888888888888888876551 1346677888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+|+..++.... ......+...+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~~~--------------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPD--------------------------EAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccC--------------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888744200 01111233447777777777777777777653
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.10 E-value=2.9e-10 Score=80.31 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPS--DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
.+|+|+.|+.+++++++..|. +...++.+|.+++..|++++|+.++++ ...+|. ++..++.+|.++..+|++++|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999995 466788899999999999999999999 888887 7888889999999999999999
Q ss_pred HHHHHH
Q 015907 282 QFLLAS 287 (398)
Q Consensus 282 ~~~~~a 287 (398)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999764
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.10 E-value=7.3e-09 Score=97.76 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=104.2
Q ss_pred hCCCCHHHH--HHHHHHHHHccC---HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch--------HHHHHHHHH
Q 015907 221 EKPSDPDVF--RLLGEVKYELKD---YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD--------EAVQFLLAS 287 (398)
Q Consensus 221 ~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~a 287 (398)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+ +..++..++.++.....+. .+.....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345555554 444555554433 77899999999999998 8888888877775543322 222222222
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
.. +..++. .++.-+|..+...|++++|...+++++.++| +..+|..+|.++.
T Consensus 411 ~a-------------------------l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~ 464 (517)
T PRK10153 411 VA-------------------------LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE 464 (517)
T ss_pred hh-------------------------cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 11 112333 3444588888889999999999999999999 5889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChH
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..|++++|++.|++|+.++|.++.
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999999874
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=1.5e-08 Score=91.06 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 015907 161 VVNKELSEEEKN---VLQTRLKKYEETL---SISPKDSTALEGAAVTLAEL---------GDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 161 ~~~la~~~~~~g---~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 225 (398)
.+..|......+ ..+.|+.+|.+++ +++|+...++..++.|+... .+..+|..+.+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366676665544 4678999999999 99999999999999998765 34568889999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+.++..+|.++...++++.|+..|++++.++|+ .+.+|+..|.+....|+.++|++.++++++
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999999999999999999999844
No 154
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.08 E-value=1.4e-08 Score=91.68 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=109.6
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
+-......++++.|+..|++..+.+|+ +...++.++...++..+|+..+.++++..|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 334455668999999999999988865 66779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.|+.+.++++...|. +...|..|+.+|...|+++.|+..+..+
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999 9999999999999999999999887544
No 155
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=5.8e-09 Score=91.47 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
.....|..+++.|+|..|...|++++..-+.. ..++.+++.|+.++++|.+|+..+.++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34567889999999999999999988753311 237899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHhc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA-VQFLLASRERLS 292 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~ 292 (398)
+..+++..|.++..+|+++.|+..|++++++.|. +-.+...+..+..+..++.+. .+.|..+.....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999 999999998888776666554 667776655443
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=2.1e-08 Score=94.69 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHcCCc
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL--------KDYEGSAAAYRVSTMV--SKDINFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~~la~~~~~~~~~ 277 (398)
...|+.+|+++++++|++..++-.++.++... .+...+....++++.+ +|. ++.++..+|..+...|++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~-~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV-LPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC-ChHHHHHHHHHHHhcCCH
Confidence 44555666666666666555555555544332 1233444444554443 444 455566666666666666
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++|...+++++. .+|. ..+..+|.++...|++++|+..|++++.++|.++.
T Consensus 437 ~~A~~~l~rAl~---------------------------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAID---------------------------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHH---------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 666666666644 2222 23444666666666666666666666666666553
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=99.04 E-value=3e-09 Score=82.31 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=97.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 184 TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 184 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
+..+.++..+..+..|.-++..|++++|..+|+-+...+|.+++.|..||.|+..+++|++|+..|..+..++++ ++..
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc
Confidence 344555667788999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.+..|.+++..|+.+.|..+|..++.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999988854
No 158
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=1.9e-07 Score=96.34 Aligned_cols=272 Identities=11% Similarity=-0.059 Sum_probs=179.5
Q ss_pred hcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 112 YDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 112 ~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
..+|.-...... +....| ++.+...+..+.....-................++.++...|++++|...+++++...|.
T Consensus 406 ~~~~~l~~~~a~-~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 484 (903)
T PRK04841 406 LENPRLVLLQAW-LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL 484 (903)
T ss_pred hcCcchHHHHHH-HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 345665554433 333466 888888888775442111100011224556667899999999999999999999986554
Q ss_pred CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 191 DS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 191 ~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
.. .++..+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++......
T Consensus 485 ~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 485 TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 32 356788999999999999999999998764321 2456788999999999999999999998863210
Q ss_pred -------CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC----------Cchhhhcccccc--cccccccc----
Q 015907 260 -------NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------DDLSVKDGRSGD--KKETEPQK---- 316 (398)
Q Consensus 260 -------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~---- 316 (398)
....+..+|.++...|++++|...+.++......... +.+....++... ..+..+..
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 1234567899999999999999999998876553322 111222232222 11111110
Q ss_pred CC-CchHHHH----HHHHHHhCCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 317 VD-PIQVELL----LGKAYSDGGRVSDAVAVYDRLISSYPNDF----RGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 317 ~~-~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
.. +...... ....+...|+.+.|..++.......+... ..+..++.++...|++++|...+++++...
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 645 GRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred ccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00 1111111 22445567899999998877654322222 225689999999999999999999998763
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.1e-09 Score=92.37 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
...|..|++.|+|..|...|++++..+......+.. ..+.......-.+.+++.|+.++++|.+|+..+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~e----------e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEE----------EQKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHH----------HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 345566666666666666666665554432110000 0000001112356679999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 345 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++|+++|++..+++..|.++..+|+++.|+..|+++++++|+|..+...+.
T Consensus 282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI 332 (397)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999987766553
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=4.1e-08 Score=81.82 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcC-
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELG- 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g- 206 (398)
+..|+..|..++... | .+|-.+.+.+.+|.+++..|+++.|+..|++.+...|+++ .+++.+|.+++.+.
T Consensus 21 y~~Ai~~f~~l~~~~---P---~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRY---P---NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHHHHHHHHHHHH----T---TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC---C---CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 555555555554333 0 0144556788999999999999999999999999999874 58888888876543
Q ss_pred ----------CHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 207 ----------DYTRAVSLLQDLAKEKPSDPDV-----------------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 207 ----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
...+|+..|+..++..|+...+ -+.+|..|...|.+..|+..++.+++..|+.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 3458999999999999987422 3456888999999999999999999999982
Q ss_pred --CHHHHHHHHHHHHHcCCchHHH
Q 015907 260 --NFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~~A~ 281 (398)
..+++..++.++...|..+.|.
T Consensus 175 ~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 175 PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHhCChHHHH
Confidence 2347889999999999988544
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.00 E-value=9e-10 Score=93.76 Aligned_cols=225 Identities=8% Similarity=-0.031 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.-..|..|+.+|.|++|+.||.+++..+|.++..+.+.|.+|+++..|..|...+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHH----------HHHHHhcCCCCCchhhhcccccc--
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLL----------ASRERLSTGKSDDLSVKDGRSGD-- 308 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~-- 308 (398)
...+|.+.++.++.+.|+ +.+....++.+-. ..++..... ...+.++....+......+....
T Consensus 180 ~~~EAKkD~E~vL~LEP~-~~ELkK~~a~i~S----l~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK-NIELKKSLARINS----LRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred hHHHHHHhHHHHHhhCcc-cHHHHHHHHHhcc----hHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccce
Confidence 999999999999999999 7765554443322 222111100 00111111111111111111111
Q ss_pred ccccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 309 KKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++......+.....+. -+..|....++++|+.-..+++..+|.........+..---.|...++...++.++.+.|.+
T Consensus 255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 22222222222211111 25667777788888888888887777665555555555556677778888888888888876
Q ss_pred hHH
Q 015907 388 VKA 390 (398)
Q Consensus 388 ~~~ 390 (398)
..+
T Consensus 335 ~~~ 337 (536)
T KOG4648|consen 335 ETP 337 (536)
T ss_pred ccc
Confidence 544
No 162
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=3.8e-08 Score=78.77 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=135.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.|+. .| ...|..-|.+++++. |..+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|.
T Consensus 71 RGvlYDSlGL~~LAR~DftQaLai~---------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 71 RGVLYDSLGLRALARNDFSQALAIR---------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred hcchhhhhhHHHHHhhhhhhhhhcC---------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 5666 78 889999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHHcCCchH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY-RVSTMVSKDINFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~~la~~~~~~~~~~~ 279 (398)
.++--|+|.-|.+-+.+..+.+|++|---..+-..- ..-++.+|...+ +++-..+.+ ...|...+. ..|+..+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e--~WG~~iV~~---yLgkiS~ 215 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE--QWGWNIVEF---YLGKISE 215 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh--hhhHHHHHH---HHhhccH
Confidence 999999999999999999999999874322221111 223566665544 444443322 233322222 2233221
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 280 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
...++++..-..++.. ....-.+.++.+|..+...|+.++|...|.-++..+-
T Consensus 216 -e~l~~~~~a~a~~n~~------------------~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 216 -ETLMERLKADATDNTS------------------LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -HHHHHHHHhhccchHH------------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1223232221111100 0011135677899999999999999999999987543
No 163
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=3.6e-07 Score=84.37 Aligned_cols=226 Identities=12% Similarity=0.109 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------------------------------------------------
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSIS------------------------------------------------- 188 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------------------------------------------------- 188 (398)
...|..+|..|.+.|.+++|...|++++..-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 3578899999999999999999999887531
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHccCHHH
Q 015907 189 ------------------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAK-EKPSD-----PDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 189 ------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~ 244 (398)
|++..-|.. .+-...|+..+-+..|..+++ .+|.. ...|..+|..|...|+.+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 111111211 222334667777777777765 35532 3578899999999999999
Q ss_pred HHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 245 SAAAYRVSTMVSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 245 A~~~~~~al~~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
|...|+++++..-.. -..+|...|..-....+++.|+.+++.+... |..+. + ..+....-.++.-.....
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~--~----~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPE--L----EYYDNSEPVQARLHRSLK 478 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchh--h----hhhcCCCcHHHHHHHhHH
Confidence 999999998875331 2457888888888999999999998887543 22211 0 000000000000000012
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA--PEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 392 (398)
+|..++......|-++....+|++.+++.--.|....+.|..+....-++++.+.|++.+.+. |.-.+.|+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 333355555555666666666666666555555566666666655555566666555555543 34444444
No 164
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.97 E-value=6.1e-08 Score=83.42 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA 159 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~ 159 (398)
.++...+.......++|+....+.+..-.+....+. ++|.. .| +.+++.+-...+.. ..+..+......
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~-~lG~l~~a~s~~g~y~~mL~~a~sqi~~---a~~~~ds~~~~e 84 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFR-VLGCLVTAHSEMGRYKEMLKFAVSQIDT---ARELEDSDFLLE 84 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344455555566666777777666655433333333 36655 33 44333332222211 111111223346
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 228 (398)
++.+++..+....++.+++.+-...+.+.... ..+...++..+.-++.++++++.|+++++....+ ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 78899999999999999999888888764333 2467779999999999999999999999875432 347
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---C------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---N------FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
+..||..+....++++|+-+..++.++.... + .-+++.++..+..+|..-.|.++.+++.++.-..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~----- 239 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH----- 239 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-----
Confidence 8899999999999999999999998874321 2 2256788999999999999999999987753222
Q ss_pred hhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCH-
Q 015907 300 SVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKV- 370 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~- 370 (398)
...+.. ....+|++|...|+.+.|..-|++++..-.. ...++...+.++....-.
T Consensus 240 ----------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~ 303 (518)
T KOG1941|consen 240 ----------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQN 303 (518)
T ss_pred ----------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 111112 2223999999999999999999999864321 234555555555443322
Q ss_pred ----HHHHHHHHHHHhhCC
Q 015907 371 ----GDAERMFIQARFFAP 385 (398)
Q Consensus 371 ----~~A~~~~~~al~~~p 385 (398)
-.|+++-++++++..
T Consensus 304 k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 304 KICNCRALEFNTRLLEVAS 322 (518)
T ss_pred cccccchhHHHHHHHHHHH
Confidence 337777777776543
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=2.9e-07 Score=91.76 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=185.0
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCCHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-SPKD----STALEGAAVTLAELGDYTR 210 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----~~~~~~la~~~~~~g~~~~ 210 (398)
.-|.+.+.-. |+....|...-.-+.+.++.+.|....++++.. ++.. ..+|..+-++...-|.-+.
T Consensus 1445 eDferlvrss---------PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1445 EDFERLVRSS---------PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred HHHHHHHhcC---------CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 3455555555 999999999888899999999999999999974 4433 3466666666666787788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
-.+.|++|.+... ...++..|..+|...+.+++|.++|+..++...+ ...+|..++..++.+++-+.|..++.+|++.
T Consensus 1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 8889999988643 2467888999999999999999999999999887 8999999999999999999999999999886
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKV 370 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 370 (398)
++.. ..-......|.+-++.|+.+.+...|+-.+.-+|.-.+.|.-+...-.+.|+.
T Consensus 1594 lPk~-----------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1594 LPKQ-----------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred cchh-----------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 6532 11233444889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhC--CCChHHHHH
Q 015907 371 GDAERMFIQARFFA--PEKVKALVD 393 (398)
Q Consensus 371 ~~A~~~~~~al~~~--p~~~~~~~~ 393 (398)
+.+..+|++++.+. |.....++.
T Consensus 1651 ~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1651 KYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHHHHHHHHHHhcCCChhHhHHHHH
Confidence 99999999998764 544444443
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.96 E-value=1.1e-06 Score=73.20 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=138.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 229 (398)
..+..|+..|......|++++|+..|+.+...+|..+ .+...++.++++.+++++|+...++.+.+.|.++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3456899999999999999999999999999888764 5889999999999999999999999999988764 467
Q ss_pred HHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 230 RLLGEVKYEL--------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 230 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
+..|.+++.. .-..+|+..|+..+...|+ ..-+-. |..-+..+...
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn-S~Ya~d--------------A~~~i~~~~d~----------- 165 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN-SRYAPD--------------AKARIVKLNDA----------- 165 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC-Ccchhh--------------HHHHHHHHHHH-----------
Confidence 7777776542 2245677788888888887 322111 11111000000
Q ss_pred hccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 302 KDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
-..-...+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.
T Consensus 166 -----------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 166 -----------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred -----------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 01222348889999999999999999999877765 4678888889999999988877654
Q ss_pred HHHhhCCCC
Q 015907 379 QARFFAPEK 387 (398)
Q Consensus 379 ~al~~~p~~ 387 (398)
-.-.-.|++
T Consensus 229 vl~~N~p~s 237 (254)
T COG4105 229 VLGANYPDS 237 (254)
T ss_pred HHHhcCCCC
Confidence 433334554
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.96 E-value=2.7e-08 Score=85.54 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred HHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 261 FEVLRGLTNAL-LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 261 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
...++..+..+ ...|+|++|+..|+..++..|.. .....+++|+|.+|...|++++|
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----------------------~~a~~A~y~LG~~y~~~g~~~~A 199 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----------------------TYQPNANYWLGQLNYNKGKKDDA 199 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----------------------cchHHHHHHHHHHHHHcCCHHHH
Confidence 34555555554 45577777777776665544322 11135667777777777777777
Q ss_pred HHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 340 VAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 340 ~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
+..|++++..+|++ +++++.+|.++..+|++++|+..|+++++..|+...+
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77777777776664 6677777888877888888888888888877776654
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.6e-07 Score=76.46 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=67.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
|.++..-|++++|++..... . +.++...-..++.++.+.+-|...++++..
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~-~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----------------------- 165 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----E-NLEAAALNVQILLKMHRFDLAEKELKKMQQ----------------------- 165 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------------
Confidence 45566666666666655542 1 344444445555555666666666555422
Q ss_pred ccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 313 EPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
.+.......||..+.. .+++.+|.-+|++.-+..|..+......+.|+..+|++++|...++.++..+++++
T Consensus 166 ----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 166 ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred ----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 2222223334433322 23455555555555554455555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 015907 389 KALVDQ 394 (398)
Q Consensus 389 ~~~~~l 394 (398)
+.+.|+
T Consensus 242 etL~Nl 247 (299)
T KOG3081|consen 242 ETLANL 247 (299)
T ss_pred HHHHHH
Confidence 555554
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=3.4e-09 Score=71.48 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=42.7
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 355666666666666666666666666666666666666666666666666666666555555543
No 170
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=2e-06 Score=82.42 Aligned_cols=244 Identities=15% Similarity=0.051 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 84 FEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
++.|++.+......+++..|+....++++.+|+.+.+ ...
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a----------------------------------------~vL 48 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYA----------------------------------------KVL 48 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHH----------------------------------------HHH
Confidence 4556666666667777777777777777777655443 334
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.|..+.+.|..++|..+++..-...+++...+..+-.+|..++++++|..+|++++..+|. .+..+.+-.+|.+.+.|.
T Consensus 49 kaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHH
Confidence 5677778888888887777777777777778888888888888888888888888888887 667777777777777776
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHH-----HHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-----FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
+-.+.--+..+..|......|..+..++......++... +-+++.+.. +...
T Consensus 128 ~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~-----------------------l~~~ 184 (932)
T KOG2053|consen 128 KQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL-----------------------LEKK 184 (932)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH-----------------------hccC
Confidence 655555555556676223345555555555444444433 111111110 1111
Q ss_pred -C--chHH-HHHHHHHHhCCChHHHHHHHHH-HHH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 319 -P--IQVE-LLLGKAYSDGGRVSDAVAVYDR-LIS-SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 319 -~--~~~~-~~la~~~~~~g~~~~A~~~~~~-al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+ .... ...-.++..+|++++|+.++.. ..+ +.+.+...-......+...+++.+-.+...+++..++|+..++
T Consensus 185 gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~ 263 (932)
T KOG2053|consen 185 GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIY 263 (932)
T ss_pred CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHH
Confidence 1 1111 2245667788999999999943 333 3444555555677788899999999999999999999984443
No 171
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=1.3e-06 Score=80.71 Aligned_cols=258 Identities=12% Similarity=0.091 Sum_probs=189.4
Q ss_pred hhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 015907 110 IDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSIS 188 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 188 (398)
++..+|++.+.|+....+..| ..+-+..|..++..-+.... .......|...|..|...|+.+.|...|+++.+..
T Consensus 341 lLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka---~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKA---VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccC---CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 567888888888763333366 77888888888754422222 12334679999999999999999999999999875
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHH
Q 015907 189 PKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------------------DPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 189 p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~~~~A~ 246 (398)
-.. ..+|...|..-....+++.|+.+.+++...-.. ...+|..++......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 433 568999999999999999999999998754211 1346788888888899999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVEL 324 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 324 (398)
..|++++.+.-- .|....+.|..+....-++++.+.|++.+.++ .-|. +.|.
T Consensus 498 ~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF-------------------------k~p~v~diW~ 551 (835)
T KOG2047|consen 498 AVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF-------------------------KWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-------------------------CCccHHHHHH
Confidence 999999998877 88999999999999999999999998875533 2233 3443
Q ss_pred H-HHHH--HHhCCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCChHHHHHhhh
Q 015907 325 L-LGKA--YSDGGRVSDAVAVYDRLISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARFF-APEKVKALVDQYS 396 (398)
Q Consensus 325 ~-la~~--~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 396 (398)
. |-.. -......+.|...|+++++..|.. -.++...+..-.+-|--..|+..|++|-.. .+.+.-.++|.|-
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 3322 233446889999999999987743 235566677777778888888888887543 3333334444443
No 172
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=5.4e-08 Score=81.54 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
.-.|..+.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|+|+.|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 337899999999999999999999999999987 6799999999999999999999999999987765 6899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
|.+...+|+.++|...|+++++..|+ ...+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~-t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG-TDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 99999999999999999999999998 55544
No 173
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.91 E-value=5.2e-08 Score=72.72 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---DPDVFRLLG 233 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 233 (398)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 56677777777777777777777777754433 346777777777777777777777777776666 556666677
Q ss_pred HHHHHccCHHHHHHHHHHHHh
Q 015907 234 EVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++...|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766554
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.91 E-value=5.7e-06 Score=72.31 Aligned_cols=261 Identities=17% Similarity=0.112 Sum_probs=197.0
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhc-chh-----hc-HHHHHHHHHHHHhccCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGL-GTK-----IG-VGVAVVIFGLVFALGDFLPSGS 152 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~l-g~~-----~g-~~~A~~~~~~a~~~~~~~~~~~ 152 (398)
+|..-.-++-.......++++++|.+-|+.++.. ++...+|+ |+. .| .+.|..+-+.+....
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------- 184 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------- 184 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-------
Confidence 3444445566667777899999999999988743 33332222 222 78 899999999998888
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SPKDST-----ALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
|.-+.++...-...+..|+|+.|+++.+..... .++..+ .+...+... ...+...|...-.+++++.|+
T Consensus 185 --p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 185 --PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPD 261 (531)
T ss_pred --cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCc
Confidence 999888888888889999999999999876543 222211 222222222 345788999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
...+-..-+..++..|+..++-.+++.+.+..|. ++ ++.+|....--+.++.-++++.++..
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~----ia~lY~~ar~gdta~dRlkRa~~L~s------------ 323 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PD----IALLYVRARSGDTALDRLKRAKKLES------------ 323 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hH----HHHHHHHhcCCCcHHHHHHHHHHHHh------------
Confidence 9888888999999999999999999999999986 44 45556666666677888887766543
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARFF 383 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 383 (398)
+..+.....+.++..-...|++..|..--+.+....|.. .++..++.+-... |+-.+...++-+++.-
T Consensus 324 ----------lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 ----------LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ----------cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 233344555668888899999999999999999988864 5677788887655 9999999999999863
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=8e-09 Score=69.65 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=61.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+ ++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~-~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD-NPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT-HHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-HHHHHHHHhc
Confidence 357899999999999999999999999999999999999999999999999999999 7877776664
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.88 E-value=7.5e-06 Score=69.58 Aligned_cols=220 Identities=21% Similarity=0.228 Sum_probs=170.9
Q ss_pred HhHHHHHHhhcchhhcCCCc--hhhhhhhcchh---hc-HHHHHHHHHHHHh--ccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIE--TEKKTIGLGTK---IG-VGVAVVIFGLVFA--LGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~--~~~~~~~lg~~---~g-~~~A~~~~~~a~~--~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
.....+...+...+...+.. ...... .+.. .+ +..+...+..... .. +.....+...+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 106 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLL-LALALLKLGRLEEALELLEKALELELL---------PNLAEALLNLGLLLE 106 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHH-HHHHHHHcccHHHHHHHHHHHHhhhhc---------cchHHHHHHHHHHHH
Confidence 34445556666666655542 222222 2222 45 7777777777765 34 778888999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAV-TLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A 245 (398)
..+++..++..+..++...+.........+. ++...|+++.|...+.+++...| .....+...+..+...++++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 9999999999999999988887666666666 89999999999999999988776 3456667777778889999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH
Q 015907 246 AAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL 325 (398)
Q Consensus 246 ~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
+..+.+++...+......+..++..+...+++++|+..+..+....+ ........
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------~~~~~~~~ 241 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-------------------------DNAEALYN 241 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc-------------------------ccHHHHhh
Confidence 99999999998872378899999999999999999999988855222 11244555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
++..+...+.++++...+.+++...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 777777778899999999999999887
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.87 E-value=1.6e-07 Score=71.16 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVF 229 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 229 (398)
..+..++..|...+..|+|++|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 345678999999999999999999999999988765 56899999999999999999999999999999774 578
Q ss_pred HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCC
Q 015907 230 RLLGEVKYELKD---------------YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 230 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~ 258 (398)
+..|.+++.+.. ...|...|++++...|+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999988776 77888888888888887
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.86 E-value=6.6e-08 Score=87.44 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=103.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.+ ++.|+.+|++..... |. +...++.++...++-.+|+..+.+++...|.+...+...+..+...++
T Consensus 182 t~~~~~ai~lle~L~~~~---------pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD---------PE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred cccHHHHHHHHHHHHhcC---------Cc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 45 999999999988555 44 567789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
++.|+.+.+++++..|.+...|+.|+.+|...|+++.|+..++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999998887543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.85 E-value=2.2e-08 Score=68.51 Aligned_cols=64 Identities=25% Similarity=0.321 Sum_probs=33.7
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
.++...+++++|+.++++++..+|+++..|..+|.++..+|++.+|+..++++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555544443
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=3.1e-08 Score=67.80 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=63.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+|...+++++|+.++++++.++|+++..|..+|.++..+|++.+|+..|+++++..|+ ++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~-~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD-DPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999998 777655444
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.83 E-value=1.3e-07 Score=70.63 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
.+++.++.++...|+.++|+.+|++++..... ......+++.+|..+..+|++++|+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------------~~~~~~a~i~lastlr~LG~~deA~~ 59 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS----------------------GADRRRALIQLASTLRNLGRYDEALA 59 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------------chHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46889999999999999999999999762110 11113466779999999999999999
Q ss_pred HHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 342 VYDRLISSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 342 ~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.+++++...|+ +..+...++.++...|+.++|+..+-.++.
T Consensus 60 ~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 60 LLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999898 778888999999999999999999988775
No 182
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=9.5e-07 Score=88.20 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=165.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSD----PDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
+..+.|++.+..+|+....|..+-..+.+.++.++|.+..+++|.. ++.. ..+|..+-++...-|.-+.-.+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3467788899999999999999999999999999999999999984 4432 3466666666666677888889999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAY 330 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 330 (398)
+|.+... ...++..|..+|...+++++|.++|+.+.+.+.+ ...+|..+|..+
T Consensus 1522 RAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-------------------------~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1522 RACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-------------------------TRKVWIMYADFL 1574 (1710)
T ss_pred HHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-------------------------hhhHHHHHHHHH
Confidence 9988764 3678899999999999999999999999886542 246888899999
Q ss_pred HhCCChHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 331 SDGGRVSDAVAVYDRLISSYPN--DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 331 ~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++++-+.|...+.+|++.-|. ..+.....+++-++.|+.+.+...|+-.+..+|...+.|.-.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH
Confidence 9999999999999999999998 688888999999999999999999999999999999998743
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=8.3e-08 Score=75.83 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
.+-.-|.-++..|+|++|..-|..++...|..+ ..|.+.|.+++.++.++.|+..+.++++++|.+..++...+.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 344567888999999999999999999998764 377889999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|..+..+++|+..|.++++.+|. ...+...++.+--
T Consensus 177 ayek~ek~eealeDyKki~E~dPs-~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPS-RREAREAIARLPP 213 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHhcCH
Confidence 999999999999999999999998 6666665555443
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.81 E-value=1.5e-07 Score=78.95 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVY 343 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 343 (398)
.+..+.-++..|+|..|...|...++..+.. ....++++|||.+++.+|++++|...|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s----------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS----------------------TYTPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------cccchhHHHHHHHHHhcccchHHHHHH
Confidence 5677777777888888888887776655533 344689999999999999999999999
Q ss_pred HHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 344 DRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 344 ~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..+++..|+. +++++.+|.+...+|+.++|...|+++++..|+...+...
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999988776 6899999999999999999999999999999998776543
No 185
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.81 E-value=6.7e-07 Score=77.18 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSI----SPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVF 229 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 229 (398)
+-.+..+..+.|.|++++.+--..+.. +.. .-+++.+++..+....++.+++.+-+..+.+-... ..+.
T Consensus 46 lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~ 125 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS 125 (518)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh
Confidence 334556777788888776654443332 211 14588899999999999999999988888764332 3567
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
..++..+..++.++++++.|+++++...+ ....++..||.++....++++|+.+..++..+.....-.++
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~----- 200 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW----- 200 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----
Confidence 78999999999999999999999987533 12347889999999999999999999998876553310000
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY------PNDFRGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
......-..+.++..+..+|+...|.++.+++.++. +.......-+|.+|...|+.+.|..-|+
T Consensus 201 ----------~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 201 ----------SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred ----------hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 000001234458999999999999999999998753 2235677889999999999999999999
Q ss_pred HHHhhC
Q 015907 379 QARFFA 384 (398)
Q Consensus 379 ~al~~~ 384 (398)
+|....
T Consensus 271 ~Am~~m 276 (518)
T KOG1941|consen 271 QAMGTM 276 (518)
T ss_pred HHHHHH
Confidence 988653
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.81 E-value=2.3e-06 Score=67.04 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=98.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
.+.=|++....-..+.+...|.. .-.+.||..+.+.|++.+|...|++++.- .-+ ++..+..++.+.+..+++..|.
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHH
Confidence 33445555555555555555653 34456777777778888888877777653 333 6677777777777788877777
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..+++..+.-+. ....+....+|.++..+|++.+|...|+.++...|+ +.+...++
T Consensus 145 ~tLe~l~e~~pa-----------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~ 200 (251)
T COG4700 145 QTLEDLMEYNPA-----------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYA 200 (251)
T ss_pred HHHHHHhhcCCc-----------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence 777665332211 112355666788888888888888888888887764 55666777
Q ss_pred HHHHHcCCHHHHHHHHH
Q 015907 362 IILKENGKVGDAERMFI 378 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~ 378 (398)
..+..+|+.++|...+.
T Consensus 201 e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 201 EMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHhcchhHHHHHHH
Confidence 78888887766655443
No 187
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.80 E-value=3.2e-07 Score=69.59 Aligned_cols=112 Identities=28% Similarity=0.263 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV 336 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 336 (398)
|+..+..++.-|...+..|+|++|++.|+......+.. .....+.+.++.+|...+++
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----------------------~ya~qAqL~l~yayy~~~~y 63 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG----------------------EYAEQAQLDLAYAYYKQGDY 63 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----------------------cccHHHHHHHHHHHHHccCH
Confidence 44456778888888888888888888887776554422 22346777789999999999
Q ss_pred HHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCChHH
Q 015907 337 SDAVAVYDRLISSYPNDF---RGYLAKGIILKENGK---------------VGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 337 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 390 (398)
++|+..+++.++++|.++ -+++..|.++..+.. ..+|...|++.+...|++..+
T Consensus 64 ~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 64 EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999999888774 478888888888776 789999999999999998654
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.3e-06 Score=70.77 Aligned_cols=213 Identities=14% Similarity=0.062 Sum_probs=158.4
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------------------S-TALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
+....|...-.++.....+++|..-++..-.++..+ | ......|.+....|+..+.+.-+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~ 146 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLH 146 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 344566666667777777777777666655443211 1 123445666677788887766554
Q ss_pred HHHHh------------CCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 217 DLAKE------------KPSD---------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 217 ~al~~------------~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
..... .|+. ..+.+.+..++.-.|+|.-....+.+.++.+|...+.....+|.+..+.|
T Consensus 147 ~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 147 KLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 44321 1111 12455677888889999999999999999996658889999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
+.+.|..+|+...+....-.+ .....-+..+.+.+|.-.+++.+|...|.+++..+|.++.
T Consensus 227 D~k~a~~yf~~vek~~~kL~~-------------------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDG-------------------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhc-------------------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 999999999977653321100 0111234445888899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+..+.|.|+.-.|+..+|++.++.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999974
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.76 E-value=1.2e-06 Score=68.70 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLS-ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRLLGEV 235 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 235 (398)
.-.+.+|....+.|++.+|...|++++. +..+++..+..++...+..+++..|...++++.+.+|. .++....+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4577899999999999999999999986 56778899999999999999999999999999998874 46788889999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|.+.+|...|+.++.-.|+ +.+....+..+..+|+.++|..-+....+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg--~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPG--PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCC--HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999999999999999999996 88888899999999999988887765544
No 190
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.70 E-value=2.3e-07 Score=83.46 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
..|+++.+|+++|.++...|+|++|+.+|+++++++|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 458888888888888888888888888888888888888754 888888888888888888888888886
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.66 E-value=5.8e-07 Score=80.99 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDV---FRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
.+|+++.+++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999854 9999999999999999999999999973
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=2.4e-07 Score=73.32 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.+.+.|.++.+++.++.|+..+.++++++|.+..++...+.+|.++..+++|++-|++.++.+|...++.-
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 44458999999999999999999999999999999999999999999999999999999999999876543
No 193
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=6.6e-06 Score=66.95 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHccCHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP-----S-DPDVFRLLGEVKYELKDYEGS 245 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~-~~~~~~~la~~~~~~g~~~~A 245 (398)
+.+++|.++|.++ |..|...++|..|-..|.++-+..- + -...|...+.+|.. +++.+|
T Consensus 28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEA 92 (288)
T ss_pred cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHH
Confidence 4677777777765 4445555666666666666554321 1 13345555565554 589999
Q ss_pred HHHHHHHHhhCCCC-----CHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 246 AAAYRVSTMVSKDI-----NFEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 246 ~~~~~~al~~~p~~-----~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
+.++++++++..+. -...+..+|.+|..- .++++|+.+|+++-........ ....
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-------------------~ssA 153 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-------------------VSSA 153 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-------------------hhhH
Confidence 99999998886541 122355788888654 8999999999998775543310 0111
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF-------RGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+...+-.+..-...++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++-.+++|...+.+
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 12333377777888999999999999887554442 3455677788887888888899999999999876654
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.61 E-value=3.5e-06 Score=61.97 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVK 236 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 236 (398)
+-..|....+.|+++.|++.|.+++.+.|..+.+|.+.+..+..+|+.++|++-+.+++++.... ..++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999999999999986543 35788899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCC
Q 015907 237 YELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..+|+-+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887754
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.57 E-value=7.2e-08 Score=82.44 Aligned_cols=191 Identities=10% Similarity=-0.022 Sum_probs=139.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+...|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+.+|+.++.+..|...+..++.++.. +..+|...+.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence 5667999999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCCC-Cchhhhcccccc-ccccccc-cCCCc---hHH----HHHHHHHHhCCChHHHHHHHH
Q 015907 275 KKPDEAVQFLLASRERLSTGKS-DDLSVKDGRSGD-KKETEPQ-KVDPI---QVE----LLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~---~~~----~~la~~~~~~g~~~~A~~~~~ 344 (398)
|...+|.+.++.++.+-+...+ ......+..+.+ ....++. ...|. ... ---|..+...|.++.++.+|.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~ 258 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVV 258 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEee
Confidence 9999999999998887666432 001111111111 1111111 00000 000 115666777788888888877
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 345 RLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 345 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.-+....++.....+ +..|.+..++++++.-..+++..+|..
T Consensus 259 ~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 259 SPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred ccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 666554444444444 667777788888888888888777654
No 196
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=7.8e-05 Score=62.16 Aligned_cols=195 Identities=16% Similarity=0.134 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLS-ISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+...++.....-++.+.-+.-+.+.+. ..-. +......-|.+|.+.|++++|+...... .+.++...-..++.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHH
Confidence 334444444444454444444443333 2222 2344555668899999999999988773 34556666678888
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
++.+.+-|....+++..++.+ ..+..|+.++.. .+++.+|.-+|+..-.
T Consensus 149 k~~r~d~A~~~lk~mq~ided---~tLtQLA~awv~la~ggek~qdAfyifeE~s~------------------------ 201 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDED---ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE------------------------ 201 (299)
T ss_pred HHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc------------------------
Confidence 999999999999999988744 455556666643 3467888888877622
Q ss_pred cccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCh
Q 015907 314 PQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAER-MFIQARFFAPEKV 388 (398)
Q Consensus 314 ~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~ 388 (398)
+..|.....+ .+.++..+|+|++|...++.++..++++++.+.++..+-...|...++.+ .+.+.....|+++
T Consensus 202 --k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 202 --KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred --ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 2334433333 99999999999999999999999999999999999999999998877654 4566666777764
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=1.1e-07 Score=66.00 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEK---P----SDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++..+|.+|..+|++++|+.+|++++++. + ....++.++|.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444444444321 0 1123344444444444444444444444443
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=1.3e-07 Score=65.68 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SP-K---DSTALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
|....++.++|.++...|++++|+.+|++++++ .+ + ...++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556778999999999999999999999999975 22 2 2558999999999999999999999999876
No 199
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.53 E-value=1.7e-06 Score=67.83 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD----------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD- 241 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~- 241 (398)
-|+.|.+.++.....+|.+++.++..|.++..+.+ +++|+.-|+.++.++|+..+++..+|.+|..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999999988876643 5678888889999999999999999999987653
Q ss_pred ----------HHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 242 ----------YEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 242 ----------~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
|++|..+|+++...+|+ +...+..|..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~ 122 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM 122 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 78899999999999998 6655554443
No 200
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=5.5e-05 Score=72.32 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=147.1
Q ss_pred CCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH
Q 015907 114 APIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS 192 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 192 (398)
+|++.++...-+++-+| +++|..+|.+.-..+ .+-..|...|.+++|.+.-+.--.++ --
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----------------LlNKlyQs~g~w~eA~eiAE~~DRiH--Lr 858 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----------------LLNKLYQSQGMWSEAFEIAETKDRIH--LR 858 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------HHHHHHHhcccHHHHHHHHhhcccee--hh
Confidence 34344443322344488 999999998875433 34566777888888877665432221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDL----------AKEKP----------SDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
..|++.|.-+...++.+.|+++|+++ +..+| .++..|...|..+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 47888888889999999999999875 33344 23456777788888899999999998877
Q ss_pred Hhh---------------------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC---CCCchhhhcccccc
Q 015907 253 TMV---------------------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG---KSDDLSVKDGRSGD 308 (398)
Q Consensus 253 l~~---------------------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ 308 (398)
-.. ... +..+.+.+|+.|...|+..+|+..|.++...-... .+.++...+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esg-d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L----- 1012 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESG-DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL----- 1012 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcc-cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-----
Confidence 432 122 55678999999999999999999998875422110 000110000
Q ss_pred ccccccccCCCchHHHHHHH--------------HHHhCCChHHHHHHHHH-----HH-----HhCCC-ChHHHHHHHHH
Q 015907 309 KKETEPQKVDPIQVELLLGK--------------AYSDGGRVSDAVAVYDR-----LI-----SSYPN-DFRGYLAKGII 363 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~--------------~~~~~g~~~~A~~~~~~-----al-----~~~p~-~~~~~~~la~~ 363 (398)
..-++...+.+ ....+. +|.+.|.+.+|++.-=+ ++ .++|+ ++..+...+..
T Consensus 1013 --~nlal~s~~~d-~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1013 --ANLALMSGGSD-LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred --HHHHhhcCchh-HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00011111111 111233 34444444444443111 11 23443 57888889999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 015907 364 LKENGKVGDAERMFIQA 380 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~a 380 (398)
+....+|++|..++-.+
T Consensus 1090 F~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 99999999999876444
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=6.9e-06 Score=60.47 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFEVLRGLTNA 270 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~la~~ 270 (398)
.+...|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++..+. -..++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 455668888999999999999999999999999999999999999999999999999999986541 23478899999
Q ss_pred HHHcCCchHHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~ 290 (398)
|...|+.+.|..-|+.+.++
T Consensus 125 yRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHhCchHHHHHhHHHHHHh
Confidence 99999999999999888653
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.4e-05 Score=76.28 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=112.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+....+.|..++|...|.++-.. -.+-..|...|.|++|.+..+.--.+. --..|++.+.-+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 3456667888889999888887543 245567788888888887765432222 134778888888889999
Q ss_pred HHHHHHHHHH----------HhhCCC---------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 243 EGSAAAYRVS----------TMVSKD---------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 243 ~~A~~~~~~a----------l~~~p~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
+.|+++|+++ +.-+|. .+...|...|..+...|+.+.|+.+|..+..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------- 940 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------- 940 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------------
Confidence 9999999875 222232 1344566667777777777777777766533
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
|+.+..+..-+|+.++|-.+-+ ...+-.+.+.+|+.|...|++.+|+.+|.+|-.
T Consensus 941 -------------------~fs~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 -------------------YFSMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------------------hhhheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2234444444555555544333 234556777778888777888777777766543
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.44 E-value=6.9e-05 Score=72.32 Aligned_cols=194 Identities=17% Similarity=0.096 Sum_probs=138.4
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
....+++.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34678999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG 327 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 327 (398)
+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..+ ..|...|.-+.
T Consensus 99 ~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~p------------------------k~~yyfWsV~S 152 (932)
T KOG2053|consen 99 LYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFP------------------------KRAYYFWSVIS 152 (932)
T ss_pred HHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------------------cccchHHHHHH
Confidence 99999999997 77777888888888777654443322222222 22222333244
Q ss_pred HHHHhCCChH---------HHHHHHHHHHHhC-CCC-hHHHHHHHHHHHHcCCHHHHHHHH-HHHHhhCCCC
Q 015907 328 KAYSDGGRVS---------DAVAVYDRLISSY-PND-FRGYLAKGIILKENGKVGDAERMF-IQARFFAPEK 387 (398)
Q Consensus 328 ~~~~~~g~~~---------~A~~~~~~al~~~-p~~-~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~p~~ 387 (398)
.+.......+ -|...+++.++.. +-. ..-....-.++..+|++++|.+.+ ....+..+.-
T Consensus 153 lilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~ 224 (932)
T KOG2053|consen 153 LILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSA 224 (932)
T ss_pred HHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcccc
Confidence 4444333332 3445556666544 211 111223445677889999999998 3333444433
No 204
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.3e-05 Score=68.69 Aligned_cols=162 Identities=11% Similarity=0.053 Sum_probs=131.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHc
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSD---PDVFRLLGEVKYEL 239 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~ 239 (398)
.+.+....|++.+|....++.++..|.+..++..--.++..+|+...-...+++.+.. +|+. ..+.-.++..+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455667899999999999999999999999999899999999999999999999876 5555 45566778889999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|-|++|.+.-+++++++|. +..+...++.++...+++.++.+...+-....... ..-.
T Consensus 189 g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s---------------------~mla 246 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS---------------------WMLA 246 (491)
T ss_pred ccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---------------------hHHH
Confidence 9999999999999999999 99999999999999999999999986542211100 0000
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
..-+...+.++...+.|+.|+++|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1122237888889999999999998755
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.41 E-value=9.6e-05 Score=66.11 Aligned_cols=181 Identities=19% Similarity=0.165 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHhCCCCHHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAE---LGDYTRAVSLLQDL-AKEKPSDPDVF 229 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~ 229 (398)
+....++-.+|....+|+.-+...+..-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 345667778899999999999999887666 45667788999999999 99999999999994 44566788999
Q ss_pred HHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 230 RLLGEVKYEL---------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 230 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
..+|.+|... ...++|+..|.++.+++|+ ...-.+++.++...|...+....+++....+...
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~--~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l------ 292 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD--YYSGINAATLLMLAGHDFETSEELRKIGVKLSSL------ 292 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH------
Confidence 9999988652 2478999999999999976 4444667777777776554443333332111000
Q ss_pred hhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 301 VKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++ .+.....-.+.|.. ++.+..-.|++++|..++++++.+.|....
T Consensus 293 --lg-------~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 293 --LG-------RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred --HH-------hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 00 00011111234433 788888899999999999999988776543
No 206
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.41 E-value=5e-06 Score=65.27 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE---AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~---A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
++.|.+.++.....+|. +.+.+++-|.++..+.++.. +..+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~m----------------------------------- 50 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKM----------------------------------- 50 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHH-----------------------------------
Confidence 67888899999999999 99999999988877654432 3332
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK-----------VGDAERMFIQARFFAPEK 387 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~ 387 (398)
+++|+.-|++++.++|+..++++.+|.+|..++. |++|..+|++|...+|++
T Consensus 51 -----------------iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 -----------------IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -----------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred -----------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3567777888888888888888888888876654 677888888888889987
Q ss_pred hHHHH
Q 015907 388 VKALV 392 (398)
Q Consensus 388 ~~~~~ 392 (398)
...+.
T Consensus 114 e~Y~k 118 (186)
T PF06552_consen 114 ELYRK 118 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.40 E-value=5e-05 Score=63.42 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVTLAEL--------GDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p 223 (398)
|-...+.+.++.+++..++++.|+...++-+.+.|.++. +++..|.++... .-..+|+..++..+...|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 444567888999999999999999999999999988754 677777776543 223578888899999999
Q ss_pred CCHH-----------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 224 SDPD-----------------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 224 ~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
+... --..+|..|.+.|.+..|+.-++.+++..|+. ..+++..+..+|..+|-.++|...-
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 7521 12356889999999999999999999987762 3457888999999999999988774
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.7e-06 Score=67.52 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+...|..++....|..|+.+|.+++.++|..+..|.+.+.||++..+++.+.....+++++.|+....++.+|.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 33445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhh
Q 015907 241 DYEGSAAAYRVSTMV 255 (398)
Q Consensus 241 ~~~~A~~~~~~al~~ 255 (398)
.+++|+..+.++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 666666666666443
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.38 E-value=0.00027 Score=62.15 Aligned_cols=205 Identities=16% Similarity=0.022 Sum_probs=144.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYEL 239 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 239 (398)
..|.+....|+-..|...-.+.-.+-..+ +.++..-+..-.-.|+++.|..-|+-++. +|+. .-.+..|-.--...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34566667788888888888776544444 34555556777888999999999998875 3322 11222222333468
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|..+.|+.+-+.+....|. -+.++...-...+..|+++.|+++.+.........++ ..+.
T Consensus 168 GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~-------------------~aeR 227 (531)
T COG3898 168 GAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD-------------------VAER 227 (531)
T ss_pred ccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh-------------------hHHH
Confidence 9999999999999999999 8888888888889999999999999876553221110 0001
Q ss_pred chHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 320 IQVELLLGKAYS-DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 320 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+.-+.... -.-+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..|+-.
T Consensus 228 ~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 228 SRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 112222222221 123577888888888999999888888888999999999999999999988887643
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.36 E-value=3.1e-05 Score=67.98 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE-LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
+|..+.....+.+..+.|...|.++++..+....+|...|.+-+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577778888888889999999999997777778999999999666 5677779999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
.++.+.|..+|++++..-|. .. ..|......-...|+.+....+..++.+..+..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999988665 33 478888888899999999999999998887764
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.34 E-value=1.5e-06 Score=52.49 Aligned_cols=40 Identities=30% Similarity=0.393 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.32 E-value=6.7e-05 Score=68.16 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=94.2
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C--
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS---------------------D-- 225 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------------~-- 225 (398)
.+..+.+.-++.-.++++++|+.+.+|..||.-. ..-..+|..+|+++++.... +
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 3566778888999999999999999988887632 23467788888877764310 0
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 226 --PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 226 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..+...+|.|..++|+.++|++.|+..++..|.. +..++.+|..++...+.|.++..++.+.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 2356789999999999999999999999988762 5668999999999999999999998775
No 213
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.30 E-value=2.5e-06 Score=51.53 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.++..+|.+|..+|++++|+..|+++++.+|+++.+|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 4566667777777777777777777777777776666654
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.9e-06 Score=68.47 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+..-|..+..-..|..|+..|.+++.++|..+..|.+.+.|+++.++++.+.....+++++.|+ ....++.+|.++...
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQS 91 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhh
Confidence 3445677778889999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred CCchHHHHHHHHHHHHhcCCC
Q 015907 275 KKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..|++|+..+.++.......+
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCC
Confidence 999999999999977776553
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=4.2e-05 Score=63.56 Aligned_cols=132 Identities=13% Similarity=0.069 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK------PSDPDVFRLL 232 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 232 (398)
+.+.+..++...++|.-....+.++++.+ |.++.....+|.+.++.||.+.|..+++++-+.. .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566778888899999999999999988 6678889999999999999999999999765432 2334567788
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+.++.-.+++.+|...|.+++..+|. ++.+.++.+.++...|+...|++.++.+....|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88999999999999999999999999 999999999999999999999999988865443
No 216
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00018 Score=58.81 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI----SP--KDSTALEGAAVTLAE 204 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p--~~~~~~~~la~~~~~ 204 (398)
+++|..+|.++- ..|....+|..|-..|.++-+. +. +....+...+.+|..
T Consensus 30 ~eeAadl~~~Aa-----------------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk 86 (288)
T KOG1586|consen 30 YEEAAELYERAA-----------------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK 86 (288)
T ss_pred hHHHHHHHHHHH-----------------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc
Confidence 778877777763 3334444455555555444332 11 124456666666655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHH
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYEL-KDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALL 272 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~ 272 (398)
+++++|+.++++++++..+.. ..+..+|.+|..- .++++|+.+|+++-+..... ....+...+....
T Consensus 87 -~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 -VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred -cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 599999999999999865543 2355788888764 89999999999998765431 1224556677778
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..++|.+|+..|++.....-.++- +.....+..+.-|.|+....+.-.+...+++..+++|.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L------------------LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL------------------LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH------------------HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 899999999999887553221110 11111234444788888889998899999999999998
Q ss_pred ChH
Q 015907 353 DFR 355 (398)
Q Consensus 353 ~~~ 355 (398)
...
T Consensus 228 F~d 230 (288)
T KOG1586|consen 228 FTD 230 (288)
T ss_pred ccc
Confidence 644
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00041 Score=57.17 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEK-----PSDPDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 228 (398)
.+..-+.++....++++|..++.++.+-..++ ..++...+.+...+..+.++..+++++..+. |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 44555677778889999999999998654443 3466777888888999999999999998763 444444
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
-...+--..+..++++|+.+|++++.+-... -.+.+...++++.+..++.+|-..+.+-......
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------- 182 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------- 182 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------
Confidence 4444555566788999999999998874331 2345677888999999999988887553221110
Q ss_pred cccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS----YPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
....+...... ...+|....+|..|..+|+...++ .|++.....+|-..| ..|+.++....+
T Consensus 183 -----------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 183 -----------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred -----------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 12222222223 444555667999999999987663 345566666666655 567777776655
Q ss_pred HH
Q 015907 378 IQ 379 (398)
Q Consensus 378 ~~ 379 (398)
.-
T Consensus 251 ~s 252 (308)
T KOG1585|consen 251 SS 252 (308)
T ss_pred cC
Confidence 43
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.22 E-value=0.00014 Score=66.16 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=122.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------------------
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD------------------ 258 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------ 258 (398)
.+..-..+..+++.-++..++|++++|+.+.+|..|+.-. ..-..+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3344445678899999999999999999999998887532 22356777777777654210
Q ss_pred ------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh
Q 015907 259 ------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD 332 (398)
Q Consensus 259 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 332 (398)
....+...++.+..+.|+.++|++.++..++..+. .+.-.+..++..++..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~-----------------------~~~l~IrenLie~LLe 307 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN-----------------------LDNLNIRENLIEALLE 307 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-----------------------cchhhHHHHHHHHHHh
Confidence 01235577999999999999999999888653321 1122467779999999
Q ss_pred CCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhhCCCChHHHHH
Q 015907 333 GGRVSDAVAVYDRLISS-YPNDFRGYLAKGIILKE-NGK---------------VGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 333 ~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+.|.++...+.+.-++ -|+.....+..+.+-.+ .++ -..|++.+.+|++.+|.-+.-+..
T Consensus 308 lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 308 LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 99999999999886433 35566666665554432 122 234778999999999998876543
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00018 Score=61.93 Aligned_cols=167 Identities=11% Similarity=0.058 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC--CHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDI--NFEVLRGLTNAL 271 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~la~~~ 271 (398)
...-+.+....|++.+|...++++++..|.+.-++..--.+++..|+...-...+++++.. +|+. ...+.-.++..+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3444566677899999999999999999999988888889999999999999999999977 6662 133455677888
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
...|-|++|.+.-+++ +++++.+.|.. ++.++...|++.++.++..+.-..
T Consensus 186 ~E~g~y~dAEk~A~ra---------------------------lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRA---------------------------LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred HHhccchhHHHHHHhh---------------------------ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 9999999999998888 56888888876 888889999999999998775432
Q ss_pred CCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCh
Q 015907 350 YPND----FRGYLAKGIILKENGKVGDAERMFIQAR--FFAPEKV 388 (398)
Q Consensus 350 ~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~ 388 (398)
-... ..-|..-+.++.+-+.|+.|.+.|.+-+ ++..++.
T Consensus 239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 2211 2245677888999999999999997754 3344444
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.18 E-value=2e-06 Score=48.41 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00074 Score=55.72 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINF 261 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~ 261 (398)
..+..-+.+|...++|++|...+.++.+-..++. .++-..+.+...+..+.++..+|+++..+. |+ ..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd-tA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD-TA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc-hH
Confidence 4566667889999999999999999997655442 345566777788899999999999998763 43 22
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC-chHHHHHHHHHHhCCChHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 340 (398)
..-...+.=.....++++|+++|+++..++..... ... .+.+-..+.++.+..++.+|-
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr--------------------~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDR--------------------DQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch--------------------HHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 23334444456778899999999999887654411 000 122233888999999999998
Q ss_pred HHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChHHHHHh
Q 015907 341 AVYDRLIS------SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF----APEKVKALVDQ 394 (398)
Q Consensus 341 ~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 394 (398)
..+.+-.. ..++-...+.....+|.-..+|..|...++...++ .|++..+.-+|
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL 234 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL 234 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH
Confidence 88776543 23444455666667777778999999999886553 34444444444
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.12 E-value=2.8e-06 Score=47.78 Aligned_cols=32 Identities=25% Similarity=0.558 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 181 YEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 181 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666666665554
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00048 Score=58.68 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG- 233 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la- 233 (398)
|.....-+..+......|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-...... ......+
T Consensus 131 ~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~ 209 (304)
T COG3118 131 PAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQ 209 (304)
T ss_pred ChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHH
Confidence 44445556677888899999999999999999999999999999999999999999998887643222221 1111111
Q ss_pred -HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 234 -EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 234 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
..+.......+ ...+++.+..+|+ +.++.+.++..+...|+.++|++.+-..++
T Consensus 210 i~ll~qaa~~~~-~~~l~~~~aadPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 210 IELLEQAAATPE-IQDLQRRLAADPD-DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhcCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22323222222 2345566778999 999999999999999999999999855544
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=0.00023 Score=62.53 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-+. .++.+.|...|+.+++..|. +...|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 566666777777778888888888876555566777777777555 45555588888888888877 7777877777777
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..++.+.|..+|++++..++.. .....+|......-...|+.+....+.+++.+..|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~----------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKE----------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCH----------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHHhcCch----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 8888888888887773321100 001123333455555556666666666666666665
Q ss_pred C
Q 015907 353 D 353 (398)
Q Consensus 353 ~ 353 (398)
+
T Consensus 140 ~ 140 (280)
T PF05843_consen 140 D 140 (280)
T ss_dssp S
T ss_pred h
Confidence 3
No 225
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=8.8e-06 Score=46.01 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
No 226
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=7.6e-05 Score=61.35 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLS--------ISPKDS----------TALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
.++...|.-++..|+|.+|...|..++. ..|..+ ..+.+++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4667789999999999999999998864 245543 3678899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|.+..+++..|.++...=+.++|...|.++++++|.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999997
No 227
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.05 E-value=1.4e-05 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+.+|+.+|.++..+|++++|++.|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888875
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00064 Score=61.56 Aligned_cols=118 Identities=11% Similarity=0.060 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEET-LSISPK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKE---- 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 221 (398)
.+.+.+.+..+..++..|++..|.+.+... +...|. .-.+|.++|.+++++|.|.-+..+|.++++.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999888653 222333 1235789999999999999999999999961
Q ss_pred -----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 222 -----KP---------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 222 -----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.| ...++.++.|..|...|++-.|.++|.++...... +|..|..++.+...
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-NPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 11 23568899999999999999999999999998887 89999999988753
No 229
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.00 E-value=1.3e-05 Score=72.24 Aligned_cols=108 Identities=9% Similarity=0.168 Sum_probs=99.5
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
..+...+..++++.|+..|.++++++|+.+..+-+.+..+...+++..|+.-+.++++++|....+|+..|.++...+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45666778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+|...|+....+.|+ ++.+...+-.+-
T Consensus 89 ~~A~~~l~~~~~l~Pn-d~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPN-DPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHhhhcCcC-cHHHHHHHHHHH
Confidence 9999999999999999 888776665544
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.00 E-value=0.001 Score=59.71 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYE---LKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+++...+-..|....+|+.-+.+.+.+-.+ .++.+.+...+|.++.+ .|+.++|+..+..++......+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556777888899999999999999888776 45567788899999999 99999999999996555443389999
Q ss_pred HHHHHHHHH---------cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCC
Q 015907 265 RGLTNALLA---------AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGG 334 (398)
Q Consensus 265 ~~la~~~~~---------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g 334 (398)
..+|.+|-. ....++|+.+|.++.+ .+|+ ..-.+++.++...|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---------------------------~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---------------------------IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---------------------------CCccccchHHHHHHHHHcC
Confidence 999999943 2246789999988844 3332 23345666666666
Q ss_pred ChHHHHHHHHHHH--------H----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 335 RVSDAVAVYDRLI--------S----SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 335 ~~~~A~~~~~~al--------~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
...+.....++.. + ..-.+...+-.++.+..-.|++++|+.++++++.+.|...
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5433332222221 1 1223455666788888999999999999999999987643
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0024 Score=54.60 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+.-...+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....+...........++
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666778889999999999999999999999999999999999999999998887643322220111111112333
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+.....+....-.+ ...+|.+ ..+.+|..+...|+.++|++.+-..+..
T Consensus 214 ~qaa~~~~~~~l~~~----------------------------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 214 EQAAATPEIQDLQRR----------------------------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHhcCCCHHHHHHH----------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333333333222 2345554 4455999999999999999998888876
Q ss_pred CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 350 YPN--DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 350 ~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+-. +..+...+-.++...|.-+.+...+++
T Consensus 266 d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 266 DRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 543 455666666666666654444444443
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.88 E-value=0.00058 Score=53.64 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=74.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV-SLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
.|......++.+.++..+++++.+...+...-.. ...|-... ..++.. ...+...++..+...|++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCH
Confidence 3445556677777777787777765332110000 01111111 112221 134666778888889999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++|+..+++++..+|. +..++..+..+|...|+..+|+..|+++...+..
T Consensus 79 ~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 79 EEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 8889999999999999999999999888776543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.87 E-value=0.00026 Score=66.72 Aligned_cols=122 Identities=15% Similarity=-0.003 Sum_probs=101.9
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 246 (398)
..+.+.|...+.......|+....++..|+++...|+.++|++.|++++.....- .-.++.++.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988533222 236788999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc-------hHHHHHHHHHHHHhc
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKP-------DEAVQFLLASRERLS 292 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~ 292 (398)
.+|.+..+.+.-......+..|.++...++. ++|..+|.++.....
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999976542344557788999999999 888888877765443
No 234
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.87 E-value=4.7e-05 Score=42.92 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444443
No 235
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.87 E-value=3.3e-05 Score=43.59 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
|+.+|.+|..+|++++|+..|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33333333333333333333333333333
No 236
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00035 Score=63.19 Aligned_cols=219 Identities=12% Similarity=0.039 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKE------KP-- 223 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p-- 223 (398)
....+++.|.+++...++..|++.....+..-... ..+-...-..+....+-++|+.++.-.-++ .+
T Consensus 99 ~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~g 178 (696)
T KOG2471|consen 99 GTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVG 178 (696)
T ss_pred chHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 34567888999998888988888776655432111 112233334555566667777665433221 00
Q ss_pred CC-------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 224 SD-------------------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 224 ~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
++ ..+.......+..+.+..-+..-.+.+..+..+ .+.+....+..++..|++.
T Consensus 179 n~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 179 NHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred cccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchH
Confidence 00 012222334455666677777777777777766 7888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHH-h----
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLIS-S---- 349 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~-~---- 349 (398)
.|.+.+...-- ...+. ..+.|. ..|.++|.++.+.|.|.-+..+|.+++. .
T Consensus 258 kA~KlL~~sni--~~~~g------------------~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 258 KAMKLLLVSNI--HKEAG------------------GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred HHHHHHHhccc--ccccC------------------ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 99998744210 00000 111221 2445699999999999999999999995 1
Q ss_pred ----CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 350 ----YP---------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 350 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
.| ...++.++.|..|...|+.-.|.+.|.++....-.+|..|..+..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 11 235789999999999999999999999999999999999998753
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.86 E-value=0.00086 Score=52.67 Aligned_cols=62 Identities=31% Similarity=0.336 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++..++..+...|++++|+..+++++..+|.+..+|..+..+|...|+...|+..|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999998754
No 238
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.84 E-value=0.013 Score=51.94 Aligned_cols=185 Identities=17% Similarity=0.138 Sum_probs=135.6
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cc
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL----GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LK 240 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 240 (398)
...+++..|...+..+-.. .++.....++.+|..- .+..+|..+|+.+. ....+.+.+.||.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776652 2346777778777654 46888999999554 44567888899999987 45
Q ss_pred CHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHHcC-------CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 241 DYEGSAAAYRVSTMVSKDIN-FEVLRGLTNALLAAK-------KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
+..+|..+|+++....-. . ..+.+.++..|..-. +...|+.+|.++..
T Consensus 128 d~~~A~~~~~~Aa~~g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~----------------------- 183 (292)
T COG0790 128 DLVKALKYYEKAAKLGNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE----------------------- 183 (292)
T ss_pred CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-----------------------
Confidence 899999999999987633 2 233788888886642 22368888877744
Q ss_pred ccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------CHHHH
Q 015907 313 EPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG---------------KVGDA 373 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A 373 (398)
....+....+|.+|.. ..++.+|..+|.++-+... ....+.++ ++...| +...|
T Consensus 184 ----~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a 256 (292)
T COG0790 184 ----LGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQA 256 (292)
T ss_pred ----hcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHH
Confidence 3345677778988855 3488999999999998666 88888899 777666 77888
Q ss_pred HHHHHHHHhhCCCCh
Q 015907 374 ERMFIQARFFAPEKV 388 (398)
Q Consensus 374 ~~~~~~al~~~p~~~ 388 (398)
..++..+....+...
T Consensus 257 ~~~~~~~~~~~~~~~ 271 (292)
T COG0790 257 LEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHHHcCChhH
Confidence 888888877665543
No 239
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.82 E-value=0.0046 Score=57.00 Aligned_cols=185 Identities=13% Similarity=0.049 Sum_probs=134.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc-
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGD--------------YTRAVSLLQDLAKEKP-SDPDVFRLLGEVKYELK- 240 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g- 240 (398)
-.-.|++++..-+..+++|+..+..+...++ -+++..+|++++...- .+...++.++..-...-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3456788888888889999888877777766 6788888888877432 23334444443333322
Q ss_pred --CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 241 --DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 241 --~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
.++..-..+++++.+......-+|..+-..-.+..-...|...|.++.+ ....
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~-------------------------~~r~ 398 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE-------------------------DKRT 398 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh-------------------------ccCC
Confidence 3667777888887764431223566677777777778889999988866 2334
Q ss_pred CchHHHHHHH-HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC
Q 015907 319 PIQVELLLGK-AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF--APE 386 (398)
Q Consensus 319 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 386 (398)
+.+++..-|. -|...++.+-|..+|+-.+...++.+..-......+...++-..|..+|++++.. .|+
T Consensus 399 ~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 399 RHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred cchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 4455554332 3567899999999999999999999999999999999999999999999999986 444
No 240
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0039 Score=61.56 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=107.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.|.+....+-|++|...|.+- .-+..+.. .+.-..+..+.|.++.++. +.+.+|..+|.+....|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 456666777778887777653 11222221 1223345566666665554 34667777777777777777
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC-CCchhhhccccccccccccccCCCchH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK-SDDLSVKDGRSGDKKETEPQKVDPIQV 322 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (398)
+|++.|-++ + ++..+.....+..+.|.|++-+.++..+++...+.. +..+..+........-.+..-..|+.+
T Consensus 1122 dAieSyika-----d-Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----D-DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred HHHHHHHhc-----C-CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence 777777654 2 566666777777777777777777766666544331 111111111111100000011234444
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 323 ELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 323 ~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
... .|.-+...|.|+.|.-+|... .-|..|+..+..+|+|+.|...-++|
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 443 677777777777777666542 34566777777777777777666554
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00027 Score=58.20 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.+.+++.|+...|+|-++++.....+..+|++..+++..|.++...=+..+|...|.++++++|.-..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 45669999999999999999999999999999999999999999999999999999999999997544
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.75 E-value=0.0046 Score=58.43 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHH------HHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-STA------LEGAAVTLA 203 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~------~~~la~~~~ 203 (398)
..-..-.|..++.+- |... ..+-...--.|+-+.++..+.++.+...-. +.+ |+.....+.
T Consensus 173 v~~G~G~f~L~lSlL---------Pp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~ 240 (468)
T PF10300_consen 173 VYFGFGLFNLVLSLL---------PPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFL 240 (468)
T ss_pred HHHHHHHHHHHHHhC---------CHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHc
Confidence 555555677777666 5443 222333334589999999999987732111 111 111111111
Q ss_pred ----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCC
Q 015907 204 ----ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD---INFEVLRGLTNALLAAKK 276 (398)
Q Consensus 204 ----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~la~~~~~~~~ 276 (398)
...+.+.|.+++....+..|+..-.++..|.++...|+.++|++.|++++..... ...-.++.++.++..+.+
T Consensus 241 ~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 241 GIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 2456788999999999999999999999999999999999999999998854322 123467889999999999
Q ss_pred chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh-------HHHHHHHHHHHHh
Q 015907 277 PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV-------SDAVAVYDRLISS 349 (398)
Q Consensus 277 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 349 (398)
|++|..++.+..+.. .-.+....+..|.++...|+. ++|..++.++-..
T Consensus 321 w~~A~~~f~~L~~~s------------------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 321 WEEAAEYFLRLLKES------------------------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHhcc------------------------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999998875411 111222333489999999999 8888888887653
No 243
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.73 E-value=0.004 Score=55.85 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=117.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGD------------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.-|++.+..+|.+..+|..+....-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888876544432 456778899999999999999888888888888999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLA---AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--- 320 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 320 (398)
+-+++++..+|. ++..|..+-..... .-.++.....|.+++..+......... ....+.
T Consensus 86 ~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~--------------~~~~~~~~e 150 (321)
T PF08424_consen 86 KKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT--------------SHPDLPELE 150 (321)
T ss_pred HHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc--------------cccchhhHH
Confidence 999999999999 88888766555543 335778888898888766544221100 000011
Q ss_pred ----hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 321 ----QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 321 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
.+...+.....+.|..+.|+..++-.++++
T Consensus 151 ~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 223337777888999999999999999865
No 244
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00034 Score=60.26 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.+..+-.-|.-|+...+|..|+.+|.+.|+..-.+ ...|.+.|.+....|+|..|+.-..+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45567778999999999999999999999876544 34788999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+.|+..+..+.+|....+..+.++-+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999888776543
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.0094 Score=47.78 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=94.8
Q ss_pred HHHHHHhc---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 015907 165 ELSEEEKN---VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD---VFRLLGEVKYE 238 (398)
Q Consensus 165 a~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~ 238 (398)
|+-|.+.. ...+|-..|+++++.- ..+.. +.....++...-+|.+.. +-..++..+..
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve 101 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 44444443 3446666777666532 12222 445555566665655533 34567888889
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDIN--FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
.+++++|+..++.++....+.+ .-+-..|+.+...+|++++|+..+...
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~----------------------------- 152 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI----------------------------- 152 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-----------------------------
Confidence 9999999999998886544422 224578899999999999999887443
Q ss_pred CCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 015907 317 VDPI---QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 317 ~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 353 (398)
.++. ......|.++...|+-++|...|.++++..+..
T Consensus 153 ~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 153 KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1121 122338899999999999999999998876443
No 246
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.02 Score=52.24 Aligned_cols=195 Identities=13% Similarity=0.131 Sum_probs=138.3
Q ss_pred HhccHHHHHHHHHHHHhcCC---C---C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 015907 170 EKNVLQTRLKKYEETLSISP---K---D--------STALEGAAVTLAELGDYTRAVSLLQDLAKE---KPS-------D 225 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p---~---~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 225 (398)
..|-+++|.++-++++.... . . ...+..+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 56778888888887775421 1 1 124566777888899999999998887764 444 3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE--VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
+..+..+|......+.++.|...|..+.+.....+.. ...+++..|.+.++.+.-.+.++. +.+.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~n--------- 434 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLN--------- 434 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCC---------
Confidence 4567788888888999999999999999876543443 346789999998876554444322 22211
Q ss_pred cccccccccccccCCC-------chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCH
Q 015907 304 GRSGDKKETEPQKVDP-------IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKV 370 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~ 370 (398)
..+ ..+.+..|...+.++++.||...+.+.++.... ..-.+..|+.+....|+.
T Consensus 435 -------------t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 435 -------------TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 111 124444777888999999999999999986521 133567889999999999
Q ss_pred HHHHHHHHHHHhhCCCChH
Q 015907 371 GDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 371 ~~A~~~~~~al~~~p~~~~ 389 (398)
.++.+...-++.+....++
T Consensus 502 ~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 502 VESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHhccchHHHHHhcCCC
Confidence 9999998888876544433
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.66 E-value=0.034 Score=48.82 Aligned_cols=223 Identities=18% Similarity=0.084 Sum_probs=135.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCC----hHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhc----CCC---C----
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPT----EEAGVVNKELSEEEKN-VLQTRLKKYEETLSI----SPK---D---- 191 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~----~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~----~p~---~---- 191 (398)
.| .+.|..++.++-.... ...|. -...+++.|......+ +++.|..+++++.+. .+. .
T Consensus 6 ~~~~~~A~~~~~K~~~~~~-----~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~ 80 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLN-----SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS 80 (278)
T ss_pred hCCHHHHHHHHHHhhhHHh-----cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence 56 7788888887754431 11133 2357788999999999 999999999999887 211 1
Q ss_pred ---HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCCHHH
Q 015907 192 ---STALEGAAVTLAELGDYT---RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK--DINFEV 263 (398)
Q Consensus 192 ---~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~ 263 (398)
..++..++.+|...+.++ +|...++.+-...|+.+..+...-.++...++.+++.+.+.+++..-+ +.+.+.
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 236788999999888765 455555566666788787776656666668999999999999988654 212222
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH---HHHHHHhCC--C---
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL---LGKAYSDGG--R--- 335 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---la~~~~~~g--~--- 335 (398)
......-+. ......|...+...+... ....++. +.. +-.++...+ +
T Consensus 161 ~l~~i~~l~-~~~~~~a~~~ld~~l~~r-----------------------~~~~~~~-~~e~~vl~~~~~~~~~~~~~~ 215 (278)
T PF08631_consen 161 ILHHIKQLA-EKSPELAAFCLDYLLLNR-----------------------FKSSEDQ-WLEKLVLTRVLLTTQSKDLSS 215 (278)
T ss_pred HHHHHHHHH-hhCcHHHHHHHHHHHHHH-----------------------hCCChhH-HHHHHHHHHHHHHcCCccccc
Confidence 222222222 234456777765554411 1112221 222 222222222 2
Q ss_pred ---hHHHHHHHHHHHHh--CCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 336 ---VSDAVAVYDRLISS--YPNDF-------RGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 336 ---~~~A~~~~~~al~~--~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
.+....++...... .|-.. ..+.+.|.-.++.++|++|+.+|+-++
T Consensus 216 ~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 216 SEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222333322211 22222 356678889999999999999999776
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.63 E-value=0.018 Score=55.86 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK-----NVLQTRLKKYEETLSI-----SPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~ 200 (398)
...+..+++.+... .+..+...+|.++..- .+.+.|+.+|+.+... .-..+.+.+.+|.
T Consensus 228 ~~~a~~~~~~~a~~-----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhh-----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHH
Confidence 35677788777644 3556677788877654 6899999999998771 1125568889999
Q ss_pred HHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 201 TLAELG-----DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK---DYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 201 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+|.... ++..|+.+|.++.+.. ++.+.+.+|.++.... ++..|.++|..|.... +..+.+.++.+|.
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYE 371 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHH
Confidence 998853 7788999999998875 4668888999888755 5789999999998765 7889999999886
Q ss_pred H----cCCchHHHHHHHHHHHHh
Q 015907 273 A----AKKPDEAVQFLLASRERL 291 (398)
Q Consensus 273 ~----~~~~~~A~~~~~~a~~~~ 291 (398)
. ..+...|..++.++....
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc
Confidence 4 357789999998886543
No 249
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.63 E-value=0.00012 Score=41.26 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46788888888888888888888888888875
No 250
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.62 E-value=9.1e-05 Score=66.96 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR 210 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 210 (398)
++.|+.+|.+++.++ |+++..+-+.+..+...+++..|+..+.++++.+|....+|+..|.+.+..+.+.+
T Consensus 20 fd~avdlysKaI~ld---------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELD---------PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HHHHHHHHHHHHhcC---------CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 788999999999999 99998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
|...|++...+.|+++.+...+..|-..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 9999999999999999988877766543
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.60 E-value=0.058 Score=50.77 Aligned_cols=195 Identities=11% Similarity=-0.051 Sum_probs=151.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVF 229 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~ 229 (398)
....+.....|......-...|+++...-.|++++--.....+.|...+.-....|+.+-|-..+..+.++ .|+.+.+.
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 33335556677777788888999999999999999887788899999999999999999999999888886 46677788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
..-+......|+++.|...+++.....|. ...+-...+.+..+.|+.+.+.. +.......-..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~--------------- 432 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDANY-KNELYSSIYEG--------------- 432 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccc---------------
Confidence 88888888899999999999999998888 78887888888888999888884 22222211111
Q ss_pred cccccccCCCc---hHHHHHHH-HHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 310 KETEPQKVDPI---QVELLLGK-AYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 310 ~~~~~~~~~~~---~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
..++. ......+. .+.-.++.+.|...+.++++..|.+...+..+..+....+
T Consensus 433 ------~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 ------KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ------ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 11121 12222333 3455688999999999999999999988888888877665
No 252
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.59 E-value=0.012 Score=57.06 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=130.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc--
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-----GDYTRAVSLLQDLAKE-----KPSDPDVFRLLGEVKYELK-- 240 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g-- 240 (398)
+...|..+++.+-.. .+..+...+|.+|..- .|.+.|+.+++.+.+. .-..+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 456788888887665 4677888888888754 6899999999999771 1124567888999998843
Q ss_pred ---CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 241 ---DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK---KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 241 ---~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+...|..+|.++-... ++++.+.+|.++.... ++..|..+|..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~------------------------- 356 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK------------------------- 356 (552)
T ss_pred ccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-------------------------
Confidence 6788999999998876 5678889999997655 56899999988843
Q ss_pred ccCCCchHHHHHHHHHHhC----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 015907 315 QKVDPIQVELLLGKAYSDG----GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARF 382 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 382 (398)
.....+.++++.+|..- -+...|..+|.++.+.. .+.+.+.++.++.-- +.+..+...+....+
T Consensus 357 --~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 357 --AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred --cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 44457778888888653 47899999999999876 455555566555433 666666555544433
No 253
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0092 Score=50.02 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=100.3
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE-GSAAAY 249 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~ 249 (398)
..-.+|+.....++.++|.+-.+|...-.++..+ .+..+-++++...++.+|++-.+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 4456778888999999999999988877777655 46778889999999999999999999988888899888 788899
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+.++..+.. +..+|...-.+...-+.++.-+.+..+.++
T Consensus 137 ~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 137 KLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999998888 899999999999998999998888877665
No 254
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.54 E-value=8.4e-05 Score=64.20 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=87.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
.+.-.+..|.++.|++.|-.++.++|.....+...+.++..++.+..|+.-+..+++++|+...-+-..+.....+|+++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 34455677899999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q 015907 244 GSAAAYRVSTMVSKD 258 (398)
Q Consensus 244 ~A~~~~~~al~~~p~ 258 (398)
+|...+..+.+++-+
T Consensus 200 ~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 200 EAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999998754
No 255
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.043 Score=46.18 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEK-NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT-RAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l 232 (398)
|.+..+|...-.++... .+..+-++++.++++.+|.+-.+|...-.+....|++. .-+++.+.++..+.++-.+|...
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 65555555555444443 34556667777777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
-.+...-+.++.-+.+..+.++.+-- +-.+|..
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~ 186 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQ 186 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhhe
Confidence 77777777777777777777766554 4445443
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.34 E-value=0.065 Score=48.89 Aligned_cols=114 Identities=16% Similarity=0.047 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
....|..++.+....|.++.|...+.++....... ......+.+..+..+...|+..+|
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~---------------------~~~~~~v~~e~akllw~~g~~~~A 203 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS---------------------ESLLPRVFLEYAKLLWAQGEQEEA 203 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc---------------------cCCCcchHHHHHHHHHHcCCHHHH
Confidence 56788889999999999999999987764422111 111345666688888999999999
Q ss_pred HHHHHHHHHhC-C-C--------------------------------ChHHHHHHHHHHHHc------CCHHHHHHHHHH
Q 015907 340 VAVYDRLISSY-P-N--------------------------------DFRGYLAKGIILKEN------GKVGDAERMFIQ 379 (398)
Q Consensus 340 ~~~~~~al~~~-p-~--------------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~ 379 (398)
+..++..+... . . ...++..+|...... +..++++..|.+
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 99888877610 0 0 024666777777777 888899999999
Q ss_pred HHhhCCCChHHHHHh
Q 015907 380 ARFFAPEKVKALVDQ 394 (398)
Q Consensus 380 al~~~p~~~~~~~~l 394 (398)
+..++|+...+|...
T Consensus 284 a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHhChhHHHHHHHH
Confidence 999999988887753
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.018 Score=46.20 Aligned_cols=113 Identities=16% Similarity=0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHH
Q 015907 176 TRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
+.....++....+|.+. .+...+|..+...|++++|+..++.++....+. .-+-.+|+.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555555442 345667788888888888888888887543322 235567888888888888888887
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
...-..+ .........|.++...|+-++|...|.+++..
T Consensus 150 ~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 150 DTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 6543221 12334556788888888888888888888664
No 258
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.32 E-value=0.13 Score=50.73 Aligned_cols=204 Identities=13% Similarity=0.006 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK--D-------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-- 225 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 225 (398)
++......++......++.+|..+..++...-|. . ....-..|.+....|++++|+++.+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4455666788888899999999988887665433 1 2344556788889999999999999999987754
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHH--HHHHHHHHHHHcCC--chHHHHHHHHHHHHhcCCC
Q 015907 226 ---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFE--VLRGLTNALLAAKK--PDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 226 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~--~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~ 295 (398)
..++..+|.+..-.|++++|..+...+.+..... ... +....+.++..+|+ +.+....+.......
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~---- 569 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH---- 569 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----
Confidence 3467788999999999999999999988874321 222 33455777788883 333333333322211
Q ss_pred CCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCC--hH-HHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISS----YPND--FR-GYLAKGIILKE 366 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~ 366 (398)
....|.. .....+.++...-+++.+.......++. .|.. .. .++.++.++..
T Consensus 570 -------------------l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 570 -------------------LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred -------------------hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 0111111 1111222222222255555444444432 2222 22 23478888888
Q ss_pred cCCHHHHHHHHHHHHhh
Q 015907 367 NGKVGDAERMFIQARFF 383 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~~ 383 (398)
.|+.++|...+.....+
T Consensus 631 ~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 631 RGDLDKALAQLDELERL 647 (894)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888776654
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.017 Score=50.18 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD----PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
-+..-|+-|+..++|..|...|.+.|+..-.+ ...|.+.+-+....|+|..|+....+++.++|. +..+++.=+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhH
Confidence 45556888999999999999999999975443 457889999999999999999999999999999 9999999999
Q ss_pred HHHHcCCchHHHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~ 289 (398)
+++.+.++.+|..+.+..+.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999877644
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.31 E-value=0.00025 Score=40.52 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
++.+||.+|..+|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888875544
No 261
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.28 E-value=0.0006 Score=38.26 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
|+.+|.+|..+|++++|+.+|+++++++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3333444444444444444444443333
No 262
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.28 E-value=0.00025 Score=61.36 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=81.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
-.+..|.++.|++.|..+++++|.....+...+.++..++....|+..+..++.++|+ ...-+-..+.+...+|++++|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 3455688999999999999999999999999999999999999999999999999999 888888899999999999999
Q ss_pred HHHHHHHHH
Q 015907 281 VQFLLASRE 289 (398)
Q Consensus 281 ~~~~~~a~~ 289 (398)
...+..+.+
T Consensus 202 a~dl~~a~k 210 (377)
T KOG1308|consen 202 AHDLALACK 210 (377)
T ss_pred HHHHHHHHh
Confidence 999988866
No 263
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.05 Score=54.23 Aligned_cols=204 Identities=12% Similarity=0.077 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+.+..|..+|.+..+.|...+|++.|-++ +++..+.....+..+.|.|++-+.++.-+-+.... +.+-..|..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45678899999999999999999888765 67778888888888889999888888766553211 1122223333
Q ss_pred HHHcc----------------------------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 236 KYELK----------------------------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 236 ~~~~g----------------------------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
|.+.+ .|+.|.-+|. +..-|..|+..+...|+|..|.+.-+++
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333 3333333332 2334556666777777777777666554
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
-..-. ....-...-.-.+-.+.+....+- .+-.-.+...|...|-+++-+..++.++-+.......+..||.+|
T Consensus 1247 ns~kt---WK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1247 NSTKT---WKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred cchhH---HHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 11000 000000000000000000001100 111222566677777777777777777766665556666666666
Q ss_pred HHcCCHHHHHHHHH
Q 015907 365 KENGKVGDAERMFI 378 (398)
Q Consensus 365 ~~~g~~~~A~~~~~ 378 (398)
.+- ++++-.++++
T Consensus 1324 sky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLK 1336 (1666)
T ss_pred Hhc-CHHHHHHHHH
Confidence 543 3444444443
No 264
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.017 Score=51.86 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 213 SLLQDLAKEKPSDPDVFRLLGEVKYELKD------------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 213 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
.-+.+.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|+ +...+..+-.......+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 45778889999999999998866554422 45667899999999998 999998888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC-----ChHHHHHHHHHHHHhCC----
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG-----RVSDAVAVYDRLISSYP---- 351 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p---- 351 (398)
..-+++++. .+|....+|.+.+-..++ .++.....|.+++..-.
T Consensus 85 ~~~we~~l~---------------------------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 85 AKKWEELLF---------------------------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHH---------------------------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 888877744 566667777555554444 46788888888775210
Q ss_pred C--------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 352 N--------------DFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 352 ~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
. -..++..+...+.+.|-.+.|+..++-.++++
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0 13466778888899999999999999999875
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.24 E-value=0.00065 Score=37.75 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777788877888888888888887777763
No 266
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.21 E-value=0.19 Score=46.85 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=82.6
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCC--------------chHHHHHHHHHHHHhcCCCCCchhhhcccccc-------
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKK--------------PDEAVQFLLASRERLSTGKSDDLSVKDGRSGD------- 308 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 308 (398)
++++..-+- .++.|+..+..+...++ -+++..+|++++...... ...++..+...++
T Consensus 269 eQ~ll~l~~-~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 269 EQCLLYLGY-HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccch
Confidence 333333334 56777776666655555 578888888877644322 1011111111110
Q ss_pred --------ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 015907 309 --------KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII-LKENGKVGDAERMFIQ 379 (398)
Q Consensus 309 --------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 379 (398)
..+......+|+-++..+-..-.+..-...|..+|.++-+..-....++..-|.+ |...++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 1122233455666666666666666678888999998876433333444444443 4677999999999999
Q ss_pred HHhhCCCChHH
Q 015907 380 ARFFAPEKVKA 390 (398)
Q Consensus 380 al~~~p~~~~~ 390 (398)
.+...++.+.-
T Consensus 427 GLkkf~d~p~y 437 (656)
T KOG1914|consen 427 GLKKFGDSPEY 437 (656)
T ss_pred HHHhcCCChHH
Confidence 99998887653
No 267
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.11 Score=47.77 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=141.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCC-CCCC----hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CCC-------CH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGS-VSPT----EEAGVVNKELSEEEKNVLQTRLKKYEETLSI---SPK-------DS 192 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~-------~~ 192 (398)
.| +++|.++-++++...+.++... ..|- ....+-.+..|-.-.|++.+|++....+.+. .|. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 35 6666666666665543333321 1111 0122334556667789999999888877664 344 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--C-------
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-D--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--N------- 260 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~------- 260 (398)
...+.+|......+.++.|...|..+.+.-.. + .-+..++|.+|...|+-+.--+.++. +.|.. .
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHH
Confidence 45677777777788999999999999886433 2 23456789999998776554444443 34430 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHH
Q 015907 261 FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSD 338 (398)
Q Consensus 261 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~ 338 (398)
..+++..|...+.++++.||...+.+.++..... ..+. .-....++.+....|+..+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae---------------------d~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE---------------------DLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh---------------------hHHHHHHHHHHHHHHHHHHhcchHH
Confidence 2356777888889999999999998887643110 0110 1233348999999999999
Q ss_pred HHHHHHHHHHhC---CCChH---HHHHHHHHHHHcCC--HHHHHHHH
Q 015907 339 AVAVYDRLISSY---PNDFR---GYLAKGIILKENGK--VGDAERMF 377 (398)
Q Consensus 339 A~~~~~~al~~~---p~~~~---~~~~la~~~~~~g~--~~~A~~~~ 377 (398)
+....+-++.+. |+.+. ....+-.+|...|+ .++..+.|
T Consensus 504 s~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 504 SRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 999988888764 33332 22345556777777 44444443
No 268
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.18 E-value=0.0017 Score=60.27 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 241 (398)
..|......|+...|+.++..++-..|.... ...++|.++...|....|-.++.+++.+....+-.++.+|..+..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3455666789999999999999998887644 578899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.+.|++.|++++.++|+ ++..-..|-.+.+
T Consensus 692 i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 99999999999999999 8877665554444
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.12 E-value=0.16 Score=46.38 Aligned_cols=164 Identities=13% Similarity=0.049 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHH-HhcCCCCCch
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRE-RLSTGKSDDL 299 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~ 299 (398)
.....|..++.+....|+++.|...+.++...++.. .+.+....+.++...|+..+|+..++..+. ..........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 446678888899999999999999988888765321 356777888888899999999988877766 2222211000
Q ss_pred hhhc--cc---cccc---cccccccCCCchHHHHHHHHHHhC------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 300 SVKD--GR---SGDK---KETEPQKVDPIQVELLLGKAYSDG------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 300 ~~~~--~~---~~~~---~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
.... +. .... .........-..++..+|...... +..++++..|.++++.+|....+|+.+|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 00 0000 000000000013444577777777 88999999999999999999999999998886
Q ss_pred HcCCH-----------------HHHHHHHHHHHhhCCCC
Q 015907 366 ENGKV-----------------GDAERMFIQARFFAPEK 387 (398)
Q Consensus 366 ~~g~~-----------------~~A~~~~~~al~~~p~~ 387 (398)
..-+. ..|+..|-+++...|..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 55221 34888899999998873
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.06 E-value=0.012 Score=45.91 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+......-...++.+++...+....-+.|..++.-..-|.+++..|+|.+|+.+++.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555566666778889999999888888999999999999999999999999999999888888888888888899888
Q ss_pred ccCHHHHHHHHHHHHhhCC
Q 015907 239 LKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p 257 (398)
+|+.+ =..+-..+++..+
T Consensus 91 ~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPS-WRRYADEVLESGA 108 (160)
T ss_pred cCChH-HHHHHHHHHhcCC
Confidence 87753 1222333444444
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.05 E-value=0.074 Score=48.41 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=102.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CCH---HHHHHHH
Q 015907 183 ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--------------KP------------SDP---DVFRLLG 233 (398)
Q Consensus 183 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la 233 (398)
..+..+|-+.+++..++.++..+|+...|.+++++++-. ++ .|- .+.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345678999999999999999999999999999998632 11 111 2455667
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFE-VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
..+.+.|-+..|.++.+-.+.++|..++- +++.+-....+.++++--+..++.........
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~------------------ 172 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN------------------ 172 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh------------------
Confidence 78888999999999999999999985554 44555555578888887777776543310000
Q ss_pred ccccCCCchHHHHHHHHHHhCCCh---------------HHHHHHHHHHHHhCC
Q 015907 313 EPQKVDPIQVELLLGKAYSDGGRV---------------SDAVAVYDRLISSYP 351 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p 351 (398)
....-| ...+..+.++...++- +.|...+.+|+...|
T Consensus 173 -~~~~lP-n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 173 -WLSLLP-NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -hhhhCc-cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 011223 3334456666666666 888888888876544
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.05 E-value=0.0023 Score=54.75 Aligned_cols=70 Identities=14% Similarity=0.328 Sum_probs=65.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+.-....|+.++|...|+.++.+.|++++++..+|.+.....+.-+|-.+|-+|+.+.|.+.+++.++-
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4555677899999999999999999999999999999999999999999999999999999999998864
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.05 E-value=0.33 Score=48.14 Aligned_cols=224 Identities=15% Similarity=0.018 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCC---CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVS---PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAAVTL 202 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~ 202 (398)
+++|..++.++...- +..... ......--..|.+....|+++.|+...+.++..-|.+ ..++..+|.+.
T Consensus 431 ~~ea~~li~~l~~~l---~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~ 507 (894)
T COG2909 431 LAEAETLIARLEHFL---KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAA 507 (894)
T ss_pred hHHHHHHHHHHHHHh---CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHH
Confidence 777777777665433 221111 1122333456778888999999999999999987765 34778889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC----CH--HHHHHHHHHHHHccCHH--HHHHHHHHHHh----hCCCCCHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPS----DP--DVFRLLGEVKYELKDYE--GSAAAYRVSTM----VSKDINFEVLRGLTNA 270 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~la~~~~~~g~~~--~A~~~~~~al~----~~p~~~~~~~~~la~~ 270 (398)
.-.|++++|..+..++.+.... .. .+....+.++..+|+.. +....|...-. ..|. ........+.+
T Consensus 508 ~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~-~~f~~~~r~~l 586 (894)
T COG2909 508 HIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR-HEFLVRIRAQL 586 (894)
T ss_pred HHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc-chhHHHHHHHH
Confidence 9999999999999998886322 22 23445577888888433 33333333222 2233 22233333444
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH---HHHHHHHHhCCChHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE---LLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+...-+++.+.............. ...|...+ ..++.++...|++++|...+.+..
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~---------------------~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVY---------------------TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhc---------------------ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 433333666655554444433222 22333322 358999999999999999998877
Q ss_pred HhCCCC-----hHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 015907 348 SSYPND-----FRG--YLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 348 ~~~p~~-----~~~--~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.+-... ..+ +.-.......+|+..+|.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 643222 111 22222333567888888887766
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.04 E-value=0.0015 Score=36.17 Aligned_cols=30 Identities=3% Similarity=0.032 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555443
No 275
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.02 E-value=0.069 Score=48.50 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-- 255 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 255 (398)
.-.+++++...|-.+++|+.....+...++-+.|+....+.+...|. ....++.+|....+.+....+|+++++.
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 34567888888888999999999999999999999999888877765 6667888888877877777777766532
Q ss_pred ----------------CCCCCHH-----------HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 256 ----------------SKDINFE-----------VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 256 ----------------~p~~~~~-----------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
+|...++ +|+.+.....+..-.+.|...|-++.+.
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~------------------ 426 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE------------------ 426 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc------------------
Confidence 1110111 2333334444555567777788776542
Q ss_pred ccccccccCCCchHHHHHH-HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 309 KKETEPQKVDPIQVELLLG-KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.....+++..-| .-|...|++.-|..+|+-.+...|+++......-..+...++-..|..+|++++.
T Consensus 427 -------~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 427 -------GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred -------CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 222233333322 2345667777788888777777777766666666666777777777777776654
No 276
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.01 E-value=0.022 Score=54.70 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~ 277 (398)
.|.-+.+.|+++.|+..|-.+- ....-.......+++.+|+..++..-.... ....|-.++.-|...|+|
T Consensus 712 wg~hl~~~~q~daainhfiea~--------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445555566666666554431 111112222333445555555443322221 123344566667777777
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRG 356 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 356 (398)
+.|.++|.++ +...--...|.+.|+|++|...-.+.. .|.. ...
T Consensus 782 e~ae~lf~e~---------------------------------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 782 EIAEELFTEA---------------------------------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred HHHHHHHHhc---------------------------------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 7777777443 111113455666677777766655543 2322 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 015907 357 YLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~ 377 (398)
|...+.-+-+.|++.+|.++|
T Consensus 827 yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhHHhHHhhcchhhhhhee
Confidence 555566666666666665544
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.96 E-value=0.0021 Score=36.63 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLA 219 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al 219 (398)
|..||.+|...|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.94 E-value=0.014 Score=41.29 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccC
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD--PDVFRLLGEVKYELKD 241 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 241 (398)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455666677777777777777777777777777777777777766543 3444444444444444
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.88 E-value=0.004 Score=38.76 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
++.+|..+.++|+|++|..+.+.++++.|++.++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444555555555555555555555555554443
No 280
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.87 E-value=0.0073 Score=37.60 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
.++.+|..++++|+|++|..+.+.+++..|++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45566666666666666666666666666666555433
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.87 E-value=0.29 Score=43.31 Aligned_cols=143 Identities=15% Similarity=0.053 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE-- 204 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-- 204 (398)
+..+...+..+.... ++.....++.++.. ..+..+|..+|..+.. ...+.+.+.+|.+|..
T Consensus 57 ~~~a~~~~~~a~~~~-----------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 57 YAKALKSYEKAAELG-----------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGR 123 (292)
T ss_pred HHHHHHHHHHhhhcC-----------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCC
Confidence 677777777775422 22566667777655 3468899999995544 5678899999999987
Q ss_pred --cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH-
Q 015907 205 --LGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYELK-------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA- 273 (398)
Q Consensus 205 --~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~- 273 (398)
..++.+|..+|+++.+..-.. ..+.+.++.+|..-. +...|...|.++-... ++.+...+|.+|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcC
Confidence 459999999999999875433 344778888887642 2347889999888766 67888999988854
Q ss_pred ---cCCchHHHHHHHHHHH
Q 015907 274 ---AKKPDEAVQFLLASRE 289 (398)
Q Consensus 274 ---~~~~~~A~~~~~~a~~ 289 (398)
..++.+|..+|.++..
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 4578999999998854
No 282
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.82 E-value=0.012 Score=54.82 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=86.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH-HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE-AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 206 (398)
+| ...|+..+..++... |... ....+++.+....|-..+|-.++.+++.+....+...+.+|+.+..+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~---------p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLA---------PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cCCcHHHHHHHHHHhccC---------hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 88 889999999998776 5433 356789999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
+.+.|++.++++++.+|+++.+...|-.+-.
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999887666554433
No 283
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.44 Score=44.54 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|..+.-.+..+..+...|+.+.|+..++..++ +.- ...++.+|.++..+.+|..|...+..+.+.....-..|.
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 66666666677777777777777788777766 221 235677888888888888888888888777654444444
Q ss_pred HHH-HHHHH--------ccCHHHHHHHHHHH---HhhCCCCCH-H-HHHHHHHHHHHcCC--chHHHH--HHHHHH--HH
Q 015907 231 LLG-EVKYE--------LKDYEGSAAAYRVS---TMVSKDINF-E-VLRGLTNALLAAKK--PDEAVQ--FLLASR--ER 290 (398)
Q Consensus 231 ~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~-~-~~~~la~~~~~~~~--~~~A~~--~~~~a~--~~ 290 (398)
.++ .|+.. .|+.+.|-.+++.. +...|...| + .....+.-+...+. ....+. +++-+. ..
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 443 33322 23444444433332 222222000 0 11111222222220 000000 000000 00
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchH---HHHHHHHHHhCCChHHHHHHHHHHHHh---CCC----ChHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV---ELLLGKAYSDGGRVSDAVAVYDRLISS---YPN----DFRGYLAK 360 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~l 360 (398)
++.-....+. ....+....... ++++. ++.+|.++..+|+...|..+|...++. ... .|.+++.+
T Consensus 422 f~~~s~~~l~----k~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YEl 496 (546)
T KOG3783|consen 422 FSRMSKNELE----KMRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYEL 496 (546)
T ss_pred cccCChhhHH----HHHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 0000000000 000000001112 34432 334999999999999999999988742 111 26799999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCC
Q 015907 361 GIILKENGK-VGDAERMFIQARFFAPE 386 (398)
Q Consensus 361 a~~~~~~g~-~~~A~~~~~~al~~~p~ 386 (398)
|..|..+|. ..++..++.+|-+...+
T Consensus 497 A~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 497 ALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999 99999999999887644
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.79 E-value=0.0052 Score=52.60 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
-...+.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34455666788999999999999999999999999999999999999999999999999999999888766543
No 285
>PRK10941 hypothetical protein; Provisional
Probab=96.78 E-value=0.019 Score=49.65 Aligned_cols=77 Identities=14% Similarity=0.003 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+.++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|...++..++..|+ ++.+-.....+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~-dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE-DPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999998 777655444433
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.77 E-value=0.043 Score=42.87 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
..+..+..+-...++.+++..++.-+--+.|..++.-..-|.++...|++.+|+..++.+....|. .+.+--.++.++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHH
Confidence 355666677788899999999999999999999999999999999999999999999999888888 8888888999999
Q ss_pred HcCCch
Q 015907 273 AAKKPD 278 (398)
Q Consensus 273 ~~~~~~ 278 (398)
..++++
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 988865
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.035 Score=51.00 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhh
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD-YEGSAAAYRVSTMV 255 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 255 (398)
-...|+.++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 35667777777788888888877777777778888888888888888888888877766666554 78888888888888
Q ss_pred CCCCCHHHHHH
Q 015907 256 SKDINFEVLRG 266 (398)
Q Consensus 256 ~p~~~~~~~~~ 266 (398)
+|+ .+..|..
T Consensus 170 npd-sp~Lw~e 179 (568)
T KOG2396|consen 170 NPD-SPKLWKE 179 (568)
T ss_pred CCC-ChHHHHH
Confidence 888 7776644
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.71 E-value=0.089 Score=50.38 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTAL----------EGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
..++..|..++......-.++.|...|-++-... . .... ...|.+-..-|++++|...|-.+-..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-G-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-c-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 4577889999999888888888988887764321 1 1111 223444445588888888775542211
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.-..++...|+|-...+.++..-.-+.+ .-..++.++|..+..+..|++|.++|..+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1124455667776666655532211111 02347788888888888888888888655
No 289
>PRK10941 hypothetical protein; Provisional
Probab=96.70 E-value=0.03 Score=48.42 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
...++-.+|...++++.|+.+.+.++.+.|+ ++.-+...|.+|.+.|.+..|..-++..++..+..|...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 4556677888888888888888888888888 8888888888888888888888888888888777776433
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.67 E-value=0.21 Score=45.51 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=110.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC-----------CC---HHHHHHHHH
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------------SKD-----------IN---FEVLRGLTN 269 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p~-----------~~---~~~~~~la~ 269 (398)
.+..+|-+.+++..++.++..+|+...|.+..++|+-. ++. .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 45678999999999999999999999999999888632 111 01 124566777
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+.+.|-+..|+++.+-.+.+.+ ..||--+.+.+=....+.++++--+..++.....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp-----------------------~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDP-----------------------DEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCC-----------------------CCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 88899999999999877644322 1234445555666667888888777777765542
Q ss_pred CC-----CChHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCChHHHHH
Q 015907 350 YP-----NDFRGYLAKGIILKENGKV---------------GDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 350 ~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.. ..+...+..+.++...++. +.|...+.+|+...|.-...+.+
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 1345677888888888888 89999999999988865554443
No 291
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.67 E-value=0.0036 Score=34.00 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.++..+|.++..+|++++|+..|++++.++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888877775
No 292
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.19 Score=47.23 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=113.3
Q ss_pred HhccHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---------
Q 015907 170 EKNVLQTRLKKYEETLSI------------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-----KP--------- 223 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p--------- 223 (398)
....|++|...|.-+... .|.+.+.+..++.+...+|+.+-|..+.++++-. .|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345677888888777654 4666789999999999999999999888887632 22
Q ss_pred -------CCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhc
Q 015907 224 -------SDPD---VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL-LAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 224 -------~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.+-. +++..-..+...|=+..|.++.+-++.++|..+|-+...+...| ++..+|.--++.++.....-.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 2211 22333445566889999999999999999986676665555555 566777766666655433111
Q ss_pred CCCCCchhhhccccccccccccccCCCchHHHH-HHHHHHhCCC---hHHHHHHHHHHHHhCC
Q 015907 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL-LGKAYSDGGR---VSDAVAVYDRLISSYP 351 (398)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~---~~~A~~~~~~al~~~p 351 (398)
+...|+..+.. +|..|..... -+.|...+.+|+...|
T Consensus 410 ----------------------l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 410 ----------------------LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ----------------------HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 34556665554 8888888776 5788899999988776
No 293
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.57 E-value=0.037 Score=39.06 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLL 285 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 285 (398)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. +..+...+..++...|.-+....-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4567888999999999999999999999999999999999999998873 35677777777777777554444443
No 294
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.55 E-value=0.12 Score=49.92 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.|-.++.-|...|+|+.|.++|.++- ....-...|.+.|++..|.+.-++.. .|+.....|...+.-+-.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedlde 836 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDE 836 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHh
Confidence 34445666666677777766665531 12223345556666666666555543 233223345555555666
Q ss_pred cCCchHHHHHH
Q 015907 274 AKKPDEAVQFL 284 (398)
Q Consensus 274 ~~~~~~A~~~~ 284 (398)
.|+|.+|.++|
T Consensus 837 hgkf~eaeqly 847 (1636)
T KOG3616|consen 837 HGKFAEAEQLY 847 (1636)
T ss_pred hcchhhhhhee
Confidence 66666666655
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.55 E-value=0.038 Score=40.07 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
.++++|.++..+.|. ....++.+|.-+-....|++++.--++++
T Consensus 62 ~sve~~s~a~~Lsp~-~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 62 GSVECFSRAVELSPD-SAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HhHHHHHHHhccChh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 567788888888887 66677777766555555666655555543
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.48 E-value=0.0054 Score=50.31 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=56.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+.++.+.|.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778999999999999999999999999999999999999999999999999999864
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.46 E-value=0.057 Score=41.46 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+..........++.+++...+...--+.|+.++.-..-|.+++..|+|.+|+..++.+.+..+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33344444557888888888888888889888888888889999999999999998888877777777777788877776
Q ss_pred CH
Q 015907 241 DY 242 (398)
Q Consensus 241 ~~ 242 (398)
+.
T Consensus 93 Dp 94 (153)
T TIGR02561 93 DA 94 (153)
T ss_pred Ch
Confidence 54
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.26 E-value=0.06 Score=49.53 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~ 209 (398)
...-+.+|+.+...- +.+...|..........+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+
T Consensus 87 ~~rIv~lyr~at~rf---------~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~ 157 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRF---------NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIE 157 (568)
T ss_pred HHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchH
Confidence 455566788887776 78888998888777778889999999999999999999999999877777666 89
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~ 231 (398)
.|..++.+++..+|+.+..|..
T Consensus 158 saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 158 SARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHHhhcCCCChHHHHH
Confidence 9999999999999999877653
No 299
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.22 E-value=0.01 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
++..+|.++...|+++.|+.+|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555444
No 300
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.21 E-value=0.17 Score=37.07 Aligned_cols=94 Identities=21% Similarity=0.152 Sum_probs=53.5
Q ss_pred HHccCHHHHHHHHHHHHhhCCCC-----------CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDI-----------NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGR 305 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (398)
..-|-|++|...++++....... +.-.+..|+.++..+|+|++++..-..++..+....+
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE--------- 90 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE--------- 90 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-----------
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc---------
Confidence 34566777777777777653220 1235667788888888888887777666554432211
Q ss_pred cccccccccccCCCchHH----HHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 306 SGDKKETEPQKVDPIQVE----LLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
+..+....| +..+..+...|+.++|+..|+.+-+
T Consensus 91 ---------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 91 ---------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ---------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 112222222 2256666777777777777776654
No 301
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.20 E-value=0.047 Score=39.60 Aligned_cols=92 Identities=13% Similarity=0.057 Sum_probs=72.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGD-----------YTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 229 (398)
++..++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999988876 455566776654432 2368899999999999988888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+.+|.-+.....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777667778888877777765
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.17 E-value=0.26 Score=36.15 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK------------DSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|.-....|.|++|...+.++++.... +..++..|+..+..+|+|++++....+++.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34445567788888888888765321 133566777777778888777776666653
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.15 E-value=0.49 Score=37.44 Aligned_cols=136 Identities=13% Similarity=0.041 Sum_probs=78.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHHcCCc
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSD--PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---FEVLRGLTNALLAAKKP 277 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~la~~~~~~~~~ 277 (398)
.+.+..++|+..|..+-+..-.. .-+....+.+..+.|+...|+..|..+-...|-.. .-+...-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566677777776665543322 23455667777777777777777777766544310 12344455666677777
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++.....+.. . ...+|-..... ||..-.+.|++..|..+|.+... +...+.
T Consensus 149 ~dV~srvepL----a----------------------~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 149 DDVSSRVEPL----A----------------------GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred HHHHHHhhhc----c----------------------CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcH
Confidence 7655544221 0 12223333332 77777777888888888877665 444455
Q ss_pred HHHHHHHHHH
Q 015907 356 GYLAKGIILK 365 (398)
Q Consensus 356 ~~~~la~~~~ 365 (398)
...+.+.+..
T Consensus 202 nirqRAq~ml 211 (221)
T COG4649 202 NIRQRAQIML 211 (221)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.13 E-value=0.029 Score=51.21 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
.|+...|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.. ...+...+-......|++++|...-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGT-TDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcC-CchHHHHHHHhhhchhhHHHHHHHH
Confidence 355555555555555555555544444555555555555555444433322222 2223333344444455555554443
No 305
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.29 Score=41.58 Aligned_cols=199 Identities=12% Similarity=0.105 Sum_probs=121.4
Q ss_pred hccHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHHcc
Q 015907 171 KNVLQTRLKKYEETLSISPKDST----ALEGAAVTLAELGDYTRAVSLLQDLAKEKP-----SDPD-VFRLLGEVKYELK 240 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~-~~~~la~~~~~~g 240 (398)
..+.++|+..|++++++.|...+ ++..+..+++.+|+|++-.+.|.+++..-. +..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 45899999999999999987643 778888999999999999999998876321 1111 1111111111223
Q ss_pred CHHHHHHHHHHHHh---hCCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 241 DYEGSAAAYRVSTM---VSKDINFEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 241 ~~~~A~~~~~~al~---~~p~~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
+.+--.++|+..+. -.. +...| ..+|.+|+..++|..-...+.+..+........ ....+
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe-----------dD~kK 186 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE-----------DDQKK 186 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc-----------hhhhc
Confidence 33333334443332 221 22333 468999999999988877777665544332110 00000
Q ss_pred cccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH--H----HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 314 PQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR--G----YLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 314 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
...--+++..-..+|..+++-..-...|++++.+...-+. + ..-=|..+.+.|++++|..-|-.|++-.
T Consensus 187 --GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 187 --GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred --cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 0011134445667788888888888889999876543322 1 1122455778899999998888887653
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.06 E-value=0.16 Score=46.35 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.++..|+|.++.-+-.-+.++.| .+.++..+|.|+...++|++|..++...
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34555666666666666666666 5666666666666666666666666543
No 307
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.78 Score=43.85 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
++++-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.++++.|-+.+|. ++-....+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHH
Confidence 45666777889999999999999999987765 346788999999999999999999999999999 88888888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
-.+....+.-++|+.+..........
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 88888999999999999777665443
No 308
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.042 Score=50.79 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=87.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL---GDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
|...+-+..-|.-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...+++++|....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 334444455555556677888999999999999999999999999988765 67778888888999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|+.++.+++.+.+|+.+...+....|.
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 999999999999999999888888884
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.97 E-value=0.17 Score=38.88 Aligned_cols=83 Identities=16% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+.....+-...++.+++..++..+--+.|+.++.-..-|.++...|++.+|+..|+......+. .+...-.++.++..+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhc
Confidence 3444445556899999999999988899999999999999999999999999999999988877 677777788888888
Q ss_pred CCch
Q 015907 275 KKPD 278 (398)
Q Consensus 275 ~~~~ 278 (398)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8764
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.96 E-value=1.9 Score=42.65 Aligned_cols=184 Identities=15% Similarity=0.063 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCH
Q 015907 174 LQTRLKKYEETLSISPKD----STALEGAAVTLA-ELGDYTRAVSLLQDLAKEKPS--DP----DVFRLLGEVKYELKDY 242 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~ 242 (398)
...|+.+++-+++..+-. ..+...+|.++. ...++++|..++.+++.+... .. .+...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 456788998888533222 347888998887 789999999999999887643 22 3455678889888877
Q ss_pred HHHHHHHHHHHhhCCCC--CHH-HHHHH--HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccC
Q 015907 243 EGSAAAYRVSTMVSKDI--NFE-VLRGL--TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKV 317 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~--~~~-~~~~l--a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
. |....++.++..... ... ..+.+ ...+...+++..|++.++......... .
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----------------------~ 173 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----------------------G 173 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----------------------C
Confidence 7 999999998864331 112 11222 222333479999999998876643211 1
Q ss_pred CCc-hHHH--HHHHHHHhCCChHHHHHHHHHHHHhC------C----CChHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 015907 318 DPI-QVEL--LLGKAYSDGGRVSDAVAVYDRLISSY------P----NDFRGYLAKGII--LKENGKVGDAERMFIQA 380 (398)
Q Consensus 318 ~~~-~~~~--~la~~~~~~g~~~~A~~~~~~al~~~------p----~~~~~~~~la~~--~~~~g~~~~A~~~~~~a 380 (398)
+|. .+.. ..+.++...+..+++++..+++.... | ....+|..+-.+ +...|+++.+...+++.
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 1222 25667777888888888888875421 1 123445544443 45667776766655443
No 311
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.96 E-value=0.014 Score=47.88 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD 225 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 225 (398)
....++.+.|.+.|.+++.+.|+....|+.+|......|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445666666666666666666666666666666666666666666666666666654
No 312
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.35 Score=46.58 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.++..+|..+..+..|++|.++|.+.-. .-++..+++...+|++-..+. ..-|+ +...+-.+|..+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe-~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLA----RTLPE-DSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCc-ccchHHHHHHHHH
Confidence 3566666666666666666666654311 113344555544444433322 22355 5666667777777
Q ss_pred HcCCchHHHHHHHH
Q 015907 273 AAKKPDEAVQFLLA 286 (398)
Q Consensus 273 ~~~~~~~A~~~~~~ 286 (398)
..|--++|.+.|.+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 77777777777633
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.91 E-value=0.11 Score=39.05 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHh---ccHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 159 AGVVNKELSEEEK---NVLQTRLKKYEETLS-ISPKD-STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 159 ~~~~~la~~~~~~---g~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
+..+++++++... .+..+.+.+++..++ .+|.. -+..+.++..+++.++|+.++.+.+..++..|++..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556677666654 456677888888886 44443 467888888888889999999988888888888877654
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.90 E-value=0.23 Score=40.24 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
++..+|..|.+.|++++|+++|.++.+..... .+.+..+..+....+++.....++.++-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555555555555555555554432221 23444555555555555555555555443
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.89 E-value=2.1 Score=42.42 Aligned_cols=203 Identities=11% Similarity=-0.068 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS---PK------DSTALEGAAVTLAELGDYTRAVSLLQ--------DLAKEK 222 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~ 222 (398)
..+..+.+..-.+++..|...+..+.... |. .+..++..|..+...|+.+.|...|. .+....
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~ 442 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS 442 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Confidence 34556777788899999998888776542 22 36688999999999999999999998 333333
Q ss_pred CCCH---HHHHHHHHHHHHccCHHH----HHHHHHHHHh---hCCCCCHHHHHHHHHHHHH---cCCchHHHHHHHHHHH
Q 015907 223 PSDP---DVFRLLGEVKYELKDYEG----SAAAYRVSTM---VSKDINFEVLRGLTNALLA---AKKPDEAVQFLLASRE 289 (398)
Q Consensus 223 p~~~---~~~~~la~~~~~~g~~~~----A~~~~~~al~---~~p~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~ 289 (398)
+.+. -+..++..++...+.... ....++..-. ..|+.+...+..+...-.. .-...++...+..+++
T Consensus 443 ~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 443 KFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred cchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Confidence 3321 133445555555444322 3333333222 1222122222222221122 2233478888888777
Q ss_pred Hh-cCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC---hH-HH-----HH
Q 015907 290 RL-STGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND---FR-GY-----LA 359 (398)
Q Consensus 290 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~-~~-----~~ 359 (398)
.. ..... ..-..-....++..+. .|+..+.......+....... .. .| -.
T Consensus 523 ~~~~~~~n-------------------~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~ 582 (608)
T PF10345_consen 523 MANNKLGN-------------------SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGM 582 (608)
T ss_pred HHHHhhcc-------------------chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 55 21100 0000112333777776 788888777666666543333 33 33 24
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 015907 360 KGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+...+...|+.++|.....+.-.
T Consensus 583 l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 583 LADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 56668889999999988877644
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.87 E-value=1.7 Score=41.32 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=39.9
Q ss_pred HHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH-HHHHHhccHHHH
Q 015907 103 EIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE-LSEEEKNVLQTR 177 (398)
Q Consensus 103 A~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la-~~~~~~g~~~~A 177 (398)
+...|...+...|.-..-|.- .+.. +| ...+..+|++.+..- |.....|...- .+-...|+.+.-
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~k-fA~~E~klg~~~~s~~Vfergv~ai---------p~SvdlW~~Y~~f~~n~~~d~~~l 133 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKK-FADYEYKLGNAENSVKVFERGVQAI---------PLSVDLWLSYLAFLKNNNGDPETL 133 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHhh---------hhHHHHHHHHHHHHhccCCCHHHH
Confidence 445566666666654433333 3333 55 677777777776555 55555554332 222233455555
Q ss_pred HHHHHHHHhcC
Q 015907 178 LKKYEETLSIS 188 (398)
Q Consensus 178 ~~~~~~~l~~~ 188 (398)
...|+++....
T Consensus 134 r~~fe~A~~~v 144 (577)
T KOG1258|consen 134 RDLFERAKSYV 144 (577)
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.86 E-value=0.053 Score=40.71 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhCC---ChHHHHHHHHHHHH-hCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 321 QVELLLGKAYSDGG---RVSDAVAVYDRLIS-SYPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 321 ~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
...+++++++.... +..+.+.+++..++ -+|.. -+..+.|+..+++.++|+.++.+....++..|++.++..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 45666888887664 56788999999996 45543 568889999999999999999999999999999988754
No 318
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.86 E-value=0.017 Score=49.68 Aligned_cols=81 Identities=6% Similarity=0.089 Sum_probs=67.7
Q ss_pred ccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 315 QKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLA-KGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 315 ~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
....+.++.+| .+......|-+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...|.+++.++|++|..|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34556666555 5555566788899999999999999999999988 56667889999999999999999999999999
Q ss_pred HHhh
Q 015907 392 VDQY 395 (398)
Q Consensus 392 ~~l~ 395 (398)
+..+
T Consensus 180 ~eyf 183 (435)
T COG5191 180 IEYF 183 (435)
T ss_pred HHHH
Confidence 8754
No 319
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.85 E-value=0.1 Score=42.31 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD--INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
++..+|..|...|+.++|++.|.++...... .-.+.+..+..+....+++.....++.++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555566666666666666666655543321 12334455555555666666666666555443
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.75 E-value=0.12 Score=47.31 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=100.9
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|+.-.|-.-+..++...|.+|......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45688888888889999999999999999999999999999999998877665554455666666777889999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
-+-.+...-+ ++++...-+......|-++++..++++...+.+
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9988877666 777777777777788889999999988765443
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.73 E-value=1.3 Score=38.93 Aligned_cols=120 Identities=19% Similarity=0.164 Sum_probs=89.3
Q ss_pred HHhccHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------
Q 015907 169 EEKNVLQTRLKKYEETLSIS----PKD----STALEGAAVTLAELG-DYTRAVSLLQDLAKE----KPS---D------- 225 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~---~------- 225 (398)
...|+++.|..++.++-... |+. ...+++.|......+ ++++|..+++++.++ .+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999986654 332 346788888888999 999999999999887 221 1
Q ss_pred HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 226 PDVFRLLGEVKYELKDYE---GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
..++..++.+|...+.++ +|..+.+.+-...|+ .+..+...-.++...++.+++.+.+.+++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 246778899999888765 455555556566677 677775555666668889999999988766
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.9 Score=36.02 Aligned_cols=126 Identities=14% Similarity=0.047 Sum_probs=95.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKD--STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--D--PDVFRLLGEV 235 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~ 235 (398)
+..+.-+...+..++|+..|...-+..-.. ..+.+..+.+..+.|+...|+..|..+-...|- - ..+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555667889999999998877654333 457788899999999999999999998765432 1 2345556778
Q ss_pred HHHccCHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTM-VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASR 288 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 288 (398)
+...|-|+....-.+..-. .+|- ...+.-.||...++.|++..|..+|.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 8889999988777665432 2344 56677889999999999999999997763
No 323
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.45 E-value=0.19 Score=51.71 Aligned_cols=172 Identities=11% Similarity=0.122 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhccHHHHHH------HHHH-HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C
Q 015907 159 AGVVNKELSEEEKNVLQTRLK------KYEE-TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--------P 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p 223 (398)
.-....|......|.+.+|.+ .+.. .-.+.|.....+..++.++..+|++++|+..-.++.-+. |
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344455666666677776666 5653 334578889999999999999999999999988876542 4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
+....+.+++...+..++...|...+.++..+ .|. ......+++.++...++++.|+.+++.|........
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667888888888889999999999888765 344 344567888888899999999999999877332220
Q ss_pred CCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
. .........+..++..+...+++..|+........
T Consensus 1092 g-----------------~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1092 G-----------------PKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred C-----------------ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 0 00011122333477777777887777776666554
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.45 E-value=0.23 Score=41.50 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH-------HHHHHHHHHhcCCC--C----HHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT-------RLKKYEETLSISPK--D----STALEG 197 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-------A~~~~~~~l~~~p~--~----~~~~~~ 197 (398)
++.|+..|..|+-........ ....+..+..+|++|...|+.+. |+..|.++++.... . ..+.+.
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~--~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEK--PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 455555555554332111111 01234556677777777776443 33333333332211 1 234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
+|.+..+.|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 555555555555555555555543
No 325
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.52 Score=44.57 Aligned_cols=100 Identities=15% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQD-LAKEKPSDPDVFRLL------GEVKY 237 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~ 237 (398)
...+...+....+...+..++..+|++..+..+++......|..-.+...+.. +....|.+..+...+ +....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 44444455555566666666666666666666666655555555544444433 555555554433333 55555
Q ss_pred HccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 238 ELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
.+|+..++....+++..+.|. ++++..
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~-~~~~~~ 180 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPK-YPRVLG 180 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhh-hhhhHh
Confidence 556666666666666666655 444433
No 326
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=1 Score=42.56 Aligned_cols=136 Identities=17% Similarity=0.132 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----C----------------CCCHH---HHHHHHHHHHHcCCHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-----S----------------PKDST---ALEGAAVTLAELGDYTR 210 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~----------------p~~~~---~~~~la~~~~~~g~~~~ 210 (398)
|-+...+..++.+...+|+.+.|....++++-. . |.+-. +++..-..+.+.|-+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 888888999999999999988887777776531 1 22221 34444556677899999
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHcCC---chHH
Q 015907 211 AVSLLQDLAKEKPS-DPDVFRLLGEVKY-ELKDYEGSAAAYRVST-----MVSKDINFEVLRGLTNALLAAKK---PDEA 280 (398)
Q Consensus 211 A~~~~~~al~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al-----~~~p~~~~~~~~~la~~~~~~~~---~~~A 280 (398)
|.++++-++.++|. +|.+...+..+|. ...+|.=-++.++..- ..-|+ ...-..++..|..... -+.|
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN--~~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN--FGYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC--chHHHHHHHHHHhcCChhhHHHH
Confidence 99999999999998 7765555554443 4456666666665542 23343 3333456666666555 4678
Q ss_pred HHHHHHHHHHhc
Q 015907 281 VQFLLASRERLS 292 (398)
Q Consensus 281 ~~~~~~a~~~~~ 292 (398)
...+.+|++..+
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 888888877665
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=1.9 Score=47.69 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG-EVKYEL 239 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~ 239 (398)
+...-..+...|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+....
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 4455566778899999999999999999998877777777788888888888877766665555555555544 344556
Q ss_pred cCHHHHHHHHH-------------HHHhhCCCCCHHHH-HHHHHHHH----------HcCCchHHHHHHHHHH-------
Q 015907 240 KDYEGSAAAYR-------------VSTMVSKDINFEVL-RGLTNALL----------AAKKPDEAVQFLLASR------- 288 (398)
Q Consensus 240 g~~~~A~~~~~-------------~al~~~p~~~~~~~-~~la~~~~----------~~~~~~~A~~~~~~a~------- 288 (398)
++++.-..+.. +++-..+..+..+. ..+..... ..|.|..+.++.-+..
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 66665554422 11101111011110 00000000 0111222222221111
Q ss_pred --HHhcC-CCC------C-chhhhccccc------c----------cc-ccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 289 --ERLST-GKS------D-DLSVKDGRSG------D----------KK-ETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 289 --~~~~~-~~~------~-~~~~~~~~~~------~----------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
+.+.. .++ . +....+...+ + .. ...-....-.+.|...|.+....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 00000 011 1 0001111111 0 00 0111222334677779999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
++-.|.+.. -+.++...|..+...|+...|+..+++.++.+
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999988766 57889999999999999999999999999653
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.34 E-value=0.047 Score=31.90 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.++.++|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788899999999999999999888875
No 329
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.29 E-value=0.046 Score=47.11 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG-AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|.++..|...+......+.+.+--..|.+++..+|.+.+.|.. .+.-+...++++.+...+.+++..+|+.+..|.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4444455444444444445555555555555555555555444 333444445555555555555555555554443
No 330
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.27 E-value=2.4 Score=39.02 Aligned_cols=221 Identities=11% Similarity=0.016 Sum_probs=142.9
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 215 (398)
-.+++++..- |-.++.|+.........++-+.|+...++++...|. ....++.+|-...+-+.-..+|
T Consensus 289 y~~~q~~~y~---------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~f 356 (660)
T COG5107 289 YIHNQILDYF---------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCF 356 (660)
T ss_pred HHHHHHHHHh---------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhH
Confidence 3455666555 777888998888888899999999999988877765 5566777777666666666666
Q ss_pred HHHHHh--------C-------CCC----HH-----------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 216 QDLAKE--------K-------PSD----PD-----------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 216 ~~al~~--------~-------p~~----~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
+++... + .++ ++ +|..+-..-.+..-.+.|...|-++-+..-. ..+++.
T Consensus 357 dk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~-~h~vyi 435 (660)
T COG5107 357 DKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV-GHHVYI 435 (660)
T ss_pred HHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC-Ccceee
Confidence 665431 0 011 11 1222222223334466777777777655422 344443
Q ss_pred HHHH-HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch-HHHH-HHHHHHhCCChHHHHHH
Q 015907 266 GLTN-ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ-VELL-LGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 266 ~la~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-la~~~~~~g~~~~A~~~ 342 (398)
.-|. -+...|++..|...|+-.+..+ |+. ++.. .-..+...++-..|...
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f---------------------------~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKF---------------------------PDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhC---------------------------CCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 3333 3467899999999998775533 332 2222 55566788999999999
Q ss_pred HHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--hHHHHHhhh
Q 015907 343 YDRLISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK--VKALVDQYS 396 (398)
Q Consensus 343 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~ 396 (398)
|+++++.-..+ -.+|-.+...-..-|+...++.+-++..++.|.. ..+...+|.
T Consensus 489 Fetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 489 FETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 99888643333 4566666666677788888888888888888764 444545554
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.27 E-value=1.2 Score=38.03 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=102.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHHcC
Q 015907 205 LGDYTRAVSLLQDLAKEKPSDP----DVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~~ 275 (398)
..++++|+..|++++++.+... .++..+..+++.++++++-.+.|.+.+..- .+........+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4588999999999999988653 467778889999999999999998887531 1111222222222222334
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH----HHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL----LGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
+.+--...|+..+..+.... ....|+. +|.+|...++|..-...+.+.-....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-----------------------NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq 176 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-----------------------NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQ 176 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-----------------------cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444333221 1233332 99999999998887777766543211
Q ss_pred C------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 352 N------------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 352 ~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
. -.++|..-..+|-.+.+-..-..+|++++.+..-.|
T Consensus 177 ~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 177 TEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred cccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 1 134555666778888888888888999987754433
No 332
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.24 E-value=2.5 Score=38.99 Aligned_cols=192 Identities=10% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH------HHHHH-HcCCHHHH---HHHHHHHHHhCCCC---HHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGA------AVTLA-ELGDYTRA---VSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------a~~~~-~~g~~~~A---~~~~~~al~~~p~~---~~~~~~l 232 (398)
......++...|..++.-...++|+....-..+ -.+.. ...++..- +.+++.+-..+-+. ...+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344566778888888877777788764211111 01111 11111111 22222222222221 2234455
Q ss_pred HHHHHHccC-HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH--HHHHHHHhcCCCCCchhhhccccccc
Q 015907 233 GEVKYELKD-YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF--LLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 233 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
|.-+.+.|+ -++|++.++.+++..|. +.......- .+ -...|.+|+.. +-+.+++..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~-~f-vKq~Y~qaLs~~~~~rLlkLe~----------------- 445 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVF-LF-VKQAYKQALSMHAIPRLLKLED----------------- 445 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHH-HH-HHHHHHHHHhhhhHHHHHHHHH-----------------
Confidence 667777777 78899999999988887 654322211 11 11122222221 111111100
Q ss_pred cccccccCCCc-----hHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 310 KETEPQKVDPI-----QVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 310 ~~~~~~~~~~~-----~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+....+..|. +.... =|..+..+|+|.++.-+-.=..++.| ++.++..+|.|+....+|++|..++..
T Consensus 446 -fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 446 -FITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred -HHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 0000122232 22222 34567889999999998888888999 899999999999999999999998864
No 333
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.23 E-value=1.2 Score=42.73 Aligned_cols=177 Identities=15% Similarity=0.095 Sum_probs=95.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPK----DSTALEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVK 236 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 236 (398)
.++..+.-.|++.+|...|.+.=..+.- ...-.+.++.-++..|..++-..+.++-.+ .+-+.|. .-+..+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL 713 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML 713 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence 4667777788888888888653211100 001234445555555665555555444322 1122222 235667
Q ss_pred HHccCHHHHHHHHH------HHH----hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 237 YELKDYEGSAAAYR------VST----MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 237 ~~~g~~~~A~~~~~------~al----~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
...|+.++|+...- -++ +++.. ..+.+..++..+.....+.-|-+.|.+.-.
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~-ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------------- 775 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKA-EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------------- 775 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchh-hhhHHHHHHHHHhhccccchHHHHHHHhcc-----------------
Confidence 77788887776431 222 23333 445556666666666666666666654411
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-FRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
...+...+...++|.+|....++ .|.. +++++-.|+.+.+..++++|.+.|.+|
T Consensus 776 ----------------~ksiVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 776 ----------------LKSLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ----------------HHHHhhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 11255566677777777766554 3333 345556666666666666666555443
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.17 E-value=0.28 Score=41.00 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 192 STALEGAAVTLAELGDYTR-------AVSLLQDLAKEKP------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~-------A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+..+..+|.+|...|+.+. |++.|.++++... +...+.+.+|.+..+.|++++|..+|.+++.....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4578888999999998554 5555555554332 12467888999999999999999999999986544
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.13 E-value=3.2 Score=42.79 Aligned_cols=85 Identities=16% Similarity=0.248 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL-----KDYEGSAA 247 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~ 247 (398)
.+++|+..|++... .|..|--|.+.|.+|..+|+|++-+++|.-+++..|..|..-...-.+..++ .+...|..
T Consensus 534 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (932)
T PRK13184 534 DFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV 612 (932)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777877776543 5666777888888899999999999999999998888765433322222221 12334555
Q ss_pred HHHHHHhhCCC
Q 015907 248 AYRVSTMVSKD 258 (398)
Q Consensus 248 ~~~~al~~~p~ 258 (398)
..--++...|.
T Consensus 613 ~~~~~~~~~~~ 623 (932)
T PRK13184 613 FMLLALWIAPE 623 (932)
T ss_pred HHHHHHHhCcc
Confidence 55555666665
No 336
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.12 E-value=0.37 Score=49.81 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-------C-CCC
Q 015907 195 LEGAAVTLAELGDYTRAVS------LLQD-LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-------S-KDI 259 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~-p~~ 259 (398)
....+......|.+.+|.+ ++.. .-.+.|.....+..++.++...+++++|+..-.++.-+ + |+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~- 1013 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN- 1013 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-
Confidence 4556666777788887777 5442 23356788889999999999999999999988777543 2 33
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVS 337 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~ 337 (398)
....+.+++...+..++...|+..+.++.......-. ...|. ....+++.++...++++
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g-------------------e~hP~~a~~~~nle~l~~~v~e~d 1074 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG-------------------EDHPPTALSFINLELLLLGVEEAD 1074 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC-------------------CCCCchhhhhhHHHHHHhhHHHHH
Confidence 5567888888888999999999999988776543311 12343 34455888889999999
Q ss_pred HHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 338 DAVAVYDRLISSYPN--------DFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 338 ~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.|+.+.+.|+..... ....+..+++.+..++++..|....+....
T Consensus 1075 ~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1075 TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 999999999875322 245677788888888888888777766554
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.07 E-value=0.066 Score=31.22 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555556666666666666666555543
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.95 E-value=1.6 Score=40.99 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=65.0
Q ss_pred HHHHHhccHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 166 LSEEEKNVLQTRLKKYE--ETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
......++++++..... +.+..-| ..-...++..+...|-++.|+.+. .++...+.|+ .+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence 34456788888776665 2232223 344666777888888888888764 3455555554 5778888
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.|.+..+. .+ ++..|..||.....+|+++-|..+|+++
T Consensus 336 ~A~~~a~~-----~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 336 IALEIAKE-----LD-DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCCC-----CS-THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHh-----cC-cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88776542 23 6889999999999999999999999775
No 339
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.42 Score=45.57 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=80.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
-+-|.-+++..+|..++++|...+...|.+ ......++.||..+.+.+.|.++++.+-+.+|.++-....+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 345677788999999999999999887766 34677889999999999999999999999999998888888888
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 015907 236 KYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~ 255 (398)
....|.-++|+.+.......
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhcchHHHHHHHHHHHhh
Confidence 88889999999888776544
No 340
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=1.6 Score=41.39 Aligned_cols=133 Identities=17% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH-H
Q 015907 211 AVSLLQDLAKEKPSDPDVFRL--LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA-S 287 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a 287 (398)
++..+...+.++|.++..+.. +...+...+....+.-.+...+..+|+ +..+..+|+.+....|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPE-NCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcc-cchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555655554322 244555556666666666666666666 666666666666655555555444433 2
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
....+.+.. -..+....+.++.....+|+..++.....++....|.++.....+...
T Consensus 129 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAE-------------------FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHH-------------------HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 221111100 000001111146666667777777777777777777665544444333
No 341
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.30 E-value=0.2 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERM--FIQARFFAPEK 387 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~~ 387 (398)
+.++.+|-.+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777788888888888888 44666666653
No 342
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.48 Score=40.56 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+..|++.++..++.-|+ ++.+-....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~-~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD-DPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC-chHHHHHHH
Confidence 34455567888999999999999999999999999999999999999999999999999999998 666544433
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.93 E-value=0.66 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA---LEGAAVTLAELGDYTRAVSLLQDLA 219 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al 219 (398)
....|.-++...+.++|+..+.++++..++.+.- +-.+..+|...|+|.+.+.+..+=+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677777777777777766665543 3334455666677777666654433
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.92 E-value=0.57 Score=40.61 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
..++..++..+...|+++.++..+++.+..+|- +-..|..+-.+|...|+...|+..|++.......
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e 219 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE 219 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence 446667777777777888888888888888887 7777777778888888888888888776665433
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=4.7 Score=36.71 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP--DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
..++-+.+...++..+|+ ...+|+....++...+.. ..-+.+.+++++ .+
T Consensus 90 ~ld~eL~~~~~~L~~npk-sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~---------------------------~D 141 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPK-SYGAWHHRKWVLQKNPHSDWNTELQLCEKALK---------------------------QD 141 (421)
T ss_pred hhHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------------------------cC
Confidence 356667777778888888 778888888888766544 455556655543 33
Q ss_pred Cc--hHHHH----HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------cCC------HHHHHHHHHHH
Q 015907 319 PI--QVELL----LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE------NGK------VGDAERMFIQA 380 (398)
Q Consensus 319 ~~--~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~a 380 (398)
|. ..|.+ .+.+-.......+=+++..+++..++.+..+|.+...++.. .|+ ...-.+.-..|
T Consensus 142 ~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~sa 221 (421)
T KOG0529|consen 142 PRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSA 221 (421)
T ss_pred cccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHH
Confidence 33 23333 22222333345666788888888888899999888777762 232 23445667788
Q ss_pred HhhCCCChHHHHH
Q 015907 381 RFFAPEKVKALVD 393 (398)
Q Consensus 381 l~~~p~~~~~~~~ 393 (398)
+-.+|+|.-+|.-
T Consensus 222 iFTdp~DqS~WfY 234 (421)
T KOG0529|consen 222 IFTDPEDQSCWFY 234 (421)
T ss_pred HhcCccccceeee
Confidence 8889999888753
No 346
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.85 E-value=4.4 Score=35.80 Aligned_cols=109 Identities=14% Similarity=0.015 Sum_probs=54.0
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
...+..+..+-++.-..+++++|.-..++..++.-- .--..+|..+++++++... ..++........|...+|
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da- 265 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEA- 265 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhh-
Confidence 333445555556666666777776666666655432 2234566666666665432 111122222222221111
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..+.+.+.-......++.+..++|+..+|++.++..
T Consensus 266 -----~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 266 -----QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred -----hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122222211223356677777777777777777555
No 347
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.78 E-value=0.39 Score=34.23 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
++..+|.++...|++++|+..+++++.+.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666553
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.77 E-value=6.1 Score=37.16 Aligned_cols=203 Identities=14% Similarity=0.036 Sum_probs=133.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|-+...+..+-.++..+..+.-......+++... .+-.+++.++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3333445555555555556666667777777764 5677899999999988 6778888999999988888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhC-CCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS-KDI----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
.|.. ++-..+..+|.+++... |.. --++|..+-.. --.+.+.-+....+.....
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~l------------------ 199 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKL------------------ 199 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhh------------------
Confidence 7776 88899999999988643 210 11233333211 1233444444443332211
Q ss_pred cccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cC
Q 015907 310 KETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE--------------------NG 368 (398)
Q Consensus 310 ~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g 368 (398)
......+... +-.-|....++.+|+..+...++.+..+..+.-++...+.. -.
T Consensus 200 ------g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~r 273 (711)
T COG1747 200 ------GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGR 273 (711)
T ss_pred ------ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccc
Confidence 1112233333 44567778899999999999999998888877777766655 44
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 015907 369 KVGDAERMFIQARFFAPE 386 (398)
Q Consensus 369 ~~~~A~~~~~~al~~~p~ 386 (398)
++.+++.-|++.+.++..
T Consensus 274 nf~~~l~dFek~m~f~eG 291 (711)
T COG1747 274 NFFEALNDFEKLMHFDEG 291 (711)
T ss_pred cHHHHHHHHHHHheeccC
Confidence 566777777776665544
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.76 E-value=2.1 Score=40.32 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 201 TLAELGDYTRAVSLLQ--DLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
.....++++++..... +.+..-| ..-...++..+...|.++.|+..-+ +++..+.|+ .+.|+.+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHHH---HhcCCHH
Confidence 3445688888877765 2222223 3345667777778888877766542 466666655 7889999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH--------hC
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS--------SY 350 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~ 350 (398)
.|.+.. ...+....|-.||.....+|+++-|..+|+++-. .-
T Consensus 336 ~A~~~a------------------------------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~ 385 (443)
T PF04053_consen 336 IALEIA------------------------------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSS 385 (443)
T ss_dssp HHHHHC------------------------------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHH------------------------------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHH
Confidence 998874 2333445677799999999999999999988532 12
Q ss_pred CCChHHHHHHHHHHHHcCCHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDA 373 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A 373 (398)
-.+.+.+..++......|++.-|
T Consensus 386 ~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT-HHHH
T ss_pred hCCHHHHHHHHHHHHHccCHHHH
Confidence 33444444555555555544443
No 350
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.70 E-value=0.32 Score=27.50 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~ 214 (398)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344444555555555555555
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.56 E-value=0.13 Score=26.63 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 015907 355 RGYLAKGIILKENGKVGDAERMFI 378 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~ 378 (398)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777766654
No 352
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.45 E-value=0.42 Score=34.07 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=45.7
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKD---------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
.....|++.+|++.+.+.++..... ..++..+|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3457899999988888877653221 35678899999999999999999999998753
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=4.8 Score=34.80 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=125.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--CCCHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKE---K--PSDPDV 228 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~--p~~~~~ 228 (398)
..++.-....+++++|+..|.+.+..... ...+...++.+|...|++..-.+.....-+. . |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45667777889999999999999876321 1346788999999999987655544433221 1 222222
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHhhCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhh
Q 015907 229 FRLLGEV-KYELKDYEGSAAAYRVSTMVSKDIN-----FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK 302 (398)
Q Consensus 229 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 302 (398)
...+..- -.....++.-+......++...... ...-..+..++...|+|.+|+......+..+....+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD------ 160 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD------ 160 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC------
Confidence 2222211 1223456666666666665532201 122345788889999999999998776654432211
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CCCChH--HHHHHHHHHHHcCCHHHHHH
Q 015907 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS-----YPNDFR--GYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~la~~~~~~g~~~~A~~ 375 (398)
.+.-.+++..-..+|....+..++..-+..+-.. .|.... .-..-|..+..-.+|..|..
T Consensus 161 -------------K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~S 227 (421)
T COG5159 161 -------------KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASS 227 (421)
T ss_pred -------------ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHH
Confidence 2333466677788888888888777766655432 232222 22334556667778888888
Q ss_pred HHHHHHhh
Q 015907 376 MFIQARFF 383 (398)
Q Consensus 376 ~~~~al~~ 383 (398)
+|-.+++-
T Consensus 228 YF~Ea~Eg 235 (421)
T COG5159 228 YFIEALEG 235 (421)
T ss_pred HHHHHHhc
Confidence 88888763
No 354
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=5.6 Score=35.30 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKE----KP--SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEV 263 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~ 263 (398)
-..+..+|...++|.+|+.+...++.. +. .-.+++..-..+|+...+..+|...+..|-... |. ...+
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP-qlQa 209 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP-QLQA 209 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH-HHHH
Confidence 346788999999999999988777652 22 124566666788888899998888887765432 21 1122
Q ss_pred --HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchH---HHHHHHHHHhCCChHH
Q 015907 264 --LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQV---ELLLGKAYSDGGRVSD 338 (398)
Q Consensus 264 --~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~ 338 (398)
-..-|.++....+|..|..+|-++.+.+..- . ++..+ .-++-.+-...+..++
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~---------------------~-~~v~A~~sLKYMlLcKIMln~~dd 267 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL---------------------D-DDVKALTSLKYMLLCKIMLNLPDD 267 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHcccccc---------------------C-CcHHHHHHHHHHHHHHHHhcCHHH
Confidence 2233556666789999999997776644322 1 11111 1123333344455554
Q ss_pred H--HHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Q 015907 339 A--VAVYDRLISSYPNDFRGYLAKGIILKE--NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 339 A--~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~ 386 (398)
- +-.-..+++....+.++....+..+.+ +.+|+.|...|+.-+..+|=
T Consensus 268 v~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 268 VAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 3 333445666666677888888877753 35788888888877776664
No 355
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.22 E-value=0.65 Score=40.27 Aligned_cols=64 Identities=22% Similarity=0.146 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
...++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3457778888888888899999999999999998888888888888889998888888887765
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.05 E-value=0.16 Score=26.23 Aligned_cols=21 Identities=33% Similarity=0.215 Sum_probs=9.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~ 215 (398)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444433
No 357
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.98 Score=38.72 Aligned_cols=67 Identities=10% Similarity=-0.104 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 296 (398)
..++=..+...++++.|..+.++.+.++|+ ++.-+...|.+|.+.|.+.-|+..+.......++.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 344556777788888888888888888888 8888888888888888888888888887777777765
No 358
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=5.8 Score=34.32 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCCHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-----KDINFEVL 264 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~ 264 (398)
..++.++++.|.|.+|+......+.. .|.-..++..-..+|....+..++...+..+-... |. ...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~ 207 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQ 207 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHH
Confidence 45678889999999999988776542 23335567777888888888888877776664432 22 22222
Q ss_pred --HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 265 --RGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 265 --~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
..-|.....-.+|..|..+|-++.+.+
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhcc
Confidence 223555677788999999997776644
No 359
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.79 E-value=0.42 Score=44.56 Aligned_cols=88 Identities=13% Similarity=-0.047 Sum_probs=74.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A 280 (398)
..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|. ...+|+.|+.++...+++.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s-~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS-IQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH-HHHHHHHHHHHHHHHhhHHHh
Confidence 345677899999999999999999999999888875 5666788888899999998 899999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 015907 281 VQFLLASRERLS 292 (398)
Q Consensus 281 ~~~~~~a~~~~~ 292 (398)
+++...+....+
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 999866644444
No 360
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=3 Score=37.85 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+-..|...+.|+.|-....+.. .|+ .....+.+|.+..-+++|..|.++|-+|+...|+
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5566666666666666555543 121 2345566666666666777777777777666665
No 361
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.67 E-value=1.6 Score=39.74 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=71.9
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcC--------CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSIS--------PKD----------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~--------p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
|..+++.++|..|.--|..++++. |.. ..+-..+..||..+++.+-|+....+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 456677788888887777777652 111 12456788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
.-+...|.|+..+.+|.+|...+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766553
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.64 E-value=2 Score=35.13 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=60.1
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHHcCCch
Q 015907 203 AELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD---INFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~la~~~~~~~~~~ 278 (398)
...-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+. .+++++..|+.++...|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33434467777666554322 256888888888777 57899999999999998654 36889999999999999999
Q ss_pred HHHHH
Q 015907 279 EAVQF 283 (398)
Q Consensus 279 ~A~~~ 283 (398)
.|--+
T Consensus 196 ~AYiw 200 (203)
T PF11207_consen 196 QAYIW 200 (203)
T ss_pred hhhhh
Confidence 88643
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.32 E-value=0.34 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.072 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+++..||.+-...++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888753
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=14 Score=37.83 Aligned_cols=177 Identities=11% Similarity=-0.048 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHH------
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS----PKDSTALEGAAVTLAELGDY--TRAVSLLQDLAKEKPSDPD------ 227 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~------ 227 (398)
-+..++..|...|++++|++.+.+..... +.....+...-..+...+.. +-..++-.-.++.+|...-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35677888889999999999998887733 33334444444555555555 5555665556665553210
Q ss_pred -------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc--------CCchHHHHH--HHHHHHH
Q 015907 228 -------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--------KKPDEAVQF--LLASRER 290 (398)
Q Consensus 228 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--------~~~~~A~~~--~~~a~~~ 290 (398)
.-.....-|......+-++.+++.++..........+..+...|... ++-+++.+. .++....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 00111223455677888899999998876553455555666555432 222344444 2222222
Q ss_pred hcCCCCCchhhhcccccccccccccc-CCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQK-VDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
++.... ......+. ..+...+...+.++.+.|+.++|+..|-..+.
T Consensus 666 l~~s~~------------Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDL------------YDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcc------------cCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222111 00000112 22233444488888899999999998877665
No 365
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.29 E-value=1.1 Score=40.81 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=51.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
+..||..+++.+-|+....+.+.++|..+.-+..-|.|+..+.+|.+|...+--+.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987665443
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.27 E-value=2.6 Score=34.55 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHH
Q 015907 318 DPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN----DFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 318 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+..+..+.+|..|. ..+.++++..+.+++++.+. +++++..|+.++..+|+++.|.-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 33455556887777 57899999999999997654 48999999999999999998854
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.99 E-value=1.9 Score=29.20 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=25.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHccCHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG---EVKYELKDYEGSAAAYR 250 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~ 250 (398)
++...+.++|+..++++++..++.+..+..+| .+|...|+|.+.+++--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655554444333333 44445555555555443
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.65 E-value=15 Score=36.51 Aligned_cols=211 Identities=10% Similarity=-0.032 Sum_probs=126.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDS----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
++..-....+.+.|...+.+.....+-+. .++..+|.-....+...+|..++..+..... +...+-....+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGT 325 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHc
Confidence 34444455666778777776544433222 2444555444444335677777776554322 223333334455578
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh-hhcccccccccc---ccc
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS-VKDGRSGDKKET---EPQ 315 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~ 315 (398)
++++.+...+..+-..... .....+.+|.++...|+.++|..+|+++... ..--+.+. ..+|..-..... ...
T Consensus 326 ~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa~~Lg~~~~~~~~~~~~~~ 402 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAAQRLGEEYPLKIDKAPKPD 402 (644)
T ss_pred cCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHHHHcCCCCCCCCCCCCchh
Confidence 8998888888775443344 6778899999999999999999999886331 11001110 011111000000 000
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
...+.......+..+...|+...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 403 ~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0011223445788889999999999999988874 34566788888889999999888776554
No 369
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.63 E-value=0.43 Score=27.33 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
++..||.+-...++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666665554
No 370
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=11 Score=34.45 Aligned_cols=99 Identities=15% Similarity=0.091 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD--YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL----KDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~ 246 (398)
-+++-+.+...++..+|+...+|+....++.+.+. +..=+.+..++++.+|.+..+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56677888899999999999999999999987764 57888999999999999988876554444332 2356778
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
++..++|..++. +..+|.....++.
T Consensus 170 ~ftt~~I~~nfS-NYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFS-NYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccch-hhhHHHHHHHHHH
Confidence 889999999998 8999988777765
No 371
>PF13041 PPR_2: PPR repeat family
Probab=91.41 E-value=1.4 Score=26.92 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
..|..+-..+.+.|++++|.+.|++..+..-..+...+..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555555556666666666555554322234444433
No 372
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.10 E-value=1.1 Score=39.28 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 211 AVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 211 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
|..+|.+|+.+.|.....++.+|.++...|+.-.|+-+|-+++-.... .+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555433322 34444444444443
No 373
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.99 E-value=0.79 Score=40.18 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 339 AVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 339 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|+.+|.+|+.+.|+....++.+|.++...|+.=+|+-+|-+++-...-.+.+..|+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL 56 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENL 56 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 67899999999999999999999999999999999999999986654446665554
No 374
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.90 E-value=14 Score=34.63 Aligned_cols=97 Identities=16% Similarity=-0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC---
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDY-------TRAVSLLQDLAKEK--- 222 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~--- 222 (398)
.....+|..++..++|+-|...|+.+.+-.-++ +.+....|.++...+.. ++...+++.++...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345568999999999999999999887744322 12334444444444422 13333333332211
Q ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 223 --------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 223 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
..-..+....+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111234444556666666666665555554443
No 375
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.86 E-value=19 Score=35.96 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+..-+........++++....++..+-..........+.+|..+...|+.++|..+|+++..
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444455556788888877777775443445677888899998889999999999988744
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.19 E-value=13 Score=33.02 Aligned_cols=122 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVF 229 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 229 (398)
...+|..+.++..++.- +..-..+|...|+++++.. +..+.........|...+|. .+.+.+. ..+.
T Consensus 211 LeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rRDtnvl~YIK 278 (556)
T KOG3807|consen 211 LEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRRDTNVLVYIK 278 (556)
T ss_pred HhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhcccchhhHHH
Confidence 34456666666665543 3344677888888888743 22222333333333332222 2222211 2355
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
..++.|..++|+..+|++.|+...+..|-. -..++-++...+....-|.+....+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998877641 1235566666666665555555444
No 377
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.04 E-value=18 Score=34.41 Aligned_cols=223 Identities=11% Similarity=-0.051 Sum_probs=123.9
Q ss_pred HHhhcchhhcCCCchhhhhhhcchh--hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHH
Q 015907 104 IKEFGPIDYDAPIETEKKTIGLGTK--IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKK 180 (398)
Q Consensus 104 ~~~~~~~~~~~p~~~~~~~~~lg~~--~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 180 (398)
.+.+.......|+++......-+++ .| .+.|+.++...+... ...-....++.+|+++.-..+|.+|...
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~-------~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIR-------MKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344445556777666655422333 56 888888888776311 0012234567889999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHH-HHHHH--------cCCHHHHHHHHHHH---HHhCCCCHH---------------------
Q 015907 181 YEETLSISPKDSTALEGAA-VTLAE--------LGDYTRAVSLLQDL---AKEKPSDPD--------------------- 227 (398)
Q Consensus 181 ~~~~l~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~~~~a---l~~~p~~~~--------------------- 227 (398)
+....+...-.--.|..++ -|+.+ .|+-+.|..+++.. +...|.+..
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 9988876543333344444 33322 23444444444332 222222110
Q ss_pred -----HHHHHHHHHHH--ccCHHHHHHHHHHHHh---h-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC
Q 015907 228 -----VFRLLGEVKYE--LKDYEGSAAAYRVSTM---V-SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 228 -----~~~~la~~~~~--~g~~~~A~~~~~~al~---~-~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 296 (398)
.++.++.++.. ....++.. -++..++ . +++...-.+..+|.++...|+...|..+|..+.+.......
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 11222222221 11122222 1111111 1 22211224567899999999999999999887643111100
Q ss_pred CchhhhccccccccccccccCCCchHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCC
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR-VSDAVAVYDRLISSYPN 352 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 352 (398)
..--+..+.+.+|..|...|. ..++..++.+|-+...+
T Consensus 485 ------------------d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 485 ------------------DLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred ------------------ccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 111234566779999999988 99999999999876533
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.73 E-value=41 Score=38.17 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHh---hCCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 242 YEGSAAAYRVSTM---VSKDI---NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 242 ~~~A~~~~~~al~---~~p~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
..+-+-.+++++- .+|+. -.+.|...|.+....|+++.|...+-.|.+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-------------------------- 1698 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE-------------------------- 1698 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh--------------------------
Confidence 4444445555432 23321 456899999999999999999999877733
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CC----------C------hHHHHHHHHHHHHcCCH--HHHHHH
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY-PN----------D------FRGYLAKGIILKENGKV--GDAERM 376 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~ 376 (398)
..+..+....|..+...|+...|+.++++.++.+ |+ . ..+.+.++......|++ .+-+.+
T Consensus 1699 -~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~ 1777 (2382)
T KOG0890|consen 1699 -SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKY 1777 (2382)
T ss_pred -cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 4466788889999999999999999999999653 22 1 12444555555566664 356778
Q ss_pred HHHHHhhCCCC
Q 015907 377 FIQARFFAPEK 387 (398)
Q Consensus 377 ~~~al~~~p~~ 387 (398)
|+.+.+..|..
T Consensus 1778 Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1778 YHDAKAILPEW 1788 (2382)
T ss_pred HHHHHHHcccc
Confidence 89999998843
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.40 E-value=4.6 Score=34.77 Aligned_cols=58 Identities=26% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
....+|..|+..|++++|+.+|+.+....... ..++..+..|+...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44566666666666666666666665432211 23444555666666666555554433
No 380
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.24 E-value=6.7 Score=33.46 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYE-LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+..+|.+..+.|+|++.+.++++++..+|.- .+=...+..+|-. .|....+...+.................+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 5678888889999999999999999887643 3344455555532 3445555555554444332200112222222221
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHH--HHHHHHh-----CC-----ChHHH
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELL--LGKAYSD-----GG-----RVSDA 339 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--la~~~~~-----~g-----~~~~A 339 (398)
.. =-++=......++.++... +... ..++. .+.++ .|..|.- .| -.+.|
T Consensus 84 ~k-ie~EL~~~C~eii~lId~~----------------Lip~-~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a 145 (236)
T PF00244_consen 84 KK-IEDELIDICNEIIRLIDKS----------------LIPS-ATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKA 145 (236)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHT----------------CHHH-S-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHH----------------Hhcc-ccchhHHHHHHHHhccccccccccccchhhHHHHHHH
Confidence 10 0011122222222222211 0000 01111 22222 5555522 12 13678
Q ss_pred HHHHHHHHH-----hCCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 015907 340 VAVYDRLIS-----SYPNDFR---GYLAKGIIL-KENGKVGDAERMFIQARF 382 (398)
Q Consensus 340 ~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 382 (398)
...|++|++ +.|.+|. ...+.+..| ..+|+.++|+...++++.
T Consensus 146 ~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 146 LEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888888876 4566653 445555555 458999999998888775
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.20 E-value=1.7 Score=37.59 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
+...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.++..|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777777778888888888777777776653
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.18 E-value=1.9 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.022 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+...+..|...|.+.+|+.+.++++.++|- +...+..+-.++...|+--.+...|++..+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 4445677888999999999999999999998 89999999999999999999999998876654
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.95 E-value=0.99 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
|+.+.+...|++++...|.++..|+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 456667777777777777777777654
No 384
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.85 E-value=4.2 Score=41.93 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=75.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAEL----G---DYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
..++.....|+.|+..|++.-...|... ++.+..|..+... | .+++|+..|+++- -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 3566777899999999999999998764 5777777766543 3 4667777776653 24555667888899
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+|..+|++++-+++|.-+++..|. .|.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 587 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQ-HPE 587 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999987 654
No 385
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.81 E-value=14 Score=31.83 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
...+|.-|...|++++|+.+|+.+....... ..+...+..|+...|+.++.+...-+.+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3449999999999999999999997654332 4577788999999999988877665443
No 386
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=0.87 Score=40.36 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
..+++.+-...+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++......
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~ 348 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEE 348 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHH
Confidence 33478888888999999888888888888888999999999999999999999999999999998765443
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.70 E-value=15 Score=31.84 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=51.7
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDPDVFRLLGEVKYELKDYE- 243 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~- 243 (398)
..++|++|++.+... +..+.+.|++..|.++..-.++. .+.+......++.+....+.-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 345666666655443 44455555555555554443332 1223333445555555443222
Q ss_pred HHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 244 GSAAAYRVSTMVS-----KDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 244 ~A~~~~~~al~~~-----p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
+-..+.+++++.. |..++..+..+|..+.+.|++.+|..+|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 2333334444332 3337888899999999999988888887
No 388
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.23 E-value=1.2 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 358 LAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+.++..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556666666666666666666663
No 389
>PF13041 PPR_2: PPR repeat family
Probab=88.00 E-value=3.4 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|..+...+.+.|++++|.++|+++.+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999999999999876
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.91 E-value=1.8 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
|+.+.|...|++++...|.++..|...+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999998877643
No 391
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=22 Score=35.68 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKD-STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
....+...|+-|+..-+.- ..+++. ..+....|.-++..|++++|...|-+.+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3445555566665554432 222222 33555666666777777777777766655
No 392
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.70 E-value=20 Score=31.98 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------------ccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVFRLLGEVKYE--------------------------LKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------------~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
++|+.+-.-++.+.|..++++-.++.+.+. .+-.+++...+.+++......-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 466666666666666666665555544433 122566777777777654320222
Q ss_pred HHHHHHHHHHH-----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChH
Q 015907 263 VLRGLTNALLA-----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVS 337 (398)
Q Consensus 263 ~~~~la~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 337 (398)
..-.++.++.. .-+|..-..+|.-... . ...| -+..+.+.......-.+
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~-~------------------------apSP-vV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQ-A------------------------APSP-VVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHH-h------------------------CCCC-eEeehHHHHHHHhhhHH
Confidence 33333333322 2234444444443322 1 2222 34445555555555666
Q ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 338 DAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 338 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++...+..... -.++...+-..|.++.++|+.++|...|++++.+.++..+.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 777776666553 22344566778888999999999999999999988877654
No 393
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=87.65 E-value=11 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++++.|++++.+ +.+++.|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 455555555543 234555555554443
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.36 E-value=27 Score=33.14 Aligned_cols=182 Identities=12% Similarity=-0.031 Sum_probs=113.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|-+...+..+-.++.+.-.++-....+.+++.... +..+++.++.+|... ..++-...+++..+.+-+ +...-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 344555666666677666677777788888888764 467889999999988 677788899999998877 77777788
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+..|.. ++-+.+..+|.+++...-...+ ...-.++|..+-. .--.+.+.-+....+.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q-------------------~~~i~evWeKL~~--~i~dD~D~fl~l~~kiq 196 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQ-------------------NAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQ 196 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhh-------------------hhhHHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 887776 8889999999988654321100 0000012211111 11122333222222222
Q ss_pred HhC-CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 348 SSY-PNDFR-GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 348 ~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+.. ..... ++..+-.-|....++.+|++.+...++.+..+..+.-++
T Consensus 197 t~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~ 245 (711)
T COG1747 197 TKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEI 245 (711)
T ss_pred HhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHH
Confidence 111 11112 222223445667889999999999999888877766543
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=11 Score=34.28 Aligned_cols=101 Identities=13% Similarity=0.013 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--CCHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSI-----SPKD-STALEGAAVTLAELGDYTRAVSLLQDLAKEK--P--SDPD 227 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~ 227 (398)
+..|+.+..++...|+...-...+...+.. +... ......+-+.|...+.|+.|..+..+..--. . ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 356777777777788766655555554432 1111 3345566778888889999988887765211 1 1244
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..+.+|.+..-+++|..|.++|-+++...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 5677888888899999999999999999886
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.51 E-value=1.8 Score=25.70 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
+.+|..|..+|+++.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.50 E-value=23 Score=32.45 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD--INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
.++..+|.-|...|+++.|++.|-++-..-.. .....+.++..+-...|+|.....+..++.......
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~---------- 220 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN---------- 220 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh----------
Confidence 35667788888888888888888875443222 023456667777777888877777776665432000
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH--------hCCCChHHHHHHHHHH-HHcCCHH---H
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS--------SYPNDFRGYLAKGIIL-KENGKVG---D 372 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~-~~~g~~~---~ 372 (398)
......-|......-|.+...+++|..|..+|-.+.- +.|.+..+|..+..+- +...++. .
T Consensus 221 -------~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi 293 (466)
T KOG0686|consen 221 -------ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVI 293 (466)
T ss_pred -------hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHH
Confidence 0001122333444566666677788888877765532 1233433333322111 1111111 1
Q ss_pred HHHHHHHHHhhCCCChHHHHHhhh
Q 015907 373 AERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 373 A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
.-..|+..+++.|.-.+.+...|+
T Consensus 294 ~n~~Fk~flel~Pqlr~il~~fy~ 317 (466)
T KOG0686|consen 294 KNESFKLFLELEPQLREILFKFYS 317 (466)
T ss_pred cchhhhhHHhcChHHHHHHHHHhh
Confidence 123466666777766665555554
No 398
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.45 E-value=23 Score=31.54 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHHhC-CCC
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL--------------------------GDYTRAVSLLQDLAKEK-PSD 225 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------------g~~~~A~~~~~~al~~~-p~~ 225 (398)
--++|+..-.-...+.|..++++-.++.++.+. +-.+++...+.+++... |.-
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP 290 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP 290 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence 346777777777788888888877776665433 33567888888888754 333
Q ss_pred HHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 226 PDVFRLLGEVKYE-----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 226 ~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
....-.++.++.. .-+|..-..+|.-...+.|+ +.+-.+.+.+.....-++.++...+.... .+
T Consensus 291 YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS--PvV~LNRAVAla~~~Gp~agLa~ve~L~~----~~----- 359 (415)
T COG4941 291 YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS--PVVTLNRAVALAMREGPAAGLAMVEALLA----RP----- 359 (415)
T ss_pred HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC--CeEeehHHHHHHHhhhHHhHHHHHHHhhc----cc-----
Confidence 2333334444433 23677778888888888886 66666677776666666667766544322 00
Q ss_pred hhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 301 VKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..+.. ..+...|..+.++|+.++|...|++++.+.++..+..+...
T Consensus 360 ---------------~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 360 ---------------RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ---------------ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 01111 23334899999999999999999999999988776555443
No 399
>PF12854 PPR_1: PPR repeat
Probab=86.34 E-value=2 Score=23.78 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQ 216 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~ 216 (398)
.|..+...|.+.|+.++|.++++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444443
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.11 E-value=19 Score=30.10 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
..+.+.+...+|+...+.-++..|.+......+-.++.-.|+|++|..-++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4556788999999999999999999999999999999999999999999999999998763
No 401
>PF12854 PPR_1: PPR repeat
Probab=85.95 E-value=2.5 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
...|..+...|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34555566666666666666665543
No 402
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.94 E-value=5.4 Score=38.56 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
..++.+.+++++|....++ .|+.-+++++-.|..+....++++|.+.|.++
T Consensus 780 VqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhheeecccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445556667766655544 34333446666677777777777777776555
No 403
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.88 E-value=17 Score=33.59 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST--ALEGA--AVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 221 (398)
...+...+..++|..|...|..+...-|.... .+..+ |..+...-++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567778899999999999999885344333 44444 44557788999999999998775
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.67 E-value=1.7 Score=39.93 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSIS---------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
...+..++.-.|+|..|++.++.. +++ +-....++..|-+|+.+++|.+|+..|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888777776642 111 22344677777777777788888777777664
No 405
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=85.60 E-value=25 Score=31.11 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--SPK--DSTALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|+...+++..+...++.|+|..|-.++--...+ +|+ ...++++.-..-.-+.+|+.|++-+.+.-+
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999999999999998876544433 332 344555444445566789999988877654
No 406
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.49 E-value=23 Score=32.50 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=42.5
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
....-+|+..++.++...|.+......+..+|..+|-...|...|..+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 455678899999999999999999999999999999999999999654
No 407
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.17 E-value=15 Score=28.02 Aligned_cols=143 Identities=11% Similarity=0.109 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHH--HHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 85 EERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVA--VVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 85 ~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A--~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
...|-.+.+....+..++..++..+.....|.....|.+ -.+ .+.| ..+++..-.++
T Consensus 3 ~kkLmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvI-CNi---iDaa~C~yvv~~LdsIG----------------- 61 (161)
T PF09205_consen 3 LKKLMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVI-CNI---IDAADCDYVVETLDSIG----------------- 61 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHH-HHH---HHH--HHHHHHHHHHHG-----------------
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHcCcCCccccceee-eec---chhhchhHHHHHHHHHh-----------------
Confidence 445666777777888888888888888777655555544 111 1211 11111111111
Q ss_pred HHHHHH--HHhccHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 163 NKELSE--EEKNVLQTRLKKYEETLSISPKDSTALEGAA-VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 163 ~la~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
..+ ...|+...-+.+|-..-. .. -+..+| ..+..+|+-++--+.+....+....++..+..+|.+|.+.
T Consensus 62 ---kiFDis~C~NlKrVi~C~~~~n~----~s-e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl 133 (161)
T PF09205_consen 62 ---KIFDISKCGNLKRVIECYAKRNK----LS-EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL 133 (161)
T ss_dssp ---GGS-GGG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT
T ss_pred ---hhcCchhhcchHHHHHHHHHhcc----hH-HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh
Confidence 111 123444444444443211 11 122233 3445666666666666666655555677777777778777
Q ss_pred cCHHHHHHHHHHHHhhC
Q 015907 240 KDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~ 256 (398)
|+..++-+.+.+|-+..
T Consensus 134 g~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 134 GNTREANELLKEACEKG 150 (161)
T ss_dssp T-HHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHhc
Confidence 87777777777776543
No 408
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.79 E-value=4.4 Score=33.59 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
.-+.+.+...+|+...+.-++-.|.+......+-.+|.-.|+|++|...++-+-.+.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34567788999999999999999999999999999999999999999999999999998643
No 409
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.68 E-value=49 Score=34.83 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=9.3
Q ss_pred HhccHHHHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEET 184 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~ 184 (398)
..++|+.|+.++.++
T Consensus 892 ~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSEC 906 (1265)
T ss_pred HHHHHHHHHHHHHHc
Confidence 456677776666554
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=84.36 E-value=16 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCC---CCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 246 AAAYRVSTMVSK---DINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 246 ~~~~~~al~~~p---~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
...|+..+.... + ..+.|.....-... .+.-..-..+++++...+...+. ...+
T Consensus 5 r~~~e~~i~~~~~~dD-PL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~------------------Y~nD 65 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDD-PLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDER------------------YKND 65 (126)
T ss_dssp HHHHHHHHHCCGGSS--CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGG------------------GTT-
T ss_pred HHHHHHHHHHccCCCC-ChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHh------------------hcCC
Confidence 445555555433 2 34555544433332 24556667788888887655422 2222
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
+..+..| ..|...-. ++..+|..+... .-..+..|...|..+...|++++|.+.|+.++
T Consensus 66 ~RylkiW--i~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 66 ERYLKIW--IKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHH--HHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2222222 23333222 888888888764 45568889999999999999999999999875
No 411
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.61 E-value=36 Score=31.27 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCCHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS-------KDINFE 262 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 262 (398)
.++..+|.-|...|+++.|+..|.++-.... .....+.++-.+-..+|+|.....+..++...- +...+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4788899999999999999999999654332 224567888888888999988888877776541 111223
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
....-|.+.+..++|..|..+|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455566666777999999998444
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.34 E-value=30 Score=34.89 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+...|.-++..|++++|...|-+.+..- |.. +. .-+....+..+-..+++.+.+..-.+.+--..|-.||.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--Vi----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi 442 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--VI----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--HH----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence 566677889999999999999999988643 221 11 11122233334444455555544344444445666777
Q ss_pred HccCHHHHHH
Q 015907 238 ELKDYEGSAA 247 (398)
Q Consensus 238 ~~g~~~~A~~ 247 (398)
++++.++-.+
T Consensus 443 Klkd~~kL~e 452 (933)
T KOG2114|consen 443 KLKDVEKLTE 452 (933)
T ss_pred HhcchHHHHH
Confidence 7666554433
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.85 E-value=35 Score=29.85 Aligned_cols=122 Identities=13% Similarity=-0.011 Sum_probs=79.0
Q ss_pred hccHHHHHHHHHHHHhc-CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSI-SPKD-----STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYE 238 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~ 238 (398)
....++-++-+.+.++. ..++ .++|.++|..|.+.++.+.+.+++.+.+...-. -.-.-..+|.+|..
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 33444445555444332 2222 579999999999999999999999888764321 12234567778877
Q ss_pred ccCHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDIN--FEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+.=..+.++.....++...+.. .......|.......++.+|-.++..++..+.
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7777888888888888765411 11222345555667788899888866654443
No 414
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.29 E-value=8.3 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
.+.....+......|++.-|.++...++..+|++..+....+.++..+|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444555555666677777777777777777777776666666666554
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.21 E-value=3 Score=38.37 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------H-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLA-------K-EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al-------~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
.+.+++..+|||..|++.++..- . .-+-...+++.+|.+|..+++|.+|++.|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666654321 1 012234455666666666666666666666654
No 416
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.79 E-value=14 Score=28.13 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=41.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
.++..+|+-++--..+.........++..+..+|.+|.+.|+..+|-+++.+|-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34567788887778888877656667999999999999999999999999998764
No 417
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.45 E-value=5.5 Score=30.77 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY 208 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 208 (398)
.......+...+..|++.-|..+.+.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345667788888999999999999999999999999999999988776643
No 418
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=80.44 E-value=21 Score=27.72 Aligned_cols=32 Identities=9% Similarity=0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHhcCCCCHH
Q 015907 162 VNKELSEEEKN-VLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 162 ~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~ 193 (398)
..+|..+...| +..++..+|-+++...|+-.+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 45777778888 888888888888888776443
No 419
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.33 E-value=39 Score=32.82 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.+.|+++.|.++..++ ++..-|..||.+....+++..|.++|.++
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555555544332 33445556666666666666666666555
No 420
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=80.08 E-value=0.55 Score=45.37 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHH--
Q 015907 179 KKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLA--KEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVS-- 252 (398)
Q Consensus 179 ~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a-- 252 (398)
.++.++-...+. ....+..-+..+...|++..|...+.++- .+.|. ........+.+....|+++.|+..+...
T Consensus 10 ~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~ 89 (536)
T PF04348_consen 10 QYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDL 89 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc
Confidence 333444333332 23345556688889999999998888766 23332 2345566678888889999999988741
Q ss_pred HhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 253 TMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 253 l~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
..+.+......+...+.++...|++-+|...+-.....+
T Consensus 90 ~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL 128 (536)
T PF04348_consen 90 WQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPLL 128 (536)
T ss_dssp ---------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 122222133455667888888888888887765544433
No 421
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.03 E-value=3.3 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.444 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~a 218 (398)
+-..|.+.|++++|...+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 333444444444444444433
No 422
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=3.1 Score=37.02 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=82.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-----------CC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSIS-----------PK--------DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~-----------p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
.+...+..+++..|..-|.+++..- ++ -.....+++.+-...+.+..|+.....++..++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 4455778888888888888776531 11 0124556778888889999999888888888888
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
...+++..+..+....++++|++.++.+....|. +......+..+-
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~-d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN-DKAIEEELENVR 353 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc-hHHHHHHHHHhh
Confidence 8889999999999999999999999999999998 766555544443
No 423
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.09 E-value=77 Score=32.10 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=78.9
Q ss_pred hcCCCchhhhhhhcchhhc----HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH---HHHHhccHHHHHHHHHHH
Q 015907 112 YDAPIETEKKTIGLGTKIG----VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL---SEEEKNVLQTRLKKYEET 184 (398)
Q Consensus 112 ~~~p~~~~~~~~~lg~~~g----~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~---~~~~~g~~~~A~~~~~~~ 184 (398)
...+-....+.+++....| +..|...+..+. |..+..|..-.. .....++-.++...|+++
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~------------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~eka 176 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA------------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKA 176 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 3344444444444444455 556666666655 666666654432 222347778888999998
Q ss_pred HhcCCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 185 LSISPKDSTALEGAAVTL-------AELGDYTRAVSLLQDLAKEKPS-------DPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
+.-. +.+..|...+..+ ...++++.-...|.+++..-.. ....+..+-..|...-..++.+.++.
T Consensus 177 l~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 177 LGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred hccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8743 4555555554443 4456788888888888874321 12344555556666556677788888
Q ss_pred HHHhhC
Q 015907 251 VSTMVS 256 (398)
Q Consensus 251 ~al~~~ 256 (398)
..+...
T Consensus 256 ~el~~~ 261 (881)
T KOG0128|consen 256 RELKQP 261 (881)
T ss_pred HHHhcc
Confidence 777654
No 424
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=78.71 E-value=49 Score=29.68 Aligned_cols=164 Identities=13% Similarity=0.081 Sum_probs=101.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC--HHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSI----S--PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-----PSD--PDVF 229 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~~ 229 (398)
.+...|+..++|.+|+......+.. + +.-.++...-..+|....+..+|...+..+-... |.. ...-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4678899999999999888776542 2 1224566666788888999999988887765432 211 1122
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHH---HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 230 RLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEV---LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 230 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
..-|..+..-.+|.-|..+|-.+++-.... +..+ +..+-.+-...+..++.-..+..= ..
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K-~~-------------- 277 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAK-LA-------------- 277 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhH-HH--------------
Confidence 333566666789999999999998753221 2333 333444445666666655544221 11
Q ss_pred ccccccccccccCCCc--hHHHHHHHHHHh--CCChHHHHHHHHHHHHhCC
Q 015907 305 RSGDKKETEPQKVDPI--QVELLLGKAYSD--GGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 351 (398)
+..... ++.-.++.++.+ +.+++.|+.-|..-+..+|
T Consensus 278 ----------l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 278 ----------LKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred ----------HhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 111122 344446666644 3678888888887776555
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.18 E-value=3.9 Score=21.41 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
|..+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666665543
No 426
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.15 E-value=20 Score=35.51 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCC
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVTLA---ELGDYTRAVSLLQDLAKEK-PSD 225 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~ 225 (398)
-++....++-..|....+|+.-++..+..-. -|+.. .+.+.++.++- .-|+-++|+...-.+++.. |-.
T Consensus 199 L~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred cCHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 3456777888888889999888877766433 35332 22333344443 3478899999888888754 444
Q ss_pred HHHHHHHHHHHHH---------ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 226 PDVFRLLGEVKYE---------LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 226 ~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
++.+..-|.+|.. .+..+.|+++|+++++..|. ...=.+++.++...|+
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~--~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL--EYSGINLATLLRAAGE 335 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch--hhccccHHHHHHHhhh
Confidence 5666666777654 45678899999999999986 4445667777766664
No 427
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=77.55 E-value=37 Score=27.55 Aligned_cols=185 Identities=11% Similarity=0.026 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHHHHH-hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 155 PTEEAGVVNKELSEEE-KNVLQTRLKKYEETLSISPKDSTALEGAAVTLA-----ELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 155 p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
...|+.-..+|..+.. ..+|++|...|..--..+ ..+...+.+|..+. ..++...|+..+..+-. .+.+.+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~a 107 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQA 107 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHH
Confidence 3445555666654433 456777777766554433 23445555555443 23567778888877765 345677
Q ss_pred HHHHHHHHHHc-----c--CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 229 FRLLGEVKYEL-----K--DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 229 ~~~la~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
...+|.++..- + +..+|++++.++-.+. +..+.+.|...|+.-.+ + +
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~---~~~aCf~LS~m~~~g~~--k----~----------------- 161 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE---DGEACFLLSTMYMGGKE--K----F----------------- 161 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC---CchHHHHHHHHHhccch--h----h-----------------
Confidence 77777776542 2 2667788888776654 66777667666554321 1 1
Q ss_pred hccccccccccccccCCCchH-HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHH
Q 015907 302 KDGRSGDKKETEPQKVDPIQV-ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN----GKVGDAERM 376 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~ 376 (398)
....|... -...+..+.-..+.+.|..+--++-++. .+.+..++.+.|..- .+.++|..+
T Consensus 162 -------------~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aeky 226 (248)
T KOG4014|consen 162 -------------KTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKY 226 (248)
T ss_pred -------------cccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHH
Confidence 01111111 1113444555678888988888887643 567777777777532 246778877
Q ss_pred HHHHHhh
Q 015907 377 FIQARFF 383 (398)
Q Consensus 377 ~~~al~~ 383 (398)
-.+|.++
T Consensus 227 k~rA~e~ 233 (248)
T KOG4014|consen 227 KDRAKEI 233 (248)
T ss_pred HHHHHHH
Confidence 7777765
No 428
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=77.15 E-value=88 Score=31.72 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=130.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTL---AELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
+.....+..+..++...|++++-...-.++.++.|..+..|.....-. ...++-.++...|++++... ..+..|..
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw~e 188 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIWEE 188 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHHHH
Confidence 666667778888889999999888888888888898888887666433 23467778888899988643 33444444
Q ss_pred HHH-------HHHHccCHHHHHHHHHHHHhhCCC------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc
Q 015907 232 LGE-------VKYELKDYEGSAAAYRVSTMVSKD------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 232 la~-------~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
.+. ++...++++.-...|.+++..-.. .....+..+-..|...-..++-+.++...+..- ..
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D---- 263 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LD---- 263 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-ch----
Confidence 443 334456788888889888864321 012334445555555444466666665543311 00
Q ss_pred hhhhccccccccccccccCCC-chHHHHHH--HH-HHhCCChHHHHHH-------HHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 299 LSVKDGRSGDKKETEPQKVDP-IQVELLLG--KA-YSDGGRVSDAVAV-------YDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~la--~~-~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
.+. ..-+.+.. .. .....+++.|..- +.+.+...|.....|..+-......
T Consensus 264 ------------------~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~ 325 (881)
T KOG0128|consen 264 ------------------EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKS 325 (881)
T ss_pred ------------------hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 000 00111111 11 1223344444433 3344444555556777777778888
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
|..-.-...+++++.-.+.+...|+.
T Consensus 326 G~p~ri~l~~eR~~~E~~~~~~~wi~ 351 (881)
T KOG0128|consen 326 GDPVRIQLIEERAVAEMVLDRALWIG 351 (881)
T ss_pred CCchHHHHHHHHHHHhccccHHHHhh
Confidence 88877777888888877877777765
No 429
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.96 E-value=50 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.+..-|.+.+.+|+-++|.++++.+...+.
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~~l~ 298 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHAKLL 298 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345568888999999999999988866543
No 430
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.00 E-value=1e+02 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 354 FRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 354 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
...|...+.++.++|+.++|+..|-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45788889999999999999998877664
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.55 E-value=14 Score=30.32 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.+..++..++.+...| ++..+..++.++...|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455566677777777 6788999999999999999999999999999994
No 432
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=75.32 E-value=7.8 Score=20.73 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLA 219 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al 219 (398)
..+-..|.+.|++++|..+|.++.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444455555555555555443
No 433
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.14 E-value=49 Score=26.88 Aligned_cols=173 Identities=13% Similarity=-0.009 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH-----HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE-----EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAEL 205 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 205 (398)
++.-..-|+.+..+-.+.-.. ...+..-+.+|.-+. ..+++..|++.|..+-. .+.+.+...+|.++..-
T Consensus 44 lEgi~knF~~A~kv~K~nCde---n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g 118 (248)
T KOG4014|consen 44 LEGIQKNFQAAVKVFKKNCDE---NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNG 118 (248)
T ss_pred HHHHHHHHHHHHHHHHhcccc---cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccC
Confidence 444455677766554222222 344455566665443 24678999999998877 45788888888887643
Q ss_pred -----CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHcCCc
Q 015907 206 -----GD--YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLAAKKP 277 (398)
Q Consensus 206 -----g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~~~~~ 277 (398)
++ ..+|..++.++-.+. +..+.+.|...|+.-. ++ +....|. ..+. ..+..+....+.
T Consensus 119 ~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~~~~~~~~kDM 184 (248)
T KOG4014|consen 119 EKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DRAELGSLSKDM 184 (248)
T ss_pred cCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---chhhhhhhhHhH
Confidence 33 678999999987764 4566666766665432 22 2222331 0121 233444556778
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC----CChHHHHHHHHHHHHh
Q 015907 278 DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG----GRVSDAVAVYDRLISS 349 (398)
Q Consensus 278 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 349 (398)
+.|.++-.++- ..+...+..++.+.|..- ++-++|..+-.++.++
T Consensus 185 dka~qfa~kAC---------------------------el~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 185 DKALQFAIKAC---------------------------ELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHH---------------------------hcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 88888876663 344445556677777443 3566777777666654
No 434
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.33 E-value=82 Score=29.15 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHH--HHHHHccCHHHHHHHHHHHHhh
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD--VFRLLG--EVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~la--~~~~~~g~~~~A~~~~~~al~~ 255 (398)
...+.-++..++|..|...+..+...-|.... .+..+. ..+...-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45566778899999999999999986344333 444444 4445677899999999998765
No 435
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.51 E-value=14 Score=19.78 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|..+..++.+.|+++.|..+++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 436
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.03 E-value=64 Score=27.35 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=17.9
Q ss_pred hCCChHHHHHHHHHHHHhCCCC
Q 015907 332 DGGRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~ 353 (398)
..++...|+.++++++.++|+.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 4467788999999999988875
No 437
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=70.95 E-value=4.2 Score=37.67 Aligned_cols=34 Identities=29% Similarity=0.247 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCC
Q 015907 82 INFEERLAAVRRSALEQKKAEEIKEFGPIDYDAP 115 (398)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p 115 (398)
..+.++|+...+....+++.+|+..|+.++..-|
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~ 235 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIP 235 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 3456788889999999999999999999876533
No 438
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=70.87 E-value=94 Score=29.19 Aligned_cols=96 Identities=15% Similarity=-0.023 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCH-------HHHHHHHHHHHhh-----
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYELKDY-------EGSAAAYRVSTMV----- 255 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~-------~~A~~~~~~al~~----- 255 (398)
....+|..++.+|+|+-|...|+.+.+-...+. .+.-..|.++...+.. ++...+++.++..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 456789999999999999999998877543221 1233344444444422 2333444443321
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 256 -----SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 256 -----~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.|.....+....+.++...+.+.+|...+-++..
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~ 328 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTS 328 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1111344556677777888888887777655433
No 439
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.76 E-value=10 Score=25.58 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 015907 205 LGDYTRAVSLLQDLAK 220 (398)
Q Consensus 205 ~g~~~~A~~~~~~al~ 220 (398)
.|+|++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4566666666666554
No 440
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.54 E-value=46 Score=28.94 Aligned_cols=160 Identities=10% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh----------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK----------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~----------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
..|++.-..++..+|.....+.....++ .- ++.-..+...++.-. |...+.|...-.++.
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~---------PK~YqiW~HR~~~Le 119 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDN---------PKNYQIWHHRQWMLE 119 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcC---------CchhhhhHHHHHHHH
Q ss_pred Hh--ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHH
Q 015907 170 EK--NVLQTRLKKYEETLSISPKDSTALEGAAVTL------AELGDYTRAVSLLQDLAKEKPSDPDVFRLL---GEVKYE 238 (398)
Q Consensus 170 ~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~ 238 (398)
.- ..+..-....++.++.+|.+..+|...-.+. ..-.++.+-.++-..++..++.+..+|... -...+.
T Consensus 120 ~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~ 199 (328)
T COG5536 120 LFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFN 199 (328)
T ss_pred hCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh
Q ss_pred ccC------HHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 239 LKD------YEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 239 ~g~------~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
.|+ +++-+++.-.++-.+|+ +..+|..+-.+
T Consensus 200 ~~~visqk~l~~eL~~i~~~if~~p~-~~S~w~y~r~~ 236 (328)
T COG5536 200 RGDVISQKYLEKELEYIFDKIFTDPD-NQSVWGYLRGV 236 (328)
T ss_pred hcccchHHHHHHHHHHHHhhhhcCcc-ccchhhHHHHH
No 441
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=70.07 E-value=69 Score=27.34 Aligned_cols=165 Identities=9% Similarity=0.027 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKD-STALEGAAVTLA-ELGDYTRAVSLLQDLAKEKPSDP-DVFRLLGEVKY 237 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 237 (398)
+..++.+..+.|+|++.+.+..+++..+|+- .+-...+..+|. ..|....+...+........... .....+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 5678899999999999999999999997764 334455555553 23445555555555444332220 11111111111
Q ss_pred Hc------cCHHHHHHHHHHHHhhCCCCCHH----HHHHHHHHHHH-----cC-----CchHHHHHHHHHHHHhcCCCCC
Q 015907 238 EL------KDYEGSAAAYRVSTMVSKDINFE----VLRGLTNALLA-----AK-----KPDEAVQFLLASRERLSTGKSD 297 (398)
Q Consensus 238 ~~------g~~~~A~~~~~~al~~~p~~~~~----~~~~la~~~~~-----~~-----~~~~A~~~~~~a~~~~~~~~~~ 297 (398)
.. .--.+.+......+--... +.+ .+...|..|.- .| -.+.|...|++|.......
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~-~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~--- 159 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSAT-SPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKE--- 159 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS--SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcc---
Confidence 10 0112233333332221211 222 22334555432 11 1367888888888765532
Q ss_pred chhhhccccccccccccccCCCchHH-----HHHHHH-HHhCCChHHHHHHHHHHHH
Q 015907 298 DLSVKDGRSGDKKETEPQKVDPIQVE-----LLLGKA-YSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~la~~-~~~~g~~~~A~~~~~~al~ 348 (398)
..|.++. ++.+.. |...|+.++|+...++++.
T Consensus 160 -------------------L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 160 -------------------LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp -------------------SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred -------------------cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3343322 223433 4668999999998888875
No 442
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=69.93 E-value=76 Score=27.79 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=72.9
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH---HHcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPK--DSTALEGAAVTL---AELGD----YTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~---~~~g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
..+...++|++=...|.+......+ ..+..+..+... ..... ...-...++.-++..|+...++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4556778888888888777654322 111112222111 11111 12456777888888999988888888777
Q ss_pred HHcc----------------------CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 237 YELK----------------------DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 237 ~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
.... -.+.|...+.+++.++|. ...+...+..+-...|.++
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr-~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPR-PVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHhhcCCch
Confidence 6421 156788889999999999 7888877777777777664
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.92 E-value=20 Score=29.43 Aligned_cols=43 Identities=23% Similarity=0.130 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.++..++.+...|+ +.++..++.++...|+.++|..+..++..
T Consensus 130 ~~~~a~~~l~~~P~--~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 130 YIEWAERLLRRRPD--PNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555553 55556666666666666666666655544
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.44 E-value=1e+02 Score=27.60 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC--HHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKP------SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN--FEV 263 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~ 263 (398)
.+++...|..|.+.||-+.|.+.+.+..+..- +-.-....+|..|....-..+.++-.+..++...+.+ ...
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 56899999999999999999999988766431 1122345667777666555666666666666554411 112
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
...-|.......++.+|-.+|..++..+..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 222344556677889999998666554443
No 445
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.42 E-value=88 Score=26.84 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHh-----CCCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 015907 336 VSDAVAVYDRLISS-----YPNDFR---GYLAKGIIL-KENGKVGDAERMFIQARF 382 (398)
Q Consensus 336 ~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~ 382 (398)
.+.|...|+.|+++ .|.+|- ..++.+..| ..+++.++|+...++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45888999988864 455543 334444444 456999999877777664
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.29 E-value=16 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHhc
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSI 187 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~ 187 (398)
|...-..|++++|+.+|..+++.
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHH
Confidence 33344789999999999998874
No 447
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.04 E-value=38 Score=25.38 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSI 187 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 187 (398)
+..+|......+++-.++-+|++++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 455677777777777788777777654
No 448
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.03 E-value=1.6e+02 Score=31.42 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=27.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
|+.-+..++++-+|-.+....+. +|...- .+|.+...|++|+.....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s-d~~~av------~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS-DPEEAV------ALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc-CHHHHH------HHHhhHhHHHHHHHHHHh
Confidence 67777788888888777776664 332222 233344456666655443
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.60 E-value=96 Score=26.95 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHHcCCch
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-----SKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
..++|++|++++... +..+.+.|++..|.+...-.++. .+. +......++.++.....-+
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~-~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQYGSGADLALLLIEVYEKSEDPV-DEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCCc
Confidence 467888888876554 33344444444444433322222 122 3444455666665554322
Q ss_pred -HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH-----------
Q 015907 279 -EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL----------- 346 (398)
Q Consensus 279 -~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------- 346 (398)
+-..+..++++..... . ......+.+..+|..|.+.|++.+|..+|-..
T Consensus 67 p~r~~fi~~ai~WS~~~-~------------------~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~l 127 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFG-S------------------YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVML 127 (260)
T ss_dssp TTHHHHHHHHHHHHHTS-S-------------------TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHccC-C------------------CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHH
Confidence 3344445555543111 0 11122245555999999999999888775221
Q ss_pred -----HHhCCCChHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Q 015907 347 -----ISSYPNDFRGYLAKGI-ILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 347 -----l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 383 (398)
....|...+.+...+. .|...++...|...+..-.+.
T Consensus 128 l~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 128 LEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1234556666655554 457779999998877666654
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.27 E-value=15 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
+...|..+-..|++++|+.+|.+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555578888888888877654
No 451
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=45 Score=32.38 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
++-+...+.+++|++.++.. -.+ .+..+.|+++.|.+...++ + +..-|..||.+....+++..|.++|.+
T Consensus 622 ~Fle~~g~~e~AL~~s~D~d-~rF---elal~lgrl~iA~~la~e~-----~-s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTDPD-QRF---ELALKLGRLDIAFDLAVEA-----N-SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHhhhccchHhhhhcCCChh-hhh---hhhhhcCcHHHHHHHHHhh-----c-chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 34455555666666655432 222 3344566666665554433 2 455677777777777777777777766
Q ss_pred H
Q 015907 287 S 287 (398)
Q Consensus 287 a 287 (398)
+
T Consensus 692 a 692 (794)
T KOG0276|consen 692 A 692 (794)
T ss_pred h
Confidence 5
No 452
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.17 E-value=39 Score=24.69 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=19.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 199 AVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 199 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
|.+....||+..|.+...++-+..+..+-.+..-+..-..+|
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 333445566666666666655443333333333334444433
No 453
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.25 E-value=16 Score=24.79 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHh
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
...|.-+-..|+|++|+.+|..+++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344445578889999888888765
No 454
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=61.81 E-value=28 Score=31.90 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=5.2
Q ss_pred CCCCCCCccccchhhcccc
Q 015907 26 RRGFGNKTDKTNKEEKKGV 44 (398)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (398)
+|.-|-+..++.||.++..
T Consensus 3 KRpLGLgkaak~KKqK~~~ 21 (404)
T PF12753_consen 3 KRPLGLGKAAKAKKQKKES 21 (404)
T ss_dssp ----------HHHHHHHHH
T ss_pred CccccchhhHHHhccCccc
Confidence 6766666676666655543
No 455
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.21 E-value=22 Score=19.44 Aligned_cols=26 Identities=8% Similarity=0.224 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 241 DYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
+++.|...|++.+...|+ +..|...|
T Consensus 2 E~dRAR~IyeR~v~~hp~--~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE--VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC--chHHHHHH
Confidence 456667777777766654 55555444
No 456
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.16 E-value=64 Score=24.24 Aligned_cols=27 Identities=15% Similarity=-0.108 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
+..+|....+.+++-.++-.|++++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 345666777777777777777777654
No 457
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.50 E-value=73 Score=24.24 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=48.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
+...+.....+.+++.++..++.++.....+..+|... +..+.++.++. ..+..+ .-..+.++.+.+-++++.-
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHHH
Confidence 34457888999999999988887788888888888764 44555566552 111111 1123444455566666666
Q ss_pred HHHH
Q 015907 248 AYRV 251 (398)
Q Consensus 248 ~~~~ 251 (398)
.+.+
T Consensus 91 l~~k 94 (140)
T smart00299 91 LYKK 94 (140)
T ss_pred HHHh
Confidence 6654
No 458
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.36 E-value=2.5e+02 Score=30.05 Aligned_cols=117 Identities=13% Similarity=0.046 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------------------------CH----HHHHHHHHHHHHcCCH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPK-------------------------DS----TALEGAAVTLAELGDY 208 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------------------~~----~~~~~la~~~~~~g~~ 208 (398)
+...+.+|.+|...|+..+|+.+|.++..-... .+ ..|...-+++...+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 445677888899999999999999988653211 11 1122233455556667
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCch
Q 015907 209 TRAVSLLQDLAKEKPSD----PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI--NFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~la~~~~~~~~~~ 278 (398)
+.++.+..+|++.-|++ +.....+-.-+..+|.+-+|...+ -.+|+. .-..+..+..++++.|+++
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 77777777777654432 223333344445566666654432 234441 1235566677777776653
No 459
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.16 E-value=20 Score=24.32 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=16.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHh
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
...|..+-..|++++|+.+|.++++
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445577888888877776654
No 460
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.70 E-value=50 Score=33.04 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLAE--LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
+..++..+++..+.--|..++.+-|.+ .....+.+.+++. .|+|..++.-..-++...|....+++..+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 444555556666555555555554422 2233444444433 3566666666666666666666666666666666
Q ss_pred ccCHHHHHHHHHHHHhhCCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~ 258 (398)
.+.++-|++...-.....|.
T Consensus 140 l~k~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPS 159 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 66666666665555555555
No 461
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=57.75 E-value=1.1e+02 Score=25.33 Aligned_cols=115 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAA-VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+...+..+-......|+++.|-.+|--.+...+-+......+| .++...+.-....++++......|............
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~ 119 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRR 119 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhh
Q ss_pred ------------------------HHHccC--------HHHHHHHHHHHHhhCC--CCCHHHHHHHHHHHH
Q 015907 236 ------------------------KYELKD--------YEGSAAAYRVSTMVSK--DINFEVLRGLTNALL 272 (398)
Q Consensus 236 ------------------------~~~~g~--------~~~A~~~~~~al~~~p--~~~~~~~~~la~~~~ 272 (398)
+.-..+ +++.++-....+-.-| + +++.|+..|.++.
T Consensus 120 ~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d-~~el~~i~~m~~L 189 (199)
T PF04090_consen 120 IIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMD-DGELWFIRGMCHL 189 (199)
T ss_pred cccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHHHHH
No 462
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=57.45 E-value=22 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhCCCChH
Q 015907 372 DAERMFIQARFFAPEKVK 389 (398)
Q Consensus 372 ~A~~~~~~al~~~p~~~~ 389 (398)
+|++.+.+++...||++.
T Consensus 31 ~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHhCCChHH
Confidence 334444444555666543
No 463
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=56.97 E-value=1.9e+02 Score=27.92 Aligned_cols=106 Identities=16% Similarity=0.065 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 178 LKKYEETLSISPKDSTALEGA-AVTLAELGDYTRAVSLLQDLA-KEKPSD-PDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al-~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
..++.++-...++...-|..+ +.++.+.|+...|..++.++- .+.|.. .+.-...+.+.....++..|...+.+...
T Consensus 48 ~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~ 127 (604)
T COG3107 48 QFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP 127 (604)
T ss_pred HHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch
Confidence 344455555555554455444 478999999999999999876 344332 23445567888889999999999987654
Q ss_pred hCCCCCHH--HHHHHHHHHHHcCCchHHHHH
Q 015907 255 VSKDINFE--VLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 255 ~~p~~~~~--~~~~la~~~~~~~~~~~A~~~ 283 (398)
..-..... .|...+.+....|+.=+|.+.
T Consensus 128 ~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~ra 158 (604)
T COG3107 128 ADLSQNQQARYYQARADALEARGDSIDAARA 158 (604)
T ss_pred hhcCHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 33221223 444455555555544444443
No 464
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=56.83 E-value=1.5e+02 Score=26.52 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----HhhCCCCCHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS----TMVSKDINFEV 263 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~ 263 (398)
-|-..+....+-..+ ..+++.+.++..++.+..+|--.+.++..+.++..+| ++.+....... +..-|.
T Consensus 96 ~~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~----- 168 (301)
T TIGR03362 96 APPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPG----- 168 (301)
T ss_pred CCCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcC-----
Confidence 344455555555554 6788899999999999998888888888999999999 45555444433 333444
Q ss_pred HHHHHHHHHHcCCc---hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC-chHH--HHHHHHHHhCCChH
Q 015907 264 LRGLTNALLAAKKP---DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP-IQVE--LLLGKAYSDGGRVS 337 (398)
Q Consensus 264 ~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~la~~~~~~g~~~ 337 (398)
|-.+.+.-|-+ ++...++...... ..... -........ .++. ..-+......+..+
T Consensus 169 ---L~~L~F~DGtPFad~~T~~WL~~~~~~-~~~~~--------------~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~ 230 (301)
T TIGR03362 169 ---LLELKFSDGTPFADDETRAWLAQHATR-SNAAS--------------VAPVAEVGEESDWEELREEARALAAEGGLE 230 (301)
T ss_pred ---hhhcccCCCCCCCCHHHHHHHHhcccc-ccccc--------------ccccccCcccccHHHHHHHHHHHHHcCCHH
Confidence 34444455542 4455554332110 00000 000000010 1111 12467778899999
Q ss_pred HHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 338 DAVAVYDRLISSYPND---FRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 338 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
+|+..++..+...+.. ....+.++.++...|.++-|..+|+...+.
T Consensus 231 ~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 231 AALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999865533322 445677899999999999999999887754
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.74 E-value=53 Score=33.49 Aligned_cols=122 Identities=20% Similarity=0.252 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHH------HhccCCCCCCCCCCC
Q 015907 83 NFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLV------FALGDFLPSGSVSPT 156 (398)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a------~~~~~~~~~~~~~p~ 156 (398)
+..++++...+....+++.+|++.|+.++..-|-....... ...+|.++.... +... .....
T Consensus 990 ~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~------e~aea~~li~i~~eYi~gL~~E--~~Rr~---- 1057 (1202)
T KOG0292|consen 990 QLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKE------EEAEADELIKICREYIVGLSVE--LERRK---- 1057 (1202)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchh------hHHHHHHHHHHHHHHHhhheee--eeecc----
Confidence 35678888888889999999999999988766521111000 012222222111 1111 00000
Q ss_pred hHHHHHHHHHHHHHhccHHHH--HHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTR--LKKYEETLSISPKDS-TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A--~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
...+..+++ +..|-.-..+.|.+. .++...-.++.+.+++..|..+..+++++.|..+.+
T Consensus 1058 ------------l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1058 ------------LKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred ------------cCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 011122222 223333344455443 344444467788888888888888888888876554
No 466
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.25 E-value=75 Score=31.06 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 217 (398)
.......+..+..+-..+..++|-.+|++.+..+|+ +.++..+.-+...|-...|...+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 344555666777788889999999999999999988 6888889999999999999888873
No 467
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.05 E-value=1.4e+02 Score=26.15 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCC-----H-----H---HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKD-----S-----T---ALEGAA-VTLAELGDYTRAVSLLQDLAKEKPSD-P 226 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~-----~---~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~-~ 226 (398)
-..+..+.-..||..|+...+++++.-..+ + + .+..+| .++.++++|.+++.+.-+-...-.+- +
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 344566677789999999999988753111 1 1 122233 56788899999888877766543333 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHHHHHHHH-----HHHHHcCCchHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFEVLRGLT-----NALLAAKKPDEAVQFL 284 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~la-----~~~~~~~~~~~A~~~~ 284 (398)
.+.-.-...|.+.+++....+.-..-+. +|+ ....-+..++ +++.=.|.+++|.++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4444445667788888877777766665 333 1222244444 4445678888888876
No 468
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.98 E-value=1e+02 Score=27.54 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--C--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISP--K--D----STALEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDV 228 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 228 (398)
.....++.+|...++|..|...+.-. .++. . + ...+..+|.+|...++..+|..+..++-= .+..+...
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 34556677777777777776666532 2221 0 0 22456677777777777777777666422 22234433
Q ss_pred HHH----HHHHHHHccCHHHHHHHHHHHHhh
Q 015907 229 FRL----LGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 229 ~~~----la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
... .|.++-..++|-+|...|-+....
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 234444455666666666555444
No 469
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=55.90 E-value=31 Score=18.58 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 015907 356 GYLAKGIILKEN----GKVGDAERMFIQARF 382 (398)
Q Consensus 356 ~~~~la~~~~~~----g~~~~A~~~~~~al~ 382 (398)
+.+.+|.+|..- .+..+|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344555555422 255666666666544
No 470
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.61 E-value=1.5e+02 Score=29.88 Aligned_cols=70 Identities=7% Similarity=-0.037 Sum_probs=49.4
Q ss_pred hccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 171 KNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAE---------LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
-|+-++|+...-.+++.. |-.++.+...|++|.. .+..+.|+++|+++.+..|... .-.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 478888888887777754 4456677777777753 3667899999999999998642 3345566666555
Q ss_pred C
Q 015907 241 D 241 (398)
Q Consensus 241 ~ 241 (398)
+
T Consensus 335 ~ 335 (1226)
T KOG4279|consen 335 E 335 (1226)
T ss_pred h
Confidence 3
No 471
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.96 E-value=1.4e+02 Score=29.31 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=63.5
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
.+....+.+....+.-+.............+..+-..+..++|-.+|++++..+|+ ..++..+.-+...|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34555666776777666555555667777888899999999999999999999998 6777888888888888888877
Q ss_pred HH
Q 015907 249 YR 250 (398)
Q Consensus 249 ~~ 250 (398)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 77
No 472
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.79 E-value=1.5e+02 Score=26.03 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhC--------CC-CCHHHHHH---H-HHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVS--------KD-INFEVLRG---L-TNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~~~---l-a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
+..+.-..||..|++..++.++.- |. ...++... + ..++..++++.+++.+..+..+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~--------- 112 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV--------- 112 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---------
Confidence 344444555666666666655431 10 01122222 2 24567899999999987554321
Q ss_pred hhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh--HHHH-----HHHHHHHHcCCHHH
Q 015907 300 SVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF--RGYL-----AKGIILKENGKVGD 372 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~-----~la~~~~~~g~~~~ 372 (398)
-+.-|..+.-.-...|.+.+++....+.-..-+. +|+|. .-|. .+-.++.=+|.+++
T Consensus 113 ---------------pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~e 176 (309)
T PF07163_consen 113 ---------------PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSE 176 (309)
T ss_pred ---------------cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHH
Confidence 1333555555556678888999988888887776 55542 2233 34445556799999
Q ss_pred HHHHHH
Q 015907 373 AERMFI 378 (398)
Q Consensus 373 A~~~~~ 378 (398)
|.++..
T Consensus 177 Aeelv~ 182 (309)
T PF07163_consen 177 AEELVV 182 (309)
T ss_pred HHHHHh
Confidence 988764
No 473
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.47 E-value=1.6e+02 Score=26.27 Aligned_cols=147 Identities=21% Similarity=0.219 Sum_probs=89.4
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHccC---H
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDL----AKEKPSDPDVFRLLGEVKYELKD---Y 242 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~la~~~~~~g~---~ 242 (398)
..+++.+.++..++.+..+|--.+..+..+.++.++| ++.+....... ++.-|.-... .+.-|- -
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L-------~F~DGtPFad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL-------KFSDGTPFAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc-------ccCCCCCCCC
Confidence 6678899999999999999988999999999999999 45555554443 3334432111 111110 0
Q ss_pred HHHHHHHHHHHh-----------hCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 243 EGSAAAYRVSTM-----------VSKD-INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 243 ~~A~~~~~~al~-----------~~p~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
++....+..-.. ..+. .+......-+..+...+..+.|+..++....
T Consensus 183 ~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~--------------------- 241 (301)
T TIGR03362 183 DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLA--------------------- 241 (301)
T ss_pred HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcc---------------------
Confidence 011111111000 0110 0122233446777888999999999876422
Q ss_pred ccccccCCCchHHH---HHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 311 ETEPQKVDPIQVEL---LLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 311 ~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
....|.+-++ .++.++...|.++-|...|+.+.+.
T Consensus 242 ----~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 242 ----QAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred ----cCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1123333333 3999999999999999999988763
No 474
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=54.47 E-value=29 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 015907 164 KELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
.|...-..|++++|+.+|..+++
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 33344467888888888777665
No 475
>PRK12798 chemotaxis protein; Reviewed
Probab=53.46 E-value=1.9e+02 Score=26.93 Aligned_cols=195 Identities=15% Similarity=0.023 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAA-VTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRL 231 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 231 (398)
....-...|...+-.|+-.+|...+..+-... |.....+..|. -..+...+...|+.+|+.+--..|... .++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 34445566777788899999988887653321 22223333333 345566899999999999988888763 24555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHH---HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFE---VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
-..+....|+.++...+-.+.+..... ++. .+..++.++....+-. -...+...+..
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~-S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~------------------ 250 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRH-SPYASQFAQRFVDLVVRLDDEI-RDARLVEILSF------------------ 250 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhccccc-cHHHHHHHHHh------------------
Confidence 556667889999998888888877655 333 3344444444433221 11223333221
Q ss_pred ccccccccCCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 309 KKETEPQKVDPI---QVELLLGKAYSDGGRVSDAVAVYDRLISSYPND----FRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 309 ~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.+|. .+|+.++..-.-.|+.+-|...-.+++.+.... ..+.+..+....-..++++|.+.+.+
T Consensus 251 --------~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 251 --------MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred --------cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 2222 466668999999999999999999999875432 34455555555555667777766654
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=52.81 E-value=33 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al 347 (398)
.|.-+-..|++++|+.+|.+++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555444
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.25 E-value=1e+02 Score=23.29 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 210 RAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 210 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.+.++|..+.. +....+..|...|..+...|++.+|.+.|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 55555555544 23344555556666666666666666666554
No 478
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.66 E-value=1.7e+02 Score=25.81 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|.++|..|.+.++.+.+.+.+.+.+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3455555555555555555554444443
No 479
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=51.05 E-value=42 Score=18.54 Aligned_cols=14 Identities=14% Similarity=-0.045 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhh
Q 015907 370 VGDAERMFIQARFF 383 (398)
Q Consensus 370 ~~~A~~~~~~al~~ 383 (398)
.++|+.+|+++.+.
T Consensus 24 ~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 24 YEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHc
Confidence 56677777766553
No 480
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.71 E-value=99 Score=23.64 Aligned_cols=33 Identities=3% Similarity=-0.031 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDSTA 194 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 194 (398)
..+|..+...|+.+++..++-.++...|.....
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 457888888889988888888888877665443
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=50.32 E-value=2.2e+02 Score=26.61 Aligned_cols=205 Identities=14% Similarity=-0.031 Sum_probs=124.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHHccC
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSDPDVFRLLG-EVKYELKD 241 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la-~~~~~~g~ 241 (398)
+.+|...|-.-..+ +..+..++. +.+.-..-|..-+-.|+-.++.+.+...-.. .|...-.+..|. -......+
T Consensus 87 a~iy~lSGGnP~vl---r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 87 ALIYLLSGGNPATL---RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHhhHhcCCCHHHH---HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 34454444333333 333444432 3444455566667789999999888665332 222233333333 33445678
Q ss_pred HHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 242 YEGSAAAYRVSTMVSKDINF--EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
...|+..|..+--..|..-. -++..-..+....|+.+++..+-.+..+.+... ..-
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S----------------------~YA 221 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHS----------------------PYA 221 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccC----------------------chH
Confidence 99999999999988887211 255555566688999999888887776655432 222
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHh-CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHhh
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISS-YPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPE--KVKALVDQY 395 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 395 (398)
.+.+-..+..+....+-. -...+...+.. +|.. ..+|..++..-...|+.+-|...-++++.+... -......+|
T Consensus 222 ~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY 300 (421)
T PRK12798 222 SQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLY 300 (421)
T ss_pred HHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHH
Confidence 333333444444444222 12235555553 4433 568889999999999999999999999987533 233444555
No 482
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=50.11 E-value=34 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=15.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHh
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
..|.-.-..|++++|+.+|.++++
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444467788888777776654
No 483
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.50 E-value=39 Score=25.35 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=16.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~ 353 (398)
+|..+...|++++|...|-+|+...|.-
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 5666666666666666666666655543
No 484
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.50 E-value=38 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=15.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 015907 164 KELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
.|.-.-..|+|++|..+|..+++
T Consensus 12 ~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 12 LALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33334456788888887777665
No 485
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.06 E-value=73 Score=22.86 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 261 FEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 261 ~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
+..+..||.+|...|+.+.|...|+.
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444555555555555555555544
No 486
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.91 E-value=60 Score=31.30 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.7
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
...++.++|..|.+.+++.+|+..+-.+-.
T Consensus 317 HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 346777799999999999999999887754
No 487
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=48.88 E-value=82 Score=21.30 Aligned_cols=25 Identities=8% Similarity=0.272 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETL 185 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l 185 (398)
+...|.-+-..|++++|+.+|++++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3334444446666666666665543
No 488
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.57 E-value=42 Score=25.16 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 193 (398)
-..+|..+...|++++|..+|-+++...|+...
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 346778888889999999999999888876543
No 489
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=48.48 E-value=51 Score=30.27 Aligned_cols=47 Identities=13% Similarity=0.206 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhC
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK------------VGDAERMFIQARFFA 384 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~ 384 (398)
...|+.++++|.. .++|..|..+|.++..+|+ |.+|...+.+|-...
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 4567777777764 6678899999999988886 567777777776543
No 490
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.34 E-value=2e+02 Score=25.73 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCCH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--SKDINF 261 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 261 (398)
......+|.+|-..++|..|...+.-. ..+.. ....+..+|.+|.+.++..+|..+..++--+ +.. +.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~-Ne 180 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS-NE 180 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc-CH
Confidence 456778899999999999988876533 22221 1235678899999999999998888776322 222 44
Q ss_pred HH----HHHHHHHHHHcCCchHHHHHHHHH
Q 015907 262 EV----LRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 262 ~~----~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
.. ....++++-..++|-+|-..|.+.
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 334566666667776666666544
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.27 E-value=2.3e+02 Score=26.25 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=40.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCC-----HHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKD-----STALEGAA--VTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la--~~~~~~g~~~~A~~~~~~ 217 (398)
.+..++..++|..|...|+.+....+.. ...+..+. ..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4457788999999999999999875422 23444444 445677899999999986
No 492
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.20 E-value=1.1e+02 Score=22.28 Aligned_cols=48 Identities=17% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.....|......|++..|.+.+.++-+..+..+..+..-+..-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556666677777777777777766544444444444555555443
No 493
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.05 E-value=43 Score=22.70 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=15.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.|.-+-..|+|++|+.+|..+++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 55555666777777777776664
No 494
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=46.28 E-value=3e+02 Score=27.01 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG--DY 208 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~ 208 (398)
+..|..+++.++... |.- .+..-|+.++|+..+++...-. .........+.++...+ .-
T Consensus 300 yk~a~KYLR~al~s~---------p~v---------lLl~~~~l~eal~~~e~~c~~~-~~~lpi~~~~~lle~~d~~~~ 360 (547)
T PF14929_consen 300 YKYAVKYLRLALQSN---------PPV---------LLLIGGRLKEALNELEKFCISS-TCALPIRLRAHLLEYFDQNNS 360 (547)
T ss_pred HHHHHHHHHHHhcCC---------CCe---------EEeccccHHHHHHHHHHhccCC-CccchHHHHHHHHHHhCcccH
Confidence 456777776666444 332 3445588888888877743322 23334444555555555 56
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH---HhhCCCCCHHHHHHHHHHHHH-cCCchHHHHHH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS---TMVSKDINFEVLRGLTNALLA-AKKPDEAVQFL 284 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~p~~~~~~~~~la~~~~~-~~~~~~A~~~~ 284 (398)
..=..+|+.+++.+|........+...+.. ...+...++-+ +.+.| ...+|..++.++.+ .++++.-.+..
T Consensus 361 ~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~--s~~iwle~~~~~l~~~~~~~~~~e~~ 435 (547)
T PF14929_consen 361 SVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP--SHPIWLEFVSCFLKNPSRFEDKEEDH 435 (547)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC--CchHHHHHHHHHHhccccccccHHHH
Confidence 667788899999999876655555544443 44444555422 23344 47788888888887 66665444455
Q ss_pred HHHHH
Q 015907 285 LASRE 289 (398)
Q Consensus 285 ~~a~~ 289 (398)
..+.+
T Consensus 436 ~~~l~ 440 (547)
T PF14929_consen 436 KSALK 440 (547)
T ss_pred HHHHh
Confidence 44443
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.00 E-value=64 Score=27.33 Aligned_cols=21 Identities=5% Similarity=0.037 Sum_probs=15.2
Q ss_pred HccCHHHHHHHHHHHHhhCCC
Q 015907 238 ELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 238 ~~g~~~~A~~~~~~al~~~p~ 258 (398)
..++...|+.++++++.++|.
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCC
Confidence 345667788888888888776
No 496
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.02 E-value=1.4e+02 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 337 SDAVAVYDRLISSY--PNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 337 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+++.++|..+.... ...+..|...|..+...|++.+|.+.|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34566777766533 34567788899999999999999999874
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.49 E-value=50 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=9.4
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al 347 (398)
|.-+-..|++++|+.+|.+++
T Consensus 13 Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444443
No 498
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.13 E-value=57 Score=22.29 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHHHh
Q 015907 367 NGKVGDAERMFIQARF 382 (398)
Q Consensus 367 ~g~~~~A~~~~~~al~ 382 (398)
.|+.++|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3455555555555543
No 499
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.93 E-value=56 Score=32.72 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=54.9
Q ss_pred HHHHHHH--hCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 325 LLGKAYS--DGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 325 ~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+.+.++. ..|+|..++.-..-++...|....++...+.+|...+.++-|++...-.....|.+..
T Consensus 96 ~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 96 NQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 3555554 4579999999999999999999999999999999999999999998878888898844
No 500
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=41.52 E-value=1.3e+02 Score=23.80 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhh--------ccc-c----ccccccccccCCCc-hHHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVK--------DGR-S----GDKKETEPQKVDPI-QVELLLGKAY 330 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~--------~~~-~----~~~~~~~~~~~~~~-~~~~~la~~~ 330 (398)
...+......|+.++|...+.++...+......+.... -+. + ......+-....|. ......+.-.
T Consensus 6 i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~ 85 (155)
T PF10938_consen 6 IQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL 85 (155)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH
Confidence 45677778889999999999888776654311000000 000 0 00000000001111 1223377888
Q ss_pred HhCCChHHHHHHHHHHHHh-------CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 331 SDGGRVSDAVAVYDRLISS-------YP-NDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 331 ~~~g~~~~A~~~~~~al~~-------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
...|+...|...++.+-.. -| .....-...+..+...|++.+|...+..++.
T Consensus 86 l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999988776321 01 1234566788899999999999999998874
Done!