Query 015907
Match_columns 398
No_of_seqs 761 out of 3268
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 04:36:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-32 4.2E-37 253.7 29.5 291 93-394 8-311 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-32 7.5E-37 252.1 26.5 288 96-394 79-379 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 4.2E-31 1.4E-35 240.0 31.8 298 87-395 6-347 (359)
4 3hym_B Cell division cycle pro 100.0 7.5E-31 2.6E-35 235.7 32.7 278 89-395 27-311 (330)
5 2y4t_A DNAJ homolog subfamily 100.0 3E-30 1E-34 242.3 30.0 298 87-395 29-370 (450)
6 2xpi_A Anaphase-promoting comp 100.0 1.5E-28 5.1E-33 239.1 35.7 271 93-395 314-591 (597)
7 2h6f_A Protein farnesyltransfe 100.0 9.5E-30 3.3E-34 232.0 23.6 249 110-395 89-360 (382)
8 2pl2_A Hypothetical conserved 100.0 2.4E-29 8.1E-34 212.6 22.8 200 155-381 2-212 (217)
9 4eqf_A PEX5-related protein; a 100.0 5.1E-29 1.7E-33 227.6 23.3 232 121-387 68-314 (365)
10 1fch_A Peroxisomal targeting s 100.0 2.7E-28 9.3E-33 222.7 26.3 262 97-394 38-336 (368)
11 3hym_B Cell division cycle pro 100.0 2.9E-27 9.8E-32 212.3 29.1 247 110-394 14-276 (330)
12 1fch_A Peroxisomal targeting s 100.0 1.1E-27 3.8E-32 218.6 24.2 258 89-383 69-359 (368)
13 4eqf_A PEX5-related protein; a 100.0 4E-28 1.4E-32 221.6 21.2 259 88-382 69-355 (365)
14 3fp2_A TPR repeat-containing p 100.0 5.1E-27 1.7E-31 225.2 29.2 266 97-392 215-500 (537)
15 3cv0_A Peroxisome targeting si 100.0 5.9E-28 2E-32 216.5 21.0 263 88-386 25-318 (327)
16 2y4t_A DNAJ homolog subfamily 100.0 1E-26 3.5E-31 218.1 30.5 251 103-389 11-292 (450)
17 2xpi_A Anaphase-promoting comp 100.0 1.3E-26 4.6E-31 225.3 31.7 262 96-394 284-556 (597)
18 3ieg_A DNAJ homolog subfamily 100.0 7.5E-27 2.5E-31 211.9 27.5 260 125-394 9-312 (359)
19 2gw1_A Mitochondrial precursor 100.0 3.7E-27 1.3E-31 224.7 24.7 267 97-394 202-489 (514)
20 2h6f_A Protein farnesyltransfe 100.0 4E-27 1.4E-31 214.7 23.6 214 154-394 93-315 (382)
21 3u4t_A TPR repeat-containing p 100.0 9.6E-27 3.3E-31 203.3 23.1 230 129-394 16-261 (272)
22 3fp2_A TPR repeat-containing p 100.0 1.3E-26 4.4E-31 222.4 25.8 264 90-390 31-414 (537)
23 3cv0_A Peroxisome targeting si 100.0 2.8E-26 9.6E-31 205.5 24.9 231 129-394 34-292 (327)
24 2q7f_A YRRB protein; TPR, prot 100.0 4.1E-26 1.4E-30 195.7 24.1 214 156-395 21-234 (243)
25 2gw1_A Mitochondrial precursor 99.9 9.7E-26 3.3E-30 214.9 27.3 285 92-389 14-407 (514)
26 3uq3_A Heat shock protein STI1 99.9 1.3E-25 4.6E-30 194.1 24.0 214 155-395 2-254 (258)
27 2ho1_A Type 4 fimbrial biogene 99.9 4.9E-25 1.7E-29 190.2 27.2 214 155-394 33-249 (252)
28 2pl2_A Hypothetical conserved 99.9 7.6E-26 2.6E-30 191.0 21.5 196 115-347 2-212 (217)
29 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-25 4.7E-30 184.2 21.9 174 190-389 3-176 (184)
30 2vq2_A PILW, putative fimbrial 99.9 1.5E-24 5.1E-29 183.5 28.0 215 154-394 4-222 (225)
31 3u4t_A TPR repeat-containing p 99.9 3.2E-25 1.1E-29 193.6 24.5 254 88-368 7-269 (272)
32 3mkr_A Coatomer subunit epsilo 99.9 7.7E-25 2.6E-29 193.1 26.4 258 91-392 6-273 (291)
33 4g1t_A Interferon-induced prot 99.9 5.8E-26 2E-30 214.5 20.1 260 98-393 152-469 (472)
34 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.3E-24 4.3E-29 190.0 23.4 231 129-392 18-253 (275)
35 4abn_A Tetratricopeptide repea 99.9 1.4E-24 4.9E-29 204.7 24.4 216 131-379 84-317 (474)
36 3vtx_A MAMA; tetratricopeptide 99.9 3.1E-24 1E-28 176.2 22.9 173 156-354 3-175 (184)
37 1ouv_A Conserved hypothetical 99.9 3.5E-23 1.2E-27 181.0 28.5 233 114-394 2-262 (273)
38 2q7f_A YRRB protein; TPR, prot 99.9 1E-23 3.5E-28 180.6 23.2 206 129-369 36-242 (243)
39 4g1t_A Interferon-induced prot 99.9 2.1E-23 7.2E-28 196.9 26.4 294 96-392 63-410 (472)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 8.2E-24 2.8E-28 184.8 21.8 237 98-377 19-269 (275)
41 2ond_A Cleavage stimulation fa 99.9 8.8E-23 3E-27 181.8 28.1 222 132-388 33-275 (308)
42 4i17_A Hypothetical protein; T 99.9 9.9E-23 3.4E-27 173.2 27.1 205 155-394 4-220 (228)
43 3mkr_A Coatomer subunit epsilo 99.9 1.2E-23 4.2E-28 185.4 22.2 222 129-395 12-241 (291)
44 4gyw_A UDP-N-acetylglucosamine 99.9 6.5E-24 2.2E-28 208.0 20.4 135 154-289 5-139 (723)
45 4a1s_A PINS, partner of inscut 99.9 2.8E-24 9.4E-29 199.2 16.8 280 85-387 49-376 (411)
46 3uq3_A Heat shock protein STI1 99.9 3.7E-23 1.3E-27 178.7 22.8 228 91-363 12-256 (258)
47 3sf4_A G-protein-signaling mod 99.9 4.1E-24 1.4E-28 197.3 16.1 275 88-386 13-339 (406)
48 4abn_A Tetratricopeptide repea 99.9 3.2E-23 1.1E-27 195.5 21.8 198 170-394 80-298 (474)
49 3ro2_A PINS homolog, G-protein 99.9 6.6E-24 2.3E-28 190.3 16.3 279 86-387 7-336 (338)
50 4gyw_A UDP-N-acetylglucosamine 99.9 3.3E-23 1.1E-27 203.0 20.8 175 187-387 4-178 (723)
51 2ho1_A Type 4 fimbrial biogene 99.9 2.5E-22 8.4E-27 173.2 23.9 206 119-360 38-249 (252)
52 2ond_A Cleavage stimulation fa 99.9 1.1E-22 3.9E-27 181.1 22.1 247 101-394 33-303 (308)
53 2vq2_A PILW, putative fimbrial 99.9 6.9E-22 2.4E-26 167.0 25.6 212 114-360 4-222 (225)
54 1ouv_A Conserved hypothetical 99.9 3.3E-21 1.1E-25 168.4 29.1 201 155-393 3-223 (273)
55 3qky_A Outer membrane assembly 99.9 4.6E-22 1.6E-26 172.7 20.0 198 154-374 11-252 (261)
56 4i17_A Hypothetical protein; T 99.9 3.8E-21 1.3E-25 163.3 23.1 209 115-365 4-225 (228)
57 3nf1_A KLC 1, kinesin light ch 99.9 4E-22 1.4E-26 177.1 17.3 216 151-386 20-310 (311)
58 4a1s_A PINS, partner of inscut 99.9 2.8E-22 9.6E-27 185.7 15.4 230 129-386 61-335 (411)
59 2pzi_A Probable serine/threoni 99.9 4.3E-22 1.5E-26 195.9 17.4 187 153-369 389-583 (681)
60 3sf4_A G-protein-signaling mod 99.9 6.2E-22 2.1E-26 182.7 17.4 234 125-387 15-300 (406)
61 1qqe_A Vesicular transport pro 99.9 8.5E-22 2.9E-26 174.0 16.6 211 165-393 44-279 (292)
62 3qky_A Outer membrane assembly 99.9 7.2E-21 2.4E-25 165.2 21.8 199 185-391 8-232 (261)
63 3urz_A Uncharacterized protein 99.9 2E-21 6.9E-26 162.7 17.0 178 157-363 3-199 (208)
64 3dra_A Protein farnesyltransfe 99.9 3.8E-20 1.3E-24 162.3 25.1 228 132-394 50-299 (306)
65 3ulq_A Response regulator aspa 99.9 1.9E-21 6.5E-26 178.6 17.4 231 129-386 116-371 (383)
66 3ro2_A PINS homolog, G-protein 99.9 1.9E-21 6.3E-26 174.3 14.7 229 129-386 18-295 (338)
67 3as5_A MAMA; tetratricopeptide 99.9 2.8E-20 9.7E-25 151.9 20.3 172 157-388 7-178 (186)
68 2pzi_A Probable serine/threoni 99.9 1.7E-20 5.9E-25 184.5 22.1 188 109-335 385-583 (681)
69 3as5_A MAMA; tetratricopeptide 99.9 4.3E-20 1.5E-24 150.8 20.9 143 149-292 33-175 (186)
70 4ga2_A E3 SUMO-protein ligase 99.9 3.5E-21 1.2E-25 152.3 13.0 126 163-289 2-128 (150)
71 2yhc_A BAMD, UPF0169 lipoprote 99.9 8.9E-20 3E-24 154.6 21.4 190 157-389 3-219 (225)
72 4ga2_A E3 SUMO-protein ligase 99.9 1.5E-20 5.1E-25 148.7 15.1 142 125-276 3-149 (150)
73 2ooe_A Cleavage stimulation fa 99.8 1E-18 3.4E-23 167.5 29.8 179 210-389 256-460 (530)
74 2xm6_A Protein corresponding t 99.8 1.6E-18 5.4E-23 164.5 30.2 275 97-394 128-446 (490)
75 3dra_A Protein farnesyltransfe 99.8 1.6E-18 5.4E-23 152.1 27.3 251 80-363 28-302 (306)
76 3edt_B KLC 2, kinesin light ch 99.8 1.6E-20 5.5E-25 164.1 14.6 213 155-384 40-282 (283)
77 3ulq_A Response regulator aspa 99.8 3.1E-20 1.1E-24 170.5 16.6 266 82-380 10-332 (383)
78 2ooe_A Cleavage stimulation fa 99.8 7E-19 2.4E-23 168.6 26.6 221 133-388 256-497 (530)
79 3q15_A PSP28, response regulat 99.8 1.6E-19 5.3E-24 165.5 20.9 233 125-384 107-366 (378)
80 3urz_A Uncharacterized protein 99.8 4E-20 1.4E-24 154.8 14.7 171 191-388 3-191 (208)
81 2xm6_A Protein corresponding t 99.8 7.2E-18 2.5E-22 159.9 32.2 273 97-394 56-369 (490)
82 3dss_A Geranylgeranyl transfer 99.8 1.8E-17 6.3E-22 146.0 32.2 231 131-396 46-317 (331)
83 4gco_A Protein STI-1; structur 99.8 1.2E-19 4E-24 138.8 15.5 117 154-271 9-125 (126)
84 1qqe_A Vesicular transport pro 99.8 1.6E-19 5.5E-24 159.3 16.9 185 173-390 32-235 (292)
85 3e4b_A ALGK; tetratricopeptide 99.8 2.2E-18 7.6E-23 161.4 23.4 154 194-382 178-350 (452)
86 3nf1_A KLC 1, kinesin light ch 99.8 1.4E-19 4.8E-24 160.5 13.3 237 113-352 22-310 (311)
87 4f3v_A ESX-1 secretion system 99.8 1E-19 3.5E-24 155.9 11.3 206 160-395 9-248 (282)
88 2r5s_A Uncharacterized protein 99.8 3.3E-19 1.1E-23 145.0 12.9 167 155-348 3-172 (176)
89 1hz4_A MALT regulatory protein 99.8 2.5E-17 8.7E-22 150.4 26.0 266 95-385 25-324 (373)
90 3qou_A Protein YBBN; thioredox 99.8 5.2E-18 1.8E-22 149.2 20.0 169 188-382 113-283 (287)
91 3dss_A Geranylgeranyl transfer 99.8 6.4E-17 2.2E-21 142.6 25.9 226 101-364 47-319 (331)
92 3rjv_A Putative SEL1 repeat pr 99.8 1.6E-17 5.3E-22 139.3 20.9 185 175-395 3-209 (212)
93 2vsy_A XCC0866; transferase, g 99.8 4.5E-18 1.5E-22 164.4 20.0 165 171-361 2-169 (568)
94 3qou_A Protein YBBN; thioredox 99.8 5.1E-18 1.7E-22 149.2 18.6 170 155-348 114-283 (287)
95 2r5s_A Uncharacterized protein 99.8 1.8E-18 6.1E-23 140.6 13.9 168 188-382 2-172 (176)
96 2vsy_A XCC0866; transferase, g 99.8 5.2E-18 1.8E-22 163.9 19.2 161 206-392 3-166 (568)
97 3gyz_A Chaperone protein IPGC; 99.8 7.8E-19 2.7E-23 138.2 10.8 108 151-258 29-136 (151)
98 3gyz_A Chaperone protein IPGC; 99.8 2.8E-18 9.4E-23 135.0 13.5 126 168-294 12-137 (151)
99 3q15_A PSP28, response regulat 99.8 1.2E-17 4.1E-22 153.0 18.6 272 81-379 9-328 (378)
100 3e4b_A ALGK; tetratricopeptide 99.8 1E-16 3.5E-21 150.2 25.2 200 157-393 175-397 (452)
101 4gco_A Protein STI-1; structur 99.8 7.1E-18 2.4E-22 128.8 13.8 97 187-284 8-104 (126)
102 2ifu_A Gamma-SNAP; membrane fu 99.8 1.5E-17 5.1E-22 147.8 17.1 202 164-387 42-267 (307)
103 3edt_B KLC 2, kinesin light ch 99.8 1.2E-17 4.3E-22 145.6 15.9 226 100-349 24-281 (283)
104 2c2l_A CHIP, carboxy terminus 99.8 2.6E-18 8.9E-23 150.6 10.8 198 155-383 1-199 (281)
105 1hz4_A MALT regulatory protein 99.8 2.5E-16 8.4E-21 143.8 24.5 231 129-385 27-284 (373)
106 3q7a_A Farnesyltransferase alp 99.8 2.5E-16 8.4E-21 139.4 23.4 229 131-394 70-343 (349)
107 2ifu_A Gamma-SNAP; membrane fu 99.7 9.4E-18 3.2E-22 149.1 13.6 199 170-389 3-229 (307)
108 1p5q_A FKBP52, FK506-binding p 99.7 6.9E-18 2.4E-22 151.8 12.4 180 99-291 80-295 (336)
109 2vgx_A Chaperone SYCD; alterna 99.7 9.9E-18 3.4E-22 131.9 11.2 118 136-263 8-125 (148)
110 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.3E-16 4.3E-21 135.1 18.7 154 129-292 17-215 (225)
111 3q7a_A Farnesyltransferase alp 99.7 9.4E-16 3.2E-20 135.7 23.7 257 80-363 49-346 (349)
112 1p5q_A FKBP52, FK506-binding p 99.7 3.2E-19 1.1E-23 160.5 1.2 185 171-383 78-294 (336)
113 2fo7_A Synthetic consensus TPR 99.7 6.6E-16 2.2E-20 118.6 19.1 132 159-291 2-133 (136)
114 2vgx_A Chaperone SYCD; alterna 99.7 3.4E-17 1.1E-21 128.9 11.6 117 177-294 6-122 (148)
115 3upv_A Heat shock protein STI1 99.7 2.2E-16 7.4E-21 120.6 15.9 118 155-273 1-124 (126)
116 2xcb_A PCRH, regulatory protei 99.7 3.1E-17 1E-21 128.3 11.1 113 155-268 15-127 (142)
117 3rjv_A Putative SEL1 repeat pr 99.7 5.4E-16 1.8E-20 129.9 19.2 186 133-362 4-208 (212)
118 4f3v_A ESX-1 secretion system 99.7 1.9E-17 6.3E-22 141.9 10.2 197 129-361 19-248 (282)
119 1xi4_A Clathrin heavy chain; a 99.7 1.8E-15 6E-20 152.2 25.1 233 96-393 1061-1319(1630)
120 1a17_A Serine/threonine protei 99.7 8.9E-16 3.1E-20 122.8 17.8 135 157-292 12-148 (166)
121 3sz7_A HSC70 cochaperone (SGT) 99.7 4.8E-16 1.7E-20 124.6 15.7 119 152-271 5-123 (164)
122 2fo7_A Synthetic consensus TPR 99.7 2.2E-15 7.5E-20 115.7 18.8 132 229-386 4-135 (136)
123 2lni_A Stress-induced-phosphop 99.7 6.8E-16 2.3E-20 118.5 15.5 124 152-276 10-133 (133)
124 2vyi_A SGTA protein; chaperone 99.7 9.8E-16 3.4E-20 117.1 16.0 123 155-278 9-131 (131)
125 1dce_A Protein (RAB geranylger 99.7 7.5E-17 2.6E-21 154.3 10.6 185 174-386 45-270 (567)
126 2xcb_A PCRH, regulatory protei 99.7 3E-16 1E-20 122.6 11.8 115 179-294 5-119 (142)
127 2qfc_A PLCR protein; TPR, HTH, 99.7 1.5E-15 5E-20 134.0 17.6 175 191-384 74-267 (293)
128 2qfc_A PLCR protein; TPR, HTH, 99.7 8.6E-15 2.9E-19 129.0 21.8 175 155-349 72-266 (293)
129 4gcn_A Protein STI-1; structur 99.7 1.2E-15 4.3E-20 116.5 13.7 112 155-268 5-123 (127)
130 2c2l_A CHIP, carboxy terminus 99.7 1.1E-15 3.9E-20 133.7 13.9 173 189-392 1-173 (281)
131 1hh8_A P67PHOX, NCF-2, neutrop 99.7 4.2E-15 1.4E-19 124.3 16.8 130 157-290 5-150 (213)
132 3u3w_A Transcriptional activat 99.7 4.6E-15 1.6E-19 130.7 17.9 170 197-384 80-267 (293)
133 2fbn_A 70 kDa peptidylprolyl i 99.7 3.2E-16 1.1E-20 129.8 9.8 126 155-281 35-176 (198)
134 1dce_A Protein (RAB geranylger 99.6 4.6E-16 1.6E-20 148.9 11.6 187 131-352 45-270 (567)
135 1na0_A Designed protein CTPR3; 99.6 1.4E-14 4.9E-19 109.5 17.2 118 157-275 8-125 (125)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.2E-14 7.6E-19 119.9 19.9 149 193-356 7-157 (213)
137 2e2e_A Formate-dependent nitri 99.6 2.3E-15 7.8E-20 122.1 13.3 126 166-292 18-146 (177)
138 3mv2_B Coatomer subunit epsilo 99.6 4.7E-14 1.6E-18 122.4 21.9 185 177-391 85-290 (310)
139 1hxi_A PEX5, peroxisome target 99.6 2.9E-15 9.7E-20 113.4 12.6 102 159-261 18-119 (121)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.5E-16 1.2E-20 146.6 8.8 172 99-283 201-407 (457)
141 1elw_A TPR1-domain of HOP; HOP 99.6 2E-14 6.8E-19 107.6 16.7 114 157-271 3-116 (118)
142 2e2e_A Formate-dependent nitri 99.6 3.4E-15 1.2E-19 121.1 13.1 126 129-264 23-152 (177)
143 3u3w_A Transcriptional activat 99.6 1.5E-14 5.1E-19 127.5 18.2 172 159-349 76-266 (293)
144 1b89_A Protein (clathrin heavy 99.6 7E-16 2.4E-20 139.7 9.4 224 100-393 19-246 (449)
145 3upv_A Heat shock protein STI1 99.6 1.5E-14 5.1E-19 110.2 15.1 102 189-291 1-102 (126)
146 2hr2_A Hypothetical protein; a 99.6 3.9E-15 1.3E-19 115.7 11.8 104 158-262 11-137 (159)
147 3rkv_A Putative peptidylprolyl 99.6 5.3E-15 1.8E-19 118.2 12.2 118 156-274 9-145 (162)
148 2fbn_A 70 kDa peptidylprolyl i 99.6 8.8E-16 3E-20 127.1 7.6 160 197-382 9-185 (198)
149 2dba_A Smooth muscle cell asso 99.6 3.2E-14 1.1E-18 111.3 16.3 118 154-272 24-144 (148)
150 1a17_A Serine/threonine protei 99.6 5.7E-14 2E-18 112.2 17.5 95 192-287 13-107 (166)
151 3q49_B STIP1 homology and U bo 99.6 2.2E-14 7.5E-19 110.9 13.9 117 155-271 6-126 (137)
152 2xev_A YBGF; tetratricopeptide 99.6 5.4E-14 1.9E-18 107.4 15.8 116 159-275 3-124 (129)
153 1xi4_A Clathrin heavy chain; a 99.6 3.1E-13 1.1E-17 136.2 25.2 258 99-393 1091-1360(1630)
154 1b89_A Protein (clathrin heavy 99.6 6.9E-16 2.3E-20 139.7 5.7 203 129-397 16-219 (449)
155 3gw4_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 118.8 14.2 165 168-351 2-178 (203)
156 3sz7_A HSC70 cochaperone (SGT) 99.6 7E-14 2.4E-18 111.8 15.7 106 188-294 7-112 (164)
157 2lni_A Stress-induced-phosphop 99.6 5.6E-14 1.9E-18 107.6 14.3 101 188-289 12-112 (133)
158 4gcn_A Protein STI-1; structur 99.6 4.5E-14 1.5E-18 107.8 13.4 98 191-289 7-111 (127)
159 3q49_B STIP1 homology and U bo 99.6 1.4E-13 4.9E-18 106.2 16.2 107 186-293 3-109 (137)
160 2vyi_A SGTA protein; chaperone 99.6 5.8E-14 2E-18 107.1 13.7 95 191-286 11-105 (131)
161 3gw4_A Uncharacterized protein 99.6 3.6E-14 1.2E-18 117.5 12.9 162 202-385 2-178 (203)
162 2hr2_A Hypothetical protein; a 99.6 6.9E-14 2.3E-18 108.7 13.3 103 192-295 11-136 (159)
163 1elr_A TPR2A-domain of HOP; HO 99.5 8.2E-14 2.8E-18 106.3 13.4 118 156-275 2-126 (131)
164 4b4t_Q 26S proteasome regulato 99.5 1.9E-13 6.4E-18 127.2 18.3 206 159-383 5-245 (434)
165 1hxi_A PEX5, peroxisome target 99.5 6E-14 2.1E-18 106.0 12.0 96 194-290 19-114 (121)
166 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.5E-15 1.5E-19 139.1 6.9 145 206-376 248-407 (457)
167 2kck_A TPR repeat; tetratricop 99.5 5.6E-14 1.9E-18 104.1 11.5 104 155-258 3-109 (112)
168 1wao_1 Serine/threonine protei 99.5 5.3E-15 1.8E-19 139.1 7.1 131 155-286 3-135 (477)
169 1na0_A Designed protein CTPR3; 99.5 6.5E-13 2.2E-17 100.2 16.9 115 227-367 10-124 (125)
170 1zu2_A Mitochondrial import re 99.5 7.1E-14 2.4E-18 108.4 11.5 99 168-267 12-131 (158)
171 3k9i_A BH0479 protein; putativ 99.5 3E-14 1E-18 107.1 8.5 100 170-270 2-104 (117)
172 1ihg_A Cyclophilin 40; ppiase 99.5 1.1E-13 3.9E-18 125.6 13.8 125 158-283 223-363 (370)
173 4e6h_A MRNA 3'-END-processing 99.5 2.4E-12 8.2E-17 125.0 23.8 229 133-396 327-585 (679)
174 2if4_A ATFKBP42; FKBP-like, al 99.5 2E-14 6.7E-19 129.3 6.6 137 155-292 176-330 (338)
175 1elw_A TPR1-domain of HOP; HOP 99.5 2.1E-12 7E-17 96.4 16.1 98 191-289 3-100 (118)
176 1wao_1 Serine/threonine protei 99.5 3.3E-13 1.1E-17 126.9 13.2 163 125-296 12-203 (477)
177 3rkv_A Putative peptidylprolyl 99.5 4E-13 1.4E-17 107.2 11.3 98 192-290 11-126 (162)
178 3mv2_B Coatomer subunit epsilo 99.5 3.1E-12 1.1E-16 111.0 17.4 183 155-358 97-291 (310)
179 3ro3_A PINS homolog, G-protein 99.5 6.8E-13 2.3E-17 105.0 12.4 137 156-292 7-160 (164)
180 2dba_A Smooth muscle cell asso 99.5 2.4E-12 8.4E-17 100.4 15.3 104 186-290 22-128 (148)
181 4b4t_Q 26S proteasome regulato 99.4 2.5E-12 8.7E-17 119.5 16.7 218 86-349 6-245 (434)
182 2xev_A YBGF; tetratricopeptide 99.4 2.4E-12 8.3E-17 98.1 13.4 98 193-291 3-106 (129)
183 4e6h_A MRNA 3'-END-processing 99.4 1.6E-11 5.6E-16 119.1 22.2 189 174-386 325-536 (679)
184 2kck_A TPR repeat; tetratricop 99.4 1.4E-12 4.9E-17 96.3 11.5 105 187-291 1-107 (112)
185 3ro3_A PINS homolog, G-protein 99.4 1.2E-12 4.2E-17 103.6 11.4 99 192-290 9-118 (164)
186 2if4_A ATFKBP42; FKBP-like, al 99.4 2.7E-13 9.3E-18 121.8 8.2 158 189-389 176-334 (338)
187 1zu2_A Mitochondrial import re 99.4 1.9E-12 6.4E-17 100.4 11.4 91 129-228 15-127 (158)
188 1elr_A TPR2A-domain of HOP; HO 99.4 2.7E-12 9.1E-17 97.7 12.1 123 226-368 4-126 (131)
189 3k9i_A BH0479 protein; putativ 99.4 6.5E-13 2.2E-17 99.7 8.2 93 131-232 6-101 (117)
190 1ihg_A Cyclophilin 40; ppiase 99.4 6.8E-12 2.3E-16 113.9 13.6 138 192-375 223-362 (370)
191 2kat_A Uncharacterized protein 99.3 1.8E-11 6.3E-16 91.3 12.3 96 176-271 3-99 (115)
192 1na3_A Designed protein CTPR2; 99.3 3.1E-11 1.1E-15 85.6 12.0 84 156-239 7-90 (91)
193 2l6j_A TPR repeat-containing p 99.3 1.8E-12 6E-17 95.9 5.6 91 193-284 5-101 (111)
194 2l6j_A TPR repeat-containing p 99.3 4.8E-12 1.6E-16 93.6 7.5 95 157-251 3-103 (111)
195 1na3_A Designed protein CTPR2; 99.3 4E-11 1.4E-15 85.0 11.7 85 190-275 7-91 (91)
196 2kat_A Uncharacterized protein 99.2 1.2E-10 4E-15 86.8 12.0 97 133-238 3-101 (115)
197 3ma5_A Tetratricopeptide repea 99.2 8E-11 2.7E-15 85.4 9.6 85 188-272 3-88 (100)
198 2kc7_A BFR218_protein; tetratr 99.2 8.2E-11 2.8E-15 85.0 7.9 89 162-258 4-93 (99)
199 3ma5_A Tetratricopeptide repea 99.1 2.7E-10 9.4E-15 82.5 9.7 85 154-238 3-89 (100)
200 2uy1_A Cleavage stimulation fa 99.1 6.2E-08 2.1E-12 91.2 26.3 84 98-188 28-119 (493)
201 1klx_A Cysteine rich protein B 99.1 2.6E-09 8.9E-14 82.3 14.0 110 171-289 8-125 (138)
202 1klx_A Cysteine rich protein B 99.1 4.7E-09 1.6E-13 80.8 15.2 118 131-268 11-136 (138)
203 3n71_A Histone lysine methyltr 99.1 5.6E-10 1.9E-14 104.4 11.2 127 164-291 315-465 (490)
204 2kc7_A BFR218_protein; tetratr 99.0 7.6E-10 2.6E-14 79.8 8.7 88 196-292 4-92 (99)
205 3n71_A Histone lysine methyltr 99.0 1.2E-09 4.2E-14 102.1 10.7 132 232-384 315-465 (490)
206 3ly7_A Transcriptional activat 99.0 2.9E-08 9.8E-13 87.8 17.5 73 316-389 271-345 (372)
207 3ly7_A Transcriptional activat 98.9 4.3E-08 1.5E-12 86.6 15.8 138 111-258 187-342 (372)
208 3bee_A Putative YFRE protein; 98.9 2E-08 6.7E-13 71.2 10.3 71 188-258 2-75 (93)
209 3u64_A Protein TP_0956; tetrat 98.8 1E-07 3.5E-12 80.8 15.3 175 175-386 49-272 (301)
210 1pc2_A Mitochondria fission pr 98.8 4.2E-08 1.5E-12 75.1 11.5 96 172-268 12-112 (152)
211 3u64_A Protein TP_0956; tetrat 98.8 3.2E-07 1.1E-11 77.8 17.4 104 186-289 146-268 (301)
212 3bee_A Putative YFRE protein; 98.8 2.9E-08 9.9E-13 70.3 9.5 73 154-226 2-77 (93)
213 4g26_A Pentatricopeptide repea 98.8 1.9E-06 6.6E-11 81.1 24.1 165 160-349 28-204 (501)
214 4g26_A Pentatricopeptide repea 98.8 1.5E-06 5.1E-11 81.8 22.3 165 194-383 28-204 (501)
215 2uy1_A Cleavage stimulation fa 98.8 2.2E-06 7.5E-11 80.6 23.2 202 133-382 197-412 (493)
216 1pc2_A Mitochondria fission pr 98.7 1E-07 3.6E-12 72.9 11.0 95 131-234 14-113 (152)
217 2v5f_A Prolyl 4-hydroxylase su 98.7 2.9E-07 9.8E-12 66.8 11.7 75 193-268 6-87 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.7 3.1E-07 1.1E-11 66.6 11.0 77 157-233 4-87 (104)
219 3qww_A SET and MYND domain-con 98.6 2.4E-07 8.3E-12 85.2 11.5 85 171-255 311-411 (433)
220 3qwp_A SET and MYND domain-con 98.6 2.4E-07 8.1E-12 85.4 10.2 106 165-271 294-423 (429)
221 3qww_A SET and MYND domain-con 98.5 5.7E-07 2E-11 82.7 11.4 99 273-391 310-424 (433)
222 3qwp_A SET and MYND domain-con 98.4 1.5E-06 5.1E-11 80.0 10.0 109 129-238 300-425 (429)
223 1nzn_A CGI-135 protein, fissio 98.3 1.5E-05 5.1E-10 58.6 11.1 98 170-268 13-115 (126)
224 4h7y_A Dual specificity protei 98.2 2.2E-05 7.5E-10 59.0 11.7 118 255-393 8-133 (161)
225 1nzn_A CGI-135 protein, fissio 98.2 2E-05 6.7E-10 58.0 10.3 95 131-234 17-116 (126)
226 3ffl_A Anaphase-promoting comp 98.1 3E-05 1E-09 59.6 9.9 112 158-271 20-165 (167)
227 4h7y_A Dual specificity protei 98.0 0.00015 5.1E-09 54.5 12.6 106 155-262 10-129 (161)
228 3ffl_A Anaphase-promoting comp 97.7 0.0003 1E-08 54.2 9.5 133 229-364 23-165 (167)
229 3o48_A Mitochondria fission 1 97.6 0.00047 1.6E-08 50.8 9.4 76 157-232 39-118 (134)
230 1y8m_A FIS1; mitochondria, unk 97.5 0.0011 3.8E-08 49.5 10.3 74 157-230 38-115 (144)
231 3o48_A Mitochondria fission 1 97.5 0.0026 8.7E-08 46.9 11.8 89 178-268 27-119 (134)
232 1y8m_A FIS1; mitochondria, unk 97.5 0.0038 1.3E-07 46.6 12.5 78 189-267 36-117 (144)
233 3kae_A CDC27, possible protein 97.0 0.067 2.3E-06 41.1 16.6 99 155-258 30-146 (242)
234 3txn_A 26S proteasome regulato 96.9 0.018 6.2E-07 51.7 13.9 100 265-383 103-210 (394)
235 3mkq_A Coatomer beta'-subunit; 96.8 0.084 2.9E-06 52.6 19.5 45 203-252 663-707 (814)
236 3kae_A CDC27, possible protein 96.8 0.048 1.6E-06 41.8 12.9 77 319-395 61-155 (242)
237 4gns_B Protein CSD3, chitin bi 96.7 0.012 4.1E-07 57.4 11.6 115 171-287 261-397 (754)
238 4gns_B Protein CSD3, chitin bi 96.7 0.018 6.1E-07 56.2 12.6 112 131-252 265-397 (754)
239 3spa_A Mtrpol, DNA-directed RN 96.7 0.04 1.4E-06 55.1 15.0 102 157-258 126-233 (1134)
240 2ff4_A Probable regulatory pro 96.6 0.13 4.3E-06 46.5 16.7 114 166-293 123-237 (388)
241 3mkq_A Coatomer beta'-subunit; 96.5 0.16 5.4E-06 50.5 18.9 172 166-387 607-779 (814)
242 3txn_A 26S proteasome regulato 96.5 0.11 3.9E-06 46.5 15.7 190 159-369 20-235 (394)
243 2ff4_A Probable regulatory pro 96.3 0.085 2.9E-06 47.6 14.2 62 193-254 172-233 (388)
244 3mkq_B Coatomer subunit alpha; 96.2 0.14 4.7E-06 40.1 12.8 109 156-286 6-114 (177)
245 1qsa_A Protein (soluble lytic 96.1 0.5 1.7E-05 45.3 18.7 208 163-379 219-438 (618)
246 1zbp_A Hypothetical protein VP 96.0 0.11 3.6E-06 43.6 11.9 122 167-295 6-134 (273)
247 3spa_A Mtrpol, DNA-directed RN 96.0 0.084 2.9E-06 52.9 13.0 97 193-289 128-229 (1134)
248 3mkq_B Coatomer subunit alpha; 95.8 0.43 1.5E-05 37.3 13.8 110 190-346 6-115 (177)
249 1ya0_A SMG-7 transcript varian 95.7 0.078 2.7E-06 49.3 11.1 77 194-271 154-230 (497)
250 1ya0_A SMG-7 transcript varian 95.4 0.099 3.4E-06 48.6 10.5 79 160-238 154-232 (497)
251 4fhn_B Nucleoporin NUP120; pro 95.3 0.59 2E-05 48.6 17.1 117 166-286 820-963 (1139)
252 1qsa_A Protein (soluble lytic 95.3 2.1 7.3E-05 40.9 20.3 58 325-382 290-347 (618)
253 1zbp_A Hypothetical protein VP 95.2 0.98 3.3E-05 37.8 14.7 58 201-258 6-63 (273)
254 4b4t_P 26S proteasome regulato 94.8 2.4 8.1E-05 38.9 20.5 188 171-383 29-247 (445)
255 4b4t_R RPN7, 26S proteasome re 94.6 0.15 5E-06 46.7 9.4 97 193-289 132-236 (429)
256 4b4t_R RPN7, 26S proteasome re 94.6 0.19 6.4E-06 46.0 10.0 104 226-351 131-239 (429)
257 4fhn_B Nucleoporin NUP120; pro 94.0 2 6.9E-05 44.7 17.3 151 196-371 816-988 (1139)
258 4b4t_P 26S proteasome regulato 93.9 3.7 0.00013 37.5 19.6 171 155-348 53-246 (445)
259 4b4t_S RPN3, 26S proteasome re 93.3 0.24 8.2E-06 45.8 7.9 64 322-387 233-303 (523)
260 4b4t_S RPN3, 26S proteasome re 91.5 0.38 1.3E-05 44.5 6.8 130 202-353 146-303 (523)
261 1wy6_A Hypothetical protein ST 88.8 5.8 0.0002 29.4 12.4 146 83-256 6-155 (172)
262 4ady_A RPN2, 26S proteasome re 87.2 19 0.00064 36.2 15.4 149 123-283 459-616 (963)
263 4ady_A RPN2, 26S proteasome re 86.1 5.3 0.00018 40.1 10.9 124 159-286 414-549 (963)
264 1wy6_A Hypothetical protein ST 83.8 6 0.00021 29.3 7.6 57 328-384 99-155 (172)
265 3esl_A Checkpoint serine/threo 83.7 15 0.00051 29.2 12.4 92 282-392 58-153 (202)
266 4gq2_M Nucleoporin NUP120; bet 83.6 11 0.00039 38.2 12.4 33 186-218 834-866 (950)
267 4gq2_M Nucleoporin NUP120; bet 81.3 13 0.00046 37.6 12.0 90 198-291 816-927 (950)
268 2wvi_A Mitotic checkpoint seri 81.0 17 0.00057 27.9 10.3 56 338-393 78-135 (164)
269 2wpv_A GET4, UPF0363 protein Y 75.0 40 0.0014 29.0 20.2 26 259-284 132-157 (312)
270 3uzd_A 14-3-3 protein gamma; s 74.3 35 0.0012 28.1 11.1 57 193-249 5-63 (248)
271 3ubw_A 14-3-3E, 14-3-3 protein 73.7 30 0.001 28.7 9.8 61 191-251 30-92 (261)
272 1o9d_A 14-3-3-like protein C; 73.5 30 0.001 28.8 9.8 60 192-251 8-71 (260)
273 3ax2_A Mitochondrial import re 72.2 9.8 0.00034 24.6 5.2 28 326-353 23-50 (73)
274 2br9_A 14-3-3E, 14-3-3 protein 71.8 21 0.00071 29.2 8.4 58 192-249 5-64 (234)
275 3ax2_A Mitochondrial import re 71.2 11 0.00038 24.3 5.3 31 163-193 22-52 (73)
276 3esl_A Checkpoint serine/threo 71.0 27 0.00092 27.7 8.6 66 192-258 80-147 (202)
277 2wpv_A GET4, UPF0363 protein Y 70.4 51 0.0018 28.3 19.1 62 321-382 135-216 (312)
278 3lvg_A Clathrin heavy chain 1; 67.2 0.00087 3E-08 60.9 -19.8 218 155-393 51-268 (624)
279 2npm_A 14-3-3 domain containin 65.1 59 0.002 27.0 11.7 58 193-250 29-91 (260)
280 2w2u_A Hypothetical P60 katani 64.7 8.9 0.0003 25.5 4.0 19 168-186 29-47 (83)
281 3mv2_A Coatomer subunit alpha; 63.9 14 0.00048 31.7 6.0 32 83-114 113-144 (325)
282 2v6y_A AAA family ATPase, P60 62.6 10 0.00035 25.2 4.0 23 164-186 17-39 (83)
283 2ijq_A Hypothetical protein; s 62.4 49 0.0017 25.2 8.5 58 198-255 38-104 (161)
284 2ijq_A Hypothetical protein; s 61.9 50 0.0017 25.1 8.3 61 161-221 35-104 (161)
285 3t5x_A PCI domain-containing p 61.4 24 0.00082 28.1 6.8 51 159-209 15-70 (203)
286 4a1g_A Mitotic checkpoint seri 61.0 50 0.0017 24.8 14.3 59 337-395 82-142 (152)
287 3mkr_B Coatomer subunit alpha; 60.3 32 0.0011 29.6 7.6 33 83-115 101-133 (320)
288 4aez_C MAD3, mitotic spindle c 58.9 70 0.0024 25.8 11.3 57 337-393 131-189 (223)
289 3re2_A Predicted protein; meni 57.4 38 0.0013 29.5 7.5 31 318-348 294-324 (472)
290 3t5v_B Nuclear mRNA export pro 55.4 60 0.002 29.6 9.1 95 131-225 142-254 (455)
291 2crb_A Nuclear receptor bindin 53.3 28 0.00097 23.5 4.8 23 196-218 19-41 (97)
292 1om2_A Protein (mitochondrial 52.2 16 0.00056 24.9 3.7 29 326-354 26-54 (95)
293 1om2_A Protein (mitochondrial 52.0 18 0.00061 24.7 3.8 29 162-190 24-52 (95)
294 3t5x_A PCI domain-containing p 50.9 40 0.0014 26.8 6.5 33 322-354 16-48 (203)
295 3t5v_B Nuclear mRNA export pro 50.7 21 0.00072 32.6 5.3 62 326-387 182-254 (455)
296 2crb_A Nuclear receptor bindin 50.0 33 0.0011 23.1 4.7 27 227-253 16-42 (97)
297 1wfd_A Hypothetical protein 15 50.0 21 0.00072 24.3 4.0 19 168-186 25-43 (93)
298 3iqu_A 14-3-3 protein sigma; s 49.4 1.1E+02 0.0036 25.0 14.5 47 336-382 149-204 (236)
299 3lpz_A GET4 (YOR164C homolog); 48.1 1.4E+02 0.0047 25.9 22.6 28 257-284 132-159 (336)
300 2cpt_A SKD1 protein, vacuolar 47.7 22 0.00077 25.4 4.0 16 170-185 30-45 (117)
301 3u84_A Menin; MLL, JUND, ledgf 47.6 63 0.0022 28.8 7.4 32 317-348 315-346 (550)
302 2rpa_A Katanin P60 ATPase-cont 47.5 20 0.00068 23.5 3.3 25 196-220 16-40 (78)
303 4gq4_A Menin; tumor suppressor 46.4 1.6E+02 0.0056 26.3 10.0 43 320-362 303-351 (489)
304 4b4t_O 26S proteasome regulato 45.9 1.6E+02 0.0055 26.1 12.0 90 165-254 83-197 (393)
305 2v6x_A Vacuolar protein sortin 45.7 25 0.00086 23.3 3.9 20 167-186 22-41 (85)
306 2rpa_A Katanin P60 ATPase-cont 45.4 23 0.00079 23.2 3.4 22 326-347 18-39 (78)
307 2cfu_A SDSA1; SDS-hydrolase, l 43.3 54 0.0019 31.6 7.2 49 193-241 450-498 (658)
308 2cfu_A SDSA1; SDS-hydrolase, l 43.0 37 0.0013 32.7 6.0 48 160-207 451-498 (658)
309 2w2u_A Hypothetical P60 katani 41.7 40 0.0014 22.3 4.3 20 327-346 26-45 (83)
310 4b4t_O 26S proteasome regulato 40.3 2E+02 0.0067 25.5 10.0 25 265-289 131-155 (393)
311 2v6y_A AAA family ATPase, P60 39.4 45 0.0015 22.0 4.3 22 326-347 17-38 (83)
312 2cwy_A Hypothetical protein TT 35.6 1E+02 0.0035 20.9 5.7 24 165-188 8-31 (94)
313 4a5x_A MITD1, MIT domain-conta 34.7 59 0.002 21.6 4.3 23 326-348 22-44 (86)
314 4a5x_A MITD1, MIT domain-conta 33.3 81 0.0028 20.9 4.8 18 203-220 27-44 (86)
315 3lpz_A GET4 (YOR164C homolog); 32.5 2.5E+02 0.0084 24.3 26.3 65 224-289 134-215 (336)
316 3re2_A Predicted protein; meni 32.3 2E+02 0.007 25.2 8.0 84 196-294 239-329 (472)
317 4aez_C MAD3, mitotic spindle c 32.0 2E+02 0.0068 23.2 8.8 60 193-258 121-182 (223)
318 1wfd_A Hypothetical protein 15 31.3 69 0.0024 21.6 4.3 22 326-347 21-42 (93)
319 2cwy_A Hypothetical protein TT 31.0 1.2E+02 0.0042 20.4 7.7 61 232-294 7-72 (94)
320 2v6x_A Vacuolar protein sortin 30.3 92 0.0031 20.5 4.7 23 326-348 19-41 (85)
321 3myv_A SUSD superfamily protei 29.4 1.4E+02 0.0046 27.1 7.2 30 192-221 190-219 (454)
322 3bu8_A Telomeric repeat-bindin 27.9 2.3E+02 0.008 22.7 7.3 36 200-235 122-157 (235)
323 2cpt_A SKD1 protein, vacuolar 27.0 76 0.0026 22.6 4.0 22 326-347 24-45 (117)
324 3mcx_A SUSD superfamily protei 26.7 1.6E+02 0.0055 26.8 7.3 31 192-222 202-232 (477)
325 3kez_A Putative sugar binding 26.6 1.5E+02 0.0051 26.9 7.0 30 192-221 196-225 (461)
326 2wvi_A Mitotic checkpoint seri 26.2 2.2E+02 0.0074 21.7 11.0 60 193-258 67-128 (164)
327 4gq4_A Menin; tumor suppressor 24.8 3.1E+02 0.011 24.6 8.0 74 206-294 259-336 (489)
328 3lew_A SUSD-like carbohydrate 24.5 1.8E+02 0.0062 26.7 7.2 31 192-222 203-233 (495)
329 3myv_A SUSD superfamily protei 24.0 2.1E+02 0.0071 25.9 7.5 29 226-254 190-218 (454)
330 3mkr_B Coatomer subunit alpha; 22.3 3.7E+02 0.013 23.0 9.4 100 159-258 103-230 (320)
331 3kez_A Putative sugar binding 22.2 2.2E+02 0.0076 25.7 7.3 30 226-255 196-225 (461)
332 4a1g_A Mitotic checkpoint seri 21.8 2.6E+02 0.0087 20.9 8.8 48 211-258 84-133 (152)
333 3bu8_A Telomeric repeat-bindin 21.2 3.2E+02 0.011 21.9 8.8 73 208-281 88-168 (235)
334 2vkj_A TM1634; membrane protei 21.0 1.9E+02 0.0066 19.3 5.2 23 326-348 59-81 (106)
335 2npu_A FKBP12-rapamycin comple 20.8 2.1E+02 0.0071 20.7 5.2 19 200-218 48-66 (126)
336 3lew_A SUSD-like carbohydrate 20.6 2.9E+02 0.0099 25.3 7.8 31 226-256 203-233 (495)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-32 Score=253.73 Aligned_cols=291 Identities=18% Similarity=0.119 Sum_probs=197.4
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.....+++++|+..+.+++...|+++..+.. +|.+ .| ++.|..++..++... |.++.+|..+|.++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~~~~~a~~~~~~a~~~~---------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQN---------PLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------CCchHHHHHHHHHH
Confidence 3445667777777777777777777766655 5555 45 777777777777776 77777777777777
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+...++..+|.++...|++++|+..
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCch
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQ 321 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~ 321 (398)
|++++..+|+ +..+|..+|.++...|++++|+..|++++...+.... +.+....+++.. ..+.+++..+|.+
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 7777777777 7777777777777777777777777777665544332 222222333332 2233344444543
Q ss_pred --HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 322 --VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 322 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++.++
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 3334667777777777777777777777777666777777777777777777777777777777666666543
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-32 Score=252.09 Aligned_cols=288 Identities=15% Similarity=0.130 Sum_probs=204.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..+++++|+..|++++...|++...+.. +|.+ .| ++.|+..|.+++... |+...++..+|.++...
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYIN-LAAALVAAGDMEGAVQAYVSALQYN---------PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHSCSSHHHHHHHHHHHHC---------TTCTHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHc
Confidence 4556677777777777777776666554 5554 55 667777777777666 66666677777777777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCch--H
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQ--V 322 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~--~ 322 (398)
++..+|+ ++.++..+|.++...|++++|+..|++++...+..+. +.+....++... ..+.+++...|.+ +
T Consensus 229 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 229 ALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence 7777776 6777777777777777777777777666665444433 222223333333 3344444555554 4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 323 ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 323 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|+++.++.++
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 455888888888999999999988888888888888999999999999999999999999899888888775
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.2e-31 Score=239.97 Aligned_cols=298 Identities=13% Similarity=0.123 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
.+.........+++++|+..|++++...|+++..+.. +|.+ .| ++.|+..|.+++... |.+..++.
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~ 75 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIALK---------MDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhC---------CCcchHHH
Confidence 3444555567788999999999999999999888877 8877 77 999999999999998 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISP---KDSTALEGA------------AVTLAELGDYTRAVSLLQDLAKEKPSDPD 227 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 227 (398)
.+|.++...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..++++++..|.++.
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 155 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE 155 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 999999999999999999999999999 888888777 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----------
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------- 296 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 296 (398)
++..+|.++...|++++|+..+++++...|. ++.++..+|.++...|++++|+..++++++..+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999887766544
Q ss_pred ------Cchhhhcccccc--ccccccccCCCchH------HHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 297 ------DDLSVKDGRSGD--KKETEPQKVDPIQV------ELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 297 ------~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+......++... ..+.+++...|.+. +..+|.++...|++++|+.+|+++++.+|+++.++..+|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 112233334333 33444555555533 3448999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++...|++++|+..|+++++++|+++.++..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999999999999999999999999877653
No 4
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.5e-31 Score=235.71 Aligned_cols=278 Identities=9% Similarity=-0.016 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 89 AAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 89 ~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
..+......+++++|+..|++++..+|.+...+.. ++.+ .| ++.|...+.+++... |.++.+|+.+
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l 96 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HIGTLVELNKANELFYLSHKLVDLY---------PSNPVSWFAV 96 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTSTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH-HHHHHHHhhhHHHHHHHHHHHHHhC---------cCCHHHHHHH
Confidence 33444556789999999999999999999888765 4544 77 999999999999998 9999999999
Q ss_pred HHHHHHhc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 165 ELSEEEKN-VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 165 a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|+++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc--CCCch
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK--VDPIQ 321 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 321 (398)
+|+.+|++++...|. ++.++..+|.++...|++++|+.++++++...+.... .. .....
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~~~~~ 237 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------------------EVTVDKWEP 237 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------------------SCTTTTCCH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------------------cccccHHHH
Confidence 999999999999999 9999999999999999999999999999887654322 01 11235
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++..+|++++|+.+|+++++++|+++.++..+.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 67779999999999999999999999999999999999999999999999999999999999999999887653
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.98 E-value=3e-30 Score=242.29 Aligned_cols=298 Identities=14% Similarity=0.126 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 87 RLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 87 ~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
....+......+++.+|+..|++++...|.++..+.. +|.+ .| ++.|+..|.+++... |.+..++.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~ 98 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIQLK---------MDFTAARL 98 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC---------CCcHHHHH
Confidence 3344455557789999999999999999999888877 7777 77 999999999999998 99999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGA------------AVTLAELGDYTRAVSLLQDLAKEKPSDPD 227 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 227 (398)
.+|.++...|++++|+..|++++..+|++. .++..+ |.++...|++++|+.+|+++++..|.+..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999988 776655 66699999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----------
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS----------- 296 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 296 (398)
++..+|.++...|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|++++...+..+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999999999999999999887666543
Q ss_pred ------Cchhhhcccccc--ccccccccCCCch------HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 015907 297 ------DDLSVKDGRSGD--KKETEPQKVDPIQ------VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGI 362 (398)
Q Consensus 297 ------~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 362 (398)
+......++... ..+.+++...|.+ .+..+|.++...|++++|+.+++++++.+|+++.+|..+|.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 122223333333 3345555566654 45559999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 363 ILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 363 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
++...|++++|+..|+++++++|+++.++..+-
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999999999999999877653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.5e-28 Score=239.10 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=248.7
Q ss_pred HHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 93 RSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 93 ~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
-....++.++|+..|++++...|.+...+.. ++.+ .| .++|...|..++... |.+..++..+|.++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPL-HLASLHESGEKNKLYLISNDLVDRH---------PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTSHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHH-HHHHHHHhCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHH
Confidence 3446788899999999999999988887766 5555 77 999999999999888 99999999999999
Q ss_pred HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 169 EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 169 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
...|++++|+..|+++++.+|.+..+|..++.+|...|++++|+.+|+++++..|.+..++..+|.+|...|++++|+.+
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---hHHHH
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI---QVELL 325 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 325 (398)
|++++...|. ++.+|..+|.++...|++++|+.+|+++....+.. ..+|. .++..
T Consensus 464 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 464 LQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT---------------------QSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------------CCCSGGGHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc---------------------ccchhhHHHHHHH
Confidence 9999999999 99999999999999999999999999998754321 23444 45666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+|.+|...|++++|+..|+++++..|+++.+|..+|.+|...|++++|+.+|+++++++|+++.++..+.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887653
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=9.5e-30 Score=232.02 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=226.5
Q ss_pred hhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Q 015907 110 IDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV-LQTRLKKYEET 184 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~ 184 (398)
.+...|++...+.. +|.+ .| ++.|+..|.+++.++ |.+..+|+.+|.++...|+ +++|+.+|+++
T Consensus 89 ai~~~p~~~~a~~~-lg~~~~~~g~~~~Al~~~~~al~l~---------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 89 QIIYSDKFRDVYDY-FRAVLQRDERSERAFKLTRDAIELN---------AANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp EECCCHHHHHHHHH-HHHHHHHTCCCHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhhCChhhHHHHHH-HHHHHHHCCChHHHHHHHHHHHHhC---------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 35667777888877 7777 67 999999999999999 9999999999999999997 99999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+.++|++..+|+.+|.++..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|. +..+|
T Consensus 159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~ 237 (382)
T 2h6f_A 159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVW 237 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH-cCCchHH-----HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC--Ch
Q 015907 265 RGLTNALLA-AKKPDEA-----VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG--RV 336 (398)
Q Consensus 265 ~~la~~~~~-~~~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~ 336 (398)
+.+|.++.. .|.+++| +.+|++++.+. .+...+|.++|.++...| ++
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-------------------------P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-------------------------PHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-------------------------CCCHHHHHHHHHHHHccCccch
Confidence 999999999 5665888 58898886632 222457777999999988 69
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCChHHHHHhh
Q 015907 337 SDAVAVYDRLISSYPNDFRGYLAKGIILKENG--------K-VGDAERMFIQA-RFFAPEKVKALVDQY 395 (398)
Q Consensus 337 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~l~ 395 (398)
++|+..++++ +.+|++..++..+|.+|..+| + +++|+.+|+++ ++++|.....|..+-
T Consensus 293 ~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 293 PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999999998 899999999999999999985 3 59999999999 999999999998764
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=2.4e-29 Score=212.58 Aligned_cols=200 Identities=20% Similarity=0.161 Sum_probs=176.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 235 VKYEL-----------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 235 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
++... |++++|+..|+++++++|+ ++.++..+|.++...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 147 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL------------- 147 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------
Confidence 99999 9999999999999999999 9999999999999999999999999999873
Q ss_pred cccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 304 GRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
. +...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 148 ------------~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 148 ------------E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ------------C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred ------------c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 3 3456777899999999999999999999999999999999999999999999999999998764
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=5.1e-29 Score=227.57 Aligned_cols=232 Identities=18% Similarity=0.217 Sum_probs=205.9
Q ss_pred hhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH
Q 015907 121 KTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALE 196 (398)
Q Consensus 121 ~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 196 (398)
+.. +|.. .| ++.|+..|++++... |.++.+|+.+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 68 ~~~-~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 137 (365)
T 4eqf_A 68 AFE-EGLKRLKEGDLPVTILFMEAAILQD---------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137 (365)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 444 5555 78 999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL----------LGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLR 265 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 265 (398)
.+|.+|...|++++|+.++++++++.|++..++.. +|.++...|++++|+.+|++++..+|.. ++.++.
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 99999999999999999999999999876655544 4999999999999999999999999973 588999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 345 (398)
.+|.++...|++++|+.+|+++++..+ ....++..+|.++...|++++|+.+|++
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRP-------------------------EDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999976322 2235667799999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 346 LISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 346 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+++.+|+++.++..+|.+|..+|++++|+.+|++++++.|++
T Consensus 273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999874
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.7e-28 Score=222.70 Aligned_cols=262 Identities=16% Similarity=0.156 Sum_probs=227.6
Q ss_pred HHhHHHHHH-hhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 97 EQKKAEEIK-EFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 97 ~~~~~eA~~-~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
.+++.+|+. .|.+++...|.++. .+.. +|.. .| ++.|+..|.+++... |.++.++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~ 107 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQD---------PKHMEAWQYLGTT 107 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHH-HHHHHHHTTCHHHHHHHHHHHHHSC---------TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHH
Confidence 356778888 89888888777652 2333 5555 77 999999999999998 9999999999999
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------H
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR----------------L 231 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~ 231 (398)
+...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+. .
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876664 4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
++.++ ..|++++|+.+|++++..+|.. ++.++..+|.++...|++++|+.+|++++...
T Consensus 188 ~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 247 (368)
T 1fch_A 188 LGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------- 247 (368)
T ss_dssp THHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 66666 8999999999999999999973 47899999999999999999999999997632
Q ss_pred ccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---
Q 015907 311 ETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK--- 387 (398)
Q Consensus 311 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 387 (398)
.....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|++++.+.|++
T Consensus 248 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 248 ------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 22235667799999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------hHHHHHh
Q 015907 388 --------VKALVDQ 394 (398)
Q Consensus 388 --------~~~~~~l 394 (398)
..+|..+
T Consensus 322 ~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 322 RGEGGAMSENIWSTL 336 (368)
T ss_dssp ---CCCCCHHHHHHH
T ss_pred cccccchhhHHHHHH
Confidence 6777654
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.9e-27 Score=212.28 Aligned_cols=247 Identities=11% Similarity=0.012 Sum_probs=222.6
Q ss_pred hhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 015907 110 IDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETL 185 (398)
Q Consensus 110 ~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 185 (398)
.+...|.+++.... ++.. .| ++.|+..|.+++... |.+...+..++.++...|++++|+..+++++
T Consensus 14 ~~~~~~~~~~~~~~-~a~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 14 SVDGLQENLDVVVS-LAERHYYNCDFKMCYKLTSVVMEKD---------PFHASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp ------CCCTTHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhchhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC---------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555544 4444 67 999999999999998 9999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELG-DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
+.+|+++.++..+|.++...| ++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++...|. +..++
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 162 (330)
T 3hym_B 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPM 162 (330)
T ss_dssp HHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHH
T ss_pred HhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 342 (398)
..+|.++...|++++|+.++++++. ..|. .++..+|.++...|++++|+.+
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~---------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALS---------------------------IAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT---------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---------------------------hCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999855 3343 4566699999999999999999
Q ss_pred HHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 343 YDRLISSY---------PNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 343 ~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
+++++... |....++..+|.++...|++++|+.+|+++++++|+++.++..+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 276 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99999976 66788999999999999999999999999999999999988765
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=1.1e-27 Score=218.63 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=234.8
Q ss_pred HHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH
Q 015907 89 AAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK 164 (398)
Q Consensus 89 ~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l 164 (398)
.........+++.+|+..|++++...|.++..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~l 138 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY-LGTTQAENEQELLAISALRRCLELK---------PDNQTALMAL 138 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCcCHHHHHHHHHHHHhcC---------CCCHHHHHHH
Confidence 34445567789999999999999999999998877 8877 77 999999999999999 9999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPKDSTALE----------------GAAVTLAELGDYTRAVSLLQDLAKEKPS--DP 226 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~ 226 (398)
|.++...|++++|+..|++++...|.+...+. .++.++ ..|++++|+..++++++..|. ++
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccH
Confidence 99999999999999999999999999887665 466666 999999999999999999999 89
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|.++...|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+.+|++++...
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 281 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------------- 281 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 99999999999999999999999999999999 99999999999999999999999999997632
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-----------hHHHHHHHHHHHHcCCHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND-----------FRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~ 375 (398)
.....++..+|.+|...|++++|+.+|++++.+.|++ ..+|..+|.++..+|++++|..
T Consensus 282 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 282 ----------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp ----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ----------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 2223566779999999999999999999999999888 8999999999999999999999
Q ss_pred HHHHHHhh
Q 015907 376 MFIQARFF 383 (398)
Q Consensus 376 ~~~~al~~ 383 (398)
.+++++..
T Consensus 352 ~~~~~l~~ 359 (368)
T 1fch_A 352 ADARDLST 359 (368)
T ss_dssp HHTTCHHH
T ss_pred hHHHHHHH
Confidence 99877764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=4e-28 Score=221.63 Aligned_cols=259 Identities=15% Similarity=0.110 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+.........+++++|+..|++++...|++...+.. +|.+ .| ++.|+..|.+++.+. |.++.++..
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~ 138 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQ---------PNNLKALMA 138 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC---------CCCHHHHHH
Confidence 344555667889999999999999999999998887 8888 78 999999999999999 999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA----------AVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRL 231 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 231 (398)
+|.++...|++++|+..|+++++..|++..++..+ |.++...|++++|+.+|+++++..|. ++.++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999999999876666554 99999999999999999999999999 8999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
+|.++...|++++|+.+|++++...|+ ++.+|..+|.++...|++++|+.+|++++...
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------- 277 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-------------------- 277 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 999999999999999999999999999 99999999999999999999999999997632
Q ss_pred cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------------DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
.+...++..+|.+|...|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.+.....+
T Consensus 278 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 -----PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred -----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 222456677999999999999999999999999877 367899999999999999998887766
Q ss_pred HHh
Q 015907 380 ARF 382 (398)
Q Consensus 380 al~ 382 (398)
.+.
T Consensus 353 ~l~ 355 (365)
T 4eqf_A 353 DLD 355 (365)
T ss_dssp CCG
T ss_pred hHH
Confidence 443
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=5.1e-27 Score=225.21 Aligned_cols=266 Identities=13% Similarity=0.089 Sum_probs=235.5
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhh------hcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTI------GLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~------~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
.+.+.+|+..|++++...|+++..+.. .+|.+ .| ++.|+..|.+++... |. ..++..+|.
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---------~~-~~~~~~l~~ 284 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---------PT-PNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------CC-chHHHHHHH
Confidence 457889999999999999998764221 14444 66 899999999999998 88 899999999
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLL 326 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 326 (398)
.+|++++...|+ ++.++..+|.++...|++++|+.+|++++...+..+. ....-..+..+
T Consensus 365 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~~ 424 (537)
T 3fp2_A 365 AFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK-------------------IHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS-------------------CSSTTHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh-------------------hHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999887654422 00111234557
Q ss_pred HHHHHhC----------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 327 GKAYSDG----------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 327 a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
|.++... |++++|+.+|+++++.+|++..++..+|.+|...|++++|+.+|+++++++|++.....
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8889888 99999999999999999999999999999999999999999999999999999887654
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=5.9e-28 Score=216.50 Aligned_cols=263 Identities=17% Similarity=0.123 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+.........+++++|+..|++++...|.+...+.. +|.+ .| ++.|...|.+++... |.+..++..
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~ 94 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS-LGLTQAENEKDGLAIIALNHARMLD---------PKDIAVHAA 94 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------cCCHHHHHH
Confidence 344555567789999999999999999999988877 7777 77 999999999999998 999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA--------------AV-TLAELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
+|.++...|++++|+..|++++...|.+...+..+ +. ++...|++++|+.+++++++..|.++.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 174 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999999999999998877776 66 6888999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
+..+|.++...|++++|+.++++++..+|+ ++.++..+|.++...|++++|+..++++++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------- 236 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN----------------- 236 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------
Confidence 999999999999999999999999999999 99999999999999999999999999987632
Q ss_pred ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 309 KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------------DFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
.....++..+|.++...|++++|+.+|++++...|. +..++..+|.++..+|++++|...
T Consensus 237 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 237 --------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 222356667999999999999999999999999999 789999999999999999999999
Q ss_pred HHHHHhhCCC
Q 015907 377 FIQARFFAPE 386 (398)
Q Consensus 377 ~~~al~~~p~ 386 (398)
+++++...|+
T Consensus 309 ~~~~l~~~~~ 318 (327)
T 3cv0_A 309 YAQNVEPFAK 318 (327)
T ss_dssp TTCCSHHHHH
T ss_pred HHHHHHhcch
Confidence 9988876554
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1e-26 Score=218.13 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=207.5
Q ss_pred HHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHH
Q 015907 103 EIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRL 178 (398)
Q Consensus 103 A~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 178 (398)
+...+..++..+|.++..+.. +|.. .| ++.|+..|.+++... |.++.+++.+|.++...|++++|+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLE-LGKKLLAAGQLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ------------CHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccccccHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHH
Confidence 344566777888988888877 7766 67 999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHH
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRLL------------GEVKYELKDYE 243 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~ 243 (398)
..|+++++.+|+++.++..+|.+|...|++++|+..|+++++..|.+. .++..+ |.++...|+++
T Consensus 81 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 81 PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999988 776655 66699999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHH
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVE 323 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (398)
+|+..|++++...|. +..++..+|.++...|++++|+.+|++++...+.. ..++
T Consensus 161 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------------------~~~~ 214 (450)
T 2y4t_A 161 AAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN-------------------------TEAF 214 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC-------------------------HHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------HHHH
Confidence 999999999999999 99999999999999999999999999997744322 3455
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK------------GIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 324 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+|.+|...|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++++.+.|+++.
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 5577777777777777777777777777777666555 77777777777777777777777777654
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.3e-26 Score=225.31 Aligned_cols=262 Identities=8% Similarity=-0.030 Sum_probs=238.2
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHh
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEK 171 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~ 171 (398)
..++.++|++.|++++.. |.+...+.. ++.. .| +++|+.+|.+++... |.+..++..++.++...
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEID---------PYNLDVYPLHLASLHES 352 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCCTTHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcC---------cccHHHHHHHHHHHHHh
Confidence 357788999999998877 556666655 5555 77 999999999999888 88888999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 251 (398)
|++++|+..|++++...|+++.++..+|.+|...|++++|+.+|+++++..|.+..+|..++.++...|++++|+..|++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 252 STMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 252 al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
++...|+ +..++..++.++...|++++|+.+|+++....+ .....+..+|.+|.
T Consensus 433 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 433 AARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-------------------------YDPLLLNELGVVAF 486 (597)
T ss_dssp HHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------------CCHHHHHHHHHHHH
T ss_pred HHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHH
Confidence 9999999 899999999999999999999999999876322 22345666999999
Q ss_pred hCCChHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 332 DGGRVSDAVAVYDRLISS------YPND-FRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
..|++++|+.+|+++++. +|++ ..+|..+|.+|...|++++|+..|+++++++|+++.+|..+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999998 5654 78999999999999999999999999999999999988765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=7.5e-27 Score=211.86 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=224.6
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
+|.. .| ++.|+..|.+++... |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 5555 77 999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLL------------GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
++...|++++|+..|+++++..| ++..++..+ |.++...|++++|+..+++++...|. ++.++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 99999999999999999999999 888888777 79999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccccc--ccccccccCCCchHHH--------------
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRSGD--KKETEPQKVDPIQVEL-------------- 324 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------- 324 (398)
.+|.++...|++++|+..+++++...+..+. +.+....++... ..+..++...|.....
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998776555443 333333444443 3344555555654322
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFR----GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.+|.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 2488899999999999999999999998864 466789999999999999999999999999998888765
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-27 Score=224.72 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=241.5
Q ss_pred HHhHHHHHHhhcchhh-----c--CCC-------chhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 97 EQKKAEEIKEFGPIDY-----D--API-------ETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~-----~--~p~-------~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
.+++++|+..|++++. . .|+ ....+.. +|.+ .| ++.|+..|.+++... |. .
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~---------~~-~ 270 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF---------PR-V 270 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC---------CC-H
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC---------cc-H
Confidence 6788999999999887 4 444 3444444 6665 67 999999999999998 88 9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
.|++++|+..|++++...|. ++.++..+|.++...|++++|+.+|++++...+..+. ...
T Consensus 351 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~ 410 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG-------------------IYV 410 (514)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS-------------------CSS
T ss_pred cCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch-------------------HHH
Confidence 99999999999999999999 8999999999999999999999999999886554311 011
Q ss_pred CchHHHHHHHHHHh---CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 319 PIQVELLLGKAYSD---GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 319 ~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
...++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 12377789999999 99999999999999999999999999999999999999999999999999999999887654
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=4e-27 Score=214.71 Aligned_cols=214 Identities=13% Similarity=0.025 Sum_probs=198.8
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.|.+..+|..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 388999999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKET 312 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (398)
|.++..+|++++|+.+|++++.++|+ +..+|..+|.++...|++++|+.+|+++++.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---------------------- 229 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---------------------- 229 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----------------------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------
Confidence 99999999999999999999999999 9999999999999999999999999999763
Q ss_pred ccccCCCchHHHHHHHHHHh-CCChHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC
Q 015907 313 EPQKVDPIQVELLLGKAYSD-GGRVSDA-----VAVYDRLISSYPNDFRGYLAKGIILKENG--KVGDAERMFIQARFFA 384 (398)
Q Consensus 313 ~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 384 (398)
......+|.++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|++.++++ +.+
T Consensus 230 ---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 230 ---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred ---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 22234677779999999 5665888 59999999999999999999999999988 699999999998 999
Q ss_pred CCChHHHHHh
Q 015907 385 PEKVKALVDQ 394 (398)
Q Consensus 385 p~~~~~~~~l 394 (398)
|+++.++..+
T Consensus 306 p~~~~al~~L 315 (382)
T 2h6f_A 306 HSSPYLIAFL 315 (382)
T ss_dssp CCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9998877654
No 21
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=9.6e-27 Score=203.30 Aligned_cols=230 Identities=14% Similarity=0.048 Sum_probs=198.5
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD----STALEGAAVTLA 203 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 203 (398)
.| ++.|+..|.+++... |.++.++..+|.++...|++++|+..|++++. .|.+ ..++..+|.++.
T Consensus 16 ~~~~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKK---------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp TTCHHHHHHHHHHHHHTT---------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 67 899999999999888 88888999999999999999999999999998 4444 445899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 204 ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 204 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
..|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|. ++.++..+|......+++++|+..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 899999999555555699999999
Q ss_pred HHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCC---hHHHHHHHHHHHHhC---CC-----
Q 015907 284 LLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR---VSDAVAVYDRLISSY---PN----- 352 (398)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---p~----- 352 (398)
|+++++..+ +....+..+|.++...|+ +++|+..|+++++.. |+
T Consensus 165 ~~~a~~~~p-------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 165 FVKVLELKP-------------------------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHST-------------------------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHhCc-------------------------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 999866322 223566669999988888 888999999999875 44
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
...++..+|.+|...|++++|+.+|+++++++|+++.++-.+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 236888999999999999999999999999999999887654
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.3e-26 Score=222.39 Aligned_cols=264 Identities=12% Similarity=0.074 Sum_probs=222.1
Q ss_pred HHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 90 AVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 90 ~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
........+++++|+..|++++..+|+++..+.. +|.+ .| ++.|+..|.+++.+. |.++.+++.+|
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la 100 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN-ISACYISTGDLEKVIEFTTKALEIK---------PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC---------CchHHHHHHHH
Confidence 3344446778899999999999999999988877 8887 77 999999999999998 99999999999
Q ss_pred HHHHHhccHHHHHHHH----------------------------------------------------------------
Q 015907 166 LSEEEKNVLQTRLKKY---------------------------------------------------------------- 181 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~---------------------------------------------------------------- 181 (398)
.++...|++++|+..|
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999888877776655
Q ss_pred ---------------------------------------------HHHHhcCCCCHH-------HHHHHHHHHHHcCCHH
Q 015907 182 ---------------------------------------------EETLSISPKDST-------ALEGAAVTLAELGDYT 209 (398)
Q Consensus 182 ---------------------------------------------~~~l~~~p~~~~-------~~~~la~~~~~~g~~~ 209 (398)
+++++.+|+++. ++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 344455666643 4777788888889999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+|+..++++++..|+ ..++..+|.++...|++++|+.+|++++..+|+ ++.++..+|.++...|++++|+..|++++.
T Consensus 261 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 261 DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999988 888889999999999999999999999999998 889999999999999999999999988866
Q ss_pred HhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 290 RLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
..+ ....++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 339 ~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 339 LNP-------------------------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HCT-------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred hCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 322 2235677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChHH
Q 015907 370 VGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 370 ~~~A~~~~~~al~~~p~~~~~ 390 (398)
+++|+..|++++.+.|++...
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCcchhh
Confidence 999999999999988776543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=2.8e-26 Score=205.53 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=210.3
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++... |.+..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA---------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 67 999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLL--------------GE-VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+++|+..++++++..|.+...+..+ +. ++...|++++|+.++++++...|. +..++..+|.++.
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 9999999999999999988777776 66 688899999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..|++++|+.++++++...+ ....++..+|.++...|++++|+.+|+++++..|+
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRP-------------------------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhccHHHHHHHHHHHHHhCC-------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999866322 22356667999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHh
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQARFFAPE------------KVKALVDQ 394 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l 394 (398)
+..++..+|.++...|++++|+..|++++.+.|+ ++.+|..+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence 9999999999999999999999999999999999 67776654
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.95 E-value=4.1e-26 Score=195.69 Aligned_cols=214 Identities=13% Similarity=0.175 Sum_probs=182.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
..+..++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+...|++++|+.+|++++...|. +..++..+|.++...|++++|+.++++++...+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------------------- 156 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE----------------------- 156 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------------------
Confidence 99999999999999999999999 999999999999999999999999999876322
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
....++..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+.+|+++++++|+++.++..+-
T Consensus 157 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 157 --NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp --TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 223566679999999999999999999999999999999999999999999999999999999999999999887653
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.7e-26 Score=214.90 Aligned_cols=285 Identities=10% Similarity=0.005 Sum_probs=191.7
Q ss_pred HHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHH
Q 015907 92 RRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELS 167 (398)
Q Consensus 92 ~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~ 167 (398)
......+++.+|+..|++++...|+ +..+.. +|.+ .| ++.|+..|.+++... |.+..+++.+|.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKED-PVFYSN-LSACYVSVGDLKKVVEMSTKALELK---------PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCC-HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC---------SCCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcc-HHHHHh-HHHHHHHHhhHHHHHHHHHHHhccC---------hHHHHHHHHHHHH
Confidence 3344556777777777777777773 444444 5555 56 777777777777776 7777777777777
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCC--------------------------------------------------------
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKD-------------------------------------------------------- 191 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~-------------------------------------------------------- 191 (398)
+...|++++|+..|++++...|.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 777777777777777776665422
Q ss_pred -----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHH
Q 015907 192 -----------------------STALEGAAVTLAE---LGDYTRAVSLLQDLAK-----E--K-------PSDPDVFRL 231 (398)
Q Consensus 192 -----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~ 231 (398)
+.++..+|.++.. .|++++|+.+|+++++ + . |.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 4445555555554 6666666666666666 3 2 233455666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC-----Cchhhhcccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS-----DDLSVKDGRS 306 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 306 (398)
+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...+..+. +.+....++.
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 666666666666666666666666665 666666666666666666666666665554433322 2222223333
Q ss_pred cc--ccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 307 GD--KKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 307 ~~--~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.. ..+.+++...|. .++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 223333334444 45666999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChH
Q 015907 383 FAPEKVK 389 (398)
Q Consensus 383 ~~p~~~~ 389 (398)
..|+++.
T Consensus 401 ~~~~~~~ 407 (514)
T 2gw1_A 401 LENKLDG 407 (514)
T ss_dssp HHHTSSS
T ss_pred hhhccch
Confidence 9888754
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-25 Score=194.06 Aligned_cols=214 Identities=18% Similarity=0.134 Sum_probs=195.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PD 227 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 227 (398)
+..+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|.. +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 3456789999999999999999999999999999 899999999999999999999999999999998876 78
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--------------------------hCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTM--------------------------VSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
++..+|.++...|++++|+.+|++++. .+|. +..++..+|.++...|++++|+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999 5566 6778999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
..|++++...+ ....++..+|.++...|++++|+.+|+++++.+|+++.++..+|
T Consensus 160 ~~~~~a~~~~~-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 214 (258)
T 3uq3_A 160 KAYTEMIKRAP-------------------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214 (258)
T ss_dssp HHHHHHHHHCT-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCc-------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999976322 22356667999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCChHHHHHhh
Q 015907 362 IILKENGKVGDAERMFIQARFFA------PEKVKALVDQY 395 (398)
Q Consensus 362 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~ 395 (398)
.++..+|++++|+..|+++++++ |++..++..+.
T Consensus 215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99999999999999999999999 98888776543
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.95 E-value=4.9e-25 Score=190.23 Aligned_cols=214 Identities=17% Similarity=0.116 Sum_probs=199.3
Q ss_pred CCh-HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 155 PTE-EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 155 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
|.. +.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 112 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHH
Confidence 554 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTM--VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
.++...|++++|+.+|++++. ..|. +..++..+|.++...|++++|+.++++++...
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------- 171 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-------------------- 171 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Confidence 999999999999999999999 7887 88999999999999999999999999987632
Q ss_pred cccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
.....++..+|.++...|++++|+.+++++++..|.+...+..++.++...|++++|..++++++++.|+++.++
T Consensus 172 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 172 -----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 222356667999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHh
Q 015907 392 VDQ 394 (398)
Q Consensus 392 ~~l 394 (398)
.-+
T Consensus 247 ~~l 249 (252)
T 2ho1_A 247 EFQ 249 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=7.6e-26 Score=191.02 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=163.6
Q ss_pred CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 115 PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 115 p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
|.++..+.. +|.+ .| +++|+..|++++..+ |.++.+++.+|.++...|++++|+..|+++++.+|+
T Consensus 2 p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLR-LGVQLYALGRYDAALTLFERALKEN---------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp --CCHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTS---------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 556666665 7766 77 999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 191 DSTALEGAAVTLAEL-----------GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 191 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
++.++..+|.++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++++ +
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~- 149 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D- 149 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-
Confidence 999999999999999 999999999999999999999999999999999999999999999999999 7
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA 339 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 339 (398)
++.++..+|.++...|++++|+..|+++++.. ++...++..+|.++...|++++|
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQA-------------------------PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHTC-------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCChHHHHHHHHHHHHccCHHHH
Confidence 89999999999999999999999999996632 22235666799999999999999
Q ss_pred HHHHHHHH
Q 015907 340 VAVYDRLI 347 (398)
Q Consensus 340 ~~~~~~al 347 (398)
+..|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998764
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=1.4e-25 Score=184.25 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=124.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
+++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|. +..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666677777767666666666 6666666666
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
++...++++.|+..+.++.... .....++..+|.+|...|++++|+..|++++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-------------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-------------------------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------------------------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 6666677777776666664421 112234455777777777888888888888888
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+|.++.++..+|.+|..+|++++|+..|+++++++|+++.
T Consensus 137 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 8888888888888888888888888888888888887654
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.94 E-value=1.5e-24 Score=183.46 Aligned_cols=215 Identities=13% Similarity=-0.024 Sum_probs=199.6
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+++++++..|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCHHHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 234 EVKYEL-KDYEGSAAAYRVSTM--VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
.++... |++++|+.++++++. ..|. ...++..+|.++...|++++|+.+++++++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------ 144 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP------------------ 144 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------
Confidence 999999 999999999999999 5666 688999999999999999999999999876322
Q ss_pred ccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 311 ETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP-NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 311 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
....++..+|.++...|++++|+.+++++++..| .+...+..++.++...|++++|..+++.+...+|+++.
T Consensus 145 -------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 145 -------QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp -------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 2235666799999999999999999999999999 99999999999999999999999999999999999998
Q ss_pred HHHHh
Q 015907 390 ALVDQ 394 (398)
Q Consensus 390 ~~~~l 394 (398)
+..-+
T Consensus 218 ~~~~l 222 (225)
T 2vq2_A 218 LQTVL 222 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=3.2e-25 Score=193.61 Aligned_cols=254 Identities=12% Similarity=0.093 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVN 163 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~ 163 (398)
+..+......+++++|+..|++++..+|.++..+.. +|.+ .| ++.|+..|.+++... ........++..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~ 79 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETYFSKV------NATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHH-HHHHHHHTTCHHHHHHHHHHHHTTS------CTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHhhHHHHHHHHHHHHhcc------CchhHHHHHHHH
Confidence 334445557788999999999999999999888777 7777 77 999999999999722 111223566999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..+|......++++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995555567999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC-
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK---PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP- 319 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (398)
+|+.+|+++++.+|+ +..++..+|.++...++ +++|+..|+++++.....+. .. .+
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~-~~~ 219 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA------------------KY-KDE 219 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG------------------GG-HHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc------------------cc-hHH
Confidence 999999999999999 99999999999999999 99999999999886643311 00 00
Q ss_pred -chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 320 -IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 320 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
..++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1456669999999999999999999999999999999998888765543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=7.7e-25 Score=193.14 Aligned_cols=258 Identities=12% Similarity=0.027 Sum_probs=215.7
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCch-hhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIET-EKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~-~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
++.....+.+.+|+..++.+....|.+. +.... ++.. .| ++.|+..+... .|....++..++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~-l~r~yi~~g~~~~al~~~~~~------------~~~~~~a~~~la 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVF-LYRAYLAQRKYGVVLDEIKPS------------SAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHH-HHHHHHHTTCHHHHHHHSCTT------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHH-HHHHHHHCCCHHHHHHHhccc------------CChhHHHHHHHH
Confidence 4555677888999999888877777663 34333 4433 67 88887655331 266778888999
Q ss_pred HHHHHhccHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSI--SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE 243 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 243 (398)
..+...+++++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|+++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999876 699999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHH--HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch
Q 015907 244 GSAAAYRVSTMVSKDINFEVLRGLT--NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ 321 (398)
Q Consensus 244 ~A~~~~~~al~~~p~~~~~~~~~la--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
+|+..|++++..+|+ +.......+ .++...|++++|+.+|++++...+ +...
T Consensus 148 ~A~~~l~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-------------------------~~~~ 201 (291)
T 3mkr_A 148 LARKELKKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-------------------------PTLL 201 (291)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------------------------CCHH
T ss_pred HHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------------------------CcHH
Confidence 999999999999998 765444333 444456899999999999976322 2234
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChHHHH
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGD-AERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~ 392 (398)
++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+..+ +..+++++++++|+++.+..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 566699999999999999999999999999999999999999999999976 57899999999999987653
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.8e-26 Score=214.49 Aligned_cols=260 Identities=15% Similarity=0.057 Sum_probs=201.7
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE 170 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~ 170 (398)
+++++|+..|++++..+|++++.+.. ++.+ .| ...|+..|.+++.+. |.++.++..+|..+..
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~-~~~~~~~l~~~~~~~~al~~~~~al~l~---------p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSG-LAIASYRLDNWPPSQNAIDPLRQAIRLN---------PDNQYLKVLLALKLHK 221 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHH-HHHHHHHHHHSCCCCCTHHHHHHHHHHC---------SSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHhhcC---------CcchHHHHHHHHHHHH
Confidence 46889999999999999999988765 6655 24 678999999999999 9999999888876654
Q ss_pred ----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------
Q 015907 171 ----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL------- 239 (398)
Q Consensus 171 ----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------- 239 (398)
.|++++|+.+|++++..+|..+.++..+|.+|...|++++|+..++++++..|+++.++..+|.+|...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 567889999999999999999999999999999999999999999999999999999999999988653
Q ss_pred ------------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 240 ------------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 240 ------------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
+.++.|+..|++++.++|. +..++..+|.++...|++++|+.+|++++..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~----------------- 363 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK----------------- 363 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----------------
Confidence 3478899999999999999 8999999999999999999999999998662
Q ss_pred cccccccccCCCch---HHHHHHHH-HHhCCChHHHHHHHHHHHHh------------------------CCCChHHHHH
Q 015907 308 DKKETEPQKVDPIQ---VELLLGKA-YSDGGRVSDAVAVYDRLISS------------------------YPNDFRGYLA 359 (398)
Q Consensus 308 ~~~~~~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~------------------------~p~~~~~~~~ 359 (398)
...+.. ++..+|.+ +...|++++|+..|++++++ +|.++.++..
T Consensus 364 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 364 --------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred --------CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 222222 33446654 45789999999999988765 5667789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 360 KGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 360 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+|.+|..+|++++|+++|++|+++.|.+|.++..
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999999999998877643
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=1.3e-24 Score=189.98 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=200.6
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++.... ...|..+.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRA-----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhccc-----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 56 8999999999987631 11256788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+|+++++..|.++.++..+|.++...|++++|+.+|++++...|+ +......++.. ...|++++|+..+.++
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLA-EQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 77666655544 6679999999999888
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC----ChHHHHHHHHH
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN----DFRGYLAKGII 363 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~ 363 (398)
....+. ......++.++...++.++|+..+++++...|. +..++..+|.+
T Consensus 171 ~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 171 FEKSDK--------------------------EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHSCC--------------------------CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCc--------------------------chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 663321 122334888888899999999999999876664 36899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 364 LKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+...|++++|+.+|++++.++|++...+.
T Consensus 225 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 253 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVANNVHNFVEHR 253 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCchhHHHHH
Confidence 99999999999999999999998766554
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.93 E-value=1.4e-24 Score=204.73 Aligned_cols=216 Identities=11% Similarity=-0.004 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL-QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT 209 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 209 (398)
++.++..+....... |..+.+++.+|.++...|++ ++|+.+|+++++.+|+++.+|..+|.+|...|+++
T Consensus 84 ~~~al~~l~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA---------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHTTC---------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhccC---------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 788888888887777 89999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc------
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA------ 274 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~------ 274 (398)
+|+.+|+++++++|+ ..++..+|.++... |++++|+..|+++++++|+ +..+|..+|.++...
T Consensus 155 ~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 155 SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999 79999999999999 9999999999999999999 999999999999999
Q ss_pred --CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 275 --KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 275 --~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
|++++|+.+|+++++..+.. .....++..+|.+|...|++++|+..|+++++++|+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKA----------------------SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG----------------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHhCCCc----------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999997742200 022456777999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 353 DFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 353 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
+..++..++.++..+|++++|+..+.+
T Consensus 291 ~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 291 WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999986643
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=3.1e-24 Score=176.18 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
+++.+|+.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+...++++.|+..+.+++...|. +..++..+|.++...|++++|+..|+++++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------------------------ 137 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------------------------ 137 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------------------------
Confidence 99999999999999999999999 99999999999999999999999999997632
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
+....++..+|.+|..+|++++|+.+|+++++++|+++
T Consensus 138 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 138 -PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred -chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 22235667799999999999999999999999999764
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.93 E-value=3.5e-23 Score=181.02 Aligned_cols=233 Identities=13% Similarity=0.086 Sum_probs=208.2
Q ss_pred CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH----hccHHHHHHHHHHHH
Q 015907 114 APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE----KNVLQTRLKKYEETL 185 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l 185 (398)
.|+++..+.. +|.+ .| ++.|+.+|.+++. |.++.+++.+|.++.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~-lg~~~~~~~~~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVG-LGAKSYKEKDFTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHH-HHHHHHhCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 4667777766 7776 56 9999999999985 4566789999999999 999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC
Q 015907 186 SISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSK 257 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 257 (398)
+.+ ++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.+
T Consensus 70 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 144 (273)
T 1ouv_A 70 DLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 144 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence 985 89999999999999 999999999999999874 78999999999999 999999999999999975
Q ss_pred CCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHh-
Q 015907 258 DINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSD- 332 (398)
Q Consensus 258 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~- 332 (398)
++.++..+|.++.. .+++++|+.+|+++.+ ..+..++..+|.+|..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~---------------------------~~~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD---------------------------LKDSPGCFNAGNMYHHG 195 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------------------------TTCHHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------------------------CCCHHHHHHHHHHHHcC
Confidence 57899999999999 9999999999999855 3455778889999999
Q ss_pred ---CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 333 ---GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 333 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
.+++++|+.+|+++++..| +.+++.+|.+|.. .+++++|+.+|++++++.|+++..++..
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999865 8899999999999 9999999999999999999887776654
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=1e-23 Score=180.63 Aligned_cols=206 Identities=17% Similarity=0.177 Sum_probs=182.9
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|+..|.+++... |.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|+
T Consensus 36 ~~~~~~A~~~~~~~l~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN---------KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ------CCTTHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHHHHHHhC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 66 888999999999887 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+++++++..|.+..++..+|.++...|++++|+.++++++...|. +..++..+|.++...|++++|+.+++++
T Consensus 107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
+...+ ....++..+|.++...|++++|+.+|+++++.+|++..++..++.+....
T Consensus 186 ~~~~~-------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 186 TEQDP-------------------------GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHCT-------------------------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHhCc-------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 76322 22356667999999999999999999999999999999999988876655
Q ss_pred CC
Q 015907 368 GK 369 (398)
Q Consensus 368 g~ 369 (398)
|+
T Consensus 241 ~~ 242 (243)
T 2q7f_A 241 HH 242 (243)
T ss_dssp --
T ss_pred cC
Confidence 43
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.1e-23 Score=196.93 Aligned_cols=294 Identities=12% Similarity=0.023 Sum_probs=226.6
Q ss_pred HHHhHHHHHHhhcchhhc---------CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHH
Q 015907 96 LEQKKAEEIKEFGPIDYD---------APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVV 162 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~---------~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 162 (398)
..+++++|++.|++.+.. +|.....+.. +|.+ .| +++|..+|.+++.+...... ...+..+.++.
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n-la~~y~~~g~~~~A~~~~~ka~~i~~~~~~-~~~~~~~~~~~ 140 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN-YAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDC 140 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-SSCCCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHhHhccc-ccchhhHHHHH
Confidence 457889999999887653 4444445555 7776 78 99999999999987643332 12356678888
Q ss_pred HHHHHHHHh--ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 163 NKELSEEEK--NVLQTRLKKYEETLSISPKDSTALEGAAVTLA---ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 163 ~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
.+|.++... +++++|+.+|+++++++|+++.++..++.++. ..+++++|++.++++++++|+++.++..+|..+.
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 888877765 47999999999999999999999999998865 4578899999999999999999999999987766
Q ss_pred H----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCC-----chhhhcc----
Q 015907 238 E----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSD-----DLSVKDG---- 304 (398)
Q Consensus 238 ~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~---- 304 (398)
. .|++++|+.++++++..+|. ...++..+|.+|...|++++|+..|.++++..+..... .++...+
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 5 46788999999999999999 99999999999999999999999999998877765431 1110000
Q ss_pred ---------------ccc--cccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH---HHHHHHH
Q 015907 305 ---------------RSG--DKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR---GYLAKGI 362 (398)
Q Consensus 305 ---------------~~~--~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~ 362 (398)
... ...+.++...+|. .++..+|.+|...|++++|+.+|+++++..|++.. ++..+|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 000 0223344445554 45566999999999999999999999998887643 4566776
Q ss_pred HH-HHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 363 IL-KENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 363 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
++ ...|++++|+..|++++.++|++.....
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 54 5788999999999999999998876543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=8.2e-24 Score=184.77 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=200.8
Q ss_pred HhHHHHHHhhcchhhcC----CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH
Q 015907 98 QKKAEEIKEFGPIDYDA----PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~----p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~ 169 (398)
+++++|+..|++++... |..+..+.. +|.+ .| ++.|+..|.+++.+. |.++.++..+|.++.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYE-RGVLYDSLGLRALARNDFSQALAIR---------PDMPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHH-HHHHHHHcccHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHH
Confidence 45677888888888764 344555555 7776 77 999999999999998 999999999999999
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAY 249 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 249 (398)
..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+++++++..|++......++.+ ...|++++|+..+
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL 167 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776666544 6679999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC------chHH
Q 015907 250 RVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP------IQVE 323 (398)
Q Consensus 250 ~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 323 (398)
++++...|. +...+ .++.++...++.++|+..+.++. ...| ..++
T Consensus 168 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~---------------------------~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 168 KQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADA---------------------------TDNTSLAEHLSETN 218 (275)
T ss_dssp HHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHC---------------------------CSHHHHHHHHHHHH
T ss_pred HHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHh---------------------------cccccccccccHHH
Confidence 999999988 65554 47778888899999999998773 2333 2456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 324 LLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMF 377 (398)
Q Consensus 324 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 377 (398)
..+|.++...|++++|+.+|++++..+|++... .+.++..+|++++|+..+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 669999999999999999999999999987544 477889999999999887
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=8.8e-23 Score=181.80 Aligned_cols=222 Identities=10% Similarity=0.029 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-------hccH-------HHHHHHHHHHHh-cCCCCHHHHH
Q 015907 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE-------KNVL-------QTRLKKYEETLS-ISPKDSTALE 196 (398)
Q Consensus 132 ~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~~~~ 196 (398)
..|+..|++++... |.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|.
T Consensus 33 ~~a~~~~~~al~~~---------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHH
Confidence 67888999999999 9999999999988874 4775 999999999999 7999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH-c
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA-A 274 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~-~ 274 (398)
.+|.++...|++++|...|++++++.|.++. +|..+|.++...|++++|+..|+++++..|. ...+|...+.+... .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887 9999999999999999999999999999998 88888777666543 7
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHh---CC
Q 015907 275 KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISS---YP 351 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p 351 (398)
|++++|+.+|+++++..+. ...++..++.++...|++++|+.+|++++.. .|
T Consensus 183 ~~~~~A~~~~~~al~~~p~-------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGD-------------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred CCHHHHHHHHHHHHHhCCC-------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 9999999999999774332 2356666999999999999999999999995 55
Q ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 352 -NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 352 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
....+|..++..+...|++++|...++++++..|++.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 3678999999999999999999999999999999854
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=9.9e-23 Score=173.19 Aligned_cols=205 Identities=13% Similarity=0.103 Sum_probs=180.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP-KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINF-------EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|++++|+..|++++.++|+ ++ .++..+|.++...|++++|+..|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a------------------- 143 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA------------------- 143 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-------------------
Confidence 9999999999999999999999999 88 66999999999999999999999998
Q ss_pred ccccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 307 GDKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 307 ~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+..+|. .++..+|.+|... +...++++..+.+.....+ .+......+.+++|+.+|+++++
T Consensus 144 --------l~~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 144 --------TDVTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp --------TTSSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HhcCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666 4555699998654 4455677777777665443 44455667889999999999999
Q ss_pred hCCCChHHHHHh
Q 015907 383 FAPEKVKALVDQ 394 (398)
Q Consensus 383 ~~p~~~~~~~~l 394 (398)
++|+++.++..+
T Consensus 209 l~p~~~~~~~~l 220 (228)
T 4i17_A 209 LSPNRTEIKQMQ 220 (228)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 999998876654
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.92 E-value=1.2e-23 Score=185.44 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=195.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh-HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE-EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 206 (398)
.| +..|+..++.+.... |.. ......++.++...|+++.|+..++. .+|....++..++..+...+
T Consensus 12 ~g~y~~ai~~~~~~~~~~---------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS---------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS---------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHhcccCC---------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC
Confidence 78 999999888876555 666 35778889999999999999998865 25656778899999999999
Q ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 207 DYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 207 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
++++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |. ++.++..+|.++..+|++++|+..|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GD-SLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CC-SHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999986 699999999999999999999999999998 77 8999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHH----HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHH
Q 015907 285 LASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLG----KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAK 360 (398)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 360 (398)
+++.+ .+|......++ .++...|++++|+.+|+++++.+|+++.+++.+
T Consensus 154 ~~~~~---------------------------~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 154 KKMQD---------------------------QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp HHHHH---------------------------HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHh---------------------------hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99866 34555444433 344456999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 361 GIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 361 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
|.++..+|++++|+..|++++.++|++++++.++.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999998864
No 44
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=6.5e-24 Score=207.98 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=87.6
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.|+++.++.++|.++...|++++|+.+|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..+|.++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 36666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
.++..+|++++|++.|+++++++|+ +..++.++|.++..+|++++|+..|+++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666 666666666666555555555555555533
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=2.8e-24 Score=199.23 Aligned_cols=280 Identities=15% Similarity=0.064 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCC
Q 015907 85 EERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPT 156 (398)
Q Consensus 85 ~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~ 156 (398)
...+.........+++++|+..|++++...|+++. .+.. +|.+ .| ++.|+..|.+++.+.... ...|.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQ-LGNAYFYLGDYNKAMQYHKHDLTLAKSM---NDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHc---cCchH
Confidence 33344555556778999999999999999998764 3434 6666 78 999999999999873111 11277
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEGAAVTLAELGD-----------------YTRAVS 213 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 213 (398)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7889999999999999999999999999988 45567799999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----HHHHHHHHHHHHHcCCchHHHH
Q 015907 214 LLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N----FEVLRGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 214 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~~la~~~~~~~~~~~A~~ 282 (398)
++++++++. +....++..+|.++...|++++|+.+|++++.+.+.. + ..++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998864 2335689999999999999999999999999987641 1 2388999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHH
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRG 356 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 356 (398)
+|++++...+.... .......+..+|.++...|++++|+.+|++++.+.+.. ..+
T Consensus 285 ~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 285 HYKRTLALAVELGE-------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999886543211 00012455569999999999999999999999875432 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 357 YLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 357 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
+..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999988754
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.7e-23 Score=178.65 Aligned_cols=228 Identities=12% Similarity=0.023 Sum_probs=203.6
Q ss_pred HHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh-------HH
Q 015907 91 VRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE-------EA 159 (398)
Q Consensus 91 ~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~-------~~ 159 (398)
.......+++++|+..|++++... .++..+.. +|.+ .| ++.|+..|.+++.+. |.. +.
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~ 80 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNN-RAAAEYEKGEYETAISTLNDAVEQG---------REMRADYKVISK 80 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHH---------HHTTCCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHH-HHHHHHHcccHHHHHHHHHHHHHhC---------cccccchHHHHH
Confidence 334446788999999999999888 77777766 7777 77 999999999999988 554 78
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL 239 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 239 (398)
++..+|.++...|++++|+.+|++++...|. +.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 56788889999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|++++|+.+|++++..+|. ++.++..+|.++...|++++|+.++++++... .+.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------------~~~ 206 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------------------------PNF 206 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTC
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------------HHH
Confidence 9999999999999999999 99999999999999999999999999997632 222
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCChHHHHHHHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISSY------PNDFRGYLAKGII 363 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 363 (398)
..++..+|.++...|++++|+.+|++++++. |.+..++..++.+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4566779999999999999999999999999 8888888877765
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=197.30 Aligned_cols=275 Identities=14% Similarity=0.058 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHH
Q 015907 88 LAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEA 159 (398)
Q Consensus 88 l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~ 159 (398)
+.........+++++|+..|++++...|.++. .+.. +|.+ .| ++.|+..|.+++.+.... ...|....
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~ 88 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ-LGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHhc---cccHHHHH
Confidence 44455566788999999999999999998754 3334 6666 77 999999999998774221 12256678
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGD--------------------YTRAVS 213 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~ 213 (398)
++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999886543 4589999999999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHHcCCchHHH
Q 015907 214 LLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN------FEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 214 ~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~la~~~~~~~~~~~A~ 281 (398)
++++++.+. |....++..+|.++...|++++|+.++++++.+.|. . ..++..+|.++...|++++|+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999998862 333568999999999999999999999999988654 3 238899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FR 355 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 355 (398)
.++++++...+.... ......++..+|.++...|++++|+.+|++++++.+.. ..
T Consensus 248 ~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 248 EYYKKTLLLARQLKD-------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcC-------------------chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 999999876543211 00002355569999999999999999999999875543 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 356 GYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 356 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++..+|.+|...|++++|+.+|++++++.+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999987543
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=3.2e-23 Score=195.49 Aligned_cols=198 Identities=20% Similarity=0.175 Sum_probs=184.4
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY-TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA 248 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 248 (398)
..+.+++++..+++.....|.++.+++.+|.++...|++ ++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345688899999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHc---------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 249 YRVSTMVSKDINFEVLRGLTNALLAA---------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 249 ~~~al~~~p~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|+++++++|+ ..++..+|.++... |++++|+.+|+++++.. .+.
T Consensus 160 ~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~ 212 (474)
T 4abn_A 160 FSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------------------------VLD 212 (474)
T ss_dssp HHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------------------------TTC
T ss_pred HHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------------------------CCC
Confidence 9999999997 69999999999999 99999999999997732 222
Q ss_pred chHHHHHHHHHHhC--------CChHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 320 IQVELLLGKAYSDG--------GRVSDAVAVYDRLISSYP---NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 320 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
..++..+|.+|... |++++|+.+|+++++++| +++.+|+++|.+|..+|++++|+..|+++++++|+++
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45677799999999 999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 015907 389 KALVDQ 394 (398)
Q Consensus 389 ~~~~~l 394 (398)
.++.++
T Consensus 293 ~a~~~l 298 (474)
T 4abn_A 293 EPQQRE 298 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=6.6e-24 Score=190.33 Aligned_cols=279 Identities=14% Similarity=0.066 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchh----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETE----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE 157 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~ 157 (398)
..+.........+++++|+..|++++...|.++. .+.. +|.+ .| ++.|+..+.+++.+.... ...|..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQ-LGNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhhcc---cccHHH
Confidence 3344455566788999999999999999998753 3333 6665 77 999999999998773111 112566
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHH
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGD--------------------YTRA 211 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A 211 (398)
..++..+|.++...|++++|+.+|++++...|.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 7889999999999999999999999999876543 3489999999999999 9999
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHH
Q 015907 212 VSLLQDLAKEK------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEA 280 (398)
Q Consensus 212 ~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A 280 (398)
+.++++++.+. +....++..+|.++...|++++|+.++++++.+.+.. ...++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998762 2335688999999999999999999999999875431 133889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------h
Q 015907 281 VQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------F 354 (398)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 354 (398)
+.++++++...+.... .......+..+|.++...|++++|+.++++++...+.. .
T Consensus 243 ~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKD-------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhcc-------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999999876543211 00002345559999999999999999999999875543 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 355 RGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 355 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++..+|.+|...|++++|..++++++.+.+..
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 588999999999999999999999999988764
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.3e-23 Score=203.03 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=163.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
..|++++++.++|.+|..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+.+|+++++++|+ +..++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.++..+|++++|+..|++++++. .+...++.++|.+|..+|++++|+..|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-------------------------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-------------------------PAFADAHSNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999997632 222467777999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 347 ISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 347 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
++++|+++.++.++|.++..+|++++|++.+++++++.|+.
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999999999999999999999999887653
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=2.5e-22 Score=173.23 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=185.2
Q ss_pred hhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH
Q 015907 119 EKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA 194 (398)
Q Consensus 119 ~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 194 (398)
..+.. +|.+ .| ++.|+..|.+++... |.+..++..+|.++...|++++|+..|+++++.+|.+..+
T Consensus 38 ~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 107 (252)
T 2ho1_A 38 DAYIQ-LGLGYLQRGNTEQAKVPLRKALEID---------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107 (252)
T ss_dssp HHHHH-HHHHHHHTTCTGGGHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHH-HHHHHHHcCChHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH
Confidence 33433 5555 66 889999999999888 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 195 LEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 195 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
+..+|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.+|++++...|. +..++..+|.++.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH
Confidence 99999999999999999999999999 88888999999999999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
..|++++|+.++++++.. .......+..++.++...|++++|..+++++++..|+
T Consensus 187 ~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQG-------------------------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HTTCHHHHHHHHHHHHTT-------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHh-------------------------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999988542 1222345666999999999999999999999999999
Q ss_pred ChHHHHHH
Q 015907 353 DFRGYLAK 360 (398)
Q Consensus 353 ~~~~~~~l 360 (398)
++.++..+
T Consensus 242 ~~~~~~~l 249 (252)
T 2ho1_A 242 SLEYQEFQ 249 (252)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 98776543
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.1e-22 Score=181.08 Aligned_cols=247 Identities=11% Similarity=0.019 Sum_probs=211.1
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh-h---------c-H-------HHHHHHHHHHHh-ccCCCCCCCCCCChHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK-I---------G-V-------GVAVVIFGLVFA-LGDFLPSGSVSPTEEAGV 161 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~-~---------g-~-------~~A~~~~~~a~~-~~~~~~~~~~~p~~~~~~ 161 (398)
.+|+..|++++..+|.+++.|.. +|.. . | . ++|...|++++. +. |.+..+|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---------p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYE-AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---------KKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---------cccHHHH
Confidence 57889999999999999999877 6655 1 5 4 899999999998 68 9999999
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-L 239 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~ 239 (398)
..+|..+...|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....+|...+.+... .
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987 999999999999999999999999999999998888777666443 7
Q ss_pred cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC
Q 015907 240 KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP 319 (398)
Q Consensus 240 g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
|++++|+.+|+++++..|+ ++.+|..++.++...|++++|+.+|++++... ...|
T Consensus 183 ~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------~l~p 237 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG------------------------SLPP 237 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS------------------------SSCG
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc------------------------CCCH
Confidence 9999999999999999999 99999999999999999999999999997621 1223
Q ss_pred ---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHh
Q 015907 320 ---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 320 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 394 (398)
..++..++..+...|++++|..+++++++..|++..... ++.+ ....+.+.++|+++++++.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~-----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL-----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-----------HTTTCBTTBCSSCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-----------HHHHHhcccCCCCHHHHHhc
Confidence 246666889999999999999999999999998654331 1222 11125677899999987653
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=6.9e-22 Score=166.96 Aligned_cols=212 Identities=13% Similarity=0.034 Sum_probs=190.6
Q ss_pred CCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 114 APIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 114 ~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
.|.++..+.. +|.+ .| ++.|+..|.+++... |.+..++..+|.++...|++++|+.+|++++...|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 4 ANQVSNIKTQ-LAMEYMRGQDYRQATASIEDALKSD---------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp CCHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC---------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 4556666655 6666 67 999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 190 KDSTALEGAAVTLAEL-GDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
.+..++..+|.++... |++++|+.+++++++ ..|....++..+|.++...|++++|+.+|++++...|. +..++..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 152 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKE 152 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHH
Confidence 9999999999999999 999999999999999 66777899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.++...|++++|+.++++++...+. .....+..++.++...|++++|..+++.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEV------------------------LQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCS------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999998774320 22345556888999999999999999999
Q ss_pred HHhCCCChHHHHHH
Q 015907 347 ISSYPNDFRGYLAK 360 (398)
Q Consensus 347 l~~~p~~~~~~~~l 360 (398)
+...|+++.+...+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999998876554
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=3.3e-21 Score=168.40 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=183.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ ++.+++
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 78889999999999999999999999999999 7889999999999999 999999999999999985 789999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhh
Q 015907 231 LLGEVKYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVK 302 (398)
Q Consensus 231 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 302 (398)
.+|.++.. .+++++|+.+|++++..+ ++.++..+|.+|.. .+++++|+.+|+++.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~------------- 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD------------- 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-------------
Confidence 99999999 999999999999999874 78999999999999 9999999999999855
Q ss_pred ccccccccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 015907 303 DGRSGDKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAE 374 (398)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 374 (398)
..+..++..+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+
T Consensus 143 --------------~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 143 --------------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp --------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred --------------cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3456778889999998 99999999999999986 468999999999999 99999999
Q ss_pred HHHHHHHhhCCCChHHHHH
Q 015907 375 RMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 375 ~~~~~al~~~p~~~~~~~~ 393 (398)
.+|+++++..| +.++.+
T Consensus 207 ~~~~~a~~~~~--~~a~~~ 223 (273)
T 1ouv_A 207 ARYSKACELEN--GGGCFN 223 (273)
T ss_dssp HHHHHHHHTTC--HHHHHH
T ss_pred HHHHHHHhCCC--HHHHHH
Confidence 99999999876 555544
No 55
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=4.6e-22 Score=172.73 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=173.8
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PD 227 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 227 (398)
.|.++..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.+|...|++++|+..|+++++..|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 38889999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCCHHHH-----------------HHHHHHHHHcCCchHHHH
Q 015907 228 VFRLLGEVKYE--------LKDYEGSAAAYRVSTMVSKDINFEVL-----------------RGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 228 ~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~-----------------~~la~~~~~~~~~~~A~~ 282 (398)
+++.+|.++.. .|++++|+..|++++...|+ +..+. +.+|.+|...|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999 99999999999999999998 65554 888999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC----------CChHHHHHHHHHHHHhCCC
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG----------GRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~ 352 (398)
.|++++...+.. .....+++.+|.+|..+ |++++|+..|+++++.+|+
T Consensus 170 ~~~~~l~~~p~~----------------------~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 170 TYEAVFDAYPDT----------------------PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHCTTS----------------------TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCC----------------------chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 999997754422 11235677799999877 8999999999999999999
Q ss_pred Ch---HHHHHHHHHHHHcCCHHHHH
Q 015907 353 DF---RGYLAKGIILKENGKVGDAE 374 (398)
Q Consensus 353 ~~---~~~~~la~~~~~~g~~~~A~ 374 (398)
++ .+...++.++..+++++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 85 56667787877777765543
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=3.8e-21 Score=163.33 Aligned_cols=209 Identities=11% Similarity=0.101 Sum_probs=177.7
Q ss_pred CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCC-ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Q 015907 115 PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSP-TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP 189 (398)
Q Consensus 115 p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 189 (398)
+.+++.+.. .|.+ .| ++.|+..|.+++.+. | .+..+++.+|.++...|++++|+.+|++++..+|
T Consensus 4 ~~~~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 73 (228)
T 4i17_A 4 TTDPNQLKN-EGNDALNAKNYAVAFEKYSEYLKLT---------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY 73 (228)
T ss_dssp CCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT---------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcc---------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc
Confidence 344555555 6766 67 999999999999998 7 8889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NF 261 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~ 261 (398)
+++.++..+|.+|..+|++++|+..+++++++.|+++ .++..+|.++...|++++|+..|+++++++|+. ++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccH
Confidence 9999999999999999999999999999999999998 669999999999999999999999999999861 25
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHH
Q 015907 262 EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVA 341 (398)
Q Consensus 262 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 341 (398)
.++..+|.++...|+ ..+.++.. ..+.......+......+.+++|+.
T Consensus 154 ~~~~~l~~~~~~~~~-----~~~~~a~~---------------------------~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 154 DALYSLGVLFYNNGA-----DVLRKATP---------------------------LASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHGG---------------------------GTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHh---------------------------cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999977653 33444422 2223333445555666778999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHH
Q 015907 342 VYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 342 ~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
+|+++++++|++..+...++.+..
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999988887754
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=177.08 Aligned_cols=216 Identities=17% Similarity=0.179 Sum_probs=185.6
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
....|....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445888899999999999999999999999999994 56677899999999999999999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 223 --------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--------KDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 223 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
|....++..+|.++...|++++|+.+|++++.+. |. ...++..+|.++...|++++|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556789999999999999999999999999874 44 567899999999999999999999999
Q ss_pred HHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh---------------
Q 015907 287 SRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS--------------- 349 (398)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------- 349 (398)
++........ ...|. .++..+|.+|...|++++|+.+|+++++.
T Consensus 179 a~~~~~~~~~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 179 ALEIYQTKLG-------------------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHHHTSC-------------------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHHHhC-------------------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 9875432200 11233 34555999999999999999999999974
Q ss_pred ----------------------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 350 ----------------------------------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 350 ----------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3556788999999999999999999999999999875
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=2.8e-22 Score=185.68 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=197.4
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChH----HHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEE----AGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~ 197 (398)
.| ++.|+..|++++.+. |.++ .++..+|.++...|++++|+.+|++++.. .|....++..
T Consensus 61 ~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAG---------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp TTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhc---------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 67 999999999999987 7765 58899999999999999999999999987 4666789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHh
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKD-----------------YEGSAAAYRVSTM 254 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~ 254 (398)
+|.+|...|++++|+.++++++++ .|....++..+|.++...|+ +++|+.++++++.
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 45556789999999999999 9999999999988
Q ss_pred hCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHH
Q 015907 255 VSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKA 329 (398)
Q Consensus 255 ~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 329 (398)
+.+. ....++..+|.++...|++++|+.++++++...+.... .......+..+|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD-------------------RAAERRANSNLGNS 272 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-------------------cHHHHHHHHHHHHH
Confidence 6421 13458899999999999999999999999876542200 00001256669999
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 330 YSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
|...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+.++
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987754 678999999999999999999999999988654
No 59
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.88 E-value=4.3e-22 Score=195.87 Aligned_cols=187 Identities=17% Similarity=0.101 Sum_probs=169.0
Q ss_pred CCCChHHHHHHHHHHHHHhccHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015907 153 VSPTEEAGVVNKELSEEEKNVLQTRLKKYEETL--------SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS 224 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 224 (398)
..|.++.+++..+ ...|++++|+..|++++ +.+|++..++..+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3477777777666 67899999999999999 899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 225 DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 225 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
+..+|+.+|.++...|++++|+..|+++++++|+ +..++.++|.++...|++++ +..|+++++..
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------------- 530 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------------- 530 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------------
Confidence 9999999999999999999999999999999999 99999999999999999999 99999997632
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 015907 305 RSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGK 369 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 369 (398)
.+...+++++|.++...|++++|+..|+++++++|++..+++++|.++...++
T Consensus 531 ------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 ------------DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred ------------CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 22245777799999999999999999999999999999999999999987666
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=6.2e-22 Score=182.65 Aligned_cols=234 Identities=15% Similarity=0.052 Sum_probs=198.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCCh----HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCC
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTE----EAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPK 190 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~ 190 (398)
.|.. .| ++.|+.+|++++.+. |.+ ..++..+|.++...|++++|+.+|++++.. .|.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4544 77 999999999999987 666 468899999999999999999999999876 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKD--------------------YEG 244 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 244 (398)
...++..+|.++...|++++|+.++++++++.|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46789999999999999999999999999986543 4589999999999999 999
Q ss_pred HHHHHHHHHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC
Q 015907 245 SAAAYRVSTMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD 318 (398)
Q Consensus 245 A~~~~~~al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (398)
|+.++++++.+. |. ...++..+|.++...|++++|+.++++++...+..+. ...
T Consensus 166 A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~ 225 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------KAA 225 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC-------------------HHH
T ss_pred HHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC-------------------cHH
Confidence 999999998872 22 3568899999999999999999999999886553311 000
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
...++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 01255669999999999999999999999887665 6789999999999999999999999999886544
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=8.5e-22 Score=173.99 Aligned_cols=211 Identities=11% Similarity=-0.019 Sum_probs=168.1
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSISPK------DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLL 232 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 232 (398)
|.++...|++++|+.+|++++.+.+. ...++..+|.+|..+|++++|+.+|++++++.|.. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56788899999999999999987532 25689999999999999999999999999987643 4688999
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHhhCCCC-C----HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 233 GEVKYEL-KDYEGSAAAYRVSTMVSKDI-N----FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 233 a~~~~~~-g~~~~A~~~~~~al~~~p~~-~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
|.+|... |++++|+.+|++++.+.|.. + ..++..+|.++..+|++++|+.+|++++...+..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 193 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL---------- 193 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT----------
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc----------
Confidence 9999996 99999999999999998751 1 467899999999999999999999999875443211
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH--HcCCHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----GYLAKGIILK--ENGKVGDAERMFIQ 379 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~ 379 (398)
........+..+|.++..+|++++|+.+|+++++++|.... .+..++..+. ..+++++|+..|.+
T Consensus 194 --------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 194 --------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred --------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 00000124566999999999999999999999999998754 3455666664 45789999999999
Q ss_pred HHhhCCCChHHHHH
Q 015907 380 ARFFAPEKVKALVD 393 (398)
Q Consensus 380 al~~~p~~~~~~~~ 393 (398)
++.++|....++..
T Consensus 266 ~~~l~~~~~~~~~~ 279 (292)
T 1qqe_A 266 FMRLDKWKITILNK 279 (292)
T ss_dssp SSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 99999987766654
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.88 E-value=7.2e-21 Score=165.20 Aligned_cols=199 Identities=11% Similarity=0.094 Sum_probs=163.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 015907 185 LSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-- 259 (398)
Q Consensus 185 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 259 (398)
....|.++..++.+|..+...|++++|+..|+++++..|++ +.+++.+|.++...|++++|+..|++++...|+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45678899999999999999999999999999999999998 8999999999999999999999999999998851
Q ss_pred CHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHH
Q 015907 260 NFEVLRGLTNALLA--------AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYS 331 (398)
Q Consensus 260 ~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 331 (398)
.+.+++.+|.++.. .|++++|+..|++++...+..+....... ... .........++.+|.+|.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--~~~------~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--KIR------ELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--HHH------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--HHH------HHHHHHHHHHHHHHHHHH
Confidence 36789999999999 99999999999999886654422000000 000 000000011267999999
Q ss_pred hCCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCChHHH
Q 015907 332 DGGRVSDAVAVYDRLISSYPND---FRGYLAKGIILKEN----------GKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 332 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
..|++++|+..|+++++..|++ +.+++.+|.+|..+ |++++|+..|+++++.+|+++.+.
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 9999999999999999999984 67999999999977 999999999999999999996543
No 63
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=2e-21 Score=162.66 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG----------------AAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 220 (398)
.+..++..|..+...|++++|+.+|++++..+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35568889999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHhcCCCCCc
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKP--DEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~ 298 (398)
++|+++.++..+|.++...|++++|+.+|+++++++|+ ++.+++.+|.+|...|+. ..+...+.++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~----------- 150 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL----------- 150 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999 999999999999776643 3445555443
Q ss_pred hhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGII 363 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 363 (398)
....|. ..++.+|.++...|++++|+.+|+++++++|+. .+...+..+
T Consensus 151 ----------------~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 151 ----------------SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred ----------------hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 223332 245568888888999999999999999999964 333444443
No 64
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=3.8e-20 Score=162.35 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc
Q 015907 132 GVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN--VLQTRLKKYEETLSISPKDSTALEGAAVTL----AEL 205 (398)
Q Consensus 132 ~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~ 205 (398)
++|+..+.+++.++ |.+..+|+.++.++...| ++++++.++..++..+|++..+|...+.++ ...
T Consensus 50 ~~aL~~t~~~L~~n---------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 50 ERALHITELGINEL---------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC---------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 45666677777777 777777777887777777 888888888888888888888888888777 666
Q ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC----
Q 015907 206 ---GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE--GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK---- 276 (398)
Q Consensus 206 ---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~---- 276 (398)
+++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|. +..+|...+.++...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 67888888888888888888888888888888888777 888888888888887 88888888888877776
Q ss_pred --chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHH-HHHHHHHHHHhC---
Q 015907 277 --PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSD-AVAVYDRLISSY--- 350 (398)
Q Consensus 277 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~--- 350 (398)
++++++++.+++.. .+....+|.+++.++...|+..+ ...++.+++++.
T Consensus 200 ~~~~eEl~~~~~aI~~-------------------------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK-------------------------CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHHHHHHHHHHHHHHH-------------------------CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred hhHHHHHHHHHHHHHh-------------------------CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 77788887777552 22223566667777777777444 445666666655
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHh
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERMFIQARF-FAPEKVKALVDQ 394 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l 394 (398)
|.++.++..++.+|.+.|+.++|+++|+.+.+ .+|-....|.-+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 77788888888888888888888888888886 688887777654
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=1.9e-21 Score=178.62 Aligned_cols=231 Identities=12% Similarity=0.014 Sum_probs=192.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC-------HHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD-------STALEGAAV 200 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~ 200 (398)
.| ++.|+..|.+++.+.... ...+..+.+++.+|.++...|++++|+.+++++++..+.. ..++..+|.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFV---KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 67 999999999999774221 1224567899999999999999999999999999875433 458999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCCHHHHHHHH
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTM-----VS-KDINFEVLRGLT 268 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~~la 268 (398)
+|..+|++++|+.++++++++.+.. ..++.++|.+|..+|++++|+.+|++++. .+ |. ...++..+|
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~ 271 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-LPQAYFLIT 271 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHH
Confidence 9999999999999999999875533 25899999999999999999999999999 45 66 788999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCC---hHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGR---VSDAVAVY 343 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~---~~~A~~~~ 343 (398)
.++...|++++|+.++++++...+.. .+|.. .+..+|.++...|+ +.+|+.++
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKA----------------------GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH----------------------TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999998765422 12221 23349999999999 88888888
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
++. ...|....++..+|.+|...|++++|..+|++++.+...
T Consensus 330 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 330 ESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 876 334445678999999999999999999999999987543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.9e-21 Score=174.31 Aligned_cols=229 Identities=15% Similarity=0.048 Sum_probs=194.3
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh----HHHHHHHHHHHHHhccHHHHHHHHHHHHhc------CCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE----EAGVVNKELSEEEKNVLQTRLKKYEETLSI------SPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~ 197 (398)
.| ++.|+..|++++... |.+ ..++..+|.++...|++++|+.++++++.. .|....++..
T Consensus 18 ~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC---------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 67 999999999999987 666 468889999999999999999999999877 3445678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKD--------------------YEGSAAAYRV 251 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~~~~~~ 251 (398)
+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+ +++|+.++++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999876543 3488999999999999 9999999999
Q ss_pred HHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH
Q 015907 252 STMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL 325 (398)
Q Consensus 252 al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
++.+. +. ...++..+|.++...|++++|+.++++++...+.... .......+..
T Consensus 169 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~ 228 (338)
T 3ro2_A 169 NLSLVTALGDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------KAAERRAYSN 228 (338)
T ss_dssp HHHHHHHHTCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHH
T ss_pred HHHHHHhcCCHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-------------------hHHHHHHHHH
Confidence 98762 22 3558899999999999999999999999876542210 0001125566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.|.
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876655 678999999999999999999999999987654
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=2.8e-20 Score=151.87 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccccc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQK 316 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (398)
...|++++|+.++++++...|. +..++..+|.++...|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~---------------------------------------- 125 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGR---------------------------------------- 125 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC----------------------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCc----------------------------------------
Confidence 6666666666666666666665 55555555555555444
Q ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 317 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+++|+.+++++++..|.++.++..+|.++...|++++|+.++++++.++|++.
T Consensus 126 -------------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 126 -------------------FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -------------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 45555555555555566666666666666666666666666666666666554
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=1.7e-20 Score=184.46 Aligned_cols=188 Identities=11% Similarity=-0.019 Sum_probs=168.4
Q ss_pred chhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHH--------hccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHH
Q 015907 109 PIDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVF--------ALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLK 179 (398)
Q Consensus 109 ~~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~--------~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 179 (398)
.+...+|+++..... .+...| +++|+..|.+++ ... |.+..+++.+|.++...|++++|+.
T Consensus 385 ~~p~~~p~~~~a~~~-~a~~~~~~~~A~~~~~~al~~~~~~~~~~~---------p~~~~~~~~~a~~~~~~g~~~~A~~ 454 (681)
T 2pzi_A 385 SVPLVDPTDVAASVL-QATVLSQPVQTLDSLRAARHGALDADGVDF---------SESVELPLMEVRALLDLGDVAKATR 454 (681)
T ss_dssp CCBCCCTTSTTHHHH-HHTTTCCHHHHHHHHHHHHTC-------CC---------TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCccCCCCCcchHHh-hcccccCHHHHHHHHHHhhhhccccccccc---------ccchhHHHHHHHHHHhcCCHHHHHH
Confidence 344667888877766 665588 999999999999 666 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 180 KYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 180 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
.|+++++.+|++..+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|+
T Consensus 455 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~- 532 (681)
T 2pzi_A 455 KLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG- 532 (681)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCch--HHHHHHHHHHhCCC
Q 015907 260 NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQ--VELLLGKAYSDGGR 335 (398)
Q Consensus 260 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~ 335 (398)
+..+++++|.++...|++++|+..|+++ +..+|.+ ++.++|.++...++
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a---------------------------l~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEV---------------------------PPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS---------------------------CTTSTTHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhh---------------------------cccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999887 5566664 55568988877666
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.86 E-value=4.3e-20 Score=150.81 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=135.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 015907 149 PSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 149 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 228 (398)
......|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.++++++...|.++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 33 QVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp TTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 33445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+..+|.++...|++++|+.++++++...|. ++.++..+|.++...|++++|+.++++++...+
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999 999999999999999999999999999877544
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=3.5e-21 Score=152.30 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDY 242 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 242 (398)
.+|.++...|++++|+..+++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH-HHHHHH
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF-LLASRE 289 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~-~~~a~~ 289 (398)
++|+.+|+++++++|+ ++.++..+|.++...|++++|... ++++++
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999 899999999999888888776654 456644
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.85 E-value=8.9e-20 Score=154.62 Aligned_cols=190 Identities=8% Similarity=0.070 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD---VFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 230 (398)
.+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.+|...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356789999999999999999999999999998874 78999999999999999999999999999998864 788
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 231 LLGEVKYE------------------LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 231 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
.+|.++.. .|++++|+..|+++++..|+ +..++..+..+... ...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~----------~~~------ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFL----------KDR------ 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHH----------HHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHH----------HHH------
Confidence 99999886 46788888888888888888 65544322211100 000
Q ss_pred CCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCC
Q 015907 293 TGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF---RGYLAKGIILKENGK 369 (398)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 369 (398)
.......+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|+
T Consensus 146 --------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 146 --------------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred --------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 012335689999999999999999999999999986 689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChH
Q 015907 370 VGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 370 ~~~A~~~~~~al~~~p~~~~ 389 (398)
+++|+..++++....|++.+
T Consensus 200 ~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHhhCCCchh
Confidence 99999999999999888643
No 72
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=1.5e-20 Score=148.65 Aligned_cols=142 Identities=11% Similarity=-0.008 Sum_probs=131.8
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
||.+ .| ++.|+..+..++... |..+..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4555 67 999999999999888 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-HHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAA-YRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
+|...|++++|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+ ++.++..++.++...|+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999887766 5999999999 99999999999988875
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1e-18 Score=167.51 Aligned_cols=179 Identities=9% Similarity=-0.011 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHh-hCCCCCHHHHHHHHHHHHHc
Q 015907 210 RAVSLLQDLAKEKPSDPDVFRLLGEVKYE-------LKDYE-------GSAAAYRVSTM-VSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 210 ~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~~la~~~~~~ 274 (398)
.++..|++++...|.++.+|..+|..+.. .|+++ +|+..|++++. ..|+ +..+|..++.++...
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhc
Confidence 56678888888888888888888888876 68876 88888888887 7888 888888888888888
Q ss_pred CCchHHHHHHHHHHHHhcCCCC------Cchhhhcccccc--ccccccccCCCchHHHH--HHHH-HHhCCChHHHHHHH
Q 015907 275 KKPDEAVQFLLASRERLSTGKS------DDLSVKDGRSGD--KKETEPQKVDPIQVELL--LGKA-YSDGGRVSDAVAVY 343 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--la~~-~~~~g~~~~A~~~~ 343 (398)
|++++|...|++++...+..+. +.+....++... ..+.+++...|.....+ .+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 8888888888888775444321 111111222222 33445555555544333 3333 34689999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 344 DRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 344 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
+++++..|+++.+|..++.++...|+.++|..+|++++...|.++.
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9999999999999999999999999999999999999998776654
No 74
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.6e-18 Score=164.49 Aligned_cols=275 Identities=13% Similarity=0.018 Sum_probs=200.3
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh-------hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK-------IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~-------~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.++.++|+..|+++... +++..... +|.+ .+ .+.|+.+|.+++.. .++.+++.+|.++
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GRDSGQQS-MGDAYFEGDGVTRDYVMAREWYSKAAEQ-----------GNVWSCNQLGYMY 193 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 57788888888887654 34555544 5554 34 88888888888753 3467788888888
Q ss_pred HH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 015907 169 EE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-- 238 (398)
Q Consensus 169 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 238 (398)
.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCC
Confidence 87 78888888888888764 467788888888876 77888888888887765 456777888888877
Q ss_pred --ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHhcCCCC---Cchhhhcc---c
Q 015907 239 --LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA-----KKPDEAVQFLLASRERLSTGKS---DDLSVKDG---R 305 (398)
Q Consensus 239 --~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~---~ 305 (398)
.+++++|+.+|+++.+. . ++.+++.+|.+|... +++++|+.+|+++.+....... +.+....+ +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~--~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQ--G-NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTT--T-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc
Confidence 77888888888887765 3 677788888888777 7888888888777653111000 11111111 1
Q ss_pred ccc--ccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHH
Q 015907 306 SGD--KKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAER 375 (398)
Q Consensus 306 ~~~--~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 375 (398)
... ..+.++.......+++.+|.+|.. .+++++|+.+|+++++. .++.+++++|.+|.. .+++++|+.
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 111 223444445566788889999999 89999999999999885 468999999999998 899999999
Q ss_pred HHHHHHhhCCC---ChHHHHHh
Q 015907 376 MFIQARFFAPE---KVKALVDQ 394 (398)
Q Consensus 376 ~~~~al~~~p~---~~~~~~~l 394 (398)
+|+++++..|+ ++.++.++
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l 446 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITE 446 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCCHHHHHHH
Confidence 99999999954 77766654
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=1.6e-18 Score=152.05 Aligned_cols=251 Identities=10% Similarity=-0.045 Sum_probs=213.3
Q ss_pred CchhHHHHHHHHHHHHHHHhH-HHHHHhhcchhhcCCCchhhhhhhcchh----h-c-HHHHHHHHHHHHhccCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQKK-AEEIKEFGPIDYDAPIETEKKTIGLGTK----I-G-VGVAVVIFGLVFALGDFLPSGS 152 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~-~eA~~~~~~~~~~~p~~~~~~~~~lg~~----~-g-~~~A~~~~~~a~~~~~~~~~~~ 152 (398)
...+|.+.....+.....+.+ ++|+.++..++..+|++..+|.. .|.+ . . +++++.++..++..+
T Consensus 28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~-R~~~L~~l~~~~~~eeL~~~~~~L~~n------- 99 (306)
T 3dra_A 28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIY-RFNILKNLPNRNLYDELDWCEEIALDN------- 99 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHC-------
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHH-HHHHHHHcccccHHHHHHHHHHHHHHC-------
Confidence 355666655555555555544 68999999999999999999988 6766 3 4 899999999999999
Q ss_pred CCCChHHHHHHHHHHH----HHh---ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCC
Q 015907 153 VSPTEEAGVVNKELSE----EEK---NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT--RAVSLLQDLAKEKP 223 (398)
Q Consensus 153 ~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p 223 (398)
|.+..+|..++.++ ... +++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|
T Consensus 100 --Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 100 --EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred --cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 99999999999999 666 78999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHccC------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHH-HHHHHHHHhcCCCC
Q 015907 224 SDPDVFRLLGEVKYELKD------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQ-FLLASRERLSTGKS 296 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~ 296 (398)
.+..+|...+.++...+. ++++++++.+++..+|. +..+|+.++.++...|+..+++. +..++.....
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~---- 252 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK---- 252 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG----
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC----
Confidence 999999999999999887 99999999999999999 99999999999999998766554 4433311000
Q ss_pred CchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH-hCCCChHHHHHHHHH
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS-SYPNDFRGYLAKGII 363 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~ 363 (398)
.......++..++.+|.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 253 ------------------~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 253 ------------------DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp ------------------TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred ------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 0122335666799999999999999999999997 799999988877754
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=1.6e-20 Score=164.13 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=168.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE----- 221 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 221 (398)
|..+.++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 667889999999999999999999999999987 3555779999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 222 ---KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 222 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
+|....++..+|.++...|++++|+.+|++++.+ .|. ...++..+|.++...|++++|+.++++++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN-VAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666789999999999999999999999999998 565 6778999999999999999999999999876
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh------HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV------SDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
.+..... .........+..++..+...+.. .++...++......|....++..+|.+|
T Consensus 199 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 199 AHEKEFG----------------SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp HHHHHSS----------------SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCC----------------CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4422100 01122234555566666655443 3344444443334456678999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC
Q 015907 365 KENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 365 ~~~g~~~~A~~~~~~al~~~ 384 (398)
..+|++++|+.+|++++++.
T Consensus 263 ~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=3.1e-20 Score=170.55 Aligned_cols=266 Identities=6% Similarity=-0.018 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCC---chhhhhhhcchh-------hc-HHHHH-----------HHHH
Q 015907 82 INFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPI---ETEKKTIGLGTK-------IG-VGVAV-----------VIFG 139 (398)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~---~~~~~~~~lg~~-------~g-~~~A~-----------~~~~ 139 (398)
......+.........++.++|..++.++...-+. +.+.... ..++ .+ ...+. ..+.
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y-~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLY-YSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 45667788888888999999999999887553322 2222211 1111 22 33333 4444
Q ss_pred HHHhccCCCCCCCCCCChHH------HHHHHHHHHHHhccHHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHcCC
Q 015907 140 LVFALGDFLPSGSVSPTEEA------GVVNKELSEEEKNVLQTRLKKYEETLSI---SPK---DSTALEGAAVTLAELGD 207 (398)
Q Consensus 140 ~a~~~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~ 207 (398)
.+-. . |.... .++.+|..+...|++++|+.+|++++.+ .++ .+.++..+|.+|...|+
T Consensus 89 ~i~~-~---------~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 89 EIDK-K---------QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ 158 (383)
T ss_dssp HHHH-H---------THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHh-c---------CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4321 1 33322 3445999999999999999999999987 233 45789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcC
Q 015907 208 YTRAVSLLQDLAKEKPSD-------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAK 275 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~ 275 (398)
+++|+.++++++++.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ...++.++|.+|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 999999999999985433 4589999999999999999999999999886541 1248899999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC-Cc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC--
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD-PI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY-- 350 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 350 (398)
++++|+.++++++...... .+ |. .++..+|.+|...|++++|+.++++++++.
T Consensus 239 ~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 296 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEES----------------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK 296 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHT----------------------TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh----------------------ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999998865422 12 33 456669999999999999999999999874
Q ss_pred ---CCChHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 015907 351 ---PNDFRGYLAKGIILKENGK---VGDAERMFIQA 380 (398)
Q Consensus 351 ---p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 380 (398)
|.....+..+|.++...|+ +.+|+..+++.
T Consensus 297 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 297 AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3334446789999999999 78888887765
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=7e-19 Score=168.55 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHH-------hccHH-------HHHHHHHHHHh-cCCCCHHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEE-------KNVLQ-------TRLKKYEETLS-ISPKDSTALEG 197 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~p~~~~~~~~ 197 (398)
.++..|++++... |.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..
T Consensus 256 ~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 256 RVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 6778999999999 9999999999999886 68877 99999999997 79999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH-HHHcC
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDP-DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA-LLAAK 275 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~-~~~~~ 275 (398)
+|.++...|++++|...|+++++..|.++ .+|..++.++...|++++|+..|+++++..|. ....+...+.+ +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999986 69999999999999999999999999999887 77777766655 34699
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR 355 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 355 (398)
++++|..+|+++++..+. ...++..++.++...|++++|..+|++++...|.++.
T Consensus 406 ~~~~A~~~~e~al~~~p~-------------------------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGD-------------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred ChhHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 999999999999774332 2356667999999999999999999999998776654
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 356 ----GYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 356 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+|...+......|+.+.+..++.++++..|+++
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 888889999999999999999999999998533
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=1.6e-19 Score=165.54 Aligned_cols=233 Identities=11% Similarity=0.045 Sum_probs=192.4
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------CHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPK-------DST 193 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~ 193 (398)
.|.. .| ++.|+..|.+++.+....+ ..+..+.+++.+|.++...|+++.|+.+++++++..+. ...
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVS---DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 4544 67 9999999999997753222 22567789999999999999999999999999987543 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCCHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYELKDYEGSAAAYRVSTM-----VSKDINFE 262 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~ 262 (398)
++..+|.+|...|++++|+.++++++++.+. ...++.++|.+|...|++++|+.+|++++. .+|. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 7889999999999999999999999986431 245789999999999999999999999999 6787 688
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCC---hH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGR---VS 337 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~---~~ 337 (398)
++..+|.++...|++++|+.++++++...... .++. .....++.++...++ +.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR----------------------SHKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT----------------------CCSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999998865533 1222 223348889999999 88
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 338 DAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 338 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
+|+.++++. ...|.....+..+|.+|...|++++|..+|+++++..
T Consensus 321 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 321 DLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888888772 2234446688899999999999999999999998764
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=4e-20 Score=154.75 Aligned_cols=171 Identities=12% Similarity=0.126 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL----------------LGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.++.+...|..+...|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 334 (398)
++|+ ++.++..+|.++...|++++|+.+|+++++.. ++...++..+|.+|...|
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------------------------ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------------CCCHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999999997632 222456777999987765
Q ss_pred C--hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 015907 335 R--VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKV 388 (398)
Q Consensus 335 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 388 (398)
+ ...+...+.+++...| ...+++.+|.++...|++++|+.+|+++++++|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 4 4566777877764322 234788899999999999999999999999999853
No 81
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=7.2e-18 Score=159.91 Aligned_cols=273 Identities=14% Similarity=0.050 Sum_probs=189.3
Q ss_pred HHhHHHHHHhhcchhhcCCCchhhhhhhcchh--h-----c-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHH
Q 015907 97 EQKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--I-----G-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSE 168 (398)
Q Consensus 97 ~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~-----g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~ 168 (398)
.++..+|+..|+++... +++.+... +|.+ . + .+.|+.+|.++.. ..++.+++.+|.++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~-Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----------~~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYV-LGLRYMNGEGVPQDYAQAVIWYKKAAL-----------KGLPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHH-HHHHHHHTSSSCCCHHHHHHHHHHHHH-----------TTCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHH-HHHHHHcCCCCCCCHHHHHHHHHHHHH-----------CCCHHHHHHHHHHH
Confidence 45667788888877654 45555555 6655 2 3 7888888888764 34566778888888
Q ss_pred HH----hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 015907 169 EE----KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE-- 238 (398)
Q Consensus 169 ~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 238 (398)
.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCC
Confidence 77 77888888888888764 567888888888887 77888888888888775 467788888888887
Q ss_pred --ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCC---Cchhhh----ccc
Q 015907 239 --LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKS---DDLSVK----DGR 305 (398)
Q Consensus 239 --~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~----~~~ 305 (398)
.+++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++......... +.+... .++
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCC
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
Confidence 788888888888887653 57778888888876 77888888888776542110000 001110 111
Q ss_pred ccc--ccccccccCCCchHHHHHHHHHHhC-----CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHH
Q 015907 306 SGD--KKETEPQKVDPIQVELLLGKAYSDG-----GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG---KVGDAER 375 (398)
Q Consensus 306 ~~~--~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~ 375 (398)
... ..+.++......++...+|.+|... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.
T Consensus 275 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 275 PLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 111 2233334445556677788888777 7888888888888764 45678888888888766 7788888
Q ss_pred HHHHHHhhCCCChHHHHHh
Q 015907 376 MFIQARFFAPEKVKALVDQ 394 (398)
Q Consensus 376 ~~~~al~~~p~~~~~~~~l 394 (398)
+|+++++. +++.+++++
T Consensus 353 ~~~~a~~~--~~~~a~~~L 369 (490)
T 2xm6_A 353 WFRKAAAK--GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHH
Confidence 88888876 556666654
No 82
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=1.8e-17 Score=146.02 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV----------LQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.++|+..+..++.++ |.+..+|...+.+....+. +++++.+++.++..+|.+..+|...+.
T Consensus 46 s~eaL~~t~~~L~~n---------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 46 DESVLELTSQILGAN---------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp SHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567888999999999 9999999999999988776 789999999999999999999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc---
Q 015907 201 TLAELGD--YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD-YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--- 274 (398)
Q Consensus 201 ~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 274 (398)
++...++ +++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|. +..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 9999994 8999999999999999999999999999999998 69999999999999999 999999999999877
Q ss_pred -----------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC----------
Q 015907 275 -----------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG---------- 333 (398)
Q Consensus 275 -----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------- 333 (398)
+.++++++++.+++...| +...+|+++..++...
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P-------------------------~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDP-------------------------NDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHhccCccccchHH
Confidence 457899999988866322 2245666555555444
Q ss_pred -CChHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCChHHHHHhhh
Q 015907 334 -GRVSDAVAVYDRLISSYPNDFRGYLAKGIILK---ENGKVGDAERMFIQARFFAPEKVKALVDQYS 396 (398)
Q Consensus 334 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 396 (398)
+.+++++..++++++..|++...+..++.+.. ..|..++...++.+.+++||-...-|.++-+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 45899999999999999999655555544332 3578889999999999999998887776643
No 83
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.2e-19 Score=138.83 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
+|..+..+..+|..++..|++++|+.+|+++++.+|.++.+|..+|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.++..+|++++|+..|+++++++|+ +..++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPS-NEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHHhc
Confidence 9999999999999999999999999 999999998764
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.6e-19 Score=159.34 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=151.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHH
Q 015907 173 VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS------DPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 173 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 246 (398)
++++|+.+|+++ |.+|...|++++|+..|.+++++.+. ...++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 599999999987 66788999999999999999998532 2568999999999999999999
Q ss_pred HHHHHHHhhCCCC-C----HHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 247 AAYRVSTMVSKDI-N----FEVLRGLTNALLAA-KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 247 ~~~~~al~~~p~~-~----~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
.+|++++.+.|.. + ..++.++|.+|... |++++|+.+|++++.+.+.... .....
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-------------------~~~~~ 158 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-------------------VALSN 158 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-------------------hHHHH
Confidence 9999999987651 1 45889999999996 9999999999999886553210 00002
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-------GYLAKGIILKENGKVGDAERMFIQARFFAPEKVKA 390 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 390 (398)
.++..+|.++..+|++++|+.+|++++++.|++.. ++.++|.++..+|++++|+.+|++++.++|+....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 34566999999999999999999999999987643 67899999999999999999999999999987654
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=2.2e-18 Score=161.44 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 194 ALEGAAVTLAELG---DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL----KDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 194 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
+++.+|.+|...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |. ++.+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g-~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG-YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG-STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC-CHHHHHH
Confidence 4555555555556 666666666666666666666666666666543 46666666666665 55 5666666
Q ss_pred HHHH-H--HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC-----ChHH
Q 015907 267 LTNA-L--LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG-----RVSD 338 (398)
Q Consensus 267 la~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~ 338 (398)
+|.+ + ...+++++|+.+|+++.+ .....+.+++|.+|. .| ++++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~---------------------------~g~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRA---------------------------ADQPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHH---------------------------TTCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH---------------------------CCCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 6666 3 345666666666666543 223344555555555 23 5555
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 015907 339 AVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDAERMFIQARF 382 (398)
Q Consensus 339 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 382 (398)
|+.+|+++. ++++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 666655555 5555555555555544 2255555555555554
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=160.54 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=175.6
Q ss_pred cCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-
Q 015907 113 DAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI- 187 (398)
Q Consensus 113 ~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 187 (398)
..|.....+.. +|.+ .| ++.|+.+|.+++.+..... ....|....++..+|.++...|++++|+.+|++++..
T Consensus 22 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHN-LVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 44555555555 6655 67 8889998988887520000 0012677889999999999999999999999999987
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 188 -------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK--------PSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 188 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.|....++..+|.++...|++++|+.++++++++. |....++..+|.++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35557799999999999999999999999999874 455678999999999999999999999999
Q ss_pred Hhh--------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC------CC--------------Cchhhhcc
Q 015907 253 TMV--------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG------KS--------------DDLSVKDG 304 (398)
Q Consensus 253 l~~--------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~--------------~~~~~~~~ 304 (398)
+.. .|. ...++..+|.++...|++++|+.++++++...+.. +. .......+
T Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 180 LEIYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHTSCTTCHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHhCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 998 555 67789999999999999999999999998764321 00 00000001
Q ss_pred cccc--ccccccccCCCch--HHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 305 RSGD--KKETEPQKVDPIQ--VELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 305 ~~~~--~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
.+.. ..+.......|.. ++..+|.+|...|++++|+.+|++++++.|.
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1111 1122233344443 4455999999999999999999999998775
No 87
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1e-19 Score=155.90 Aligned_cols=206 Identities=13% Similarity=0.020 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGA-------AVTLAELGDYTRAVSLLQDLAKEKPSD------- 225 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~------- 225 (398)
.++..|..+ ..+++..|...|.+++..+|+..++|.++ +.++...++..+++..+++.+.+.|..
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 445555555 58999999999999999999999999999 899999999999999999999977653
Q ss_pred --------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 226 --------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 226 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+++..++.++...|++++|.+.|..++...|. +. +++.+|.++...++|++|+.+|+.+..
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-- 163 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGK-- 163 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--
Confidence 245566889999999999999999999999998 77 999999999999999999999965421
Q ss_pred cCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHH
Q 015907 292 STGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSY--PN-DFRGYLAKGIILK 365 (398)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~ 365 (398)
..+| ..+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++.
T Consensus 164 ------------------------~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 164 ------------------------WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR 219 (282)
T ss_dssp ------------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred ------------------------cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 1122 3578889999999999999999999998643 55 5679999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 366 ENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 366 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
.+|+.++|...|++++..+|+ +.++..+.
T Consensus 220 ~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999 88776653
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=3.3e-19 Score=144.95 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=119.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.....++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334456778888888888888888888888888888888888888888888888888888888888888 7766655554
Q ss_pred HHH-HccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccc
Q 015907 235 VKY-ELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETE 313 (398)
Q Consensus 235 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
+.. ..++..+|+..+++++..+|+ ++.+++.+|.++...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------- 137 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKV----------------------- 137 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----------------------
Confidence 432 223344578888888888888 7888888888888888888777777766441
Q ss_pred cccCCC--chHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 314 PQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 314 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.+.+ ..++..+|.++...|+.++|+..|++++.
T Consensus 138 --~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 --NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp --CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 1111 12455566666666666666666666653
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=2.5e-17 Score=150.39 Aligned_cols=266 Identities=12% Similarity=0.006 Sum_probs=200.7
Q ss_pred HHHHhHHHHHHhhcchhhcCCCchh-----hhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 95 ALEQKKAEEIKEFGPIDYDAPIETE-----KKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 95 ~~~~~~~eA~~~~~~~~~~~p~~~~-----~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
...++.++|+..+++++...|.... .+.. +|.+ .| ++.|...+.+++.+..... .......++..+|
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSV-LGEVLHCKGELTRSLALMQQTEQMARQHD---VWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 3567889999999998887765432 1222 4544 77 9999999999998761110 0011234578899
Q ss_pred HHHHHhccHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSIS--------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-----PDVFRLL 232 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l 232 (398)
.++...|++++|+..|++++... |....++..+|.++...|++++|..++++++...+.. ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 99999999999999999999864 3345678889999999999999999999999987652 4578899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-C-HHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-N-FEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
|.++...|++++|..++++++.+.+.. . .... ..++.++...|++++|..++.++....+..
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 248 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN------------ 248 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc------------
Confidence 999999999999999999998874321 2 2221 134556889999999999997763211000
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
.......+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...++++
T Consensus 249 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 249 ---------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp ---------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 0000123456999999999999999999999876443 1357889999999999999999999999
Q ss_pred HhhCC
Q 015907 381 RFFAP 385 (398)
Q Consensus 381 l~~~p 385 (398)
+.+.+
T Consensus 320 l~~~~ 324 (373)
T 1hz4_A 320 LKLAN 324 (373)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88754
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.80 E-value=5.2e-18 Score=149.18 Aligned_cols=169 Identities=16% Similarity=0.111 Sum_probs=153.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|.+...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+ ....+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999997 77777778
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
+..+...++.++|+..|++++.. .++..++++.+|.++...|++++|+..|++++
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~-------------------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE-------------------------NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc-------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888999999999999988662 22224567779999999999999999999999
Q ss_pred HhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 348 SSYPND--FRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 348 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999998 88999999999999999999999999885
No 91
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=6.4e-17 Score=142.58 Aligned_cols=226 Identities=8% Similarity=-0.061 Sum_probs=194.3
Q ss_pred HHHHHhhcchhhcCCCchhhhhhhcchh---hc-----------HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHH
Q 015907 101 AEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-----------VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKEL 166 (398)
Q Consensus 101 ~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-----------~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~ 166 (398)
++|+..+..++..+|.+..+|+. .+.+ .| +..++.++..++..+ |.+..+|...+.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~-Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~---------PKny~aW~hR~w 116 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNC-RREVLQHLETEKSPEESAALVKAELGFLESCLRVN---------PKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHH-HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHH-HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Confidence 57899999999999999999987 6666 22 367899999999999 999999999999
Q ss_pred HHHHhcc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 015907 167 SEEEKNV--LQTRLKKYEETLSISPKDSTALEGAAVTLAELGD-YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYEL---- 239 (398)
Q Consensus 167 ~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 239 (398)
++...+. +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999984 9999999999999999999999999999999999 69999999999999999999999999999887
Q ss_pred ----------cCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHhcCCCCCc
Q 015907 240 ----------KDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA-----------KKPDEAVQFLLASRERLSTGKSDD 298 (398)
Q Consensus 240 ----------g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~ 298 (398)
+.++++++++.+++..+|+ +..+|+.+..++... +.++++++.+.++++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--------- 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--------- 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---------
Confidence 5689999999999999999 999998776666554 346788888887754
Q ss_pred hhhhccccccccccccccCCCchHHHHHHHHH-----HhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 299 LSVKDGRSGDKKETEPQKVDPIQVELLLGKAY-----SDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
..|+..|..++.+. ...|..++...++.++++++|-...-|..++.-+
T Consensus 267 ------------------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 267 ------------------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ------------------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 55666666644433 2467889999999999999998877777666544
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.79 E-value=1.6e-17 Score=139.32 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK----DYEGSAAAYR 250 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 250 (398)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578889998875 78999999999999999999999999999875 578999999999998 7 9999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC----chH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP----IQV 322 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 322 (398)
++.+ +. ++.+++.+|.+|.. .+++++|+.+|+++ ....+ ..+
T Consensus 78 ~A~~--~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A---------------------------~~~~~~~~~~~a 127 (212)
T 3rjv_A 78 KAVE--AG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDA---------------------------ARDSESDAAVDA 127 (212)
T ss_dssp HHHH--TT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH---------------------------TSSTTSHHHHHH
T ss_pred HHHH--CC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH---------------------------HHcCCCcchHHH
Confidence 9966 45 89999999999987 89999999999988 44556 577
Q ss_pred HHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCChHHHH
Q 015907 323 ELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-G-----KVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 323 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
+..+|.+|.. .+++++|+.+|+++++. |.++.+++++|.+|... | ++++|+.+|+++.+........++
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8889999999 88999999999999997 77888999999999875 3 899999999999998765555554
Q ss_pred Hhh
Q 015907 393 DQY 395 (398)
Q Consensus 393 ~l~ 395 (398)
...
T Consensus 207 ~~l 209 (212)
T 3rjv_A 207 DRI 209 (212)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 93
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=4.5e-18 Score=164.36 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=133.2
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYR 250 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 250 (398)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHH
Q 015907 251 VSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAY 330 (398)
Q Consensus 251 ~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 330 (398)
++++.+|+ +..++..+|.++...|++++|+..|+++++.. .+...++..+|.++
T Consensus 82 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 82 QASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------------------------PEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHH
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999986632 22235666799999
Q ss_pred HhC---CChHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 331 SDG---GRVSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 331 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
... |++++|+..|+++++.+|.+...+..++
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 999 9999999999999999999988888777
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.79 E-value=5.1e-18 Score=149.24 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=155.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999977777777778
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
.+...++.++|+..|++++..+|+ ++.+++.+|.++...|++++|+..|.++++..+..
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~-------------------- 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA-------------------- 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG--------------------
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc--------------------
Confidence 888999999999999999999999 99999999999999999999999999997632211
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
....++..++.++...|+.++|...|++++.
T Consensus 253 ---~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 253 ---ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 1134677799999999999999999999875
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=1.8e-18 Score=140.65 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=142.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
+|...+.+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...| ++..+..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHH
Confidence 3455567889999999999999999999999999999999999999999999999999999999999998 46666555
Q ss_pred HHHHH-HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 268 TNALL-AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 268 a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+.+.. ..+...+|+..+++++... ++...+++.+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~-------------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAAN-------------------------PDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 54432 3345556899998886632 222456777999999999999999999999
Q ss_pred HHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 347 ISSYPND--FRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 347 l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
++.+|+. ..++..+|.++..+|+.++|+..|++++.
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999976 56999999999999999999999999875
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=5.2e-18 Score=163.90 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLL 285 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~ 285 (398)
|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|+ +..++..+|.++...|++++|+.+|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555556666665555555555555666665566666666666666665555 55555566666666666666666655
Q ss_pred HHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 015907 286 ASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILK 365 (398)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 365 (398)
++++.. .+...++..+|.+|...|++++|+.+|+++++.+|++..++..+|.++.
T Consensus 82 ~al~~~-------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 82 QASDAA-------------------------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHC-------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 554421 1112344445555666666666666666666555555555556666665
Q ss_pred Hc---CCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 366 EN---GKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 366 ~~---g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
.+ |++++|+..|+++++.+|++...+.
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHTCCCSCHHH
T ss_pred HhhccccHHHHHHHHHHHHhcCCcccChHH
Confidence 55 5556666666666655555544443
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=7.8e-19 Score=138.18 Aligned_cols=108 Identities=10% Similarity=0.017 Sum_probs=60.1
Q ss_pred CCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 151 GSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 151 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
....|.++.+++.+|.++...|++++|+.+|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+|+
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 33445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+|.+|..+|++++|+.+|++++++.|+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555554
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=2.8e-18 Score=135.04 Aligned_cols=126 Identities=12% Similarity=0.043 Sum_probs=117.1
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAA 247 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 247 (398)
+...+++-.+-..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|.++.+|..+|.++..+|++++|+.
T Consensus 12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 34445555566788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
+|++++.++|+ ++.+|+++|.+|..+|++++|+..|+++++..+..
T Consensus 92 ~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 92 LYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999 99999999999999999999999999999876643
No 99
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.77 E-value=1.2e-17 Score=153.00 Aligned_cols=272 Identities=8% Similarity=0.021 Sum_probs=197.0
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCC---chhhhhhhcchh-------hc-HHHHH---------HHHHH
Q 015907 81 DINFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPI---ETEKKTIGLGTK-------IG-VGVAV---------VIFGL 140 (398)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~---~~~~~~~~lg~~-------~g-~~~A~---------~~~~~ 140 (398)
.......|.........++..+|..+++++....+. +...... .++. .+ ...+. ..+..
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y-y~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIY-YSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHH-HHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 345667777778888889999999988876443221 2222211 1111 11 11111 33333
Q ss_pred HHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 015907 141 VFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP------KDSTALEGAAVTLAELGDYTRAVSL 214 (398)
Q Consensus 141 a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~ 214 (398)
+-.... ..........++.+|..+...|++++|+.+|++++...+ ..+.++..+|.+|...|++++|+.+
T Consensus 88 i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~ 163 (378)
T 3q15_A 88 IETPQK----KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163 (378)
T ss_dssp HHGGGH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccCC----CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 321110 000001123567789999999999999999999998742 2356899999999999999999999
Q ss_pred HHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHH
Q 015907 215 LQDLAKEKPS-------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQ 282 (398)
Q Consensus 215 ~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~ 282 (398)
+++++++.+. ...++..+|.++...|++++|+.+|++++.+.+. ....++.++|.++...|++++|+.
T Consensus 164 ~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999987543 2457889999999999999999999999987432 124578999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhccccccccccccccCCC--chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-----ChH
Q 015907 283 FLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP--IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN-----DFR 355 (398)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~ 355 (398)
++++++...... .+| ..++..+|.++...|++++|+.++++++++.+. ...
T Consensus 244 ~~~~al~~~~~~----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 244 HFQKAAKVSREK----------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHH----------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHhh----------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998754321 222 345566999999999999999999999998543 345
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHH
Q 015907 356 GYLAKGIILKENGK---VGDAERMFIQ 379 (398)
Q Consensus 356 ~~~~la~~~~~~g~---~~~A~~~~~~ 379 (398)
.+..++.++...|+ +.+|+.++++
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 66788888888888 8888888776
No 100
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=1e-16 Score=150.15 Aligned_cols=200 Identities=15% Similarity=0.088 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL----GDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
++.+++.+|.++...| ++++|+.+|+++.+..|.....++.+|.+|... +++++|+.+|+++. |.++.++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 3448999999999999 999999999999999999999999999999766 79999999999998 8899999
Q ss_pred HHHHHH-H--HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 230 RLLGEV-K--YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-----KPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 230 ~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
+.+|.+ + ...+++++|+.+|+++.+.+ ++.+++.+|.+|. .| ++++|+.+|+++
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-------------- 313 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-------------- 313 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT--------------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH--------------
Confidence 999998 4 46899999999999998754 7999999999998 55 999999999887
Q ss_pred hccccccccccccccCCCchHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHH
Q 015907 302 KDGRSGDKKETEPQKVDPIQVELLLGKAYSD----GGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE----NGKVGDA 373 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 373 (398)
. .....+.+++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++.+|
T Consensus 314 -------------a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 314 -------------V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp -------------T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred -------------h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 3 2334677779999987 4599999999999986 5678899999999985 4689999
Q ss_pred HHHHHHHHhhCCCChHHHHH
Q 015907 374 ERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 374 ~~~~~~al~~~p~~~~~~~~ 393 (398)
..+|+++.+..+......+.
T Consensus 378 ~~~~~~A~~~g~~~a~~~l~ 397 (452)
T 3e4b_A 378 YVFSQLAKAQDTPEANDLAT 397 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999877655444443
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=7.1e-18 Score=128.82 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=44.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRG 266 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 266 (398)
++|+.++++..+|..|+..|+|++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+ ++.+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444444444 4444444
Q ss_pred HHHHHHHcCCchHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~ 284 (398)
+|.++..+|++++|+..|
T Consensus 87 lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAY 104 (126)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 444443333333333333
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=1.5e-17 Score=147.80 Aligned_cols=202 Identities=12% Similarity=0.055 Sum_probs=156.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHH
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--D----PDVFRL 231 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~ 231 (398)
.|.++...|++++|+.+|.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+. + ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3667888999999999999999886533 458899999999999999999999999998532 2 467889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
+|.+|.. |++++|+.+|++++.+.|.. ...++.++|.++..+|++++|+.+|++++...+....
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 190 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------- 190 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------
Confidence 9999998 99999999999999987651 1568899999999999999999999999886543310
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCCHHHHHHH--HHH
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFR-----GYLAKGIILKENGKVGDAERM--FIQ 379 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~--~~~ 379 (398)
.......+..+|.++...|++++|+.+|++++ ++|.... .+..++..+ ..|+.+.+... +..
T Consensus 191 ---------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~~~~~ 259 (307)
T 2ifu_A 191 ---------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRSPL 259 (307)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHTTSHH
T ss_pred ---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHHhCch
Confidence 00011245558999999999999999999999 9997643 344555555 56776555442 233
Q ss_pred HHhhCCCC
Q 015907 380 ARFFAPEK 387 (398)
Q Consensus 380 al~~~p~~ 387 (398)
+..++|..
T Consensus 260 ~~~ld~~~ 267 (307)
T 2ifu_A 260 VTYMDNDY 267 (307)
T ss_dssp HHTSCHHH
T ss_pred hhhhhHHH
Confidence 44444433
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=1.2e-17 Score=145.63 Aligned_cols=226 Identities=13% Similarity=0.105 Sum_probs=168.7
Q ss_pred HHHHHHhhcchhhcC-CCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 100 KAEEIKEFGPIDYDA-PIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 100 ~~eA~~~~~~~~~~~-p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
+.+|++.+.++...+ |.....+.. +|.+ .| ++.|+..|.+++.+..... ....|....++..+|.++...|++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 101 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNI-LALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLNNLAVLYGKRGKY 101 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhccH
Confidence 345666666666544 555566655 7777 77 9999999999997631110 012267788999999999999999
Q ss_pred HHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Q 015907 175 QTRLKKYEETLSI--------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE--------KPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 175 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 238 (398)
++|+.+|++++.. +|....++..+|.++...|++++|+.+++++++. .|....++..+|.++..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988 4666789999999999999999999999999998 66667899999999999
Q ss_pred ccCHHHHHHHHHHHHhh---------CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccc
Q 015907 239 LKDYEGSAAAYRVSTMV---------SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDK 309 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~---------~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
.|++++|+.+|++++.+ .+. ....+..++..+...+....+..+ ..+.......
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------- 244 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGD-NKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKAC--------------- 244 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSS-CCCHHHHHHHHHHTTCCCCC-------------CC---------------
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchh-HHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhc---------------
Confidence 99999999999999987 333 455777777777766665544443 2222211111
Q ss_pred cccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 310 KETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 310 ~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
....|. .++..+|.+|...|++++|+.+|+++++.
T Consensus 245 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 -----KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122233 34555999999999999999999999875
No 104
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.76 E-value=2.6e-18 Score=150.58 Aligned_cols=198 Identities=9% Similarity=0.048 Sum_probs=155.4
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..++.+|..+...|++++|+..|++++..+|+++.++..+|.+|..+|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
++..+|++++|+..|++++.++|+ +...+......... ..++..+......
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------------- 131 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNSIEER------------------------- 131 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHHHHHT-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHHHHHH-------------------------
Confidence 999999999999999999999886 43221111111111 1112222211111
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN-GKVGDAERMFIQARFF 383 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 383 (398)
.......+...++..+ .|++++|+..++++++.+|++......++.++... +.+++|...|.++.+.
T Consensus 132 ~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1111223444466554 68999999999999999999988888888888776 7789999999988764
No 105
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.76 E-value=2.5e-16 Score=143.84 Aligned_cols=231 Identities=14% Similarity=0.004 Sum_probs=184.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~ 201 (398)
.| ++.|...+.+++... +.. .......++..+|.++...|++++|+..+++++...|... .++..+|.+
T Consensus 27 ~g~~~~A~~~~~~al~~~---~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEEL---PPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp TTCHHHHHHHHHHHHHTC---CTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCC-chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 67 999999999998765 100 0001224678899999999999999999999998765432 347889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----CHHHHHHHHH
Q 015907 202 LAELGDYTRAVSLLQDLAKEK--------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI----NFEVLRGLTN 269 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~la~ 269 (398)
+...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...+.. ...++..+|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 999999999999999999864 2335677889999999999999999999999987652 2457889999
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH----HHHHHHHhCCChHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL----LLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~ 345 (398)
++...|++++|..+++++....... ..+..... .++.++...|++++|..++++
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNG----------------------KYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTS----------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcc----------------------CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999999999998754321 11111111 245568899999999999999
Q ss_pred HHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 346 LISSYPND----FRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 346 al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
++...|.. ...+..++.++...|++++|...+++++...+
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 98876653 23578899999999999999999999987754
No 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=2.5e-16 Score=139.41 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-C
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN-VLQTRLKKYEETLSISPKDSTALEGAAVTLAEL-G-D 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-~ 207 (398)
.++|+.++.+++.++ |.+..+|..++.++...| .+++++.++++++..+|++..+|...+.++... + +
T Consensus 70 se~AL~lt~~~L~~n---------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 70 SERALELTEIIVRMN---------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp SHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHHhC---------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC
Confidence 356777888899888 999999999999999999 599999999999999999999999999999998 8 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC---
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYE--------GSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK--- 276 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~--- 276 (398)
+++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|. +..+|...+.++...+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999988887 999999999999999 99999999999999887
Q ss_pred ----chHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCCh----------------
Q 015907 277 ----PDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRV---------------- 336 (398)
Q Consensus 277 ----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------- 336 (398)
++++++++.+++... .....+|.++..++...|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~~-------------------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-------------------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred chHHHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 689999998886632 22245676677777776654
Q ss_pred ----HHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChHHHHHh
Q 015907 337 ----SDAVAVYDRLISSY------PNDFRGYLAKGIILKENGKVGDAERMFIQAR-FFAPEKVKALVDQ 394 (398)
Q Consensus 337 ----~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l 394 (398)
.+-.......+... +..+.++..++.+|...|+.++|.++|+... +.||-...-|.-+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 22222222222222 4567889999999999999999999999987 6788777666544
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=9.4e-18 Score=149.11 Aligned_cols=199 Identities=9% Similarity=0.068 Sum_probs=158.8
Q ss_pred HhccHHHHHHHHHHHHhcCC--------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSISP--------KD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLL 232 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l 232 (398)
..|++++|..+++++.+..+ +. ...+...|.+|...|++++|+..|.+++++.+.. ..++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677778777777765432 11 1255666889999999999999999999986532 4588999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
|.+|..+|++++|+.+|++++.+.+.. ...++.++|.+|.. |++++|+.+|++++.+.+....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~----------- 150 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER----------- 150 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC-----------
Confidence 999999999999999999999885421 24578999999998 9999999999999886553210
Q ss_pred cccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015907 308 DKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPND------FRGYLAKGIILKENGKVGDAERMFIQAR 381 (398)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 381 (398)
......++..+|.+|..+|++++|+.+|++++.+.|.+ ..++..+|.++..+|++++|+.+|++++
T Consensus 151 --------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 151 --------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred --------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 00012456669999999999999999999999986654 3478899999999999999999999999
Q ss_pred hhCCCChH
Q 015907 382 FFAPEKVK 389 (398)
Q Consensus 382 ~~~p~~~~ 389 (398)
++|+...
T Consensus 223 -~~p~~~~ 229 (307)
T 2ifu_A 223 -SIPGFSG 229 (307)
T ss_dssp -TSTTSTT
T ss_pred -CCCCCCC
Confidence 9997653
No 108
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=6.9e-18 Score=151.76 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=155.3
Q ss_pred hHHHHHHhhcc----hhhcCCCchhhhhhhcch---------------hhc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 99 KKAEEIKEFGP----IDYDAPIETEKKTIGLGT---------------KIG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 99 ~~~eA~~~~~~----~~~~~p~~~~~~~~~lg~---------------~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
.+++|+..+.. .+...|.. ++.. .|. .++ ++.|+..|..++... |..+
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~-~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~---------p~~a 147 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGS-VGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEK---------LEQS 147 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTT-TCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHH---------HHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCc-CCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHH---------HHHH
Confidence 45668888888 77777765 2222 221 123 556666666666666 8889
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
.++..+|.+++..|++++|+.+|++++.+.|.+ ..++.++|.+|..+|++++|+.+|+++++++|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHh
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEA-VQFLLASRERL 291 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~ 291 (398)
+++.+++.+|.++..+|++++|+..|+++++++|+ +..++..++.++...|++++| ...|.++...+
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 999999999999999999999 45676665543
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.74 E-value=9.9e-18 Score=131.94 Aligned_cols=118 Identities=8% Similarity=0.071 Sum_probs=108.8
Q ss_pred HHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 015907 136 VIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLL 215 (398)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 215 (398)
..|.+++.+. |.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|
T Consensus 8 ~~~~~al~~~---------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 78 (148)
T 2vgx_A 8 GTIAMLNEIS---------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78 (148)
T ss_dssp CSHHHHTTCC---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCC---------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3466777777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHH
Q 015907 216 QDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 216 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
++++.++|+++.+++.+|.++...|++++|+..|+++++++|+ ++..
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~ 125 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN-XPEF 125 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CGGG
T ss_pred HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CCcc
Confidence 9999999999999999999999999999999999999999887 6654
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.74 E-value=1.3e-16 Score=135.08 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=135.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCCh---HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTE---EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST---ALEGAAVT 201 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~ 201 (398)
.| ++.|+..|++++... |.. ..+++.+|.++...|++++|+..|+++++.+|+++. +++.+|.+
T Consensus 17 ~g~~~~A~~~~~~~~~~~---------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRY---------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HTCHHHHHHHHHHHHHHC---------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 66 888888888888766 543 578999999999999999999999999999999864 78999998
Q ss_pred HHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHccCHHHHH
Q 015907 202 LAE------------------LGDYTRAVSLLQDLAKEKPSDPDVF-----------------RLLGEVKYELKDYEGSA 246 (398)
Q Consensus 202 ~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~ 246 (398)
+.. .|++++|+..|+++++..|+++.++ ..+|.+|...|++++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 876 5789999999999999999886544 57889999999999999
Q ss_pred HHHHHHHhhCCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 247 AAYRVSTMVSKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 247 ~~~~~al~~~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
..|+++++..|+ ++ .++..+|.++..+|++++|+..++.+....+
T Consensus 168 ~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 168 NRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 999999999998 65 6899999999999999999999988765433
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=9.4e-16 Score=135.68 Aligned_cols=257 Identities=9% Similarity=-0.019 Sum_probs=203.3
Q ss_pred CchhHHHHHHHHHHHHHHH-hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc--HHHHHHHHHHHHhccCCCCCCCC
Q 015907 80 SDINFEERLAAVRRSALEQ-KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG--VGVAVVIFGLVFALGDFLPSGSV 153 (398)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~-~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g--~~~A~~~~~~a~~~~~~~~~~~~ 153 (398)
...+|.+...-.+.....+ ..++|+..+..++..+|.+..+|.. .+.+ .| ++.++.++..++..+
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~-R~~iL~~l~~~l~eEL~~~~~~L~~n-------- 119 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQY-RFSLLTSLNKSLEDELRLMNEFAVQN-------- 119 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHTT--------
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHhC--------
Confidence 4556655555544444333 3468999999999999999999988 7766 45 899999999999999
Q ss_pred CCChHHHHHHHHHHHHHh-c-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCC
Q 015907 154 SPTEEAGVVNKELSEEEK-N-VLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYT--------RAVSLLQDLAKEKP 223 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p 223 (398)
|.+..+|..++.++... + ++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|
T Consensus 120 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 120 -LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred -CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 99999999999999998 8 8999999999999999999999999999999999888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH----------------H
Q 015907 224 SDPDVFRLLGEVKYELKD-------YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE----------------A 280 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~----------------A 280 (398)
.+..+|...+.++...+. ++++++++.+++..+|. +..+|..+..++...|+... .
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 999999999999999887 79999999999999999 99999999999988877511 0
Q ss_pred H-HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH-HhCCCChHHHH
Q 015907 281 V-QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI-SSYPNDFRGYL 358 (398)
Q Consensus 281 ~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 358 (398)
. ....-+....... -..........+...++.+|...|+.++|+.+|+.+. +.+|-....|.
T Consensus 278 ~~~~~~~~~~~~~~~----------------~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 278 IETVEAFGFPMPSDP----------------LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp --------CCCCC-C----------------CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred chhHHHHHHHHHhcc----------------cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 0 0000011100000 0000112222455559999999999999999999987 56787777777
Q ss_pred HHHHH
Q 015907 359 AKGII 363 (398)
Q Consensus 359 ~la~~ 363 (398)
..+..
T Consensus 342 ~~~~~ 346 (349)
T 3q7a_A 342 FRRRE 346 (349)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=3.2e-19 Score=160.51 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=150.2
Q ss_pred hccHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 171 KNVLQTRLKKYEE----TLSISPKDSTALEGAAVTLA------------ELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 171 ~g~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
.+.+++|+..+.. ++.+.|.. ++..+|.... .++++++|+..+++++...|....++..+|.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 4466777777776 66666665 3434443322 4567777888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCC---------------HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCch
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDIN---------------FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDL 299 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 299 (398)
++...|++++|+..|++++.+.|. + ..++.++|.++...|++++|+.+|++++...+
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------- 227 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEY-ESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS------- 227 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTT-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc-cccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------
Confidence 888888888888888888888888 6 68999999999999999999999999977322
Q ss_pred hhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH-HHHHH
Q 015907 300 SVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDA-ERMFI 378 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 378 (398)
+...+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|+
T Consensus 228 ------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 228 ------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp ------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456777999999999999999999999999999999999999999999999999 55677
Q ss_pred HHHhh
Q 015907 379 QARFF 383 (398)
Q Consensus 379 ~al~~ 383 (398)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=6.6e-16 Score=118.63 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.|++++|+..+++++...|. +..++..+|.++...|++++|+.++.+++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999 89999999999999999999999999987643
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=3.4e-17 Score=128.88 Aligned_cols=117 Identities=18% Similarity=0.154 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
|+ ++.+++.+|.++...|++++|+.+|+++++..+..
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99 99999999999999999999999999998865543
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-16 Score=120.59 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..|..+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVS------KDINFEVLRGLTNALLA 273 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~la~~~~~ 273 (398)
++...|++++|+..|++++.++ |. +..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~-~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSS-AREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchh-HHHHHHHHHHHHHh
Confidence 9999999999999999999999 88 88888888877654
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=3.1e-17 Score=128.25 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|.+...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++...|++++|+.+|++++.++|+ ++.......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~ 127 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA-QPAHEALAA 127 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT-CGGGHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence 999999999999999999999987 665544433
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=5.4e-16 Score=129.89 Aligned_cols=186 Identities=11% Similarity=-0.028 Sum_probs=157.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG----DY 208 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~ 208 (398)
+|..+|.++.. ..++.+++.+|.++...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++
T Consensus 4 eA~~~~~~aa~-----------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~ 69 (212)
T 3rjv_A 4 EPGSQYQQQAE-----------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADY 69 (212)
T ss_dssp CTTHHHHHHHH-----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCH
T ss_pred hHHHHHHHHHH-----------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCH
Confidence 46667777764 457889999999999999999999999999875 689999999999998 7 99
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHH----cCCchH
Q 015907 209 TRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSKD-INFEVLRGLTNALLA----AKKPDE 279 (398)
Q Consensus 209 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~-~~~~~~~~la~~~~~----~~~~~~ 279 (398)
++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..|. .++.+++.||.+|.. .+++++
T Consensus 70 ~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 70 PQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999965 5689999999999998 88999999999999998872 048999999999999 899999
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC-C-----ChHHHHHHHHHHHHhCCCC
Q 015907 280 AVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG-G-----RVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 280 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~ 353 (398)
|+.+|+++... .....+.+++|.+|... | ++++|+.+|+++.+.. +
T Consensus 148 A~~~~~~A~~~--------------------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL--------------------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--F 199 (212)
T ss_dssp HHHHHHHHHHT--------------------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHc--------------------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--C
Confidence 99999998652 12345778899999764 3 8999999999999864 4
Q ss_pred hHHHHHHHH
Q 015907 354 FRGYLAKGI 362 (398)
Q Consensus 354 ~~~~~~la~ 362 (398)
..+...++.
T Consensus 200 ~~A~~~l~~ 208 (212)
T 3rjv_A 200 DTGCEEFDR 208 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=1.9e-17 Score=141.95 Aligned_cols=197 Identities=13% Similarity=0.040 Sum_probs=169.7
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHH-------HHHHHHhccHHHHHHHHHHHHhcCCCCH--------
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNK-------ELSEEEKNVLQTRLKKYEETLSISPKDS-------- 192 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------- 192 (398)
.+ ...|...|.+++.++ |..+.+|..+ +.++...+++.+++..+++.+.+.|...
T Consensus 19 ~~d~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred CCCHHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 45 788999999999999 9999999999 8999999999999999999999877653
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 015907 193 -------------TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI 259 (398)
Q Consensus 193 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 259 (398)
+++..++.++...|+|++|.+.|..++...|++. +++.+|.++...+++++|+.+|+.+....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 3455588999999999999999999999999888 99999999999999999999999887653220
Q ss_pred C-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc---hHHHHHHHHHHhCCC
Q 015907 260 N-FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI---QVELLLGKAYSDGGR 335 (398)
Q Consensus 260 ~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 335 (398)
. ..+++.+|.++..+|++++|+.+|+++.. ...+|. ++.+++|.++..+|+
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-------------------------g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEAND-------------------------SPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------------------------STTTTTTHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-------------------------CCCCccccHHHHHHHHHHHHHcCC
Confidence 1 35899999999999999999999998853 111133 577889999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKG 361 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la 361 (398)
.++|...|++++..+|+ ..++..|.
T Consensus 224 ~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 224 ESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999999 77766654
No 119
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=1.8e-15 Score=152.18 Aligned_cols=233 Identities=14% Similarity=0.044 Sum_probs=168.6
Q ss_pred HHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 96 LEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 96 ~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
..+.++||..+|++.. .+..+... +-...| ++.|..++.+ ...+.+|+.+|.++...|++
T Consensus 1061 ~lglyEEAf~IYkKa~----~~~~A~~V-Lie~i~nldrAiE~Aer--------------vn~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD----VNTSAVQV-LIEHIGNLDRAYEFAER--------------CNEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred hCCCHHHHHHHHHHcC----CHHHHHHH-HHHHHhhHHHHHHHHHh--------------cCCHHHHHHHHHHHHhCCCH
Confidence 3456677777777652 12222111 111145 6666666664 35577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+..|.++ +++..|..+|.++.+.|+|++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|.
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI---- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI---- 1190 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----
Confidence 9999999875 78889999999999999999999999998887744 2333458888888888774 33332
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGG 334 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 334 (398)
..+ +...+..+|..+...|+|++|..+|.++ ..|..+|.+|..+|
T Consensus 1191 ~~~--n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------------------------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1191 NGP--NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------------SNFGRLASTLVHLG 1235 (1630)
T ss_pred hCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------------------------hHHHHHHHHHHHhC
Confidence 133 4566677888888888888888888665 24555777777777
Q ss_pred ChHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 335 RVSDAVAVYDRLISSYP-------------------------NDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 335 ~~~~A~~~~~~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++++|++.++++....+ .+++.+..++..|...|.+++|+.++++++.++|.+..
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 77777777777643221 13445567888899999999999999999999998877
Q ss_pred HHHH
Q 015907 390 ALVD 393 (398)
Q Consensus 390 ~~~~ 393 (398)
.+..
T Consensus 1316 mftE 1319 (1630)
T 1xi4_A 1316 MFTE 1319 (1630)
T ss_pred HHHH
Confidence 7743
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.70 E-value=8.9e-16 Score=122.81 Aligned_cols=135 Identities=9% Similarity=0.068 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHH--HHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRG--LTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
...|++++|+.+|++++..+|. +..++.. ++..+...|++++|+..+.+......
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999999999999 8888854 44558889999999999998876554
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=4.8e-16 Score=124.56 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=111.2
Q ss_pred CCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 152 SVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 152 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
...+..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+..|+++++++|++..+|+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
+|.++..+|++++|+.+|++++.++|+ +..++...+...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~ 123 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGN-GGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 999999999999999999999999999 777766666443
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.70 E-value=2.2e-15 Score=115.66 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
++.+|.++...|++++|+..+++++...|. +..++..+|.++...|++++|+.+++++....
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 444444444444455555555444444444 44444444555444455555555544443311
Q ss_pred ccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 309 KKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
......+..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.++++++..+|+
T Consensus 66 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp --------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred --------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 1111233335555555666666666666666666666666666777777777777777777777666664
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=6.8e-16 Score=118.55 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=118.4
Q ss_pred CCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 015907 152 SVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRL 231 (398)
Q Consensus 152 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 231 (398)
...|....+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+++++++..|.+..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34478889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKK 276 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~ 276 (398)
+|.++...|++++|+.+|++++..+|. +..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 89999999999987764
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.69 E-value=9.8e-16 Score=117.07 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=118.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCch
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPD 278 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~ 278 (398)
++...|++++|+.+|++++..+|+ +..++..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 9999999999999988763
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=7.5e-17 Score=154.34 Aligned_cols=185 Identities=11% Similarity=0.038 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--C
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGD----------YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK--D 241 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~ 241 (398)
.++|+..+.+++..+|++..+|+..+.++...|+ +++++..++++++.+|++..+|...+.++...+ +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3678999999999999999999999999999998 999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc
Q 015907 242 YEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI 320 (398)
Q Consensus 242 ~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (398)
++++++++.++++.+|. +..+|...+.++...| .++++++++.++ +..+|.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~---------------------------I~~~p~ 176 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSL---------------------------ITRNFS 176 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTT---------------------------TTTTCC
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHH---------------------------HHHCCC
Confidence 79999999999999999 9999999999999999 899999999777 445555
Q ss_pred --hHHHHHHHHHHhC--------------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH------------
Q 015907 321 --QVELLLGKAYSDG--------------GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGD------------ 372 (398)
Q Consensus 321 --~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------ 372 (398)
.+|.+++.++... +.++++++++.+++..+|++..+|+.++.++...+++++
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 4666688887664 568999999999999999999999999999999988766
Q ss_pred HHHHHHHHHhhCCC
Q 015907 373 AERMFIQARFFAPE 386 (398)
Q Consensus 373 A~~~~~~al~~~p~ 386 (398)
|+..|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 55556666666665
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=3e-16 Score=122.56 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 179 KKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 179 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
++.+++.+|.++...|++++|+.+|++++...+..
T Consensus 85 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 -EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999998865533
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=1.5e-15 Score=133.99 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---C-
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI---N- 260 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~- 260 (398)
....+...+..+...|++++|+..+.++++..+... ..++.+|.++...|++++|+.+|++++...+.. .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344566778889999999999999999999887654 345678888999999999999999999875541 1
Q ss_pred -HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc-hHHHHHHHHHHhCCChHH
Q 015907 261 -FEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI-QVELLLGKAYSDGGRVSD 338 (398)
Q Consensus 261 -~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~ 338 (398)
..++..+|.+|...|++++|+.+|++++......+. ..... .++.++|.+|..+|++++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-------------------~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-------------------NEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-------------------CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-------------------cccchHHHHHhHHHHHHHHhhHHH
Confidence 568999999999999999999999999865432211 00001 466679999999999999
Q ss_pred HHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 015907 339 AVAVYDRLISSYPN------DFRGYLAKGIILKENGKVGDA-ERMFIQARFFA 384 (398)
Q Consensus 339 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 384 (398)
|+.++++++++.+. ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 215 Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 99999999987543 267899999999999999999 88899998753
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=8.6e-15 Score=129.02 Aligned_cols=175 Identities=11% Similarity=-0.029 Sum_probs=144.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD--- 225 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 225 (398)
|.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..++++++..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 45556677889999999999999999999999887764 346778899999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 226 ---PDVFRLLGEVKYELKDYEGSAAAYRVST---MVSKDINF----EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 226 ---~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..++..+|.+|...|++++|+.+|++++ ...|+ +. .++.++|.+|..+|++++|+.++++++.......
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 44554 33 5889999999999999999999999988653220
Q ss_pred CCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHH-HHHHHHHHHh
Q 015907 296 SDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDA-VAVYDRLISS 349 (398)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 349 (398)
. ...-..++..+|.+|..+|++++| ..+|++++.+
T Consensus 231 ~-------------------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 S-------------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp B-------------------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred c-------------------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 0 111135667799999999999999 8889999864
No 129
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=1.2e-15 Score=116.49 Aligned_cols=112 Identities=10% Similarity=0.127 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PD 227 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 227 (398)
++.+.++..+|..++..|++++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..++++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34566888999999999999999999999999999999999999999999999999999999999998765 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++..+|.++..+|++++|+.+|++++...|+ ++....+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHH
Confidence 7889999999999999999999999999886 55554443
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=1.1e-15 Score=133.74 Aligned_cols=173 Identities=9% Similarity=-0.051 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|.++..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+ +..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.++...|++++|+..|++++...+..+. .. ...+ +... ...++..+......
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~-------------------~~-~~~~--~~~~------~~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRL-------------------NF-GDDI--PSAL------RIAKKKRWNSIEER 131 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------------CC-CSHH--HHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchh-------------------hH-HHHH--HHHH------HHHHHHHHHHHHHH
Confidence 9999999999999999999886654321 00 1111 1111 12223333334445
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 349 SYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 349 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
..|.+..+...++.++ .|++++|++.++++++++|++.....
T Consensus 132 ~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~ 173 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRA 173 (281)
T ss_dssp CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTH
T ss_pred HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhh
Confidence 6778888888887765 69999999999999999998765443
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.65 E-value=4.2e-15 Score=124.28 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|..+...|++++|+..|++++ .| ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34467889999999999999999999986 33 7889999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCH----------------HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINF----------------EVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
...|++++|+..|++++...|. +. .++..+|.++...|++++|+..|++++..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999998887 55 89999999999999999999999998653
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=4.6e-15 Score=130.75 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----HHHHH
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPD------VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N----FEVLR 265 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~ 265 (398)
..+..+...|++++|+..++++++..+..+. .+..+|.++...+++++|+.+|++++...+.. + ..++.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456667777888888888877776665544 23357788888888888888888888864431 1 33688
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHH
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDR 345 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 345 (398)
++|.+|...|++++|+.+|+++++.....+. .......++.++|.+|..+|++++|+.++++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHD------------------NEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccc------------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999998875432211 0011123566799999999999999999999
Q ss_pred HHHhCCCC------hHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhC
Q 015907 346 LISSYPND------FRGYLAKGIILKENGK-VGDAERMFIQARFFA 384 (398)
Q Consensus 346 al~~~p~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 384 (398)
++++.+.. ..+++++|.+|..+|+ +++|+.+|++++.+.
T Consensus 222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99875433 7899999999999995 699999999999763
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=3.2e-16 Score=129.77 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=118.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS----------------TALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
+.....+..+|..++..|++++|+..|++++...|.++ .++..+|.++...|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667889999999999999999999999999999887 89999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 219 AKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 219 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
++++|.+..+++.+|.++..+|++++|+.+|++++.++|+ +..++..++.++...++..++.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999999999888877766
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.6e-16 Score=148.85 Aligned_cols=187 Identities=8% Similarity=-0.011 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNV----------LQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
.++|+..+.+++.++ |.+..+|+.++.++...|+ +++++.+++++++.+|++..+|+..+.
T Consensus 45 ~eeal~~~~~~l~~n---------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 45 DESVLELTSQILGAN---------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp SHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC---------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467888899999999 9999999999999999998 999999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc---
Q 015907 201 TLAELG--DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK-DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA--- 274 (398)
Q Consensus 201 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~--- 274 (398)
++...+ +++++++++.++++.+|.+..+|...+.++...| .++++++++.++++.+|. +..+|..++.++...
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccc
Confidence 999999 7799999999999999999999999999999999 999999999999999999 999999999999875
Q ss_pred -----------CCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHH-----
Q 015907 275 -----------KKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSD----- 338 (398)
Q Consensus 275 -----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----- 338 (398)
+.++++++++.+++... ++...+|++++.++...+++++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-------------------------P~~~saW~y~~~ll~~~~~~~~~~~~~ 249 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTD-------------------------PNDQSAWFYHRWLLGRAEPHDVLCCVH 249 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHC-------------------------SSCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhC-------------------------CCCccHHHHHHHHHhcCCCccceeeee
Confidence 55789999999997633 2335688889999999988776
Q ss_pred -------HHHHHHHHHHhCCC
Q 015907 339 -------AVAVYDRLISSYPN 352 (398)
Q Consensus 339 -------A~~~~~~al~~~p~ 352 (398)
|+.+|.+++.++|.
T Consensus 250 ~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 250 VSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp EETTTTEEEEEEEEEECTTBT
T ss_pred eccCCceEEEEeccceecccc
Confidence 56667777776765
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.64 E-value=1.4e-14 Score=109.48 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
....++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
...|++++|+.+|++++..+|. ++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 9999999999999999999999 9999999999887654
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=2.2e-14 Score=119.86 Aligned_cols=149 Identities=15% Similarity=0.055 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
..++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+.+|++++..+|. ++.++..+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 457889999999999999999999995 33 7889999999999999999999999999999999 9999999999999
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
..|++++|+..|++++...+..+.... ........|. .++..+|.++...|++++|+.+|+++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY-----------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC-----------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH-----------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999886654421000 0000112222 566679999999999999999999999999
Q ss_pred CCChHH
Q 015907 351 PNDFRG 356 (398)
Q Consensus 351 p~~~~~ 356 (398)
|++...
T Consensus 152 p~~~~~ 157 (213)
T 1hh8_A 152 SEPRHS 157 (213)
T ss_dssp CSGGGG
T ss_pred cccccc
Confidence 987543
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=2.3e-15 Score=122.15 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=114.4
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV-KYELKDY-- 242 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~-- 242 (398)
..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3345789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 243 EGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 243 ~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
++|+.+|++++..+|. +..++..+|.++...|++++|+..|++++...+
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999 999999999999999999999999999976433
No 138
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.64 E-value=4.7e-14 Score=122.41 Aligned_cols=185 Identities=14% Similarity=0.056 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 177 RLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKP--SDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 177 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
|+..|++.+...+....++..+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88999999887767777888999999999999999999999999887 7889999999999999999999999999999
Q ss_pred hCC-----CCCHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHH
Q 015907 255 VSK-----DINFEVLRGLTNALLAAK--KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELL 325 (398)
Q Consensus 255 ~~p-----~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 325 (398)
.+| +........-+++....| ++.+|...|+++.. ..|. .....
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---------------------------~~p~~~~~~lL 217 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---------------------------TFPTWKTQLGL 217 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---------------------------TSCSHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---------------------------hCCCcccHHHH
Confidence 998 212333333454566666 99999999988733 3343 23333
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISS----------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKAL 391 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 391 (398)
+. ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++-+.
T Consensus 218 ln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 218 LN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 44 899999999999999988776 48899999999999999998 89999999999999998654
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.64 E-value=2.9e-15 Score=113.41 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCH
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINF 261 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~ 261 (398)
.|++++|+..|+++++++|+ +.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~-~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ-YE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcC-CC
Confidence 99999999999999999997 43
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=3.5e-16 Score=146.62 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=144.0
Q ss_pred hHHHHHHhhcc----hhhcCCCchhhhhhhcch---------------hhc-HHHHHHHHHHHHhccCCCCCCCCCCChH
Q 015907 99 KKAEEIKEFGP----IDYDAPIETEKKTIGLGT---------------KIG-VGVAVVIFGLVFALGDFLPSGSVSPTEE 158 (398)
Q Consensus 99 ~~~eA~~~~~~----~~~~~p~~~~~~~~~lg~---------------~~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~ 158 (398)
..++|+..++. ++...|.. ++.. .|. .++ ++.|+..|..++... |...
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~-~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~---------~~~a 268 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGE-AGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEK---------LEQA 268 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCS-SCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHH---------HHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCC-CCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHH---------HHHH
Confidence 45567777776 66677653 2221 221 133 556666666666666 8888
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------------STALEGAAVTLAELGDYTRAVSLLQDLAKEKP 223 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 223 (398)
..+..+|..++..|++++|+..|++++.++|.+ ..+|.++|.+|..+|++++|+..|+++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
++..+++.+|.+|..+|++++|+..|+++++++|+ +..++..++.++...+++++|...
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999888754
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.63 E-value=2e-14 Score=107.59 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK 236 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 236 (398)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 237 YELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 237 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
...|++++|+..|++++..+|+ ++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence 9999999999999999999999 999998888765
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=3.4e-15 Score=121.09 Aligned_cols=126 Identities=7% Similarity=0.046 Sum_probs=117.0
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVT-LAELG 206 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g 206 (398)
.| ++.|+..+..++... |.++.+|+.+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|
T Consensus 23 ~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 93 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN---------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS 93 (177)
T ss_dssp ----CCCCHHHHHHHHHC---------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 55 788888999999988 99999999999999999999999999999999999999999999999 88999
Q ss_pred CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 207 DY--TRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 207 ~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
++ ++|+..++++++.+|.+..++..+|.++...|++++|+..|++++..+|+ +....
T Consensus 94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 152 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP-RINRT 152 (177)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TSCHH
T ss_pred CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CccHH
Confidence 99 99999999999999999999999999999999999999999999999998 55433
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.5e-14 Score=127.46 Aligned_cols=172 Identities=10% Similarity=-0.017 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST------ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------P 226 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 226 (398)
..+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 34455678889999999999999999998877765 33458889999999999999999999965432 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchh
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVS---KD---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLS 300 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 300 (398)
.++..+|.+|...|++++|+.+|++++... |. ....++.++|.+|..+|++++|+.++++++...+....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---- 231 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---- 231 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----
Confidence 478999999999999999999999999532 11 13458899999999999999999999999886543311
Q ss_pred hhccccccccccccccCCCchHHHHHHHHHHhCCC-hHHHHHHHHHHHHh
Q 015907 301 VKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR-VSDAVAVYDRLISS 349 (398)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 349 (398)
......++..+|.+|..+|+ +++|+.+|++++.+
T Consensus 232 ---------------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 ---------------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 11123567779999999995 69999999999874
No 144
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=7e-16 Score=139.67 Aligned_cols=224 Identities=12% Similarity=0.038 Sum_probs=77.8
Q ss_pred HHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHH
Q 015907 100 KAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQ 175 (398)
Q Consensus 100 ~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 175 (398)
.++|.+.++++ +++..|.. +|.. .| +.+|+..|.++ .++..+...+..+...|+++
T Consensus 19 ld~A~~fae~~-----~~~~vWs~-La~A~l~~g~~~eAIdsfika--------------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQ-LAKAQLQKGMVKEAIDSYIKA--------------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHH-HHHHHHHcCCHHHHHHHHHcC--------------CCHHHHHHHHHHHHhCCCHH
Confidence 45555555555 22345555 5555 45 77777777542 23446667777777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|+.+++.+++..++ +.+...++.+|.+.|++.++.++++. |+ ..+|..+|..+...|.|++|..+|.++
T Consensus 79 eAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 79 ELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 777777777664333 56666777777777777777766642 32 347777777777777777777777755
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCC
Q 015907 256 SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGR 335 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 335 (398)
..|..++.++..+|++++|++.++++ . ....|..++.++...|+
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA-----------------------------~-~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA-----------------------------N-STRTWKEVCFACVDGKE 192 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH-----------------------------T-CHHHHHHHHHHHHHTTC
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc-----------------------------C-CchhHHHHHHHHHHcCc
Confidence 24567777777777777777777665 0 12344446666777777
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 336 VSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 336 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++.|..+... +..+|+ -...+..+|.+.|++++|+.++++++.+++.+..+|..
T Consensus 193 f~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~fte 246 (449)
T 1b89_A 193 FRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 246 (449)
T ss_dssp HHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 7777655554 223333 23356667777777777777777777777776666654
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-14 Score=110.23 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+ ++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHh
Q 015907 269 NALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.++...|++++|+..|++++...
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999997754
No 146
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.62 E-value=3.9e-15 Score=115.71 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPK-------DST-----ALEGAAVTLAELGDYTRAVSLLQDLAKE---- 221 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 221 (398)
...+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346788999999999999999999999999998 433 8888999999999999999999998888
Q ss_pred ---CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 222 ---KPSDPDVF----RLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 222 ---~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+|++..+| +++|.++..+|++++|+..|+++++++|+ +..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~-d~~ 137 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE-RKG 137 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-CCS
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHH
Confidence 88888888 88888888888888888888888888877 443
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=5.3e-15 Score=118.18 Aligned_cols=118 Identities=8% Similarity=0.062 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSI------------------SPKDSTALEGAAVTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 217 (398)
..+..+..+|..++..|++++|+..|.+++.. +|....++.++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45678899999999999999999999999998 666778999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHc
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF-EVLRGLTNALLAA 274 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~la~~~~~~ 274 (398)
+++++|.++.+++.+|.++..+|++++|+..|++++.++|+ +. .+...++.+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-AASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 77 5666776665443
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.61 E-value=8.8e-16 Score=127.13 Aligned_cols=160 Identities=11% Similarity=-0.025 Sum_probs=108.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCH---------------
Q 015907 197 GAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINF--------------- 261 (398)
Q Consensus 197 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------- 261 (398)
..+.+....|++++|.+.+.......+.....+..+|.++...|++++|+..|++++.+.|. ++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHH
Confidence 33444455566666666555544444445556666677777777777777777777766665 44
Q ss_pred -HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHH
Q 015907 262 -EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAV 340 (398)
Q Consensus 262 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 340 (398)
.++..+|.++...|++++|+.++.+++... .....+++.+|.+|...|++++|+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------------------p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-------------------------KNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------------------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------------cccHHHHHHHHHHHHHcccHHHHH
Confidence 789999999999999999999999997632 222356777999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 015907 341 AVYDRLISSYPNDFRGYLAKGIILKENGKVGDAE-RMFIQARF 382 (398)
Q Consensus 341 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 382 (398)
.+|+++++++|++..++..++.++..+++..++. ..|.+.+.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999888877 44555444
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-14 Score=111.27 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=112.1
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
.|.....++.+|..+...|++++|+.+|++++..+|++ ..++..+|.++...|++++|+..++++++..|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 37788999999999999999999999999999999988 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015907 231 LLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALL 272 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~ 272 (398)
.+|.++...|++++|+.+|++++.++|+ +..++..++.+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHh
Confidence 9999999999999999999999999999 9999888877654
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=5.7e-14 Score=112.16 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
+..+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|++++..+|. ++.++..+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666666665 555555555555
Q ss_pred HHcCCchHHHHHHHHH
Q 015907 272 LAAKKPDEAVQFLLAS 287 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a 287 (398)
...|++++|+.+|+++
T Consensus 92 ~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 92 MALGKFRAALRDYETV 107 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 5555555555555444
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.59 E-value=2.2e-14 Score=110.85 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC----CHHHHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDI----NFEVLRGLTNAL 271 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~la~~~ 271 (398)
++...|++++|+..|++++.++|+. +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987751 234444444443
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.59 E-value=5.4e-14 Score=107.40 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLL 232 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 232 (398)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 233 GEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 233 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
|.++...|++++|+..|++++...|+ +..+......+....+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG-SDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 8877766665554443
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=3.1e-13 Score=136.21 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=170.9
Q ss_pred hHHHHHHhhcchhhcCCCchhhhhhhcchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH
Q 015907 99 KKAEEIKEFGPIDYDAPIETEKKTIGLGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL 174 (398)
Q Consensus 99 ~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 174 (398)
.+++|.+.+.. .+.+..|.. +|.. .| +.+|+..|.++ +++..|..+|.++...|++
T Consensus 1091 nldrAiE~Aer-----vn~p~vWsq-LAKAql~~G~~kEAIdsYiKA--------------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1091 NLDRAYEFAER-----CNEPAVWSQ-LAKAQLQKGMVKEAIDSYIKA--------------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred hHHHHHHHHHh-----cCCHHHHHH-HHHHHHhCCCHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCH
Confidence 34445554443 355777776 7777 67 99999999774 6677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++|+++|..+.+..++ +.+-..+|.+|.+++++++ ++.|. ...+...+..+|..+...|+|++|..+|.++
T Consensus 1151 EEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 9999999999987744 2233347777777777774 33332 1223455566777777778888887777764
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc-ccccccCCCchHHHHHHHHHHhC
Q 015907 255 VSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK-ETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
..|..++.++...|++++|++.++++.....-..-.......+.+.... ....+..+| +....++..|...
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~-deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-DELEELINYYQDR 1293 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCH-HHHHHHHHHHHHc
Confidence 3567777777777777777777766622100000000000000000000 000011222 2333588999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CChHHHHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKE--NGKVGDAERMFIQARFFAP-----EKVKALVD 393 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 393 (398)
|.+++|+.++++++.++|.+...+..+|.+|.+ -++..+++++|...+.+.| +....|..
T Consensus 1294 G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 999999999999999999999999888888865 4667788888888877766 55555543
No 154
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=6.9e-16 Score=139.71 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=80.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.| ++.|..++++. +++.+|..+|.++...|++++|+..|.++ +++..+...+..+...|+
T Consensus 16 ~~~ld~A~~fae~~--------------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 16 IGNLDRAYEFAERC--------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC--------------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCC
Confidence 56 77788887776 22358999999999999999999999774 466789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+++|+.+++.+.+..++ +.+...++.+|.++|++.++.++++ .|+ ..+|..+|..+...|.|++|..+|.++
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn--~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-----CC------------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999886444 7788899999999999999998885 354 569999999999999999999999654
Q ss_pred HHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 288 RERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
..+..+|.++.++|++++|++.++++ .++.+|...+.++...
T Consensus 149 ---------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 149 ---------------------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp ---------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred ---------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 35667999999999999999999999 4789999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHhhhc
Q 015907 368 GKVGDAERMFIQARFFAPEKVKALVDQYSK 397 (398)
Q Consensus 368 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 397 (398)
|+++.|..+... +...|++....+++|.+
T Consensus 191 ~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 191 KEFRLAQMCGLH-IVVHADELEELINYYQD 219 (449)
T ss_dssp TCHHHHHHTTTT-TTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHhCHhhHHHHHHHHHH
Confidence 999999887775 44778777777777754
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=2.2e-14 Score=118.81 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=127.7
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE------KPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 241 (398)
++..|++++|...++......+....++..+|.++...|++++|+.++++++.+ .|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356799999999666555533366889999999999999999999999999984 33446789999999999999
Q ss_pred HHHHHHHHHHHHhh---CCC---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccc
Q 015907 242 YEGSAAAYRVSTMV---SKD---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQ 315 (398)
Q Consensus 242 ~~~A~~~~~~al~~---~p~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (398)
+++|+.++++++.+ .++ ....++..+|.++...|++++|+.++++++........
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------- 142 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD------------------- 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-------------------
Confidence 99999999999988 442 13457899999999999999999999999875432210
Q ss_pred cCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 316 KVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 316 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
.......+..+|.++...|++++|+.++++++++..
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 000012345699999999999999999999987543
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=7e-14 Score=111.83 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.+.++..++.+|.++...|++++|+.+|+++++++|+++.+|..+|.++...|++++|+.+|++++.++|+ +..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 268 TNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
|.++...|++++|+.+|++++...+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998855433
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=5.6e-14 Score=107.64 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.|.++.++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.++++++..+|. +..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHH
Q 015907 268 TNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 268 a~~~~~~~~~~~A~~~~~~a~~ 289 (398)
|.++...|++++|+.+|++++.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999866
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=4.5e-14 Score=107.75 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC-------HHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN-------FEV 263 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~ 263 (398)
...++..+|.+++..|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+ + ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999876 3 347
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
+..+|.++...|++++|+.+|++++.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88999999999999999999999876
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.57 E-value=1.4e-13 Score=106.19 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=100.5
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
..+|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+ ++.++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 266 GLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 266 ~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
.+|.++...|++++|+..|++++...+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999999886654
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.56 E-value=5.8e-14 Score=107.06 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|. ++.++..+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555554 44444444444
Q ss_pred HHHcCCchHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLA 286 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~ 286 (398)
+...|++++|+.+|++
T Consensus 90 ~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 4444444333333333
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.56 E-value=3.6e-14 Score=117.46 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=128.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHHcC
Q 015907 202 LAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV------SKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~la~~~~~~~ 275 (398)
+...|++++|...++.+....+....++..+|.++...|++++|+.++++++.+ .|. ...++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA-EHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHcC
Confidence 356899999999665554433366789999999999999999999999999984 233 4668999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCC---chHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC
Q 015907 276 KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDP---IQVELLLGKAYSDGGRVSDAVAVYDRLISSYPN 352 (398)
Q Consensus 276 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 352 (398)
++++|+.++++++......+ .++ ..++..+|.++...|++++|+.++++++...+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~---------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLP---------------------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSC---------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC---------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999988654221 112 234556999999999999999999999975332
Q ss_pred --C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015907 353 --D----FRGYLAKGIILKENGKVGDAERMFIQARFFAP 385 (398)
Q Consensus 353 --~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 385 (398)
+ ..++..+|.++...|++++|+.++++++.+..
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 34568999999999999999999999998743
No 162
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=6.9e-14 Score=108.69 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-------DPD-----VFRLLGEVKYELKDYEGSAAAYRVSTMV---- 255 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 255 (398)
...+..+|..+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCCHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 256 ---SKDINFEVL----RGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 256 ---~p~~~~~~~----~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
+|+ +..+| +++|.++..+|++++|+..|++++++.+...
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 999 99999 9999999999999999999999999877653
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.55 E-value=8.2e-14 Score=106.26 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-------PDV 228 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 228 (398)
..+..++.+|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK 275 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~ 275 (398)
+..+|.++...|++++|+.+|++++...|+ +..+..++.+....+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999885 777888877765443
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.9e-13 Score=127.18 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----------------TALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
.+.+..|..+...|++++|+..|.++++..|... .++..+|.+|...|++++|++++.++++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999887653 36889999999999999999999999987
Q ss_pred CCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 222 KPSDP------DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 222 ~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
.+... .+...++.++...|+++.|+.++++++...+. ....++..+|.++...|++++|+..+.++...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 65432 34566788888899999999999999876432 13568899999999999999999999998776
Q ss_pred hcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCC---CC----hHHHHHHHHH
Q 015907 291 LSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYP---ND----FRGYLAKGII 363 (398)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~ 363 (398)
.....+ ......++..+|.+|...|++++|..++++++...+ .. ...+..+|.+
T Consensus 165 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 165 FKKLDD-------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HTTSSC-------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHhccc-------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 543311 111124566699999999999999999999987643 22 3567788999
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 015907 364 LKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 364 ~~~~g~~~~A~~~~~~al~~ 383 (398)
+...|++++|..+|.+++..
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=6e-14 Score=106.04 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+ ++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchHHHHHHHHHHHH
Q 015907 274 AKKPDEAVQFLLASRER 290 (398)
Q Consensus 274 ~~~~~~A~~~~~~a~~~ 290 (398)
.|++++|+..|+++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=4.5e-15 Score=139.06 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---------------HHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---------------FEVLRGLTNA 270 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~la~~ 270 (398)
+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++.+.|. + ..++.++|.+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555 4 6899999999
Q ss_pred HHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhC
Q 015907 271 LLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSY 350 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 350 (398)
+..+|++++|+.+|.+++...+ +...+++.+|.+|..+|++++|+..|+++++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p-------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS-------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhcCC-------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999977322 224567779999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHH
Q 015907 351 PNDFRGYLAKGIILKENGKVGDAERM 376 (398)
Q Consensus 351 p~~~~~~~~la~~~~~~g~~~~A~~~ 376 (398)
|++..++..++.++..+|++++|...
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888753
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=5.6e-14 Score=104.07 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRLL 232 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 232 (398)
|.++..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.+++++++..|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHhhCCC
Q 015907 233 GEVKYEL-KDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 233 a~~~~~~-g~~~~A~~~~~~al~~~p~ 258 (398)
|.++... |++++|+.++++++...|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999999999887
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.54 E-value=5.3e-15 Score=139.15 Aligned_cols=131 Identities=8% Similarity=0.055 Sum_probs=118.8
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
+..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..++++++++|+++.+++.+|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH--HHHcCCchHHHHHHHH
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA--LLAAKKPDEAVQFLLA 286 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~--~~~~~~~~~A~~~~~~ 286 (398)
+|..+|++++|+..|+++++++|+ +..++..++.+ +...|++++|+..+++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999 88899999888 8889999999999873
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=6.5e-13 Score=100.21 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccc
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRS 306 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (398)
.++..+|.++...|++++|+..|++++...|. +..++..+|.++...|++++|+.+++++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 73 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------- 73 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------
Confidence 34444444444444444444444444444444 44444444444444444444444444443311
Q ss_pred ccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 015907 307 GDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKEN 367 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 367 (398)
......+..+|.++...|++++|+.+|++++..+|++..++..++.++...
T Consensus 74 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 74 ----------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ----------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 011123333555555555555555555666666666666666666665544
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.53 E-value=7.1e-14 Score=108.36 Aligned_cols=99 Identities=15% Similarity=0.231 Sum_probs=90.1
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 015907 168 EEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDY----------TRAVSLLQDLAKEKPSDPDVFRLLGEVKY 237 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~ 237 (398)
..+.+.+++|+..++++++++|+++++|.++|.++...+++ ++|+..|+++++++|+...+|+++|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999875 59999999999999999999999999999
Q ss_pred Hcc-----------CHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 015907 238 ELK-----------DYEGSAAAYRVSTMVSKDINFEVLRGL 267 (398)
Q Consensus 238 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~l 267 (398)
.+| ++++|+.+|+++++++|+ +...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~-~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 885 899999999999999999 76554443
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=3e-14 Score=107.09 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=88.1
Q ss_pred HhccHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 170 EKNVLQTRLKKYEETLSI---SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
..|++++|+.+|+++++. +|+++.++..+|.+|..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
..|++++...|+ ++........+
T Consensus 82 ~~~~~al~~~p~-~~~~~~~~~ai 104 (117)
T 3k9i_A 82 ELLLKIIAETSD-DETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHCC-CHHHHHTHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHH
Confidence 999999999999 87765433333
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=1.1e-13 Score=125.61 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLS----------------ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 77888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 015907 222 KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQF 283 (398)
Q Consensus 222 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~ 283 (398)
+|+++.+++.+|.+|..+|++++|+..|+++++++|+ +..++..++.++...++++++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 999999999999998888777654
No 173
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=2.4e-12 Score=124.95 Aligned_cols=229 Identities=9% Similarity=-0.045 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRL-KKYEETLSISPKDSTALEGAAVTLAELGDYTRA 211 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 211 (398)
.....|++++... |..+..|+..+..+...|+.++|. ..|++++...|.+...|..++......|++++|
T Consensus 327 Rv~~~Ye~aL~~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 327 RMTYVYMQAAQHV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3457899999888 999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-----------CC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCCHHHHHHHH
Q 015907 212 VSLLQDLAKEK-----------PS-----------DPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SKDINFEVLRGLT 268 (398)
Q Consensus 212 ~~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~la 268 (398)
..+|++++... |. ...+|...+......|+.+.|...|.++++. .+. ...+|...+
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A 476 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 99999999752 43 3457888899888999999999999999987 333 567787777
Q ss_pred HHHHHcC-CchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHH
Q 015907 269 NALLAAK-KPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 269 ~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 347 (398)
.+....+ +++.|..+|+.+++..+.. ...+...+......|+.+.|..+|++++
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p~~-------------------------~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFATD-------------------------GEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTTC-------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCCCc-------------------------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777665 4899999999998754322 3444457777888899999999999999
Q ss_pred HhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH--HHHHhhh
Q 015907 348 SSYPN---DFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK--ALVDQYS 396 (398)
Q Consensus 348 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~ 396 (398)
...|+ ...+|......-...|+.+.+..+++++.+..|+++. .+.++|+
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 98873 5678888899999999999999999999999998754 3455553
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=2e-14 Score=129.26 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=95.1
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDS-----------------TALEGAAVTLAELGDYTRAVSLLQD 217 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 217 (398)
+.....+..+|..++..|++++|+.+|++++...|++. .++.++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567889999999999999999999999999999877 4899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH-HHcCCchHHHHHHHHHHHHhc
Q 015907 218 LAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL-LAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 218 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~ 292 (398)
+++++|++..+|+.+|.+|..+|++++|+..|++++.++|+ +..++..++.+. ...+..+++...|.+++...+
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999 999999999884 456677888888887755433
No 175
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=2.1e-12 Score=96.38 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNA 270 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~ 270 (398)
.+..+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|. ++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCchHHHHHHHHHHH
Q 015907 271 LLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 271 ~~~~~~~~~A~~~~~~a~~ 289 (398)
+...|++++|+.++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998854
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=3.3e-13 Score=126.94 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=132.8
Q ss_pred cchh---hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 015907 125 LGTK---IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAV 200 (398)
Q Consensus 125 lg~~---~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 200 (398)
+|.. .| +++|+..|.+++.+. |.+..+|..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN---------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5554 67 999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHccCHHHHHHHHH-----------HHHhhCCCC--------
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV--KYELKDYEGSAAAYR-----------VSTMVSKDI-------- 259 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~-------- 259 (398)
+|..+|++++|+..|+++++++|++..++..++.+ +...|++++|+..++ +++.+.|..
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999988 888999999999999 777776651
Q ss_pred --CHHHHHHHHHHHHHcCCch--HHHHHHHHHHHHhcCCCC
Q 015907 260 --NFEVLRGLTNALLAAKKPD--EAVQFLLASRERLSTGKS 296 (398)
Q Consensus 260 --~~~~~~~la~~~~~~~~~~--~A~~~~~~a~~~~~~~~~ 296 (398)
....+..+...+...+... .+..++.++.+++...+.
T Consensus 163 ~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~ 203 (477)
T 1wao_1 163 KVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLST 203 (477)
T ss_dssp SCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCC
Confidence 1223344445555555544 444577777777766544
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=4e-13 Score=107.16 Aligned_cols=98 Identities=18% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE------------------KPSDPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
...+..+|..++..|+|++|+..|.+++.+ +|....++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999998 66677899999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 254 ~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
.++|. ++.+++.+|.++...|++++|+..|++++.+
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999 9999999999999999999999999999663
No 178
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=3.1e-12 Score=111.03 Aligned_cols=183 Identities=10% Similarity=-0.047 Sum_probs=139.5
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISP--KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS----DPDV 228 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 228 (398)
+....+++.+|.++...|++++|+.++.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +..+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 44456678999999999999999999999999987 78899999999999999999999999999999883 2334
Q ss_pred HHHH--HHHHHHcc--CHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcc
Q 015907 229 FRLL--GEVKYELK--DYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDG 304 (398)
Q Consensus 229 ~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 304 (398)
...+ +.+....| ++.+|..+|+++....|+ .......+. ++..+|++++|...++.+.+..+...+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~-------- 246 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQ-------- 246 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTT--------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccc--------
Confidence 4444 44466666 999999999999887775 222222223 899999999999999876543221000
Q ss_pred ccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHH
Q 015907 305 RSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358 (398)
Q Consensus 305 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 358 (398)
....+|. +...+++.+....|+ +|.++++++.+.+|+++.+.-
T Consensus 247 ---------k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 247 ---------KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ---------CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ---------cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 0000234 455567777777887 899999999999999986543
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.46 E-value=6.8e-13 Score=105.03 Aligned_cols=137 Identities=16% Similarity=0.086 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD------STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---- 225 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 225 (398)
....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345678999999999999999999999999876543 2488999999999999999999999999875432
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhc
Q 015907 226 --PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLS 292 (398)
Q Consensus 226 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 292 (398)
..++..+|.++...|++++|+.++++++...+.. ...++..+|.++...|++++|+.+++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999874320 245788999999999999999999999987654
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-12 Score=100.40 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD---PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
...|.+...+..+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++..+|+ +..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHH
Confidence 3457889999999999999999999999999999999987 889999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 263 VLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 263 ~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
++..+|.++...|++++|+.+|++++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999763
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.5e-12 Score=119.48 Aligned_cols=218 Identities=10% Similarity=-0.009 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHH
Q 015907 86 ERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKE 165 (398)
Q Consensus 86 ~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la 165 (398)
.+++.++.....+++.+|++.|.+++...|...+.... .+.. .... +....++..+|
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-~~~~---~~~~-------------------~~~~~al~~l~ 62 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-ASVD---DKRR-------------------NEQETSILELG 62 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-SSBC---SHHH-------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-HHHH---HHHh-------------------hhHHHHHHHHH
Confidence 36778888888999999999999999999887766543 2222 0000 12223567899
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDS------TALEGAAVTLAELGDYTRAVSLLQDLAKEKP------SDPDVFRLLG 233 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la 233 (398)
.+|...|++++|+.++.+++...+... .+...++.++...|++++|+.++++++...+ ....++..+|
T Consensus 63 ~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 999999999999999999988755442 3566788888889999999999999987532 2356889999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhC------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccc
Q 015907 234 EVKYELKDYEGSAAAYRVSTMVS------KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSG 307 (398)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (398)
.++...|++++|+.++++++... +. ...++..++.+|...|++++|..++++++...+..
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------- 208 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPS-LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI------------- 208 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC-------------
Confidence 99999999999999999998762 22 46689999999999999999999999998765422
Q ss_pred cccccccccCCCc----hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 308 DKKETEPQKVDPI----QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 308 ~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
.+|. ..+..+|.++...|++.+|..+|.++++.
T Consensus 209 ---------~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 209 ---------YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp ---------CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222 33445899999999999999999999864
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=2.4e-12 Score=98.06 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC---HHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP---DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN---FEVLRG 266 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~ 266 (398)
.+++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|++++..+|+ + +.+++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHH
Confidence 3578899999999999999999999999999988 79999999999999999999999999999999 7 889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 267 LTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
+|.++...|++++|+..|++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999986643
No 183
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=1.6e-11 Score=119.13 Aligned_cols=189 Identities=8% Similarity=-0.132 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 174 LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV-SLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 174 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
.+.....|++++...|..+.+|...+..+...|+.++|. ..|++++...|.+...|..++......|+++.|...|+++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455678999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred HhhC-----------CC----------CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccc
Q 015907 253 TMVS-----------KD----------INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKE 311 (398)
Q Consensus 253 l~~~-----------p~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 311 (398)
+..- |. ....+|...+.+..+.|..+.|..+|.+|++..+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------------------- 465 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------------------- 465 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-------------------
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------------------
Confidence 9752 42 0245788889998999999999999999976311
Q ss_pred cccccCCCchHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015907 312 TEPQKVDPIQVELLLGKAYSDGG-RVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 312 ~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 386 (398)
.....++...+.+-...+ +++.|..+|+.+++..|+++..|..++......|+.+.|..+|++++...|+
T Consensus 466 -----~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 466 -----LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp -----GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred -----CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 112345555666666655 5999999999999999999999999999999999999999999999998884
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.43 E-value=1.4e-12 Score=96.31 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=97.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHH
Q 015907 187 ISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLR 265 (398)
Q Consensus 187 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 265 (398)
++|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|+++++..|.. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 3688889999999999999999999999999999999999999999999999999999999999999998851 488999
Q ss_pred HHHHHHHHc-CCchHHHHHHHHHHHHh
Q 015907 266 GLTNALLAA-KKPDEAVQFLLASRERL 291 (398)
Q Consensus 266 ~la~~~~~~-~~~~~A~~~~~~a~~~~ 291 (398)
.+|.++... |++++|+.+++++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 999999999 99999999998885543
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.42 E-value=1.2e-12 Score=103.56 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-C----
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-N---- 260 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~---- 260 (398)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.+.. +
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4577888999999999999999999988875432 2477888899999999999999999888765431 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 015907 261 FEVLRGLTNALLAAKKPDEAVQFLLASRER 290 (398)
Q Consensus 261 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 290 (398)
..++..+|.++...|++++|+.++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346677777777777777777777777654
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=2.7e-13 Score=121.77 Aligned_cols=158 Identities=13% Similarity=0.000 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
+.....+..+|..+...|+|++|+..|++++...|.+.. +...+++.++...+. ..++.++|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 445778899999999999999999999999998886541 223344455443331 24789999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.++..+|++++|+.+|++++... .+...+++.+|.+|..+|++++|+..|+++++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999997632 22245677799999999999999999999999
Q ss_pred hCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 349 SYPNDFRGYLAKGIIL-KENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 349 ~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999984 5567788999999999999998764
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=1.9e-12 Score=100.39 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcCCCCHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL----------QTRLKKYEETLSISPKDSTALEG 197 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~ 197 (398)
.+ +++|+..+.+++.++ |.++.+|+++|.++...+++ ++|+..|+++++++|++..+|+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~---------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN---------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 34 888999999999999 99999999999999998875 59999999999999999999999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHH
Q 015907 198 AAVTLAELG-----------DYTRAVSLLQDLAKEKPSDPDV 228 (398)
Q Consensus 198 la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~ 228 (398)
+|.+|..+| ++++|+.+|+++++++|++...
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999999885 8999999999999999997533
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=2.7e-12 Score=97.72 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGR 305 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (398)
+..+..+|.++...|++++|+.+|++++..+|. ++.++..+|.++...|++++|+.++++++...+..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 73 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--------- 73 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT---------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch---------
Confidence 455666677777777777777777777777766 6667777777777777777777777666554332100
Q ss_pred cccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 015907 306 SGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENG 368 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 368 (398)
....-..++..+|.++...|++++|+.+|+++++..| +...+..++.+....+
T Consensus 74 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 74 ---------DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 0000024556699999999999999999999999988 6888888888776543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=6.5e-13 Score=99.67 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhc---cCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 131 VGVAVVIFGLVFAL---GDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 131 ~~~A~~~~~~a~~~---~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
+++|+..|.+++.+ . |.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|+
T Consensus 6 ~~~A~~~~~~al~~~~~~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQG---------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -CCCHHHHHHHHSSCCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCC---------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence 67888999999987 5 88889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
+++|+..+++++...|+++.+....
T Consensus 77 ~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 77 YEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999998765433
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=6.8e-12 Score=113.88 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
...+..+|..+...|++++|+..|++++++.+..+ .....+.....+|. ...++.++|.++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~-~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPV-ALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHH-HHHHHHHHHHHH
Confidence 56788899999999999999999999988533211 01112333345555 566666777777
Q ss_pred HHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 272 LAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 272 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..+|++++|+.+++++++ .+|. .+++.+|.+|..+|++++|+..|++++++
T Consensus 284 ~~~g~~~~A~~~~~~al~---------------------------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALE---------------------------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHT---------------------------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH---------------------------hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777766643 2232 34555777777777777777777777777
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHH
Q 015907 350 YPNDFRGYLAKGIILKENGKVGDAER 375 (398)
Q Consensus 350 ~p~~~~~~~~la~~~~~~g~~~~A~~ 375 (398)
+|++..++..++.++..+++++++..
T Consensus 337 ~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 337 APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877777776654
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.33 E-value=1.8e-11 Score=91.27 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 176 TRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 176 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|.+..+|..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHH
Q 015907 256 SKDI-NFEVLRGLTNAL 271 (398)
Q Consensus 256 ~p~~-~~~~~~~la~~~ 271 (398)
.|.. +......+...+
T Consensus 83 ~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 8741 344444444444
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=3.1e-11 Score=85.60 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
..+..++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+.+++++++.+|.++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666655
Q ss_pred HHHc
Q 015907 236 KYEL 239 (398)
Q Consensus 236 ~~~~ 239 (398)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.8e-12 Score=95.94 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCC------HHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDIN------FEVLRG 266 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~~ 266 (398)
.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|+ + ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 344444455555555555555555555555544445555555555555555555555555555544 4 444445
Q ss_pred HHHHHHHcCCchHHHHHH
Q 015907 267 LTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 267 la~~~~~~~~~~~A~~~~ 284 (398)
+|.++...|++++|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555544444444433
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=4.8e-12 Score=93.56 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD------PDVFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 230 (398)
.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 015907 231 LLGEVKYELKDYEGSAAAYRV 251 (398)
Q Consensus 231 ~la~~~~~~g~~~~A~~~~~~ 251 (398)
.+|.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877766654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.29 E-value=4e-11 Score=85.02 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++...|++++|+.+|++++.++|. +..++..+|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHcC
Q 015907 270 ALLAAK 275 (398)
Q Consensus 270 ~~~~~~ 275 (398)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.23 E-value=1.2e-10 Score=86.81 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
.|+..|.+++... |.++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+
T Consensus 3 ~a~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQG---------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTT---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 015907 213 SLLQDLAKEKPS--DPDVFRLLGEVKYE 238 (398)
Q Consensus 213 ~~~~~al~~~p~--~~~~~~~la~~~~~ 238 (398)
..|++++++.|. +......+...+..
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 74 QAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999998774 34444444444443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.21 E-value=8e-11 Score=85.37 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-CHHHHHH
Q 015907 188 SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDI-NFEVLRG 266 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~ 266 (398)
+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++|+..|++++.+.|.. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 577777777777777777777777777777777777777777777777777777777777777777765431 3344444
Q ss_pred HHHHHH
Q 015907 267 LTNALL 272 (398)
Q Consensus 267 la~~~~ 272 (398)
+..++.
T Consensus 83 l~~~l~ 88 (100)
T 3ma5_A 83 LQDAKL 88 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.16 E-value=8.2e-11 Score=85.02 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=72.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPKDST-ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELK 240 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 240 (398)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788888888888888888888888888888 88888888888888888888888888888888777643 5
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 015907 241 DYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~p~ 258 (398)
.+.+++..|++++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 567777777777776665
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=2.7e-10 Score=82.50 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 015907 154 SPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPS--DPDVFRL 231 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 231 (398)
.|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999998663 3444444
Q ss_pred HHHHHHH
Q 015907 232 LGEVKYE 238 (398)
Q Consensus 232 la~~~~~ 238 (398)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 200
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.10 E-value=6.2e-08 Score=91.19 Aligned_cols=84 Identities=7% Similarity=-0.090 Sum_probs=56.9
Q ss_pred HhHHHHHHhhcchhhcCCCchhhhhhhcchh--hc--HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH----
Q 015907 98 QKKAEEIKEFGPIDYDAPIETEKKTIGLGTK--IG--VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE---- 169 (398)
Q Consensus 98 ~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~--~g--~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~---- 169 (398)
++.+.+..+|+..+...| +.+.|...+... .| .+.....|+.++..- +.++.....|......+.
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v------g~d~~s~~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF------ENYWDSYGLYKEYIEEEGKIED 100 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS------TTCTTCHHHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc------CCCcccHHHHHHHHHHHHhchh
Confidence 678889999999999888 566665423333 33 345566777777542 112566677777665543
Q ss_pred HhccHHHHHHHHHHHHhcC
Q 015907 170 EKNVLQTRLKKYEETLSIS 188 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~ 188 (398)
..++.+.+...|++++...
T Consensus 101 ~~~~~~~vR~iy~rAL~~P 119 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQTP 119 (493)
T ss_dssp HHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHHHHHHHhCh
Confidence 4678899999999999853
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=2.6e-09 Score=82.30 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=99.4
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHH
Q 015907 171 KNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSA 246 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 246 (398)
.+++++|+.+|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 46899999999999998744 344 999999999999999999999987 678999999999999 89999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLTNALLA----AKKPDEAVQFLLASRE 289 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~ 289 (398)
.+|+++.+. . ++.+++++|.+|.. .+++++|+.+|+++.+
T Consensus 82 ~~~~~Aa~~--g-~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGL--N-DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHT--T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--C-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 999999987 3 79999999999999 9999999999999865
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.09 E-value=4.7e-09 Score=80.83 Aligned_cols=118 Identities=11% Similarity=0.080 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cC
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAE----LG 206 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g 206 (398)
+++|+.+|.++.... ..... +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+
T Consensus 11 ~~~A~~~~~~aa~~g---------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 11 LKKAIQYYVKACELN---------EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHTT---------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHHHcCC---------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc
Confidence 889999999998766 33333 899998888999999999999986 689999999999999 89
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 207 DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE----LKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 207 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+...++
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~l~ 136 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG---SEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHC-
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHh
Confidence 999999999999987 678999999999999 899999999999999875 556665554
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.07 E-value=5.6e-10 Score=104.41 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=107.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---H
Q 015907 164 KELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---D 227 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~ 227 (398)
.+..+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 444566789999999999999975 4555 457899999999999999999999999975 45554 5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCCHH---HHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 228 VFRLLGEVKYELKDYEGSAAAYRVSTMV-----SKDINFE---VLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 228 ~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
.+.+||.+|..+|++++|+.+|++++.+ .|+ ++. ....++.++..++.+++|...|.++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999975 566 554 56789999999999999999999997755
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.05 E-value=7.6e-10 Score=79.81 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHc
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAA 274 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~ 274 (398)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|+ +..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 56889999999999999999999999999999 9999999999999999999999999999999 8877743
Q ss_pred CCchHHHHHHHHHHHHhc
Q 015907 275 KKPDEAVQFLLASRERLS 292 (398)
Q Consensus 275 ~~~~~A~~~~~~a~~~~~ 292 (398)
+.+.+++..|+++....+
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 445667777766544433
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.01 E-value=1.2e-09 Score=102.10 Aligned_cols=132 Identities=11% Similarity=-0.028 Sum_probs=105.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhh-----CCCCCH---HHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMV-----SKDINF---EVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
.+..+..+|+|++|+..+++++++ .|+ ++ .++.+||.+|..+|+|++|+.++++++.+....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------- 384 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADT-NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL--------- 384 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---------
Confidence 344566789999999999999976 344 44 468899999999999999999999998765422
Q ss_pred cccccccccccccC-CCc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CCCC---hHHHHHHHHHHHHcCCHHH
Q 015907 304 GRSGDKKETEPQKV-DPI--QVELLLGKAYSDGGRVSDAVAVYDRLISS-----YPND---FRGYLAKGIILKENGKVGD 372 (398)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~ 372 (398)
+.. +|. ..+.++|.+|..+|++++|+.+|++++++ .|+. .+...+++.++..++.+++
T Consensus 385 -----------lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 385 -----------YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp -----------SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222 24455999999999999999999999974 3444 5677899999999999999
Q ss_pred HHHHHHHHHhhC
Q 015907 373 AERMFIQARFFA 384 (398)
Q Consensus 373 A~~~~~~al~~~ 384 (398)
|...|.++.+..
T Consensus 454 ae~~~~~~~~~~ 465 (490)
T 3n71_A 454 NEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=2.9e-08 Score=87.76 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=62.5
Q ss_pred cCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Q 015907 316 KVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVK 389 (398)
Q Consensus 316 ~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 389 (398)
..+|.++..+ ++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|.+|+.++|..+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3445555554 777777789999999999999999974 778899999999999999999999999999998753
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.90 E-value=4.3e-08 Score=86.65 Aligned_cols=138 Identities=15% Similarity=0.013 Sum_probs=108.0
Q ss_pred hhcCCCchhhhhh---hcchh-h---c-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccH--------
Q 015907 111 DYDAPIETEKKTI---GLGTK-I---G-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVL-------- 174 (398)
Q Consensus 111 ~~~~p~~~~~~~~---~lg~~-~---g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~-------- 174 (398)
....|.+++++.. |.+.+ . . ...|+.+|+++++++ |+.+.++-.++.++.....+
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---------P~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---------PEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 3445666666543 22222 2 2 789999999999999 99999999888888643211
Q ss_pred HHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 175 QTRLKKYEE--TLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 175 ~~A~~~~~~--~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
......++. ++..+|.++.++..++..+...|++++|+..+++++.++|. ..+|..+|.++...|++++|++.|++|
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111112222 33567999999999999999999999999999999999975 678889999999999999999999999
Q ss_pred HhhCCC
Q 015907 253 TMVSKD 258 (398)
Q Consensus 253 l~~~p~ 258 (398)
+.++|.
T Consensus 337 lrL~P~ 342 (372)
T 3ly7_A 337 FNLRPG 342 (372)
T ss_dssp HHHSCS
T ss_pred HhcCCC
Confidence 999997
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=2e-08 Score=71.16 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 188 SPKDSTALEGAAVTLAELGD---YTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 188 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+|+++.++..+|.+++..++ .++|..+++++++.+|+++.++..+|..++..|+|++|+.+|++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666655544 566666666666666666666666666666666666666666666666665
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.84 E-value=1e-07 Score=80.79 Aligned_cols=175 Identities=15% Similarity=0.112 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 015907 175 QTRLKKYEETLSISPKDSTALEGAAVTL-------AEL--------------GDYTRAVSLLQDLAKEKPSDPDVFRLLG 233 (398)
Q Consensus 175 ~~A~~~~~~~l~~~p~~~~~~~~la~~~-------~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la 233 (398)
.-.+..++-.+..+|++...+...|..| .+. .++..|..+|.++.+. ++ .+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y------~~--ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY------AL--SS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH------HH--HH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH------HH--HH
Confidence 3446778888889999976554444433 222 1244556666655432 11 11
Q ss_pred HHHHHccCHHHHHH-----HHHHHH-hhCCCCCHHHHHHHHHHHHH-----cCCc------hHHHHHHHHHHHHhcCCCC
Q 015907 234 EVKYELKDYEGSAA-----AYRVST-MVSKDINFEVLRGLTNALLA-----AKKP------DEAVQFLLASRERLSTGKS 296 (398)
Q Consensus 234 ~~~~~~g~~~~A~~-----~~~~al-~~~p~~~~~~~~~la~~~~~-----~~~~------~~A~~~~~~a~~~~~~~~~ 296 (398)
+......+.+++. -+..++ +.+|+ ++++++..|.+... .|.+ .+|...++++++
T Consensus 121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle------- 191 (301)
T 3u64_A 121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRV-DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD------- 191 (301)
T ss_dssp -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGG-GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-------
T ss_pred -HHHhCccHHHHHHhcchhhHHHHHHHcCcc-ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-------
Confidence 1111122332222 223333 34677 88888877777643 2332 466677777644
Q ss_pred CchhhhccccccccccccccCCCc--h--HHHHHHHHHHhC-----CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Q 015907 297 DDLSVKDGRSGDKKETEPQKVDPI--Q--VELLLGKAYSDG-----GRVSDAVAVYDRLISSYPND-FRGYLAKGIILKE 366 (398)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 366 (398)
++|. + ++..+|.+|... |+.++|..+|+++++++|+. ...++.+|..+..
T Consensus 192 --------------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 192 --------------------LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp --------------------HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred --------------------hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 5565 3 667799999995 99999999999999999975 9999999999988
Q ss_pred -cCCHHHHHHHHHHHHhhCCC
Q 015907 367 -NGKVGDAERMFIQARFFAPE 386 (398)
Q Consensus 367 -~g~~~~A~~~~~~al~~~p~ 386 (398)
.|++++|..++++++..+|.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGG
T ss_pred hcCCHHHHHHHHHHHHcCCCC
Confidence 59999999999999998877
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=4.2e-08 Score=75.06 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHH
Q 015907 172 NVLQTRLKKYEETLSISPKDSTALEGAAVTLAELG---DYTRAVSLLQDLAKEK-P-SDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 172 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
+....+...|.+.+..+|.+.++.+.+|.++.+.+ +.++++.+++.+++.+ | ...++++.+|..+.++|+|++|.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566778888888889999999999999999988 7779999999999998 7 56889999999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHH
Q 015907 247 AAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 247 ~~~~~al~~~p~~~~~~~~~la 268 (398)
++++++++++|+ +..+....-
T Consensus 92 ~y~~~lL~ieP~-n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHH
Confidence 999999999999 777655443
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.82 E-value=3.2e-07 Score=77.80 Aligned_cols=104 Identities=15% Similarity=0.050 Sum_probs=88.5
Q ss_pred hcCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAE---L--G------DYTRAVSLLQDLAKEKPS--DPDVFRLLGEVKYEL-----KDYEGSAA 247 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 247 (398)
..+|+++++++..|.+... . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4567888877777766533 1 3 346899999999999999 567999999999995 99999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHHHH
Q 015907 248 AYRVSTMVSKDINFEVLRGLTNALLA-AKKPDEAVQFLLASRE 289 (398)
Q Consensus 248 ~~~~al~~~p~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~ 289 (398)
+|+++++++|+.+..+++.+|..+.. .|++++|..++++++.
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 99999999997349999999999988 5999999999999977
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.82 E-value=2.9e-08 Score=70.29 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 015907 154 SPTEEAGVVNKELSEEEKNV---LQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP 226 (398)
Q Consensus 154 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 226 (398)
.|.++..+..+|.+++..++ .++|...|+++++.+|+++.++..+|..++..|+|++|+.+|+++++.+|..+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 38889999999999987766 79999999999999999999999999999999999999999999999999843
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.80 E-value=1.9e-06 Score=81.07 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCCHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSIS-PKDSTALEGAAVTLAELGD---------YTRAVSLLQDLAKEK-PSDPDV 228 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~ 228 (398)
.+..+-..+.+.|++++|+..|+++.+.. +.+...|..+-.++...+. .++|.++|+++.... +-+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555677788999999999999988753 2356667777666655443 688999999888753 225678
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccc
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGD 308 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 308 (398)
|..+...|...|++++|..+|+++....-..+...|..+...|...|+.++|..+|+++..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~------------------- 168 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE------------------- 168 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-------------------
Confidence 8899999999999999999999988764333688999999999999999999999988866
Q ss_pred ccccccccCCCchHHHH-HHHHHHhCCChHHHHHHHHHHHHh
Q 015907 309 KKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
....|+...+. +...|.+.|+.++|..++++.-+.
T Consensus 169 ------~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 ------SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ------TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 35667655444 889999999999999999988763
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.77 E-value=1.5e-06 Score=81.84 Aligned_cols=165 Identities=11% Similarity=0.041 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhhCCCCCHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRLLGEVKYELK---------DYEGSAAAYRVSTMVSKDINFEV 263 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~ 263 (398)
.+..+-..+.+.|+.++|+.+|+++.+.. +-+..+|..+-.++...+ ..++|.+.|+++....-..+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45566678889999999999999998853 224667777766665543 47899999999887654336889
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH-HHHHHHhCCChHHHHHH
Q 015907 264 LRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL-LGKAYSDGGRVSDAVAV 342 (398)
Q Consensus 264 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~ 342 (398)
|..+...|...|++++|..+|+++.. ....|+...++ +-..|.+.|+.++|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~-------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKA-------------------------FGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-------------------------TTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------cCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999998865 34566654444 88899999999999999
Q ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015907 343 YDRLISSY-PNDFRGYLAKGIILKENGKVGDAERMFIQARFF 383 (398)
Q Consensus 343 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 383 (398)
|++..+.. .-+...|..+..+|.+.|+.++|.+++++..+.
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99998743 225678999999999999999999999998764
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.76 E-value=2.2e-06 Score=80.64 Aligned_cols=202 Identities=8% Similarity=-0.129 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 015907 133 VAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAV 212 (398)
Q Consensus 133 ~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 212 (398)
.....|++++... |..+..|+..+..+...|+.+.|...|++++.. |.+...|...+... ..+ +.
T Consensus 197 Rv~~~ye~al~~~---------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~- 261 (493)
T 2uy1_A 197 RMHFIHNYILDSF---------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV- 261 (493)
T ss_dssp HHHHHHHHHHHHT---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH-
T ss_pred HHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH-
Confidence 4567888888877 888889999998888889999999999999999 88877766554431 111 11
Q ss_pred HHHHHHHHh---C----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcC-Cch
Q 015907 213 SLLQDLAKE---K----------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAK-KPD 278 (398)
Q Consensus 213 ~~~~~al~~---~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~-~~~ 278 (398)
++++... . +....+|...+......++.+.|...|+++ . .|.....+|...+.+....+ +++
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChH
Confidence 2222211 0 112356777777777788899999999999 4 33325677777776666555 699
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHH
Q 015907 279 EAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYL 358 (398)
Q Consensus 279 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 358 (398)
.|...|+.+++..+.. .+.+...+......|+.+.|..+|+++ +.....|.
T Consensus 338 ~ar~ife~al~~~~~~-------------------------~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~ 388 (493)
T 2uy1_A 338 TPYNIFSSGLLKHPDS-------------------------TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWD 388 (493)
T ss_dssp HHHHHHHHHHHHCTTC-------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHH
T ss_pred HHHHHHHHHHHHCCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHH
Confidence 9999999887743211 233444667777889999999999887 34677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 359 AKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 359 ~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
.....-...|+.+.+...+++++.
T Consensus 389 ~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 389 SMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888999999888888875
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1e-07 Score=72.91 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHc
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKN---VLQTRLKKYEETLSIS-P-KDSTALEGAAVTLAEL 205 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~ 205 (398)
...+...|...+..+ +.+..+.+.+|+++...+ +.++++..|+.+++.+ | +..++++.+|..++++
T Consensus 14 l~~~~~~y~~e~~~~---------~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG---------SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHTT---------CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccC---------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence 455677778777766 788899999999999977 7889999999999998 7 5689999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|+|++|..+++++++++|++..+....-.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999887665443
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.69 E-value=2.9e-07 Score=66.84 Aligned_cols=75 Identities=9% Similarity=0.039 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEK-------PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLR 265 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 265 (398)
.-++.+|..++..|+|..|+.+|+.+++.. +....++..+|.++..+|+++.|+.++++++.+.|+ +..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHh
Confidence 344555555555555555555555555532 123455556666666666666666666666666665 555554
Q ss_pred HHH
Q 015907 266 GLT 268 (398)
Q Consensus 266 ~la 268 (398)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 444
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.65 E-value=3.1e-07 Score=66.63 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSIS-------PKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVF 229 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 229 (398)
.+...+.+|..++..|+|..|+.+|+.+++.. +..+.++..+|.++..+|+++.|+.++++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567899999999999999999999999863 34578999999999999999999999999999999999988
Q ss_pred HHHH
Q 015907 230 RLLG 233 (398)
Q Consensus 230 ~~la 233 (398)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.61 E-value=2.4e-07 Score=85.15 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=51.2
Q ss_pred hccHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHH
Q 015907 171 KNVLQTRLKKYEETLSI-----SPKDS---TALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---DVFRLLGE 234 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~ 234 (398)
.|+|++|+..|++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ .|+++ ..+.+||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34566666666666653 34443 34566666666666666666666666653 23333 34666666
Q ss_pred HHHHccCHHHHHHHHHHHHhh
Q 015907 235 VKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~ 255 (398)
+|..+|++++|+.+|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 666666666666666666654
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.56 E-value=2.4e-07 Score=85.35 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=77.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAAVTLAELGDYTRAVSLLQDLAKE-----KPSDP---DV 228 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 228 (398)
...+...|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888888865 3444 346788888888888998888888888864 34444 46
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCCHHH---HHHHHHHH
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMV-----SKDINFEV---LRGLTNAL 271 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~~la~~~ 271 (398)
+++||.+|..+|++++|+.+|++++++ .|+ ++.+ +.+|+.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE-HSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHH
Confidence 788888888888888888888888865 555 5543 34444444
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.52 E-value=5.7e-07 Score=82.68 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=79.0
Q ss_pred HcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCC-Cc--hHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 015907 273 AAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVD-PI--QVELLLGKAYSDGGRVSDAVAVYDRLISS 349 (398)
Q Consensus 273 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 349 (398)
..|+|++|+..+++++.+.... +..+ |. ..+.++|.+|..+|+|++|+.++++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~--------------------lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSV--------------------FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTT--------------------BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCc--------------------cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 4688999999999998866533 2222 22 23445999999999999999999999974
Q ss_pred --------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChHHH
Q 015907 350 --------YPNDFRGYLAKGIILKENGKVGDAERMFIQARFF-----APEKVKAL 391 (398)
Q Consensus 350 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 391 (398)
+|+....+.+||.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444568999999999999999999999999975 57776653
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=1.5e-06 Score=80.04 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=85.8
Q ss_pred hc-HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CCCC---HHHHHHHH
Q 015907 129 IG-VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQTRLKKYEETLSI-----SPKD---STALEGAA 199 (398)
Q Consensus 129 ~g-~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la 199 (398)
.| +++|+..+++++.+... .-+..+|....++.++|.+|..+|+|++|+.++++++.. .|++ ...++++|
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~-~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSE-RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSC-CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccC-cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 67 89999999999976421 123334666788999999999999999999999999975 3555 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKE-----KPSDPDV---FRLLGEVKYE 238 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 238 (398)
.+|..+|++++|+.+|++++++ .|+++.+ +.+|+.+...
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 5676654 4555555544
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.25 E-value=1.5e-05 Score=58.65 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=82.3
Q ss_pred HhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHH
Q 015907 170 EKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTR---AVSLLQDLAKEK-P-SDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~ 244 (398)
.......+...|.+.+..++....+.+.+|.++....+... ++.+++..+..+ | ..-+.++.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456667778888888788889999999999999888777 999999988876 4 456789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la 268 (398)
|..+++.+++..|+ +..+.....
T Consensus 93 A~~~~~~lL~~eP~-n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ-NNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999999 877665443
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.23 E-value=2.2e-05 Score=59.00 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=89.1
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--H
Q 015907 255 VSKDINFEVLRGLTNALLAAKKP------DEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--L 326 (398)
Q Consensus 255 ~~p~~~~~~~~~la~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l 326 (398)
+.|. +++.|..........|++ ++-++.|+++....+.... ......++.| .
T Consensus 8 ~~p~-~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-------------------~~wrrYI~LWIrY 67 (161)
T 4h7y_A 8 MMAN-NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-------------------GQNESFARIQVRF 67 (161)
T ss_dssp --CC-SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-------------------TTCHHHHHHHHHH
T ss_pred eCCC-CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-------------------ccHHHHHHHHHHH
Confidence 4577 788888888887777887 7777888877765553300 1111223333 5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
|.. ...++.++|...|+.++.++...+.+|...|..-.++|+...|...+.+++.+.|...+.+..
T Consensus 68 A~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 68 AEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 544 555999999999999999988899999999999999999999999999999999987665543
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.17 E-value=2e-05 Score=58.02 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHHHhccHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHc
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEEEKNVLQT---RLKKYEETLSIS-P-KDSTALEGAAVTLAEL 205 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~ 205 (398)
+..+...|......+ +....+.+.+|+++....+... ++..++..+..+ | ..-++++.+|..++++
T Consensus 17 l~~~~~~y~~e~~~~---------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG---------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHS---------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccC---------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 344555666666555 6777888999999988765555 999999999987 5 4568999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
|+|++|..+++.+++..|++..+......
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999887665443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.07 E-value=3e-05 Score=59.63 Aligned_cols=112 Identities=17% Similarity=0.042 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Q 015907 158 EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKD---------STALEGAAVTLAELGDYTRAVSLLQDLAKEK---PSD 225 (398)
Q Consensus 158 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 225 (398)
..+++.....+...|.|+.|+.....++....++ ..++..+|.+++..++|..|...|+++++.. +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566777788889999999999888876654322 2478999999999999999999999987642 111
Q ss_pred ----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 226 ----------------------PDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 226 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.++.+.++.||.+++++++|+..++.+-.... .+.+...||.+|
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R--t~kvnm~LakLy 165 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR--TPKINMLLANLY 165 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC--CHHHHHHHHHHC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc--CHHHHHHHHHHh
Confidence 25667777777777777777777765433322 355666666554
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.03 E-value=0.00015 Score=54.54 Aligned_cols=106 Identities=11% Similarity=0.050 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHHhccH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVL------QTRLKKYEETLSISPKD--------STALEGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
|.+++.|..........|+. ++-+..|++++..-|.. ...|...|.. ...++.++|.+.|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 88888888888888888888 88888999988876653 2355566644 566899999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH
Q 015907 221 EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE 262 (398)
Q Consensus 221 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 262 (398)
+....+.+|...|..-..+|+...|.+.+.+++.+.|. ..+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~ 129 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLE 129 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHH
Confidence 87777888888888888899999999999999998887 443
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.68 E-value=0.0003 Score=54.16 Aligned_cols=133 Identities=13% Similarity=0.070 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCc-h
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVS---KDI-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDD-L 299 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 299 (398)
++.-...+...|.|+.|+-....++.+. |+. ...++..+|.+++..++|..|...|+++++....-+... .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4444555566667777766666655442 220 123566777777777777777777777655433211100 0
Q ss_pred hhhccccccccccccccC-CCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015907 300 SVKDGRSGDKKETEPQKV-DPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIIL 364 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 364 (398)
....+. .......... ...++.+.++.||..++++++|+..++..-. ....+.+...||.+|
T Consensus 103 ~~~~~~--~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTGN--SASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccc--cCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 000000 0000000001 1124555678888888888888777654321 223466666666654
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.62 E-value=0.00047 Score=50.83 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLL 232 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 232 (398)
.+.+.++.|+++.... +..+++..++..+..+|. .-+.++.+|..++++|+|++|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455666666666543 445677777777776663 356777777777777777777777777777777776655443
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.51 E-value=0.0011 Score=49.49 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 015907 157 EEAGVVNKELSEEEKN---VLQTRLKKYEETLSISPK-DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFR 230 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 230 (398)
...+.++.++++.... +..+++..++..+...|. .-++++.+|..++++|+|.+|..+.+.+++..|++..+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445555666655543 344566666666666653 3456666666666666666666666666666666655443
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.48 E-value=0.0026 Score=46.93 Aligned_cols=89 Identities=17% Similarity=0.038 Sum_probs=71.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 178 LKKYEETLSISPKDSTALEGAAVTLAELGDY---TRAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 178 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
..-|++-+ ...-.+.+.+.+|.++.+..+. .+++.+++..++.+|. .-+.++.+|..+.++|+|++|..+.+.++
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444422 2334678999999999988765 4799999999998884 47899999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHH
Q 015907 254 MVSKDINFEVLRGLT 268 (398)
Q Consensus 254 ~~~p~~~~~~~~~la 268 (398)
+..|+ +..+.....
T Consensus 106 ~~eP~-N~QA~~Lk~ 119 (134)
T 3o48_A 106 EHERN-NKQVGALKS 119 (134)
T ss_dssp TTCTT-CHHHHHHHH
T ss_pred hhCCC-CHHHHHHHH
Confidence 99999 877655443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.46 E-value=0.0038 Score=46.62 Aligned_cols=78 Identities=19% Similarity=0.085 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH
Q 015907 189 PKDSTALEGAAVTLAELGDYT---RAVSLLQDLAKEKPS-DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL 264 (398)
Q Consensus 189 p~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 264 (398)
...+.+.+.+|.++....+.. +++.+++..+...|. .-+.++.+|..+.++|+|++|..+.+.+++..|+ +..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~-n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN-NKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC-CHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHH
Confidence 557889999999999987654 799999999998884 4678999999999999999999999999999999 77665
Q ss_pred HHH
Q 015907 265 RGL 267 (398)
Q Consensus 265 ~~l 267 (398)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.05 E-value=0.067 Score=41.06 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--C--------
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAK--E--K-------- 222 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~-------- 222 (398)
|..++--..++..++-.|++.+++-.+.. -+...+.+..+.||...++|..|+..++..++ . +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 34445556677888888888888777653 24567777788888888888888888888883 2 2
Q ss_pred -----CCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 223 -----PSDPD-VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 223 -----p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
|.+.+ .+..+|.++...|+.++|+.+|.......|-
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 22222 3556777778888888888888887777765
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.94 E-value=0.018 Score=51.69 Aligned_cols=100 Identities=18% Similarity=0.046 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYD 344 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 344 (398)
..+|.+|...|+|.+|...+.+..+.+....+ ...--+++.....+|...+++.++...|.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-------------------~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD-------------------KNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-------------------THHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-------------------chhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 37899999999999999999888775542200 00011455558888999999999999998
Q ss_pred HHHHhC---CCC----hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 015907 345 RLISSY---PND----FRGYLAKGIILK-ENGKVGDAERMFIQARFF 383 (398)
Q Consensus 345 ~al~~~---p~~----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 383 (398)
++.... +.+ +.....-|..+. ..++|.+|...|-.++.-
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 886532 122 335566777888 899999999999888754
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.084 Score=52.56 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=24.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
...|++++|.+..+. .++...|..+|..+...++++.|+.+|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555555554321 234556666666666666666666666554
No 236
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.79 E-value=0.048 Score=41.84 Aligned_cols=77 Identities=8% Similarity=-0.060 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHHhCCChHHHHHHHHHHHH-----------------hCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 319 PIQVELLLGKAYSDGGRVSDAVAVYDRLIS-----------------SYPNDFR-GYLAKGIILKENGKVGDAERMFIQA 380 (398)
Q Consensus 319 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 380 (398)
.....+.-+.||...++|..|+..++..++ .+|.+-+ .+..+|.++.+.|+.++|+.+|...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 334444566666666666666666666662 1233332 4556777778888888888888777
Q ss_pred HhhCCCChHHHHHhh
Q 015907 381 RFFAPEKVKALVDQY 395 (398)
Q Consensus 381 l~~~p~~~~~~~~l~ 395 (398)
....|=.+.+-+-+|
T Consensus 141 f~~~~lf~~vEnliy 155 (242)
T 3kae_A 141 FGKSFLFSPVENLLL 155 (242)
T ss_dssp HHHCCCHHHHHHHHH
T ss_pred cCCccccchHHHHHh
Confidence 777766555544443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.012 Score=57.44 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=85.3
Q ss_pred hcc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 015907 171 KNV-LQTRLKKYEETLSISPKDSTALEGAAVTLAE--L-GDYTRAVSLLQDLAKE--------KPSD----------PDV 228 (398)
Q Consensus 171 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 228 (398)
.++ ++.|+..+++....+|.... ++..+.+... . .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 68899999999998886543 2233332221 2 2344677777776642 2222 234
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 015907 229 FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLAS 287 (398)
Q Consensus 229 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 287 (398)
+...+..+...|+++-|+.+.++++...|. ....|..|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 555677778899999999999999999999 9999999999999999999999887666
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.018 Score=56.25 Aligned_cols=112 Identities=16% Similarity=0.160 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCChHHHHHHHHHHHH---HhccHHHHHHHHHHHHh--------cCCCC--------
Q 015907 131 VGVAVVIFGLVFALGDFLPSGSVSPTEEAGVVNKELSEE---EKNVLQTRLKKYEETLS--------ISPKD-------- 191 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~~~~~~~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~--------~~p~~-------- 191 (398)
.+.|+.+|++..... |.... ++..+.+.. ...+--+|+..+.+.++ ..+.+
T Consensus 265 ~~~a~~~le~L~~~~---------p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 265 VDFTIDYLKGLTKKD---------PIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHHHHHHHHHHC---------GGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC---------CchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 578999999988776 65433 222222221 12334456666666653 22333
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 015907 192 --STALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVS 252 (398)
Q Consensus 192 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 252 (398)
...+..-+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+|+.|+-.+..+
T Consensus 335 ~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 335 CMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2355666778888999999999999999999999999999999999999999999887765
No 239
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.67 E-value=0.04 Score=55.14 Aligned_cols=102 Identities=6% Similarity=-0.100 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 015907 157 EEAGVVNKELSEEEKNVLQTRLKKYEETLSI----SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK-PSDPDVFRL 231 (398)
Q Consensus 157 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 231 (398)
....+..+...+.+.|+.++|...|..+.+. -..+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456777778888888888888888665432 23456788888888888888888888888887643 224667777
Q ss_pred HHHHHHHccC-HHHHHHHHHHHHhhCCC
Q 015907 232 LGEVKYELKD-YEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 232 la~~~~~~g~-~~~A~~~~~~al~~~p~ 258 (398)
+..++.+.|+ .++|.++|+++....-.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 7777777776 46778888888776543
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.56 E-value=0.13 Score=46.47 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRA-VSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
......|+.+.|...+.+++.+....+-. ... ...|-.+ ...++.. ...+...++..+...|++.+
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHH
Confidence 33344578888888888888875432110 000 0111111 1111111 12345567888889999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcC
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLST 293 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 293 (398)
++..+..++..+|- +-.++..+..++...|+..+|+..|+++.+.+..
T Consensus 190 a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 190 VIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 8999999999999999999999999998776543
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.16 Score=50.53 Aligned_cols=172 Identities=13% Similarity=0.039 Sum_probs=101.8
Q ss_pred HHHHHhccHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 015907 166 LSEEEKNVLQTRLK-KYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEG 244 (398)
Q Consensus 166 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 244 (398)
......+++++|.. .+. .-| +...+..++..+...|.+++|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456788888866 441 111 02233667778888999999887653 23222 234567899999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHH
Q 015907 245 SAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVEL 324 (398)
Q Consensus 245 A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
|.+..+. .+ +...|..+|..+...++++.|+.+|.++...... ..+. ......+...
T Consensus 671 A~~~~~~-----~~-~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l---------------~~l~--~~~~~~~~~~ 727 (814)
T 3mkq_A 671 ARDLLTD-----ES-AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESL---------------FLLH--SSFNNKEGLV 727 (814)
T ss_dssp HHHHHTT-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH---------------HHHH--HHTTCHHHHH
T ss_pred HHHHHHh-----hC-cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhh---------------HHHH--HHcCCHHHHH
Confidence 9988643 24 7899999999999999999999999876211000 0000 0001112223
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.++......|++..|..+|.+. .+ ......+|.+.+++++|+.+-++ ..|..
T Consensus 728 ~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~ 779 (814)
T 3mkq_A 728 TLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGD 779 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCH
T ss_pred HHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCCh
Confidence 3566666666666666655442 11 12344456666777766665432 44544
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.49 E-value=0.11 Score=46.51 Aligned_cols=190 Identities=12% Similarity=0.024 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-----
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTA-----LEGAAVTLAE-LGDYTRAVSLLQDLAKEKPSDPD----- 227 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~----- 227 (398)
.+.+.+|..|...|++++-..++......-+.-+.+ ...+-..+.. .+..+.-++++..+++.....-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999888888765544333222 2222222222 34555556666666653222211
Q ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhh
Q 015907 228 -VFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-----INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSV 301 (398)
Q Consensus 228 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 301 (398)
.-..+|..|...|+|.+|...+.+....-.. .-.+++.....+|...+++.++...+.++......
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-------- 171 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-------- 171 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--------
Confidence 2237899999999999999999988764211 13456777888999999999999999998775431
Q ss_pred hccccccccccccccCCCc---hHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHcCC
Q 015907 302 KDGRSGDKKETEPQKVDPI---QVELLLGKAYS-DGGRVSDAVAVYDRLISSYPND-----FRGYLAKGIILKENGK 369 (398)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~ 369 (398)
+..+|. .....-|..+. ..++|.+|...|-++++..... ..+...++.+-...++
T Consensus 172 -------------i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 172 -------------IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp -------------SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 112222 22333788888 8999999999999887543222 1233444555555554
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.33 E-value=0.085 Score=47.59 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
.+...++..+...|++.+|+..+..++..+|-+..+|..+..++...|+..+|+..|+++-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667888899999999999999999999999999999999999999999999999988754
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.14 Score=40.08 Aligned_cols=109 Identities=12% Similarity=0.020 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 156 TEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 156 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
.++...+.+ ..+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- +.. .+..+
T Consensus 6 ~D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~---~L~~L 69 (177)
T 3mkq_B 6 QDPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----SFD---KLSFL 69 (177)
T ss_dssp SCHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CHH---HHHHH
T ss_pred CChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----CHH---HHHHH
Confidence 344444444 35789999999887765 678899999999999999999999998862 222 33445
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 236 KYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 236 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
|...|+.+.-...-+.+...+.. .....+++..|+++++++.|.+
T Consensus 70 y~~tg~~e~L~kla~iA~~~g~~------n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTREDF------GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCH------HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHCccH------HHHHHHHHHcCCHHHHHHHHHH
Confidence 55667766655554444333211 2233445667777777777744
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.10 E-value=0.5 Score=45.26 Aligned_cols=208 Identities=11% Similarity=-0.048 Sum_probs=128.1
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDST----ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..+.......+.+.|...+.......+-+.. .+..++.-+...+...++...+.+.....+++.. ...++.....
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr 297 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALG 297 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHH
Confidence 3445555566888999999877654333332 2223333334445356777777776654443333 3333334456
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCC--Cch-hhhccccccccccccc
Q 015907 239 LKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKS--DDL-SVKDGRSGDKKETEPQ 315 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 315 (398)
.|++..|...|.++-..... .....+.+|.++...|+.++|..+|.++... .. +.+ ...+|........ ..
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~~fYg~lAa~~Lg~~~~~~~~-~~ 371 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQ----RGFYPMVAAQRIGEEYELKID-KA 371 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CSHHHHHHHHHTTCCCCCCCC-CC
T ss_pred CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CChHHHHHHHHcCCCCCCCCC-CC
Confidence 79999999999877554444 6788999999999999999999999776431 11 000 0111111000000 01
Q ss_pred cCC-----CchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 316 KVD-----PIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 316 ~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
... +.......+..+...|....|...+..++.. .+..-...++.+....|.+..++....+
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 010 1123344777889999999999998887763 2345566788888899999888766543
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.02 E-value=0.11 Score=43.56 Aligned_cols=122 Identities=20% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 015907 167 SEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSA 246 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 246 (398)
.....|++++|+......++.+|.+......+..+++-.|+|+.|..-++.+.+++|.....-..+-. .-.|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~-------lI~aE 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH-------LVKAA 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH-------HHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH-------HHHHH
Confidence 35577999999999999999999999999999999999999999999999999999986443222111 11122
Q ss_pred HHHHHHHhh--CC---CCCHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCC
Q 015907 247 AAYRVSTMV--SK---DINFE--VLRGLTNALLAAKKPDEAVQFLLASRERLSTGK 295 (398)
Q Consensus 247 ~~~~~al~~--~p---~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 295 (398)
..=.+++.- .| ..... ....-+......|+.++|..+-.++....+..+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 222222221 11 10122 223345555678999999999999988766554
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.99 E-value=0.084 Score=52.94 Aligned_cols=97 Identities=7% Similarity=-0.108 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKE----KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLT 268 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la 268 (398)
..+..+...|.+.|+.++|..+|..+.+. -.-+...|..+...|.+.|+.++|.++|+++....-..+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46888899999999999999999776432 23357889999999999999999999999998876444688999999
Q ss_pred HHHHHcCCc-hHHHHHHHHHHH
Q 015907 269 NALLAAKKP-DEAVQFLLASRE 289 (398)
Q Consensus 269 ~~~~~~~~~-~~A~~~~~~a~~ 289 (398)
..+.+.|+. ++|..+|+++..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHH
Confidence 999999985 688899988866
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.43 Score=37.29 Aligned_cols=110 Identities=11% Similarity=0.058 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015907 190 KDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTN 269 (398)
Q Consensus 190 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~ 269 (398)
.+++..+.++ ...|+++.|.+..+.+ ++...|..+|......|+++-|+.+|.++- +.. .+..
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~---~L~~ 68 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH------SFD---KLSF 68 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHH---HHHH
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHH---HHHH
Confidence 3455555554 5679999999987765 568899999999999999999999998762 222 3445
Q ss_pred HHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhCCChHHHHHHHHHH
Q 015907 270 ALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 270 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 346 (398)
+|.-.|+.+.-...-+.+.. ..-+.....++..+|+++++++.|.+.
T Consensus 69 Ly~~tg~~e~L~kla~iA~~------------------------------~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQT------------------------------REDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHH------------------------------TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHH------------------------------CccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 56667776554444333311 011122445667789999999988653
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.74 E-value=0.078 Score=49.28 Aligned_cols=77 Identities=18% Similarity=0.039 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNAL 271 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~ 271 (398)
.+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++..... .+.+..++..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P-f~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC-ChhHHHHHHHHH
Confidence 34445555555555555666666666666665556666665555555555555555555554433 455555554444
No 250
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.39 E-value=0.099 Score=48.57 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
.+..+|........+..|..+|.++..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5567888888888899999999999999999999999999999999999999999999998766678888888776654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.31 E-value=0.59 Score=48.62 Aligned_cols=117 Identities=12% Similarity=-0.010 Sum_probs=86.5
Q ss_pred HHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------
Q 015907 166 LSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEK----------------------- 222 (398)
Q Consensus 166 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------- 222 (398)
..+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++..--
T Consensus 820 ~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34445555554433 334567788888999999999999999999998873210
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHH----HHHHHHHHHHHcCCchHHHHHHHH
Q 015907 223 PSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFE----VLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 223 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
...+..|..+..++...+.++.+++..+.|++..+..+.. .|..+-..+...|+|++|...+..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 1123456777788889999999999999999876542432 577788888999999999888744
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.31 E-value=2.1 Score=40.94 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=46.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015907 325 LLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARF 382 (398)
Q Consensus 325 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 382 (398)
+++......|+++.|..+|..+-..........+.+|..+..+|+.++|..+|+++..
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444455679999999999876553345677889999999999999999999999875
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.18 E-value=0.98 Score=37.81 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 201 TLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 201 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+.+.|+.++|++.+...++..|.+......+..++.-.|+++.|...++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4567899999999999999999999999999999999999999999999999999998
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=2.4 Score=38.88 Aligned_cols=188 Identities=14% Similarity=0.010 Sum_probs=116.6
Q ss_pred hccHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-Hcc
Q 015907 171 KNVLQTRLKKYEETLSI------SPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVK---Y-ELK 240 (398)
Q Consensus 171 ~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~-~~g 240 (398)
.|+++.|++.+....+. .+....+...+..++...|+|+...+++.-..+.......+-..+.... . ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37788888776443322 2334667888888999999999888877665554433333222222111 1 112
Q ss_pred CHHHHHHHHHHHHhhC----CC-C-----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccc
Q 015907 241 DYEGSAAAYRVSTMVS----KD-I-----NFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKK 310 (398)
Q Consensus 241 ~~~~A~~~~~~al~~~----p~-~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 310 (398)
..+. ......+..- .. . .......|+.++...|++.+|...+.....-..
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~------------------ 168 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY------------------ 168 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------------------
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH------------------
Confidence 2111 1111222211 10 0 123457789999999999999999877643221
Q ss_pred ccccccCCC----chHHHHHHHHHHhCCChHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015907 311 ETEPQKVDP----IQVELLLGKAYSDGGRVSDAVAVYDRLIS---SYPND----FRGYLAKGIILKENGKVGDAERMFIQ 379 (398)
Q Consensus 311 ~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 379 (398)
...+ .+.+.....+|...+++.+|...+.++.. ..+.. ...+...|.++...++|.+|..+|..
T Consensus 169 -----~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 169 -----GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp -----SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -----hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111 13555588889999999999999988642 23333 24567788888999999999999988
Q ss_pred HHhh
Q 015907 380 ARFF 383 (398)
Q Consensus 380 al~~ 383 (398)
++..
T Consensus 244 ~~~~ 247 (445)
T 4b4t_P 244 IYQT 247 (445)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.15 Score=46.73 Aligned_cols=97 Identities=16% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CCHH----HH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKP---SDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD-INFE----VL 264 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~----~~ 264 (398)
.++..+|..|...|++++|.+.|.++..... ...+.+..+..++...+++..+..++.++...... .++. ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556666667777777777777666655322 22455666666666667777776666666443111 0111 22
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
...|.++...++|..|...|..+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 3345555566667776666655543
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.19 Score=46.02 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhc
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVS--KDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKD 303 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 303 (398)
..++..+|..|...|++++|.+.|.++.... +..-.+.+..+..++...+++..+...+.++.......+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-------- 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-------- 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--------
Confidence 4578899999999999999999999988753 222467888899999999999999999999877654331
Q ss_pred cccccccccccccCCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 015907 304 GRSGDKKETEPQKVDPI---QVELLLGKAYSDGGRVSDAVAVYDRLISSYP 351 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 351 (398)
++. ......|.++...++|.+|...|-.++....
T Consensus 203 --------------d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 203 --------------DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp --------------CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred --------------CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 222 2333478888899999999999988876443
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.04 E-value=2 Score=44.65 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---C----------------
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV---S---------------- 256 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~---------------- 256 (398)
..+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345555667777766654 44566778888899999999999999999999887321 0
Q ss_pred -C--CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHHHHHHHHhC
Q 015907 257 -K--DINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELLLGKAYSDG 333 (398)
Q Consensus 257 -p--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 333 (398)
+ ...+..|..+..++...+.++.+++..+.|+....... ...+...|..+=..+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--------------------~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD--------------------EDLSIAITHETLKTACAA 951 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCC--------------------hhhHHHHHHHHHHHHHhh
Confidence 0 01234567788888999999999999888877533220 000123455577778888
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 015907 334 GRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVG 371 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 371 (398)
|+|++|...+...-. ...-...+..+...+++.|..+
T Consensus 952 ~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 952 GKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence 999999877754422 2223445555555555555543
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=3.7 Score=37.55 Aligned_cols=171 Identities=6% Similarity=-0.088 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC----CC--
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLA----ELGDYTRAVSLLQDLAKEK----PS-- 224 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~----p~-- 224 (398)
+....+...+...+...++++...+.+.-..........+...+..... .....+. ......+... .+
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccch
Confidence 4455666677778888899988877776555544444333332222211 1122221 1112222211 11
Q ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--C---CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 225 -----DPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSK--D---INFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 225 -----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
.......|+.++...|++.+|...+.....-.- . .-.+.+.....++...+++.+|...+.++.......
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 134567899999999999999999998764311 1 024577888999999999999999998875422111
Q ss_pred CCCchhhhccccccccccccccCCCc---hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 295 KSDDLSVKDGRSGDKKETEPQKVDPI---QVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
...|. ..+...|.++...++|.+|-.+|..++.
T Consensus 211 ---------------------~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 ---------------------PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---------------------CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11111 2334489999999999999999988875
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.24 Score=45.82 Aligned_cols=64 Identities=22% Similarity=0.241 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPND-------FRGYLAKGIILKENGKVGDAERMFIQARFFAPEK 387 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 387 (398)
.+..+-..|...+.+++|..+..++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44458899999999999999999884 4532 4567889999999999999999999999988765
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.38 Score=44.48 Aligned_cols=130 Identities=10% Similarity=0.044 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHHccCHHHHH----------HHHHHHHhh-----
Q 015907 202 LAELGDYTRAVSLLQDLAK---E--------KPSDPDVFRLLGEVKYELKDYEGSA----------AAYRVSTMV----- 255 (398)
Q Consensus 202 ~~~~g~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~----- 255 (398)
+...+++++|..+-..++. + ++-...+|+.++.++...|+..... ..+-.++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 4556777777777665541 1 2223456666666666666654422 222222222
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhccccccccccccccCCCc--hHHHHHHHHHHhC
Q 015907 256 SKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPI--QVELLLGKAYSDG 333 (398)
Q Consensus 256 ~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~~~~ 333 (398)
++......+..+-..|...+.+++|..+..++. ++.. ...+.. ...+++|.++.-+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--------------------~~sn~q~~rY~YY~GRI~a~q 283 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--------------------DVSSSLEARYFFYLSKINAIQ 283 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--------------------TSCHHHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--------------------cCCHHHHHHHHHHHHHHHHHh
Confidence 332234567888899999999999999987762 2211 000111 2344589999999
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q 015907 334 GRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 334 g~~~~A~~~~~~al~~~p~~ 353 (398)
++|.+|..++..|+...|.+
T Consensus 284 ~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 284 LDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp TCHHHHHHHHHHHTSSCSCS
T ss_pred ccHHHHHHHHHHHHHhCCcc
Confidence 99999999999999877654
No 261
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.84 E-value=5.8 Score=29.43 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCCCchhhhhhhcchhhcHHHH--HHHHHHHHhccCCCCCCCCCCChHHH
Q 015907 83 NFEERLAAVRRSALEQKKAEEIKEFGPIDYDAPIETEKKTIGLGTKIGVGVA--VVIFGLVFALGDFLPSGSVSPTEEAG 160 (398)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p~~~~~~~~~lg~~~g~~~A--~~~~~~a~~~~~~~~~~~~~p~~~~~ 160 (398)
+....|-.+++....+..++..++..+.....|.....|.+ -.++ +.| ..+|+..-
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~I-CNii---D~a~C~y~v~vLd------------------ 63 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFI-CNLL---ESIDCRYMFQVLD------------------ 63 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHH-HHHH---HHCCHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceee-eecc---hhhchhHHHHHHH------------------
Confidence 45567777888888888899999998888877766555544 1111 111 01111111
Q ss_pred HHHHHHHH--HHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 015907 161 VVNKELSE--EEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYE 238 (398)
Q Consensus 161 ~~~la~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 238 (398)
..|..+ ...|+...-+.+|-+.-. +.+..-..-..+..+|.-++-.+.+...+...+-+++.+..+|.+|.+
T Consensus 64 --~IGkiFDis~C~NlKrVi~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K 137 (172)
T 1wy6_A 64 --KIGSYFDLDKCQNLKSVVECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR 137 (172)
T ss_dssp --HHGGGSCGGGCSCTHHHHHHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH
T ss_pred --HHhhhcCcHhhhcHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 111111 123555555555544311 122222222455667777777777776666566667777788888888
Q ss_pred ccCHHHHHHHHHHHHhhC
Q 015907 239 LKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 239 ~g~~~~A~~~~~~al~~~ 256 (398)
.|+..+|.+.+.+|-+..
T Consensus 138 lg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 138 VGDERDATTLLIEACKKG 155 (172)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred hcchhhHHHHHHHHHHhh
Confidence 888888888777776654
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.18 E-value=19 Score=36.22 Aligned_cols=149 Identities=9% Similarity=0.031 Sum_probs=77.0
Q ss_pred hhcchh-hc--HHHHHHHHHHHHhccCCCCCCCCCCCh--HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 015907 123 IGLGTK-IG--VGVAVVIFGLVFALGDFLPSGSVSPTE--EAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEG 197 (398)
Q Consensus 123 ~~lg~~-~g--~~~A~~~~~~a~~~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 197 (398)
+|+|.+ .| -+.+...+..++.-+ ... ..+-+.+|.++...|+-+-....+..+.+...+...-...
T Consensus 459 LGLGla~~GS~~eev~e~L~~~L~dd---------~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 459 LGIGLAAMGSANIEVYEALKEVLYND---------SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHTC---------CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHH
Confidence 456665 55 456666666666433 111 1344566777777777666566666555533222222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDV----FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLA 273 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~ 273 (398)
+|..+...|+.+.+..+.+.+... .++.. -+.+|..|...|+.......+..+.. +++.+..-...+|..+..
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhc
Confidence 444445667877776666655443 23332 23456677788886555456666554 333123222233333344
Q ss_pred cCCchHHHHH
Q 015907 274 AKKPDEAVQF 283 (398)
Q Consensus 274 ~~~~~~A~~~ 283 (398)
.|+.+.+...
T Consensus 607 ~g~~e~v~rl 616 (963)
T 4ady_A 607 LRDYTTVPRI 616 (963)
T ss_dssp SSSCSSHHHH
T ss_pred cCCHHHHHHH
Confidence 5555433333
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.06 E-value=5.3 Score=40.06 Aligned_cols=124 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC---C---CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISP---K---DS----TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDP-- 226 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 226 (398)
-+.+.+|.++...+ .+++..+...+.... . .. .+...+|.++.-.++ +++.+.+...+..+....
T Consensus 414 GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~ 490 (963)
T 4ady_A 414 GSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGE 490 (963)
T ss_dssp HHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHH
Confidence 34555555554444 356666666665332 0 11 244456666555554 455566666655332111
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 286 (398)
.+-+.+|.++.-.|+.+-....+..+.....+ ...-...+|..+...|+.+.+..+++.
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e~~~~li~~ 549 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQELADDLITK 549 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGGGGHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChHHHHHHHHH
Confidence 23345566666666665555555544442222 222223333344455666555555443
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.77 E-value=6 Score=29.31 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015907 328 KAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFA 384 (398)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 384 (398)
..+..+|+-++-...+...+...+-+++.++.+|.+|.+.|+..+|.+++.+|-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 455778888888888888766677789999999999999999999999999998753
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.69 E-value=15 Score=29.20 Aligned_cols=92 Identities=7% Similarity=-0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCCCCchhhhccccccccccccccCCCchHHHH--HHHHHHhCCChHHHHHHHHHHHHh--CCCChHHH
Q 015907 282 QFLLASRERLSTGKSDDLSVKDGRSGDKKETEPQKVDPIQVELL--LGKAYSDGGRVSDAVAVYDRLISS--YPNDFRGY 357 (398)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 357 (398)
.+++++...+...+. ...+|..+.+| .+..+ ..+...++..+|..+... .-..+..|
T Consensus 58 ~lLErc~~~F~~~~r------------------YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfY 118 (202)
T 3esl_A 58 STMERCLIYIQDMET------------------YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFY 118 (202)
T ss_dssp HHHHHHHHHHTTCGG------------------GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHH
T ss_pred HHHHHHHHHhccccc------------------ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHH
Confidence 578888877665533 34444444444 44433 245577889999888764 44567888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q 015907 358 LAKGIILKENGKVGDAERMFIQARFFAPEKVKALV 392 (398)
Q Consensus 358 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 392 (398)
...|..+...|++.+|.+.|+.+++..-.-.+-+.
T Consensus 119 e~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 119 EEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 99999999999999999999999987654444333
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.60 E-value=11 Score=38.18 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=17.2
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015907 186 SISPKDSTALEGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 186 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 218 (398)
..-|.++..-+.+|.+|...|++++|..+|+++
T Consensus 834 ~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 834 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444455555555555555555555543
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.27 E-value=13 Score=37.64 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-------------------
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV-SK------------------- 257 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p------------------- 257 (398)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- ..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556667778877554 355677888888899999999999999999999987421 10
Q ss_pred -C-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 015907 258 -D-INFEVLRGLTNALLAAKKPDEAVQFLLASRERL 291 (398)
Q Consensus 258 -~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 291 (398)
. .....|..+..++...+-++-++...+.|+...
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 0 012356677888888888888888888887643
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=81.03 E-value=17 Score=27.89 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 338 DAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 338 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
++..+|..+... .-..+..|...|..+...|++.+|.++|+.+++....-.+-+..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 366677777653 34567888899999999999999999999999876554444433
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.99 E-value=40 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 259 INFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 259 ~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
.++..+..+|..|...+++.+|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 37888899999999999998888887
No 270
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=74.28 E-value=35 Score=28.07 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYE-LKDYEGSAAAY 249 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~ 249 (398)
+-+..+|.+.-+.++|++...+.+++.+.++.- .+=...+..+|.. .|....+...+
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRii 63 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVI 63 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 345667888888888888888888888876543 3444555555533 23334444444
No 271
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=73.69 E-value=30 Score=28.67 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHH
Q 015907 191 DSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSD-PDVFRLLGEVKYE-LKDYEGSAAAYRV 251 (398)
Q Consensus 191 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~ 251 (398)
+.+-+..+|.+..+.++|++.+.+.+++.+.++.- .+=...|..+|.. .|....+...+..
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiiss 92 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 92 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhH
Confidence 44567788899999999999999999998877643 4445556666543 3444444444433
No 272
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=73.48 E-value=30 Score=28.77 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-ccCHHHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEK--PS-DPDVFRLLGEVKYE-LKDYEGSAAAYRV 251 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 251 (398)
-+-+..++.+..+.++|++.+.+.+++.+.+ +. +.+=...+..+|-. .|....+...+..
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3456678888899999999999999999876 43 34455556655543 3444444444443
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=72.15 E-value=9.8 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPND 353 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~ 353 (398)
+|..+...|++++|...|-+|+...|.-
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555555555443
No 274
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=71.75 E-value=21 Score=29.20 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-ccCHHHHHHHH
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEKPS-DPDVFRLLGEVKYE-LKDYEGSAAAY 249 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~ 249 (398)
-+-+..+|.+..+.++|++.+.+.+++.+.++. +.+=...+..+|-. .|....+...+
T Consensus 5 re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRii 64 (234)
T 2br9_A 5 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRII 64 (234)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345567788888899999999999999887654 34445556655543 23333444444
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=71.16 E-value=11 Score=24.32 Aligned_cols=31 Identities=0% Similarity=0.005 Sum_probs=19.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCCHH
Q 015907 163 NKELSEEEKNVLQTRLKKYEETLSISPKDST 193 (398)
Q Consensus 163 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 193 (398)
.+|..+...|++++|..+|-+++...|+-..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4566666666666666666666666655433
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.00 E-value=27 Score=27.74 Aligned_cols=66 Identities=0% Similarity=-0.100 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
..+|..++..+ ..++..++..+|.-+... .-..+..|...|..+...|++.+|...|+..++..-.
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34666666654 234477888888888764 4566788888999999999999999999999987654
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.37 E-value=51 Score=28.26 Aligned_cols=62 Identities=8% Similarity=-0.052 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHH---------------HHh----CCCChHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 015907 321 QVELLLGKAYSDGGRVSDAVAVYDRL---------------ISS----YPNDFRGYLAKGI-ILKENGKVGDAERMFIQA 380 (398)
Q Consensus 321 ~~~~~la~~~~~~g~~~~A~~~~~~a---------------l~~----~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 380 (398)
+.+..+|..|...|++.+|..+|-.. .+. .|.....+...+. .|...|+...|...|...
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45566999999999999998877321 011 2222344433333 456788888888887765
Q ss_pred Hh
Q 015907 381 RF 382 (398)
Q Consensus 381 l~ 382 (398)
.+
T Consensus 215 ~~ 216 (312)
T 2wpv_A 215 LE 216 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 278
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=67.19 E-value=0.00087 Score=60.86 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 015907 155 PTEEAGVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGE 234 (398)
Q Consensus 155 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 234 (398)
-+.+.+|..+|.++...+...+|+..|-++ +++..+.....+..+.|.|++-+.+++-+-+. -..+.+-..|..
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ 124 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIF 124 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHH
Confidence 455678888888888888888888877553 34444555556666778888888877666543 233445556777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCCCCchhhhcccccccccccc
Q 015907 235 VKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDEAVQFLLASRERLSTGKSDDLSVKDGRSGDKKETEP 314 (398)
Q Consensus 235 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (398)
+|.+.++..+-.+.+. .|+ ..-....|.=++..|.|+.|.-+|... ..-..-+.....++.+.. ....+
T Consensus 125 ayAk~~rL~elEefl~-----~~N--~A~iq~VGDrcf~e~lYeAAKilys~i---sN~akLAstLV~L~~yq~-AVdaA 193 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-----GPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLASTLVHLGEYQA-AVDGA 193 (624)
T ss_dssp HHHTSCSSSTTTSTTS-----CCS--SSCTHHHHHHHHHSCCSTTSSTTGGGS---CCCTTTSSSSSSCSGGGS-STTTT
T ss_pred HHHhhCcHHHHHHHHc-----CCC--cccHHHHHHHHHHccCHHHHHHHHHhC---ccHHHHHHHHHHHHHHHH-HHHHH
Confidence 7777777554333221 233 222356777888888888887776322 000000111111111111 11122
Q ss_pred ccCCCchHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 315 QKVDPIQVELLLGKAYSDGGRVSDAVAVYDRLISSYPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 315 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
.+.+....|-....++...+++.-|..+--..+- +|+..+ .+...|...|-+++-+.+++.++.+..-+......
T Consensus 194 rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~---elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTE 268 (624)
T 3lvg_A 194 RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELE---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 268 (624)
T ss_dssp TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCS---GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHH
T ss_pred HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHH---HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHH
Confidence 2233344555566666666666666555444432 443322 24455667788888888888888766655554433
No 279
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=65.10 E-value=59 Score=26.98 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-CCHHHHHHHHHHHHH-ccCHHHHHHHHH
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEK---P-SDPDVFRLLGEVKYE-LKDYEGSAAAYR 250 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~~la~~~~~-~g~~~~A~~~~~ 250 (398)
+-+..++.+..+.++|++.+.+.+++.+.+ + -+.+=...+..+|.. .|....+...+.
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiis 91 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIIS 91 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 456678888899999999999999999876 4 334555666666644 233444444443
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=64.74 E-value=8.9 Score=25.54 Aligned_cols=19 Identities=5% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHhccHHHHHHHHHHHHh
Q 015907 168 EEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~ 186 (398)
.-..|++++|+.+|..+++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3367888888777776654
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.85 E-value=14 Score=31.75 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcchhhcC
Q 015907 83 NFEERLAAVRRSALEQKKAEEIKEFGPIDYDA 114 (398)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~ 114 (398)
.+.++++...+....+++++|+..|+.++..-
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 45568888889999999999999999887543
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.56 E-value=10 Score=25.24 Aligned_cols=23 Identities=4% Similarity=0.307 Sum_probs=14.7
Q ss_pred HHHHHHHhccHHHHHHHHHHHHh
Q 015907 164 KELSEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 164 la~~~~~~g~~~~A~~~~~~~l~ 186 (398)
.|...-..|++++|+.+|..+++
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34444467788888777766554
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.38 E-value=49 Score=25.16 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH-----HH-HHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 198 AAVTLAELGDYTRAVSLLQDLAKEKPSD---PD-----VF-RLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 198 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~-----~~-~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
.+..++..|+|=+|-+.++.+....+.. .. +. ...|..+...|+...|...+.+++..
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555567777777766666654433 11 12 22344556678888888888888763
No 284
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.92 E-value=50 Score=25.11 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCC---HHHHHH------HHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 161 VVNKELSEEEKNVLQTRLKKYEETLSISPKD---STALEG------AAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 161 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~------la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
-+..+..++..|+|=+|-+.++.+....+.. ...|.. .|..+.+.|+..-|..++.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556777788899999999999999887654 223333 334567789999999999999874
No 285
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=61.42 E-value=24 Score=28.12 Aligned_cols=51 Identities=8% Similarity=-0.138 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISPKDST-----ALEGAAVTLAELGDYT 209 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~~g~~~ 209 (398)
...+.+|..++..++|.+|...|..++...|.... ++..+.-+-+-+|++.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44566777777777777777777777777665532 2333333445556543
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.00 E-value=50 Score=24.82 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHhh
Q 015907 337 SDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVDQY 395 (398)
Q Consensus 337 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 395 (398)
+++..+|..+... .-..+..|...|..+...|++.+|.++|+.+++....-.+-+...|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3477888877653 3455778889999999999999999999999997765555444433
No 287
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=60.33 E-value=32 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhhcchhhcCC
Q 015907 83 NFEERLAAVRRSALEQKKAEEIKEFGPIDYDAP 115 (398)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~eA~~~~~~~~~~~p 115 (398)
...++++...+....+++++|+..|+.++..-|
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 456688889999999999999999999876554
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.92 E-value=70 Score=25.81 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Q 015907 337 SDAVAVYDRLISS--YPNDFRGYLAKGIILKENGKVGDAERMFIQARFFAPEKVKALVD 393 (398)
Q Consensus 337 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 393 (398)
+++..+|..+... .-..+..|...|..+...|++.+|..+|+.+++..-.-.+-+..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 4667777777664 34557788899999999999999999999999876554444433
No 289
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=57.36 E-value=38 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=25.8
Q ss_pred CCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 318 DPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 318 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
....++.++|..+.+.+++.+|+..+-.+-.
T Consensus 294 ~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 294 HHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3446777899999999999999999887754
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.45 E-value=60 Score=29.60 Aligned_cols=95 Identities=7% Similarity=-0.142 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcc--CCCCCCCCC-CChHHHH----HHHHHHHHHhccHHHHHHHHHHHHhcCC--C--------CHH
Q 015907 131 VGVAVVIFGLVFALG--DFLPSGSVS-PTEEAGV----VNKELSEEEKNVLQTRLKKYEETLSISP--K--------DST 193 (398)
Q Consensus 131 ~~~A~~~~~~a~~~~--~~~~~~~~~-p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p--~--------~~~ 193 (398)
++.+...+.+++... +..+....+ |..-... ..+-.+|++.++...+...+...-...+ . -..
T Consensus 142 le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~ 221 (455)
T 3t5v_B 142 LSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIE 221 (455)
T ss_dssp HHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEe
Confidence 666777777777653 111111111 2222222 2344678888888888777765433221 1 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 015907 194 ALEGAAVTLAELGDYTRAVSLLQDLAKE-KPSD 225 (398)
Q Consensus 194 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 225 (398)
.++.+|..+...++|.+|.+.+..|+.. .|..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 6788999999999999999999999988 6654
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=53.33 E-value=28 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~a 218 (398)
...+..+...|+|++||++.+++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHH
Confidence 33444455555555555554444
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=52.22 E-value=16 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=19.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
+|..+...|+++.|+..|-+|+...|.-.
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 67777777777777777777776666533
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.98 E-value=18 Score=24.73 Aligned_cols=29 Identities=0% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 015907 162 VNKELSEEEKNVLQTRLKKYEETLSISPK 190 (398)
Q Consensus 162 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 190 (398)
..+|..+...|+++.|+.+|-+++...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35677777778888888877777776654
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=50.93 E-value=40 Score=26.78 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCCh
Q 015907 322 VELLLGKAYSDGGRVSDAVAVYDRLISSYPNDF 354 (398)
Q Consensus 322 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 354 (398)
..+++|.++...++|.+|...+..|+...|...
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 445599999999999999999999999888664
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.65 E-value=21 Score=32.56 Aligned_cols=62 Identities=13% Similarity=-0.024 Sum_probs=50.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCC--C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLISSYP--N--------DFRGYLAKGIILKENGKVGDAERMFIQARFF-APEK 387 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 387 (398)
+-.+|.+.++..-+...++..-...+ . -...++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 67899999999999988876544322 1 1457889999999999999999999999998 7754
No 296
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.01 E-value=33 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 015907 227 DVFRLLGEVKYELKDYEGSAAAYRVST 253 (398)
Q Consensus 227 ~~~~~la~~~~~~g~~~~A~~~~~~al 253 (398)
..+...+..+...|.|++||++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345567777888888888888777665
No 297
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.97 E-value=21 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=12.1
Q ss_pred HHHhccHHHHHHHHHHHHh
Q 015907 168 EEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 168 ~~~~g~~~~A~~~~~~~l~ 186 (398)
.-..|+|++|+.+|..+++
T Consensus 25 ~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 25 LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3366777777777665543
No 298
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=49.36 E-value=1.1e+02 Score=25.02 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHH-----hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHh
Q 015907 336 VSDAVAVYDRLIS-----SYPNDFR---GYLAKGIILK-ENGKVGDAERMFIQARF 382 (398)
Q Consensus 336 ~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al~ 382 (398)
.+.|...|+.|.+ +.|.+|- ...+.+..|+ -+++.++|....++|+.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677888888765 4666653 3344455544 56999999988777764
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=48.10 E-value=1.4e+02 Score=25.92 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 015907 257 KDINFEVLRGLTNALLAAKKPDEAVQFL 284 (398)
Q Consensus 257 p~~~~~~~~~la~~~~~~~~~~~A~~~~ 284 (398)
|..+++.+..+|..|...+++.+|..+|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4347889999999999999999988887
No 300
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.69 E-value=22 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=8.8
Q ss_pred HhccHHHHHHHHHHHH
Q 015907 170 EKNVLQTRLKKYEETL 185 (398)
Q Consensus 170 ~~g~~~~A~~~~~~~l 185 (398)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4566666665555443
No 301
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=47.58 E-value=63 Score=28.82 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=26.3
Q ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 015907 317 VDPIQVELLLGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 317 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.....++.++|..+.+.+++.+|+..+-.+-.
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 33446778899999999999999999987754
No 302
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=47.46 E-value=20 Score=23.50 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 015907 196 EGAAVTLAELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 196 ~~la~~~~~~g~~~~A~~~~~~al~ 220 (398)
..+|+-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3456666777777777777776665
No 303
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=46.41 E-value=1.6e+02 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCChHHHHHHHH
Q 015907 320 IQVELLLGKAYSDGGRVSDAVAVYDRLISS------YPNDFRGYLAKGI 362 (398)
Q Consensus 320 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~ 362 (398)
-.++.++|..+.+.+++.+|+..+..+-.. ..++.++|..+-.
T Consensus 303 vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~e 351 (489)
T 4gq4_A 303 IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 351 (489)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHH
T ss_pred ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHH
Confidence 456777999999999999999999887652 3345555554433
No 304
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.94 E-value=1.6e+02 Score=26.09 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=57.8
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcC-------C--------CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C--
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSIS-------P--------KD--STALEGAAVTLAELGDYTRAVSLLQDLAKE---K-- 222 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~-------p--------~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~-- 222 (398)
..+.....+.++|++++++..... + .. ..+...++..|...|+.++|...++++-.. .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345556678889998888764321 0 01 235567778888889999998888887542 1
Q ss_pred CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 223 PS---DPDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 223 p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
++ ....+...+..+...+++..+...+-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 123445556677777888777666666554
No 305
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=45.73 E-value=25 Score=23.32 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=11.7
Q ss_pred HHHHhccHHHHHHHHHHHHh
Q 015907 167 SEEEKNVLQTRLKKYEETLS 186 (398)
Q Consensus 167 ~~~~~g~~~~A~~~~~~~l~ 186 (398)
-.-..|++++|+.+|..+++
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33355666666666665544
No 306
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.37 E-value=23 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al 347 (398)
+|+-|...|+|+.|+.+|+.++
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 5555555566666666655544
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.31 E-value=54 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKD 241 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 241 (398)
+.....|...+..|+|.-|.++...++..+|++..+...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999999999999999888763
No 308
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.03 E-value=37 Score=32.72 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 015907 160 GVVNKELSEEEKNVLQTRLKKYEETLSISPKDSTALEGAAVTLAELGD 207 (398)
Q Consensus 160 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 207 (398)
.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 455667788899999999999999999999999999999998877653
No 309
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.73 E-value=40 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHhCCChHHHHHHHHHH
Q 015907 327 GKAYSDGGRVSDAVAVYDRL 346 (398)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~a 346 (398)
|.-.-..|++++|+.+|..+
T Consensus 26 Ave~D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH
Confidence 33334444444444444443
No 310
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.35 E-value=2e+02 Score=25.51 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 015907 265 RGLTNALLAAKKPDEAVQFLLASRE 289 (398)
Q Consensus 265 ~~la~~~~~~~~~~~A~~~~~~a~~ 289 (398)
..++..|...|+.++|...++++..
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444555555555444443
No 311
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=39.42 E-value=45 Score=22.02 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=9.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al 347 (398)
.|.-.-..|++++|+.+|..++
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333444444444444444443
No 312
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=35.62 E-value=1e+02 Score=20.88 Aligned_cols=24 Identities=8% Similarity=-0.205 Sum_probs=12.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHhcC
Q 015907 165 ELSEEEKNVLQTRLKKYEETLSIS 188 (398)
Q Consensus 165 a~~~~~~g~~~~A~~~~~~~l~~~ 188 (398)
|..++..|+|=+|-+.++......
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC
Confidence 344444455555555555555544
No 313
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=34.71 E-value=59 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=12.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.|.-.-..|++++|+.+|..+++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555666666666655543
No 314
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.32 E-value=81 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 015907 203 AELGDYTRAVSLLQDLAK 220 (398)
Q Consensus 203 ~~~g~~~~A~~~~~~al~ 220 (398)
-..|+|++|+.+|..+++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344555555555555443
No 315
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.46 E-value=2.5e+02 Score=24.33 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HhhCCCCCHHHHHH-HHHHHHHcCCchHHHHHHHH
Q 015907 224 SDPDVFRLLGEVKYELKDYEGSAAAYRVS----------------TMVSKDINFEVLRG-LTNALLAAKKPDEAVQFLLA 286 (398)
Q Consensus 224 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------l~~~p~~~~~~~~~-la~~~~~~~~~~~A~~~~~~ 286 (398)
.+++.+..+|..|.+.+++.+|..+|--. ....|. ..+.+.. ....|...++...|...+..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-TAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45666666777777767766666665210 001122 3333332 33344667777777776655
Q ss_pred HHH
Q 015907 287 SRE 289 (398)
Q Consensus 287 a~~ 289 (398)
...
T Consensus 213 f~~ 215 (336)
T 3lpz_A 213 FTS 215 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 316
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=32.30 E-value=2e+02 Score=25.16 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCCHHHHHHHH
Q 015907 196 EGAAVTLAELG---DYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV----SKDINFEVLRGLT 268 (398)
Q Consensus 196 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~la 268 (398)
..|-.+++..| +|.-|+..+-.+-++.|.... ..++..|.+++.. ..+.+..-+..+|
T Consensus 239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~l~L~~~AI~sa~~yY~n~HvYPYtylg 303 (472)
T 3re2_A 239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR---------------PPAEELFKEAITVAKREYSDHHIYPYTYLG 303 (472)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHH
T ss_pred HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccchhhhh
Confidence 44445555554 455566666555555553211 1144455555443 1222455677788
Q ss_pred HHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 269 NALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
..+++.+++.+|+..+..+-..+...
T Consensus 304 Gy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 304 GYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 88889999999999988887766654
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.03 E-value=2e+02 Score=23.16 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAKE--KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+|..++.. .+++..+|.-+... .-..+..|...|..+...|++.+|..+|+..++..-.
T Consensus 121 klWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 121 RIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 355555542 24666777766653 4566778888899999999999999999999987654
No 318
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.34 E-value=69 Score=21.64 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=10.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al 347 (398)
.|.-.-..|+|++|+.+|..++
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444455555555555444
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=31.05 E-value=1.2e+02 Score=20.44 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=39.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHH---H--HHHHHHHHcCCchHHHHHHHHHHHHhcCC
Q 015907 232 LGEVKYELKDYEGSAAAYRVSTMVSKDINFEVL---R--GLTNALLAAKKPDEAVQFLLASRERLSTG 294 (398)
Q Consensus 232 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~--~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 294 (398)
.|..++..|+|=+|-+.++.+....|...-..+ . ..|......|+. |...+.++...+...
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 455666778888888888888777754111222 2 233344567777 888888888866544
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=30.27 E-value=92 Score=20.48 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=12.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~ 348 (398)
.|.-.-..|++++|+.+|..+++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455666666666655543
No 321
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.35 E-value=1.4e+02 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.112 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
..++..+|++|+..|+|++|+...++++..
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 457888999999999999999999999863
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.94 E-value=2.3e+02 Score=22.67 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDLAKEKPSDPDVFRLLGEV 235 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 235 (398)
.++++.|.|++|.+.+++.+..+|.+......|..+
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455667777777777777766555444444444433
No 323
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.01 E-value=76 Score=22.59 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=10.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLI 347 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al 347 (398)
.|.-.-..|+|++|+.+|..++
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333344455555555555544
No 324
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=26.69 E-value=1.6e+02 Score=26.81 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
..++..+|++|+..|+|++|+...++++...
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 4578889999999999999999999998753
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.60 E-value=1.5e+02 Score=26.95 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKE 221 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 221 (398)
..++..+|++|+..|+|++|+...++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 458888999999999999999999998863
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.15 E-value=2.2e+02 Score=21.66 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 193 TALEGAAVTLAELGDYTRAVSLLQDLAK--EKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 193 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
.+|..++... + .+.++|..+.. +....+..|...|..+...|++.+|.++|+..++..-.
T Consensus 67 klWl~ya~~~---~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 67 NLWLKLGRLC---N---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHC---S---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4555555542 3 36667776665 34566788889999999999999999999999998754
No 327
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=24.78 E-value=3.1e+02 Score=24.56 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHcCCchHHH
Q 015907 206 GDYTRAVSLLQDLAKEKPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMV----SKDINFEVLRGLTNALLAAKKPDEAV 281 (398)
Q Consensus 206 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~la~~~~~~~~~~~A~ 281 (398)
.+|.-|+..+-.+-++.|.... ..++.+|++++.. ..+....-|..+|-.+.+.+++.+|+
T Consensus 259 ~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl 323 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREAL 323 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHH
Confidence 3455666666666666554311 1344566666553 22225566778899999999999999
Q ss_pred HHHHHHHHHhcCC
Q 015907 282 QFLLASRERLSTG 294 (398)
Q Consensus 282 ~~~~~a~~~~~~~ 294 (398)
..+..+-..+...
T Consensus 324 ~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 324 QAWADTATVIQDY 336 (489)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHhhhhhhhhhhc
Confidence 9999887776654
No 328
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=24.50 E-value=1.8e+02 Score=26.70 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015907 192 STALEGAAVTLAELGDYTRAVSLLQDLAKEK 222 (398)
Q Consensus 192 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 222 (398)
..++..+|++|+..|+|++|+...++++...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999998753
No 329
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.96 E-value=2.1e+02 Score=25.88 Aligned_cols=29 Identities=10% Similarity=-0.106 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTM 254 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 254 (398)
..++..++.+|+..|++++|+...++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45677788888888888888888888875
No 330
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.30 E-value=3.7e+02 Score=23.01 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCC----CCH----HH--------HHHHHHHHH-HcCC-----HHHHHHHHH
Q 015907 159 AGVVNKELSEEEKNVLQTRLKKYEETLSISP----KDS----TA--------LEGAAVTLA-ELGD-----YTRAVSLLQ 216 (398)
Q Consensus 159 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~~----~~--------~~~la~~~~-~~g~-----~~~A~~~~~ 216 (398)
......|.-+...|++++|+..|+.++..-| ++. ++ .|.+|.... ...+ .++-...++
T Consensus 103 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lE 182 (320)
T 3mkr_B 103 IQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICE 182 (320)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHH
Confidence 3456678888999999999999999987643 221 11 112221111 0111 111111111
Q ss_pred HHH-----HhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 217 DLA-----KEKPSDP-DVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 217 ~al-----~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
-+. ++.|.+. -++..--...++.++|..|...-++.+++.|.
T Consensus 183 LAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 183 MAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 111 1112111 12222235567889999999999999999876
No 331
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.19 E-value=2.2e+02 Score=25.74 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMV 255 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 255 (398)
..++..+|.+|...|++++|+...++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 457778889999999999999998888763
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.79 E-value=2.6e+02 Score=20.95 Aligned_cols=48 Identities=4% Similarity=-0.015 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 015907 211 AVSLLQDLAKE--KPSDPDVFRLLGEVKYELKDYEGSAAAYRVSTMVSKD 258 (398)
Q Consensus 211 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 258 (398)
+.++|.-+... ....+..|...|..+...|++.+|..+|+..++..-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 55555555542 3344566666667777777777777777777665543
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.23 E-value=3.2e+02 Score=21.90 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHH--------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHcCCchH
Q 015907 208 YTRAVSLLQDLAKEKPSDPDV--------FRLLGEVKYELKDYEGSAAAYRVSTMVSKDINFEVLRGLTNALLAAKKPDE 279 (398)
Q Consensus 208 ~~~A~~~~~~al~~~p~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~la~~~~~~~~~~~ 279 (398)
.+.|+..++..-+-.+-.... -.....++.+.|.|++|.+.+++.+..++. +......|..+-....-+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s-~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPT-TQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGG-GHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCC-chHHHHHHHHHHhccCcccH
Confidence 356777776665555432111 123346778899999999999999998776 66667777777666655544
Q ss_pred HH
Q 015907 280 AV 281 (398)
Q Consensus 280 A~ 281 (398)
-+
T Consensus 167 ~l 168 (235)
T 3bu8_A 167 VI 168 (235)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 334
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.99 E-value=1.9e+02 Score=19.28 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=13.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 015907 326 LGKAYSDGGRVSDAVAVYDRLIS 348 (398)
Q Consensus 326 la~~~~~~g~~~~A~~~~~~al~ 348 (398)
-|.-+.+.++|.+|...|+++..
T Consensus 59 eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 59 EGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHc
Confidence 44445556666666666666554
No 335
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.80 E-value=2.1e+02 Score=20.67 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=9.2
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 015907 200 VTLAELGDYTRAVSLLQDL 218 (398)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~a 218 (398)
.+|...++.+..+..++.+
T Consensus 48 rlyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 48 RLYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHH
Confidence 3444455555555555443
No 336
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=20.65 E-value=2.9e+02 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 015907 226 PDVFRLLGEVKYELKDYEGSAAAYRVSTMVS 256 (398)
Q Consensus 226 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 256 (398)
..++..+|.+|+..+++++|+.+.++++...
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4577889999999999999999999998754
Done!