BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015911
(398 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 26/105 (24%)
Query: 136 PGP----PPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATY-NPLIGRKVWT 190
PGP P SK KKP L GQ P+ S TY + ++G++V
Sbjct: 87 PGPDTPSPVQSKFKKP------LLVIGQT---------PSPPQSVVITYGDEVVGKQVRV 131
Query: 191 RWPEDNHFYEAVITDYNPNEGRHALVYD------INTADETWEWV 229
WP D +Y+ +T Y+ EG+H + Y+ ++ E EWV
Sbjct: 132 YWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
>sp|Q7Z589|EMSY_HUMAN Protein EMSY OS=Homo sapiens GN=EMSY PE=1 SV=2
Length = 1322
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 9 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 54
+ +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 64
>sp|Q8BMB0|EMSY_MOUSE Protein EMSY OS=Mus musculus GN=Emsy PE=1 SV=2
Length = 1264
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 9 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR 54
+ +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHR 64
>sp|Q7ZUV7|EMSY_DANRE Protein EMSY OS=Danio rerio GN=emsy PE=2 SV=1
Length = 1173
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 9 IHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILR 68
+ +E +AY+ V+ A +AQ D +T +K+ L+ EL + L +S E HR + + D+ +
Sbjct: 20 LRKLELEAYAGVISALRAQGD-LTKDKKELLGELTRVLSISTERHRAEVRRAVNDERLTT 78
Query: 69 I 69
I
Sbjct: 79 I 79
>sp|O55225|OTOG_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=2
Length = 2910
Score = 36.2 bits (82), Expect = 0.41, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 94 PSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTG 153
P P + ++ S L+ G+PS G H + ++L P PP P S
Sbjct: 1744 PHPAQHTTTAPGPSALSPGILAAGSPSTGAHRPGATALASLEPTRPPHLLSGLPLDTSLP 1803
Query: 154 LAGRGQ---VANRGSSGAFPANGPSEAAT 179
LA G VA GS G P P AT
Sbjct: 1804 LAKVGTSAPVATPGSKGYIPTPPPQHQAT 1832
>sp|B6RSP1|PKHA7_DANRE Pleckstrin homology domain-containing family A member 7 OS=Danio
rerio GN=plekha7 PE=2 SV=2
Length = 1197
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 22/123 (17%)
Query: 63 DDIILRIREWRKASGLQPGMPSIPQPVHDPAP--SPTVSASRKKTKTSQSVASLSTGAPS 120
D+ + ++ EW++ + G PS PV+ PAP S VS++R + S+SV
Sbjct: 493 DNTVWQLFEWQQRQQFRHGSPSA--PVYTPAPDYSTAVSSTRNNSDVSRSV--------- 541
Query: 121 PGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQV---ANRGSSGAFPANGPSEA 177
SV P+ + + P PPG++ P+ T A R V +R P+N P
Sbjct: 542 -----SVPPTLADIPPPGPPGARLMSPRRPHTP-AERVTVRPLEDRPIVEVPPSNSPHRL 595
Query: 178 ATY 180
+Y
Sbjct: 596 RSY 598
>sp|Q7Z4S6|KI21A_HUMAN Kinesin-like protein KIF21A OS=Homo sapiens GN=KIF21A PE=1 SV=2
Length = 1674
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 39 ITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTV 98
I +L+K+ R D + R L ++ +++LR R+ + + L+ + + V
Sbjct: 795 IAQLKKDQRKRDHQLRLLEAQKRNQEVVLR-RKTEEVTALRRQVRPMSDKVAGKVTRKLS 853
Query: 99 SASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 157
S+ T S A++ T A G ++ + ++ P P + G + K GL GR
Sbjct: 854 SSDAPAQDTGSSAAAVETDASRTGAQQKMRIPVARVQALPTPATNGNRKKYQRKGLTGR 912
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,517,619
Number of Sequences: 539616
Number of extensions: 8592329
Number of successful extensions: 35581
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 608
Number of HSP's that attempted gapping in prelim test: 32592
Number of HSP's gapped (non-prelim): 3251
length of query: 398
length of database: 191,569,459
effective HSP length: 120
effective length of query: 278
effective length of database: 126,815,539
effective search space: 35254719842
effective search space used: 35254719842
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)