Query 015911
Match_columns 398
No_of_seqs 116 out of 131
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 99.9 1E-25 3.5E-30 189.5 9.5 74 2-76 15-88 (102)
2 2fmm_E Protein EMSY; ENT domai 99.9 2.6E-24 8.8E-29 188.1 9.3 72 2-74 7-78 (133)
3 2equ_A PHD finger protein 20-l 97.3 0.00033 1.1E-08 55.7 5.8 54 180-236 8-61 (74)
4 2l8d_A Lamin-B receptor; DNA b 97.1 0.00041 1.4E-08 54.5 3.8 40 184-223 12-51 (66)
5 2dig_A Lamin-B receptor; tudor 97.0 0.00042 1.4E-08 54.7 3.6 40 184-223 15-54 (68)
6 1mhn_A SurviVal motor neuron p 96.7 0.0016 5.6E-08 48.6 4.5 54 184-237 6-59 (59)
7 4a4f_A SurviVal of motor neuro 96.5 0.0036 1.2E-07 47.6 5.2 54 179-232 6-59 (64)
8 3p8d_A Medulloblastoma antigen 96.3 0.0038 1.3E-07 49.0 4.2 41 181-223 6-46 (67)
9 1g5v_A SurviVal motor neuron p 96.2 0.005 1.7E-07 50.2 4.7 54 181-234 10-63 (88)
10 2g3r_A Tumor suppressor P53-bi 96.1 0.0023 7.9E-08 55.6 2.5 42 181-223 4-45 (123)
11 2ldm_A Uncharacterized protein 95.0 0.001 3.5E-08 54.0 0.0 49 183-234 8-56 (81)
12 3qii_A PHD finger protein 20; 96.0 0.0056 1.9E-07 50.2 4.2 41 181-223 21-61 (85)
13 2d9t_A Tudor domain-containing 96.0 0.014 4.7E-07 46.1 6.3 57 181-237 9-65 (78)
14 3pnw_C Tudor domain-containing 95.7 0.0097 3.3E-07 47.1 4.1 57 181-237 17-73 (77)
15 3s6w_A Tudor domain-containing 95.3 0.017 5.8E-07 42.1 4.0 39 184-222 4-43 (54)
16 2eqj_A Metal-response element- 95.2 0.011 3.7E-07 46.6 2.9 49 183-236 15-63 (66)
17 1ssf_A Transformation related 95.1 0.015 5.3E-07 52.3 4.1 42 181-223 8-49 (156)
18 2eqk_A Tudor domain-containing 92.5 0.091 3.1E-06 43.1 3.6 58 179-237 19-76 (85)
19 2diq_A Tudor and KH domain-con 90.9 0.68 2.3E-05 37.7 7.2 55 181-237 32-87 (110)
20 2m0o_A PHD finger protein 1; t 90.6 0.9 3.1E-05 36.8 7.3 51 181-236 26-76 (79)
21 3fdr_A Tudor and KH domain-con 90.4 0.31 1.1E-05 38.6 4.6 54 181-236 27-81 (94)
22 4hcz_A PHD finger protein 1; p 89.4 0.26 8.8E-06 38.0 3.2 49 183-236 5-53 (58)
23 2eko_A Histone acetyltransfera 86.9 1.1 3.8E-05 36.5 5.7 64 181-245 9-77 (87)
24 2e5q_A PHD finger protein 19; 84.5 0.88 3E-05 35.5 3.7 51 183-238 9-59 (63)
25 2wac_A CG7008-PA; unknown func 84.3 0.93 3.2E-05 39.9 4.3 54 181-237 51-105 (218)
26 3ntk_A Maternal protein tudor; 83.4 0.51 1.7E-05 41.2 2.2 51 182-236 48-99 (169)
27 2xk0_A Polycomb protein PCL; t 81.4 2.7 9.1E-05 33.4 5.4 40 181-223 15-54 (69)
28 2e5p_A Protein PHF1, PHD finge 75.9 1.6 5.6E-05 34.5 2.7 48 182-234 10-57 (68)
29 2rnz_A Histone acetyltransfera 74.8 8.7 0.0003 31.7 6.9 58 183-243 27-87 (94)
30 4b9w_A TDRD1, tudor domain-con 74.1 2.8 9.5E-05 37.3 4.1 55 182-237 66-120 (201)
31 4b9x_A TDRD1, tudor domain-con 70.9 3 0.0001 37.7 3.7 55 182-237 66-120 (226)
32 2eqm_A PHD finger protein 20-l 67.5 9.5 0.00033 30.7 5.5 48 183-232 21-68 (88)
33 2qqr_A JMJC domain-containing 65.6 2.8 9.5E-05 36.1 2.1 48 183-240 7-54 (118)
34 3ask_A E3 ubiquitin-protein li 63.3 6.7 0.00023 36.9 4.4 60 184-243 5-75 (226)
35 2hqx_A P100 CO-activator tudor 62.1 7.1 0.00024 35.3 4.3 54 181-237 65-119 (246)
36 2xdp_A Lysine-specific demethy 61.2 3.1 0.00011 36.0 1.6 47 183-239 8-54 (123)
37 1wgs_A MYST histone acetyltran 60.5 7.8 0.00027 33.4 4.0 51 182-234 13-67 (133)
38 3h8z_A FragIle X mental retard 60.4 4.8 0.00017 34.8 2.7 50 181-234 60-114 (128)
39 2ro0_A Histone acetyltransfera 58.4 7.6 0.00026 31.8 3.4 58 183-243 25-85 (92)
40 3sd4_A PHD finger protein 20; 53.0 13 0.00045 28.2 3.7 47 183-231 14-60 (69)
41 3dlm_A Histone-lysine N-methyl 48.7 10 0.00036 35.6 3.0 43 181-223 68-114 (213)
42 1qsd_A Protein (beta-tubulin b 48.1 28 0.00095 29.1 5.3 37 314-350 31-70 (106)
43 1b34_A Protein (small nuclear 47.8 15 0.0005 30.9 3.6 33 180-213 7-39 (119)
44 3bdl_A Staphylococcal nuclease 44.0 18 0.00062 37.1 4.2 54 181-237 411-465 (570)
45 4e9k_A Hypothetical protein; P 43.9 10 0.00034 36.3 2.1 39 195-234 167-206 (241)
46 2lcc_A AT-rich interactive dom 43.7 8.3 0.00028 30.4 1.3 51 183-234 7-61 (76)
47 2guz_B Mitochondrial import in 43.5 21 0.0007 27.3 3.5 31 308-338 22-59 (65)
48 3mxz_A Tubulin-specific chaper 40.4 42 0.0014 28.5 5.3 36 315-350 36-73 (116)
49 2f5k_A MORF-related gene 15 is 40.4 21 0.00073 29.7 3.4 47 183-232 24-72 (102)
50 2l2l_A Transcriptional repress 40.4 20 0.00068 26.0 2.7 15 34-48 5-19 (43)
51 1y96_A Gemin6, SIP2, GEM-assoc 39.3 11 0.00037 30.8 1.4 38 178-216 10-47 (86)
52 2cp9_A EF-TS, EF-TSMT, elongat 38.8 20 0.00067 27.8 2.7 39 307-351 9-47 (64)
53 1h7c_A Tubulin-specific chaper 37.8 19 0.00065 30.1 2.7 41 314-354 34-83 (108)
54 2k48_A Nucleoprotein; viral pr 37.6 25 0.00087 29.9 3.4 30 325-354 34-63 (107)
55 2ic6_A Nucleocapsid protein; h 36.4 26 0.00088 28.3 3.1 29 325-353 4-32 (78)
56 1ub1_A MECP2, attachment regio 36.4 45 0.0015 29.2 4.9 42 234-282 88-130 (133)
57 3m9p_A MALE-specific lethal 3 36.1 26 0.00087 29.8 3.2 51 178-230 16-77 (110)
58 3gpv_A Transcriptional regulat 32.2 37 0.0013 28.9 3.7 46 306-351 71-116 (148)
59 1q06_A Transcriptional regulat 31.7 40 0.0014 28.2 3.8 44 307-350 56-99 (135)
60 2ic9_A Nucleocapsid protein; h 30.9 33 0.0011 28.7 3.0 29 325-353 4-32 (96)
61 4fi5_A Nucleoprotein; structur 29.5 33 0.0011 29.4 2.9 33 321-353 17-49 (113)
62 3rpp_A Glutathione S-transfera 28.7 1.5E+02 0.005 26.5 7.2 61 12-74 113-173 (234)
63 1r4w_A Glutathione S-transfera 28.7 1.4E+02 0.0049 25.9 7.0 58 15-74 116-173 (226)
64 1tr8_A Conserved protein (MTH1 26.9 20 0.00067 29.8 1.0 22 328-349 80-101 (102)
65 3h8z_A FragIle X mental retard 26.7 43 0.0015 28.9 3.1 24 194-219 13-36 (128)
66 2ou3_A Tellurite resistance pr 26.4 2.4E+02 0.0083 23.8 7.9 55 16-71 97-151 (161)
67 3gp4_A Transcriptional regulat 25.8 48 0.0016 28.1 3.3 46 306-351 57-102 (142)
68 3mea_A SAGA-associated factor 25.5 72 0.0025 29.0 4.5 40 183-222 118-158 (180)
69 3ih6_A Putative zinc protease; 24.5 93 0.0032 25.8 4.8 33 307-339 97-132 (197)
70 3r4i_A Citrate lyase; TIM beta 23.9 52 0.0018 31.9 3.5 31 304-338 253-283 (339)
71 3uul_A Utrophin; spectrin repe 23.9 73 0.0025 24.5 3.8 31 309-339 16-46 (118)
72 2vc8_A Enhancer of mRNA-decapp 23.7 70 0.0024 26.1 3.6 37 180-216 4-40 (84)
73 1q08_A Zn(II)-responsive regul 23.6 77 0.0026 24.4 3.9 42 310-351 18-60 (99)
74 3db3_A E3 ubiquitin-protein li 23.4 98 0.0033 28.0 4.9 64 184-247 13-96 (161)
75 2bud_A Males-absent on the fir 21.4 1.5E+02 0.0051 24.4 5.3 52 181-234 14-70 (92)
76 2q22_A Uncharacterized protein 21.0 59 0.002 28.5 3.0 34 321-354 5-51 (139)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=99.92 E-value=1e-25 Score=189.52 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=70.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHHhc
Q 015911 2 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS 76 (398)
Q Consensus 2 ~~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~~g 76 (398)
..|++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||+|+.+.
T Consensus 15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 368999999999999999999999996 59999999999999999999999999999999999999999998765
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=99.90 E-value=2.6e-24 Score=188.09 Aligned_cols=72 Identities=29% Similarity=0.443 Sum_probs=68.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHH
Q 015911 2 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRK 74 (398)
Q Consensus 2 ~~d~~~~Ih~LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~ 74 (398)
..|++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||+++.
T Consensus 7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~ 78 (133)
T 2fmm_E 7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMS 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 368999999999999999999999996 599999999999999999999999999999999999999999874
No 3
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.00033 Score=55.66 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=46.3
Q ss_pred cCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236 (398)
Q Consensus 180 ~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP 236 (398)
..--||-+|..+|. |+.||+|+|+..+.. +...++|++. -.|+-...+|+-|++
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~ 61 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence 45678999999999 999999999999875 8899999999 667777888877755
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.05 E-value=0.00041 Score=54.54 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=37.3
Q ss_pred ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
||-.|.-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e 51 (66)
T 2l8d_A 12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL 51 (66)
T ss_dssp SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 6779999999999999999999999999999999998775
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.02 E-value=0.00042 Score=54.75 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=37.1
Q ss_pred ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
||-.|.-|||-|+.||+|.||+++..+-.+.+.|-.+|.+
T Consensus 15 vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e 54 (68)
T 2dig_A 15 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL 54 (68)
T ss_dssp SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred cCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 6779999999999999999999999999999999997775
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.72 E-value=0.0016 Score=48.59 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=42.3
Q ss_pred ccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
+|-.+..+|.+|+.||.|+|++.+...+...+.|.+---.|+-..-+|+.+++|
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 577899999999999999999998877889999977444455555566666553
No 7
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.51 E-value=0.0036 Score=47.58 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=41.9
Q ss_pred ccCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccc
Q 015911 179 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 232 (398)
Q Consensus 179 ~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ 232 (398)
....-+|-.+..+|.+|+.||.|+|+..+...+...++|.+---.|+=.+-+|+
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence 346678999999999999999999999998888889999775444443333333
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.26 E-value=0.0038 Score=49.02 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=35.8
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
.=.||-+|..+| .|+.||+|+|+..+.. +.+.++|+.++.+
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e 46 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 46 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence 335889999999 9999999999999988 7899999996653
No 9
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.18 E-value=0.005 Score=50.23 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=42.4
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccC
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
..-||-.|..+|.+|+.||.|+|+..+...+...|+|.+---.|+-..-+|+-+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence 456788999999999999999999999877889999976555555444455444
No 10
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.12 E-value=0.0023 Score=55.60 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=37.9
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
.++||.+|..+|+++..||-++|+.+ ...+++.|.+|++...
T Consensus 4 ~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~ 45 (123)
T 2g3r_A 4 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 45 (123)
T ss_dssp -CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred ccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence 68999999999998889999999984 8889999999999984
No 11
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.05 E-value=0.001 Score=54.00 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=37.4
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
-+|-+|..+|. |+.||.|+|+..+. .+.+.++|++++ .|+-.+-+|+-+
T Consensus 8 kvGd~clAkws-Dg~wY~A~I~~v~~-~~~y~V~F~DGn-~E~V~~s~LrPl 56 (81)
T 2ldm_A 8 QINEQVLASWS-DSRFYPAKVTAVNK-DGTYTVKFYDGV-VQTVKHIHVKAF 56 (81)
Confidence 36889999999 99999999999985 468999998854 344444444444
No 12
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.01 E-value=0.0056 Score=50.20 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.6
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
.=.||-+|..+| .|..||.|.|+..+.. +.+.+.|+.++.+
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e 61 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 61 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence 557899999999 9999999999999987 7899999996653
No 13
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.00 E-value=0.014 Score=46.11 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=47.1
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
..-+|..+..+|.+|+.||.|+|+..+...+...|+|-+---.|+-..-+|+.|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 567888999999999999999999998877888888876555566667788888765
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.67 E-value=0.0097 Score=47.09 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=44.4
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
..-+|-.+..+|.+|+.||.|+|+..+...+...|.|-+---.|+=..-||+.|+++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 356788999999999999999999999877888888876555666667777777665
No 15
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=95.28 E-value=0.017 Score=42.13 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=31.0
Q ss_pred ccceeecccCCCCCceeeEeeecCCCCCceeeeecC-CCC
Q 015911 184 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTA 222 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~-~t~ 222 (398)
+|-.+..+|.+|+.||.|+|+..+...+...+.|.+ ++.
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~ 43 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY 43 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe
Confidence 577888999999999999999999877788888865 444
No 16
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=95.20 E-value=0.011 Score=46.60 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=43.2
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP 236 (398)
-+|.-|..+| .|.-||+|+|+.-|..+|.-.|.|.+++.- ||..++|.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence 4788899999 999999999999999999999999999885 777776644
No 17
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.14 E-value=0.015 Score=52.26 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=38.4
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
+++||.||..+|.+++.||-|+|+.+ ...+++.+.+|++...
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 49 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence 67999999999999999999999996 6778899999999985
No 18
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.53 E-value=0.091 Score=43.06 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred ccCccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 179 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 179 ~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
.+..-+|.-|..+.+++|.||-|.|..-.+.+--|-+.||.|+.+ +-.+-+|+.++|.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~-~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL-VVNVDCLRKLEEN 76 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE-EEETTTEEECCHH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE-EEEccccccCCHH
Confidence 446677888899999999999999999999999999999999984 4445566666543
No 19
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=90.87 E-value=0.68 Score=37.74 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=39.1
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe 237 (398)
..-+|.-+-.+|.+|+.||.|+|+..+.. +.-.+.| |.++. |+-.+-||+.+.++
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~ 87 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN-GDCPLKDLRALRSD 87 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE-EEECGGGCEECCHH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCe-EEEehHHhhcCcHH
Confidence 44678888999999999999999999874 4444555 44444 44555666666553
No 20
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=90.55 E-value=0.9 Score=36.82 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=43.1
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP 236 (398)
.=-+|.-|-.+| .|.-||-|+|+.-|...+...|.|++++.- |+..++|.+
T Consensus 26 ~f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~ 76 (79)
T 2m0o_A 26 RLWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 76 (79)
T ss_dssp CCCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred eeccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence 335788889999 567999999999999999999999999986 887777754
No 21
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=90.37 E-value=0.31 Score=38.64 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=37.9
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCC
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP 236 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisP 236 (398)
..-+|.-+-.+|++|+.||.|.|+.... ++.-.+.| |.|+. |+-..-||+.+.+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~-e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDN-GDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCE-EEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCe-EEEEHHHhhhcCH
Confidence 4568888999999999999999999975 34455555 44444 4444555666654
No 22
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=89.38 E-value=0.26 Score=37.98 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=41.3
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 236 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisP 236 (398)
-+|..|-.+|-| .-||-|+|..-|...+...+.+++++.- |+-+++|.+
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence 357789999976 8999999999999999999999999985 776666643
No 23
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.91 E-value=1.1 Score=36.46 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred CccccceeecccC---CCCCceeeEeeecCCCC--CceeeeecCCCCccchhhhccccCCCcCccccCCC
Q 015911 181 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPEDIKWEGDE 245 (398)
Q Consensus 181 ~~LIGrkV~~~WP---dDn~~yEa~ItdYn~~t--g~H~LvYD~~t~~EtwEWVdL~eisPedI~W~~e~ 245 (398)
.--||-||..+++ .++.||+|.|.+-+... -++-|-|.--+.. -.|||....|.-..++|...+
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~~~~~~~p~~~ 77 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRR-LDEWVTHERLDLKKIQFPKKE 77 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSC-CCEEECTTTBCGGGCCCCCCS
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcc-cccccCHhHcccccccCCCCC
Confidence 4568999999997 58899999999887654 3577777665553 357999988877777776533
No 24
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.54 E-value=0.88 Score=35.52 Aligned_cols=51 Identities=24% Similarity=0.449 Sum_probs=41.2
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCcC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED 238 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPed 238 (398)
-+|.-|-.+|- |.-||=|+|+.-|...+.-.+.|.+++.- ||..++|.+-.
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~ 59 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG 59 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence 46778889995 57999999999999888888888988875 77777765433
No 25
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=84.26 E-value=0.93 Score=39.86 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=39.9
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe 237 (398)
..-+|..+-.+|.+|+.||.|.|+.... +.-.+.| |.|+. |+..+-+|+.++++
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~-~~v~~~~l~~l~~~ 105 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNK-ETLPTNRLAALPPA 105 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCE-EEEEGGGEEECCGG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCe-EEEchHHcccCChh
Confidence 3457888999999999999999999876 5555665 44554 45666677777654
No 26
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=83.36 E-value=0.51 Score=41.21 Aligned_cols=51 Identities=18% Similarity=0.308 Sum_probs=37.0
Q ss_pred ccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCC
Q 015911 182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISP 236 (398)
Q Consensus 182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisP 236 (398)
.-+|.-+-.+|++|+.||.|.|+...+.. .-.+.| |.|+.+. .-+|+.+++
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~---v~~lr~l~~ 99 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV---TQQFRQLPE 99 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE---ESCEECCCH
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE---hhhhhccCH
Confidence 34677888999999999999999998854 445555 6666654 346666643
No 27
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=81.44 E-value=2.7 Score=33.36 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=32.0
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~ 223 (398)
.=-+|..|-.+|-| .-||-|+|++- .++.-.|.|++++.-
T Consensus 15 ~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~ 54 (69)
T 2xk0_A 15 TYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ 54 (69)
T ss_dssp CCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE
T ss_pred ccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce
Confidence 44578889999966 89999999774 467778888999875
No 28
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.93 E-value=1.6 Score=34.47 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=39.8
Q ss_pred ccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccC
Q 015911 182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
=-+|.-|-.+|-| .-||-|+|+.-|...+.-.+.|.+++.- ||..++|
T Consensus 10 f~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi 57 (68)
T 2e5p_A 10 LWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDI 57 (68)
T ss_dssp CCTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTE
T ss_pred cccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeecc
Confidence 3467788899966 8999999999999888888888888875 7766665
No 29
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=74.81 E-value=8.7 Score=31.73 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=42.8
Q ss_pred cccceeecccCCCCCceeeEeeecCCCC--CceeeeecCCCCccchhhhccccCCCc-CccccC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 243 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~t--g~H~LvYD~~t~~EtwEWVdL~eisPe-dI~W~~ 243 (398)
-||-+|..++ ++.||+|.|.+-.... -++-|-|.--+.. -.|||....|.-. +++|..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkR-lDEWV~~~RI~l~~~v~~p~ 87 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 87 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCST-TCEEEETTTBCSSSCCCCCC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHHHcccccCccCCC
Confidence 5899999997 8899999998765533 4567777665553 3569998888655 477764
No 30
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=74.13 E-value=2.8 Score=37.25 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=38.3
Q ss_pred ccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
+-+|.-+-.++++|+.||-|.|++......-.....|.|+.+ +-.+-+|+.+.++
T Consensus 66 ~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~-~v~~~~l~~l~~~ 120 (201)
T 4b9w_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (201)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEE-EECGGGEEECCGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEE-EEEHHHhccChHh
Confidence 446778889999999999999999876544445555777753 3334455555443
No 31
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=70.91 E-value=3 Score=37.74 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=38.3
Q ss_pred ccccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCc
Q 015911 182 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 237 (398)
Q Consensus 182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPe 237 (398)
.-+|.-+-.++++|+.||-|.|++..+...-.....|.|+.+ +-.+-+|+.+.++
T Consensus 66 ~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~-~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVE-EVTTDQLQAILPQ 120 (226)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEE-EEEGGGEECCCGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEE-EEEHHHhccChHH
Confidence 446778889999999999999999876544444455777653 3344456666544
No 32
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=67.49 E-value=9.5 Score=30.74 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=36.1
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccc
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 232 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~ 232 (398)
-||-||...-+. +.||+|+||.=+....+-.|-||=-+ +.-.|||+..
T Consensus 21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~-~~yDeWv~~d 68 (88)
T 2eqm_A 21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWS-HRYDEWIYWD 68 (88)
T ss_dssp CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSST-TTEEEEEETT
T ss_pred CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCC-CcccEEeeCC
Confidence 478888777655 57999999988877788899998654 3334688754
No 33
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=65.58 E-value=2.8 Score=36.06 Aligned_cols=48 Identities=23% Similarity=0.408 Sum_probs=36.2
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCcCcc
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 240 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPedI~ 240 (398)
-||.+|+.+|+ +.-||.|.|++=.. .--|.+.+|+|+-. .++-||||.
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~peDIv 54 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTT-ETFYEVNFDDGSFS--------DNLYPEDIV 54 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEE-EEEEEEEETTSCEE--------EEECGGGBC
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhhcc
Confidence 47889999998 67999999999533 34577777888753 356777774
No 34
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.33 E-value=6.7 Score=36.93 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccceeecccCCCCCceeeEeeecCCCC---------CceeeeecCCCCccchh--hhccccCCCcCccccC
Q 015911 184 IGRKVWTRWPEDNHFYEAVITDYNPNE---------GRHALVYDINTADETWE--WVNLKEISPEDIKWEG 243 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~ItdYn~~t---------g~H~LvYD~~t~~EtwE--WVdL~eisPedI~W~~ 243 (398)
||-.|..++.....||||.|.++-..+ -.+++.||.-..+++-+ -.+|+--+-..++|..
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~ 75 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 75 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGG
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCccc
Confidence 778899999999999999999998744 45668888876654332 2234434445667744
No 35
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=62.09 E-value=7.1 Score=35.28 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=37.8
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe 237 (398)
..-+|.-+-.+|. |+.||.|.|+...... .-.+.| |.|+.+ +-.+-+|+.++++
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~-~~~V~~vDyGn~~-~v~~~~lr~l~~~ 119 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESPA-KIHVFYIDYGNRE-VLPSTRLGTLSPA 119 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEETT-EEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCCC-eEEEEEEeCCCeE-EEeHHHhhcCCHh
Confidence 4457888889998 8999999999997643 444444 556653 4455677777654
No 36
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=61.16 E-value=3.1 Score=35.97 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=37.0
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhccccCCCcCc
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 239 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL~eisPedI 239 (398)
-||.+|+.+|.+ .-||.|.|++=-. .--+.+.||+|+-. .++-||||
T Consensus 8 ~vGq~V~ak~~n-gryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHRN-TRYYSCRVMAVTS-QTFYEVMFDDGSFS--------RDTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCCC-CCCCCCEEEEEEE-EEEEEEEETTSCEE--------EEECGGGB
T ss_pred ccCCEEEEECCC-CcEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhHc
Confidence 478899999985 8999999999775 45577788888763 35778887
No 37
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=60.51 E-value=7.8 Score=33.40 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=37.0
Q ss_pred ccccceeecccCCCCCceeeEeeecCC----CCCceeeeecCCCCccchhhhccccC
Q 015911 182 PLIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 182 ~LIGrkV~~~WPdDn~~yEa~ItdYn~----~tg~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
--||-+|..+|+ |+.||+|.|.+-.. ..-.+.|-|.--+.. -.|||....|
T Consensus 13 ~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR-~DEWV~~~ri 67 (133)
T 1wgs_A 13 VEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-LDEWVDKNRL 67 (133)
T ss_dssp CCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-CCEEECTTTS
T ss_pred cCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCC-ceeecChhhc
Confidence 358999999998 67999999988443 344677777744442 2369987776
No 38
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=60.44 E-value=4.8 Score=34.83 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=34.6
Q ss_pred CccccceeecccCCCC----CceeeEeeecCCCCCceeeeecCCCCccch-hhhccccC
Q 015911 181 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETW-EWVNLKEI 234 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn----~~yEa~ItdYn~~tg~H~LvYD~~t~~Etw-EWVdL~ei 234 (398)
.--+|-+|.+++-.++ .||.|+|+.... ..|.+.|+--.. +| |||.+..|
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~--~~~EiV~~~rl 114 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDA--TYNEIVTLERL 114 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC------CEEECGGGE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCC--CcceEEehhhe
Confidence 3458999999999877 899999999985 688888776332 33 47765444
No 39
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=58.39 E-value=7.6 Score=31.80 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=42.4
Q ss_pred cccceeecccCCCCCceeeEeeecCCCC--CceeeeecCCCCccchhhhccccCCCc-CccccC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 243 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~t--g~H~LvYD~~t~~EtwEWVdL~eisPe-dI~W~~ 243 (398)
-||-+|..++ ++.||+|.|.+-.... -++-|-|.--+.. -.|||....|.-. +++|..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkR-lDEWV~~~rl~l~~~v~~p~ 85 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKR-LDEWITTDRINLDKEVLYPK 85 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTT-SCEEEEGGGEETTSCEEECC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcc-cccccCHhHcccccCccCCC
Confidence 4889999997 8899999998766533 4677777655553 3479998888554 477764
No 40
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=53.00 E-value=13 Score=28.20 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=32.7
Q ss_pred cccceeecccCCCCCceeeEeeecCCCCCceeeeecCCCCccchhhhcc
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNL 231 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvYD~~t~~EtwEWVdL 231 (398)
-||-||...=+..+ ||.|+|++-+...++-.|.||--+ ..--+|++.
T Consensus 14 ~vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~-~~~D~W~~~ 60 (69)
T 3sd4_A 14 EVGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWN-HRYDEWFCW 60 (69)
T ss_dssp STTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSC-GGGCEEEET
T ss_pred CCCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCC-CCCCEEEcC
Confidence 36778877655544 699999997666688899998543 222358863
No 41
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=48.66 E-value=10 Score=35.55 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=34.2
Q ss_pred CccccceeecccCCCC--CceeeEeee--cCCCCCceeeeecCCCCc
Q 015911 181 NPLIGRKVWTRWPEDN--HFYEAVITD--YNPNEGRHALVYDINTAD 223 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn--~~yEa~Itd--Yn~~tg~H~LvYD~~t~~ 223 (398)
.=.||-||-.+|.+.+ .||-|+|.. +.-..-+++|.||++-+.
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~ 114 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYAS 114 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEE
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcc
Confidence 3468999999998875 899999975 222346999999999875
No 42
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=48.06 E-value=28 Score=29.08 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=26.5
Q ss_pred HHHH--hhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 015911 314 VEKV--FAANHP-DPTDVEKAKRVLKEQELALVNAIAKLE 350 (398)
Q Consensus 314 Verv--f~~~~p-Dp~eiEkAKk~LkehEqaL~dAIArL~ 350 (398)
-+|| |.+.++ |+.+|-+...+|+|.+.-|-|...||.
T Consensus 31 ~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~ 70 (106)
T 1qsd_A 31 EAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIR 70 (106)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455 556678 999999999999888876655544444
No 43
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=47.77 E-value=15 Score=30.89 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=26.1
Q ss_pred cCccccceeecccCCCCCceeeEeeecCCCCCce
Q 015911 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRH 213 (398)
Q Consensus 180 ~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H 213 (398)
+..++|++|.+.. -++.-|.+++..||.--..+
T Consensus 7 L~~~~gk~V~V~L-k~g~~~~G~L~~~D~~MNlv 39 (119)
T 1b34_A 7 LMKLSHETVTIEL-KNGTQVHGTITGVDVSMNTH 39 (119)
T ss_dssp HHTCTTCEEEEEE-TTCCEEEEEEEEECTTCCEE
T ss_pred HHHhCCCEEEEEE-cCCCEEEEEEEEEcccceEE
Confidence 3567889888755 56799999999999876644
No 44
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=43.97 E-value=18 Score=37.10 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=38.9
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCCCceeeee-cCCCCccchhhhccccCCCc
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTADETWEWVNLKEISPE 237 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~LvY-D~~t~~EtwEWVdL~eisPe 237 (398)
..-+|.-+-.+|. |+.||.|+|++.+.. +.-.+.| |.++. |+-.+-+|+.++++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~~-~~~~V~fvDyGn~-e~v~~~~Lr~l~~~ 465 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNR-EVLPSTRLGTLSPA 465 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCE-EEECGGGEECCCGG
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCe-EEEEHHHCccCCHH
Confidence 4668999999999 899999999999873 4444544 55554 44556667777644
No 45
>4e9k_A Hypothetical protein; PF14717 family protein, DUF4465, structural genomics, joint for structural genomics, JCSG; 2.31A {Bacteroides ovatus}
Probab=43.90 E-value=10 Score=36.30 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=28.7
Q ss_pred CCCceeeEeeecCCC-CCceeeeecCCCCccchhhhccccC
Q 015911 195 DNHFYEAVITDYNPN-EGRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 195 Dn~~yEa~ItdYn~~-tg~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
+..||.-+|+.||.. +-+|-|.=+ ...-.+|.||||+.+
T Consensus 167 ~gD~Fklti~Gyd~~g~Ve~yLAD~-~~iV~~W~~vDLSsL 206 (241)
T 4e9k_A 167 SNDSFKLTIYNYDKTMHVDCYLAEG-TNLLDQWKWVDLTSL 206 (241)
T ss_dssp TTCEEEEEEEETTSSCEEEEEEEET-TEECCSCEEEECGGG
T ss_pred CCCEEEEEEEEECCCCcEEEEEecC-CEEecceEEEccccc
Confidence 678999999999942 234555542 334589999999988
No 46
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=43.69 E-value=8.3 Score=30.35 Aligned_cols=51 Identities=27% Similarity=0.369 Sum_probs=37.1
Q ss_pred cccceeecccCCC--CCceeeEeeecCCCCC--ceeeeecCCCCccchhhhccccC
Q 015911 183 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 183 LIGrkV~~~WPdD--n~~yEa~ItdYn~~tg--~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
-||-+|..+|++. ..||+|.|.+-+...+ .+.|-|.--+.. -.|||....|
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr-~DEWV~~~ri 61 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVR-YDEWVKADRI 61 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCS-SCEEEEGGGE
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCC-ceEecChhhc
Confidence 4899999999953 7899999999876555 467777654442 2368875554
No 47
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=43.50 E-value=21 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhcCCCC-------hhhHHHHHHHHHHH
Q 015911 308 ETLIKEVEKVFAANHPD-------PTDVEKAKRVLKEQ 338 (398)
Q Consensus 308 ~slikeVervf~~~~pD-------p~eiEkAKk~Lkeh 338 (398)
+.+.+=-.|+|..+||| ..+|..||..|..+
T Consensus 22 ~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 22 DKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444456779999999 88999999998764
No 48
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=40.42 E-value=42 Score=28.47 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHH--hhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 015911 315 EKV--FAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 350 (398)
Q Consensus 315 erv--f~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~ 350 (398)
+|| |.+...|+.+|-+.+.+|+|.+.-|-|.-.||.
T Consensus 36 ~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~ 73 (116)
T 3mxz_A 36 AKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLE 73 (116)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455 556789999999999998888766555444443
No 49
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=40.41 E-value=21 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=34.0
Q ss_pred cccceeecccCCCCCceeeEeeecCCCC--CceeeeecCCCCccchhhhccc
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLK 232 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~t--g~H~LvYD~~t~~EtwEWVdL~ 232 (398)
-||-+|..+| ++.||+|.|.+-.... ..+.|-|.--+.. -.|||...
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR-~DEWV~~~ 72 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKN-WDEWVPES 72 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCGG-GCEEEEGG
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCC-ceeeccHh
Confidence 4899999999 6899999999866443 3677888765543 13588633
No 50
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=40.39 E-value=20 Score=25.99 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhCC
Q 015911 34 EKESLITELRKELRV 48 (398)
Q Consensus 34 ekE~LLTeLR~eL~I 48 (398)
|+|.+|.+||.||++
T Consensus 5 ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 5 ERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999984
No 51
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=39.32 E-value=11 Score=30.81 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=31.2
Q ss_pred cccCccccceeecccCCCCCceeeEeeecCCCCCceeee
Q 015911 178 ATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 216 (398)
Q Consensus 178 ~~~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~Lv 216 (398)
.-+.+||||+|++.- .|+..|+|++..|||.+--=.|+
T Consensus 10 ~el~~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~ 47 (86)
T 1y96_A 10 LEWQDYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLV 47 (86)
T ss_dssp HHHHHTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEE
T ss_pred HHHHhhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEe
Confidence 345789999999987 56789999999999987665555
No 52
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=38.76 E-value=20 Score=27.76 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=32.1
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015911 307 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 351 (398)
Q Consensus 307 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 351 (398)
|..+||||-...++ =|..+|+.|.|..-.|.+||.-|.+
T Consensus 9 t~~~Vk~LRe~TGa------g~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 9 SKELLMKLRRKTGY------SFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CCHHHHHHHHHHCC------CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC------CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45789998877652 4789999999999999999998863
No 53
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=37.80 E-value=19 Score=30.07 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=28.5
Q ss_pred HHHH--hhcCCCChhhHHHHHHHHHHHHHH-------HHHHHHHhcccCC
Q 015911 314 VEKV--FAANHPDPTDVEKAKRVLKEQELA-------LVNAIAKLEDASD 354 (398)
Q Consensus 314 Verv--f~~~~pDp~eiEkAKk~LkehEqa-------L~dAIArL~eaSD 354 (398)
-+|| |.+.++|+..|-+...+|+|.+.- |..|++.|.+.-.
T Consensus 34 ~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 34 EEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455 556688999999999999887654 5556666555443
No 54
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.65 E-value=25 Score=29.86 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 015911 325 PTDVEKAKRVLKEQELALVNAIAKLEDASD 354 (398)
Q Consensus 325 p~eiEkAKk~LkehEqaL~dAIArL~eaSD 354 (398)
|..||+--+-|+.||+.|+-|.-+|.+|-+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667789999999999999997643
No 55
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=36.45 E-value=26 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015911 325 PTDVEKAKRVLKEQELALVNAIAKLEDAS 353 (398)
Q Consensus 325 p~eiEkAKk~LkehEqaL~dAIArL~eaS 353 (398)
|..|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778889999999999999999764
No 56
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=36.39 E-value=45 Score=29.24 Aligned_cols=42 Identities=31% Similarity=0.522 Sum_probs=21.4
Q ss_pred CCCcCccccC-CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015911 234 ISPEDIKWEG-DEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK 282 (398)
Q Consensus 234 isPedI~W~~-e~pgi~~r~~~~g~g~g~~k~~~~~g~~~~~grgrg~~k 282 (398)
+++++|.|.- .....++|..+.+--.=. -.-++.|||||++|
T Consensus 88 ~~~e~FdF~~~gk~~~s~R~~r~~k~~k~-------~~~~~~~~~~~~~~ 130 (133)
T 1ub1_A 88 LDPNDFDFTVTGRGSPSRREQRPPKKAKS-------PKSPGSGRGRGRPK 130 (133)
T ss_dssp CCGGGCCCCCCCCSCSSCCCCCCCCCCCC-------CCCCCCCCCCCCCC
T ss_pred CCHhHCccccCCCCCCcccccCCCCCCCC-------CCCCCCCCCCCCCC
Confidence 5667776652 122234444443221111 12456789999888
No 57
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=36.12 E-value=26 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=33.9
Q ss_pred cccCccccceeecccCC---CCCceeeEeeecCCCC---C----ceeeeecCCCCccchh-hhc
Q 015911 178 ATYNPLIGRKVWTRWPE---DNHFYEAVITDYNPNE---G----RHALVYDINTADETWE-WVN 230 (398)
Q Consensus 178 ~~~~~LIGrkV~~~WPd---Dn~~yEa~ItdYn~~t---g----~H~LvYD~~t~~EtwE-WVd 230 (398)
..+.=-+|-+|-.++++ .+-||||.|.+-.... | .+.|-|.-= +.+|+ ||-
T Consensus 16 ~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GW--n~~wDEWV~ 77 (110)
T 3m9p_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGW--NRSWDRWAA 77 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTS--CGGGCEEEE
T ss_pred CCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCC--CcchhhccC
Confidence 33344588999999885 2679999999876532 2 578888532 33554 884
No 58
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.21 E-value=37 Score=28.94 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015911 306 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 351 (398)
Q Consensus 306 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 351 (398)
..+-=++|+.+++.....+...++..+.+|.+|.+.|...|++|..
T Consensus 71 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 116 (148)
T 3gpv_A 71 NTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEK 116 (148)
T ss_dssp TTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888887732223345677788888888888877777654
No 59
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.66 E-value=40 Score=28.21 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=27.9
Q ss_pred chhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 015911 307 TETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLE 350 (398)
Q Consensus 307 T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~ 350 (398)
.+-=++|+..++..........+..+.+|.+|.+.|...|++|.
T Consensus 56 ~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~ 99 (135)
T 1q06_A 56 VGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQ 99 (135)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447888888763221122345677888888887777776665
No 60
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=30.95 E-value=33 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015911 325 PTDVEKAKRVLKEQELALVNAIAKLEDAS 353 (398)
Q Consensus 325 p~eiEkAKk~LkehEqaL~dAIArL~eaS 353 (398)
|..|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~ 32 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAE 32 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777789999999999999999764
No 61
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.52 E-value=33 Score=29.41 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.4
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 015911 321 NHPDPTDVEKAKRVLKEQELALVNAIAKLEDAS 353 (398)
Q Consensus 321 ~~pDp~eiEkAKk~LkehEqaL~dAIArL~eaS 353 (398)
.-|..+.|++--+-|+.||+.|+-|.-+|.+|-
T Consensus 17 ~~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~ 49 (113)
T 4fi5_A 17 QGPGSMTMEELQREINAHEGQLVIARQKVRDAE 49 (113)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999764
No 62
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=28.73 E-value=1.5e+02 Score=26.49 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHH
Q 015911 12 VEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRK 74 (398)
Q Consensus 12 LE~eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~ 74 (398)
...+.+.++.+|++.+...| .....|.++=.+++++.++=..++..+.+++....|++-.+
T Consensus 113 ~~~~~~~al~~A~~~~g~di--~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~~ 173 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNEDI--TEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTE 173 (234)
T ss_dssp GHHHHHHHHHHHHHTSCCCC--SSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34567788888988975444 46678899999999999888888888888888888877443
No 63
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=28.68 E-value=1.4e+02 Score=25.93 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHHHHH
Q 015911 15 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRK 74 (398)
Q Consensus 15 eAY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe~r~ 74 (398)
+.+.++.+|++.+. ..+..+..|.++=.+++++.++=..++..+++++....|++..+
T Consensus 116 ~~~~alf~a~~~~~--~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~ 173 (226)
T 1r4w_A 116 KVSRELWMRIWSRD--EDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTG 173 (226)
T ss_dssp HHHHHHHHHHHTSC--CCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455666776654 34456677888989999998888888988988888788877554
No 64
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=26.88 E-value=20 Score=29.84 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015911 328 VEKAKRVLKEQELALVNAIAKL 349 (398)
Q Consensus 328 iEkAKk~LkehEqaL~dAIArL 349 (398)
-++|++.|+++--.|++||-.|
T Consensus 80 ~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 80 REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHh
Confidence 4799999999999999999887
No 65
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.74 E-value=43 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=19.7
Q ss_pred CCCCceeeEeeecCCCCCceeeeecC
Q 015911 194 EDNHFYEAVITDYNPNEGRHALVYDI 219 (398)
Q Consensus 194 dDn~~yEa~ItdYn~~tg~H~LvYD~ 219 (398)
++..||+|+|+++ .+..-.+.|+.
T Consensus 13 ~~G~~y~a~V~~v--~~d~~~V~f~n 36 (128)
T 3h8z_A 13 SNGAFYKGFVKDV--HEDSVTIFFEN 36 (128)
T ss_dssp TTSCEEEEEEEEE--CSSEEEEEETT
T ss_pred CCCCEEEEEEEEE--eCCcEEEEEcc
Confidence 5589999999998 46778889964
No 66
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=26.42 E-value=2.4e+02 Score=23.75 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHhCCChHHHHHHHHhhcchHHHHHHHH
Q 015911 16 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 71 (398)
Q Consensus 16 AY~svLrAF~AQS~~lSWekE~LLTeLR~eL~IS~eEH~~~l~~v~~De~I~~iRe 71 (398)
.....++.-+| -+.++-.-+.+|.++-..|+||..+-..++.++......++.|-
T Consensus 97 ~l~~l~~vA~A-DG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~ 151 (161)
T 2ou3_A 97 ILLSAIWVSAA-DGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYYEAALRQKRL 151 (161)
T ss_dssp HHHHHHHHHHT-TSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 36799999999999999999999999999999977766665554
No 67
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.77 E-value=48 Score=28.14 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=30.7
Q ss_pred cchhHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015911 306 HTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQELALVNAIAKLED 351 (398)
Q Consensus 306 ~T~slikeVervf~~~~pDp~eiEkAKk~LkehEqaL~dAIArL~e 351 (398)
..+-=++|+.+++....-....++..+.+|.+|.+.|...|++|..
T Consensus 57 ~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 57 RAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467787776522112235667788899998888888887764
No 68
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=25.54 E-value=72 Score=29.02 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=32.9
Q ss_pred cccceeecccCCCCCceeeEeeecCCC-CCceeeeecCCCC
Q 015911 183 LIGRKVWTRWPEDNHFYEAVITDYNPN-EGRHALVYDINTA 222 (398)
Q Consensus 183 LIGrkV~~~WPdDn~~yEa~ItdYn~~-tg~H~LvYD~~t~ 222 (398)
=.|.+|-.+||+--.||.|+|..=... ++.+.|.+|..+.
T Consensus 118 ~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~ 158 (180)
T 3mea_A 118 QKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSY 158 (180)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTS
T ss_pred CCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCc
Confidence 368899999999999999999986443 3788888887654
No 69
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=24.46 E-value=93 Score=25.79 Aligned_cols=33 Identities=6% Similarity=0.133 Sum_probs=23.3
Q ss_pred chhHHHHHHHHhh---cCCCChhhHHHHHHHHHHHH
Q 015911 307 TETLIKEVEKVFA---ANHPDPTDVEKAKRVLKEQE 339 (398)
Q Consensus 307 T~slikeVervf~---~~~pDp~eiEkAKk~LkehE 339 (398)
.+.+++.|.+.+. ....+..|+++||+.|+..-
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~ 132 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAW 132 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4555555555543 45789999999999887653
No 70
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=23.92 E-value=52 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=23.3
Q ss_pred eecchhHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 015911 304 ILHTETLIKEVEKVFAANHPDPTDVEKAKRVLKEQ 338 (398)
Q Consensus 304 i~~T~slikeVervf~~~~pDp~eiEkAKk~Lkeh 338 (398)
.+|-.. |.-|+++|+ |++.||++|+++|..-
T Consensus 253 ~IHP~Q-I~~in~~f~---Ps~~ei~~A~~il~a~ 283 (339)
T 3r4i_A 253 SIHPAQ-IEAIVAAFA---PRDEEITTATEILLAA 283 (339)
T ss_dssp ESSHHH-HHHHHHHTS---CCTHHHHHHHHHHHHH
T ss_pred eeCHHH-HHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 344433 455788887 9999999999999763
No 71
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.89 E-value=73 Score=24.53 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHHHHH
Q 015911 309 TLIKEVEKVFAANHPDPTDVEKAKRVLKEQE 339 (398)
Q Consensus 309 slikeVervf~~~~pDp~eiEkAKk~LkehE 339 (398)
+-|.|+|..+....|-+.+++.++..|+.|+
T Consensus 16 ~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~ 46 (118)
T 3uul_A 16 TWLLSAEDTFQEQDDISDDVEDVKEQFATHE 46 (118)
T ss_dssp HHHHHHHHHHHTSCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4478999998877777889999999999885
No 72
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=23.65 E-value=70 Score=26.14 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=31.5
Q ss_pred cCccccceeecccCCCCCceeeEeeecCCCCCceeee
Q 015911 180 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 216 (398)
Q Consensus 180 ~~~LIGrkV~~~WPdDn~~yEa~ItdYn~~tg~H~Lv 216 (398)
-+.|||..|..-==++-.-|+++|+++|+.+..=.|+
T Consensus 4 a~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~ 40 (84)
T 2vc8_A 4 ATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLT 40 (84)
T ss_dssp -CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEE
T ss_pred cccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEe
Confidence 3789999999999999999999999999987655554
No 73
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.62 E-value=77 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 015911 310 LIKEVEKVFAAN-HPDPTDVEKAKRVLKEQELALVNAIAKLED 351 (398)
Q Consensus 310 likeVervf~~~-~pDp~eiEkAKk~LkehEqaL~dAIArL~e 351 (398)
=++|+..++... .++...++..+.+|++|-+.|...|++|..
T Consensus 18 sL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 60 (99)
T 1q08_A 18 SLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS 60 (99)
T ss_dssp CHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777632 233224667888888888888888777653
No 74
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=23.42 E-value=98 Score=27.97 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=44.2
Q ss_pred ccceeecccCCCCCceeeEeee-cCC-----------------CCCceeeeecCCCCccchh--hhccccCCCcCccccC
Q 015911 184 IGRKVWTRWPEDNHFYEAVITD-YNP-----------------NEGRHALVYDINTADETWE--WVNLKEISPEDIKWEG 243 (398)
Q Consensus 184 IGrkV~~~WPdDn~~yEa~Itd-Yn~-----------------~tg~H~LvYD~~t~~EtwE--WVdL~eisPedI~W~~ 243 (398)
||--|..+=.+-..||||.|.. +-. +.-.++|.||.-.++.+-+ -.|++--+-.-|+|..
T Consensus 13 inelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpRARt~l~w~~ 92 (161)
T 3db3_A 13 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQD 92 (161)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECCCCCBCCGGG
T ss_pred ecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccceEEeccHHH
Confidence 4555667777789999999987 432 4467999999887765543 3445555667888865
Q ss_pred CCCC
Q 015911 244 DEPG 247 (398)
Q Consensus 244 e~pg 247 (398)
=.+|
T Consensus 93 L~vG 96 (161)
T 3db3_A 93 LEVG 96 (161)
T ss_dssp CCTT
T ss_pred CCcC
Confidence 4444
No 75
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=21.41 E-value=1.5e+02 Score=24.39 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=35.5
Q ss_pred CccccceeecccCCCCCceeeEeeecCCCC-----CceeeeecCCCCccchhhhccccC
Q 015911 181 NPLIGRKVWTRWPEDNHFYEAVITDYNPNE-----GRHALVYDINTADETWEWVNLKEI 234 (398)
Q Consensus 181 ~~LIGrkV~~~WPdDn~~yEa~ItdYn~~t-----g~H~LvYD~~t~~EtwEWVdL~ei 234 (398)
++-=|.+|..+|+ ++.||+|.|.+-.... -++-+-|.--+.. -.|||....|
T Consensus 14 ~~~~~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR-lDEWV~~~RL 70 (92)
T 2bud_A 14 SENPDKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR-LDGWVGRHRI 70 (92)
T ss_dssp TTCTTSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT-TCEEEETTTE
T ss_pred cCCCCCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc-cccccCHHHh
Confidence 3333779999997 6799999998754432 3677777655553 3568876554
No 76
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=21.05 E-value=59 Score=28.54 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.5
Q ss_pred CCCChhhHHHHHHHHH-------------HHHHHHHHHHHHhcccCC
Q 015911 321 NHPDPTDVEKAKRVLK-------------EQELALVNAIAKLEDASD 354 (398)
Q Consensus 321 ~~pDp~eiEkAKk~Lk-------------ehEqaL~dAIArL~eaSD 354 (398)
.|+-.++||.|.++|+ ++.+.|+.||..+...+|
T Consensus 5 ~~~~~~~i~~a~~~L~d~~~l~~ap~ls~~~r~~Lr~aL~~~~~~sd 51 (139)
T 2q22_A 5 PNHPNLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSD 51 (139)
T ss_dssp ----CCCHHHHHHHHHTTTTCSBCCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred cCCCCccHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHHHhhCC
Confidence 3455678888988887 478999999999998776
Done!