Query 015912
Match_columns 398
No_of_seqs 412 out of 2589
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03520 GldE gliding motilit 100.0 3.8E-44 8.3E-49 366.5 26.0 203 16-226 89-294 (408)
2 PRK11573 hypothetical protein; 100.0 2.6E-43 5.6E-48 360.8 25.5 205 14-226 79-294 (413)
3 COG1253 TlyC Hemolysins and re 100.0 8.4E-41 1.8E-45 344.0 23.9 202 18-226 101-311 (429)
4 COG4536 CorB Putative Mg2+ and 100.0 5.3E-40 1.2E-44 323.1 18.5 208 14-226 90-307 (423)
5 PRK15094 magnesium/cobalt effl 100.0 3.6E-28 7.8E-33 238.8 17.5 147 71-226 24-172 (292)
6 KOG2118 Predicted membrane pro 99.9 8.9E-28 1.9E-32 250.6 7.4 349 1-355 85-442 (498)
7 COG4535 CorC Putative Mg2+ and 99.9 6.6E-27 1.4E-31 218.5 11.6 180 66-340 19-200 (293)
8 TIGR00400 mgtE Mg2+ transporte 99.7 3.8E-17 8.1E-22 169.6 15.6 135 81-225 89-234 (449)
9 COG3448 CBS-domain-containing 99.7 3.2E-16 6.9E-21 151.2 18.1 137 81-225 202-354 (382)
10 COG2524 Predicted transcriptio 99.7 3.4E-17 7.3E-22 155.4 10.1 109 112-225 163-273 (294)
11 TIGR01302 IMP_dehydrog inosine 99.7 1.1E-15 2.3E-20 158.9 14.7 133 80-225 43-183 (450)
12 COG4109 Predicted transcriptio 99.6 1.4E-15 2.9E-20 149.8 12.0 114 108-225 170-288 (432)
13 COG2239 MgtE Mg/Co/Ni transpor 99.6 4.9E-14 1.1E-18 145.7 14.8 117 103-225 114-235 (451)
14 PRK05567 inosine 5'-monophosph 99.5 9.5E-14 2.1E-18 145.6 15.7 132 80-225 50-187 (486)
15 cd04603 CBS_pair_KefB_assoc Th 99.5 7.4E-14 1.6E-18 116.0 11.7 92 132-225 2-95 (111)
16 PRK10892 D-arabinose 5-phospha 99.5 4.7E-14 1E-18 140.1 11.7 105 119-225 200-308 (326)
17 cd04619 CBS_pair_6 The CBS dom 99.5 2E-13 4.2E-18 113.8 11.6 92 132-225 2-98 (114)
18 PF01595 DUF21: Domain of unkn 99.5 7.8E-14 1.7E-18 126.7 9.8 93 12-108 86-183 (183)
19 cd04605 CBS_pair_MET2_assoc Th 99.5 2E-13 4.4E-18 112.1 11.2 92 132-225 3-94 (110)
20 cd04641 CBS_pair_28 The CBS do 99.5 2.2E-13 4.7E-18 114.4 11.5 92 132-225 2-104 (120)
21 PRK11543 gutQ D-arabinose 5-ph 99.5 1.1E-13 2.4E-18 137.0 10.4 104 120-225 196-302 (321)
22 COG3620 Predicted transcriptio 99.5 1.8E-13 3.8E-18 121.9 10.5 119 100-225 39-167 (187)
23 cd04618 CBS_pair_5 The CBS dom 99.5 2.8E-13 6.1E-18 111.4 10.9 80 132-225 2-81 (98)
24 cd04626 CBS_pair_13 The CBS do 99.5 3E-13 6.5E-18 111.4 10.7 92 132-225 2-96 (111)
25 cd04623 CBS_pair_10 The CBS do 99.5 4.4E-13 9.4E-18 110.0 11.5 92 132-225 2-98 (113)
26 cd04596 CBS_pair_DRTGG_assoc T 99.5 4.2E-13 9.2E-18 110.4 11.4 90 132-225 3-92 (108)
27 cd04630 CBS_pair_17 The CBS do 99.5 4.7E-13 1E-17 111.2 11.7 93 132-225 2-99 (114)
28 cd04593 CBS_pair_EriC_assoc_ba 99.5 4.6E-13 9.9E-18 111.2 11.1 91 133-225 3-97 (115)
29 cd04590 CBS_pair_CorC_HlyC_ass 99.5 4.4E-13 9.6E-18 110.2 10.9 92 132-225 2-95 (111)
30 cd04600 CBS_pair_HPP_assoc Thi 99.5 6.7E-13 1.4E-17 111.3 11.6 92 132-225 3-108 (124)
31 cd04639 CBS_pair_26 The CBS do 99.5 6E-13 1.3E-17 109.5 10.9 92 132-225 2-95 (111)
32 cd04624 CBS_pair_11 The CBS do 99.5 6.2E-13 1.3E-17 109.6 10.9 92 132-225 2-96 (112)
33 cd04642 CBS_pair_29 The CBS do 99.4 8.3E-13 1.8E-17 112.0 11.4 92 132-225 2-110 (126)
34 cd04643 CBS_pair_30 The CBS do 99.4 1E-12 2.2E-17 108.7 11.2 90 132-225 2-100 (116)
35 cd04803 CBS_pair_15 The CBS do 99.4 1.2E-12 2.5E-17 109.5 11.6 92 132-225 2-106 (122)
36 cd04631 CBS_pair_18 The CBS do 99.4 9.7E-13 2.1E-17 110.5 11.0 93 132-225 2-109 (125)
37 cd04607 CBS_pair_NTP_transfera 99.4 1.3E-12 2.7E-17 108.2 11.5 91 133-225 4-97 (113)
38 cd04617 CBS_pair_4 The CBS dom 99.4 8.8E-13 1.9E-17 110.5 10.6 92 132-225 2-99 (118)
39 cd04621 CBS_pair_8 The CBS dom 99.4 1E-12 2.2E-17 113.9 11.1 92 132-225 2-120 (135)
40 cd04627 CBS_pair_14 The CBS do 99.4 8.5E-13 1.8E-17 111.2 10.3 93 132-225 2-107 (123)
41 PRK07807 inosine 5-monophospha 99.4 8.6E-13 1.9E-17 138.0 12.4 101 119-225 87-187 (479)
42 cd04599 CBS_pair_GGDEF_assoc2 99.4 1.3E-12 2.9E-17 106.1 10.7 89 132-225 2-90 (105)
43 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2.1E-12 4.6E-17 105.3 11.4 89 132-225 2-90 (106)
44 cd04635 CBS_pair_22 The CBS do 99.4 2.1E-12 4.5E-17 108.0 11.4 92 132-225 2-106 (122)
45 cd04801 CBS_pair_M50_like This 99.4 9.1E-13 2E-17 109.3 9.0 92 132-225 2-98 (114)
46 PRK01862 putative voltage-gate 99.4 9.6E-13 2.1E-17 140.6 11.6 104 118-225 444-551 (574)
47 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 2.2E-12 4.8E-17 105.7 11.2 91 132-225 2-95 (111)
48 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 2.5E-12 5.4E-17 105.0 11.1 91 132-225 3-93 (109)
49 cd04595 CBS_pair_DHH_polyA_Pol 99.4 2.4E-12 5.1E-17 105.9 11.0 91 132-225 3-95 (110)
50 cd04601 CBS_pair_IMPDH This cd 99.4 2.7E-12 5.8E-17 105.0 11.2 91 132-225 3-94 (110)
51 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 2.6E-12 5.7E-17 105.2 11.1 91 132-225 2-95 (111)
52 cd04636 CBS_pair_23 The CBS do 99.4 2.4E-12 5.2E-17 110.0 11.3 92 132-225 2-117 (132)
53 cd04629 CBS_pair_16 The CBS do 99.4 2E-12 4.3E-17 106.7 10.3 92 132-225 2-99 (114)
54 cd04640 CBS_pair_27 The CBS do 99.4 1.9E-12 4.2E-17 109.9 10.4 92 132-225 2-109 (126)
55 cd04588 CBS_pair_CAP-ED_DUF294 99.4 3.1E-12 6.7E-17 105.0 11.3 91 132-225 2-94 (110)
56 cd04589 CBS_pair_CAP-ED_DUF294 99.4 2.8E-12 6.1E-17 105.6 11.0 91 132-225 2-96 (111)
57 cd04608 CBS_pair_PALP_assoc Th 99.4 5.7E-13 1.2E-17 113.7 7.0 81 132-214 3-87 (124)
58 cd04610 CBS_pair_ParBc_assoc T 99.4 4.1E-12 8.9E-17 103.6 11.4 89 132-225 3-91 (107)
59 cd04615 CBS_pair_2 The CBS dom 99.4 3.6E-12 7.8E-17 105.1 11.1 91 133-225 3-97 (113)
60 cd04606 CBS_pair_Mg_transporte 99.4 2.4E-12 5.3E-17 106.0 10.1 86 136-225 2-92 (109)
61 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.7E-12 8E-17 104.6 10.9 92 132-225 2-97 (114)
62 cd04632 CBS_pair_19 The CBS do 99.4 3.8E-12 8.3E-17 107.8 11.1 91 132-224 2-109 (128)
63 cd04585 CBS_pair_ACT_assoc2 Th 99.4 4.1E-12 8.8E-17 105.4 11.0 91 132-225 2-106 (122)
64 cd04586 CBS_pair_BON_assoc Thi 99.4 2.8E-12 6E-17 110.0 10.3 92 132-225 3-120 (135)
65 cd04800 CBS_pair_CAP-ED_DUF294 99.4 4.3E-12 9.4E-17 104.3 11.0 91 132-225 2-96 (111)
66 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.9E-12 1.1E-16 103.7 11.1 86 134-225 4-89 (104)
67 cd04602 CBS_pair_IMPDH_2 This 99.4 4.3E-12 9.3E-17 105.5 10.7 92 132-225 3-98 (114)
68 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 3.9E-12 8.4E-17 104.7 10.4 92 132-225 3-98 (114)
69 cd04620 CBS_pair_7 The CBS dom 99.4 5.8E-12 1.3E-16 104.4 10.8 91 132-225 2-99 (115)
70 PLN02274 inosine-5'-monophosph 99.4 7.5E-12 1.6E-16 131.8 14.4 136 81-225 64-204 (505)
71 cd04591 CBS_pair_EriC_assoc_eu 99.4 5.5E-12 1.2E-16 104.4 10.6 87 131-225 2-90 (105)
72 cd04614 CBS_pair_1 The CBS dom 99.4 7.6E-12 1.6E-16 102.1 11.1 79 132-225 2-80 (96)
73 cd04638 CBS_pair_25 The CBS do 99.4 1E-11 2.3E-16 101.6 11.9 90 132-225 2-91 (106)
74 cd04587 CBS_pair_CAP-ED_DUF294 99.4 5.6E-12 1.2E-16 103.8 10.3 91 132-225 2-97 (113)
75 cd04637 CBS_pair_24 The CBS do 99.3 6.3E-12 1.4E-16 105.2 10.3 91 132-225 2-106 (122)
76 PRK07107 inosine 5-monophospha 99.3 4.1E-12 8.9E-17 133.6 11.0 112 106-225 87-202 (502)
77 TIGR01137 cysta_beta cystathio 99.3 5.8E-12 1.2E-16 130.5 11.4 101 118-225 332-436 (454)
78 cd04625 CBS_pair_12 The CBS do 99.3 1.1E-11 2.4E-16 102.0 10.9 91 132-225 2-97 (112)
79 cd04584 CBS_pair_ACT_assoc Thi 99.3 1.2E-11 2.7E-16 103.0 11.3 92 132-225 2-106 (121)
80 cd04802 CBS_pair_3 The CBS dom 99.3 1.2E-11 2.5E-16 101.9 10.9 91 132-225 2-97 (112)
81 cd04622 CBS_pair_9 The CBS dom 99.3 1.5E-11 3.3E-16 101.2 11.4 91 132-225 2-97 (113)
82 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.3E-11 5.1E-16 127.1 15.4 99 120-225 87-185 (475)
83 cd04609 CBS_pair_PALP_assoc2 T 99.3 2E-11 4.2E-16 99.7 10.7 89 132-225 2-94 (110)
84 PTZ00314 inosine-5'-monophosph 99.3 1.6E-11 3.5E-16 129.1 12.7 136 81-225 60-200 (495)
85 cd04633 CBS_pair_20 The CBS do 99.3 1.8E-11 3.9E-16 102.2 10.2 91 132-225 2-106 (121)
86 cd02205 CBS_pair The CBS domai 99.3 3.8E-11 8.1E-16 96.8 11.1 92 132-225 2-97 (113)
87 COG0517 FOG: CBS domain [Gener 99.3 3.2E-11 7E-16 99.6 10.9 97 124-225 2-102 (117)
88 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.5E-11 3.4E-16 118.3 9.4 102 121-225 155-259 (268)
89 cd04634 CBS_pair_21 The CBS do 99.2 4.4E-11 9.6E-16 104.3 10.6 91 132-225 2-128 (143)
90 cd04598 CBS_pair_GGDEF_assoc T 99.2 5.3E-11 1.2E-15 99.0 9.7 91 132-225 2-103 (119)
91 COG2905 Predicted signal-trans 99.2 4.5E-11 9.8E-16 124.3 8.2 105 117-225 145-253 (610)
92 cd04592 CBS_pair_EriC_assoc_eu 99.1 4.3E-10 9.3E-15 98.0 8.6 92 132-225 2-117 (133)
93 PRK14869 putative manganese-de 99.0 2.3E-09 5E-14 114.0 12.7 56 120-179 67-122 (546)
94 PF00571 CBS: CBS domain CBS d 98.8 2.3E-08 4.9E-13 73.6 7.2 38 188-225 1-38 (57)
95 PF00571 CBS: CBS domain CBS d 98.6 2.9E-08 6.4E-13 73.0 4.2 55 123-181 1-55 (57)
96 KOG1764 5'-AMP-activated prote 98.6 2.6E-07 5.6E-12 94.5 11.0 92 132-225 238-341 (381)
97 PRK10070 glycine betaine trans 98.5 8E-07 1.7E-11 91.5 12.4 101 121-225 274-375 (400)
98 TIGR01186 proV glycine betaine 98.4 3.9E-06 8.5E-11 85.4 13.1 88 134-225 253-340 (363)
99 KOG0474 Cl- channel CLC-7 and 98.4 5.8E-07 1.3E-11 94.9 6.5 105 118-225 579-729 (762)
100 KOG2550 IMP dehydrogenase/GMP 98.3 1.4E-06 3.1E-11 88.1 8.3 137 80-225 71-210 (503)
101 TIGR00400 mgtE Mg2+ transporte 98.1 1.9E-06 4.2E-11 89.9 3.4 99 119-223 193-291 (449)
102 cd04603 CBS_pair_KefB_assoc Th 97.9 1.4E-05 3E-10 66.0 5.1 56 120-179 55-110 (111)
103 cd04604 CBS_pair_KpsF_GutQ_ass 97.9 2.9E-05 6.3E-10 63.5 5.7 59 117-179 55-113 (114)
104 cd04597 CBS_pair_DRTGG_assoc2 97.8 4.6E-05 1E-09 64.0 6.3 55 121-179 58-112 (113)
105 cd04801 CBS_pair_M50_like This 97.8 3.3E-05 7.3E-10 63.6 5.1 58 120-179 56-113 (114)
106 cd04597 CBS_pair_DRTGG_assoc2 97.8 5.6E-05 1.2E-09 63.5 6.3 40 186-225 58-97 (113)
107 COG2524 Predicted transcriptio 97.7 4.6E-05 1E-09 73.4 5.9 41 185-225 171-211 (294)
108 cd04617 CBS_pair_4 The CBS dom 97.7 5E-05 1.1E-09 63.3 5.3 61 118-179 55-117 (118)
109 cd04619 CBS_pair_6 The CBS dom 97.7 4.8E-05 1E-09 63.0 5.1 57 119-179 57-113 (114)
110 PRK07107 inosine 5-monophospha 97.7 9.5E-05 2.1E-09 78.4 8.5 101 118-222 158-260 (502)
111 PRK14869 putative manganese-de 97.7 3.7E-05 8.1E-10 82.0 5.3 104 119-225 244-376 (546)
112 KOG0475 Cl- channel CLC-3 and 97.7 0.00014 3E-09 77.4 9.3 103 122-225 544-678 (696)
113 cd04607 CBS_pair_NTP_transfera 97.7 7.5E-05 1.6E-09 61.4 5.5 56 120-179 57-112 (113)
114 cd04620 CBS_pair_7 The CBS dom 97.6 9.6E-05 2.1E-09 60.8 5.6 57 119-179 56-114 (115)
115 cd04618 CBS_pair_5 The CBS dom 97.6 0.0001 2.3E-09 60.2 5.0 46 133-179 52-97 (98)
116 cd04585 CBS_pair_ACT_assoc2 Th 97.6 0.00011 2.3E-09 60.6 5.1 58 118-179 64-121 (122)
117 cd04587 CBS_pair_CAP-ED_DUF294 97.5 0.00013 2.9E-09 59.5 5.2 55 121-179 58-112 (113)
118 cd04600 CBS_pair_HPP_assoc Thi 97.5 0.00013 2.8E-09 60.7 5.1 59 118-180 66-124 (124)
119 TIGR03520 GldE gliding motilit 97.5 0.0011 2.3E-08 68.7 12.7 41 185-225 190-232 (408)
120 cd04582 CBS_pair_ABC_OpuCA_ass 97.5 0.0002 4.4E-09 57.9 5.9 54 122-179 52-105 (106)
121 cd04625 CBS_pair_12 The CBS do 97.5 0.00021 4.6E-09 58.3 6.0 55 120-179 57-111 (112)
122 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00016 3.4E-09 58.5 5.2 56 120-179 51-106 (107)
123 KOG1764 5'-AMP-activated prote 97.5 0.00044 9.5E-09 71.0 9.5 138 82-225 116-268 (381)
124 COG3448 CBS-domain-containing 97.5 9.8E-05 2.1E-09 72.5 4.5 41 185-225 244-284 (382)
125 PRK07807 inosine 5-monophospha 97.5 0.00024 5.1E-09 75.0 7.6 96 121-225 148-247 (479)
126 cd04640 CBS_pair_27 The CBS do 97.5 9.1E-05 2E-09 62.5 3.5 60 119-179 62-125 (126)
127 cd04630 CBS_pair_17 The CBS do 97.5 0.00016 3.4E-09 59.7 4.8 56 119-179 58-113 (114)
128 cd04596 CBS_pair_DRTGG_assoc T 97.5 0.00018 3.8E-09 58.8 5.0 57 119-179 51-107 (108)
129 cd04627 CBS_pair_14 The CBS do 97.5 0.00019 4.2E-09 60.1 5.3 52 123-178 70-121 (123)
130 COG3620 Predicted transcriptio 97.5 0.00011 2.4E-09 66.3 3.7 40 186-225 65-104 (187)
131 PRK10892 D-arabinose 5-phospha 97.4 0.00015 3.4E-09 72.1 5.1 58 118-180 266-323 (326)
132 cd04613 CBS_pair_SpoIVFB_EriC_ 97.4 0.00019 4.1E-09 58.5 4.7 57 120-179 57-113 (114)
133 PLN02274 inosine-5'-monophosph 97.4 0.00048 1E-08 73.2 8.8 116 102-225 148-268 (505)
134 cd04622 CBS_pair_9 The CBS dom 97.4 0.00024 5.2E-09 58.0 5.1 56 120-179 57-112 (113)
135 cd04615 CBS_pair_2 The CBS dom 97.4 0.00025 5.4E-09 58.0 5.2 57 119-179 56-112 (113)
136 PRK11543 gutQ D-arabinose 5-ph 97.4 0.00024 5.1E-09 70.5 6.0 58 119-180 261-318 (321)
137 cd04623 CBS_pair_10 The CBS do 97.4 0.00025 5.3E-09 57.7 4.9 55 120-179 58-112 (113)
138 cd04631 CBS_pair_18 The CBS do 97.4 0.00022 4.9E-09 59.4 4.8 57 119-179 68-124 (125)
139 PRK05567 inosine 5'-monophosph 97.4 0.00043 9.3E-09 73.1 7.9 100 120-225 146-248 (486)
140 TIGR01303 IMP_DH_rel_1 IMP deh 97.4 0.00053 1.2E-08 72.3 8.5 97 121-225 146-245 (475)
141 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.0003 6.5E-09 57.9 5.4 57 121-180 58-115 (115)
142 smart00116 CBS Domain in cysta 97.4 0.00054 1.2E-08 46.4 5.8 30 196-225 2-31 (49)
143 cd04626 CBS_pair_13 The CBS do 97.4 0.00029 6.3E-09 57.5 5.1 55 120-179 56-110 (111)
144 cd04595 CBS_pair_DHH_polyA_Pol 97.4 0.0003 6.5E-09 57.4 5.2 56 119-179 54-109 (110)
145 cd04586 CBS_pair_BON_assoc Thi 97.4 0.00028 6.1E-09 60.1 5.1 57 118-179 78-134 (135)
146 COG0517 FOG: CBS domain [Gener 97.4 0.00049 1.1E-08 56.4 6.4 53 122-178 63-117 (117)
147 cd04612 CBS_pair_SpoIVFB_EriC_ 97.4 0.00036 7.9E-09 56.6 5.5 55 121-179 56-110 (111)
148 cd04602 CBS_pair_IMPDH_2 This 97.3 0.00029 6.3E-09 58.2 4.8 57 121-179 57-113 (114)
149 cd04601 CBS_pair_IMPDH This cd 97.3 0.00039 8.5E-09 56.3 5.4 56 120-179 53-109 (110)
150 cd04606 CBS_pair_Mg_transporte 97.3 0.00035 7.5E-09 57.1 5.1 57 120-180 52-108 (109)
151 cd04635 CBS_pair_22 The CBS do 97.3 0.00033 7.2E-09 58.1 4.9 57 119-179 65-121 (122)
152 PTZ00314 inosine-5'-monophosph 97.3 0.00067 1.4E-08 71.9 8.3 61 119-181 157-217 (495)
153 cd04621 CBS_pair_8 The CBS dom 97.3 0.00033 7.2E-09 60.5 5.0 56 119-179 79-134 (135)
154 cd04803 CBS_pair_15 The CBS do 97.3 0.00039 8.4E-09 57.7 5.2 58 118-179 64-121 (122)
155 cd04641 CBS_pair_28 The CBS do 97.3 0.00043 9.4E-09 57.6 5.4 52 124-179 68-119 (120)
156 cd04583 CBS_pair_ABC_OpuCA_ass 97.3 0.00043 9.4E-09 56.0 5.2 55 121-179 54-108 (109)
157 cd04611 CBS_pair_PAS_GGDEF_DUF 97.3 0.00046 1E-08 56.0 5.3 57 119-179 54-110 (111)
158 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.00042 9.2E-09 56.6 5.0 56 119-179 55-110 (111)
159 cd04633 CBS_pair_20 The CBS do 97.3 0.00034 7.4E-09 57.9 4.4 57 118-179 64-120 (121)
160 cd04802 CBS_pair_3 The CBS dom 97.3 0.00044 9.5E-09 56.5 5.0 56 119-179 56-111 (112)
161 cd04636 CBS_pair_23 The CBS do 97.2 0.00038 8.3E-09 59.1 4.7 56 119-179 76-131 (132)
162 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.0005 1.1E-08 55.9 5.1 54 121-179 50-103 (104)
163 cd04629 CBS_pair_16 The CBS do 97.2 0.00041 8.8E-09 56.7 4.6 56 119-179 58-113 (114)
164 cd04643 CBS_pair_30 The CBS do 97.2 0.00034 7.3E-09 57.4 4.0 56 119-180 61-116 (116)
165 cd04639 CBS_pair_26 The CBS do 97.2 0.00046 1E-08 56.2 4.7 55 121-179 56-110 (111)
166 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.00043 9.4E-09 57.2 4.6 57 118-179 64-120 (121)
167 cd04599 CBS_pair_GGDEF_assoc2 97.2 0.00049 1.1E-08 55.4 4.7 55 120-179 50-104 (105)
168 cd04614 CBS_pair_1 The CBS dom 97.2 0.00066 1.4E-08 55.0 5.1 46 133-180 51-96 (96)
169 cd04624 CBS_pair_11 The CBS do 97.2 0.00098 2.1E-08 54.3 6.0 56 120-179 56-111 (112)
170 cd04592 CBS_pair_EriC_assoc_eu 97.1 0.0015 3.2E-08 56.8 7.3 31 195-225 2-32 (133)
171 cd04605 CBS_pair_MET2_assoc Th 97.1 0.0012 2.5E-08 53.7 6.3 54 122-179 56-109 (110)
172 smart00116 CBS Domain in cysta 97.1 0.00087 1.9E-08 45.3 4.6 46 133-180 2-47 (49)
173 cd04642 CBS_pair_29 The CBS do 97.1 0.00081 1.8E-08 56.6 5.3 52 124-179 74-125 (126)
174 cd04800 CBS_pair_CAP-ED_DUF294 97.1 0.00072 1.6E-08 55.1 4.7 55 120-179 56-110 (111)
175 cd04637 CBS_pair_24 The CBS do 97.1 0.00065 1.4E-08 56.4 4.5 55 121-179 67-121 (122)
176 cd04632 CBS_pair_19 The CBS do 97.1 0.00079 1.7E-08 56.6 4.8 58 119-179 69-127 (128)
177 cd04588 CBS_pair_CAP-ED_DUF294 97.0 0.0011 2.3E-08 54.0 5.1 55 121-179 55-109 (110)
178 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0028 6.1E-08 53.7 7.7 32 194-225 2-33 (124)
179 TIGR01137 cysta_beta cystathio 97.0 0.0017 3.8E-08 67.4 7.6 41 185-225 334-374 (454)
180 cd04590 CBS_pair_CorC_HlyC_ass 97.0 0.00099 2.1E-08 54.2 4.3 54 121-179 57-110 (111)
181 TIGR00393 kpsF KpsF/GutQ famil 96.8 0.0024 5.3E-08 61.4 6.5 40 186-225 155-195 (268)
182 TIGR03415 ABC_choXWV_ATP choli 96.8 0.0035 7.6E-08 64.4 8.0 92 118-225 271-363 (382)
183 cd04591 CBS_pair_EriC_assoc_eu 96.8 0.0018 4E-08 53.2 4.8 49 126-179 56-104 (105)
184 cd04598 CBS_pair_GGDEF_assoc T 96.8 0.0015 3.4E-08 53.8 4.2 57 119-179 59-118 (119)
185 PRK01862 putative voltage-gate 96.7 0.0036 7.7E-08 67.4 7.2 41 185-225 446-486 (574)
186 PRK15094 magnesium/cobalt effl 96.7 0.0025 5.5E-08 63.1 5.5 86 121-212 133-227 (292)
187 COG2905 Predicted signal-trans 96.6 0.0027 5.9E-08 67.2 5.5 77 99-182 191-270 (610)
188 cd04634 CBS_pair_21 The CBS do 96.6 0.0041 8.9E-08 53.9 5.5 56 119-179 87-142 (143)
189 cd02205 CBS_pair The CBS domai 96.5 0.0063 1.4E-07 48.3 6.0 53 123-179 60-112 (113)
190 cd04638 CBS_pair_25 The CBS do 96.5 0.0037 8.1E-08 50.5 4.5 54 121-179 52-105 (106)
191 TIGR01302 IMP_dehydrog inosine 96.5 0.0035 7.6E-08 65.7 5.2 60 119-181 141-200 (450)
192 COG4175 ProV ABC-type proline/ 96.4 0.0092 2E-07 59.8 7.3 104 109-225 262-365 (386)
193 cd04609 CBS_pair_PALP_assoc2 T 96.4 0.012 2.5E-07 47.4 6.7 31 195-225 2-32 (110)
194 COG2239 MgtE Mg/Co/Ni transpor 95.4 0.014 3.1E-07 61.1 4.1 61 117-181 192-252 (451)
195 COG4109 Predicted transcriptio 95.0 0.022 4.9E-07 57.5 3.8 60 118-181 246-305 (432)
196 TIGR01186 proV glycine betaine 94.2 0.079 1.7E-06 54.2 5.6 57 121-182 302-358 (363)
197 KOG2550 IMP dehydrogenase/GMP 94.0 0.052 1.1E-06 55.8 3.7 113 102-225 156-271 (503)
198 PRK11573 hypothetical protein; 92.9 0.24 5.1E-06 51.5 6.7 83 125-213 259-350 (413)
199 PRK10070 glycine betaine trans 92.3 0.2 4.4E-06 51.8 5.2 58 120-182 336-393 (400)
200 COG1253 TlyC Hemolysins and re 89.4 0.88 1.9E-05 47.4 6.8 41 185-225 205-247 (429)
201 COG1125 OpuBA ABC-type proline 87.2 1.4 3.1E-05 43.4 6.1 83 133-225 189-292 (309)
202 COG4536 CorB Putative Mg2+ and 79.6 4.9 0.00011 41.4 6.5 97 115-213 259-362 (423)
203 KOG0476 Cl- channel CLC-2 and 76.0 9.6 0.00021 42.5 7.8 41 185-225 587-627 (931)
204 PF03563 Bunya_G2: Bunyavirus 73.8 12 0.00026 36.7 7.1 41 21-75 195-235 (285)
205 KOG0474 Cl- channel CLC-7 and 72.8 3.4 7.5E-05 45.0 3.5 54 124-181 693-746 (762)
206 KOG0476 Cl- channel CLC-2 and 66.0 5 0.00011 44.6 3.0 60 119-181 586-646 (931)
207 TIGR03415 ABC_choXWV_ATP choli 65.8 5.7 0.00012 41.0 3.3 46 132-181 334-379 (382)
208 COG4535 CorC Putative Mg2+ and 63.5 14 0.0003 36.0 5.2 87 121-213 133-228 (293)
209 PF14163 SieB: Superinfection 49.7 94 0.002 27.5 8.0 18 103-120 78-95 (151)
210 COG1125 OpuBA ABC-type proline 46.3 23 0.00051 35.1 3.7 59 119-179 247-307 (309)
211 COG4175 ProV ABC-type proline/ 40.9 24 0.00052 36.0 3.0 47 132-181 336-382 (386)
212 KOG0475 Cl- channel CLC-3 and 40.8 33 0.00072 37.7 4.1 53 123-180 641-693 (696)
213 PF01595 DUF21: Domain of unkn 39.9 2.3E+02 0.0049 25.1 9.0 11 100-110 157-167 (183)
214 COG2216 KdpB High-affinity K+ 33.2 43 0.00094 36.2 3.5 34 145-180 417-450 (681)
215 PRK13922 rod shape-determining 31.3 2.8E+02 0.006 26.9 8.7 64 106-174 99-164 (276)
216 TIGR03278 methan_mark_10 putat 23.7 1.3E+02 0.0028 31.4 5.1 60 155-225 306-365 (404)
217 PF14044 NETI: NETI protein 20.8 94 0.002 23.5 2.4 25 198-224 3-27 (57)
No 1
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=3.8e-44 Score=366.54 Aligned_cols=203 Identities=29% Similarity=0.504 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCccccccHHHHHHHHH
Q 015912 16 AAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGHAVLLRRAELKTFVN 92 (398)
Q Consensus 16 ~a~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~ll---g~~~~~~~s~eEL~~Lv~ 92 (398)
++++++|+++++|||++||++|.+||++++++++|++++++++|+|++|+++++++.++ |... ..+|++||+.+++
T Consensus 89 ~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~~t~eEl~~lv~ 167 (408)
T TIGR03520 89 IEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SNISVDQLSQALE 167 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999887654 5443 3589999999998
Q ss_pred hhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEE
Q 015912 93 FHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLI 172 (398)
Q Consensus 93 l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIV 172 (398)
. +.++| ++++|++|++++|+|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||+++.++++|+|
T Consensus 168 ~----~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~~~~d~ivGiv 241 (408)
T TIGR03520 168 L----TDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKETIDNITGVL 241 (408)
T ss_pred h----HhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEcCCCCceEEEE
Confidence 4 34556 6899999999999999999999999999999999999999 9999999999999999998778999999
Q ss_pred EchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q 015912 173 LVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 226 (398)
Q Consensus 173 s~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~ 226 (398)
+.||++.....+..++.++ ++++.+|++++++.++++.|++++.|+++|+|||
T Consensus 242 ~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~ 294 (408)
T TIGR03520 242 YIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY 294 (408)
T ss_pred EHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC
Confidence 9999986543333467888 5788999999999999999999999999999994
No 2
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=360.82 Aligned_cols=205 Identities=20% Similarity=0.355 Sum_probs=181.3
Q ss_pred hHHHHHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCc----cccccHHH
Q 015912 14 PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRAE 86 (398)
Q Consensus 14 ~~~a~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~l---lg~~~----~~~~s~eE 86 (398)
.+++++++|+++++|||++||++|.+||+++++++++++++++++|+|++|+++++.+.+ +|.+. ...+|++|
T Consensus 79 ~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~eE 158 (413)
T PRK11573 79 VAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEE 158 (413)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHHH
Confidence 455778899999999999999999999999999999999999999999999998887764 45432 24689999
Q ss_pred HHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCC
Q 015912 87 LKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 166 (398)
Q Consensus 87 L~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~ 166 (398)
|+.+++. +.+ .++++|++|++++|+|++++|+++|+||.++++++.+++++ ++++.+++++|||+|||+++.|
T Consensus 159 l~~lv~~----~~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~D 231 (413)
T PRK11573 159 LRTIVHE----SRS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSLD 231 (413)
T ss_pred HHHHHHH----Hhh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCCC
Confidence 9999984 222 59999999999999999999999999999999999999999 9999999999999999998889
Q ss_pred cEEEEEEchhhhcccccc-c---ccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q 015912 167 NIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 226 (398)
Q Consensus 167 ~IVGIVs~kDLl~~~~~~-~---~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~ 226 (398)
+++|+|+.||++.....+ . ..+.++ .+++.+||+++++.++|+.|++++.|+++|+|||
T Consensus 232 ~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 232 DAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred ceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 999999999998643221 1 234455 6899999999999999999999999999999995
No 3
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=343.96 Aligned_cols=202 Identities=32% Similarity=0.576 Sum_probs=180.3
Q ss_pred HHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC----ccccccHHHHHHH
Q 015912 18 VLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG---KG----HAVLLRRAELKTF 90 (398)
Q Consensus 18 ~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~llg---~~----~~~~~s~eEL~~L 90 (398)
++++|+++++|||++||++|++||+++++++++++++++++|+|++|+++++++++++ .. .....+.++++ +
T Consensus 101 ~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~~~~~~~~~~~~~~~~~-~ 179 (429)
T COG1253 101 FAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELE-L 179 (429)
T ss_pred HHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccCccHHHHH-H
Confidence 6788999999999999999999999999999999999999999999999999998653 32 22345677777 6
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEE
Q 015912 91 VNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIG 170 (398)
Q Consensus 91 v~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVG 170 (398)
++ ++.+.|.++++|++|++++|+|++++|+++||||.++++++.+.++. ++.+.+.+++|||+|||+++.|+++|
T Consensus 180 ~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~~~~SR~PV~~~~~D~iiG 254 (429)
T COG1253 180 VS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYDGDLDNIIG 254 (429)
T ss_pred HH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHhCCCCeeeEEcCCCCcEEE
Confidence 65 46789999999999999999999999999999999999999999999 99999999999999999987899999
Q ss_pred EEEchhhhccccccc--ccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q 015912 171 LILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 226 (398)
Q Consensus 171 IVs~kDLl~~~~~~~--~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~ 226 (398)
+++.||++.....+. ...... .+++++||+++++.++|++|++.+.|+++|+|||
T Consensus 255 iv~~Kdll~~~~~~~~~~~~~~~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy 311 (429)
T COG1253 255 IVHVKDLLRALLDGQSDLDLRVL-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY 311 (429)
T ss_pred EEEHHHHHHHHhcCccccchhhc-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence 999999998765542 223323 4599999999999999999999999999999995
No 4
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-40 Score=323.12 Aligned_cols=208 Identities=27% Similarity=0.457 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCc----cccccHHH
Q 015912 14 PWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLM---LGKGH----AVLLRRAE 86 (398)
Q Consensus 14 ~~~a~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~l---lg~~~----~~~~s~eE 86 (398)
..+|+.++|+++++|+|++||++|+.||++++...++++.++..+|+|++|.++++++.+ +|.+. +...+.||
T Consensus 90 vaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~~~~~~s~EE 169 (423)
T COG4536 90 VAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEE 169 (423)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccCHHH
Confidence 346889999999999999999999999999999999999999999999999999988764 56542 45688999
Q ss_pred HHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCC
Q 015912 87 LKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPT 166 (398)
Q Consensus 87 L~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~ 166 (398)
||.+++. ++++|...+++++|+.++++|++++|.|||+||.++..++.|++.+ ++++.+.++.|+|+|||.++.|
T Consensus 170 lR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtRiplyr~~~D 244 (423)
T COG4536 170 LRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTRIPLYRDDLD 244 (423)
T ss_pred HHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCceeeecCChh
Confidence 9999984 4567777788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cEEEEEEchhhhccccccc-ccchhhh--ccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q 015912 167 NIIGLILVKNLLSVDYRDA-VPLRKMI--IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 226 (398)
Q Consensus 167 ~IVGIVs~kDLl~~~~~~~-~~V~eIM--~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~ 226 (398)
+++|+++.||++++..+.+ ..-.+++ ..+|+|||+.+++.+.|..|++++.|+++|||||
T Consensus 245 nIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY 307 (423)
T COG4536 245 NIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY 307 (423)
T ss_pred HhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence 9999999999999876543 2222332 4789999999999999999999999999999996
No 5
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.96 E-value=3.6e-28 Score=238.81 Aligned_cols=147 Identities=25% Similarity=0.457 Sum_probs=128.9
Q ss_pred HHHhcCCccccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHH
Q 015912 71 DLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAI 150 (398)
Q Consensus 71 ~~llg~~~~~~~s~eEL~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m 150 (398)
..++|.+. .|++||+.+++. +.++|.|+++|+++++++|+|.+++|+++|+||.++++++.++++. ++++.+
T Consensus 24 ~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i 95 (292)
T PRK15094 24 SQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI 95 (292)
T ss_pred HHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence 33455443 489999999983 5678999999999999999999999999999999999999999999 999999
Q ss_pred HHcCCceeccccCCCCcEEEEEEchhhhcccccc--cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecC
Q 015912 151 MTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDL 226 (398)
Q Consensus 151 ~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~ 226 (398)
.+++|+++|||+++.++++|+|+.+|++.....+ ...+.++| +++++|++++++.++++.|++++.+++||+|+|
T Consensus 96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~ 172 (292)
T PRK15094 96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEF 172 (292)
T ss_pred HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC
Confidence 9999999999987668999999999998644321 23578885 677899999999999999999999999999993
No 6
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.94 E-value=8.9e-28 Score=250.61 Aligned_cols=349 Identities=40% Similarity=0.553 Sum_probs=271.0
Q ss_pred Ccc-hhhhHhhhhhhHHHHHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 015912 1 MEA-LPIFLDKLVPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLGKGHA 79 (398)
Q Consensus 1 ~e~-l~i~l~~~~~~~~a~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~llg~~~~ 79 (398)
||+ |+++++..++.|.|+.+++..+++||||+||++|.+|+..++..+.|+.++++++++|+.|+++++ ++++|....
T Consensus 85 ~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~~~ 163 (498)
T KOG2118|consen 85 TEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLNLG 163 (498)
T ss_pred cccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccccc
Confidence 578 999999999999999999999999999999999999999999999999999999999999999998 888888877
Q ss_pred ccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceec
Q 015912 80 VLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 159 (398)
Q Consensus 80 ~~~s~eEL~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlP 159 (398)
....+.+++.++.+++.++.+ |.+..+|..++.+++++.++.++++|+|..+++.++.+..+.++.+..+.++||+|+|
T Consensus 164 ~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~srip 242 (498)
T KOG2118|consen 164 EFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIP 242 (498)
T ss_pred cchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceee
Confidence 778889999999999887766 9999999999999999999999999999999999999999987788888899999999
Q ss_pred cccCCCCcEEEEEEchhhhccc----ccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEecCCcccccccc
Q 015912 160 VYSGNPTNIIGLILVKNLLSVD----YRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 235 (398)
Q Consensus 160 Vvd~d~~~IVGIVs~kDLl~~~----~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe~G~~~~~~~~ 235 (398)
|++.+..+.+|.+....++... .....++.+.|.++...+++++++.+.++.|++.+.|++.|...++....-...
T Consensus 243 v~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~~~~l~ 322 (498)
T KOG2118|consen 243 VYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIFVLTLE 322 (498)
T ss_pred eccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEecCCcceeeEecc
Confidence 9997767778777767666655 334568888889999999999999999999999999999998753321111110
Q ss_pred ccCCCCCCCCCCCCcccccccc-ccccccccccccchhh--hcccCCCCCCCccccCCCCCCcccccCCCCCCCCCCCC-
Q 015912 236 KDNCKKPRGQPEKSSQKVDNGV-TAAGQNLRNKLESKDA--QQTKKVPPATPTFNKRHRGCSYCILDFENGPFPDFPSN- 311 (398)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 311 (398)
...+-. .|+..+....+. +-+|...+--+...++ -+.+......+..++|+..++-+++|....++++....
T Consensus 323 ---~~~~~~-~ev~de~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (498)
T KOG2118|consen 323 ---DLEEVV-KEVEDEEDKEEIKFETGIFTLRGIGDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSRKSAFEDLAELG 398 (498)
T ss_pred ---chhhhc-ceeccccccccchhcccchhhcccccccccccchhhhhcccccccccCCCCCcccccccccccccccccc
Confidence 000000 122111111111 1111111111111111 00000000122367888877788999988888888776
Q ss_pred CceEEEEeHHHHHHHHHhchhccchhhhhhHHHHhhhhcccccc
Q 015912 312 DEAVGVITMEDVIEELLQEEILDETDEYVNIHNRIKVNMHASQE 355 (398)
Q Consensus 312 ~~~vGiit~~Dvie~l~~~ei~de~d~~~~~~~~~~~~~~~~~~ 355 (398)
....|+.|++|+++++.+++|.++.+.+...+++.+...+++.-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~ 442 (498)
T KOG2118|consen 399 EIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLASLM 442 (498)
T ss_pred ccCccceehhhhhccccchhhhccccceechhhhhhhHhhhhhh
Confidence 44578999999999999999999999999999998888776643
No 7
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.6e-27 Score=218.53 Aligned_cols=180 Identities=26% Similarity=0.490 Sum_probs=161.1
Q ss_pred HHHHHHHHhcCCccccccHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHH
Q 015912 66 ISKILDLMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD 145 (398)
Q Consensus 66 l~~l~~~llg~~~~~~~s~eEL~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~e 145 (398)
+..+++.++..+. -+++||..+++ ++++.+.++.+.+.|+.++++..+.+|+|||+||++++++..+.++. +
T Consensus 19 fe~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~ 90 (293)
T COG4535 19 FERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-E 90 (293)
T ss_pred HHHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-H
Confidence 4555555554333 46999999998 56788999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEE
Q 015912 146 TLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVY 223 (398)
Q Consensus 146 al~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVV 223 (398)
.+..|.++.||||||+.++.+++.||+..|||++....+ ...++++ .||+++||+...+..+|+.|+.++.|||+|+
T Consensus 91 ~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIVi 169 (293)
T COG4535 91 CLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVI 169 (293)
T ss_pred HHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEE
Confidence 999999999999999998889999999999999875443 4678887 8999999999999999999999999999999
Q ss_pred ecCCccccccccccCCCCCCCCCCCCccccccccccccccccccccchhhhcccCCCCCCCccccCCCCCCcccccCCCC
Q 015912 224 KDLNEKKEGELFKDNCKKPRGQPEKSSQKVDNGVTAAGQNLRNKLESKDAQQTKKVPPATPTFNKRHRGCSYCILDFENG 303 (398)
Q Consensus 224 De~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (398)
|||
T Consensus 170 DEf----------------------------------------------------------------------------- 172 (293)
T COG4535 170 DEF----------------------------------------------------------------------------- 172 (293)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 996
Q ss_pred CCCCCCCCCceEEEEeHHHHHHHHHhchhccchhhhh
Q 015912 304 PFPDFPSNDEAVGVITMEDVIEELLQEEILDETDEYV 340 (398)
Q Consensus 304 ~~~~~~~~~~~vGiit~~Dvie~l~~~ei~de~d~~~ 340 (398)
|.+-|+||.|||+|.+. .+|.||.|+-.
T Consensus 173 --------GgVsGLVTIEDiLEqIV-GdIEDE~Deee 200 (293)
T COG4535 173 --------GGVSGLVTIEDILEQIV-GDIEDEYDEEE 200 (293)
T ss_pred --------CCeeeeEEHHHHHHHHh-cccccccchhh
Confidence 56899999999999998 59999998765
No 8
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.73 E-value=3.8e-17 Score=169.64 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=116.0
Q ss_pred cccHHHHHHHHHhhccccccC------CCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHH--
Q 015912 81 LLRRAELKTFVNFHGNEAGKG------GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMT-- 152 (398)
Q Consensus 81 ~~s~eEL~~Lv~l~~~e~~e~------G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-- 152 (398)
.++.+|+..+++. ..++ +.++++|+++++++++|.+.+|+++|++ +++++++++|+. ++++.|++
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4678999999874 3333 5799999999999999999999999995 889999999999 99999986
Q ss_pred ---cCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 153 ---MGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 153 ---~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++...++|+|++ ++++|+|+.+|++.... +.+++++|.++++++++++++.++++.|++++...+||||+
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~~--~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~ 234 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAKP--EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN 234 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCCC--CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC
Confidence 234456667765 89999999999987643 34799999888889999999999999999999999999998
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=3.2e-16 Score=151.22 Aligned_cols=137 Identities=15% Similarity=0.261 Sum_probs=116.5
Q ss_pred cccHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhc-------CcccccccccccCccEEEEeCCCChHHHHHHHHHHc
Q 015912 81 LLRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALE-------LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTM 153 (398)
Q Consensus 81 ~~s~eEL~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~-------L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~ 153 (398)
.++.++|.+.++. -.|-=+++.++.+.+.+-.+ +.+.++.|||++ +|++++.+++++ ++.+++.++
T Consensus 202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 4788999888873 34556677777655544333 678999999996 899999999999 999999999
Q ss_pred CCceeccccCCCCcEEEEEEchhhhccccc---------ccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q 015912 154 GHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYK 224 (398)
Q Consensus 154 ~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---------~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVD 224 (398)
++..+||+|++ .+++|+|+.+|++..... ...+++.+|..++.+|.++++..+++..|.+.+.|.+||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999986 899999999999873211 14579999999999999999999999999999999999999
Q ss_pred c
Q 015912 225 D 225 (398)
Q Consensus 225 e 225 (398)
+
T Consensus 354 ~ 354 (382)
T COG3448 354 A 354 (382)
T ss_pred C
Confidence 8
No 10
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.71 E-value=3.4e-17 Score=155.37 Aligned_cols=109 Identities=17% Similarity=0.320 Sum_probs=100.4
Q ss_pred HHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--cccch
Q 015912 112 IAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLR 189 (398)
Q Consensus 112 I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~ 189 (398)
+..+..+.+.+|+++|++ +++++.+++|+. ++.+++.++++...||+|+ ++++|+++..|+..+..++ +.+|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 345566889999999996 789999999999 9999999999999999987 5999999999999887665 67899
Q ss_pred hhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 190 KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 190 eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++|.+.++++.+|+.+.||++.|.++++..++|+|.
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds 273 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS 273 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc
Confidence 999999999999999999999999999999999996
No 11
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.66 E-value=1.1e-15 Score=158.91 Aligned_cols=133 Identities=14% Similarity=0.242 Sum_probs=114.0
Q ss_pred ccccHHHHHHHHHhhccccccCCCCCH-----HHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 015912 80 VLLRRAELKTFVNFHGNEAGKGGDLTH-----DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 154 (398)
Q Consensus 80 ~~~s~eEL~~Lv~l~~~e~~e~G~L~~-----eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 154 (398)
..+|++|+..++.. .+..|.|.+ +|++++++++.+.+. |.+ +++++++++++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 35799999999874 345788884 899999999977654 554 678899999999 9999999999
Q ss_pred CceeccccCCC--CcEEEEEEchhhhcccccccccchhhhc-cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 155 HSRVPVYSGNP--TNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 155 ~srlPVvd~d~--~~IVGIVs~kDLl~~~~~~~~~V~eIM~-r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++||++++. ++++|+|+.+|++.... ...++.++|. .+++++++++++.++++.|.+++.+.+||+|+
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe 183 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVKD-KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK 183 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 99999998753 68999999999986432 3468999987 48999999999999999999999999999998
No 12
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.64 E-value=1.4e-15 Score=149.84 Aligned_cols=114 Identities=21% Similarity=0.298 Sum_probs=102.8
Q ss_pred HHHHHHHHhc-----CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc
Q 015912 108 ETTIIAGALE-----LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 182 (398)
Q Consensus 108 E~~~I~~~l~-----L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~ 182 (398)
-+.||.+++. -+-.+|+|||+|..+..++..+++++ +..++..+.|++||||+|.. .+++|+|+.||+....+
T Consensus 170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~ 247 (432)
T COG4109 170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP 247 (432)
T ss_pred HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC
Confidence 4566666654 34478999999999999999999999 99999999999999999976 78999999999997765
Q ss_pred cccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 183 RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 183 ~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+ +++..+|++.|.+|.+.+++..+.+.|.-.++.++||+|+
T Consensus 248 ~--t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~ 288 (432)
T COG4109 248 S--TTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS 288 (432)
T ss_pred C--ccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC
Confidence 4 5899999999999999999999999999999999999998
No 13
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.55 E-value=4.9e-14 Score=145.69 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC-----CceeccccCCCCcEEEEEEchhh
Q 015912 103 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNL 177 (398)
Q Consensus 103 ~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~-----~srlPVvd~d~~~IVGIVs~kDL 177 (398)
.+++++++.++.++.+.+.+++.+|+. +++++.+++|+. +++..+++.+ ...+.|+|.+ ++++|+|+.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 378999999999999999999999995 899999999999 9999999654 3466777876 789999999999
Q ss_pred hcccccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 178 LSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 178 l~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+...++. .++++|.+.+++|.++++.+++.+.|++++.-.+||||+
T Consensus 190 l~a~~~~--~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 190 LTAEPDE--LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred hcCCcHh--HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 9776544 899999999999999999999999999999999999998
No 14
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.54 E-value=9.5e-14 Score=145.65 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=112.5
Q ss_pred ccccHHHHHHHHHhhccccccCCCCC-----HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcC
Q 015912 80 VLLRRAELKTFVNFHGNEAGKGGDLT-----HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMG 154 (398)
Q Consensus 80 ~~~s~eEL~~Lv~l~~~e~~e~G~L~-----~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~ 154 (398)
..+|++||..++.. .+..|.|. ++++++++++.. ++++|.+ +++++++++++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 36789999999873 44567777 577889988876 4567774 778899999999 9999999999
Q ss_pred CceeccccCCCCcEEEEEEchhhhcccccccccchhhhc-cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 155 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMII-RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 155 ~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~-r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++||++++ ++++|+|+.+|+..... ...++.++|. ++++++++++++.++++.|.+++.+.+||+|+
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~~-~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe 187 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFETD-LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD 187 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhccc-CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 9999999965 89999999999975432 2457999987 78899999999999999999999999999998
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=7.4e-14 Score=116.04 Aligned_cols=92 Identities=20% Similarity=0.374 Sum_probs=81.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--cccchhhhccCCcEEcCCCCHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
++.+++.++++. ++++.|.+++++++||++++ ++++|+|+.+|+.+...+. ..++.++|..++.++.+++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 457889999999 99999999999999999875 8999999999998753322 3468999988899999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
+.|.+++.+.+||+|+
T Consensus 80 ~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 80 RIFRETEPPVVAVVDK 95 (111)
T ss_pred HHHHHcCCCeEEEEcC
Confidence 9999999999999987
No 16
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=4.7e-14 Score=140.14 Aligned_cols=105 Identities=19% Similarity=0.124 Sum_probs=91.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhcc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR 194 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r 194 (398)
...+|+++|++..++.++++++++. ++++.|.++++..+||++++ |+++|+|+.+|+.+....+ ..++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 5678999998644788999999999 99999999998888888765 8999999999997654321 3579999999
Q ss_pred CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 195 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 195 ~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 308 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVADG 308 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence 9999999999999999999999999999976
No 17
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=2e-13 Score=113.83 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-----ccccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-----~~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 467889999999 99999999999999999876 899999999999864321 13578999988999999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHHHHHHHcCCCeEEEECC
Confidence 9999999999999999987
No 18
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.50 E-value=7.8e-14 Score=126.72 Aligned_cols=93 Identities=33% Similarity=0.564 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCc--cccccHHH
Q 015912 12 VPPWAAVLISVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLML---GKGH--AVLLRRAE 86 (398)
Q Consensus 12 ~~~~~a~li~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~ll---g~~~--~~~~s~eE 86 (398)
.+.+++++++++++++|||++||++|.+||++++.+.+|++++++.+++|+++++.++.++++ |.+. ...+++||
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~ee 165 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEE 165 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH
Confidence 445677888999999999999999999999999999999999999999999999999988765 3332 45789999
Q ss_pred HHHHHHhhccccccCCCCCHHH
Q 015912 87 LKTFVNFHGNEAGKGGDLTHDE 108 (398)
Q Consensus 87 L~~Lv~l~~~e~~e~G~L~~eE 108 (398)
|+.+++ +++++|.++++|
T Consensus 166 l~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 166 LRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred HHHHHH----hHHHCCCCCCCC
Confidence 999998 467889998875
No 19
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2e-13 Score=112.08 Aligned_cols=92 Identities=12% Similarity=0.260 Sum_probs=81.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++....+..++.++|.+++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567899999999 99999999999999999876 8999999999998654433346889988899999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+.+.+.+||+++
T Consensus 81 ~~~~~~~~~~Vv~~ 94 (110)
T cd04605 81 MERHNISALPVVDA 94 (110)
T ss_pred HHHhCCCEEeEECC
Confidence 99999999999987
No 20
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=2.2e-13 Score=114.38 Aligned_cols=92 Identities=16% Similarity=0.223 Sum_probs=76.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----cccchh------hhccCCcEEc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRK------MIIRRIPRVS 200 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----~~~V~e------IM~r~~~~V~ 200 (398)
++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....+ ..++.+ +|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 467899999999 99999999999999999875 8999999999998643222 112333 2335578999
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 201 EDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 201 ~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEECC
Confidence 9999999999999999999999987
No 21
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=1.1e-13 Score=136.98 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=90.9
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc---ccccchhhhccCC
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRI 196 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---~~~~V~eIM~r~~ 196 (398)
..+|+++|.+..++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+.+.... ...++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 568999998633388999999999 99999999999999999876 899999999998764322 2457899999999
Q ss_pred cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 197 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 197 ~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.++.+++++.++++.|.+++...+||+|+
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 302 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDE 302 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999999997
No 22
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.49 E-value=1.8e-13 Score=121.93 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=95.3
Q ss_pred cCCCCCHHH---HHHHHHHhcC--cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEc
Q 015912 100 KGGDLTHDE---TTIIAGALEL--TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILV 174 (398)
Q Consensus 100 e~G~L~~eE---~~~I~~~l~L--~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~ 174 (398)
|.|.+++.= +++++.+.+- ...+++.||+. +++.+.+++++. +++++|.++|+|.+||+++ |++||-|+.
T Consensus 39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE 113 (187)
T COG3620 39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE 113 (187)
T ss_pred hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence 567777643 3333333333 33689999984 899999999999 9999999999999999987 799999999
Q ss_pred hhhhcccccc-----cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 175 KNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 175 kDLl~~~~~~-----~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++.++..++ ...++++|-.++++|++++++..+-+++..+ ..+.|+++
T Consensus 114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~ 167 (187)
T COG3620 114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVEN 167 (187)
T ss_pred HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEeC
Confidence 9998875332 5689999999999999999999988888766 34666643
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=2.8e-13 Score=111.36 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=72.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
+++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+.+... +.++.+++++.+|++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence 578899999999 99999999999999999864478999999999976421 6789999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++.+.+||+|+
T Consensus 68 m~~~~~~~lpVvd~ 81 (98)
T cd04618 68 LLKNKIHRLPVIDP 81 (98)
T ss_pred HHHCCCCEeeEEEC
Confidence 99999999999987
No 24
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=3e-13 Score=111.44 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=81.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---cccchhhhccCCcEEcCCCCHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
++..++.++++. ++++.|.+++++++||++++ ++++|+++.+|++...... ..++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 456789999999 89999999999999999875 8999999999998754322 346889988889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
+..|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 80 LDIMREKQIGRLPVVDD 96 (111)
T ss_pred HHHHHHcCCCeeeEeEC
Confidence 99999999999999987
No 25
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=4.4e-13 Score=110.02 Aligned_cols=92 Identities=12% Similarity=0.202 Sum_probs=80.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----cccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|+++..... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 456789999999 99999999999999999876 8999999999998653221 3478899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+.+.+.+||+++
T Consensus 80 ~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 80 EAMALMTERRFRHLPVVDG 98 (113)
T ss_pred HHHHHHHHcCCCEeEEEeC
Confidence 9999999999999999986
No 26
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=4.2e-13 Score=110.38 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=81.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 3 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 3 DTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKDP--DTTIEKVMTKNPITVNPKTSVASVAHM 78 (108)
T ss_pred ccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhcccc--cccHHHHhcCCCeEECCCCCHHHHHHH
Confidence 577899999999 99999999999999999875 89999999999986532 347999988889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~Vv~~ 92 (108)
T cd04596 79 MIWEGIEMLPVVDD 92 (108)
T ss_pred HHHcCCCeeeEEcC
Confidence 99999999999987
No 27
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=4.7e-13 Score=111.19 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=80.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-----ccccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-----~~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.++.+++++. ++++.|.+++++.+||++++.++++|+++.+|+++.... ...++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 567899999999 999999999999999998633799999999999864211 13578899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 81 YCARLMERTNIRRAPVVEN 99 (114)
T ss_pred HHHHHHHHcCCCEeeEeeC
Confidence 9999999999999999987
No 28
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.47 E-value=4.6e-13 Score=111.23 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=79.9
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhccCCcEEcCCCCHHHH
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
+..+++++++. ++++.|.+.+++++||++++ ++++|+++.+||+...... ..++.++|.+++.++++++++.++
T Consensus 3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHH
Confidence 45688999999 99999999999999999876 8999999999998654321 234888888899999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|.+++.+.+||+|+
T Consensus 81 l~~~~~~~~~~~~Vvd~ 97 (115)
T cd04593 81 LDRMASRGLRQLPVVDR 97 (115)
T ss_pred HHHHHHcCCceeeEEeC
Confidence 99999999999999987
No 29
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.47 E-value=4.4e-13 Score=110.24 Aligned_cols=92 Identities=41% Similarity=0.638 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccccc--ccchhhhccCCcEEcCCCCHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--VPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~--~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
++.+++.++++. ++++.|.+.+++.+||++++.++++|+++.+|+++....+. .++.++ ++++.++.+++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 578899999999 99999999999999999864378999999999987654321 356666 47888999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04590 80 EEMRKERSHMAIVVDE 95 (111)
T ss_pred HHHHhcCCcEEEEEEC
Confidence 9999999999999987
No 30
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=6.7e-13 Score=111.31 Aligned_cols=92 Identities=16% Similarity=0.343 Sum_probs=81.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--------------cccchhhhccCCc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 197 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--------------~~~V~eIM~r~~~ 197 (398)
++.+++++.++. ++.+.|.+++++++||++++ ++++|+|+.+|++...... ..++.++|.+.+.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 567899999999 99999999999999999876 8999999999997643221 2368899888899
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 9999999999999999999999999987
No 31
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=6e-13 Score=109.45 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=80.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc--ccccchhhhccCCcEEcCCCCHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~--~~~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
++.++..++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456789999999 99999998999999999875 899999999999865322 23478999888999999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
+.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~Vv~~ 95 (111)
T cd04639 80 RLMQQGGAPAVPVVDG 95 (111)
T ss_pred HHHHhcCCceeeEEcC
Confidence 9999999999999987
No 32
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=6.2e-13 Score=109.56 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=80.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---cccchhhhccCCcEEcCCCCHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
++.+++.+.++. ++++.|.+.+++++||++++ ++++|+|+.+|+++....+ ..++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 356789999999 99999999999999999876 8999999999997653322 357889988899999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|.+++...+||+|+
T Consensus 80 ~~~~~~~~~~~~~Vv~~ 96 (112)
T cd04624 80 AKLMRKNNIRHHLVVDK 96 (112)
T ss_pred HHHHHHcCccEEEEEcC
Confidence 99999999999999987
No 33
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=8.3e-13 Score=111.96 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=77.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccc-----------------cchhhhcc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV-----------------PLRKMIIR 194 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~-----------------~V~eIM~r 194 (398)
++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.....+.. ...+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999999 99999999999999999876 899999999999875432210 12245677
Q ss_pred CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 195 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 195 ~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++.++++++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~ 110 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDE 110 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 8899999999999999999999999999987
No 34
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1e-12 Score=108.72 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=77.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---------cccchhhhccCCcEEcCC
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKMIIRRIPRVSED 202 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---------~~~V~eIM~r~~~~V~~d 202 (398)
++++++.++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++..... ..++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 567899999999 99999999999999999875 8999999999998754321 346889988889999999
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 015912 203 MPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 203 ~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++.++++.|.+.+ .+||+|+
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~~ 100 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVDD 100 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEeC
Confidence 99999999998864 5899987
No 35
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.2e-12 Score=109.52 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=80.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-------------ccccchhhhccCCcE
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-------------DAVPLRKMIIRRIPR 198 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-------------~~~~V~eIM~r~~~~ 198 (398)
++.++.+++++. ++.+.|.+.+++++||++++ ++++|+++.+|+++.... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456789999999 99999999999999999875 899999999999865321 235688898888999
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++++.++++.|.+.+.+.+||+|+
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVDD 106 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 999999999999999999999999987
No 36
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=9.7e-13 Score=110.47 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=80.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---------------cccchhhhccCC
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------------AVPLRKMIIRRI 196 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---------------~~~V~eIM~r~~ 196 (398)
++.+++++.++. ++++.|.+.+++.+||++++.++++|+|+.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 456789999999 9999999999999999986447899999999998654321 236888888889
Q ss_pred cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 197 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 197 ~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 109 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDD 109 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC
Confidence 99999999999999999999999999987
No 37
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.3e-12 Score=108.24 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=79.2
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc---ccccchhhhccCCcEEcCCCCHHHHH
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---~~~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
.++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 46789999999 99999999999999999875 899999999998764322 13568899878888999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
+.|.+++.+.+||+|+
T Consensus 82 ~~~~~~~~~~~~Vv~~ 97 (113)
T cd04607 82 ALMRERSIRHLPILDE 97 (113)
T ss_pred HHHHHCCCCEEEEECC
Confidence 9999999999999987
No 38
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=8.8e-13 Score=110.54 Aligned_cols=92 Identities=12% Similarity=0.241 Sum_probs=79.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhcc--CCcEEcCCCCH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIR--RIPRVSEDMPL 205 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r--~~~~V~~d~~l 205 (398)
++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..... ..++.++|.+ ++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 457899999999 89999999999999999875 7899999999988754321 3467888864 68899999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 015912 206 YDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 206 ~daL~~m~~~~~~~apVVDe 225 (398)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999997
No 39
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1e-12 Score=113.91 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=80.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---------------------------
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------------------- 184 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--------------------------- 184 (398)
++.++++++++. ++++.|.+.+++++||+|++ ++++|+|+.+|+++.....
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 456789999999 99999999999999999875 8999999999998754211
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..++.++|..++.+|++++++.++++.|.+++.+.+||+++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 23688998888899999999999999999999999999987
No 40
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=8.5e-13 Score=111.25 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=76.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--c-----------ccchhhhccCCcE
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--A-----------VPLRKMIIRRIPR 198 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~-----------~~V~eIM~r~~~~ 198 (398)
++.+++.++++. ++++.|.+++++++||++++.++++|+|+.+|+++..... . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467789999999 9999999999999999986437899999999998643211 0 1122456788889
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.+++++.++++.|.+++.+.+||+|+
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd~ 107 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVDN 107 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEECC
Confidence 999999999999999999999999987
No 41
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=8.6e-13 Score=137.98 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcE
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 198 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~ 198 (398)
...+++++|++ +++++++++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+..... ..++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~~--~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVDR--FTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCcc--CCCHHHhccCCceE
Confidence 35567899975 778999999999 99999999999999999865 89999999999976532 35799999999999
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++++.++++.|.+++.+.+||+|+
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~ 187 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDA 187 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcC
Confidence 999999999999999999999999987
No 42
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.3e-12 Score=106.13 Aligned_cols=89 Identities=10% Similarity=0.195 Sum_probs=79.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++..+++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456789999999 999999999999999997 3 79999999999987643 346889988889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (105)
T cd04599 77 MEEKKIERLPVLRE 90 (105)
T ss_pred HHHcCCCEeeEEEC
Confidence 99999999999987
No 43
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.41 E-value=2.1e-12 Score=105.29 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++.+++++.++. ++++.|.++++..+||++++ |+++|+++.+|+++... .++.++|.+.+.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 456789999999 99999999999999999865 89999999999987532 25788887777889999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++...+||+|+
T Consensus 77 ~~~~~~~~~~Vv~~ 90 (106)
T cd04582 77 MFAHDMSWLPCVDE 90 (106)
T ss_pred HHHCCCCeeeEECC
Confidence 99999999999987
No 44
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2.1e-12 Score=107.99 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=80.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc-------------cccccchhhhccCCcE
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 198 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~-------------~~~~~V~eIM~r~~~~ 198 (398)
++.++.++.++. ++++.|.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567899999999 99999999999999999865 89999999999976310 1234688888888899
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++++.++++.|.+.+.+.+||+|+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 106 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNE 106 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC
Confidence 999999999999999999999999987
No 45
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=9.1e-13 Score=109.27 Aligned_cols=92 Identities=13% Similarity=0.195 Sum_probs=77.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeccccCCCCcEEEEEEchhhhcccccc--cccchhhhcc--CCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIR--RIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~eIM~r--~~~~V~~d~~l~ 206 (398)
++.++++++++. ++++.|.+++ ++.+||++++ ++++|+|+.+|++...... ..++.++|.. +++++.+++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 456789999999 9999887665 8899999875 8999999999998765322 3578888753 356899999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++.+.+||+|+
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 80 EVLKLLEEQGLDELAVVED 98 (114)
T ss_pred HHHHHHHHCCCCeeEEEcC
Confidence 9999999999999999987
No 46
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.41 E-value=9.6e-13 Score=140.57 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=91.3
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----ccccchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 193 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~----~~~~V~eIM~ 193 (398)
+...+|+|+|++ ++.++++++++. ++.+.|.+++++.+||+|++ ++++|+|+.+|+.+...+ ...++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 567789999986 567899999999 99999999999999999876 899999999999873211 1357899998
Q ss_pred cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 194 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 194 r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~ 551 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVES 551 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC
Confidence 89999999999999999999999999999987
No 47
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.41 E-value=2.2e-12 Score=105.66 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccccc---ccchhhhccCCcEEcCCCCHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---VPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~---~~V~eIM~r~~~~V~~d~~l~da 208 (398)
++..++.+.++. ++++.|.+.+++++||+++ ++++|+++.+|+++...... .++.++|.+++.++.+++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 456799999999 9999999999999999986 89999999999987554321 25778888999999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~V~~~ 95 (111)
T cd04612 79 LKRMAERDIGRLPVVDD 95 (111)
T ss_pred HHHHHhCCCCeeeEEcC
Confidence 99999999999999987
No 48
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.40 E-value=2.5e-12 Score=105.02 Aligned_cols=91 Identities=16% Similarity=0.272 Sum_probs=80.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++..++++.++. ++++.|.++++.++||++++ ++++|+|+.+|++..... ..++.++|...+.++++++++.+++..
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-AKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-CCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 456789999999 99999999999999999875 899999999999865422 347889988889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~vv~~ 93 (109)
T cd04583 80 VLKRGPKYVPVVDE 93 (109)
T ss_pred HHHcCCceeeEECC
Confidence 99999999999987
No 49
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=2.4e-12 Score=105.89 Aligned_cols=91 Identities=18% Similarity=0.340 Sum_probs=80.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc--ccccchhhhccCCcEEcCCCCHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--DAVPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~--~~~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+|+.+|+++.... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567899999999 9999999999999999986 799999999999865422 24578899988999999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
..|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~V~~~ 95 (110)
T cd04595 80 ELMVEHDIGRVPVVED 95 (110)
T ss_pred HHHHHcCCCeeEEEeC
Confidence 9999999999999985
No 50
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.40 E-value=2.7e-12 Score=104.99 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=78.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcC-CCCHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE-DMPLYDILN 210 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~-d~~l~daL~ 210 (398)
++..++.+.++. ++++.|.+++++++||++++ ++++|+++.+|++.... ...++.++|...+.++.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 456789999999 89999999999999999876 89999999999976532 345789998766777777 999999999
Q ss_pred HHHhCCCcEEEEEec
Q 015912 211 EFQKGHSHIAVVYKD 225 (398)
Q Consensus 211 ~m~~~~~~~apVVDe 225 (398)
.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 80 LLHEHKIEKLPVVDD 94 (110)
T ss_pred HHHHhCCCeeeEEcC
Confidence 999999999999987
No 51
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.40 E-value=2.6e-12 Score=105.22 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=80.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc---ccccchhhhccCCcEEcCCCCHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---~~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
++.+++++.++. ++++.|.+.++..+||+++ ++++|+++.+|+++.... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 456789999999 9999999999999999976 799999999999875432 2457889988889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|.+.+.+.+||+|+
T Consensus 79 l~~~~~~~~~~~~Vv~~ 95 (111)
T cd04611 79 RQLMREHGIRHLVVVDD 95 (111)
T ss_pred HHHHHHcCCeEEEEECC
Confidence 99999999999999987
No 52
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.4e-12 Score=110.00 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=79.8
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----c--------------------cc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----A--------------------VP 187 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~--------------------~~ 187 (398)
++.++.+++++. ++++.|.+.+++++||++++ ++++|+++.+|++...... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999999 99999999999999999875 8999999999998643221 1 17
Q ss_pred chhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 188 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 188 V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~ 117 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD 117 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC
Confidence 88888888999999999999999999999999999987
No 53
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2e-12 Score=106.67 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc------ccccchhhhccCCcEEcCCCCH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR------DAVPLRKMIIRRIPRVSEDMPL 205 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~------~~~~V~eIM~r~~~~V~~d~~l 205 (398)
++.+++.+.++. ++++.|.+++++.+||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456789999999 99999999999999999875 799999999999864321 2357889988888999999999
Q ss_pred HHHHHHHHhCCCcEEEEEec
Q 015912 206 YDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 206 ~daL~~m~~~~~~~apVVDe 225 (398)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred HHHHHHHHHhCCCccCEEEC
Confidence 99999999999999999987
No 54
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=1.9e-12 Score=109.86 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=75.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc----------ccccccchhhhccCCcE--E
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD----------YRDAVPLRKMIIRRIPR--V 199 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~----------~~~~~~V~eIM~r~~~~--V 199 (398)
++.++..++++. ++++.|.++++..+||++++ ++++|+++.+|+.... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 356789999999 99999998999999999875 8999999999998521 11235688998655433 3
Q ss_pred ----cCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 200 ----SEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 200 ----~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+++++.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~ 109 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVDR 109 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEEC
Confidence 37899999999999999999999997
No 55
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.39 E-value=3.1e-12 Score=105.01 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=80.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--cccchhhhccCCcEEcCCCCHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--AVPLRKMIIRRIPRVSEDMPLYDIL 209 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--~~~V~eIM~r~~~~V~~d~~l~daL 209 (398)
++..++.++++. ++++.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 466789999999 9999999999999999986 7899999999998764332 2468888888889999999999999
Q ss_pred HHHHhCCCcEEEEEec
Q 015912 210 NEFQKGHSHIAVVYKD 225 (398)
Q Consensus 210 ~~m~~~~~~~apVVDe 225 (398)
+.|.+.+.+.+||+++
T Consensus 79 ~~~~~~~~~~~~V~~~ 94 (110)
T cd04588 79 RLMNKHNVGRLIVTDD 94 (110)
T ss_pred HHHHhcCCCEEEEECC
Confidence 9999999999999987
No 56
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.39 E-value=2.8e-12 Score=105.60 Aligned_cols=91 Identities=18% Similarity=0.263 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----ccccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~----~~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
+++.++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++..... ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 346789999999 9999999999999999986 689999999999865322 135788998888999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 79 ALLLMTRHRIHRVVVREG 96 (111)
T ss_pred HHHHHHHhCccEEEEeeC
Confidence 999999999999999986
No 57
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.39 E-value=5.7e-13 Score=113.75 Aligned_cols=81 Identities=19% Similarity=0.333 Sum_probs=70.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc----cccccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY----RDAVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~----~~~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.... ....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 567899999999 99999999999999999876 89999999999986321 2256899999999999999999999
Q ss_pred HHHHHHh
Q 015912 208 ILNEFQK 214 (398)
Q Consensus 208 aL~~m~~ 214 (398)
+.+.|..
T Consensus 81 v~~~~~~ 87 (124)
T cd04608 81 LSRILET 87 (124)
T ss_pred HHhhccc
Confidence 9997754
No 58
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=4.1e-12 Score=103.57 Aligned_cols=89 Identities=17% Similarity=0.322 Sum_probs=79.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++.... ..++.++|...+.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKDP--DETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccCc--cccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 567899999999 9999999888899999975 79999999999986532 346899988888999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vv~~ 91 (107)
T cd04610 78 MFRTGISKLPVVDE 91 (107)
T ss_pred HHHhCCCeEeEECC
Confidence 99999999999987
No 59
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=3.6e-12 Score=105.12 Aligned_cols=91 Identities=13% Similarity=0.230 Sum_probs=79.4
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----ccccchhhhccCCcEEcCCCCHHHH
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~----~~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
...+.+++++. ++++.|.+.+++++||++++ ++++|+|+.+|+++.... ...++.++|..++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35789999999 99999999999999999875 899999999999864221 1357889988889999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|.+.+.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~Vvd~ 97 (113)
T cd04615 81 RWLMSNNNISRLPVLDD 97 (113)
T ss_pred HHHHHHcCCCeeeEECC
Confidence 99999999999999987
No 60
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2.4e-12 Score=106.02 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=74.8
Q ss_pred EeCCCChHHHHHHHHHHcC-----CceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHH
Q 015912 136 LDLDATLTLDTLNAIMTMG-----HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILN 210 (398)
Q Consensus 136 V~~d~tv~~eal~~m~~~~-----~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~ 210 (398)
+.+++++. ++++.|.+++ +..+||++++ ++++|+|+.+|++.... ..++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLADP--DTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCCC--cchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 56788999 8999998877 4678999865 89999999999987532 35789998788899999999999999
Q ss_pred HHHhCCCcEEEEEec
Q 015912 211 EFQKGHSHIAVVYKD 225 (398)
Q Consensus 211 ~m~~~~~~~apVVDe 225 (398)
.|.+.+.+.+||+|+
T Consensus 78 ~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 78 LFEKYDLLALPVVDE 92 (109)
T ss_pred HHHHcCCceeeeECC
Confidence 999999999999987
No 61
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.38 E-value=3.7e-12 Score=104.63 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=81.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456799999999 99999999999999999876 8999999999998653221 25788999899999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+.+.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~Vv~~ 97 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDD 97 (114)
T ss_pred HHHHHhhCCccEeeEEeC
Confidence 999999999999999975
No 62
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.8e-12 Score=107.81 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-----------------ccccchhhhcc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----------------DAVPLRKMIIR 194 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-----------------~~~~V~eIM~r 194 (398)
++.++.+++++. ++++.|.+.+++.+||++++ ++++|+++.+|++..... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 456789999999 99999999999999999876 899999999998753210 12468899888
Q ss_pred CCcEEcCCCCHHHHHHHHHhCCCcEEEEEe
Q 015912 195 RIPRVSEDMPLYDILNEFQKGHSHIAVVYK 224 (398)
Q Consensus 195 ~~~~V~~d~~l~daL~~m~~~~~~~apVVD 224 (398)
+++++++++++.+++..|.+.+.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999999999885
No 63
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.38 E-value=4.1e-12 Score=105.42 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=79.6
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc--------------cccchhhhccCCc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD--------------AVPLRKMIIRRIP 197 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~--------------~~~V~eIM~r~~~ 197 (398)
++.+++.+.++. ++++.|.+.++..+||+++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999999 9999999999999999986 8999999999998754221 2467888888899
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++++.+++..|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVDD 106 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEECC
Confidence 9999999999999999999999999987
No 64
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=2.8e-12 Score=110.00 Aligned_cols=92 Identities=14% Similarity=0.286 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc--------------------------ccc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY--------------------------RDA 185 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~--------------------------~~~ 185 (398)
++.++++++++. ++++.|.++++.++||++++ ++++|+++.+|++.... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 567899999999 99999999999999999865 89999999999875321 123
Q ss_pred ccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 186 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 186 ~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.++.++|..++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~ 120 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG 120 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC
Confidence 4688998888999999999999999999999999999985
No 65
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.38 E-value=4.3e-12 Score=104.31 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=79.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc-c---ccccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DAVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~-~---~~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++.+++.+.++. ++.+.|.+.+++++||+++ ++++|+++.+|++.... . ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 467789999999 9999999999999999986 89999999999875321 1 135788998889999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+.+.+.+||+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 79 ALLLMLERGIHHLPVVDD 96 (111)
T ss_pred HHHHHHHcCCCeeeEeEC
Confidence 999999999999999986
No 66
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.37 E-value=4.9e-12 Score=103.67 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=76.8
Q ss_pred EEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHH
Q 015912 134 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 213 (398)
Q Consensus 134 vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~ 213 (398)
.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|++.... .++.++|..++.+++++.++.+++..|.
T Consensus 4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~ 77 (104)
T cd04594 4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM 77 (104)
T ss_pred eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence 3688999999 9999999999999999985 89999999999986532 2578888888999999999999999999
Q ss_pred hCCCcEEEEEec
Q 015912 214 KGHSHIAVVYKD 225 (398)
Q Consensus 214 ~~~~~~apVVDe 225 (398)
+++.+.+||+|+
T Consensus 78 ~~~~~~~~Vv~~ 89 (104)
T cd04594 78 KNKTRWCPVVDD 89 (104)
T ss_pred HcCcceEEEEEC
Confidence 999999999976
No 67
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.37 E-value=4.3e-12 Score=105.53 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=78.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCC--CCcEEEEEEchhhhcccccccccchhhhccCCcEEcC--CCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSE--DMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~--d~~l~d 207 (398)
++.++..++++. ++++.|.+++++.+||+|+. .++++|+++.+|++.... ...+++++|...+..+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 456789999999 99999999999999999861 389999999999875432 234688998777777766 999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+++.+.+||+|+
T Consensus 81 ~l~~~~~~~~~~~pVv~~ 98 (114)
T cd04602 81 ANEILRESKKGKLPIVND 98 (114)
T ss_pred HHHHHHhcCCCceeEECC
Confidence 999999999999999987
No 68
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.37 E-value=3.9e-12 Score=104.71 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=79.7
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+++++..... ..++.++|..++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455688999999 89999998899999999875 8999999999987654321 24699998888899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~~~~~~~~Vv~~ 98 (114)
T cd04604 81 ALELMEENKITALPVVDD 98 (114)
T ss_pred HHHHHHHcCCCEEEEECC
Confidence 999999999999999986
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=5.8e-12 Score=104.38 Aligned_cols=91 Identities=14% Similarity=0.327 Sum_probs=76.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhccCCcEEcCC--CC
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSED--MP 204 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r~~~~V~~d--~~ 204 (398)
++.+++.+.++. ++++.|.+++ +..+||+++ ++++|+|+.+|+++....+ ..++.++|.+++.+++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 345789999999 9999998888 667787774 7999999999998643221 357889988888889887 78
Q ss_pred HHHHHHHHHhCCCcEEEEEec
Q 015912 205 LYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 205 l~daL~~m~~~~~~~apVVDe 225 (398)
+.++++.|.+++.+.+||+|+
T Consensus 79 l~~a~~~~~~~~~~~~pVvd~ 99 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLDD 99 (115)
T ss_pred HHHHHHHHHHhCCceEEEEcC
Confidence 999999999999999999987
No 70
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.36 E-value=7.5e-12 Score=131.75 Aligned_cols=136 Identities=9% Similarity=0.091 Sum_probs=101.8
Q ss_pred cccHHHHHHHHHhhccccccCCCC-CHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceec
Q 015912 81 LLRRAELKTFVNFHGNEAGKGGDL-THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 159 (398)
Q Consensus 81 ~~s~eEL~~Lv~l~~~e~~e~G~L-~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlP 159 (398)
..++.++-..+...+--+-=.... .++.+..++.++.+. ..|++ +++++++++|+. ++++.|.+++++.+|
T Consensus 64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lp 135 (505)
T PLN02274 64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVC 135 (505)
T ss_pred ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence 456667766555321000000012 334557777777542 22664 678999999999 999999999999999
Q ss_pred cccCC--CCcEEEEEEchhhhcccccccccchhhhccC--CcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 160 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRR--IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 160 Vvd~d--~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~--~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
|++++ .++++|+|+.+|+.... ....+|.++|.++ ++++++++++.++++.|.+++.+.+||+|+
T Consensus 136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~ 204 (505)
T PLN02274 136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE 204 (505)
T ss_pred EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 99863 27899999999997543 3356899999866 779999999999999999999999999987
No 71
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.36 E-value=5.5e-12 Score=104.43 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=76.3
Q ss_pred ccEEEEeCCCChHHHHHHHHHHcCCceeccccCC--CCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHH
Q 015912 131 SKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDI 208 (398)
Q Consensus 131 ~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~da 208 (398)
+++..++++.++. ++.+.+.+.+++++||+++. .++++|+|+.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3677899999999 99999999999999999862 3889999999999865422 778888999999999999
Q ss_pred HHHHHhCCCcEEEEEec
Q 015912 209 LNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 209 L~~m~~~~~~~apVVDe 225 (398)
++.|++++.+.+||+++
T Consensus 74 ~~~~~~~~~~~~pVv~~ 90 (105)
T cd04591 74 HQLFRKLGLRHLLVVDE 90 (105)
T ss_pred HHHHHHcCCCEEEEEEC
Confidence 99999999999999965
No 72
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=7.6e-12 Score=102.07 Aligned_cols=79 Identities=8% Similarity=0.172 Sum_probs=71.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++.... +.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence 467899999999 99999999999999999875 89999999999986431 6789999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+++.+.+||+|+
T Consensus 67 m~~~~~~~lpVv~~ 80 (96)
T cd04614 67 MKRNRIEQIPIING 80 (96)
T ss_pred HHHhCCCeeeEECC
Confidence 99999999999987
No 73
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1e-11 Score=101.55 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=79.4
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNE 211 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~ 211 (398)
+++++..+.++. ++++.|.+.+++++||++++ ++++|+++.++++.... ..++.++|..++.++++++++.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 467899999999 89999999999999999876 88999999999986532 236788888889999999999999999
Q ss_pred HHhCCCcEEEEEec
Q 015912 212 FQKGHSHIAVVYKD 225 (398)
Q Consensus 212 m~~~~~~~apVVDe 225 (398)
|.+.+.+.+||+|+
T Consensus 78 ~~~~~~~~~~Vvd~ 91 (106)
T cd04638 78 MVENNIRRVPVVDD 91 (106)
T ss_pred HHHcCCCEEEEEEC
Confidence 99999999999986
No 74
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.35 E-value=5.6e-12 Score=103.77 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc-c---cc-ccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-R---DA-VPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~-~---~~-~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.++..+.++. ++++.|.+++.+++||+++ ++++|+|+.+|++.... . .. .++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 456789999999 8999999999999999985 89999999999874221 1 12 578899888889999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHHHHHHcCCCcccEECC
Confidence 9999999999999999987
No 75
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=6.3e-12 Score=105.23 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=79.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc--------------ccccchhhhccCCc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 197 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~--------------~~~~V~eIM~r~~~ 197 (398)
++.++++++++. ++++.|.+.+++++||+++ ++++|+++.+|+++.... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 467899999999 9999999999999999985 799999999999764211 12468888888999
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++++.++++.|.+++...+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~~ 106 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVDE 106 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEECC
Confidence 9999999999999999999999999987
No 76
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=4.1e-12 Score=133.60 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCC--CCcEEEEEEchhhhccccc
Q 015912 106 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN--PTNIIGLILVKNLLSVDYR 183 (398)
Q Consensus 106 ~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d--~~~IVGIVs~kDLl~~~~~ 183 (398)
+++++++..+-++.. ..++.| .++++++|+. ++++.|.+++++.+||+|++ .++++|+|+.+|+......
T Consensus 87 e~qa~lV~kVk~~~~---g~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~ 158 (502)
T PRK07107 87 ESEAAMVRRVKNYKA---GFVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMS 158 (502)
T ss_pred HHHHHHHHHHHHHhc---CCcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccC
Confidence 455655555544332 222322 4799999999 99999999999999999862 3799999999999754323
Q ss_pred ccccchhhhcc--CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 184 DAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 184 ~~~~V~eIM~r--~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+.+|+++|.. +++++++++++.++++.|.+++.+.+||+|+
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~ 202 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK 202 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 35689999976 6788999999999999999999999999987
No 77
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.33 E-value=5.8e-12 Score=130.50 Aligned_cols=101 Identities=20% Similarity=0.369 Sum_probs=85.3
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----ccccchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMII 193 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~----~~~~V~eIM~ 193 (398)
|..++|+++|.+ ++.++.+++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++.... ...++.++|.
T Consensus 332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~ 407 (454)
T TIGR01137 332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS 407 (454)
T ss_pred hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence 688999999985 688999999999 99999999999999999875 889999999999874322 1347999998
Q ss_pred cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 194 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 194 r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++.+|++++++.++++.|.+++ .. ||++
T Consensus 408 ~~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~ 436 (454)
T TIGR01137 408 KKFIQIGEGEKLSDLSKFLEKNS--SA-IVTE 436 (454)
T ss_pred CCCeEECCcCcHHHHHHHHHHCC--ee-EEEE
Confidence 88889999999999999998864 34 4544
No 78
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.1e-11 Score=102.02 Aligned_cols=91 Identities=11% Similarity=0.189 Sum_probs=77.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-----ccccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-----DAVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-----~~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.++++++++. ++++.|.++++..++|.+ + ++++|+++.+|+++.... ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567899999999 899999888887777765 3 899999999999865321 13578999888888999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++...+||+|+
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred HHHHHHHHcCCCeeeEEEC
Confidence 9999999999999999986
No 79
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.33 E-value=1.2e-11 Score=102.95 Aligned_cols=92 Identities=11% Similarity=0.193 Sum_probs=79.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc-------------cccccchhhhccCCcE
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-------------RDAVPLRKMIIRRIPR 198 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~-------------~~~~~V~eIM~r~~~~ 198 (398)
++.+++.++++. ++++.|.+.+++++||++++ ++++|+|+.+|+.+... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456789999999 99999999999999999876 89999999999876431 1135688998888999
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++++++.++++.|.+++.+.+||+|+
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 999999999999999999999999986
No 80
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.2e-11 Score=101.90 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=79.0
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc-----cccccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY-----RDAVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~-----~~~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456789999999 9999999999999999986 48999999999986431 123578899888888999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~ 97 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVDD 97 (112)
T ss_pred HHHHHHHHcCCCeeEEeeC
Confidence 9999999999999999987
No 81
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.5e-11 Score=101.17 Aligned_cols=91 Identities=13% Similarity=0.247 Sum_probs=78.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc-ccc----ccccchhhhccCCcEEcCCCCHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV-DYR----DAVPLRKMIIRRIPRVSEDMPLY 206 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~-~~~----~~~~V~eIM~r~~~~V~~d~~l~ 206 (398)
++.+++.++++. ++.+.|.+++++.+||+++ ++++|+++.+|++.. ... ...++.++|.+.+.++.+++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 467799999999 9999999999999999986 899999999998632 111 12348899888899999999999
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 015912 207 DILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 207 daL~~m~~~~~~~apVVDe 225 (398)
++++.|.+.+.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~~~V~~~ 97 (113)
T cd04622 79 EAARLMREHQVRRLPVVDD 97 (113)
T ss_pred HHHHHHHHcCCCeeeEECC
Confidence 9999999999999999987
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.32 E-value=2.3e-11 Score=127.14 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=88.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEE
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 199 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V 199 (398)
..++.++|+. +++++.+++++. ++++.|.+++++.+||+++ ++++|+|+.+|+..... ..++.++|.++++++
T Consensus 87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~~--~~~V~dIMt~~litv 159 (475)
T TIGR01303 87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVDR--FTQVRDIMSTDLVTA 159 (475)
T ss_pred hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCCC--CCCHHHHccCCceEe
Confidence 5567889985 668899999999 9999999999999999875 68999999999976533 357999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 200 SEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 200 ~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++.++++.|.+++.+.+||+|+
T Consensus 160 ~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 160 PADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 99999999999999999999999987
No 83
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.30 E-value=2e-11 Score=99.66 Aligned_cols=89 Identities=22% Similarity=0.437 Sum_probs=75.1
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc----cccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD----AVPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~----~~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++.+++.++++. ++++.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 356789999999 9999999999999999986 7999999999998764322 25688898888899999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+ .. .+||+++
T Consensus 79 ~~~~~~~-~~-~~~vv~~ 94 (110)
T cd04609 79 LSELLDR-GN-VAVVVDE 94 (110)
T ss_pred HHHHHHh-CC-ceeEEec
Confidence 9999988 33 4788877
No 84
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.30 E-value=1.6e-11 Score=129.10 Aligned_cols=136 Identities=9% Similarity=0.173 Sum_probs=102.0
Q ss_pred cccHHHHHHHHHhhccccccCCCCCH-HHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceec
Q 015912 81 LLRRAELKTFVNFHGNEAGKGGDLTH-DETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 159 (398)
Q Consensus 81 ~~s~eEL~~Lv~l~~~e~~e~G~L~~-eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlP 159 (398)
.+++.++-..+...+--+-=.+.++. ++.+.++.+.+ +++.|++ +++++++++|+. +++++|.+++++.+|
T Consensus 60 ~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vp 131 (495)
T PTZ00314 60 TVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSIL 131 (495)
T ss_pred ccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEE
Confidence 45666766555532211000112333 44566666654 4456764 567899999999 999999999999999
Q ss_pred cccCC--CCcEEEEEEchhhhcccccccccchhhhcc--CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 160 VYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 160 Vvd~d--~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r--~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
|++++ .++++|+|+.+|+.... ....+|+++|.+ +++++++++++.++++.|.+++.+.+||+|+
T Consensus 132 Vvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~ 200 (495)
T PTZ00314 132 ITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND 200 (495)
T ss_pred EEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC
Confidence 99863 37899999999997543 234689999876 7889999999999999999999999999998
No 85
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=1.8e-11 Score=102.15 Aligned_cols=91 Identities=15% Similarity=0.304 Sum_probs=79.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc--------------ccccchhhhccCCc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------DAVPLRKMIIRRIP 197 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~--------------~~~~V~eIM~r~~~ 197 (398)
++.+++.++++. ++++.|.+.+++++||+++ ++++|+++..|++..... ...++.++|..++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456789999999 9999999999999999985 899999999999764321 13468888888899
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++++.+++..|.+.+.+.+||+|+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 9999999999999999999999999987
No 86
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.28 E-value=3.8e-11 Score=96.78 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=79.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-c---ccchhhhccCCcEEcCCCCHHH
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-A---VPLRKMIIRRIPRVSEDMPLYD 207 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-~---~~V~eIM~r~~~~V~~d~~l~d 207 (398)
++..++.+.++. ++++.|.+.+++++||++++ ++++|+++.+|++...... . ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456789999999 99999999999999999876 8999999999998765332 1 1256788889999999999999
Q ss_pred HHHHHHhCCCcEEEEEec
Q 015912 208 ILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 208 aL~~m~~~~~~~apVVDe 225 (398)
+++.|.+.+.+.++|+|+
T Consensus 80 ~~~~~~~~~~~~~~V~~~ 97 (113)
T cd02205 80 AAELMLEHGIRRLPVVDD 97 (113)
T ss_pred HHHHHHHcCCCEEEEEcC
Confidence 999999999999999987
No 87
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.28 E-value=3.2e-11 Score=99.63 Aligned_cols=97 Identities=24% Similarity=0.393 Sum_probs=84.9
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccccc--c-cchhhhccCCcEEc
Q 015912 124 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA--V-PLRKMIIRRIPRVS 200 (398)
Q Consensus 124 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~--~-~V~eIM~r~~~~V~ 200 (398)
.++|. .+++++.++.++. ++...|.+++++++||+++ ++++|+++.+|++++..... . ++.++|.+++.++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34555 4788999999999 9999999999999999975 37999999999998765431 2 58999888999999
Q ss_pred CCCCHHHHHHHHHh-CCCcEEEEEec
Q 015912 201 EDMPLYDILNEFQK-GHSHIAVVYKD 225 (398)
Q Consensus 201 ~d~~l~daL~~m~~-~~~~~apVVDe 225 (398)
++.++.++++.|.+ ++.+.+||+|+
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~~ 102 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVDD 102 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEEC
Confidence 99999999999999 79999999998
No 88
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.26 E-value=1.5e-11 Score=118.31 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=90.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc---ccccchhhhccCCc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---DAVPLRKMIIRRIP 197 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---~~~~V~eIM~r~~~ 197 (398)
++|+++|.+. ++.++++++++. ++++.|.+.+++.+||+|++ ++++|+|+.+|+++.... ...+++++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999863 277899999999 99999999999999999876 899999999999875322 24679999989999
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++++.++++.|.+++.+.+||+|+
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 9999999999999999999999999987
No 89
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=4.4e-11 Score=104.27 Aligned_cols=91 Identities=16% Similarity=0.308 Sum_probs=78.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----------------------------
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR---------------------------- 183 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~---------------------------- 183 (398)
++++++.++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 467899999999 9999999999999999985 799999999998754211
Q ss_pred --------ccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 184 --------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 184 --------~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
...++.++|.+++.++++++++.+++..|.+.+.+.+||+++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 124577888888999999999999999999999999999986
No 90
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=5.3e-11 Score=98.98 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=75.2
Q ss_pred cEEEEeCCCChHHHHHHHHHHcC-CceeccccCCCCcEEEEEEchhhhccccc-------ccccchhhhccCCcEEcCCC
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMG-HSRVPVYSGNPTNIIGLILVKNLLSVDYR-------DAVPLRKMIIRRIPRVSEDM 203 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~-~srlPVvd~d~~~IVGIVs~kDLl~~~~~-------~~~~V~eIM~r~~~~V~~d~ 203 (398)
++.++++++++. ++++.|...+ ++.+||+++ ++++|+|+.+|+++.... ...++.++|..++.++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345688999999 9999998887 899999986 899999999999754321 23578999888899999999
Q ss_pred CHHHHHHHHHhCCCc---EEEEEec
Q 015912 204 PLYDILNEFQKGHSH---IAVVYKD 225 (398)
Q Consensus 204 ~l~daL~~m~~~~~~---~apVVDe 225 (398)
++.+++..|.+++.. ..+|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~~ 103 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVTE 103 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEee
Confidence 999999999988753 3467776
No 91
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.18 E-value=4.5e-11 Score=124.26 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc----ccccchhhh
Q 015912 117 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR----DAVPLRKMI 192 (398)
Q Consensus 117 ~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~----~~~~V~eIM 192 (398)
++--.+|+++|+. ..+++++.+++. +|.+.|.+.|.+.+.|++++ +...|||+.+|+....-. ...+|+++|
T Consensus 145 e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evm 220 (610)
T COG2905 145 EFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVM 220 (610)
T ss_pred hHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhh
Confidence 3445678999985 567899999999 99999999999988888876 899999999999865322 267899999
Q ss_pred ccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 193 IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 193 ~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.|+++|..++.+.+|+-.|.+++++++||.++
T Consensus 221 T~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 221 TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred ccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 999999999999999999999999999999976
No 92
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.08 E-value=4.3e-10 Score=98.00 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccccc---c------------cchhhh----
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDA---V------------PLRKMI---- 192 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~---~------------~V~eIM---- 192 (398)
++.++.+++++. ++++.|.+++++.+||+|++ ++++|+|+.+|+++...... . .+.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 567899999999 99999999999999999876 89999999999987543221 0 133454
Q ss_pred -----ccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 193 -----IRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 193 -----~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.++++++.+++++.+|++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 367889999999999999999999999999997
No 93
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.01 E-value=2.3e-09 Score=113.95 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=50.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+|+++|++ ++.++++++++. ++++.|.+++++++||+|++ ++++|+|+.+|+.+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~ 122 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR 122 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence 3689999985 778999999999 99999999999999999976 89999999999864
No 94
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.78 E-value=2.3e-08 Score=73.62 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=36.1
Q ss_pred chhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 188 LRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 188 V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
|+++|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~ 38 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE 38 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec
Confidence 46889999999999999999999999999999999988
No 95
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.64 E-value=2.9e-08 Score=73.01 Aligned_cols=55 Identities=29% Similarity=0.496 Sum_probs=50.7
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 123 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 123 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
|+++|++ ++.++++++++. ++++.|.+++++++||+|++ ++++|+++.+||+++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence 6799997 789999999999 99999999999999999876 9999999999998753
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.60 E-value=2.6e-07 Score=94.49 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=76.5
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----ccc-chhh------hccCCcEE
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVP-LRKM------IIRRIPRV 199 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----~~~-V~eI------M~r~~~~V 199 (398)
.+..+..+.++. ++++.|...+++.+||++.. ++.+|+++..|+.....+. ... +++. -..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588999999999 99999999999999999986 7789999999998654433 111 2222 12346889
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 200 SEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 200 ~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.++.++.+++..|..+++|.+.|||+
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcC
Confidence 99999999999999999999999998
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=8e-07 Score=91.51 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=80.5
Q ss_pred cccccccccCcc-EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEE
Q 015912 121 KTAKDAMTPISK-AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRV 199 (398)
Q Consensus 121 ~tV~dIMtPr~~-VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V 199 (398)
.++.++|.+... .+....+.+.. +++..|...+.+.+.|+|++ ++++|+|+.+++...... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 567888854221 12334666777 89999999999999999976 899999999999765433 246777777778899
Q ss_pred cCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 200 SEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 200 ~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++++++.+++..|.+.... +||||+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~~ 375 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVDE 375 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEECC
Confidence 9999999999999997766 899987
No 98
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.38 E-value=3.9e-06 Score=85.37 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=74.2
Q ss_pred EEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHH
Q 015912 134 FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQ 213 (398)
Q Consensus 134 vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~ 213 (398)
....++.+.. ++++.|...+.....|++++ +++.|+|+.+++....... ..+.+.|.....+|++++++.+++..|.
T Consensus 253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (363)
T TIGR01186 253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVL 329 (363)
T ss_pred eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHH
Confidence 3455677888 89999999999999999876 8999999999987654332 3577887778889999999999999999
Q ss_pred hCCCcEEEEEec
Q 015912 214 KGHSHIAVVYKD 225 (398)
Q Consensus 214 ~~~~~~apVVDe 225 (398)
+.+.. +||+|+
T Consensus 330 ~~~~~-~~v~~~ 340 (363)
T TIGR01186 330 KAGIK-VPVVDE 340 (363)
T ss_pred hCCCC-EEEECC
Confidence 99988 999997
No 99
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.36 E-value=5.8e-07 Score=94.88 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=85.2
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCC----CcEEEEEEchhhhcccc------c----
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP----TNIIGLILVKNLLSVDY------R---- 183 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~----~~IVGIVs~kDLl~~~~------~---- 183 (398)
+++.+|+|+|.+ ++++++.-..+. .+.+.++.+.|..+||+|+.. +++.|+|....++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 467789999986 899999999999 899999999999999998543 36789888877652110 0
Q ss_pred ----------------c----------------cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 184 ----------------D----------------AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 184 ----------------~----------------~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
. ..++..+|...|++|++++++..++..|+.-+.+++.||+.
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~ 729 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK 729 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC
Confidence 0 12344566667889999999999999999999999999986
No 100
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.33 E-value=1.4e-06 Score=88.11 Aligned_cols=137 Identities=11% Similarity=0.144 Sum_probs=105.2
Q ss_pred ccccHHHHHHHHHhhccccccCCCC-CHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCcee
Q 015912 80 VLLRRAELKTFVNFHGNEAGKGGDL-THDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRV 158 (398)
Q Consensus 80 ~~~s~eEL~~Lv~l~~~e~~e~G~L-~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srl 158 (398)
..+++.|.-..+.+++--+-=...- .++++.+++.+-.|.. .-++ +.+.+.++.|+. ++++.-..++++.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~---g~~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYEN---GFIN----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhc---cccc----CCcccCCcccch-hhhhhccccccccc
Confidence 3567777766666542111000111 4667888988887765 3333 345688999999 99999999999999
Q ss_pred ccccCC--CCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 159 PVYSGN--PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 159 PVvd~d--~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
||.++. ..+++|+|+-+|+-.. .+..+.+.++|+..+++.+...++.++-+.+++.+..-+||||+
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~ 210 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD 210 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc
Confidence 999632 2689999999998665 44467899999988899999999999999999999999999998
No 101
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.09 E-value=1.9e-06 Score=89.89 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=83.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcE
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPR 198 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~ 198 (398)
.+.+++++|++ +++++++++++. ++++.|.++++..+||+|++ |+++|+|+.+|++....+. ...++|.....+
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~ 266 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK 266 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence 55689999986 677899999999 99999999999999999876 8999999999999876554 346777666555
Q ss_pred EcCCCCHHHHHHHHHhCCCcEEEEE
Q 015912 199 VSEDMPLYDILNEFQKGHSHIAVVY 223 (398)
Q Consensus 199 V~~d~~l~daL~~m~~~~~~~apVV 223 (398)
..++..+.+++..|.+++...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHhccchHHHH
Confidence 5567788999999999999998875
No 102
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=1.4e-05 Score=66.02 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=49.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.. .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|+++
T Consensus 55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 3468999974 567899999999 99999999999999999876 89999999999975
No 103
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.85 E-value=2.9e-05 Score=63.46 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=51.3
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 117 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 117 ~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+...++.++|.+ .+.++.+++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 4455679999986 567899999999 99999999999999999865 89999999999975
No 104
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=4.6e-05 Score=63.96 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=49.3
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+|+++|.+ ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+||..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999985 677899999999 99999999999999999875 78999999999864
No 105
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.79 E-value=3.3e-05 Score=63.60 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=50.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.+...+.++.+++++. ++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence 467899998644567899999999 99999999999999999875 79999999999874
No 106
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.77 E-value=5.6e-05 Score=63.45 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=37.4
Q ss_pred ccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 186 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 186 ~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~ 97 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD 97 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC
Confidence 4689999889999999999999999999999999999987
No 107
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.74 E-value=4.6e-05 Score=73.38 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=38.9
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..+|.++|.++++++.+++++.++.+.|.+++++.+||+|+
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~ 211 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD 211 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC
Confidence 45789999999999999999999999999999999999997
No 108
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=5e-05 Score=63.30 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=51.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCC--CcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP--TNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~--~~IVGIVs~kDLl~ 179 (398)
+...+++++|+...++.++++++++. ++++.|.++++.++||++++. ++++|+|+.+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 34667889997423578999999999 999999999999999998652 58999999999875
No 109
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.73 E-value=4.8e-05 Score=63.02 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=50.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|.. ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 34678999974 677899999999 99999999999999999875 79999999999874
No 110
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.72 E-value=9.5e-05 Score=78.36 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCC-
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI- 196 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~- 196 (398)
..+.+|+++|++..+++++++++++. +++++|.+++...+||+|++ ++++|+|+.+|+++...... ...+-.-+-.
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~-a~~d~~grL~V 234 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPL-ELLDSSKRYVV 234 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChh-hhhhhccCeee
Confidence 45678999999766889999999999 99999999999999999875 78999999999987642211 1111101110
Q ss_pred -cEEcCCCCHHHHHHHHHhCCCcEEEE
Q 015912 197 -PRVSEDMPLYDILNEFQKGHSHIAVV 222 (398)
Q Consensus 197 -~~V~~d~~l~daL~~m~~~~~~~apV 222 (398)
..+... ...+.++.+.+.+.+.+.|
T Consensus 235 ~~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 235 GAGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred eeccChh-hHHHHHHHHHHhCCCeEee
Confidence 112222 3445666677778777654
No 111
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.71 E-value=3.7e-05 Score=81.95 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=80.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc---------------
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR--------------- 183 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~--------------- 183 (398)
...+|+++|+. .++.++++++++. ++.+.|.++++..+||+|++ |+++|+|+.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 35789999982 3788999999999 99999999999999999976 899999999999864321
Q ss_pred -----------ccccchhhhccCCcEE---cCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 184 -----------DAVPLRKMIIRRIPRV---SEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 184 -----------~~~~V~eIM~r~~~~V---~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+..++.++|.+.+..+ +...+...+.+.|++.+....+++..
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~ 376 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG 376 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH
Confidence 0123556666665544 44566677888899888887776643
No 112
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00014 Score=77.43 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=78.4
Q ss_pred ccccccccCc---cEEEEeCC-CChHHHHHHHHHHcCCceeccc-cCCCCcEEEEEEchhhhcccc------c-------
Q 015912 122 TAKDAMTPIS---KAFSLDLD-ATLTLDTLNAIMTMGHSRVPVY-SGNPTNIIGLILVKNLLSVDY------R------- 183 (398)
Q Consensus 122 tV~dIMtPr~---~VvtV~~d-~tv~~eal~~m~~~~~srlPVv-d~d~~~IVGIVs~kDLl~~~~------~------- 183 (398)
-..++|.|+. ....+..+ ++++ +...+|.++.|+.+||+ +++..+++|+|..||+..... +
T Consensus 544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~ 622 (696)
T KOG0475|consen 544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI 622 (696)
T ss_pred hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence 3456665543 35555555 8999 99999999999999988 455678999999999864211 0
Q ss_pred --------------ccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 184 --------------DAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 184 --------------~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
....++++|.-.+.+|...++...++++|++-+.+...|..+
T Consensus 623 ~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~ 678 (696)
T KOG0475|consen 623 YFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN 678 (696)
T ss_pred ccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence 023467787777889999999999999999999988887543
No 113
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.68 E-value=7.5e-05 Score=61.37 Aligned_cols=56 Identities=14% Similarity=0.354 Sum_probs=49.3
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3568899975 567899999999 99999999999999999865 89999999999874
No 114
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.64 E-value=9.6e-05 Score=60.83 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCC--CChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLD--ATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d--~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.++.++ +++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 34678899975 56778877 6888 89999999999999999876 89999999999976
No 115
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.58 E-value=0.0001 Score=60.22 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=42.0
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.+++++. ++++.|.+++..++||++++.|+++|+|+.+|+++
T Consensus 52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 67899999999 99999999999999999864478999999999975
No 116
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.58 E-value=0.00011 Score=60.57 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=51.3
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+...++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 355779999975 678899999999 99999999999999999875 89999999999875
No 117
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.54 E-value=0.00013 Score=59.54 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=49.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.++.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 678999964 567899999999 99999999999999999876 89999999999874
No 118
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00013 Score=60.73 Aligned_cols=59 Identities=20% Similarity=0.445 Sum_probs=51.7
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
....+++++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.+
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~~ 124 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIAA 124 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhcC
Confidence 456679999975 678899999999 99999999999999999865 899999999999753
No 119
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.52 E-value=0.0011 Score=68.70 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=37.1
Q ss_pred cccchhhhcc--CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIR--RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r--~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.+++++|+. ++.+++.++++.++++.|.+++...+||.++
T Consensus 190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~ 232 (408)
T TIGR03520 190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE 232 (408)
T ss_pred CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC
Confidence 4579999875 6889999999999999999999999999976
No 120
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.52 E-value=0.0002 Score=57.86 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=47.7
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 122 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 122 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+++++|.+ .+..+.+++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47899976 456799999999 99999999999999999875 78999999999874
No 121
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.52 E-value=0.00021 Score=58.33 Aligned_cols=55 Identities=16% Similarity=0.377 Sum_probs=48.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.. .+.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4579999964 567899999999 9999999999999999974 78999999999975
No 122
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.51 E-value=0.00016 Score=58.48 Aligned_cols=56 Identities=20% Similarity=0.418 Sum_probs=49.2
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+..++++|.+ .+.++.+++++. ++++.|.+++..++||++++ |+++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3568999975 467899999999 99999999999999999876 89999999999875
No 123
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.51 E-value=0.00044 Score=70.99 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHhhccccccCCCCCHHHHHHHHHHhcCccccccc--ccccCccEEEEeCCCChHHHHHHHHHHcCCceec
Q 015912 82 LRRAELKTFVNFHGNEAGKGGDLTHDETTIIAGALELTEKTAKD--AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVP 159 (398)
Q Consensus 82 ~s~eEL~~Lv~l~~~e~~e~G~L~~eE~~~I~~~l~L~~~tV~d--IMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlP 159 (398)
++-.++...+.... .. .++.+..+.+....-.....+.. -++.+...+++.+..++- ++...+.++++.|+|
T Consensus 116 ~~~~d~i~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvp 189 (381)
T KOG1764|consen 116 LTITDFITVLLRYY---KS--KSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLL-DAVLLLIKSRIHRVP 189 (381)
T ss_pred EEHHHHHHHHHHhh---cc--CCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHH-HHHHHHHhCCcccee
Confidence 45555555554311 11 13444444444444444444422 244444558899999998 899999999999999
Q ss_pred cccCCCCcEEEEEEchhhhcccccc----------cccchhh---hccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 160 VYSGNPTNIIGLILVKNLLSVDYRD----------AVPLRKM---IIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 160 Vvd~d~~~IVGIVs~kDLl~~~~~~----------~~~V~eI---M~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
|.|.+.++++.+++.+-++...... ..++.++ +...+.++.+++++.+|++.|..+++.-+||||+
T Consensus 190 v~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~ 268 (381)
T KOG1764|consen 190 VIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE 268 (381)
T ss_pred eecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC
Confidence 9995568999999999998764321 1222222 1234778999999999999999999999999998
No 124
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.51 E-value=9.8e-05 Score=72.47 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=38.8
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..+..+||.+++++|++++++.++.++|++++++.+||+|+
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~ 284 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE 284 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence 44678999999999999999999999999999999999998
No 125
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.50 E-value=0.00024 Score=74.98 Aligned_cols=96 Identities=10% Similarity=0.175 Sum_probs=72.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhh----hccCC
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKM----IIRRI 196 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eI----M~r~~ 196 (398)
..++++|++ ++.++++++++. ++++.|.+++...+||+|++ ++++|+|+.+||++..... ++.+. +....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999985 788999999999 99999999999999999876 7999999999999864332 22111 11112
Q ss_pred cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 197 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 197 ~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.......+.+..|.+.+... +|+|-
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEec
Confidence 223345678888888888888 56674
No 126
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=9.1e-05 Score=62.53 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.9
Q ss_pred cccccccccccCccEEEEe----CCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLD----LDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~----~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|.+...++.++ +++++. ++++.|.+++.+++||++++.++++|+|+.+|+++
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4567999997533333443 688998 89999999999999999864358999999999875
No 127
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00016 Score=59.65 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=49.6
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|.. ++.++++++++. ++++.|.+++...+||+++ ++++|+|+..|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 44678999964 678999999999 9999999999999999986 78999999999875
No 128
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.00018 Score=58.77 Aligned_cols=57 Identities=18% Similarity=0.391 Sum_probs=50.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35679999975 577899999999 99999999999999999865 79999999999875
No 129
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.47 E-value=0.00019 Score=60.07 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=45.6
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhh
Q 015912 123 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLL 178 (398)
Q Consensus 123 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl 178 (398)
+.++|.+ ++.+++++.++. ++++.|.+++.+++||++++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3457764 678899999999 99999999999999999876 7899999999985
No 130
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.45 E-value=0.00011 Score=66.28 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=37.3
Q ss_pred ccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 186 VPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 186 ~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
...+.+|.+|+++|.+++++.++++.|++++...+||+++
T Consensus 65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~ 104 (187)
T COG3620 65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE 104 (187)
T ss_pred EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC
Confidence 3567789999999999999999999999999999999987
No 131
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.44 E-value=0.00015 Score=72.06 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=52.0
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
+.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||+++ ++++|+|+.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999986 678999999999 9999999999999999974 689999999999865
No 132
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.44 E-value=0.00019 Score=58.49 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=49.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..++.++|.+ ++.++++++++. ++++.|.+.+...+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4789999986 567899999999 99999999999999999761278999999999875
No 133
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.42 E-value=0.00048 Score=73.15 Aligned_cols=116 Identities=11% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 102 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 102 G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
|.++..+...+. -.+.+|.++|++...++++++++++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..
T Consensus 148 GIVT~~DL~~v~----~~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 148 GYVTKRDWDFVN----DRETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVK 221 (505)
T ss_pred EEEEHHHHhhcc----ccCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHh
Confidence 445555543221 34678999999865688999999999 99999999999999999875 7899999999998764
Q ss_pred cccc--ccchhhhccCC---cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 182 YRDA--VPLRKMIIRRI---PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 182 ~~~~--~~V~eIM~r~~---~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.-.. .+..+= .... ..|.....-.+-++.+.+.+...+. +|-
T Consensus 222 ~~p~~~~~~~d~-~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~-iD~ 268 (505)
T PLN02274 222 GYPKLGKPSVGK-DGKLLVGAAIGTRESDKERLEHLVKAGVDVVV-LDS 268 (505)
T ss_pred hCcCccccccCC-CCCEEEEEEEcCCccHHHHHHHHHHcCCCEEE-EeC
Confidence 3210 111111 0111 1244334445666677777777654 454
No 134
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.42 E-value=0.00024 Score=57.99 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=49.0
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..++.++|.+ .+.++.+++++. ++++.|...+..++||++++ ++++|+++.+|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 3458999975 577899999999 99999999999999999865 89999999999875
No 135
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.41 E-value=0.00025 Score=58.03 Aligned_cols=57 Identities=14% Similarity=0.341 Sum_probs=49.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.+++.++++. ++++.|.+++..++||++++ |+++|+++..|+++
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 45678899975 678899999999 99999999999999999865 79999999999874
No 136
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.41 E-value=0.00024 Score=70.47 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=51.6
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
.+.+|+++|++ ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 34569999986 677899999999 99999999999999999876 799999999999865
No 137
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.40 E-value=0.00025 Score=57.69 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=49.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+++++|.+ .+.+++++.++. ++++.|.+.+.+++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 5678999975 678899999999 9999999999999999986 79999999999875
No 138
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.00022 Score=59.37 Aligned_cols=57 Identities=16% Similarity=0.405 Sum_probs=50.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45678899975 678999999999 99999999999999999875 78999999999975
No 139
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.39 E-value=0.00043 Score=73.13 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccc---cchhhhccCC
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAV---PLRKMIIRRI 196 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~---~V~eIM~r~~ 196 (398)
..+++++|++ ..+++++++.++. ++++.|.+++...+||+|++ ++++|+|+.+||++....... .-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999983 3678999999999 99999999999999999976 899999999999875321110 0112222222
Q ss_pred cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 197 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 197 ~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.+.++ -.+.++.|.+.+.+.+ |+|.
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEE-EEEC
Confidence 333332 2788888999999955 6664
No 140
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.39 E-value=0.00053 Score=72.27 Aligned_cols=97 Identities=10% Similarity=0.166 Sum_probs=71.0
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCC---c
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRI---P 197 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~---~ 197 (398)
.+++++|++ +++++++++++. +++++|.+++...+||+|++ ++++|+|+.+||++..... +..+. .... -
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~-~grl~Vga 218 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDA-AGRLRIGA 218 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhh-ccCceehh
Confidence 579999985 688999999999 99999999999999999875 8899999999999754322 22211 1100 0
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
-+.......+.+..|.+.+...+ |+|-
T Consensus 219 av~~~~~~~~ra~~Lv~aGVd~i-~~D~ 245 (475)
T TIGR01303 219 AVGINGDVGGKAKALLDAGVDVL-VIDT 245 (475)
T ss_pred eeeeCccHHHHHHHHHHhCCCEE-EEeC
Confidence 13334556677777777777764 4564
No 141
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.38 E-value=0.0003 Score=57.94 Aligned_cols=57 Identities=23% Similarity=0.482 Sum_probs=48.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCC-CCcEEEEEEchhhhcc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSV 180 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d-~~~IVGIVs~kDLl~~ 180 (398)
.++.++|.+ .+.++.+++++. ++++.|.+++..++||++++ .++++|+|+.+|++++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 347888874 677899999999 99999999999999999764 2689999999998753
No 142
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.38 E-value=0.00054 Score=46.37 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=27.7
Q ss_pred CcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 196 IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 196 ~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.++++++++.++++.|.+.+.+.++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 31 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE 31 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC
Confidence 567899999999999999999999999987
No 143
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.37 E-value=0.00029 Score=57.53 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=48.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.+ .+.++.+++++. ++++.|.+++..++||+++ ++++|+|+..|++.
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4578899974 677899999999 9999999999999999986 78999999999874
No 144
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.0003 Score=57.38 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.++++++++. ++++.|.+++...+||++ + ++++|+|+.+|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678999975 677899999999 999999999999999998 4 79999999999874
No 145
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.36 E-value=0.00028 Score=60.15 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=50.7
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
....++.++|.+ ++.++.+++++. ++++.|.+.+.+++||++ + |+++|+|+.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 356789999975 678899999999 999999999999999998 4 89999999999875
No 146
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.36 E-value=0.00049 Score=56.38 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=47.8
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHH-cCCceeccccCCCC-cEEEEEEchhhh
Q 015912 122 TAKDAMTPISKAFSLDLDATLTLDTLNAIMT-MGHSRVPVYSGNPT-NIIGLILVKNLL 178 (398)
Q Consensus 122 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~-~~~srlPVvd~d~~-~IVGIVs~kDLl 178 (398)
++.++|+. .++++.++.++. ++.+.|.+ +++.++||++++ + +++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence 69999985 678999999999 99999999 799999999975 5 999999999974
No 147
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.36 E-value=0.00036 Score=56.61 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=48.5
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.++.++|.+ .+.++..++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 467888875 678899999999 99999999999999999875 89999999999875
No 148
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.34 E-value=0.00029 Score=58.16 Aligned_cols=57 Identities=14% Similarity=0.261 Sum_probs=46.8
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997643433334499998 99999999999999999865 78999999999874
No 149
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.33 E-value=0.00039 Score=56.33 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=47.1
Q ss_pred ccccccccccCccEEEEeC-CCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDL-DATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~-d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.. .+..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578999965 3444566 99998 99999999999999999875 79999999999874
No 150
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00035 Score=57.11 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=50.1
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
+.+++++|.+ .+..+.+++++. ++++.|.+.+...+||++++ ++++|+|+..|++..
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578999975 578899999999 99999999999999999875 899999999999854
No 151
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00033 Score=58.08 Aligned_cols=57 Identities=16% Similarity=0.402 Sum_probs=50.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
...++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ |+++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899964 578899999999 99999999999999999876 89999999999875
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.31 E-value=0.00067 Score=71.90 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=55.0
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
.+.+|+++|++..++++++++.++. +++++|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence 3567999999766889999999999 99999999999999999876 8899999999998763
No 153
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.31 E-value=0.00033 Score=60.45 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=49.7
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|++ ++..+.+++++. ++++.|.++++.++||+++ ++++|+|+.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 45689999975 567899999999 9999999999999999985 78999999999875
No 154
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00039 Score=57.67 Aligned_cols=58 Identities=14% Similarity=0.308 Sum_probs=50.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
....++.++|.. ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 356678899964 677899999999 99999999999999999875 79999999999875
No 155
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.30 E-value=0.00043 Score=57.64 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=45.2
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 124 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 124 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.++|.. ++.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus 68 ~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFE--GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ 119 (120)
T ss_pred cccCCC--CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence 455643 567899999999 99999999999999999876 89999999999875
No 156
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.29 E-value=0.00043 Score=55.95 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=48.6
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+.++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 468889975 677899999999 99999999999999999876 79999999999874
No 157
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.28 E-value=0.00046 Score=55.98 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=49.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ ++..+++++++. ++++.|.+.+...+||++++ ++++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 45678899975 678899999999 89999999999999999875 78999999999875
No 158
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.27 E-value=0.00042 Score=56.57 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|.+ ++..+++++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 45578999975 678899999998 9999999999999999975 78999999999875
No 159
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.27 E-value=0.00034 Score=57.92 Aligned_cols=57 Identities=16% Similarity=0.391 Sum_probs=50.4
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+...++.++|.+ ++.+++.++++. ++++.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678999975 677899999999 9999999999999999986 79999999999975
No 160
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.00044 Score=56.46 Aligned_cols=56 Identities=18% Similarity=0.437 Sum_probs=48.9
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ ++.++.+++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 45678999975 677899999999 9999999999999999986 38999999999874
No 161
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.25 E-value=0.00038 Score=59.09 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=49.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
...++.++|.+ ++..+.+++++. ++++.|.+.+..++||+++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34479999975 678899999999 9999999999999999986 79999999999875
No 162
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.24 E-value=0.0005 Score=55.89 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=47.2
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.++.++|.+ ...+++++.++. ++++.|.+++..++||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357888875 567899999999 9999999999999999973 89999999999874
No 163
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.24 E-value=0.00041 Score=56.71 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=49.3
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++.++|.+ .+.++.+++++. ++++.|.+++..++||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 58 GVATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CCccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 34678999975 567899999999 9999999999999999986 79999999999975
No 164
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00034 Score=57.39 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=47.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
.+.+++++|.+ .+.++++++++. ++++.|.+.+ .+||++++ ++++|+++.+|++++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~~ 116 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILKA 116 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhcC
Confidence 45679999986 577899999999 9999998755 58999865 899999999998753
No 165
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00046 Score=56.21 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=48.7
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+.++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468899964 678899999999 99999999999999999875 79999999999864
No 166
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.22 E-value=0.00043 Score=57.16 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=50.6
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
....++.++|.+ .+.+++.++++. ++++.|.+++++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999975 678899999999 9999999999999999975 78999999999875
No 167
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.21 E-value=0.00049 Score=55.37 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=48.7
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+|+.+|++.
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~ 104 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL 104 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence 4568899975 677899999999 9999999999999999985 89999999999873
No 168
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.17 E-value=0.00066 Score=54.98 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=41.8
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++++
T Consensus 51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~~ 96 (96)
T cd04614 51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLKP 96 (96)
T ss_pred cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhcC
Confidence 67899999999 99999999999999999875 799999999999753
No 169
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00098 Score=54.34 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=48.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.+++++|.+ ++.++..++++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468899875 577899999999 89999999999999999876 88999999999874
No 170
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.14 E-value=0.0015 Score=56.80 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 195 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 195 ~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+.++++++++.++++.|.+++...+||+|+
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~ 32 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS 32 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 4678999999999999999999999999997
No 171
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.0012 Score=53.75 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=47.3
Q ss_pred ccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 122 TAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 122 tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.++|.+ ++.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|+++
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47888864 577899999999 99999999999999999875 89999999999864
No 172
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.13 E-value=0.00087 Score=45.30 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=40.5
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
+.++.+++++. ++++.|.++++..+||++++ ++++|+++.+++++.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35688999999 99999999999999999875 789999999998754
No 173
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00081 Score=56.57 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=45.2
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 124 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 124 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus 74 ~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 345543 678899999999 99999999999999999876 89999999999875
No 174
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.11 E-value=0.00072 Score=55.08 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=48.8
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++.++|.. .+.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3578899964 678899999999 9999999999999999986 78999999999875
No 175
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.10 E-value=0.00065 Score=56.43 Aligned_cols=55 Identities=25% Similarity=0.419 Sum_probs=48.6
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 358888864 678899999999 99999999999999999875 79999999999875
No 176
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.00079 Score=56.60 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccC-CCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSG-NPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~-d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|++ ++.++.+++++. ++++.|.+++...+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999975 678899999999 9999999999999999853 3488999999999875
No 177
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.03 E-value=0.0011 Score=53.95 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.4
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.++.++|.+ .+..++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 568888864 678899999999 99999999999999999875 79999999999874
No 178
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.01 E-value=0.0028 Score=53.73 Aligned_cols=32 Identities=6% Similarity=-0.002 Sum_probs=29.5
Q ss_pred cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 194 RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 194 r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+++.++++++++.++++.|++++...+||+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~ 33 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE 33 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 56788999999999999999999999999987
No 179
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.00 E-value=0.0017 Score=67.42 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=37.6
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..+++++|.+++.++++++++.++++.|.+++...+||+|+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~ 374 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE 374 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 45788999899999999999999999999999999999987
No 180
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.97 E-value=0.00099 Score=54.24 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=46.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+.++|. .+.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.
T Consensus 57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence 34666664 357899999999 99999999999999999875 88999999999874
No 181
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.83 E-value=0.0024 Score=61.39 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=36.6
Q ss_pred ccchhhhccC-CcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 186 VPLRKMIIRR-IPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 186 ~~V~eIM~r~-~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+++++|.++ +.++++++++.++++.|.+.+...++|+|+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~ 195 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE 195 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC
Confidence 4688999888 899999999999999999999999999987
No 182
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.83 E-value=0.0035 Score=64.39 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=61.1
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccccc-ccccchhhhccCC
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYR-DAVPLRKMIIRRI 196 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~-~~~~V~eIM~r~~ 196 (398)
..-.+++++|.|...+ ...+.+ . +++ +++.+.+.|++. |+++..+...+... ....+.+ +....
T Consensus 271 ~~~l~a~~~m~~~~~~--~~~~~~-~--~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (382)
T TIGR03415 271 LNVLTARSLMRPLTDL--EHVDGG-W--CVS---DRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVES-LEAAP 335 (382)
T ss_pred ccceeHHHHhcccccc--cccCcc-h--hhh---hcccceeEeecc------ceecccchHhHhhcccccchhh-hcccC
Confidence 4456889999763322 233333 2 333 277888888864 88887776543221 2235666 47788
Q ss_pred cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 197 PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 197 ~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+|++++++.+++..+.+.... ++|+|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 363 (382)
T TIGR03415 336 TVINPDTLMRDVLAARHRTGGA-ILLVEN 363 (382)
T ss_pred cccCCCCcHHHHHHHHhcCCCC-eEEeeC
Confidence 8999999999999998887766 455666
No 183
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.81 E-value=0.0018 Score=53.16 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=43.6
Q ss_pred ccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 126 AMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 126 IMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+|+.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7864 577899999999 9999999999999999953 79999999999875
No 184
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.80 E-value=0.0015 Score=53.76 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=47.2
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCc---eeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHS---RVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~s---rlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
.+.+++++|.+ .+..+++++++. ++++.|.+++.. ..||++++ ++++|+|+.+|+++
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999975 678899999999 999999988753 44677765 89999999999875
No 185
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.69 E-value=0.0036 Score=67.38 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=37.9
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 446 ~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~ 486 (574)
T PRK01862 446 TTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD 486 (574)
T ss_pred hCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC
Confidence 45799999888999999999999999999999999999998
No 186
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.69 E-value=0.0025 Score=63.07 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=67.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---cc------cchhh
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---AV------PLRKM 191 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---~~------~V~eI 191 (398)
.+++++|.| ++++++++++. ++++.|++++...+||+|+. |.++|+|+..|++...... .. .+..+
T Consensus 133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~ 207 (292)
T PRK15094 133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL 207 (292)
T ss_pred CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe
Confidence 458899974 45799999999 99999999999999999975 7899999999998754321 11 12221
Q ss_pred hccCCcEEcCCCCHHHHHHHH
Q 015912 192 IIRRIPRVSEDMPLYDILNEF 212 (398)
Q Consensus 192 M~r~~~~V~~d~~l~daL~~m 212 (398)
....+.|+..+++.++.+.+
T Consensus 208 -~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 208 -SRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred -CCCeEEEEeccCHHHHHHHh
Confidence 23346799999999999887
No 187
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.63 E-value=0.0027 Score=67.18 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=62.6
Q ss_pred ccCCCCCHHHHHHHHHHhc---CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEch
Q 015912 99 GKGGDLTHDETTIIAGALE---LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVK 175 (398)
Q Consensus 99 ~e~G~L~~eE~~~I~~~l~---L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~k 175 (398)
...|.++ ++++..+++. -...+|+++||. ++++++..+-+- +|+-.|.++++.++||+++ |+++|+|+..
T Consensus 191 ~~~GIvT--~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~ 263 (610)
T COG2905 191 PLLGIVT--RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLT 263 (610)
T ss_pred Cccceee--hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHH
Confidence 3456555 4455666655 244689999995 899999999999 9999999999999999976 8999999999
Q ss_pred hhhcccc
Q 015912 176 NLLSVDY 182 (398)
Q Consensus 176 DLl~~~~ 182 (398)
||++...
T Consensus 264 dIl~l~s 270 (610)
T COG2905 264 DILRLFS 270 (610)
T ss_pred HHHHhhC
Confidence 9987643
No 188
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.57 E-value=0.0041 Score=53.87 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=49.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
...++.++|.+ .+.+++.++++. ++++.|.+.+++++||+++ ++++|+|+.+|++.
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 45678999975 678899999999 9999999999999999975 78999999999874
No 189
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.54 E-value=0.0063 Score=48.34 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=46.7
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 123 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 123 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
+.++|.. ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677864 677899999999 99999999999999999876 89999999999875
No 190
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.50 E-value=0.0037 Score=50.55 Aligned_cols=54 Identities=17% Similarity=0.320 Sum_probs=46.3
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
..+.++|.. .+.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 346778864 567789999999 9999999999999999984 68999999999875
No 191
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.47 E-value=0.0035 Score=65.67 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=53.4
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
.+.+++++|++ .++.+++++.++. ++++.|.+++...+||+|++ ++++|+|+.+|++...
T Consensus 141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence 35679999984 3688999999999 99999999999999999976 8999999999999764
No 192
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0092 Score=59.78 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=73.3
Q ss_pred HHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccccccc
Q 015912 109 TTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPL 188 (398)
Q Consensus 109 ~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V 188 (398)
++.++++=...-.++++||.+ .+......+..-...++..+...+.+.+-+++.. ++.+|+|+..++...
T Consensus 262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~g~v~~~~~~~~-------- 331 (386)
T COG4175 262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-NKFVGVVSIDSLVKA-------- 331 (386)
T ss_pred HHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhcc-CceeeEEeccchhcc--------
Confidence 455556655666789999985 3332222222222257788888887777777743 779999998877654
Q ss_pred hhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 189 RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 189 ~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
.+..++..++.++++.+.+....+...+.+ |+|+
T Consensus 332 --~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde 365 (386)
T COG4175 332 --ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDE 365 (386)
T ss_pred --cccccccccCccchHHHHHHHHhcCCCcee-EEcC
Confidence 346677889999999999999998887766 5677
No 193
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.37 E-value=0.012 Score=47.43 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 195 RIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 195 ~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
++.++.+++++.++++.|.+.+.+.+||+|+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~ 32 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD 32 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC
Confidence 4578999999999999999999999999987
No 194
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.014 Score=61.12 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=54.5
Q ss_pred cCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 117 ELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 117 ~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
.-.+..++++|.+ +++++.++++.+ ++.+++.+++...+||+|++ ++++|+|+..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4566789999986 488999999998 99999999999999999986 8999999999998654
No 195
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=95.02 E-value=0.022 Score=57.46 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=53.5
Q ss_pred CcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 118 LTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 118 L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
..+.++..+|+. ..+++.+.+|+. .+.+.|.-.++.-+||++++ .+++|+|+.+|++...
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 456788999995 578999999999 89999999999999999987 8899999999998764
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.17 E-value=0.079 Score=54.15 Aligned_cols=57 Identities=19% Similarity=0.464 Sum_probs=49.4
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 182 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~ 182 (398)
..+.+.|.+ .+.++++++++. +++..|.++++. +||+|++ ++++|+|+..+++....
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY 358 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 357888864 567899999999 999999999999 9999976 89999999999987643
No 197
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.052 Score=55.84 Aligned_cols=113 Identities=11% Similarity=0.176 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 102 GDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 102 G~L~~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
|.++..+.+.+ .=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ |++|-+++..||.+..
T Consensus 156 G~vtsrdi~f~----~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 156 GIITSRDIQFL----EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNR 227 (503)
T ss_pred EEEehhhhhhh----hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhhc
Confidence 34455555444 445677899999865 7899999999 89999999999999999986 9999999999998653
Q ss_pred c---cccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 182 Y---RDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 182 ~---~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
. .....-+++|.... +.-...=..-+.++.+.++..+ |+|.
T Consensus 228 ~yPlask~~~kqll~gAa--iGTre~dK~rl~ll~~aGvdvv-iLDS 271 (503)
T KOG2550|consen 228 DYPLASKDSTKQLLCGAA--IGTRDDDKERLDLLVQAGVDVV-ILDS 271 (503)
T ss_pred CCCccccCcccceeeeec--cccccchhHHHHHhhhcCCcEE-EEec
Confidence 1 11111223332222 2223333455666667776655 4454
No 198
>PRK11573 hypothetical protein; Provisional
Probab=92.93 E-value=0.24 Score=51.52 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=62.0
Q ss_pred cccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----c----ccchhhhccC
Q 015912 125 DAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----A----VPLRKMIIRR 195 (398)
Q Consensus 125 dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----~----~~V~eIM~r~ 195 (398)
++|. ++..|+++.++. ++++.|++++..-.-|+|+. |...|+||..|++.....+ . ..+..+ ...
T Consensus 259 ~~~r---~~~~Vpe~~~l~-~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~-~~~ 332 (413)
T PRK11573 259 RAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQ-NDG 332 (413)
T ss_pred hhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEe-cCC
Confidence 4553 467899999999 99999999988888888876 8999999999998753211 1 112221 223
Q ss_pred CcEEcCCCCHHHHHHHHH
Q 015912 196 IPRVSEDMPLYDILNEFQ 213 (398)
Q Consensus 196 ~~~V~~d~~l~daL~~m~ 213 (398)
.+.|+..+++.++-+.+.
T Consensus 333 ~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 333 SVIIDGTANVREINKAFN 350 (413)
T ss_pred EEEEEeeeEHHHHHHHhC
Confidence 466899999999998873
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.28 E-value=0.2 Score=51.84 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=48.5
Q ss_pred ccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccc
Q 015912 120 EKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDY 182 (398)
Q Consensus 120 ~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~ 182 (398)
...+.++|.+ .+.++++++++. +++..+.++.+. +||+|++ |+++|+|+..++++...
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3457777764 567899999999 999999987766 9999876 99999999999987754
No 200
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=89.42 E-value=0.88 Score=47.43 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=35.6
Q ss_pred cccchhhhc--cCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMII--RRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~--r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
+.+++++|+ .++.+++.+.++.++.+.+.+.+....||.++
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~ 247 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG 247 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC
Confidence 457888885 35678999999999999999999999999985
No 201
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.24 E-value=1.4 Score=43.36 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred EEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----------------cccchhhhccC
Q 015912 133 AFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----------------AVPLRKMIIRR 195 (398)
Q Consensus 133 VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----------------~~~V~eIM~r~ 195 (398)
++.|.-| ++ ||+++- +++-|.++ |+++=+=+..+++..+.++ ...+.+.|...
T Consensus 189 ivfVTHD--id-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHD--ID-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecC--HH-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 3444443 33 566543 46777764 8899888888887665432 12334443332
Q ss_pred C----cEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 196 I----PRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 196 ~----~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
. -.++......+++..+...+...+||+|+
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~ 292 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE 292 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEECC
Confidence 2 12445555667888888888999999988
No 202
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=79.62 E-value=4.9 Score=41.40 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred HhcCcccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc-----cccch
Q 015912 115 ALELTEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD-----AVPLR 189 (398)
Q Consensus 115 ~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~-----~~~V~ 189 (398)
+.+-++-+-.++|.--.+++.|++.+++. +-+..+++++-.--.|+|+- |.+.|+|+..|++.....+ .....
T Consensus 259 l~e~~~~~k~d~~~~a~epyFVPe~Tpl~-~QL~~F~~~k~hialVVDEY-G~i~GLVTLEDIlEEIVGdftde~d~~~~ 336 (423)
T COG4536 259 LNEKNEFTKEDILRAADEPYFVPEGTPLS-DQLVAFQRNKKHIALVVDEY-GDIQGLVTLEDILEEIVGDFTDEHDTLAK 336 (423)
T ss_pred hhccCcccHhHHHHHhcCCeecCCCCcHH-HHHHHHHHhcceEEEEEecc-CcEEeeeeHHHHHHHHhccccccCcccch
Confidence 33334355567775556789999999999 78888887766556677765 9999999999998643221 11222
Q ss_pred hhhc--cCCcEEcCCCCHHHHHHHHH
Q 015912 190 KMII--RRIPRVSEDMPLYDILNEFQ 213 (398)
Q Consensus 190 eIM~--r~~~~V~~d~~l~daL~~m~ 213 (398)
++.. ..-+.+..++++.|+=+.|.
T Consensus 337 ev~~q~dgs~iidGs~~iRdlNr~l~ 362 (423)
T COG4536 337 EVIPQSDGSFIIDGSANVRDLNRALD 362 (423)
T ss_pred hhcccCCCcEEEeCCCcHHHHHHhcC
Confidence 2210 11234667777766665553
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.05 E-value=9.6 Score=42.54 Aligned_cols=41 Identities=7% Similarity=0.207 Sum_probs=37.8
Q ss_pred cccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 185 AVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 185 ~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
...|.++|.+++.++..+++..|+-+.++....+..|+||.
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s 627 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES 627 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC
Confidence 46789999999999999999999999988887999999987
No 204
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=73.83 E-value=12 Score=36.71 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhcHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015912 21 SVTLILMFGEILPQAVCTRYGLTVGATMAPIVRVLLCLFFPISYPISKILDLMLG 75 (398)
Q Consensus 21 ~t~lilIFGEilPKsla~~~pe~ia~~~a~~l~~l~~l~~Plv~~l~~l~~~llg 75 (398)
.++++++|.=|+-|+ ++.++++-+|+|++++-.++.++..+
T Consensus 195 ~~~~~~i~~~Iltkt--------------Yi~YlliPiF~P~~~~Yg~~ynk~ck 235 (285)
T PF03563_consen 195 LTLIIFIFLIILTKT--------------YICYLLIPIFYPIAYLYGWLYNKSCK 235 (285)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666664 67778888999999999999887543
No 205
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=72.82 E-value=3.4 Score=44.99 Aligned_cols=54 Identities=15% Similarity=0.317 Sum_probs=46.3
Q ss_pred ccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 124 KDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 124 ~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
..+|.| ...++++++++. .+..+++.-|..++.|+... .+++|+++.+|+.+..
T Consensus 693 ~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 693 HPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARYR 746 (762)
T ss_pred ccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhHH
Confidence 456665 567899999999 89999999999999999875 7789999999998653
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=65.97 E-value=5 Score=44.63 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=48.5
Q ss_pred cccccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCC-CcEEEEEEchhhhccc
Q 015912 119 TEKTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNP-TNIIGLILVKNLLSVD 181 (398)
Q Consensus 119 ~~~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~-~~IVGIVs~kDLl~~~ 181 (398)
..+.|+++|.. ++.+|..+.|.. |..+.+.......+|++++.. --++|.|..+.|....
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll 646 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL 646 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence 34679999984 899999999999 887777766699999998542 3478999999987653
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=65.84 E-value=5.7 Score=41.00 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=38.9
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
++.++++++++. +++..+.++++. +||+++ |+++|+|+..+++...
T Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 334 APTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred cCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 567899999999 999988887765 778774 8999999999998654
No 208
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=63.51 E-value=14 Score=35.99 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=65.1
Q ss_pred cccccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcccccc---------cccchhh
Q 015912 121 KTAKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRD---------AVPLRKM 191 (398)
Q Consensus 121 ~tV~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~~~~---------~~~V~eI 191 (398)
-.++++..| .+.|++.-.+. ..++.++.+++...-|+|+- |-+-|+|+..|++.....+ ...++.+
T Consensus 133 F~i~~lLRP---av~VPESKrvd-~lLkeFR~~RnHMAIViDEf-GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~l 207 (293)
T COG4535 133 FDIKELLRP---AVVVPESKRVD-RLLKEFRSQRNHMAIVIDEF-GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQL 207 (293)
T ss_pred ccHHHhccc---ceecccchhHH-HHHHHHHhhcCceEEEEecc-CCeeeeEEHHHHHHHHhcccccccchhhhhhhHhh
Confidence 345666654 67899999999 89999998888888888875 8899999999998753221 2345554
Q ss_pred hccCCcEEcCCCCHHHHHHHHH
Q 015912 192 IIRRIPRVSEDMPLYDILNEFQ 213 (398)
Q Consensus 192 M~r~~~~V~~d~~l~daL~~m~ 213 (398)
.+.-+.|..-+++++-=..|.
T Consensus 208 -s~~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 208 -SRHTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred -cCCceEEEecccHHHHHHHhc
Confidence 566677888888887777664
No 209
>PF14163 SieB: Superinfection exclusion protein B
Probab=49.68 E-value=94 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHhcCcc
Q 015912 103 DLTHDETTIIAGALELTE 120 (398)
Q Consensus 103 ~L~~eE~~~I~~~l~L~~ 120 (398)
.|+++|+..+...+.-+.
T Consensus 78 ~Lt~~EkavL~~~~~~~~ 95 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN 95 (151)
T ss_pred hCCHHHHHHHHHHHHCCC
Confidence 389999999987775553
No 210
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=46.27 E-value=23 Score=35.08 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred cccccccccccCccE--EEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhc
Q 015912 119 TEKTAKDAMTPISKA--FSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLS 179 (398)
Q Consensus 119 ~~~tV~dIMtPr~~V--vtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~ 179 (398)
...++.+.|.+.... -.+....... +++..+...+.+.+||+|++ |+++|.|+..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 455677777653211 1122333444 67778888999999999987 99999999999874
No 211
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=40.89 E-value=24 Score=35.98 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=38.3
Q ss_pred cEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhccc
Q 015912 132 KAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVD 181 (398)
Q Consensus 132 ~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~~ 181 (398)
++.+++.++++. +.+..+.+.+. .+||+|++ ++++|++....++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~~-p~aVvde~-~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAPC-PVAVVDED-GRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCCC-ceeEEcCC-CcEEEEecHHHHHHHH
Confidence 567889999998 77777776654 58899887 9999999999988664
No 212
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=40.75 E-value=33 Score=37.66 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=43.4
Q ss_pred cccccccCccEEEEeCCCChHHHHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 123 AKDAMTPISKAFSLDLDATLTLDTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 123 V~dIMtPr~~VvtV~~d~tv~~eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
.+++|-. .++++....+.. -+++++++-|.+..-|.++ |++.|+|+.||+++.
T Consensus 641 lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 641 LKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred ceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 4666653 457888888888 8999999999998888754 899999999999875
No 213
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=39.94 E-value=2.3e+02 Score=25.10 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=6.3
Q ss_pred cCCCCCHHHHH
Q 015912 100 KGGDLTHDETT 110 (398)
Q Consensus 100 e~G~L~~eE~~ 110 (398)
+...++++|-+
T Consensus 157 ~~~~~s~eel~ 167 (183)
T PF01595_consen 157 EDPAVSEEELR 167 (183)
T ss_pred ccCCCCHHHHH
Confidence 34556777643
No 214
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.22 E-value=43 Score=36.20 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCceeccccCCCCcEEEEEEchhhhcc
Q 015912 145 DTLNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSV 180 (398)
Q Consensus 145 eal~~m~~~~~srlPVvd~d~~~IVGIVs~kDLl~~ 180 (398)
.+.+.+.+.|-+-++|+++ +++.|+|++||+++-
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK~ 450 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcch
Confidence 5566677788888999976 799999999999864
No 215
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.27 E-value=2.8e+02 Score=26.85 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCcccccccccccCccEEEEeCCCChHHH-HHHHHHHcC-CceeccccCCCCcEEEEEEc
Q 015912 106 HDETTIIAGALELTEKTAKDAMTPISKAFSLDLDATLTLD-TLNAIMTMG-HSRVPVYSGNPTNIIGLILV 174 (398)
Q Consensus 106 ~eE~~~I~~~l~L~~~tV~dIMtPr~~VvtV~~d~tv~~e-al~~m~~~~-~srlPVvd~d~~~IVGIVs~ 174 (398)
.+|.+.++.++++....-.+... .+++.-+++..-. . .++.=...| ....||++.+ -+||.|..
T Consensus 99 ~~en~~L~~lL~~~~~~~~~~i~--A~Vi~~~~~~~~~-~i~Id~G~~~Gv~~g~~Vv~~~--GlVG~V~~ 164 (276)
T PRK13922 99 EAENARLRELLNLKESLDYQFIT--ARVISRSPDPWSQ-QVTIDKGSNDGVKKGMPVIDPG--GLVGRVIE 164 (276)
T ss_pred HHHHHHHHHHhcCcccCCCceEE--EEEEEeCCCCcee-EEEEccCcccCCCCCCceEcCC--CCeEEEEE
Confidence 46778888888886654333333 2343333321111 0 000001122 3467888764 49999865
No 216
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=23.73 E-value=1.3e+02 Score=31.42 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=35.3
Q ss_pred CceeccccCCCCcEEEEEEchhhhcccccccccchhhhccCCcEEcCCCCHHHHHHHHHhCCCcEEEEEec
Q 015912 155 HSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 225 (398)
Q Consensus 155 ~srlPVvd~d~~~IVGIVs~kDLl~~~~~~~~~V~eIM~r~~~~V~~d~~l~daL~~m~~~~~~~apVVDe 225 (398)
..-+||.+ ++-|+++-+||+ ..... .+.+...-|-...-.|.+++++.+.+ +....+ ++.
T Consensus 306 v~v~~v~n----~VagLlTg~Di~-~l~~~--~~~d~~liP~~~fldd~t~~~~~~~l---~~~v~v-~~~ 365 (404)
T TIGR03278 306 VNVVPVKK----DIACLITEDDLE-ELDLS--EVKETVIIPGRAFVHDMVAEEILKRD---GVDRIV-VRG 365 (404)
T ss_pred EEEEEecC----cccccchHHHHH-HhcCC--CCCCEEEecCccccccccHHHHHHHh---CCcEEE-ecC
Confidence 33445543 399999999999 54332 34443222333345577888888777 445454 444
No 217
>PF14044 NETI: NETI protein
Probab=20.81 E-value=94 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.7
Q ss_pred EEcCCCCHHHHHHHHHhCCCcEEEEEe
Q 015912 198 RVSEDMPLYDILNEFQKGHSHIAVVYK 224 (398)
Q Consensus 198 ~V~~d~~l~daL~~m~~~~~~~apVVD 224 (398)
.|.++.++.++|.+|++.+. .||..
T Consensus 3 eV~enETI~~CL~RM~~eGY--~PvrR 27 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGY--MPVRR 27 (57)
T ss_pred eccCCCcHHHHHHHHHHcCC--Cceee
Confidence 58899999999999998865 66653
Done!