Query 015913
Match_columns 398
No_of_seqs 255 out of 1661
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 04:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w7n_A TRFB transcriptional re 95.0 0.017 5.7E-07 44.8 3.5 60 56-126 4-63 (101)
2 1jhg_A Trp operon repressor; c 94.6 0.0057 2E-07 47.4 -0.1 46 80-126 35-86 (101)
3 1tc3_C Protein (TC3 transposas 94.3 0.013 4.4E-07 38.3 1.1 40 80-120 5-44 (51)
4 2o8x_A Probable RNA polymerase 93.9 0.045 1.5E-06 38.7 3.4 47 80-127 15-61 (70)
5 2glo_A Brinker CG9653-PA; prot 93.1 0.035 1.2E-06 38.3 1.7 45 79-124 4-52 (59)
6 2p7v_B Sigma-70, RNA polymeras 93.1 0.042 1.4E-06 39.0 2.2 47 80-126 5-54 (68)
7 1tty_A Sigma-A, RNA polymerase 93.0 0.056 1.9E-06 40.4 2.8 47 80-126 18-67 (87)
8 2jn6_A Protein CGL2762, transp 93.0 0.043 1.5E-06 41.9 2.2 43 79-121 4-47 (97)
9 3hug_A RNA polymerase sigma fa 92.9 0.059 2E-06 40.7 2.9 49 80-129 37-85 (92)
10 1ku3_A Sigma factor SIGA; heli 92.7 0.067 2.3E-06 38.5 2.8 48 79-126 9-59 (73)
11 3t72_q RNA polymerase sigma fa 91.1 0.12 4E-06 39.9 2.6 48 80-127 19-69 (99)
12 1fse_A GERE; helix-turn-helix 91.0 0.15 5E-06 36.3 3.0 46 79-126 10-55 (74)
13 1jko_C HIN recombinase, DNA-in 90.7 0.039 1.3E-06 36.2 -0.4 27 94-120 18-44 (52)
14 2jrt_A Uncharacterized protein 90.5 0.12 4.1E-06 39.5 2.1 44 78-121 30-73 (95)
15 1p4w_A RCSB; solution structur 90.3 0.33 1.1E-05 37.2 4.6 61 62-126 18-78 (99)
16 1je8_A Nitrate/nitrite respons 90.2 0.14 4.6E-06 37.9 2.2 46 79-126 20-65 (82)
17 3c57_A Two component transcrip 89.9 0.16 5.6E-06 38.5 2.6 46 79-126 26-71 (95)
18 1wy3_A Villin; structural prot 89.6 0.16 5.4E-06 31.0 1.7 20 47-66 2-21 (35)
19 2elh_A CG11849-PA, LD40883P; s 89.4 0.14 4.9E-06 38.2 1.8 45 79-124 21-65 (87)
20 1s7o_A Hypothetical UPF0122 pr 89.3 0.18 6.1E-06 39.8 2.4 48 80-128 22-69 (113)
21 2x48_A CAG38821; archeal virus 89.2 0.096 3.3E-06 35.2 0.7 27 94-120 28-54 (55)
22 1xsv_A Hypothetical UPF0122 pr 88.8 0.27 9.3E-06 38.7 3.1 48 80-128 25-72 (113)
23 3frw_A Putative Trp repressor 88.8 0.29 9.8E-06 38.0 3.1 28 93-120 54-81 (107)
24 1und_A Advillin, P92; actin bi 88.5 0.21 7.1E-06 30.9 1.7 21 46-66 3-23 (37)
25 1x3u_A Transcriptional regulat 87.6 0.23 7.7E-06 35.9 1.8 44 81-126 17-60 (79)
26 1or7_A Sigma-24, RNA polymeras 87.6 0.35 1.2E-05 41.2 3.3 52 80-132 140-191 (194)
27 2rnj_A Response regulator prot 87.2 0.18 6.3E-06 37.8 1.2 45 79-125 28-72 (91)
28 1pdn_C Protein (PRD paired); p 87.2 0.25 8.5E-06 38.9 2.0 44 79-123 16-59 (128)
29 1k78_A Paired box protein PAX5 86.9 0.29 1E-05 40.1 2.3 44 79-123 31-74 (149)
30 2jpc_A SSRB; DNA binding prote 86.8 0.24 8.2E-06 33.8 1.5 33 94-126 10-42 (61)
31 3ulq_B Transcriptional regulat 86.4 0.32 1.1E-05 36.6 2.1 46 79-126 28-73 (90)
32 1u78_A TC3 transposase, transp 86.0 0.27 9.1E-06 39.7 1.6 42 79-121 5-46 (141)
33 1rp3_A RNA polymerase sigma fa 86.0 0.47 1.6E-05 41.7 3.4 50 79-129 186-235 (239)
34 2lfw_A PHYR sigma-like domain; 85.8 0.57 1.9E-05 38.8 3.6 50 79-129 92-141 (157)
35 2rn7_A IS629 ORFA; helix, all 85.4 0.21 7E-06 38.8 0.6 44 79-122 5-55 (108)
36 1hlv_A CENP-B, major centromer 85.2 0.42 1.4E-05 38.2 2.4 49 78-126 5-54 (131)
37 1iuf_A Centromere ABP1 protein 84.9 0.36 1.2E-05 39.7 1.9 47 77-123 8-62 (144)
38 2q1z_A RPOE, ECF SIGE; ECF sig 83.7 0.58 2E-05 39.5 2.8 47 80-127 135-181 (184)
39 3mzy_A RNA polymerase sigma-H 83.1 0.65 2.2E-05 38.0 2.8 49 80-130 109-157 (164)
40 2k27_A Paired box protein PAX- 82.5 0.35 1.2E-05 40.2 0.8 41 79-120 24-64 (159)
41 1j1v_A Chromosomal replication 81.0 0.57 1.9E-05 35.6 1.5 48 79-126 28-76 (94)
42 1u78_A TC3 transposase, transp 80.5 2.3 7.8E-05 33.9 5.2 75 46-120 23-102 (141)
43 1qzp_A Dematin; villin headpie 79.9 0.85 2.9E-05 32.3 2.0 21 46-66 34-54 (68)
44 1zyb_A Transcription regulator 78.2 1.2 4E-05 39.1 2.9 45 79-123 160-212 (232)
45 1yu8_X Villin; alpha helix, 3- 76.2 0.92 3.1E-05 32.0 1.2 21 46-66 33-53 (67)
46 3kor_A Possible Trp repressor; 76.0 0.7 2.4E-05 36.5 0.6 31 89-119 67-97 (119)
47 1l0o_C Sigma factor; bergerat 75.8 0.55 1.9E-05 41.3 0.0 46 79-125 197-242 (243)
48 1uxc_A FRUR (1-57), fructose r 75.4 0.71 2.4E-05 32.4 0.5 21 99-119 2-22 (65)
49 2k6m_S Supervillin; SVHP, HP, 75.0 0.9 3.1E-05 32.1 0.9 20 46-65 33-52 (67)
50 2d1h_A ST1889, 109AA long hypo 74.8 1.3 4.6E-05 33.4 2.0 28 96-123 35-62 (109)
51 2oa4_A SIR5; structure, struct 74.3 1.9 6.4E-05 33.1 2.6 46 78-123 31-76 (101)
52 3pvv_A Chromosomal replication 74.1 1.3 4.6E-05 34.0 1.8 48 79-126 32-79 (101)
53 1oyi_A Double-stranded RNA-bin 73.7 1.4 4.7E-05 32.5 1.7 41 81-123 16-56 (82)
54 3la7_A Global nitrogen regulat 73.0 0.72 2.5E-05 40.9 0.0 44 80-123 162-219 (243)
55 2l8n_A Transcriptional repress 72.9 0.89 3E-05 32.1 0.5 23 98-120 10-32 (67)
56 1zx4_A P1 PARB, plasmid partit 72.6 1.4 4.7E-05 38.1 1.7 42 79-120 6-47 (192)
57 3szt_A QCSR, quorum-sensing co 71.6 2.3 8E-05 37.7 3.1 46 78-125 173-218 (237)
58 1qgp_A Protein (double strande 71.1 1.7 5.7E-05 31.5 1.6 40 84-123 16-57 (77)
59 3dv8_A Transcriptional regulat 70.9 1.3 4.6E-05 38.1 1.3 44 80-123 145-195 (220)
60 2lkp_A Transcriptional regulat 70.5 1.7 5.9E-05 33.9 1.8 28 96-123 44-71 (119)
61 2jt1_A PEFI protein; solution 70.3 1.9 6.4E-05 31.3 1.7 27 96-122 23-49 (77)
62 3qp6_A CVIR transcriptional re 70.0 4.8 0.00017 36.4 4.9 46 79-126 196-241 (265)
63 3ryp_A Catabolite gene activat 70.0 1.8 6E-05 37.0 1.8 44 80-123 137-193 (210)
64 2heo_A Z-DNA binding protein 1 69.6 1.8 6.1E-05 30.4 1.5 39 85-123 13-51 (67)
65 1r1u_A CZRA, repressor protein 69.2 2.7 9.4E-05 32.1 2.6 29 95-123 37-65 (106)
66 3r0a_A Putative transcriptiona 69.0 2 7E-05 34.0 1.9 26 98-123 43-68 (123)
67 3ech_A MEXR, multidrug resista 68.7 3.4 0.00012 32.9 3.3 43 80-123 34-77 (142)
68 4aik_A Transcriptional regulat 68.3 2.6 8.8E-05 34.5 2.4 44 80-123 28-72 (151)
69 3clo_A Transcriptional regulat 68.2 2.2 7.7E-05 38.3 2.2 46 79-126 196-241 (258)
70 2oz6_A Virulence factor regula 67.8 2 6.8E-05 36.5 1.7 44 80-123 134-190 (207)
71 1l9z_H Sigma factor SIGA; heli 67.7 2.5 8.6E-05 41.4 2.6 47 80-126 375-424 (438)
72 1ujs_A Actin-binding LIM prote 67.7 1.3 4.6E-05 32.9 0.5 23 45-67 47-69 (88)
73 2qvo_A Uncharacterized protein 67.2 1.6 5.5E-05 32.7 0.9 26 98-123 31-56 (95)
74 2q0o_A Probable transcriptiona 67.2 2.8 9.6E-05 37.0 2.6 47 78-126 173-219 (236)
75 3fx3_A Cyclic nucleotide-bindi 66.8 3.9 0.00013 35.6 3.5 45 79-123 150-204 (237)
76 2l1p_A DNA-binding protein SAT 66.7 1.8 6E-05 31.7 0.9 23 97-119 32-54 (83)
77 1l3l_A Transcriptional activat 66.4 3.3 0.00011 36.6 2.9 46 79-126 172-217 (234)
78 2gxg_A 146AA long hypothetical 66.0 3.4 0.00012 33.0 2.7 42 80-123 34-76 (146)
79 2fmy_A COOA, carbon monoxide o 65.5 1.6 5.4E-05 37.8 0.6 44 80-123 136-193 (220)
80 1ku9_A Hypothetical protein MJ 65.3 2.6 9E-05 33.7 1.9 43 81-123 24-67 (152)
81 2zcw_A TTHA1359, transcription 65.1 2.6 9E-05 35.8 1.9 44 80-123 116-172 (202)
82 1o5l_A Transcriptional regulat 64.8 1.4 4.6E-05 38.1 0.0 58 80-137 140-205 (213)
83 3iwz_A CAP-like, catabolite ac 64.7 2.7 9.1E-05 36.4 1.9 44 80-123 157-213 (230)
84 2x4h_A Hypothetical protein SS 64.6 2.7 9.3E-05 33.5 1.8 28 96-123 30-57 (139)
85 1qbj_A Protein (double-strande 64.5 3 0.0001 30.6 1.8 39 84-122 12-52 (81)
86 3e6c_C CPRK, cyclic nucleotide 64.1 3.2 0.00011 36.6 2.4 45 79-123 145-203 (250)
87 1y0u_A Arsenical resistance op 64.1 2.2 7.7E-05 31.9 1.2 29 95-123 41-69 (96)
88 2a6h_F RNA polymerase sigma fa 63.9 2.9 9.9E-05 40.8 2.2 47 80-126 360-409 (423)
89 2l0k_A Stage III sporulation p 63.8 1.6 5.6E-05 32.9 0.3 25 97-121 20-44 (93)
90 1sfx_A Conserved hypothetical 63.1 3.2 0.00011 31.1 1.9 28 96-123 33-60 (109)
91 3b02_A Transcriptional regulat 63.0 3.1 0.00011 35.1 2.0 45 79-123 108-165 (195)
92 3d0s_A Transcriptional regulat 62.8 1.7 5.9E-05 37.6 0.3 44 80-123 146-203 (227)
93 3cuo_A Uncharacterized HTH-typ 62.7 2.9 9.9E-05 31.0 1.6 27 97-123 38-64 (99)
94 2ao9_A Phage protein; structur 62.5 3 0.0001 34.6 1.7 40 80-119 23-70 (155)
95 1ft9_A Carbon monoxide oxidati 62.4 2.5 8.5E-05 36.5 1.3 44 80-123 132-189 (222)
96 1zs4_A Regulatory protein CII; 62.3 4.1 0.00014 30.0 2.2 31 98-128 25-59 (83)
97 2pij_A Prophage PFL 6 CRO; tra 62.1 1.5 5.1E-05 30.2 -0.2 24 94-118 11-34 (67)
98 3mky_B Protein SOPB; partition 61.8 2.7 9.1E-05 36.1 1.3 42 78-119 21-64 (189)
99 1tbx_A ORF F-93, hypothetical 61.5 3.7 0.00013 30.6 2.0 38 85-123 11-52 (99)
100 3hsr_A HTH-type transcriptiona 61.3 4.3 0.00015 32.3 2.5 43 80-123 33-76 (140)
101 2pg4_A Uncharacterized protein 61.1 3.3 0.00011 30.8 1.6 27 97-123 30-57 (95)
102 2htj_A P fimbrial regulatory p 60.7 4.1 0.00014 29.4 2.0 27 97-123 14-40 (81)
103 3bpv_A Transcriptional regulat 60.6 4.1 0.00014 32.1 2.2 43 80-123 26-69 (138)
104 1r71_A Transcriptional repress 60.4 3.2 0.00011 35.3 1.6 42 78-119 33-74 (178)
105 3k0l_A Repressor protein; heli 60.1 4.9 0.00017 32.9 2.7 43 80-123 43-86 (162)
106 1p6r_A Penicillinase repressor 59.7 4 0.00014 29.4 1.8 43 80-123 6-53 (82)
107 3bja_A Transcriptional regulat 59.5 4.6 0.00016 31.8 2.3 43 80-123 30-73 (139)
108 3g3z_A NMB1585, transcriptiona 59.3 4.9 0.00017 32.0 2.5 44 80-123 28-71 (145)
109 3nrv_A Putative transcriptiona 59.2 4.4 0.00015 32.4 2.2 43 80-123 37-80 (148)
110 3kcc_A Catabolite gene activat 59.2 3.2 0.00011 37.0 1.4 44 80-123 187-243 (260)
111 2bv6_A MGRA, HTH-type transcri 59.2 4.4 0.00015 32.2 2.1 42 81-123 35-77 (142)
112 1r1t_A Transcriptional repress 59.0 5.8 0.0002 31.2 2.8 28 96-123 58-85 (122)
113 2fbi_A Probable transcriptiona 58.9 4 0.00014 32.3 1.8 28 96-123 49-76 (142)
114 2frh_A SARA, staphylococcal ac 58.9 3.8 0.00013 32.3 1.7 44 80-123 34-79 (127)
115 3dkw_A DNR protein; CRP-FNR, H 58.8 2.9 9.9E-05 36.0 1.1 45 80-124 150-205 (227)
116 4ev0_A Transcription regulator 58.7 2.4 8.4E-05 36.2 0.5 44 80-123 139-189 (216)
117 2nnn_A Probable transcriptiona 58.5 4.4 0.00015 31.9 2.0 43 80-123 35-78 (140)
118 1rzs_A Antirepressor, regulato 58.1 1.6 5.3E-05 30.0 -0.7 22 97-118 10-31 (61)
119 2fu4_A Ferric uptake regulatio 58.0 5.7 0.0002 28.6 2.4 28 96-123 32-64 (83)
120 3iyd_F RNA polymerase sigma fa 57.9 3.9 0.00013 41.9 2.0 47 79-125 549-598 (613)
121 3jth_A Transcription activator 57.5 4.1 0.00014 30.4 1.6 28 96-123 35-62 (98)
122 4hbl_A Transcriptional regulat 57.4 4.6 0.00016 32.5 2.0 43 80-123 38-81 (149)
123 4b8x_A SCO5413, possible MARR- 57.3 6 0.00021 32.0 2.7 44 80-123 32-77 (147)
124 2pex_A Transcriptional regulat 57.3 4.6 0.00016 32.6 2.0 43 80-123 44-87 (153)
125 3eco_A MEPR; mutlidrug efflux 57.1 4.7 0.00016 31.9 2.0 44 80-123 28-73 (139)
126 3fmy_A HTH-type transcriptiona 57.0 2.9 9.9E-05 29.5 0.6 26 94-119 21-46 (73)
127 3tgn_A ADC operon repressor AD 56.9 5.8 0.0002 31.5 2.6 42 80-123 35-77 (146)
128 3cdh_A Transcriptional regulat 56.9 6.3 0.00022 31.8 2.8 43 80-123 40-83 (155)
129 3oop_A LIN2960 protein; protei 56.8 4.4 0.00015 32.3 1.8 44 80-123 34-77 (143)
130 3bro_A Transcriptional regulat 56.8 5.2 0.00018 31.6 2.2 44 80-123 31-76 (141)
131 3m8j_A FOCB protein; all-alpha 56.7 18 0.00062 28.0 5.1 58 56-124 29-87 (111)
132 3cjn_A Transcriptional regulat 56.6 4.8 0.00016 32.8 2.0 43 80-123 49-92 (162)
133 2cob_A LCOR protein; MLR2, KIA 56.6 3.3 0.00011 29.3 0.8 39 81-119 13-52 (70)
134 3kp7_A Transcriptional regulat 56.6 5.3 0.00018 32.1 2.3 42 80-123 35-77 (151)
135 1on2_A Transcriptional regulat 56.5 4.1 0.00014 32.6 1.5 28 96-123 21-48 (142)
136 2fbh_A Transcriptional regulat 56.5 4.4 0.00015 32.2 1.8 43 81-123 35-78 (146)
137 2cw1_A SN4M; lambda CRO fold, 56.2 2.1 7.3E-05 29.9 -0.2 21 98-118 14-34 (65)
138 2dk5_A DNA-directed RNA polyme 56.1 2.9 9.8E-05 31.4 0.5 45 79-123 16-62 (91)
139 1z91_A Organic hydroperoxide r 55.6 4.6 0.00016 32.2 1.7 44 80-124 37-81 (147)
140 2kko_A Possible transcriptiona 55.5 4.1 0.00014 31.3 1.3 36 86-123 29-64 (108)
141 2rdp_A Putative transcriptiona 55.5 5.1 0.00017 32.1 2.0 43 80-123 39-82 (150)
142 3bdd_A Regulatory protein MARR 55.3 5.2 0.00018 31.6 2.0 28 96-123 44-71 (142)
143 2xi8_A Putative transcription 55.2 3.3 0.00011 27.9 0.7 25 95-119 12-36 (66)
144 3bj6_A Transcriptional regulat 55.2 5.2 0.00018 32.1 2.0 43 80-123 37-80 (152)
145 2a61_A Transcriptional regulat 55.2 5.1 0.00018 31.8 1.9 43 80-123 30-73 (145)
146 3deu_A Transcriptional regulat 55.2 5 0.00017 33.2 1.9 44 80-123 50-94 (166)
147 3jw4_A Transcriptional regulat 55.1 5.2 0.00018 32.1 2.0 28 96-123 56-83 (148)
148 1jgs_A Multiple antibiotic res 54.7 5.4 0.00018 31.4 2.0 43 80-123 31-74 (138)
149 4dyq_A Gene 1 protein; GP1, oc 54.6 2.7 9.2E-05 34.2 0.1 32 90-121 21-53 (140)
150 3kz3_A Repressor protein CI; f 54.4 3.5 0.00012 29.5 0.7 25 95-119 23-47 (80)
151 3bd1_A CRO protein; transcript 54.3 3.4 0.00011 29.5 0.6 24 96-120 11-34 (79)
152 2qww_A Transcriptional regulat 54.2 5.5 0.00019 32.1 2.0 43 80-123 38-81 (154)
153 2gau_A Transcriptional regulat 54.1 7.1 0.00024 33.7 2.8 44 80-123 150-206 (232)
154 1neq_A DNA-binding protein NER 53.9 3.7 0.00013 29.4 0.7 26 95-120 20-45 (74)
155 3fm5_A Transcriptional regulat 53.7 4.7 0.00016 32.4 1.5 43 81-123 37-80 (150)
156 3uj3_X DNA-invertase; helix-tu 53.6 2.8 9.4E-05 35.9 0.0 36 85-120 146-181 (193)
157 2fa5_A Transcriptional regulat 53.6 6.1 0.00021 32.1 2.2 29 95-123 61-89 (162)
158 1q1h_A TFE, transcription fact 53.5 5.4 0.00018 30.5 1.7 27 97-123 33-59 (110)
159 1zug_A Phage 434 CRO protein; 53.1 3.8 0.00013 28.1 0.7 25 95-119 14-38 (71)
160 3dn7_A Cyclic nucleotide bindi 53.1 2.8 9.7E-05 35.2 0.0 43 80-122 148-193 (194)
161 1s3j_A YUSO protein; structura 52.8 5 0.00017 32.3 1.5 43 80-123 34-77 (155)
162 4fx0_A Probable transcriptiona 52.8 14 0.00047 29.9 4.2 27 97-123 52-78 (148)
163 2a6c_A Helix-turn-helix motif; 52.6 4 0.00014 29.5 0.7 27 94-120 28-54 (83)
164 3omt_A Uncharacterized protein 52.6 3.9 0.00013 28.5 0.7 26 95-120 19-44 (73)
165 1lj9_A Transcriptional regulat 52.5 4.1 0.00014 32.4 0.9 42 81-123 27-69 (144)
166 2oqg_A Possible transcriptiona 52.4 5.2 0.00018 30.6 1.4 37 85-123 24-60 (114)
167 3e97_A Transcriptional regulat 52.1 4.2 0.00014 35.2 1.0 42 82-123 146-201 (231)
168 1pdn_C Protein (PRD paired); p 52.0 18 0.00061 27.7 4.7 74 46-120 34-126 (128)
169 2hin_A GP39, repressor protein 52.0 3.7 0.00013 29.2 0.5 22 99-120 12-33 (71)
170 3pqk_A Biofilm growth-associat 51.9 5.5 0.00019 29.9 1.5 28 96-123 35-62 (102)
171 1xwr_A Regulatory protein CII; 51.8 6.1 0.00021 30.0 1.7 25 97-121 23-47 (97)
172 3kjx_A Transcriptional regulat 51.8 5.4 0.00019 36.9 1.8 23 98-120 11-33 (344)
173 1r69_A Repressor protein CI; g 51.7 4.1 0.00014 27.8 0.7 25 95-119 12-36 (69)
174 3u2r_A Regulatory protein MARR 51.7 10 0.00036 31.0 3.4 44 80-123 43-88 (168)
175 1k78_A Paired box protein PAX5 51.4 15 0.00051 29.5 4.2 76 46-122 49-143 (149)
176 3boq_A Transcriptional regulat 51.3 6.8 0.00023 31.7 2.1 43 81-123 45-88 (160)
177 2eth_A Transcriptional regulat 50.8 5.1 0.00017 32.4 1.2 43 80-123 41-84 (154)
178 3e6m_A MARR family transcripti 50.8 5.8 0.0002 32.4 1.6 42 81-123 51-93 (161)
179 3f6o_A Probable transcriptiona 50.4 4.1 0.00014 31.8 0.5 29 95-123 29-57 (118)
180 3nqo_A MARR-family transcripti 50.4 9.3 0.00032 32.3 2.9 43 81-123 39-83 (189)
181 2r1j_L Repressor protein C2; p 50.3 4.3 0.00015 27.5 0.6 25 95-119 16-40 (68)
182 3f3x_A Transcriptional regulat 50.3 6.6 0.00023 31.2 1.8 25 99-123 52-76 (144)
183 2nyx_A Probable transcriptiona 50.1 6.4 0.00022 32.5 1.8 43 80-123 42-85 (168)
184 2hr3_A Probable transcriptiona 50.0 7.7 0.00026 30.8 2.2 44 80-123 32-76 (147)
185 1fx7_A Iron-dependent represso 48.6 5.4 0.00018 35.1 1.1 41 83-123 7-50 (230)
186 3b7h_A Prophage LP1 protein 11 48.4 4.6 0.00016 28.3 0.5 26 95-120 18-43 (78)
187 2b5a_A C.BCLI; helix-turn-heli 47.9 5.1 0.00017 28.0 0.7 25 95-119 21-45 (77)
188 3f6v_A Possible transcriptiona 47.7 7.4 0.00025 32.0 1.7 29 95-123 69-97 (151)
189 4ghj_A Probable transcriptiona 47.4 3.7 0.00012 31.4 -0.2 27 93-119 45-71 (101)
190 2zkz_A Transcriptional repress 47.2 4.8 0.00016 30.3 0.4 29 96-124 40-68 (99)
191 3qq6_A HTH-type transcriptiona 47.2 3.8 0.00013 29.3 -0.1 28 93-120 19-46 (78)
192 1u2w_A CADC repressor, cadmium 47.1 6.1 0.00021 31.0 1.1 28 96-123 55-82 (122)
193 2hsg_A Glucose-resistance amyl 47.1 4.7 0.00016 37.1 0.5 23 98-120 3-25 (332)
194 2p5k_A Arginine repressor; DNA 47.1 6.3 0.00021 26.6 1.0 23 97-119 19-46 (64)
195 1y7y_A C.AHDI; helix-turn-heli 46.8 5.4 0.00019 27.5 0.7 25 95-119 24-48 (74)
196 2bgc_A PRFA; bacterial infecti 46.0 5.6 0.00019 34.7 0.8 44 80-123 137-196 (238)
197 3bs3_A Putative DNA-binding pr 45.9 5.7 0.00019 27.7 0.7 25 95-119 21-45 (76)
198 1qpz_A PURA, protein (purine n 45.6 5.1 0.00017 37.1 0.5 22 99-120 2-23 (340)
199 2k9q_A Uncharacterized protein 45.5 5.6 0.00019 28.0 0.6 26 94-119 12-37 (77)
200 1j9i_A GPNU1 DBD;, terminase s 45.5 5.1 0.00017 27.9 0.3 22 99-120 4-25 (68)
201 1adr_A P22 C2 repressor; trans 45.4 5.6 0.00019 27.6 0.6 25 95-119 16-40 (76)
202 3o9x_A Uncharacterized HTH-typ 45.4 5.5 0.00019 31.6 0.6 26 94-119 81-106 (133)
203 3s2w_A Transcriptional regulat 45.3 5.3 0.00018 32.5 0.5 36 87-123 55-90 (159)
204 2fbk_A Transcriptional regulat 45.2 15 0.0005 30.6 3.3 44 80-123 66-112 (181)
205 2g9w_A Conserved hypothetical 45.0 9.9 0.00034 30.4 2.1 44 80-123 6-54 (138)
206 1vz0_A PARB, chromosome partit 45.0 7.7 0.00026 34.3 1.5 42 78-119 115-156 (230)
207 2pn6_A ST1022, 150AA long hypo 44.8 12 0.0004 30.3 2.5 27 97-123 17-43 (150)
208 2b0l_A GTP-sensing transcripti 44.8 9.1 0.00031 29.1 1.7 24 99-122 45-68 (102)
209 1okr_A MECI, methicillin resis 44.7 8.2 0.00028 29.8 1.5 43 80-123 7-54 (123)
210 3eus_A DNA-binding protein; st 44.5 6.2 0.00021 28.7 0.7 26 94-119 24-49 (86)
211 2kpj_A SOS-response transcript 44.4 6.2 0.00021 29.1 0.7 25 95-119 20-44 (94)
212 2wiu_B HTH-type transcriptiona 44.4 6.3 0.00022 28.4 0.7 25 95-119 23-47 (88)
213 1v4r_A Transcriptional repress 44.0 8.4 0.00029 29.0 1.4 23 99-121 37-59 (102)
214 3trb_A Virulence-associated pr 44.0 6.5 0.00022 30.0 0.8 39 80-119 11-49 (104)
215 3h5t_A Transcriptional regulat 43.8 5.9 0.0002 37.0 0.6 23 98-120 10-32 (366)
216 2g7u_A Transcriptional regulat 43.8 11 0.00037 33.8 2.3 44 80-123 9-55 (257)
217 2cfx_A HTH-type transcriptiona 43.8 11 0.00036 30.4 2.1 27 97-123 19-45 (144)
218 2cyy_A Putative HTH-type trans 43.6 12 0.0004 30.4 2.3 27 97-123 21-47 (151)
219 2o20_A Catabolite control prot 43.4 5 0.00017 37.0 0.0 23 98-120 6-28 (332)
220 2w25_A Probable transcriptiona 43.4 11 0.00036 30.6 2.0 27 97-123 21-47 (150)
221 3ctp_A Periplasmic binding pro 43.3 5 0.00017 37.0 0.0 22 99-120 4-25 (330)
222 2ovg_A Phage lambda CRO; trans 43.1 6.2 0.00021 27.5 0.5 22 98-119 14-35 (66)
223 3r4k_A Transcriptional regulat 43.0 11 0.00038 33.8 2.3 43 81-123 2-47 (260)
224 1mkm_A ICLR transcriptional re 42.8 7.2 0.00025 34.7 1.0 41 83-123 6-49 (249)
225 2jsc_A Transcriptional regulat 42.5 8.5 0.00029 29.9 1.3 28 96-123 33-60 (118)
226 1xn7_A Hypothetical protein YH 42.4 9 0.00031 27.7 1.3 27 97-123 16-42 (78)
227 1sfu_A 34L protein; protein/Z- 42.3 15 0.0005 26.4 2.4 40 82-121 12-53 (75)
228 3bil_A Probable LACI-family tr 42.3 5.3 0.00018 37.2 0.0 23 98-120 9-31 (348)
229 2xrn_A HTH-type transcriptiona 42.1 7.7 0.00026 34.4 1.1 41 83-123 4-47 (241)
230 3f6w_A XRE-family like protein 42.1 6.8 0.00023 27.9 0.6 25 95-119 25-49 (83)
231 3h5o_A Transcriptional regulat 41.8 5.4 0.00019 36.9 0.0 23 98-120 5-27 (339)
232 2ewt_A BLDD, putative DNA-bind 41.7 7.8 0.00027 26.5 0.8 25 95-119 19-45 (71)
233 2o0y_A Transcriptional regulat 41.7 11 0.00038 33.7 2.1 44 80-123 18-64 (260)
234 2cg4_A Regulatory protein ASNC 41.5 13 0.00045 30.1 2.3 27 97-123 22-48 (152)
235 2eby_A Putative HTH-type trans 41.5 7.4 0.00025 29.7 0.8 26 94-119 21-46 (113)
236 1jye_A Lactose operon represso 41.5 5.5 0.00019 37.1 0.0 24 98-121 4-27 (349)
237 3t76_A VANU, transcriptional r 41.5 7.3 0.00025 28.8 0.7 27 94-120 34-60 (88)
238 3jvd_A Transcriptional regulat 41.4 5.6 0.00019 36.8 0.0 23 98-120 7-29 (333)
239 3s8q_A R-M controller protein; 41.3 6.8 0.00023 27.9 0.5 27 94-120 21-47 (82)
240 1lmb_3 Protein (lambda repress 41.3 7.1 0.00024 28.5 0.6 27 94-120 27-53 (92)
241 2w48_A Sorbitol operon regulat 41.3 10 0.00034 35.1 1.7 34 89-122 13-46 (315)
242 3dbi_A Sugar-binding transcrip 41.2 5.6 0.00019 36.7 0.0 23 98-120 4-26 (338)
243 2fxa_A Protease production reg 41.0 11 0.00037 32.5 1.8 43 80-123 45-88 (207)
244 2dbb_A Putative HTH-type trans 41.0 13 0.00046 29.9 2.3 27 97-123 23-49 (151)
245 1i1g_A Transcriptional regulat 40.4 10 0.00035 30.1 1.5 27 97-123 18-44 (141)
246 2ict_A Antitoxin HIGA; helix-t 40.4 7.6 0.00026 28.5 0.6 26 95-120 19-44 (94)
247 2ef8_A C.ECOT38IS, putative tr 40.2 7.8 0.00027 27.5 0.7 25 95-119 21-45 (84)
248 3e3m_A Transcriptional regulat 40.0 6 0.00021 36.9 0.0 23 98-120 13-35 (355)
249 1ub9_A Hypothetical protein PH 39.8 10 0.00035 27.9 1.3 28 96-123 29-56 (100)
250 3cec_A Putative antidote prote 39.7 7.7 0.00026 29.2 0.6 25 95-119 29-53 (104)
251 2ppx_A AGR_C_3184P, uncharacte 39.6 7.8 0.00027 28.9 0.6 25 95-119 41-65 (99)
252 2ia2_A Putative transcriptiona 39.3 12 0.00041 33.6 1.9 44 80-123 16-62 (265)
253 2p5v_A Transcriptional regulat 37.7 14 0.0005 30.2 2.0 27 97-123 24-50 (162)
254 1z4h_A TORI, TOR inhibition pr 37.6 9 0.00031 26.5 0.6 23 98-120 11-33 (66)
255 3plo_X DNA-invertase; resolvas 37.6 6.9 0.00024 33.4 0.0 38 87-124 148-185 (193)
256 1a04_A Nitrate/nitrite respons 37.5 8.9 0.00031 32.6 0.7 45 80-126 154-198 (215)
257 2hzt_A Putative HTH-type trans 37.0 15 0.00051 27.9 1.9 29 95-123 25-54 (107)
258 2k02_A Ferrous iron transport 35.7 10 0.00034 28.1 0.6 25 97-121 16-40 (87)
259 2qq9_A Diphtheria toxin repres 35.6 9.1 0.00031 33.6 0.4 40 84-123 8-50 (226)
260 1gdt_A GD resolvase, protein ( 35.4 7.9 0.00027 32.6 0.0 27 93-119 154-180 (183)
261 2l49_A C protein; P2 bacteriop 35.2 10 0.00035 28.0 0.6 26 95-120 15-40 (99)
262 2wte_A CSA3; antiviral protein 35.2 15 0.00053 32.7 1.9 29 95-123 164-192 (244)
263 3hot_A Transposable element ma 35.0 34 0.0012 31.5 4.4 161 51-219 32-222 (345)
264 1x57_A Endothelial differentia 35.0 11 0.00038 27.4 0.8 26 94-119 23-48 (91)
265 2ia0_A Putative HTH-type trans 34.8 18 0.00061 30.1 2.2 27 97-123 31-57 (171)
266 2v79_A DNA replication protein 34.7 39 0.0013 27.0 4.1 27 97-123 51-77 (135)
267 1b0n_A Protein (SINR protein); 34.6 11 0.00037 28.5 0.7 26 95-120 12-37 (111)
268 3f52_A CLP gene regulator (CLG 34.4 12 0.00041 28.7 0.9 39 81-119 23-63 (117)
269 1c9b_A General transcription f 34.3 45 0.0015 28.4 4.8 54 80-133 138-195 (207)
270 3tqn_A Transcriptional regulat 34.2 21 0.00071 27.4 2.3 25 99-123 35-59 (113)
271 2ofy_A Putative XRE-family tra 34.1 12 0.00041 26.8 0.8 33 87-119 17-49 (86)
272 1ais_B TFB TFIIB, protein (tra 34.1 46 0.0016 28.1 4.8 47 80-126 144-194 (200)
273 1sd4_A Penicillinase repressor 34.0 17 0.00058 28.1 1.8 43 80-123 7-54 (126)
274 3hrs_A Metalloregulator SCAR; 33.9 14 0.00049 32.0 1.5 39 85-123 5-46 (214)
275 2gqq_A Leucine-responsive regu 33.8 22 0.00077 29.1 2.6 29 95-123 25-53 (163)
276 2e1c_A Putative HTH-type trans 33.8 19 0.00065 30.0 2.2 27 97-123 41-67 (171)
277 1z7u_A Hypothetical protein EF 33.7 16 0.00056 27.9 1.6 28 96-123 34-62 (112)
278 3k2z_A LEXA repressor; winged 33.6 16 0.00054 31.2 1.6 27 96-122 23-49 (196)
279 3oou_A LIN2118 protein; protei 33.2 19 0.00065 27.1 1.9 29 94-122 18-46 (108)
280 3c3w_A Two component transcrip 33.1 9.7 0.00033 32.8 0.2 44 80-125 149-192 (225)
281 3kxa_A NGO0477 protein, putati 33.1 12 0.00039 30.3 0.6 27 94-120 78-104 (141)
282 2v57_A TETR family transcripti 32.9 17 0.00057 29.8 1.7 35 96-130 31-65 (190)
283 2h09_A Transcriptional regulat 32.8 13 0.00046 30.0 1.0 28 96-123 53-80 (155)
284 1j5y_A Transcriptional regulat 32.8 20 0.00067 30.3 2.1 27 97-123 36-62 (187)
285 2fe3_A Peroxide operon regulat 32.8 25 0.00084 28.4 2.6 28 96-123 36-68 (145)
286 3op9_A PLI0006 protein; struct 32.5 12 0.00041 28.5 0.6 25 95-119 20-44 (114)
287 2r0q_C Putative transposon TN5 32.3 11 0.00038 32.5 0.4 28 93-120 171-198 (209)
288 3n0r_A Response regulator; sig 32.0 13 0.00045 33.7 0.9 48 80-128 111-158 (286)
289 3neu_A LIN1836 protein; struct 32.0 15 0.0005 28.9 1.1 24 99-122 39-62 (125)
290 2ek5_A Predicted transcription 31.9 27 0.00093 27.6 2.7 22 99-120 30-51 (129)
291 2f2e_A PA1607; transcription f 31.8 12 0.00043 30.2 0.7 28 96-123 36-63 (146)
292 1uly_A Hypothetical protein PH 31.5 23 0.00077 30.2 2.3 36 86-123 24-59 (192)
293 3g5g_A Regulatory protein; tra 31.4 9.6 0.00033 28.6 -0.1 27 94-120 38-64 (99)
294 2k4b_A Transcriptional regulat 30.9 9.3 0.00032 29.0 -0.3 39 84-123 37-79 (99)
295 2auw_A Hypothetical protein NE 30.9 9.6 0.00033 32.1 -0.2 28 92-119 98-125 (170)
296 1yio_A Response regulatory pro 30.8 12 0.00042 31.4 0.5 44 80-125 142-185 (208)
297 3oio_A Transcriptional regulat 30.8 20 0.00069 27.2 1.7 28 94-121 20-47 (113)
298 2o38_A Hypothetical protein; a 30.8 13 0.00046 29.0 0.7 26 94-119 50-75 (120)
299 2vn2_A DNAD, chromosome replic 30.7 21 0.00072 28.1 1.8 26 98-123 52-77 (128)
300 2p5t_A Putative transcriptiona 30.7 10 0.00036 31.0 0.0 24 94-117 11-34 (158)
301 1yyv_A Putative transcriptiona 30.7 23 0.00079 28.0 2.1 28 96-123 47-75 (131)
302 4hku_A LMO2814 protein, TETR t 30.5 18 0.00061 29.6 1.4 34 96-129 26-59 (178)
303 2fd5_A Transcriptional regulat 30.3 19 0.00064 29.2 1.5 35 97-131 27-61 (180)
304 3mn2_A Probable ARAC family tr 30.0 19 0.00064 27.1 1.4 28 94-121 15-42 (108)
305 2k9s_A Arabinose operon regula 29.7 27 0.00091 26.2 2.2 27 96-122 19-45 (107)
306 3df8_A Possible HXLR family tr 29.5 20 0.00067 27.5 1.4 27 97-123 40-69 (111)
307 3mq0_A Transcriptional repress 29.4 11 0.00038 34.1 -0.0 45 79-123 24-71 (275)
308 3cta_A Riboflavin kinase; stru 29.4 16 0.00056 31.9 1.0 27 97-123 27-53 (230)
309 3mlf_A Transcriptional regulat 29.3 15 0.00052 28.1 0.7 26 94-119 33-58 (111)
310 3i4p_A Transcriptional regulat 29.1 29 0.001 28.4 2.5 27 97-123 17-43 (162)
311 1nr3_A MTH0916, DNA-binding pr 29.1 11 0.00036 29.6 -0.3 25 96-120 4-28 (122)
312 2jvl_A TRMBF1; coactivator, he 28.9 16 0.00054 27.8 0.7 25 95-119 47-71 (107)
313 1rr7_A Middle operon regulator 28.9 17 0.00057 29.0 0.9 28 96-123 91-118 (129)
314 3ic7_A Putative transcriptiona 28.9 33 0.0011 26.9 2.7 23 99-121 37-59 (126)
315 3by6_A Predicted transcription 28.8 18 0.00061 28.5 1.1 23 99-121 37-59 (126)
316 2h8r_A Hepatocyte nuclear fact 28.8 10 0.00034 33.4 -0.5 28 92-119 39-66 (221)
317 2obp_A Putative DNA-binding pr 28.4 18 0.00061 27.3 0.9 27 97-123 36-62 (96)
318 3ivp_A Putative transposon-rel 28.2 16 0.00055 28.4 0.7 26 94-119 22-47 (126)
319 2fsw_A PG_0823 protein; alpha- 28.2 23 0.0008 26.7 1.7 29 95-123 36-65 (107)
320 2wus_R RODZ, putative uncharac 28.2 14 0.00049 28.5 0.4 26 94-119 17-42 (112)
321 2fq4_A Transcriptional regulat 28.2 18 0.00061 29.9 1.0 34 96-129 31-64 (192)
322 1hsj_A Fusion protein consisti 28.0 17 0.00057 35.5 1.0 44 80-123 401-446 (487)
323 3vk0_A NHTF, transcriptional r 28.0 16 0.00055 27.9 0.6 38 82-119 17-56 (114)
324 4ham_A LMO2241 protein; struct 27.7 19 0.00065 28.6 1.1 22 99-120 40-61 (134)
325 2k27_A Paired box protein PAX- 27.7 32 0.0011 27.9 2.5 74 46-120 42-134 (159)
326 3kkc_A TETR family transcripti 27.5 15 0.00053 29.6 0.5 35 97-131 32-66 (177)
327 3ccy_A Putative TETR-family tr 27.4 21 0.00072 29.7 1.4 34 96-129 33-66 (203)
328 2zcm_A Biofilm operon icaabcd 27.1 18 0.00062 29.7 0.9 35 96-130 26-60 (192)
329 1xmk_A Double-stranded RNA-spe 26.9 25 0.00085 25.4 1.5 40 83-123 12-52 (79)
330 1ic8_A Hepatocyte nuclear fact 26.9 17 0.0006 31.2 0.7 25 95-119 41-65 (194)
331 3bqz_B HTH-type transcriptiona 26.8 19 0.00064 29.4 0.9 36 96-131 21-56 (194)
332 2iu5_A DHAS, YCEG, HTH-type dh 26.6 22 0.00075 29.4 1.3 34 97-130 33-66 (195)
333 3dew_A Transcriptional regulat 26.4 19 0.00065 29.6 0.9 36 97-132 28-63 (206)
334 2di3_A Bacterial regulatory pr 26.2 62 0.0021 28.1 4.3 22 100-121 31-52 (239)
335 2ras_A Transcriptional regulat 26.2 23 0.00078 29.6 1.4 36 96-131 30-65 (212)
336 3on4_A Transcriptional regulat 26.0 17 0.0006 29.5 0.6 36 96-131 29-64 (191)
337 3egq_A TETR family transcripti 25.9 18 0.00061 29.1 0.6 35 97-131 24-58 (170)
338 3lwj_A Putative TETR-family tr 25.9 18 0.00063 29.8 0.7 35 97-131 32-66 (202)
339 3qkx_A Uncharacterized HTH-typ 25.7 19 0.00064 29.2 0.7 33 97-129 28-60 (188)
340 3klo_A Transcriptional regulat 25.6 33 0.0011 29.2 2.3 44 80-125 159-202 (225)
341 2p8t_A Hypothetical protein PH 25.4 30 0.001 29.8 1.9 40 84-123 17-56 (200)
342 1zk8_A Transcriptional regulat 25.4 18 0.00063 29.3 0.6 34 97-130 28-61 (183)
343 3qbm_A TETR transcriptional re 25.1 19 0.00066 29.4 0.7 35 96-130 26-60 (199)
344 3him_A Probable transcriptiona 24.9 21 0.00073 29.5 0.9 34 97-130 36-69 (211)
345 2eh3_A Transcriptional regulat 24.9 20 0.00067 29.2 0.7 35 96-130 21-55 (179)
346 1ixc_A CBNR, LYSR-type regulat 24.9 22 0.00075 31.3 1.1 32 95-126 13-44 (294)
347 3aqt_A Bacterial regulatory pr 24.9 25 0.00086 30.4 1.4 34 97-130 66-99 (245)
348 1bl0_A Protein (multiple antib 24.9 35 0.0012 26.6 2.2 29 94-122 24-52 (129)
349 3gzi_A Transcriptional regulat 24.9 22 0.00075 29.7 1.0 35 97-131 37-71 (218)
350 1p4x_A Staphylococcal accessor 24.8 54 0.0018 29.1 3.6 44 80-123 31-76 (250)
351 2qko_A Possible transcriptiona 24.5 27 0.00091 29.3 1.5 37 97-133 48-84 (215)
352 3col_A Putative transcription 24.4 20 0.00067 29.3 0.6 35 97-131 30-64 (196)
353 2dg8_A Putative TETR-family tr 24.3 20 0.0007 29.5 0.7 35 97-131 29-63 (193)
354 3on2_A Probable transcriptiona 24.2 19 0.00064 29.5 0.4 35 97-131 32-66 (199)
355 3nrg_A TETR family transcripti 24.2 24 0.00083 29.4 1.2 34 97-130 33-66 (217)
356 3lsg_A Two-component response 24.1 29 0.00098 25.8 1.4 26 97-122 19-44 (103)
357 2g7s_A Transcriptional regulat 24.0 20 0.00069 29.1 0.6 36 96-131 27-62 (194)
358 3lsj_A DEST; transcriptional r 24.0 26 0.00088 29.4 1.3 37 96-132 31-67 (220)
359 3lhq_A Acrab operon repressor 23.9 21 0.00072 29.7 0.7 35 97-131 34-68 (220)
360 3ppb_A Putative TETR family tr 23.7 21 0.00073 29.0 0.7 34 97-130 29-62 (195)
361 3u1d_A Uncharacterized protein 23.7 25 0.00087 28.8 1.1 39 85-123 30-72 (151)
362 1al3_A Cys regulon transcripti 23.7 17 0.00057 33.0 0.0 40 87-126 6-45 (324)
363 1u8b_A ADA polyprotein; protei 23.6 27 0.00091 27.4 1.2 38 85-122 79-118 (133)
364 1sgm_A Putative HTH-type trans 23.6 26 0.00088 28.4 1.2 32 97-128 26-58 (191)
365 3b81_A Transcriptional regulat 23.6 22 0.00074 29.3 0.7 33 97-129 31-63 (203)
366 2d6y_A Putative TETR family re 23.5 23 0.00079 29.6 0.9 34 97-130 28-61 (202)
367 2wui_A MEXZ, transcriptional r 23.1 22 0.00076 29.8 0.7 37 96-132 30-66 (210)
368 3knw_A Putative transcriptiona 23.1 22 0.00076 29.5 0.7 35 96-130 33-67 (212)
369 2o0m_A Transcriptional regulat 23.0 18 0.0006 34.0 0.0 37 86-123 24-60 (345)
370 3crj_A Transcription regulator 23.0 23 0.00077 29.5 0.7 34 96-129 33-66 (199)
371 3kz9_A SMCR; transcriptional r 22.9 23 0.00078 29.1 0.7 34 97-130 37-70 (206)
372 3cwr_A Transcriptional regulat 22.9 23 0.00078 29.2 0.7 38 96-133 36-73 (208)
373 3f1b_A TETR-like transcription 22.8 23 0.0008 29.0 0.8 34 97-130 34-67 (203)
374 2zb9_A Putative transcriptiona 22.8 22 0.00075 29.8 0.6 33 97-129 43-75 (214)
375 2o3f_A Putative HTH-type trans 22.6 25 0.00084 27.1 0.8 24 97-120 39-62 (111)
376 3rd3_A Probable transcriptiona 22.6 23 0.00079 28.9 0.7 33 97-129 30-62 (197)
377 3vp5_A Transcriptional regulat 22.5 23 0.0008 29.2 0.7 33 97-129 32-64 (189)
378 3cjd_A Transcriptional regulat 22.5 22 0.00077 29.6 0.6 35 96-130 31-65 (198)
379 2jj7_A Hemolysin II regulatory 22.5 24 0.00081 28.7 0.7 37 97-133 27-63 (186)
380 1pb6_A Hypothetical transcript 22.5 25 0.00084 29.2 0.8 35 96-130 37-71 (212)
381 3c2b_A Transcriptional regulat 22.3 25 0.00085 29.5 0.9 37 96-132 34-70 (221)
382 1y6u_A XIS, excisionase from t 22.3 24 0.00082 24.8 0.6 23 97-119 16-38 (70)
383 3nxc_A HTH-type protein SLMA; 22.2 23 0.00079 29.4 0.6 35 96-130 44-78 (212)
384 1wft_A 1700129L13RIK protein; 22.2 80 0.0027 24.5 3.5 24 152-175 5-34 (123)
385 2yve_A Transcriptional regulat 22.1 24 0.00082 29.0 0.7 33 97-129 24-56 (185)
386 3dpj_A Transcription regulator 22.1 24 0.00082 28.9 0.7 35 96-130 27-61 (194)
387 1rkt_A Protein YFIR; transcrip 22.0 24 0.00082 29.4 0.7 35 96-130 31-65 (205)
388 3vib_A MTRR; helix-turn-helix 22.0 24 0.00082 29.5 0.7 34 96-129 29-62 (210)
389 2xdn_A HTH-type transcriptiona 22.0 26 0.00089 29.2 0.9 36 96-131 30-65 (210)
390 2i10_A Putative TETR transcrip 22.0 30 0.001 28.8 1.3 37 96-132 30-66 (202)
391 3s5r_A Transcriptional regulat 21.9 29 0.001 28.8 1.2 36 96-131 29-64 (216)
392 3lfp_A CSP231I C protein; tran 21.8 26 0.00089 25.8 0.7 26 94-119 11-40 (98)
393 2ibd_A Possible transcriptiona 21.6 26 0.00087 29.2 0.8 34 96-129 33-66 (204)
394 4aci_A HTH-type transcriptiona 21.6 20 0.0007 29.2 0.1 35 97-131 34-68 (191)
395 2nx4_A Transcriptional regulat 21.4 25 0.00087 29.0 0.7 33 96-128 29-61 (194)
396 2hyt_A TETR-family transcripti 21.4 29 0.00099 28.7 1.1 35 96-130 31-65 (197)
397 2qtq_A Transcriptional regulat 21.4 27 0.00093 28.9 0.9 34 97-130 36-69 (213)
398 1p4x_A Staphylococcal accessor 21.4 45 0.0015 29.6 2.4 44 80-123 155-200 (250)
399 3mkl_A HTH-type transcriptiona 21.3 43 0.0015 25.6 2.0 28 94-121 20-47 (120)
400 3fzv_A Probable transcriptiona 21.2 26 0.0009 31.0 0.8 32 95-126 16-47 (306)
401 3bru_A Regulatory protein, TET 21.1 26 0.00088 29.4 0.7 35 97-131 50-84 (222)
402 3c19_A Uncharacterized protein 21.1 49 0.0017 28.1 2.3 28 158-195 38-65 (186)
403 2g7g_A RHA04620, putative tran 21.1 31 0.0011 29.3 1.2 37 95-132 28-64 (213)
404 3geu_A Intercellular adhesion 21.1 21 0.00072 29.2 0.1 34 97-130 23-56 (189)
405 2o7t_A Transcriptional regulat 21.0 25 0.00085 29.1 0.6 35 97-131 28-62 (199)
406 3f0c_A TETR-molecule A, transc 21.0 26 0.0009 29.1 0.7 34 97-130 31-64 (216)
407 3eup_A Transcriptional regulat 20.9 21 0.00071 29.4 0.0 33 97-129 31-63 (204)
408 3ljl_A Transcriptional regulat 20.9 22 0.00075 28.4 0.2 33 97-129 34-66 (156)
409 3qqa_A CMER; alpha-helical, he 20.9 25 0.00085 29.3 0.5 34 97-130 39-72 (216)
410 3rh2_A Hypothetical TETR-like 20.7 25 0.00087 29.3 0.6 34 97-130 23-56 (212)
411 3he0_A Transcriptional regulat 20.7 27 0.00092 28.5 0.7 35 96-130 30-64 (196)
412 2rek_A Putative TETR-family tr 20.7 25 0.00087 29.0 0.5 35 97-131 35-69 (199)
413 3dcf_A Transcriptional regulat 20.7 27 0.00091 29.1 0.7 35 97-131 51-85 (218)
414 3anp_C Transcriptional repress 20.5 25 0.00086 29.2 0.5 33 97-129 29-61 (204)
415 3bjb_A Probable transcriptiona 20.5 27 0.00093 29.3 0.7 35 97-131 42-76 (207)
416 3iwf_A Transcription regulator 20.5 30 0.001 26.4 0.9 24 97-120 35-58 (107)
417 1ais_B TFB TFIIB, protein (tra 20.4 1E+02 0.0035 25.9 4.4 76 50-125 18-97 (200)
418 2qwt_A Transcriptional regulat 20.4 27 0.00094 28.9 0.7 36 96-131 31-66 (196)
419 2y75_A HTH-type transcriptiona 20.3 36 0.0012 26.5 1.3 27 97-123 26-52 (129)
420 1vi0_A Transcriptional regulat 20.2 27 0.00091 29.3 0.6 34 97-130 28-61 (206)
421 3bhq_A Transcriptional regulat 20.2 29 0.00099 29.0 0.8 34 96-129 31-64 (211)
422 2guh_A Putative TETR-family tr 20.2 33 0.0011 29.0 1.2 37 97-133 59-95 (214)
No 1
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.03 E-value=0.017 Score=44.79 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHhcCCccccCCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 56 RMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 56 rms~~~F~~L~~~l~~~~~~~~~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
|||.+.|+.+...++ ++. ..+-++=.|+-.|.++.++|..+|+|+++|++.+.+.-+...
T Consensus 4 rmT~~eFe~~~~~l~----------~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 4 RLTESQFQEAIQGLE----------VGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHTTCC----------CCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccCC----------hHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 799999999987662 222 224445556677999999999999999999999998887653
No 2
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=94.60 E-value=0.0057 Score=47.36 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCHHHHHHhheec-----cccc-cchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFI-----VGHN-LRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~-----L~~~-~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
-+++.|+-++.+++ |..| .+|++||...|+|.+||+|+ ++.++-+.
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 47778886666553 3466 99999999999999999999 77666554
No 3
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=94.32 E-value=0.013 Score=38.28 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=32.1
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.++.+++..+... +..|.++.++|..+|+|.+||.+++++
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 5777777555444 467899999999999999999998764
No 4
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=93.86 E-value=0.045 Score=38.69 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=40.5
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 127 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~ 127 (398)
.+++.++-.+.|+++ .|.++.++|..+|+|.+||.+.+++....|..
T Consensus 15 ~L~~~~r~il~l~~~-~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQL-LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 588888887777664 58999999999999999999999998888764
No 5
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=93.14 E-value=0.035 Score=38.26 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCCHHHHHHhheeccccccc----hhhhhcccccccchhhhhhhhHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLR----TRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~----~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
+..|++.++.+ +.++..|.+ ...+|..||||.+|+.++++..-..
T Consensus 4 ~~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~ 52 (59)
T 2glo_A 4 RIFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNL 52 (59)
T ss_dssp CCCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46788888888 667778888 9999999999999999998765443
No 6
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.13 E-value=0.042 Score=38.97 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred CCCHHHHHHhheec-c--ccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFI-V--GHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~-L--~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
.+++.++-.+.|++ + ..|.++.++|..+|+|.+||....++....|.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 58888998888887 3 57999999999999999999999888777664
No 7
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.01 E-value=0.056 Score=40.45 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=41.2
Q ss_pred CCCHHHHHHhheec-cc--cccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
.+|+.++-.+.|++ |+ .|.++.++|..+|+|.+||..+..+....|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 58899998888887 44 7899999999999999999999988887774
No 8
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=92.97 E-value=0.043 Score=41.88 Aligned_cols=43 Identities=5% Similarity=-0.043 Sum_probs=36.7
Q ss_pred CCCCHHHHHHhheecccc-ccchhhhhcccccccchhhhhhhhH
Q 015913 79 NRIKIEEQLAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~-~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+..|++.+..+.-.++.. |.+...++..||||.+|+++++...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 457888888887777776 8999999999999999999987653
No 9
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.89 E-value=0.059 Score=40.69 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=41.9
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.++..++-++.|+++ .|.++.+||..+|+|.+||...+++....|....
T Consensus 37 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHT-SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 378888888888765 5899999999999999999999999988887543
No 10
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.74 E-value=0.067 Score=38.46 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhheecc-c--cccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIV-G--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L-~--~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..+++.++-.+.|+++ . .|.++.++|..+|+|.+||..+..+....|.
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3689999988888874 3 6899999999999999999999998888876
No 11
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=91.12 E-value=0.12 Score=39.91 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=42.6
Q ss_pred CCCHHHHHHhheecc---ccccchhhhhcccccccchhhhhhhhHHHHHHH
Q 015913 80 RIKIEEQLAIFMFIV---GHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 127 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L---~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~ 127 (398)
.+|+.++-.+.|++. ..|.++.++|..+|+|.+||....++.+..|-.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488999999999885 378999999999999999999999999888863
No 12
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=90.95 E-value=0.15 Score=36.34 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..+++.++-.+.++ ..|.++.++|..+|+|.+||...+.+....|.
T Consensus 10 ~~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 46888888777663 78899999999999999999999998887764
No 13
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=90.66 E-value=0.039 Score=36.23 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+..|.+..++|..+|||.+||++++++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 457899999999999999999998764
No 14
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=90.46 E-value=0.12 Score=39.49 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhH
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
.+..+.+.|+.+++..+..+.+..+++.+|+||.+++.++.+.+
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999988765
No 15
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=90.27 E-value=0.33 Score=37.23 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCccccCCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 62 FYKLCDILQSKGLLRHTNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 62 F~~L~~~l~~~~~~~~~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
...++..|.... .....+++.++-.+.| +..|.++.+||...|+|.+||..++.++...|.
T Consensus 18 ~~~~l~~l~~~~--~~~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 18 VAKLLEKISAGG--YGDKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp HHHHHHHHHCCC--CSSSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHccCC--cccCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 445666666532 2246799988877666 458999999999999999999999998887763
No 16
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.19 E-value=0.14 Score=37.85 Aligned_cols=46 Identities=13% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..++..++-.+.|+ ..|.++.++|..+|+|.+||...+++....|.
T Consensus 20 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 46888888777773 68999999999999999999999988877663
No 17
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=89.94 E-value=0.16 Score=38.53 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..++..++-.+.|+ ..|.++.++|..+|+|.+||..++.+....|.
T Consensus 26 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35888888888774 78999999999999999999999988887774
No 18
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=89.61 E-value=0.16 Score=31.05 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=18.1
Q ss_pred ChhHHHhhcCCCHHHHHHHH
Q 015913 47 QSERCLENFRMDKKVFYKLC 66 (398)
Q Consensus 47 ~d~~f~~~frms~~~F~~L~ 66 (398)
+|++|...|+|+|+.|..|=
T Consensus 2 sd~dF~~vFgmsr~eF~~LP 21 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSC
T ss_pred CHHHHHHHHCCCHHHHHHCc
Confidence 68999999999999998863
No 19
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.41 E-value=0.14 Score=38.16 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=35.5
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
+..+.+.+..+.-.+ ..|.+...+|..||||.+|++++++..-..
T Consensus 21 ~~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 467888776555444 578999999999999999999998776543
No 20
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=89.32 E-value=0.18 Score=39.82 Aligned_cols=48 Identities=6% Similarity=0.105 Sum_probs=40.4
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 128 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~ 128 (398)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||.+.+++....|...
T Consensus 22 ~L~~~~r~vl~l~y~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-DDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHH-TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 378888877766654 589999999999999999999999999888643
No 21
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=89.24 E-value=0.096 Score=35.19 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=24.1
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+..|.++.++|..+|+|.+||++++++
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 467899999999999999999998754
No 22
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.79 E-value=0.27 Score=38.70 Aligned_cols=48 Identities=6% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 128 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~ 128 (398)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|...
T Consensus 25 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 378888877777654 589999999999999999999999999888643
No 23
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=88.78 E-value=0.29 Score=37.99 Aligned_cols=28 Identities=21% Similarity=0.093 Sum_probs=24.7
Q ss_pred ccccccchhhhhcccccccchhhhhhhh
Q 015913 93 IVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 93 ~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+|..|.+|++++...|+|.+||+|+-+.
T Consensus 54 lL~~G~SyreIa~~tG~StaTIsRv~r~ 81 (107)
T 3frw_A 54 MLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCccHHHHHHHHHH
Confidence 4888999999999999999999996543
No 24
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=88.48 E-value=0.21 Score=30.92 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=18.7
Q ss_pred CChhHHHhhcCCCHHHHHHHH
Q 015913 46 GQSERCLENFRMDKKVFYKLC 66 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~ 66 (398)
.+|++|...|+|+|+.|..|=
T Consensus 3 Lsd~dF~~vFgmsr~eF~~LP 23 (37)
T 1und_A 3 LSEQDFVSVFGITRGQFAALP 23 (37)
T ss_dssp CCHHHHHHHHSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 478999999999999998863
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=87.59 E-value=0.23 Score=35.93 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 81 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 81 ~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+++.++-.+.| + ..|.++.++|..+|+|.+||...+.+....|.
T Consensus 17 L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 56667766666 3 68999999999999999999999988877663
No 26
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=87.57 E-value=0.35 Score=41.22 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
.+|+.++-++.|+++ .|.++.++|...|+|.+||...+++....|-+....+
T Consensus 140 ~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 191 (194)
T 1or7_A 140 SLPEDLRMAITLREL-DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPL 191 (194)
T ss_dssp HSCHHHHHHHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hCCHHHHHHhHHHHH-cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888776 4899999999999999999999999999887655544
No 27
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=87.24 E-value=0.18 Score=37.82 Aligned_cols=45 Identities=11% Similarity=0.258 Sum_probs=38.1
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
..+++.++-.+.|+ ..|.++.++|..+|+|.+||..++.+....|
T Consensus 28 ~~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 28 EMLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GGCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35788888777773 6899999999999999999999988877765
No 28
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=87.18 E-value=0.25 Score=38.94 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.++.+.+..+...+ ..|.+...+|..||+|.+||++++++...
T Consensus 16 ~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 467888887765554 57999999999999999999999987643
No 29
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=86.85 E-value=0.29 Score=40.14 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.++.+.+..+...+ ..|.+...+|..||+|.+||+++++++..
T Consensus 31 ~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 31 RPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp SCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468888887776655 57899999999999999999999987643
No 30
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=86.81 E-value=0.24 Score=33.83 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.8
Q ss_pred cccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+..|.++.++|..+|+|.+||..++++...-|.
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 578999999999999999999999998887763
No 31
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=86.37 E-value=0.32 Score=36.58 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..++..++-.+.|. +.|.++.++|..+|+|..||..++.++..-|.
T Consensus 28 ~~Lt~rE~~Vl~l~--~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 28 DVLTPRECLILQEV--EKGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 46888887666554 48999999999999999999999998877663
No 32
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=86.05 E-value=0.27 Score=39.70 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=34.0
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
..++.+++..+...+ ..|.+...+|..+|+|.+||++++++.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 457788776665544 679999999999999999999988754
No 33
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=86.04 E-value=0.47 Score=41.72 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=44.0
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
..+++.++-++.|+++ .|.++.+||..+|+|.+||...+++....|-...
T Consensus 186 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-EELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TTSCHHHHHHHHHHHT-SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999888876 5899999999999999999999999998887543
No 34
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=85.76 E-value=0.57 Score=38.80 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=43.5
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
..+|+.++-++.|.++. |.++.++|...|+|.+||...+.+....|-+..
T Consensus 92 ~~Lp~~~r~vl~L~~~~-g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME-GFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSS-CCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47899999888887765 899999999999999999999999988887543
No 35
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=85.35 E-value=0.21 Score=38.76 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=36.4
Q ss_pred CCCCHHHHHHhheeccccc-------cchhhhhcccccccchhhhhhhhHH
Q 015913 79 NRIKIEEQLAIFMFIVGHN-------LRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~-------~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+..|++.+..++-.++..| .+...++..||||.+|++++++..-
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4678888888777776655 7999999999999999999987643
No 36
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=85.15 E-value=0.42 Score=38.23 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHhheeccccccchh-hhhcccccccchhhhhhhhHHHHHH
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTR-AVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~-~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+..++.+.+..+.-.+..+|.+.. ++|..||||.+|++++++..-....
T Consensus 5 r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 457899999887766656676655 9999999999999999988665543
No 37
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=84.91 E-value=0.36 Score=39.68 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHhheec--cccccchhhhhc----cc--ccccchhhhhhhhHHH
Q 015913 77 HTNRIKIEEQLAIFMFI--VGHNLRTRAVQE----LF--RYSGETISRHFNNVLN 123 (398)
Q Consensus 77 ~~~~~s~e~~l~~~L~~--L~~~~~~~~l~~----~f--gis~stv~r~~~~v~~ 123 (398)
.+..++.++++.+..++ -..+.+..+||. .| ++|++||+++++.--.
T Consensus 8 ~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 8 KRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 45689999999999998 345568889999 99 9999999999876433
No 38
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=83.69 E-value=0.58 Score=39.46 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=40.7
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMA 127 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~ 127 (398)
.+|+.++-++.|+++ .|.++.++|..+|+|.+||...+++....|-+
T Consensus 135 ~L~~~~r~vl~l~~~-~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-GDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHH-SCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488888888888766 48999999999999999999999988887754
No 39
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=83.06 E-value=0.65 Score=38.04 Aligned_cols=49 Identities=6% Similarity=0.051 Sum_probs=40.9
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+|+.++-.+. + .-.|.++.++|..+|+|.+||...+++....|-....
T Consensus 109 ~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47888887776 4 4469999999999999999999999999988875443
No 40
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.46 E-value=0.35 Score=40.25 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhh
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+.++.+++..+...+ ..|.+..++|..||+|.+||++++++
T Consensus 24 ~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467888887765554 57899999999999999999998764
No 41
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=80.98 E-value=0.57 Score=35.58 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=42.6
Q ss_pred CCCCHHHHHHhheeccccccchhhhhccc-ccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELF-RYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~f-gis~stv~r~~~~v~~~l~ 126 (398)
+.+...-|++|.|.+--++.|+.++|..| |.+.|||...++++-+.+.
T Consensus 28 ~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 28 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45777788999998888999999999999 8999999999999888774
No 42
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=80.52 E-value=2.3 Score=33.92 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=52.4
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHHhcCCcc--ccC-CCCCHHHHHHhheeccccccchhhhhcccc--cccchhhhhhhh
Q 015913 46 GQSERCLENFRMDKKVFYKLCDILQSKGLL--RHT-NRIKIEEQLAIFMFIVGHNLRTRAVQELFR--YSGETISRHFNN 120 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~~~l~~~~~~--~~~-~~~s~e~~l~~~L~~L~~~~~~~~l~~~fg--is~stv~r~~~~ 120 (398)
.+-.+.-+.+++++.++.+.+......... .++ +.+++++...+.-.......+...++..+| +|.+||++++++
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 566788889999999999988876654321 112 357776654333222233478899999998 799999998875
No 43
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=79.93 E-value=0.85 Score=32.34 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.0
Q ss_pred CChhHHHhhcCCCHHHHHHHH
Q 015913 46 GQSERCLENFRMDKKVFYKLC 66 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~ 66 (398)
.+|++|...|+|+++.|..|=
T Consensus 34 LsdedF~~vFgmsr~eF~~LP 54 (68)
T 1qzp_A 34 LSAEDFSRVFAMSPEEFGKLA 54 (68)
T ss_dssp BCHHHHHHHSSSCHHHHHHSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 589999999999999999863
No 44
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=78.19 E-value=1.2 Score=39.08 Aligned_cols=45 Identities=9% Similarity=0.239 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhheecccc--------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGH--------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~--------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
...+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 160 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 160 PTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp CCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 467899999999987753 257899999999999999998887654
No 45
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=76.21 E-value=0.92 Score=32.02 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.9
Q ss_pred CChhHHHhhcCCCHHHHHHHH
Q 015913 46 GQSERCLENFRMDKKVFYKLC 66 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~ 66 (398)
.+|++|...|+|+++.|..|=
T Consensus 33 LsdedF~~vFgms~~eF~~LP 53 (67)
T 1yu8_X 33 LSDEDFKAVFGMTRSAFANLP 53 (67)
T ss_dssp SCHHHHHHHHSSCHHHHHTSC
T ss_pred CCHHHHHHHHCcCHHHHHHCh
Confidence 689999999999999998763
No 46
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=75.98 E-value=0.7 Score=36.53 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=26.5
Q ss_pred hheeccccccchhhhhcccccccchhhhhhh
Q 015913 89 IFMFIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 89 ~~L~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
-++..|+.|.+|++|+...|+|.+||+|+-+
T Consensus 67 eV~klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 67 QVAKMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3455688999999999999999999999544
No 47
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=75.84 E-value=0.55 Score=41.26 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
..+|+.++-++.|+++ .|.++.+||..+|+|.+||...+++....|
T Consensus 197 ~~L~~~~r~vl~l~~~-~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 197 EELDERERLIVYLRYY-KDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -----------------------------------------------
T ss_pred HhCCHHHHHHHHHHHh-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 3688888888888776 589999999999999999999888766543
No 48
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=75.37 E-value=0.71 Score=32.40 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=19.0
Q ss_pred chhhhhcccccccchhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~ 119 (398)
+..+||...|+|++|||++++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 467899999999999999886
No 49
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=75.02 E-value=0.9 Score=32.08 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=18.3
Q ss_pred CChhHHHhhcCCCHHHHHHH
Q 015913 46 GQSERCLENFRMDKKVFYKL 65 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L 65 (398)
.+|++|...|+|+++.|..|
T Consensus 33 LsdedF~~vFgmsr~eF~~L 52 (67)
T 2k6m_S 33 LTDEDFEFALDMTRDEYNAL 52 (67)
T ss_dssp SCHHHHHHHTSSCHHHHTTS
T ss_pred CCHHHHHHHHCcCHHHHHHC
Confidence 68999999999999999875
No 50
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=74.77 E-value=1.3 Score=33.42 Aligned_cols=28 Identities=11% Similarity=0.442 Sum_probs=23.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||+++++...+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999998776544
No 51
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=74.25 E-value=1.9 Score=33.10 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+......|++++......+.|+.+.+.+|+||.+++.++.+.+..
T Consensus 31 ~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 31 TRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp CSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3567777899999999999999999999999999999998876643
No 52
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=74.07 E-value=1.3 Score=33.98 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+.+...-|++|.|..=-++.|+..+|..||...|||...++++-+.+.
T Consensus 32 ~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 32 RALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356677789998888778999999999999999999999999888775
No 53
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=73.70 E-value=1.4 Score=32.49 Aligned_cols=41 Identities=2% Similarity=-0.012 Sum_probs=31.8
Q ss_pred CCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
-+..++++.+|. ..|.+..+||..+|+|+++|.+.+.....
T Consensus 16 ~~~~~~IL~lL~--~~g~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 16 AEIVCEAIKTIG--IEGATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp HHHHHHHHHHHS--SSTEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666776666 35699999999999999999987766544
No 54
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=72.97 E-value=0.72 Score=40.87 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=36.6
Q ss_pred CCCHHHHHHhheecccc--------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++|+-+|..++. ..+..++|...|+|+.||+|+++++.+
T Consensus 162 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 162 HRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 46889999988887642 357899999999999999998887665
No 55
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=72.85 E-value=0.89 Score=32.08 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=20.4
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+..+||...|+|.+|||++++.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 47899999999999999998863
No 56
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=72.59 E-value=1.4 Score=38.12 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=30.8
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhh
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+..|..+.-.-..+++..|.++.++|..+|||+++|+|.+..
T Consensus 6 ke~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 345554443333344678999999999999999999996643
No 57
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=71.60 E-value=2.3 Score=37.73 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
...+|+.|+-.+.| ++.|.+..++|...|||..||..++.++..-|
T Consensus 173 ~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 173 NVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 45799988866655 58999999999999999999999998887765
No 58
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.14 E-value=1.7 Score=31.54 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHHhheeccc--cccchhhhhcccccccchhhhhhhhHHH
Q 015913 84 EEQLAIFMFIVG--HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 84 e~~l~~~L~~L~--~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+++-+|.-.+ .+.+..+||..+|+|++||.+.+.+..+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345555555555 2578999999999999999987766544
No 59
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=70.88 E-value=1.3 Score=38.05 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=37.7
Q ss_pred CCCHHHHHHhheecccc-------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..+.. ..+..++|...|+|++|++|++++..+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47889999999988764 568899999999999999998877655
No 60
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=70.51 E-value=1.7 Score=33.85 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=24.7
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||++.++....
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999998877665
No 61
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.32 E-value=1.9 Score=31.35 Aligned_cols=27 Identities=11% Similarity=0.098 Sum_probs=21.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
...+.++||+.||+|.+||.+.+....
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456889999999999999887665443
No 62
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=70.04 E-value=4.8 Score=36.37 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.3
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..++..|+-.+.+. +.|.++.++|...|||..||..++.++..-|.
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 47888888766665 68999999999999999999999998877663
No 63
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=70.03 E-value=1.8 Score=36.98 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCCHHHHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++.+|..++. ..+..++|...|+|++|++|++++..+
T Consensus 137 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 137 FLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46889999998887653 246789999999999999998877654
No 64
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.60 E-value=1.8 Score=30.36 Aligned_cols=39 Identities=5% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 85 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 85 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++-.|.-=+...+..+||..+|+|++||++.+.....
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444432123578899999999999999997765443
No 65
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=69.23 E-value=2.7 Score=32.06 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=24.4
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..+++..+|+|++||+++++...+
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44578999999999999999998876654
No 66
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.96 E-value=2 Score=33.95 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=22.6
Q ss_pred cchhhhhcccccccchhhhhhhhHHH
Q 015913 98 LRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+..+|+...++|++||+|.+....+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68999999999999999998766554
No 67
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=68.65 E-value=3.4 Score=32.92 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=27.7
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++|+++.+++..+
T Consensus 34 ~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 34 DLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555444 3333333 34789999999999999999998876655
No 68
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=68.32 E-value=2.6 Score=34.52 Aligned_cols=44 Identities=2% Similarity=-0.008 Sum_probs=31.5
Q ss_pred CCCHHH-HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+ .++..|+..+.+.+..+||..++++++|+++++++..+
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 355544 34445554555677789999999999999998776554
No 69
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=68.24 E-value=2.2 Score=38.34 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=40.7
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..+|+.++-.+.|. ..|.++.++|+..|+|.+||...+++....|.
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~ 241 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKLS 241 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 47999999888885 48999999999999999999999988887763
No 70
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.79 E-value=2 Score=36.53 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=35.5
Q ss_pred CCCHHHHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46888999888876543 247789999999999999998887654
No 71
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=67.72 E-value=2.5 Score=41.38 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=41.3
Q ss_pred CCCHHHHHHhheec-cc--cccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
.++..++-.+.|+| |. .+.++.+||..+|||.+||..+.++.+..|-
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 58888888888888 43 6799999999999999999999998888876
No 72
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=67.68 E-value=1.3 Score=32.91 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.7
Q ss_pred cCChhHHHhhcCCCHHHHHHHHH
Q 015913 45 NGQSERCLENFRMDKKVFYKLCD 67 (398)
Q Consensus 45 ~~~d~~f~~~frms~~~F~~L~~ 67 (398)
-.+|++|...|+|+|+.|..|=.
T Consensus 47 YLSdedF~~vFgMsr~eF~~LP~ 69 (88)
T 1ujs_A 47 HLSQEEFYQVFGMTISEFDRLAL 69 (88)
T ss_dssp GSCTTHHHHHHSSCHHHHTTSCH
T ss_pred cCCHHHHHHHHCcCHHHHHHChH
Confidence 36899999999999999987643
No 73
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=67.20 E-value=1.6 Score=32.67 Aligned_cols=26 Identities=0% Similarity=-0.104 Sum_probs=22.7
Q ss_pred cchhhhhcccccccchhhhhhhhHHH
Q 015913 98 LRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+..+|+..++++++||++++++...
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 78999999999999999998766554
No 74
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=67.19 E-value=2.8 Score=37.04 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
...+++.|+-.+.| ++.|.++.++|...|+|.+||..++.+...-|.
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34799988877655 578999999999999999999999988887764
No 75
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=66.75 E-value=3.9 Score=35.60 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCCCHHHHHHhheecccc----------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGH----------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~----------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
...+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 150 ~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 150 KAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 468899999999988753 235788999999999999998766543
No 76
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=66.72 E-value=1.8 Score=31.70 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.5
Q ss_pred ccchhhhhcccccccchhhhhhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~ 119 (398)
|.++..+|...|||++|++.+++
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 99999999999999999998775
No 77
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=66.36 E-value=3.3 Score=36.57 Aligned_cols=46 Identities=2% Similarity=0.029 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 79 NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
..+++.|+-.+.| ++.|.++.++|...|+|.+||..++++...-|.
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4699988877666 478999999999999999999999998887764
No 78
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=66.03 E-value=3.4 Score=32.96 Aligned_cols=42 Identities=2% Similarity=-0.041 Sum_probs=31.7
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+ ..+.+..+++..+|++++||++.+++..+
T Consensus 34 ~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 34 NLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp TCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3565444 444554 67789999999999999999997766554
No 79
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=65.49 E-value=1.6 Score=37.76 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCHHHHHHhheecccc--------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++.+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 136 ~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 136 FKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45788999988887653 467899999999999999998887654
No 80
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=65.28 E-value=2.6 Score=33.69 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCH-HHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKI-EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~-e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++ +.+++..|+.-..+.+..+++..+|++++||+++++...+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444 3445555532245789999999999999999997765544
No 81
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=65.07 E-value=2.6 Score=35.77 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCHHHHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..++. ..+..++|...|+|+.||+|+++++.+
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47889999988887643 257889999999999999999887754
No 82
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=64.78 E-value=1.4 Score=38.11 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=1.1
Q ss_pred CCCHHHHHHhheecccc-------ccchhhhhcccccccchhhhhhhhHHHH-HHHhhccccCCCC
Q 015913 80 RIKIEEQLAIFMFIVGH-------NLRTRAVQELFRYSGETISRHFNNVLNA-IMAISLDFFQPPG 137 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------~~~~~~l~~~fgis~stv~r~~~~v~~~-l~~~~~~~i~~P~ 137 (398)
..+++++++.+|..++. ..+..++|...|+|+.|++|+++++.+. +.+.....|..++
T Consensus 140 ~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d 205 (213)
T 1o5l_A 140 TKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLK 205 (213)
T ss_dssp CC----------------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEec
Confidence 46788899988887762 4578999999999999999999988753 4444444444443
No 83
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=64.74 E-value=2.7 Score=36.38 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCHHHHHHhheeccccc-------------cchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGHN-------------LRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~-------------~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..++.. .+..++|...|+|++|++|++++..+
T Consensus 157 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 157 FLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 468999999999877532 36889999999999999998876654
No 84
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=64.56 E-value=2.7 Score=33.55 Aligned_cols=28 Identities=0% Similarity=0.120 Sum_probs=23.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..++|..+|++++||++.+++..+
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4578999999999999999998776554
No 85
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.50 E-value=3 Score=30.57 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=27.1
Q ss_pred HHHHHhheeccc--cccchhhhhcccccccchhhhhhhhHH
Q 015913 84 EEQLAIFMFIVG--HNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 84 e~~l~~~L~~L~--~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+++++-+|.-.+ ...+..+||..+|+|++||.+.+.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444444333 246889999999999999988765543
No 86
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=64.12 E-value=3.2 Score=36.63 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.2
Q ss_pred CCCCHHHHHHhheeccc--------------cccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVG--------------HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~--------------~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
...+++++++-+|..++ -..+..++|...|+|+.|++|+++++.+
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~ 203 (250)
T 3e6c_C 145 NTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKR 203 (250)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35789999999997654 2357889999999999999998887665
No 87
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=64.09 E-value=2.2 Score=31.87 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=24.7
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..+++..+|+|++||+++++...+
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45688999999999999999998876654
No 88
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=63.94 E-value=2.9 Score=40.76 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCHHHHHHhheec-cc--cccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFI-VG--HNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~-L~--~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
.+++.++-.+.|+| |. .+.++.+||..+|+|.+||..+.++.+..|-
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57888888888887 44 6789999999999999999999999988886
No 89
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=63.78 E-value=1.6 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.3
Q ss_pred ccchhhhhcccccccchhhhhhhhH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+.+..++|..+|+|.+||++.++.-
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 4688999999999999999999863
No 90
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=63.07 E-value=3.2 Score=31.11 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=23.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|++++||++.++...+
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998876654
No 91
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=63.03 E-value=3.1 Score=35.12 Aligned_cols=45 Identities=7% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCCHHHHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
...+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457899999998887652 247789999999999999999988765
No 92
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=62.80 E-value=1.7 Score=37.63 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=36.1
Q ss_pred CCCHHHHHHhheeccc--------------cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG--------------HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~--------------~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..++ ...+..++|...|+|+.|++|+++++.+
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 146 FTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp HSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4789999998887763 2357889999999999999999887654
No 93
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=62.73 E-value=2.9 Score=31.03 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=23.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+..+++..+|+|++|++++++...+
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999998876643
No 94
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=62.49 E-value=3 Score=34.65 Aligned_cols=40 Identities=5% Similarity=0.092 Sum_probs=29.5
Q ss_pred CCCHHHHHHhhee---c-c----ccccchhhhhcccccccchhhhhhh
Q 015913 80 RIKIEEQLAIFMF---I-V----GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 80 ~~s~e~~l~~~L~---~-L----~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
.++.+-+.++.+. - + ..|.+..++|...|||++|++++.+
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3666666655432 1 1 1267999999999999999999888
No 95
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=62.36 E-value=2.5 Score=36.54 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=35.9
Q ss_pred CCCHHHHHHhheecccc--------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH--------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~--------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..++. ..+..++|...|+|+.|++|+++++.+
T Consensus 132 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 132 FHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp THHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46788999988877652 257889999999999999999887654
No 96
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=62.35 E-value=4.1 Score=29.97 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=23.5
Q ss_pred cchhhhhcccccccchhhhhhhhH----HHHHHHh
Q 015913 98 LRTRAVQELFRYSGETISRHFNNV----LNAIMAI 128 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~v----~~~l~~~ 128 (398)
..+..+|+..|++.||+||+-+.. +..|..+
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 568899999999999999965544 4544443
No 97
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=62.10 E-value=1.5 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.3
Q ss_pred cccccchhhhhcccccccchhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHF 118 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~ 118 (398)
...| ++..+|...|+|+++|++++
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHH
Confidence 3456 99999999999999999987
No 98
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=61.75 E-value=2.7 Score=36.07 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHhheeccccc--cchhhhhcccccccchhhhhhh
Q 015913 78 TNRIKIEEQLAIFMFIVGHN--LRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~--~~~~~l~~~fgis~stv~r~~~ 119 (398)
.+.+|.-|+=.-.+..|..| .++..+|.++|+|++.|+|++.
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 36899999988888888777 7999999999999999999875
No 99
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=61.51 E-value=3.7 Score=30.65 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=27.8
Q ss_pred HHHHhheeccccccchhhh----hcccccccchhhhhhhhHHH
Q 015913 85 EQLAIFMFIVGHNLRTRAV----QELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 85 ~~l~~~L~~L~~~~~~~~l----~~~fgis~stv~r~~~~v~~ 123 (398)
-.++.+|+. ..+.+..++ +..++++++||++.+++..+
T Consensus 11 ~~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 11 AIVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp HHHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344444443 245788888 99999999999998876665
No 100
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=61.27 E-value=4.3 Score=32.32 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..++++++|+++.+++..+
T Consensus 33 glt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp TCCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4566544 3344433 45789999999999999999998776654
No 101
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=61.14 E-value=3.3 Score=30.83 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=23.8
Q ss_pred ccchhhhhcccccccch-hhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGET-ISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~st-v~r~~~~v~~ 123 (398)
+.+..+++..++++++| +++.+++..+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57999999999999999 9998876654
No 102
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=60.73 E-value=4.1 Score=29.39 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+..++++.+|+|++||++.++...+
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999998776654
No 103
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=60.62 E-value=4.1 Score=32.07 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=30.0
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++||++.+++...
T Consensus 26 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp TCCHHHHHHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 3333332 35689999999999999999997766554
No 104
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=60.36 E-value=3.2 Score=35.33 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhh
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
+..+++.++...+...+..|.+...++..+|+|+++|++++.
T Consensus 33 RedL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 33 RNELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346888888887778888899999999999999999998653
No 105
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=60.09 E-value=4.9 Score=32.91 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=29.9
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+|+..+|++++||++.+++...
T Consensus 43 glt~~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 43 EISLPQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp TCCHHHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 3333332 34789999999999999999998876554
No 106
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=59.66 E-value=4 Score=29.41 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCCHH-HHHHhheeccccccchhhhhcccc----cccchhhhhhhhHHH
Q 015913 80 RIKIE-EQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e-~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~r~~~~v~~ 123 (398)
.+++. ..++.+|+. ..+.+..+|+..++ ++.+||++++++..+
T Consensus 6 ~lt~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 35553 446666666 45789999999997 689999988776655
No 107
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=59.54 E-value=4.6 Score=31.76 Aligned_cols=43 Identities=5% Similarity=0.011 Sum_probs=30.5
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++||++.+++..+
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 30 DISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4565443 3334432 34679999999999999999998776554
No 108
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=59.25 E-value=4.9 Score=32.03 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=30.0
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+-..+....-..+.+..+++..+|++++|+++.+++..+
T Consensus 28 ~lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp TCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35554433222222234689999999999999999998776554
No 109
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.24 E-value=4.4 Score=32.40 Aligned_cols=43 Identities=9% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++||++.+++..+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666554 3333333 33788999999999999999998876655
No 110
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=59.16 E-value=3.2 Score=37.04 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCCHHHHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..|+. ..+..++|...|+|+.|++|+++++.+
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46889999988877643 246789999999999999998877655
No 111
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=59.15 E-value=4.4 Score=32.19 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+. ++..|+. ..+.+..+++..+|++++||++.+++...
T Consensus 35 l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 35 LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 555443 3333332 34678999999999999999997766554
No 112
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=59.01 E-value=5.8 Score=31.23 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.2
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||++.++...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999998876655
No 113
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.91 E-value=4 Score=32.31 Aligned_cols=28 Identities=0% Similarity=-0.020 Sum_probs=23.7
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..++++++||++.+++...
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3678999999999999999998766554
No 114
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=58.87 E-value=3.8 Score=32.32 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCHHHH-HHhheecc-ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L-~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+|+.- ..+.+..+|+..++++++|+++.+++...
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555433 34444332 14688999999999999999997766544
No 115
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=58.76 E-value=2.9 Score=36.05 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=35.7
Q ss_pred CCCHHHHHHhheecccc-----------ccchhhhhcccccccchhhhhhhhHHHH
Q 015913 80 RIKIEEQLAIFMFIVGH-----------NLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~-----------~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
..+++++++-+|..++. ..+..++|...|+|++|++|+++++.+.
T Consensus 150 ~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 150 LKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 35778899887765442 3578899999999999999998877663
No 116
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=58.67 E-value=2.4 Score=36.21 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCHHHHHHhheeccc-------cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG-------HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~-------~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++-+|..++ ...+..++|...|+|++|++|+++++.+
T Consensus 139 ~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 139 FEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3568899998887653 2357899999999999999998887665
No 117
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.53 E-value=4.4 Score=31.94 Aligned_cols=43 Identities=7% Similarity=-0.062 Sum_probs=30.9
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++..|+. ..+.+..+++..+|++++||++.+++..+
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666544 3344433 33789999999999999999997766554
No 118
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=58.07 E-value=1.6 Score=29.99 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.9
Q ss_pred ccchhhhhcccccccchhhhhh
Q 015913 97 NLRTRAVQELFRYSGETISRHF 118 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~ 118 (398)
+.++..+|...|||++||+++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 4588999999999999999985
No 119
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=57.99 E-value=5.7 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.4
Q ss_pred cccchhhhhccc-----ccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELF-----RYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~f-----gis~stv~r~~~~v~~ 123 (398)
...+..+|+..+ ++|.+||+|.++...+
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 357888999999 9999999998876655
No 120
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=57.91 E-value=3.9 Score=41.86 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhheecc---ccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 79 NRIKIEEQLAIFMFIV---GHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L---~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
..+|+.++-.+.|+++ +.|.++..+|..+|+|.+||..+.++.+..|
T Consensus 549 ~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 3689999988888876 2688999999999999999999888766655
No 121
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=57.45 E-value=4.1 Score=30.41 Aligned_cols=28 Identities=14% Similarity=0.219 Sum_probs=23.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||++.++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998876554
No 122
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.43 E-value=4.6 Score=32.53 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+ -..+.+..+|+..++++++||++.+++..+
T Consensus 38 ~lt~~q~~iL~~l~-~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 38 GITYSQYLVMLTLW-EENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp TCCHHHHHHHHHHH-HSSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 333332 245789999999999999999998776654
No 123
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=57.34 E-value=6 Score=31.97 Aligned_cols=44 Identities=5% Similarity=0.152 Sum_probs=29.9
Q ss_pred CCCHHHH-HHhheecccc-ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~-~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++..+- ++..|+.-.. +.+..+|+...+++++|+++++++..+
T Consensus 32 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 32 GLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp TCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3555443 3333333322 478999999999999999998776554
No 124
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=57.27 E-value=4.6 Score=32.56 Aligned_cols=43 Identities=5% Similarity=0.144 Sum_probs=31.0
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..++++++||++++++...
T Consensus 44 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4666544 3333433 45689999999999999999998776554
No 125
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=57.11 E-value=4.7 Score=31.86 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCCHHHH-HHhheeccc-cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~-~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+.-+ .+.+..+++..++++++|+++.+++..+
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3444333 344444333 3789999999999999999998876554
No 126
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=57.01 E-value=2.9 Score=29.53 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.8
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
-..|.++.++|...|+|++|++++-+
T Consensus 21 ~~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 21 KKLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 45689999999999999999999754
No 127
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=56.91 E-value=5.8 Score=31.54 Aligned_cols=42 Identities=5% Similarity=0.187 Sum_probs=30.8
Q ss_pred CCCHHHHH-HhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQL-AIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l-~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+.. +..|+. ++.+..+++..+|+|++||++.+++...
T Consensus 35 ~lt~~~~~iL~~l~~--~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE--ESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp CCCHHHHHHHHHHTT--CCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67776543 343432 3399999999999999999997766544
No 128
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=56.90 E-value=6.3 Score=31.79 Aligned_cols=43 Identities=7% Similarity=0.110 Sum_probs=30.1
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++||++.+++...
T Consensus 40 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp TCCHHHHHHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 3333332 34689999999999999999997766554
No 129
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.82 E-value=4.4 Score=32.25 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=31.3
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+-..+....-..+.+..+++..++++++|+++.+++..+
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 46665543333222235789999999999999999998776554
No 130
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=56.77 E-value=5.2 Score=31.56 Aligned_cols=44 Identities=7% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCCHHHH-HHhheecccc-ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~-~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++..|+.-.. +.+..+++..+|++++||++.+++..+
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 3555443 4444444332 689999999999999999997766554
No 131
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=56.74 E-value=18 Score=27.97 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHhcCCccccCCCCCHHHHHHhhee-ccccccchhhhhcccccccchhhhhhhhHHHH
Q 015913 56 RMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMF-IVGHNLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 56 rms~~~F~~L~~~l~~~~~~~~~~~~s~e~~l~~~L~-~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
.|+.+.|.-|++.-+-+ . +++..+|+ +|-.|.+-..+++++||+++-.++.+++.-..
T Consensus 29 ~vsee~F~LLlelS~Ir----------S-ekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v 87 (111)
T 3m8j_A 29 SMSEEQFFLLIGISSIH----------S-DRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRL 87 (111)
T ss_dssp CSCHHHHHHHHHHSCCC----------C-HHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCC----------C-HHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56778887777765422 2 45555555 78899999999999999999999888766543
No 132
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=56.65 E-value=4.8 Score=32.83 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=30.3
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..+|++++||++.+++..+
T Consensus 49 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 49 GLSTAKMRALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp TCCHHHHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3555443 3333433 34689999999999999999998776554
No 133
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=56.62 E-value=3.3 Score=29.30 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=32.9
Q ss_pred CCHHHHHHhheeccccc-cchhhhhcccccccchhhhhhh
Q 015913 81 IKIEEQLAIFMFIVGHN-LRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 81 ~s~e~~l~~~L~~L~~~-~~~~~l~~~fgis~stv~r~~~ 119 (398)
---++++..++..+..| .|....|..|||..+|+..-++
T Consensus 13 ~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk 52 (70)
T 2cob_A 13 QYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVK 52 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHH
Confidence 34578888888888889 7999999999999999986544
No 134
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=56.57 E-value=5.3 Score=32.15 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+| -..+.+..+++..+|++++||++.+++..+
T Consensus 35 ~lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 35 GISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp TCCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 33333 455789999999999999999997766554
No 135
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=56.55 E-value=4.1 Score=32.62 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=23.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..++|..+|+|++||++.+++...
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998776544
No 136
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=56.50 E-value=4.4 Score=32.17 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCH-HHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKI-EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~-e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++ +-.++..|+.-..+.+..+++..+|++++||++.+++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 444 3344455533455789999999999999999998766554
No 137
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=56.22 E-value=2.1 Score=29.94 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=19.4
Q ss_pred cchhhhhcccccccchhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHF 118 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~ 118 (398)
.++..+|+.+|+|+++||+++
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~ 34 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVL 34 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999976
No 138
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=56.06 E-value=2.9 Score=31.39 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhheecc--ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIV--GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L--~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.++++++.+.+-+.+- ..|.++++|+...+++++||.+++.+...
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677766655544444 23899999999999999999988776643
No 139
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=55.61 E-value=4.6 Score=32.22 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=30.9
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
++++.+. ++..|+. ..+.+..+++..++++++||++.+++....
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 37 NITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 4555443 3333333 336789999999999999999988766653
No 140
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=55.54 E-value=4.1 Score=31.27 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 86 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 86 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++..|. ..+.+..+++..+|+|++||++.++...+
T Consensus 29 ~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 29 QILDLLA--QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp HHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444443 35678999999999999999998876655
No 141
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.53 E-value=5.1 Score=32.07 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=30.8
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 39 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 39 PITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp SSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4665443 3444443 34689999999999999999998766554
No 142
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=55.34 E-value=5.2 Score=31.57 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+++|++||++.+++..+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998766554
No 143
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=55.24 E-value=3.3 Score=27.90 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.3
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4688999999999999999999775
No 144
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=55.20 E-value=5.2 Score=32.11 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++..|+. ..+.+..+++..+|++++|+++.+++...
T Consensus 37 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3555443 3334433 34789999999999999999997766544
No 145
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.17 E-value=5.1 Score=31.79 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+++..++++++||++.+++...
T Consensus 30 ~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 30 GITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp TCCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 3555443 3333333 34689999999999999999998776554
No 146
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.15 E-value=5 Score=33.16 Aligned_cols=44 Identities=2% Similarity=0.018 Sum_probs=32.2
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+|+....+.+..+|+..++++++||++.+++..+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 4666543 4444444456789999999999999999998766554
No 147
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=55.07 E-value=5.2 Score=32.05 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=18.2
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..++++++|+++.+++..+
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4788999999999999999998776554
No 148
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=54.71 E-value=5.4 Score=31.39 Aligned_cols=43 Identities=5% Similarity=0.108 Sum_probs=29.8
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+ -..+.+..+++..+|++++|+++++++...
T Consensus 31 ~lt~~~~~iL~~l~-~~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 31 DITAAQFKVLCSIR-CAACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp TSCHHHHHHHHHHH-HHSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hcCCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3555444 333333 234678999999999999999998776554
No 149
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=54.61 E-value=2.7 Score=34.18 Aligned_cols=32 Identities=9% Similarity=-0.024 Sum_probs=27.3
Q ss_pred heeccccccchhhhhccccc-ccchhhhhhhhH
Q 015913 90 FMFIVGHNLRTRAVQELFRY-SGETISRHFNNV 121 (398)
Q Consensus 90 ~L~~L~~~~~~~~l~~~fgi-s~stv~r~~~~v 121 (398)
.+.+++.|.+.+.++..+|| |.+|+++++++-
T Consensus 21 I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 21 ICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 34455779999999999999 999999998874
No 150
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=54.42 E-value=3.5 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.3
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4588999999999999999999865
No 151
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=54.34 E-value=3.4 Score=29.51 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=21.3
Q ss_pred cccchhhhhcccccccchhhhhhhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.| ++.++|...|||++||+++.+.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 47 8999999999999999998763
No 152
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=54.21 E-value=5.5 Score=32.08 Aligned_cols=43 Identities=5% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++..|+. ..+.+..+++...+++++||++++++..+
T Consensus 38 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 38 GLTIQQLAMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp TCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3565443 4444443 34689999999999999999997766554
No 153
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=54.10 E-value=7.1 Score=33.68 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCHHHHHHhheeccc-------------cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG-------------HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~-------------~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+++++++.+|..|+ -..+..++|...|+|+.|++|+++++.+
T Consensus 150 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 150 QKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp HSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4688999998885432 2357889999999999999998887654
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=53.91 E-value=3.7 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.++.+||...|+|++|++++...
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 56899999999999999999988764
No 155
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.74 E-value=4.7 Score=32.45 Aligned_cols=43 Identities=7% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+- ++..|+.-..+.+..+++..++++++|+++.+++..+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 444333 3333333333569999999999999999997765543
No 156
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=53.62 E-value=2.8 Score=35.92 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHhheeccccccchhhhhcccccccchhhhhhhh
Q 015913 85 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 85 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+++--...++..|.+...+|..+|||.+|++++++.
T Consensus 146 ~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 146 AEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444556678999999999999999999998764
No 157
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=53.55 E-value=6.1 Score=32.12 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=24.2
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..+++..+|++++||++.+++...
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34678899999999999999998776554
No 158
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=53.53 E-value=5.4 Score=30.48 Aligned_cols=27 Identities=4% Similarity=0.178 Sum_probs=23.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+..+++..+|+|++||++.+.....
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478899999999999999997766554
No 159
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.09 E-value=3.8 Score=28.14 Aligned_cols=25 Identities=4% Similarity=-0.068 Sum_probs=21.8
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4578999999999999999998764
No 160
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=53.06 E-value=2.8 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=1.0
Q ss_pred CCCHHHHHHhheeccc---cccchhhhhcccccccchhhhhhhhHH
Q 015913 80 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
..+++++++-+|..+. ...+..++|...|+++.|++|++++..
T Consensus 148 ~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 148 MYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HC--------------------------------------------
T ss_pred cCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 4567778887776543 346889999999999999999987653
No 161
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=52.79 E-value=5 Score=32.32 Aligned_cols=43 Identities=5% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++..|+. ..+.+..+++..+|++++||++.+++...
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp TCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4565554 3333332 34679999999999999999998776554
No 162
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=52.78 E-value=14 Score=29.86 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=22.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+..+|+...+++++|+++.+++...
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 368999999999999999998876543
No 163
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=52.57 E-value=4 Score=29.50 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.4
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
-..|.++.++|...|+|++|++++.+.
T Consensus 28 ~~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 345889999999999999999998763
No 164
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=52.56 E-value=3.9 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=22.9
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.++.++|...|+|++|++++.+-
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45889999999999999999998763
No 165
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=52.51 E-value=4.1 Score=32.38 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCHHH-HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+ .++..|+. ..+.+..+++..+++|++||++.+++...
T Consensus 27 lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp CTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 44433 33444433 33679999999999999999998776554
No 166
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=52.43 E-value=5.2 Score=30.57 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 85 EQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 85 ~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+++..| -..+.+..+++..+|+|++||+++++...+
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 344678999999999999999998765543
No 167
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=52.11 E-value=4.2 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=34.3
Q ss_pred CHH-HHHHhheecccc-------------ccchhhhhcccccccchhhhhhhhHHH
Q 015913 82 KIE-EQLAIFMFIVGH-------------NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 82 s~e-~~l~~~L~~L~~-------------~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++. ++++-+|..++. ..+..++|...|+|+.|++|++++..+
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 146 QNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 345 899888887753 357899999999999999998887665
No 168
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=52.04 E-value=18 Score=27.67 Aligned_cols=74 Identities=16% Similarity=0.072 Sum_probs=46.3
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHHhcCCccc----c--C-CCCCHHHHHHhheeccc--cccchhhhhccc---c-----
Q 015913 46 GQSERCLENFRMDKKVFYKLCDILQSKGLLR----H--T-NRIKIEEQLAIFMFIVG--HNLRTRAVQELF---R----- 108 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~~~l~~~~~~~----~--~-~~~s~e~~l~~~L~~L~--~~~~~~~l~~~f---g----- 108 (398)
.+-.+.-+.|++++.++...+.......... . . ..++++..-.+ +.++. ...+...++..+ |
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i-~~~~~~~~~~s~~~i~~~l~~~g~~~~~ 112 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRI-EEYKRSSPGMFSWEIREKLIREGVCDRS 112 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHH-HHTTTTCTTCCHHHHHHHHHHTSSSCST
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHH-HHHHHhCcchHHHHHHHHHHHcCCcccc
Confidence 4667788899999999999888765322111 1 1 23555332222 22232 246788888888 6
Q ss_pred --cccchhhhhhhh
Q 015913 109 --YSGETISRHFNN 120 (398)
Q Consensus 109 --is~stv~r~~~~ 120 (398)
+|.+||++++++
T Consensus 113 ~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 113 TAPSVSAISRLVRG 126 (128)
T ss_dssp TCCCHHHHHHHC--
T ss_pred CCcCHHHHHHHHHh
Confidence 599999998764
No 169
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=51.96 E-value=3.7 Score=29.23 Aligned_cols=22 Identities=0% Similarity=-0.068 Sum_probs=19.5
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+...+|..+|||++||+++++.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 4889999999999999999753
No 170
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.88 E-value=5.5 Score=29.92 Aligned_cols=28 Identities=7% Similarity=0.157 Sum_probs=23.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||+++++...+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998776554
No 171
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=51.83 E-value=6.1 Score=29.99 Aligned_cols=25 Identities=24% Similarity=0.133 Sum_probs=21.1
Q ss_pred ccchhhhhcccccccchhhhhhhhH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+.+++.+|...||+.||+||+-+..
T Consensus 23 ~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 5678999999999999999954444
No 172
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=51.82 E-value=5.4 Score=36.94 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=20.8
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46889999999999999999975
No 173
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=51.74 E-value=4.1 Score=27.76 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=21.9
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999998754
No 174
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=51.73 E-value=10 Score=31.02 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCCHHHH-HHhheecc-ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L-~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+|+.. ..+.+..+|+..++++++||++++++...
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3555443 44444443 25789999999999999999998776554
No 175
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=51.37 E-value=15 Score=29.51 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=48.1
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHHhcCCccc-----c--CCCCCHHHHHHhheeccc--cccchhhhhccc--------c
Q 015913 46 GQSERCLENFRMDKKVFYKLCDILQSKGLLR-----H--TNRIKIEEQLAIFMFIVG--HNLRTRAVQELF--------R 108 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~~~l~~~~~~~-----~--~~~~s~e~~l~~~L~~L~--~~~~~~~l~~~f--------g 108 (398)
.+-.+.-+.|++++.++...+......+... + ...++.+..-.+ +.++. ...+...++..+ |
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~g 127 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKI-AEYKRQNPTMFAWEIRDRLLAERVCDND 127 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHH-HHHHHHCTTCCHHHHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHH-HHHHHhCcchhHHHHHHHHHHhcccccC
Confidence 4667788899999999999988765432111 1 124565433222 22232 235677777766 6
Q ss_pred --cccchhhhhhhhHH
Q 015913 109 --YSGETISRHFNNVL 122 (398)
Q Consensus 109 --is~stv~r~~~~v~ 122 (398)
+|.+||++++++..
T Consensus 128 ~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 128 TVPSVSSINRIIRTKV 143 (149)
T ss_dssp TSCCHHHHHHHHHCC-
T ss_pred CCcCHHHHHHHHHHHh
Confidence 79999999887544
No 176
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=51.29 E-value=6.8 Score=31.74 Aligned_cols=43 Identities=7% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCHHH-HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEE-QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~-~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+ .++..|+.-..+.+..+|+..+|++++|+++.+++..+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55544 34444433445789999999999999999998776655
No 177
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.85 E-value=5.1 Score=32.44 Aligned_cols=43 Identities=7% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+. ++.+|+. ..+.+..+++..++++++||++.+++..+
T Consensus 41 ~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555443 3344433 23689999999999999999998776655
No 178
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=50.79 E-value=5.8 Score=32.37 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=29.7
Q ss_pred CCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+- ++..|+. ..+.+..+|+..+|++++|+++.+++..+
T Consensus 51 lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp CCHHHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 454433 3333333 34789999999999999999998776554
No 179
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=50.42 E-value=4.1 Score=31.77 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=24.1
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..+++..+|+|++||++.++...+
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 45678999999999999999998765544
No 180
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=50.39 E-value=9.3 Score=32.25 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=31.9
Q ss_pred CCHHHH-HHhheecc-ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQ-LAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~-l~~~L~~L-~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++.+- ++.+|+.. ..+.+..+|+..+|++++||++++++...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666554 44455544 35789999999999999999997766544
No 181
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=50.32 E-value=4.3 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 3578899999999999999999765
No 182
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=50.31 E-value=6.6 Score=31.19 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=22.2
Q ss_pred chhhhhcccccccchhhhhhhhHHH
Q 015913 99 RTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+..+++..+|++++|+++.+++..+
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 9999999999999999998776554
No 183
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=50.06 E-value=6.4 Score=32.46 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+. ..+.+..+|+..+|++++||++.+++..+
T Consensus 42 ~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 42 NITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp SCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555443 3444433 34789999999999999999998766554
No 184
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.01 E-value=7.7 Score=30.84 Aligned_cols=44 Identities=5% Similarity=0.085 Sum_probs=30.4
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++..|+.-..+.+..+++..+|++++||++.+++...
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 3444433 3333333245789999999999999999998776554
No 185
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=48.60 E-value=5.4 Score=35.14 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHhheecccc-ccch--hhhhcccccccchhhhhhhhHHH
Q 015913 83 IEEQLAIFMFIVGH-NLRT--RAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 83 ~e~~l~~~L~~L~~-~~~~--~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.++.++-+|+.|.. |.+. .+++..+++|++|+++.+++...
T Consensus 7 ~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~ 50 (230)
T 1fx7_A 7 TTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMER 50 (230)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46777778887753 6666 99999999999999997776554
No 186
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=48.42 E-value=4.6 Score=28.32 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.6
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.++.++|...|+|++|++++.+-
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45889999999999999999997653
No 187
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=47.90 E-value=5.1 Score=28.01 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.3
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4688999999999999999999765
No 188
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=47.73 E-value=7.4 Score=31.96 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.5
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..+|+..+|+|++||++.++...+
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL~~L~~ 97 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45688999999999999999998876544
No 189
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=47.39 E-value=3.7 Score=31.40 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred ccccccchhhhhcccccccchhhhhhh
Q 015913 93 IVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 93 ~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
+...|.++.++|.+.|+|++|++++=+
T Consensus 45 R~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 45 RLNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 446799999999999999999998643
No 190
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=47.20 E-value=4.8 Score=30.31 Aligned_cols=29 Identities=14% Similarity=0.345 Sum_probs=24.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
.+.+..+++..+|+|++|++++++...++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35789999999999999999988766655
No 191
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.17 E-value=3.8 Score=29.26 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=24.1
Q ss_pred ccccccchhhhhcccccccchhhhhhhh
Q 015913 93 IVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 93 ~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+...|.++.++|...|+|+++++++.+-
T Consensus 19 R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 19 RKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4456899999999999999999998764
No 192
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=47.14 E-value=6.1 Score=30.97 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.0
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||+++++....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999998876554
No 193
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.12 E-value=4.7 Score=37.14 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.6
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 36789999999999999999975
No 194
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=47.10 E-value=6.3 Score=26.63 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.5
Q ss_pred ccchhhhhccc-----ccccchhhhhhh
Q 015913 97 NLRTRAVQELF-----RYSGETISRHFN 119 (398)
Q Consensus 97 ~~~~~~l~~~f-----gis~stv~r~~~ 119 (398)
..+..++++.+ ++|.+||+|.++
T Consensus 19 ~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 19 IETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 46788999999 999999999887
No 195
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=46.76 E-value=5.4 Score=27.55 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=22.1
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|+++++++.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4588999999999999999999765
No 196
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=45.97 E-value=5.6 Score=34.74 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=35.3
Q ss_pred CCCHHHHHHhheeccc--------------c-ccchhhhhccccccc-chhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG--------------H-NLRTRAVQELFRYSG-ETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~--------------~-~~~~~~l~~~fgis~-stv~r~~~~v~~ 123 (398)
..+++++++-+|..|+ - ..+..++|...|+|+ .|++|+++++.+
T Consensus 137 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 137 INGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4678899998887643 2 467889999999999 599999887755
No 197
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=45.91 E-value=5.7 Score=27.65 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.2
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999999865
No 198
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=45.63 E-value=5.1 Score=37.07 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.8
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+.++||...|||.+||||+++.
T Consensus 2 ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 4679999999999999999874
No 199
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=45.55 E-value=5.6 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.6
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|++|++++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34588999999999999999999865
No 200
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=45.48 E-value=5.1 Score=27.88 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.2
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+..++|..+|||.+|+.+++..
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 5678999999999999998764
No 201
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.44 E-value=5.6 Score=27.63 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3578999999999999999999765
No 202
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=45.40 E-value=5.5 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.9
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
-..|.++.++|..+|+|++|++++-+
T Consensus 81 ~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 81 KKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 45689999999999999999999754
No 203
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=45.29 E-value=5.3 Score=32.53 Aligned_cols=36 Identities=6% Similarity=0.304 Sum_probs=27.4
Q ss_pred HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 87 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 87 l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++..|+. ..+.+..+|+..++++++|+++++++..+
T Consensus 55 vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 55 FLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444433 35689999999999999999998876554
No 204
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=45.19 E-value=15 Score=30.59 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=32.0
Q ss_pred CCCHHH-HHHhheecccc--ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEE-QLAIFMFIVGH--NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~-~l~~~L~~L~~--~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+ .++..|+.-+. +.+..+|+..++++++||++.+++...
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355544 34555554443 389999999999999999998876655
No 205
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=45.03 E-value=9.9 Score=30.36 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred CCCHH-HHHHhheeccccccchhhhhcccc----cccchhhhhhhhHHH
Q 015913 80 RIKIE-EQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e-~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~r~~~~v~~ 123 (398)
++++. ..++.+||....+.+..+|+..++ ++.+||++++++..+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK 54 (138)
T ss_dssp GCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 35554 446666665445789999999997 899999987766554
No 206
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=45.01 E-value=7.7 Score=34.32 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhh
Q 015913 78 TNRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 78 ~~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
+..+++.++...+...+..|.+...+|..+|+|+++|++++.
T Consensus 115 R~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 115 REDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp STTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346888777666666668899999999999999999987664
No 207
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=44.84 E-value=12 Score=30.27 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++|+++.+++..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999998766544
No 208
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=44.83 E-value=9.1 Score=29.14 Aligned_cols=24 Identities=4% Similarity=0.073 Sum_probs=20.4
Q ss_pred chhhhhcccccccchhhhhhhhHH
Q 015913 99 RTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+.++++..||+|++||.+.+....
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~ 68 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLE 68 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 788999999999999998665543
No 209
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=44.67 E-value=8.2 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=31.3
Q ss_pred CCCHHH-HHHhheeccccccchhhhhcccc----cccchhhhhhhhHHH
Q 015913 80 RIKIEE-QLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~-~l~~~L~~L~~~~~~~~l~~~fg----is~stv~r~~~~v~~ 123 (398)
++++.+ .++.+|+. ..+.+..+|+..++ ++++||++++++..+
T Consensus 7 ~lt~~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 7 EISSAEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp CCCHHHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 455544 34555554 45789999999999 789999998876654
No 210
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=44.50 E-value=6.2 Score=28.69 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=22.8
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|++|++++-+
T Consensus 24 ~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 24 LDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 45689999999999999999999754
No 211
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=44.44 E-value=6.2 Score=29.12 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=22.1
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4578999999999999999999865
No 212
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=44.38 E-value=6.3 Score=28.37 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.5
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4588999999999999999999876
No 213
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=43.98 E-value=8.4 Score=29.01 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.8
Q ss_pred chhhhhcccccccchhhhhhhhH
Q 015913 99 RTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v 121 (398)
+.++++..||+|++||++.+...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999877543
No 214
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=43.97 E-value=6.5 Score=30.04 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..++-+.|.-.+ +-..|.++.++|...|||++|++++.+
T Consensus 11 ~~~pG~~Lk~~l-r~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 11 PIHPGEILAEEL-GFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCHHHHHHHHH-HHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455655554311 235689999999999999999999776
No 215
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=43.83 E-value=5.9 Score=37.05 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.7
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCHHHHHHHhCCCHHHHHHHHCC
Confidence 56889999999999999999963
No 216
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=43.82 E-value=11 Score=33.78 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=34.1
Q ss_pred CCCHHHHHHhheeccc---cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+..-++.+-.|..|+ .+.+..+|+...|++++|++|+++...+
T Consensus 9 ~v~s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~ 55 (257)
T 2g7u_A 9 YIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK 55 (257)
T ss_dssp CCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666666666665 3578999999999999999998876554
No 217
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.79 E-value=11 Score=30.42 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=23.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++||++.+++..+
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999998766544
No 218
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.64 E-value=12 Score=30.40 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.4
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++|+++.+++..+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999998776654
No 219
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=43.39 E-value=5 Score=37.01 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999986
No 220
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=43.37 E-value=11 Score=30.58 Aligned_cols=27 Identities=4% Similarity=-0.029 Sum_probs=23.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++|+++.+++..+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999998776544
No 221
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=43.30 E-value=5 Score=36.96 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=0.0
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+.++||...|||.+||||+++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5789999999999999999986
No 222
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=43.07 E-value=6.2 Score=27.55 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=19.9
Q ss_pred cchhhhhcccccccchhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~ 119 (398)
.++..+|+.+||++++||++++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999999863
No 223
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=43.01 E-value=11 Score=33.82 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCHHHHHHhheecccc---ccchhhhhcccccccchhhhhhhhHHH
Q 015913 81 IKIEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 81 ~s~e~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++.-++.+-.|..|+. +.+..+|+...|+++||++|+++....
T Consensus 2 i~sl~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~ 47 (260)
T 3r4k_A 2 MGTVSKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE 47 (260)
T ss_dssp CCHHHHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455666666666663 478999999999999999998876655
No 224
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=42.78 E-value=7.2 Score=34.74 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=30.0
Q ss_pred HHHHHHhheeccc---cccchhhhhcccccccchhhhhhhhHHH
Q 015913 83 IEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 83 ~e~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.-++.+-.|..|+ .+.+..+|+...|++++|++|+++...+
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~ 49 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE 49 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444455554 2578999999999999999998876554
No 225
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.53 E-value=8.5 Score=29.93 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=23.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||+++++...+
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~ 60 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578899999999999999998765443
No 226
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=42.40 E-value=9 Score=27.69 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=22.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+..+++..|++|..||.+.+....+
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999987665443
No 227
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=42.35 E-value=15 Score=26.40 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=27.6
Q ss_pred CHHHHHHhheeccccc--cchhhhhcccccccchhhhhhhhH
Q 015913 82 KIEEQLAIFMFIVGHN--LRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 82 s~e~~l~~~L~~L~~~--~~~~~l~~~fgis~stv~r~~~~v 121 (398)
.+-+++.-++..|..| .+...||..+|+++++|.|++...
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444554455556555 478899999999999988765443
No 228
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=42.34 E-value=5.3 Score=37.23 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 36789999999999999999986
No 229
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=42.14 E-value=7.7 Score=34.41 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred HHHHHHhheecccc---ccchhhhhcccccccchhhhhhhhHHH
Q 015913 83 IEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 83 ~e~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.-++.+-.|..|+. +.+..+|+...|++++|++|+++...+
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~ 47 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE 47 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455555555542 578999999999999999998765544
No 230
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=42.07 E-value=6.8 Score=27.91 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=22.2
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4688999999999999999998765
No 231
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=41.80 E-value=5.4 Score=36.86 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999974
No 232
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=41.74 E-value=7.8 Score=26.51 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=21.9
Q ss_pred ccccchhhhhcccc--cccchhhhhhh
Q 015913 95 GHNLRTRAVQELFR--YSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fg--is~stv~r~~~ 119 (398)
..|.++.++|...| +|++|++++.+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 45889999999999 99999998765
No 233
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=41.72 E-value=11 Score=33.73 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=35.0
Q ss_pred CCCHHHHHHhheeccc---cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+..-++.+-.|..|+ .+.+..+|+...|++++|++|+++...+
T Consensus 18 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~ 64 (260)
T 2o0y_A 18 GVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA 64 (260)
T ss_dssp CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666677777777775 3688999999999999999998876554
No 234
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=41.50 E-value=13 Score=30.08 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=23.4
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++|+++.+++..+
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999998776654
No 235
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=41.46 E-value=7.4 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.8
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
-..|.++.++|...|+|++|++++.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45689999999999999999999764
No 236
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=41.46 E-value=5.5 Score=37.05 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhhH
Q 015913 98 LRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~v 121 (398)
.+.++||...|||.+||||+++.-
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 367899999999999999999863
No 237
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=41.46 E-value=7.3 Score=28.79 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.3
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
...|.++.++|...|||++|++++.+-
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 346889999999999999999997653
No 238
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=41.42 E-value=5.6 Score=36.81 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 46789999999999999999984
No 239
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=41.31 E-value=6.8 Score=27.89 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=23.1
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
...|.++.++|...|+|++|++++-+-
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 21 LEKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 346899999999999999999997653
No 240
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=41.30 E-value=7.1 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.3
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
...|.++.++|...|+|++|++++.+-
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 346889999999999999999998763
No 241
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=41.27 E-value=10 Score=35.15 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred hheeccccccchhhhhcccccccchhhhhhhhHH
Q 015913 89 IFMFIVGHNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 89 ~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+...+...+.+..+++..||+|++||+|-+...-
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~ 46 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR 46 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3334556679999999999999999999876543
No 242
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=41.22 E-value=5.6 Score=36.69 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 35789999999999999999986
No 243
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.04 E-value=11 Score=32.53 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=31.2
Q ss_pred CCCHHHH-HHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+|+. ..+.+..+|+..++++++|+++.+++...
T Consensus 45 gLt~~q~~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp TCCHHHHHHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4666554 3444443 34789999999999999999998766554
No 244
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=41.02 E-value=13 Score=29.94 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++||++.+++..+
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999988776544
No 245
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=40.45 E-value=10 Score=30.12 Aligned_cols=27 Identities=4% Similarity=0.084 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.+++..+|+|++|+++.+++..+
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999998776654
No 246
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=40.38 E-value=7.6 Score=28.53 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.7
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.+..++|...|+|++|++++.+.
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 45789999999999999999998763
No 247
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=40.19 E-value=7.8 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.1
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4588999999999999999998765
No 248
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=39.98 E-value=6 Score=36.85 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=0.0
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+.++||...|||.+||||+++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 35789999999999999999974
No 249
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=39.80 E-value=10 Score=27.86 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=24.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++|+++.++...+
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4678999999999999999998876655
No 250
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=39.72 E-value=7.7 Score=29.17 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++.+
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999999875
No 251
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=39.58 E-value=7.8 Score=28.95 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=22.0
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|||++|++++-+
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4688999999999999999998754
No 252
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=39.31 E-value=12 Score=33.62 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=34.4
Q ss_pred CCCHHHHHHhheeccc---cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.++.-++.+-.|..|+ .+.+..+|+...|++++|++|+++....
T Consensus 16 ~v~sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~ 62 (265)
T 2ia2_A 16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE 62 (265)
T ss_dssp CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666666666665 3578999999999999999998876655
No 253
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=37.75 E-value=14 Score=30.20 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++||++.+++..+
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999999999998776544
No 254
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=37.65 E-value=9 Score=26.45 Aligned_cols=23 Identities=4% Similarity=0.041 Sum_probs=19.5
Q ss_pred cchhhhhcccccccchhhhhhhh
Q 015913 98 LRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.+..+++..+|+|++|+.+.++.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 35678999999999999998764
No 255
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=37.59 E-value=6.9 Score=33.37 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHhheeccccccchhhhhcccccccchhhhhhhhHHHH
Q 015913 87 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNA 124 (398)
Q Consensus 87 l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~ 124 (398)
+--...++..|.+...+|..+|+|.+|++++++..-.+
T Consensus 148 v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 148 WEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 33333455679999999999999999999988764443
No 256
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=37.54 E-value=8.9 Score=32.58 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
.++..|.- .|.+|+.|.+..+++...++|..||..++.+..+-|.
T Consensus 154 ~Lt~rE~~--vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 154 QLTPRERD--ILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GSCHHHHH--HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHH--HHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 46766553 4556788999999999999999999999998887763
No 257
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=36.98 E-value=15 Score=27.86 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=24.2
Q ss_pred ccccchhhhhccc-ccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELF-RYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~f-gis~stv~r~~~~v~~ 123 (398)
..+.++.+++... |+|++|+++.+++..+
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3458999999999 9999999998776554
No 258
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.66 E-value=10 Score=28.14 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=21.0
Q ss_pred ccchhhhhcccccccchhhhhhhhH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
..+..+|+..|++|..||.+.+...
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678899999999999999866543
No 259
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=35.57 E-value=9.1 Score=33.59 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHhheeccc-cccch--hhhhcccccccchhhhhhhhHHH
Q 015913 84 EEQLAIFMFIVG-HNLRT--RAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 84 e~~l~~~L~~L~-~~~~~--~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.++.+||.+. .|.+. .++|..++++++||++.+++..+
T Consensus 8 ~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~ 50 (226)
T 2qq9_A 8 TEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMER 50 (226)
T ss_dssp HHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677777774 35555 89999999999999997776554
No 260
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=35.36 E-value=7.9 Score=32.62 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=23.8
Q ss_pred ccccccchhhhhcccccccchhhhhhh
Q 015913 93 IVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 93 ~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
++..|.+...++..+|+|.+|++++++
T Consensus 154 ~~~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 154 MWQQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 446789999999999999999999875
No 261
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=35.22 E-value=10 Score=27.97 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=22.8
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.++.++|...|+|++|++++.+-
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45889999999999999999998763
No 262
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=35.15 E-value=15 Score=32.65 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=24.8
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+.+..++|..+|++++|+++.++...+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34689999999999999999998876655
No 263
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=35.03 E-value=34 Score=31.48 Aligned_cols=161 Identities=10% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHhhcC---CCHHHHHHHHHHHhcCC-ccc-----cC-CCCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhh
Q 015913 51 CLENFR---MDKKVFYKLCDILQSKG-LLR-----HT-NRIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 51 f~~~fr---ms~~~F~~L~~~l~~~~-~~~-----~~-~~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
+.+.|+ +++.++.+.+....... .+. ++ +.++. +++.-.+ --....+.+.++..++||.+||.+++++
T Consensus 32 l~~~~g~~~vs~~tv~~w~~r~~~g~~~l~~~~r~grp~~~~~-~~i~~~v-~~~~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 32 LVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYED-AELQALL-DEDDAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp HHHHTCSCSCCHHHHHHHHHHHTTCCCCCSCCCCCCCCCSSCH-HHHHHHH-HHCSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHhCCCccccCCCCCCCCCcccH-HHHHHHH-HhCccchHHHHHHHHCCCHHHHHHHHHH
Confidence 445577 99999999998876421 111 11 23444 3333222 2233467889999999999999998776
Q ss_pred HHHHHHHhhccccCCCCCCC--c-c-c------cccCCccccccccceeeecceEEEEEeCC--------CCCCC--CCC
Q 015913 121 VLNAIMAISLDFFQPPGPDV--P-P-E------ISLDPRLYPYFKDCVGAVDGIHIPVMVGV--------DEQGP--FRN 180 (398)
Q Consensus 121 v~~~l~~~~~~~i~~P~~~~--~-~-~------i~~~~~~~~~fp~~iG~IDgt~i~i~~P~--------~~~~~--y~~ 180 (398)
. .+..... ...|.... . . + ++.. .....+++-+-.+|-+.+....+. +.... ...
T Consensus 110 ~--g~~~k~~--~~~~~~l~~~~~~~r~~~~~~~l~~-~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~ 184 (345)
T 3hot_A 110 M--GKIQKVG--RWVPHELNERQMERRKNTCEILLSR-YKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARP 184 (345)
T ss_dssp T--TCEEEEC--CEESSCCCHHHHHHHHHHHHHHHHH-HHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECC
T ss_pred h--CCeeecc--ccccccCChhhhhhhHHHHHHHHHh-hCCcchHHhhhcccceeEEecCccceeeeccCCCCCCCCcCc
Confidence 2 1110011 11121100 0 0 0 0000 000124566777888877643111 11100 111
Q ss_pred CCCccccceeeeecCCcceEEeecCcccccccHHHHHHH
Q 015913 181 KSGLLSQNVLAACSFDLKFHYVLAGWEGSASDLRVLNSA 219 (398)
Q Consensus 181 ~k~~~s~~~q~v~d~~~~~~~v~~g~~Gs~~D~~vl~~s 219 (398)
..+..++.+.++.+.+|.+.+......|+. ++..+.+.
T Consensus 185 ~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-~~~~y~~~ 222 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSGVIYYELLKPGETV-NAARYQQQ 222 (345)
T ss_dssp CTTCCEEEEEEEEESSSEEEEEEECSSCCC-CHHHHHHH
T ss_pred cCcCCcEEEEEEEcccCceeeEecCCCCcc-cHHHHHHH
Confidence 123346678888899997666655433343 45555443
No 264
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=35.01 E-value=11 Score=27.38 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=23.0
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|++|++++.+
T Consensus 23 ~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688999999999999999999876
No 265
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.82 E-value=18 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++||++.+++..+
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 579999999999999999998776544
No 266
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=34.74 E-value=39 Score=27.00 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=22.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+...+|.++|+|.++|.+++...++
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467889999999999999988776655
No 267
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=34.55 E-value=11 Score=28.47 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=22.8
Q ss_pred ccccchhhhhcccccccchhhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..|.++.++|...|+|++|++++.+-
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46889999999999999999997753
No 268
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=34.42 E-value=12 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=29.6
Q ss_pred CCHHHHHHhheec--cccccchhhhhcccccccchhhhhhh
Q 015913 81 IKIEEQLAIFMFI--VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 81 ~s~e~~l~~~L~~--L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
....+.++-.|.. ...|.++.++|...|+|+++++++-+
T Consensus 23 ~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 23 PLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3455556555554 35789999999999999999998765
No 269
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=34.32 E-value=45 Score=28.40 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCCHHHHHHhhee----ccccccchhhhhcccccccchhhhhhhhHHHHHHHhhcccc
Q 015913 80 RIKIEEQLAIFMF----IVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 133 (398)
Q Consensus 80 ~~s~e~~l~~~L~----~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~i 133 (398)
+.+|..-.+.+|| .++...+..+++...|++..|+.++.+.+.+.+....++++
T Consensus 138 g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~~ 195 (207)
T 1c9b_A 138 GRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDF 195 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSSC
T ss_pred CCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHHH
Confidence 4455544333333 45566788999999999999999999888887765545444
No 270
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=34.22 E-value=21 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=20.2
Q ss_pred chhhhhcccccccchhhhhhhhHHH
Q 015913 99 RTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+-++++..||||++||.+.+.....
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6778999999999999886655443
No 271
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=34.13 E-value=12 Score=26.81 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=24.1
Q ss_pred HHhheeccccccchhhhhcccccccchhhhhhh
Q 015913 87 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 87 l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
++-.|..+....++.++|...|+|++|++++-+
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHHc
Confidence 333444444444888999999999999998765
No 272
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=34.06 E-value=46 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhee----ccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 80 RIKIEEQLAIFMF----IVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 80 ~~s~e~~l~~~L~----~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+.+|..-.+.+|| .++...+..+++...|+++.|+.+..+++.+.+.
T Consensus 144 gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 144 GKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 4555554444444 4556678999999999999999999888887763
No 273
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=33.97 E-value=17 Score=28.07 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=31.7
Q ss_pred CCCHHH-HHHhheeccccccchhhhhcccc----cccchhhhhhhhHHH
Q 015913 80 RIKIEE-QLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~-~l~~~L~~L~~~~~~~~l~~~fg----is~stv~r~~~~v~~ 123 (398)
++++.+ .++.+||-. .+.+..+|+..++ ++.+||++++++..+
T Consensus 7 ~Lt~~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp CCCHHHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 455544 566777764 4789999999997 589999987766554
No 274
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.95 E-value=14 Score=32.00 Aligned_cols=39 Identities=13% Similarity=0.390 Sum_probs=28.7
Q ss_pred HHHHhheeccc---cccchhhhhcccccccchhhhhhhhHHH
Q 015913 85 EQLAIFMFIVG---HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 85 ~~l~~~L~~L~---~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
|..+-+++.|. .+.+..++|..+++|++||++.+++..+
T Consensus 5 edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~ 46 (214)
T 3hrs_A 5 EDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLA 46 (214)
T ss_dssp HHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 33444445443 3578999999999999999998876654
No 275
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=33.77 E-value=22 Score=29.09 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=23.6
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+...+..++|..+|+|++||.+.+++...
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~L~~ 53 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRRLER 53 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34468999999999999999987776544
No 276
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=33.77 E-value=19 Score=30.00 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=23.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|++||++.+++..+
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578999999999999999987766544
No 277
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=33.71 E-value=16 Score=27.87 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=24.2
Q ss_pred cccchhhhhccc-ccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELF-RYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~f-gis~stv~r~~~~v~~ 123 (398)
.+.++.+++..+ |++++|+++.+++..+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 468999999999 9999999998876655
No 278
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=33.58 E-value=16 Score=31.15 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
.+.+.+++|..+|+|.+||++.++...
T Consensus 23 ~~~s~~eia~~lgl~~~tv~~~l~~Le 49 (196)
T 3k2z_A 23 YPPSVREIARRFRITPRGALLHLIALE 49 (196)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 357899999999999998877655433
No 279
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=33.20 E-value=19 Score=27.13 Aligned_cols=29 Identities=7% Similarity=0.235 Sum_probs=24.9
Q ss_pred cccccchhhhhcccccccchhhhhhhhHH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+....+..++|..+|+|.+++++.|++.+
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44567888999999999999999998874
No 280
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=33.07 E-value=9.7 Score=32.83 Aligned_cols=44 Identities=9% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
.++..|.- .|.+|+.|.+..+++...++|..||..++.+..+-|
T Consensus 149 ~LT~rE~~--vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 149 GLTDQERT--LLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TSCHHHHH--HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHH--HHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 57776653 345678899999999999999999999988777655
No 281
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=33.06 E-value=12 Score=30.32 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=23.5
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
...|.++.++|...|+|+++++++.+-
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 456889999999999999999998763
No 282
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=32.94 E-value=17 Score=29.78 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=29.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALAR 65 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 78999999999999999999999887776654443
No 283
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.80 E-value=13 Score=29.99 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=23.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.+..+++..+|+|++||++.+++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4578899999999999999998766543
No 284
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=32.76 E-value=20 Score=30.31 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.+..++|..+|+|.+||.+.+.....
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999998876544
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.76 E-value=25 Score=28.37 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=20.1
Q ss_pred cccchhhhhccc-----ccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELF-----RYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~f-----gis~stv~r~~~~v~~ 123 (398)
...+..+|...+ ++|.+||+|.++.+.+
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 345666666666 8999999997765554
No 286
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.54 E-value=12 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.2
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++-+
T Consensus 20 ~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 20 EHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999998765
No 287
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=32.26 E-value=11 Score=32.47 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=24.1
Q ss_pred ccccccchhhhhcccccccchhhhhhhh
Q 015913 93 IVGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 93 ~L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
++..|.+...++..+|+|.+|+.+++++
T Consensus 171 ~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 171 MLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 3457899999999999999999997753
No 288
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=31.99 E-value=13 Score=33.72 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=40.4
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHHHHh
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 128 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~ 128 (398)
.+|+.++-++.|.++. |.++.++|...|++.+||...+.+....+...
T Consensus 111 ~Lp~~~R~v~~L~~~e-g~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~ 158 (286)
T 3n0r_A 111 RIAPRSRQAFLLTALE-GFTPTEAAQILDCDFGEVERLIGDAQAEIDAE 158 (286)
T ss_dssp HHSCHHHHHHHHHHTT-CCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHeeEEEEEeeC-CCCHHHHHHHhCcCHHHHHHHHHHHHhhhhcc
Confidence 5788888888887775 89999999999999999998888877776643
No 289
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=31.98 E-value=15 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=19.4
Q ss_pred chhhhhcccccccchhhhhhhhHH
Q 015913 99 RTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+-+.++..||||++||.+.+....
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 477899999999999998665443
No 290
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=31.94 E-value=27 Score=27.58 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=18.3
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+-+.++..||||++||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 5678999999999999885543
No 291
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=31.80 E-value=12 Score=30.23 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=24.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+.++.+++...|+|++|+++.+++..+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998876655
No 292
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=31.51 E-value=23 Score=30.24 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 86 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 86 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++..|. ..+.+..++|..+|+|++||++.+++..+
T Consensus 24 ~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 24 KILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp HHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444443 34688999999999999999998766543
No 293
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=31.41 E-value=9.6 Score=28.63 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=23.1
Q ss_pred cccccchhhhhcccccccchhhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
...|.++.++|...|+|++|++++-+-
T Consensus 38 ~~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 346899999999999999999997653
No 294
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=30.93 E-value=9.3 Score=28.97 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHhheeccccccchhhhhcccc----cccchhhhhhhhHHH
Q 015913 84 EEQLAIFMFIVGHNLRTRAVQELFR----YSGETISRHFNNVLN 123 (398)
Q Consensus 84 e~~l~~~L~~L~~~~~~~~l~~~fg----is~stv~r~~~~v~~ 123 (398)
+..|+.+||- ..+.+..+|++.++ ++.+||.+++.+..+
T Consensus 37 e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 37 ELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 4456777776 44789999999987 468898887766554
No 295
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=30.88 E-value=9.6 Score=32.06 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.3
Q ss_pred eccccccchhhhhcccccccchhhhhhh
Q 015913 92 FIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 92 ~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
++-.+|.++.++|...|||++|++++-+
T Consensus 98 lR~~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 98 WMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3467899999999999999999988654
No 296
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=30.83 E-value=12 Score=31.43 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=34.4
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
.++..|+-. |.++..|.+..+++..+++|..||..++.+..+-|
T Consensus 142 ~Lt~rE~~v--l~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 142 SLTGREQQV--LQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp TSCHHHHHH--HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHH--HHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 466655543 33467889999999999999999998888877765
No 297
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=30.83 E-value=20 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.2
Q ss_pred cccccchhhhhcccccccchhhhhhhhH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+....+..++|..+|+|.+++++.|++.
T Consensus 20 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 20 IEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455778899999999999999999887
No 298
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=30.78 E-value=13 Score=29.01 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.9
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|+++++++.+
T Consensus 50 ~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35688999999999999999999765
No 299
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=30.73 E-value=21 Score=28.14 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=22.4
Q ss_pred cchhhhhcccccccchhhhhhhhHHH
Q 015913 98 LRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 98 ~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+...||...|+|.+||.+.++...+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999998776655
No 300
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=30.72 E-value=10 Score=31.01 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred cccccchhhhhcccccccchhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRH 117 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~ 117 (398)
...|.++.++|...|+|++|++++
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~ 34 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRY 34 (158)
T ss_dssp ------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 346889999999999999999997
No 301
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=30.69 E-value=23 Score=28.04 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=23.8
Q ss_pred cccchhhhhccc-ccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELF-RYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~f-gis~stv~r~~~~v~~ 123 (398)
.+.++.+++..+ |+|++|+++.+++...
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 457999999999 7999999998876655
No 302
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=30.49 E-value=18 Score=29.61 Aligned_cols=34 Identities=6% Similarity=0.170 Sum_probs=28.4
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 26 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~ 59 (178)
T 4hku_A 26 EKTTLYDIASNLNVTHAALYKHYRNKEDLFQKLA 59 (178)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHH
T ss_pred ccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHHH
Confidence 3678999999999999999999988777665443
No 303
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=30.30 E-value=19 Score=29.24 Aligned_cols=35 Identities=9% Similarity=-0.031 Sum_probs=29.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|+|++|++++|..--..+......
T Consensus 27 ~~s~~~IA~~agvs~~tly~~F~sK~~L~~a~~~~ 61 (180)
T 2fd5_A 27 EPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQ 61 (180)
T ss_dssp SCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCccHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999999998877766554433
No 304
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.04 E-value=19 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=24.2
Q ss_pred cccccchhhhhcccccccchhhhhhhhH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+....+..++|..+|+|.+++++.|++.
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456788899999999999999999887
No 305
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.65 E-value=27 Score=26.19 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
...+..++|..+|+|.+++++.|++.+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456788999999999999999998863
No 306
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.50 E-value=20 Score=27.48 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=22.8
Q ss_pred ccc--hhhhhccc-ccccchhhhhhhhHHH
Q 015913 97 NLR--TRAVQELF-RYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~--~~~l~~~f-gis~stv~r~~~~v~~ 123 (398)
..+ +.+++..+ |+|++|+++.++...+
T Consensus 40 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 40 STRQNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp SSCBCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 345 89999999 9999999998876655
No 307
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=29.41 E-value=11 Score=34.11 Aligned_cols=45 Identities=4% Similarity=0.103 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhheecccc---ccchhhhhcccccccchhhhhhhhHHH
Q 015913 79 NRIKIEEQLAIFMFIVGH---NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 79 ~~~s~e~~l~~~L~~L~~---~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.-++.+-.|..|+. +.+..+|+...|+++||++|+++....
T Consensus 24 ~~v~sl~Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~ 71 (275)
T 3mq0_A 24 DTVPALRRAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE 71 (275)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356666777767776653 478999999999999999998876655
No 308
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=29.38 E-value=16 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=24.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+.++..+|...++|++||++.+++..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988877
No 309
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=29.27 E-value=15 Score=28.09 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|++|++++-+
T Consensus 33 ~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 33 TDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35689999999999999999999765
No 310
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.10 E-value=29 Score=28.39 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=23.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++.++|..+|+|.+||.+.+++..+
T Consensus 17 ~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 17 TLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 368999999999999999998776554
No 311
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=29.06 E-value=11 Score=29.61 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=22.7
Q ss_pred cccchhhhhcccccccchhhhhhhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
.|.++.++|...|+|++|++++-+-
T Consensus 4 ~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5889999999999999999998765
No 312
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=28.91 E-value=16 Score=27.78 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=22.4
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|++|++++-+
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4588999999999999999999875
No 313
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=28.89 E-value=17 Score=29.02 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=25.0
Q ss_pred cccchhhhhcccccccchhhhhhhhHHH
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.|.+..++|..||+|..+|.+++++.-.
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3889999999999999999999987654
No 314
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=28.86 E-value=33 Score=26.89 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=18.1
Q ss_pred chhhhhcccccccchhhhhhhhH
Q 015913 99 RTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v 121 (398)
+-+.++..||||++||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 57799999999999999866443
No 315
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=28.77 E-value=18 Score=28.51 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=19.3
Q ss_pred chhhhhcccccccchhhhhhhhH
Q 015913 99 RTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~v 121 (398)
+-+.++..||||++||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999866543
No 316
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=28.76 E-value=10 Score=33.36 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.7
Q ss_pred eccccccchhhhhcccccccchhhhhhh
Q 015913 92 FIVGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 92 ~~L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
++..+|.++.+||+.-|||+|+||++.+
T Consensus 39 ~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 39 YMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 4456799999999999999999999886
No 317
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=28.40 E-value=18 Score=27.30 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=22.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..++..|+...++++||++|.+.+...
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 368999999999999999997766554
No 318
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=28.25 E-value=16 Score=28.39 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=22.6
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|+|++|++++-+
T Consensus 22 ~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 22 KKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34689999999999999999998754
No 319
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.23 E-value=23 Score=26.66 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=23.9
Q ss_pred ccccchhhhhccc-ccccchhhhhhhhHHH
Q 015913 95 GHNLRTRAVQELF-RYSGETISRHFNNVLN 123 (398)
Q Consensus 95 ~~~~~~~~l~~~f-gis~stv~r~~~~v~~ 123 (398)
..+.++.+++..+ |+|++|+++.+++..+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3458999999999 5999999998776554
No 320
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=28.23 E-value=14 Score=28.51 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=22.7
Q ss_pred cccccchhhhhcccccccchhhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
...|.++.++|...|||+++++++-+
T Consensus 17 ~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 17 EERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 45689999999999999999998765
No 321
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=28.19 E-value=18 Score=29.93 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.+.++||..-|||++|++++|..--..+....
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~~~ 64 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPNKAAVVMDGF 64 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHCCCHHHHHHHHH
Confidence 3589999999999999999999988777775443
No 322
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=28.01 E-value=17 Score=35.49 Aligned_cols=44 Identities=5% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCHHHH-HHhheecc-ccccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIV-GHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L-~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++..+- ++..|+.- ..+.+..+|+.+.+++++|+++++++..+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5777664 55555432 14689999999999999999998776554
No 323
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=27.98 E-value=16 Score=27.95 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=27.8
Q ss_pred CHHHHHHhheec--cccccchhhhhcccccccchhhhhhh
Q 015913 82 KIEEQLAIFMFI--VGHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 82 s~e~~l~~~L~~--L~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
.....++-.|.. ...|.++.++|...|+|+++++++-+
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 334444444443 34689999999999999999998754
No 324
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=27.71 E-value=19 Score=28.56 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.2
Q ss_pred chhhhhcccccccchhhhhhhh
Q 015913 99 RTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 99 ~~~~l~~~fgis~stv~r~~~~ 120 (398)
+-+.+|..||||++||.+.+..
T Consensus 40 ser~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHH
Confidence 4578999999999999875543
No 325
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.70 E-value=32 Score=27.88 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=44.8
Q ss_pred CChhHHHhhcCCCHHHHHHHHHHHhcCCcccc-------CCCCCHHHHHHhheeccc--cccchhhhhccc---------
Q 015913 46 GQSERCLENFRMDKKVFYKLCDILQSKGLLRH-------TNRIKIEEQLAIFMFIVG--HNLRTRAVQELF--------- 107 (398)
Q Consensus 46 ~~d~~f~~~frms~~~F~~L~~~l~~~~~~~~-------~~~~s~e~~l~~~L~~L~--~~~~~~~l~~~f--------- 107 (398)
.+-.+.-+.|++++.++.+.+........... ...++.+..-.+ +.++. ...+...++..+
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I-~~~~~~~~~~s~~~i~~~l~~~~~~~~~ 120 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKI-GDYKRQNPTMFAWEIRDRLLAEGVCDND 120 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHH-HHHHHHCSSSCHHHHHHHHHHHTCSCTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHH-HHHHHHCccchHHHHHHHHHHhcccccC
Confidence 56677888999999999998877654322111 123444322222 12222 246777777766
Q ss_pred -ccccchhhhhhhh
Q 015913 108 -RYSGETISRHFNN 120 (398)
Q Consensus 108 -gis~stv~r~~~~ 120 (398)
.+|.+||++++++
T Consensus 121 ~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 121 TVPSVSSINRIIRT 134 (159)
T ss_dssp TSCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 4788888887654
No 326
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=27.49 E-value=15 Score=29.57 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=29.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--+.+..+...
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYSHYESKEVLLKELCED 66 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999999887777654433
No 327
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=27.42 E-value=21 Score=29.67 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=28.2
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
++.+.++|+..-|||++|++++|..--..+..+.
T Consensus 33 ~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~ 66 (203)
T 3ccy_A 33 SETSIGDIARACECSKSRLYHYFDSKEAVLRDML 66 (203)
T ss_dssp TTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHH
Confidence 3689999999999999999999987666665443
No 328
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.09 E-value=18 Score=29.72 Aligned_cols=35 Identities=6% Similarity=0.035 Sum_probs=29.0
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+.....
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~ 60 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVE 60 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 35899999999999999999999887776655443
No 329
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=26.93 E-value=25 Score=25.44 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHHHHHhheeccccccchhhhhcccccccc-hhhhhhhhHHH
Q 015913 83 IEEQLAIFMFIVGHNLRTRAVQELFRYSGE-TISRHFNNVLN 123 (398)
Q Consensus 83 ~e~~l~~~L~~L~~~~~~~~l~~~fgis~s-tv~r~~~~v~~ 123 (398)
..++++.+|..-+ +.+..+||..+||+.. +|.+.+....+
T Consensus 12 ~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 12 IKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3556665555554 6789999999999999 98887655433
No 330
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=26.93 E-value=17 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred ccccchhhhhcccccccchhhhhhh
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..|.++.++|...|+|+++||++.+
T Consensus 41 ~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 41 QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 3588999999999999999999854
No 331
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.77 E-value=19 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=29.4
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 56 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNI 56 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHH
Confidence 357899999999999999999998877766654433
No 332
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=26.61 E-value=22 Score=29.36 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 33 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 66 (195)
T 2iu5_A 33 QISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE 66 (195)
T ss_dssp GCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred eeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887777765443
No 333
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=26.39 E-value=19 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=30.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 63 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQ 63 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 688999999999999999999998877776554443
No 334
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=26.19 E-value=62 Score=28.09 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=17.5
Q ss_pred hhhhhcccccccchhhhhhhhH
Q 015913 100 TRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 100 ~~~l~~~fgis~stv~r~~~~v 121 (398)
-++++..||||+++|...+...
T Consensus 31 E~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 31 ERALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3589999999999998765543
No 335
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=26.18 E-value=23 Score=29.56 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=29.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~ 65 (212)
T 2ras_A 30 AGLTLSELAARAGISQANLSRYFETREDLMEAIADY 65 (212)
T ss_dssp SCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 368999999999999999999998877776655443
No 336
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=26.02 E-value=17 Score=29.51 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=29.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 64 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISW 64 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHH
Confidence 358899999999999999999998877766554433
No 337
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=25.89 E-value=18 Score=29.08 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 58 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMH 58 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998877776654433
No 338
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=25.87 E-value=18 Score=29.79 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLED 66 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999999877777654433
No 339
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=25.70 E-value=19 Score=29.20 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 578999999999999999999988777665443
No 340
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.62 E-value=33 Score=29.24 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=34.1
Q ss_pred CCCHHHHHHhheeccccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 80 RIKIEEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 80 ~~s~e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
.++..|.-.+ .+|+.|.+..+++...++|..||..++.+..+-|
T Consensus 159 ~Lt~rE~~vL--~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 159 KLTKREQQII--KLLGSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TSCHHHHHHH--HHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHH--HHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4777665443 3467899999999999999999998887765433
No 341
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=25.42 E-value=30 Score=29.85 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 84 EEQLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 84 e~~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
.+..+-+++.|....+-+++|...|+|++||+..+++.-+
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e 56 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSH 56 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555566666667788999999999999999987765544
No 342
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.37 E-value=18 Score=29.33 Aligned_cols=34 Identities=3% Similarity=0.175 Sum_probs=28.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (183)
T 1zk8_A 28 EVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGI 61 (183)
T ss_dssp GCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887776655443
No 343
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=25.10 E-value=19 Score=29.44 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=28.6
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 60 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESKEQLALAAFD 60 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHH
Confidence 35789999999999999999999877766654433
No 344
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=24.95 E-value=21 Score=29.45 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=28.6
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~ 69 (211)
T 3him_A 36 ATTTREIAASLDMSPGAVYPHYKTKESLLYAISL 69 (211)
T ss_dssp TCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHH
Confidence 5789999999999999999999887777665433
No 345
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=24.93 E-value=20 Score=29.19 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=28.7
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.|.++|+..-|||++|++++|..--+.+..+..
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~~ 55 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIE 55 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHHH
Confidence 35889999999999999999999887766654433
No 346
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=24.90 E-value=22 Score=31.34 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=27.9
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+...++...|+..++|+++||+.+++.-+.+.
T Consensus 13 ~~~gs~s~AA~~L~isq~avS~~i~~LE~~lg 44 (294)
T 1ixc_A 13 AEAGNMAAAAKRLHVSQPPITRQMQALEADLG 44 (294)
T ss_dssp HHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHhCCCcchHHHHHHHHHHHHC
Confidence 33458999999999999999999999988875
No 347
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=24.90 E-value=25 Score=30.42 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=28.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 66 ~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~ 99 (245)
T 3aqt_A 66 NVGIAEITEGANIGTGTFYNYFPDREQLLQAVAE 99 (245)
T ss_dssp GCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887777665443
No 348
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.88 E-value=35 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.5
Q ss_pred cccccchhhhhcccccccchhhhhhhhHH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
+....+..++|..+|+|.+++++.|++.+
T Consensus 24 ~~~~~sl~~lA~~~~~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 24 LESPLSLEKVSERSGYSKWHLQRMFKKET 52 (129)
T ss_dssp TTSCCCCHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34457888999999999999999998873
No 349
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=24.86 E-value=22 Score=29.75 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=29.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 71 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHE 71 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998877776654433
No 350
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.80 E-value=54 Score=29.10 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCCHHH-HHHhheeccc-cccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEE-QLAIFMFIVG-HNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~-~l~~~L~~L~-~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+ .++.+||.-+ .|.+..+|+...+++.+|+.+++++..+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 466665 4566666543 4689999999999999999987766554
No 351
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=24.46 E-value=27 Score=29.30 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=31.1
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcccc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 133 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~i 133 (398)
+.+.++|+..-|||++|++++|..--..+..+...++
T Consensus 48 ~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~ 84 (215)
T 2qko_A 48 GLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIH 84 (215)
T ss_dssp TCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGG
T ss_pred hccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998777776555443
No 352
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=24.43 E-value=20 Score=29.28 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 64 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYAR 64 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHH
Confidence 58899999999999999999999877776654443
No 353
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=24.29 E-value=20 Score=29.50 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=29.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 63 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGR 63 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHHHHHHHHHHH
Confidence 57999999999999999999998877777654433
No 354
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.18 E-value=19 Score=29.51 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=23.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 32 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (199)
T 3on2_A 32 GLSLRQLAREAGVSHAAPSKHFRDRQALLDALAES 66 (199)
T ss_dssp GCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHH
Confidence 47899999999999999999998877776654433
No 355
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=24.16 E-value=24 Score=29.35 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=28.4
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+.....
T Consensus 33 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 66 (217)
T 3nrg_A 33 SVSINRITERAGIAKGSFYQYFADKKDCYLYLIQ 66 (217)
T ss_dssp GCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887766654433
No 356
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=24.05 E-value=29 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
..+..++|..+|+|.+++++.|++.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~ 44 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56788999999999999999998873
No 357
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.02 E-value=20 Score=29.15 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=29.6
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQ 62 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHH
Confidence 357899999999999999999999877776654433
No 358
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=24.01 E-value=26 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 31 ~~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~~~~~~ 67 (220)
T 3lsj_A 31 GSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEV 67 (220)
T ss_dssp GGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999998777766544433
No 359
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.95 E-value=21 Score=29.69 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=29.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 68 (220)
T 3lhq_A 34 ATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWEL 68 (220)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHH
Confidence 57899999999999999999999877776654443
No 360
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=23.72 E-value=21 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=28.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 29 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (195)
T 3ppb_A 29 GTSTATIAREAGVATGTLFHHFPSKEQLLEQLFL 62 (195)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999987777654433
No 361
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=23.69 E-value=25 Score=28.82 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHhheeccccc---cchhhhhcccc-cccchhhhhhhhHHH
Q 015913 85 EQLAIFMFIVGHN---LRTRAVQELFR-YSGETISRHFNNVLN 123 (398)
Q Consensus 85 ~~l~~~L~~L~~~---~~~~~l~~~fg-is~stv~r~~~~v~~ 123 (398)
.++.+.-..+++. .+..+|...++ +|++||++.++...+
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~e 72 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVD 72 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3444444444432 35566777788 999999998876555
No 362
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=23.68 E-value=17 Score=33.04 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHhheeccccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 87 LAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 87 l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+-.|+....+|.++...|+..++|+++||+.+++.-+.+.
T Consensus 6 L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg 45 (324)
T 1al3_A 6 LRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELG 45 (324)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 3344444445559999999999999999999999988875
No 363
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=23.63 E-value=27 Score=27.44 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHhheecc--ccccchhhhhcccccccchhhhhhhhHH
Q 015913 85 EQLAIFMFIV--GHNLRTRAVQELFRYSGETISRHFNNVL 122 (398)
Q Consensus 85 ~~l~~~L~~L--~~~~~~~~l~~~fgis~stv~r~~~~v~ 122 (398)
..+.-++.+| ..+.+..++|..+|+|.+++++.|++.+
T Consensus 79 ~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~ 118 (133)
T 1u8b_A 79 DKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3444444445 4678899999999999999999998764
No 364
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=23.57 E-value=26 Score=28.43 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=26.7
Q ss_pred ccchhhhhcccccccchhhhhhhh-HHHHHHHh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNN-VLNAIMAI 128 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~-v~~~l~~~ 128 (398)
+.+.++|+..-|||++|++++|.. --..+..+
T Consensus 26 ~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~ 58 (191)
T 1sgm_A 26 ATGLNQIVKESGAPKGSLYHFFPNGKEELAIEA 58 (191)
T ss_dssp TCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHH
T ss_pred ccCHHHHHHHHCCCchhHHHHccccHHHHHHHH
Confidence 578999999999999999999996 65555443
No 365
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=23.55 E-value=22 Score=29.31 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=27.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (203)
T 3b81_A 31 NTTLAFIINKLGISKGALYHYFSSKEECADAAI 63 (203)
T ss_dssp TCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 578999999999999999999988766665443
No 366
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.51 E-value=23 Score=29.56 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=28.6
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~~ 61 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGELFASVLE 61 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 6899999999999999999999887776654433
No 367
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.12 E-value=22 Score=29.79 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=30.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
.+.+.++|+..-|||++|++++|..--..+..+...+
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~~~~ 66 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRA 66 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999988777666554433
No 368
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=23.06 E-value=22 Score=29.47 Aligned_cols=35 Identities=3% Similarity=-0.109 Sum_probs=28.8
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLK 67 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 35889999999999999999999887776654433
No 369
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=23.03 E-value=18 Score=33.96 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHhheeccccccchhhhhcccccccchhhhhhhhHHH
Q 015913 86 QLAIFMFIVGHNLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 86 ~l~~~L~~L~~~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
+++..|++ ..+.+..+++..+|+|++||+|.+.+..+
T Consensus 24 ~iL~~l~~-~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 24 QILRNIYW-MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444544 35799999999999999999998887655
No 370
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=22.96 E-value=23 Score=29.53 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=28.0
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 33 ~~~s~~~IA~~agvsk~tlY~yF~sKe~L~~a~~ 66 (199)
T 3crj_A 33 ADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFL 66 (199)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHhhhcCCHHHHHHHHH
Confidence 4689999999999999999999987666665433
No 371
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.93 E-value=23 Score=29.15 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=28.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 37 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (206)
T 3kz9_A 37 RGGHADIAEIAQVSVATVFNYFPTREDLVDEVLN 70 (206)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred cccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887776654443
No 372
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.86 E-value=23 Score=29.20 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=31.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcccc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 133 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~i 133 (398)
.+.+.++|+..-|||++|++++|..--..+..+....+
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~ 73 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVESWI 73 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999999999999987777765554443
No 373
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.83 E-value=23 Score=29.04 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=28.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQ 67 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHH
Confidence 5789999999999999999999887777665443
No 374
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=22.80 E-value=22 Score=29.79 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=28.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999999988777665443
No 375
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=22.62 E-value=25 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred ccchhhhhcccccccchhhhhhhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..+..++|...|+|.+||.|..+.
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHH
Confidence 578899999999999999986543
No 376
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.59 E-value=23 Score=28.90 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=27.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 30 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 62 (197)
T 3rd3_A 30 GVGLNEILQSAGVPKGSFYHYFKSKEQFGQALL 62 (197)
T ss_dssp TCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHH
Confidence 578999999999999999999988777665443
No 377
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=22.52 E-value=23 Score=29.21 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=27.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--+.+..+.
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~ 64 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVL 64 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999999988777665443
No 378
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=22.49 E-value=22 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~~ 65 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQDLNALTLEVNG 65 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHHH
Confidence 36799999999999999999999987777665443
No 379
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=22.48 E-value=24 Score=28.72 Aligned_cols=37 Identities=11% Similarity=0.019 Sum_probs=31.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcccc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 133 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~i 133 (398)
+.+.++|+..-|||++|++++|..--..+..+...+.
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~ 63 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYG 63 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHHHH
Confidence 4789999999999999999999988887776555443
No 380
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=22.47 E-value=25 Score=29.20 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 71 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLR 71 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHH
T ss_pred chhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHH
Confidence 35789999999999999999999887776655443
No 381
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.31 E-value=25 Score=29.49 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
.+.+.++|+..-|||++|++++|..--..+..+....
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~~ 70 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQ 70 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998777776554443
No 382
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=22.26 E-value=24 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred ccchhhhhcccccccchhhhhhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFN 119 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~ 119 (398)
..+..++|..+|||++++.+.++
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHH
Confidence 35678999999999999998654
No 383
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=22.25 E-value=23 Score=29.36 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=28.4
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 78 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIE 78 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHH
Confidence 35899999999999999999999987777665443
No 384
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=22.16 E-value=80 Score=24.53 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.5
Q ss_pred cccccceeee------cceEEEEEeCCCCC
Q 015913 152 PYFKDCVGAV------DGIHIPVMVGVDEQ 175 (398)
Q Consensus 152 ~~fp~~iG~I------Dgt~i~i~~P~~~~ 175 (398)
|+||+.=.+| ||.|+.|+.|....
T Consensus 5 pgfPgAPs~ikIsK~~dgahLsWePP~~~s 34 (123)
T 1wft_A 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPS 34 (123)
T ss_dssp SSCCCCCEEEEEEECSSEEEEEEECCSSCC
T ss_pred CCCCCCCcceEEeeCCCceEEeecCCCCCC
Confidence 5666654444 99999999998753
No 385
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=22.14 E-value=24 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|+|++|++++|..--..+....
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 578999999999999999999988766665443
No 386
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.10 E-value=24 Score=28.87 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=28.9
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+.....
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~ 61 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIR 61 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHH
Confidence 36799999999999999999999887776654433
No 387
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.04 E-value=24 Score=29.40 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=28.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
++.+.++|+..-|||++|++++|..--+.+.....
T Consensus 31 ~~ts~~~IA~~agvs~gtlY~yF~sKe~L~~~v~~ 65 (205)
T 1rkt_A 31 ELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIE 65 (205)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCcchhhhhCCCHHHHHHHHHH
Confidence 36899999999999999999999876666654433
No 388
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=22.03 E-value=24 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.+.++|+..-|||++|++.+|..--+.+..+.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~~ 62 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALF 62 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHHH
Confidence 4689999999999999999999988766665443
No 389
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=22.02 E-value=26 Score=29.25 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=29.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~~~ 65 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDS 65 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHHHH
Confidence 368899999999999999999998877766654443
No 390
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.00 E-value=30 Score=28.83 Aligned_cols=37 Identities=3% Similarity=0.022 Sum_probs=30.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
.+.|.++|+..-|||++|++++|..--..+......+
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~~~~ 66 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRY 66 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHH
Confidence 4689999999999999999999988777766554443
No 391
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=21.94 E-value=29 Score=28.81 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=29.5
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 64 (216)
T 3s5r_A 29 AATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEE 64 (216)
T ss_dssp TTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 357899999999999999999998877776654433
No 392
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.78 E-value=26 Score=25.78 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=21.6
Q ss_pred cccccchhhhhcccccccch----hhhhhh
Q 015913 94 VGHNLRTRAVQELFRYSGET----ISRHFN 119 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~st----v~r~~~ 119 (398)
...|.++.++|...|+|++| ++++-+
T Consensus 11 ~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 11 LRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 34688999999999999999 777544
No 393
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=21.63 E-value=26 Score=29.19 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=28.2
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~ 66 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKESMVDEIL 66 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHH
Confidence 3578999999999999999999987666665443
No 394
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=21.58 E-value=20 Score=29.25 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.3
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--+.+......
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKENLFLALARE 68 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHHH
Confidence 47899999999999999999999877777654433
No 395
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=21.39 E-value=25 Score=29.02 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=27.3
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAI 128 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~ 128 (398)
++.|.++|+..-|||++|++.+|..--..+..+
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~ 61 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGKDEILRTS 61 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCHHHHHHHH
Confidence 468999999999999999999998765555443
No 396
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=21.38 E-value=29 Score=28.69 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=28.6
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.|.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~ 65 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVE 65 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 36899999999999999999999876666654433
No 397
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.38 E-value=27 Score=28.88 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=28.7
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 69 (213)
T 2qtq_A 36 DISLSELSLRSGLNSALVKYYFGNKAGLLKALLD 69 (213)
T ss_dssp CCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHH
T ss_pred cccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHH
Confidence 5899999999999999999999887776655443
No 398
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=21.37 E-value=45 Score=29.64 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCHHHH-HHhheecccc-ccchhhhhcccccccchhhhhhhhHHH
Q 015913 80 RIKIEEQ-LAIFMFIVGH-NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 80 ~~s~e~~-l~~~L~~L~~-~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
++++.+- ++.+|+.-.. +.+..+|+...+++++|+++++++...
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~ 200 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK 200 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 5666554 4555544432 479999999999999999998876655
No 399
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=21.32 E-value=43 Score=25.61 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.5
Q ss_pred cccccchhhhhcccccccchhhhhhhhH
Q 015913 94 VGHNLRTRAVQELFRYSGETISRHFNNV 121 (398)
Q Consensus 94 L~~~~~~~~l~~~fgis~stv~r~~~~v 121 (398)
+....+..++|..+|+|.+++++.|++.
T Consensus 20 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 20 IAHEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp TTSCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 3456778899999999999999998764
No 400
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=21.18 E-value=26 Score=31.02 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=26.3
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHHHHH
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLNAIM 126 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~ 126 (398)
+...++...|+..++|+++||+.+++.-+.+.
T Consensus 16 ~~~~s~s~AA~~L~isq~avS~~i~~LE~~lg 47 (306)
T 3fzv_A 16 VECGSVAEASRKLYIAQPSISTAVKGLEESFG 47 (306)
T ss_dssp HHSSSHHHHHHHHTCCC-CHHHHHHHHHHHC-
T ss_pred HHhCCHHHHHHHhCCCchHHHHHHHHHHHHhC
Confidence 34458999999999999999999999888875
No 401
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.12 E-value=26 Score=29.37 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=28.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 50 ~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~~ 84 (222)
T 3bru_A 50 SVGVDEILKAARVPKGSFYHYFRNKADFGLALIEA 84 (222)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHHH
Confidence 57899999999999999999998877766544433
No 402
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=21.09 E-value=49 Score=28.09 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=25.4
Q ss_pred eeeecceEEEEEeCCCCCCCCCCCCCccccceeeeecC
Q 015913 158 VGAVDGIHIPVMVGVDEQGPFRNKSGLLSQNVLAACSF 195 (398)
Q Consensus 158 iG~IDgt~i~i~~P~~~~~~y~~~k~~~s~~~q~v~d~ 195 (398)
.||+|....|+. .||+.++..+.++|++
T Consensus 38 aGAlDV~~tPi~----------MKKnRPg~~L~VLc~~ 65 (186)
T 3c19_A 38 EEVLACHAVPCV----------TKKNRPGHVLVVLVDG 65 (186)
T ss_dssp TTEEEEEEEEEE----------ETTTEEEEEEEEEEEC
T ss_pred CCCeEEEeeece----------EeCCCceEEEEEEECC
Confidence 489999999996 5899999999999997
No 403
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.07 E-value=31 Score=29.31 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=30.8
Q ss_pred ccccchhhhhcccccccchhhhhhhhHHHHHHHhhccc
Q 015913 95 GHNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDF 132 (398)
Q Consensus 95 ~~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~ 132 (398)
+ +.|.++|+...|||++|++++|..--..+..+...+
T Consensus 28 G-~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~~~ 64 (213)
T 2g7g_A 28 G-DFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRHRV 64 (213)
T ss_dssp S-SCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHHHHHH
Confidence 5 899999999999999999999988777766554443
No 404
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.06 E-value=21 Score=29.16 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=28.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 23 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 56 (189)
T 3geu_A 23 GTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVK 56 (189)
T ss_dssp HCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHhCCHHHHHHHHHH
Confidence 4789999999999999999999887777665443
No 405
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=21.04 E-value=25 Score=29.06 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=28.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 28 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 62 (199)
T 2o7t_A 28 SLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQY 62 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998877766554433
No 406
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.99 E-value=26 Score=29.15 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=28.6
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 5789999999999999999999887776655443
No 407
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=20.92 E-value=21 Score=29.42 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (204)
T 3eup_A 31 GTSLTDLTEATNLTKGSIYGNFENKEAVAIAAF 63 (204)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHH
Confidence 578999999999999999999987777665443
No 408
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=20.90 E-value=22 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.9
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--..+..+.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~ 66 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 478999999999999999999988777665543
No 409
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=20.85 E-value=25 Score=29.28 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=28.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 39 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 72 (216)
T 3qqa_A 39 ETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILD 72 (216)
T ss_dssp TCCHHHHHHHHTTSCCSSSCSCCSHHHHHHHHHH
T ss_pred hCCHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHH
Confidence 5789999999999999999999877766654433
No 410
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=20.75 E-value=25 Score=29.30 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=28.6
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--..+..+..
T Consensus 23 ~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~ 56 (212)
T 3rh2_A 23 TITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFD 56 (212)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999999999999999887777654443
No 411
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=20.72 E-value=27 Score=28.51 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=29.1
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
.+.+.++|+..-|||++|++++|..--..+.....
T Consensus 30 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (196)
T 3he0_A 30 QGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRL 64 (196)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHH
Confidence 35889999999999999999999887777765443
No 412
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=20.70 E-value=25 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=29.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 69 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQE 69 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999998877776654433
No 413
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=20.65 E-value=27 Score=29.05 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=29.0
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 85 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNS 85 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999999877776654433
No 414
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.52 E-value=25 Score=29.19 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=27.7
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
+.+.++|+..-|||++|++++|..--+.+..+.
T Consensus 29 ~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~ 61 (204)
T 3anp_C 29 ETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYG 61 (204)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHH
T ss_pred cccHHHHHHHcCCchHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999999987666665443
No 415
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=20.47 E-value=27 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=29.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 42 ~~s~~~IA~~AGVsk~tlY~~F~sKe~L~~a~~~~ 76 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVD 76 (207)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 57899999999999999999999877776654433
No 416
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=20.46 E-value=30 Score=26.40 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.4
Q ss_pred ccchhhhhcccccccchhhhhhhh
Q 015913 97 NLRTRAVQELFRYSGETISRHFNN 120 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~ 120 (398)
..+..++|...|+|.+||.|..+.
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478899999999999999985543
No 417
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=20.42 E-value=1e+02 Score=25.89 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHhhcCCCHHHHHHHHHHHhcCCccccCCCCCHHHHHHhheec----cccccchhhhhcccccccchhhhhhhhHHHHH
Q 015913 50 RCLENFRMDKKVFYKLCDILQSKGLLRHTNRIKIEEQLAIFMFI----VGHNLRTRAVQELFRYSGETISRHFNNVLNAI 125 (398)
Q Consensus 50 ~f~~~frms~~~F~~L~~~l~~~~~~~~~~~~s~e~~l~~~L~~----L~~~~~~~~l~~~fgis~stv~r~~~~v~~~l 125 (398)
++-..++++..+-..=...++........++.+++.-.+.+||. -+.+.+.++++..++++..++.++++.+++.|
T Consensus 18 ~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L 97 (200)
T 1ais_B 18 RITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNL 97 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44456677766555544444322111223455666555555553 45778999999999999999888887766654
No 418
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=20.42 E-value=27 Score=28.86 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.4
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhhcc
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAISLD 131 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~ 131 (398)
.+.+.++|+..-|||++|++++|..--..+..+...
T Consensus 31 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 66 (196)
T 2qwt_A 31 LGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAED 66 (196)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 368999999999999999999998877766554433
No 419
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.34 E-value=36 Score=26.54 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=22.2
Q ss_pred ccchhhhhcccccccchhhhhhhhHHH
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLN 123 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~ 123 (398)
..+..++++.+|+|++++.+++....+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367889999999999999987765544
No 420
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.25 E-value=27 Score=29.27 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=28.5
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISL 130 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~ 130 (398)
+.+.++|+..-|||++|++++|..--+.+..+..
T Consensus 28 ~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~ 61 (206)
T 1vi0_A 28 QSQVSKIAKQAGVADGTIYLYFKNKEDILISLFK 61 (206)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 5799999999999999999999887776654443
No 421
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=20.18 E-value=29 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.2
Q ss_pred cccchhhhhcccccccchhhhhhhhHHHHHHHhh
Q 015913 96 HNLRTRAVQELFRYSGETISRHFNNVLNAIMAIS 129 (398)
Q Consensus 96 ~~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~ 129 (398)
.+.|.++|+..-|||++|++++|..--..+..+.
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~ 64 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKETLFGEVV 64 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3589999999999999999999987666665443
No 422
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=20.16 E-value=33 Score=29.00 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=30.8
Q ss_pred ccchhhhhcccccccchhhhhhhhHHHHHHHhhcccc
Q 015913 97 NLRTRAVQELFRYSGETISRHFNNVLNAIMAISLDFF 133 (398)
Q Consensus 97 ~~~~~~l~~~fgis~stv~r~~~~v~~~l~~~~~~~i 133 (398)
+.+.++|+..-|||++|++++|..--..+..+....+
T Consensus 59 ~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~~~~~ 95 (214)
T 2guh_A 59 EITLKDIAEDAGVSAPLIIKYFGSKEQLFDALVDFRA 95 (214)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHTCCHH
T ss_pred hcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4789999999999999999999988777776554443
Done!