Query 015914
Match_columns 398
No_of_seqs 170 out of 375
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2.4E-53 5.2E-58 414.6 -3.7 285 1-304 20-345 (351)
2 PF05830 NodZ: Nodulation prot 94.6 0.12 2.7E-06 52.3 7.9 158 89-293 122-290 (321)
3 KOG3849 GDP-fucose protein O-f 90.2 0.65 1.4E-05 46.9 6.1 150 121-302 209-368 (386)
4 KOG3705 Glycoprotein 6-alpha-L 79.7 6.1 0.00013 42.0 7.3 129 121-289 340-475 (580)
5 PLN02232 ubiquinone biosynthes 62.6 16 0.00035 32.7 5.2 100 116-229 48-153 (160)
6 PRK15451 tRNA cmo(5)U34 methyl 53.6 22 0.00049 33.9 4.9 87 120-223 133-230 (247)
7 PF14771 DUF4476: Domain of un 53.5 20 0.00043 29.5 3.9 36 201-251 39-74 (95)
8 PF00799 Gemini_AL1: Geminivir 45.0 25 0.00054 30.9 3.4 29 199-228 14-42 (114)
9 PF10892 DUF2688: Protein of u 38.1 24 0.00051 27.8 1.9 16 198-214 42-57 (60)
10 PF00036 EF-hand_1: EF hand; 38.1 28 0.00061 23.1 2.1 26 313-338 4-29 (29)
11 smart00874 B5 tRNA synthetase 35.1 39 0.00085 26.0 2.8 24 194-218 12-35 (71)
12 PF00667 FAD_binding_1: FAD bi 29.2 1.2E+02 0.0025 28.6 5.4 115 200-337 52-176 (219)
13 PF06180 CbiK: Cobalt chelatas 29.1 1.8E+02 0.0039 29.0 6.9 131 175-310 25-205 (262)
14 PF13833 EF-hand_8: EF-hand do 27.7 66 0.0014 23.1 2.8 29 309-337 22-53 (54)
15 PF03484 B5: tRNA synthetase B 25.2 48 0.001 25.9 1.8 24 194-218 12-35 (70)
16 PRK10556 hypothetical protein; 23.4 51 0.0011 28.7 1.7 19 202-220 3-21 (111)
17 COG0859 RfaF ADP-heptose:LPS h 22.6 1.3E+02 0.0027 30.2 4.5 72 206-297 199-270 (334)
18 PF08924 DUF1906: Domain of un 21.8 99 0.0021 27.5 3.3 22 206-227 81-102 (136)
19 PLN02233 ubiquinone biosynthes 21.5 2.4E+02 0.0053 27.3 6.2 37 115-151 148-184 (261)
20 COG0763 LpxB Lipid A disacchar 21.1 1.5E+02 0.0032 31.4 4.8 100 220-319 2-138 (381)
21 PF09400 DUF2002: Protein of u 20.7 49 0.0011 29.1 1.0 19 202-220 3-21 (111)
22 PF13756 Stimulus_sens_1: Stim 20.6 1.2E+02 0.0025 26.2 3.3 34 202-235 1-36 (112)
23 cd06418 GH25_BacA-like BacA is 20.1 1.1E+02 0.0025 29.2 3.5 24 206-229 93-116 (212)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2.4e-53 Score=414.57 Aligned_cols=285 Identities=37% Similarity=0.664 Sum_probs=197.6
Q ss_pred CEEeeecccceEeccccCCCCcCCCCCC-----CCcccchHHHHHhccCceEEeccCChhhhhhcCC-------------
Q 015914 1 MVTVAQLLNLTLVVPELDKTSFWADPSN-----FEDIFNVRHFIDSLRDEVRIVRRLPKKYSRKYGY------------- 62 (398)
Q Consensus 1 ~V~vARiLNATLVlP~l~~~s~w~D~S~-----F~dIfD~dhFI~~L~~dVrIVk~LP~~~~~~~~~------------- 62 (398)
||++|++||+|||||.+.....|++.++ |+++||+++|++.++++|.+.+.+|..+......
T Consensus 20 a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~~~~~~~~ 99 (351)
T PF10250_consen 20 AVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSPWESGSWD 99 (351)
T ss_dssp HHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-B------
T ss_pred HHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccccccccch
Confidence 4789999999999999999999999988 9999999999999999999999998766542110
Q ss_pred ---------------CCcccCCCC-CCChHHHHhhcccccccC------ceEEEeccCcccccCCCCchhhhhhhhhccc
Q 015914 63 ---------------SPMEMPPVS-WSNEKYYLQQILPHFSKH------KVLHFNRTDTRLANNGIPFDLQKLRCRVNFQ 120 (398)
Q Consensus 63 ---------------~~~~~~~~~-~s~~~yY~~~vlP~l~k~------~Vi~l~~~~~rLa~~~lp~~iQrLRCrvnf~ 120 (398)
..++..+.. |+.+.+|+++++|.+.++ +|+.|.++..++..+..+.++||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r-------- 171 (351)
T PF10250_consen 100 DNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR-------- 171 (351)
T ss_dssp --TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------
T ss_pred hhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------
Confidence 112223223 788899999999999886 99999999999999888999987
Q ss_pred ccccchhHHHHHHHHHHHHh-hcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHhcCCC
Q 015914 121 GLKFTPKIETLGYELVRILQ-EKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRSQGL 199 (398)
Q Consensus 121 ALrF~p~I~~lg~~lv~Rlr-~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~ 199 (398)
+|+|+++|+++|+++++++. .++||||+|||+|+|| +++|.+++ +...|+.+|. |..+.+++...|..|.
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~ 242 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WGKKSINPEKKRRNGC 242 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-GGGTT-----HHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hccccccchhhhhcCC
Confidence 99999999999999999999 7889999999999999 89999954 6677877775 3566778888999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccCC
Q 015914 200 CPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTAS 279 (398)
Q Consensus 200 CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~S 279 (398)
||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+++.+.+|+++|.. +++|+||++||++|
T Consensus 243 ~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s 320 (351)
T PF10250_consen 243 CPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRS 320 (351)
T ss_dssp S--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999876 99999999999999
Q ss_pred ceeeecCCCchhhhhhhhhhhcCCC
Q 015914 280 DIFIPTYDGNMAKVVEGHRRYLGFK 304 (398)
Q Consensus 280 DvFv~t~~Gnfa~~v~GhR~y~G~~ 304 (398)
|+||+|..++|+.+|+++|.|.|..
T Consensus 321 ~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 321 DVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp SEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred CEEEecCcchhHHHhhcccCcCCCC
Confidence 9999999888999999999999964
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=94.62 E-value=0.12 Score=52.29 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=82.5
Q ss_pred CceEEEeccCcccccCCCCchhhhhhhhhcccccccchhHHHHHHHHHHHHhhcCCeeEEeccch--hhHHHhhcCCCCC
Q 015914 89 HKVLHFNRTDTRLANNGIPFDLQKLRCRVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYE--MDMLAFSGCTHGC 166 (398)
Q Consensus 89 ~~Vi~l~~~~~rLa~~~lp~~iQrLRCrvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E--~Dmla~sgC~~g~ 166 (398)
.-||+..=..-++.. + ..| .-|..|+-+++|++..+.+-+.-=.+.+=|++|-|.= +|.+.+ +|
T Consensus 122 ~~vv~d~c~~~~c~~-----~--aeR--~if~slkpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h-~~---- 187 (321)
T PF05830_consen 122 NTVVCDACLMWRCDE-----E--AER--EIFSSLKPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDH-AP---- 187 (321)
T ss_dssp SEEEE-S--TTSS-H-----H--HHH--HHHHHS-B-HHHHHHHHHHHHHHTTTSEEEEEEE------------------
T ss_pred chhhhHhhcCCcchh-----H--HHH--HHHHhCCCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhcc-Cc----
Confidence 567776655555422 2 333 3799999999999999998877665567899999941 122222 12
Q ss_pred ChhhHHHHHHHHhhCccccccccChHHHhcCCCCCCCHHHH---HHHHHHcCCCCCceEEEEeccccCCccchHHHHHhC
Q 015914 167 SMGEAEELKRLRYAYPWWREKEIVSEERRSQGLCPLTPEEA---ALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAF 243 (398)
Q Consensus 167 ~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPLtPeEv---gl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~f 243 (398)
.|.... .+=..| ...++++-.+.++.|+||+-. .+.++-+++.|
T Consensus 188 ----------------~~~D~e-------------~~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~F 234 (321)
T PF05830_consen 188 ----------------YWADEE-------------RALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKKF 234 (321)
T ss_dssp ------------------HHHH-------------HHHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHHS
T ss_pred ----------------cccCch-------------HHHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHHC
Confidence 232210 000111 122345556678999999988 57789999999
Q ss_pred CcccccccCCChHhhhhhhc-----cccchhhhhheeccCCceee-ecCCCchhhh
Q 015914 244 PRIVRKEMLLDPAELQLFQN-----HSSQMAALDFMVSTASDIFI-PTYDGNMAKV 293 (398)
Q Consensus 244 Pnl~tKe~L~~~eeL~pf~~-----~~s~~AAlDyiVcl~SDvFv-~t~~Gnfa~~ 293 (398)
|.+++-++=..+..-.++.+ .+-..|-+|-+...++|+-| .+-.+.|++.
T Consensus 235 Pdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 235 PDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp TTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHH
T ss_pred CCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhH
Confidence 99887654333222112211 11247889999999999999 5555556543
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.65 Score=46.87 Aligned_cols=150 Identities=17% Similarity=0.304 Sum_probs=86.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHhc----
Q 015914 121 GLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRS---- 196 (398)
Q Consensus 121 ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~---- 196 (398)
-|+.+++|.+.|++.+..=-. .||+++|||.-.||+-- |.+.-.... | +-+...- --...+.
T Consensus 209 Yl~WS~r~~e~~k~fI~a~L~-rpfvgiHLRng~DWvra--Cehikd~~~-------~---hlfASpQ-ClGy~~~~gaL 274 (386)
T KOG3849|consen 209 YLRWSSRITEQAKKFISANLA-RPFVGIHLRNGADWVRA--CEHIKDTTN-------R---HLFASPQ-CLGYGHHLGAL 274 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cceeEEEeecCchHHHH--HHHhcccCC-------C---ccccChh-hcccccccccc
Confidence 488899999999887654222 49999999999999875 754211100 0 0010000 0000111
Q ss_pred -CCCCCCCHHHHH----HHHHHcCCCCCceEEEEeccccCCccchHHHH-HhCCcccccccCCChHhhhhhhccccchhh
Q 015914 197 -QGLCPLTPEEAA----LVLQALGIDKDTHIYIAAGEIYGGEKRLAALR-AAFPRIVRKEMLLDPAELQLFQNHSSQMAA 270 (398)
Q Consensus 197 -~G~CPLtPeEvg----l~LralGf~~~T~IYlA~g~iygg~~~l~~L~-~~fPnl~tKe~L~~~eeL~pf~~~~s~~AA 270 (398)
...|-=.-++|- +-.+.+| .--.+|+|+-. +.-+.-|. +++|-=+.-..| + -.-+-
T Consensus 275 t~e~C~Psk~~I~rqik~~v~si~--dakSVfVAsDs----~hmi~Eln~aL~~~~i~vh~l------~------pdd~y 336 (386)
T KOG3849|consen 275 TKEICSPSKQQILRQIKEKVGSIG--DAKSVFVASDS----DHMIDELNEALKPYEIEVHRL------E------PDDMY 336 (386)
T ss_pred chhhhCccHHHHHHHHHHHHhhhc--ccceEEEeccc----hhhhHHHHHhhcccceeEEec------C------cccch
Confidence 123433333332 2223344 23379999866 22233343 344421111111 1 12346
Q ss_pred hhheeccCCceeeecCCCchhhhhhhhhhhcC
Q 015914 271 LDFMVSTASDIFIPTYDGNMAKVVEGHRRYLG 302 (398)
Q Consensus 271 lDyiVcl~SDvFv~t~~Gnfa~~v~GhR~y~G 302 (398)
+|..|.-+||-||++--++|+..|.-.|-..|
T Consensus 337 ~dLaIlGqadhFiGNCvSsfsafvKRERD~~G 368 (386)
T KOG3849|consen 337 TDLAILGQADHFIGNCVSSFSAFVKRERDHAG 368 (386)
T ss_pred hhhhhhcccchhhhhhHHHHHHHHhhhhcccC
Confidence 89999999999999999999999999998888
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.66 E-value=6.1 Score=41.96 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=78.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHhcCCCC
Q 015914 121 GLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRSQGLC 200 (398)
Q Consensus 121 ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~C 200 (398)
-+||+|..++.-++-...|.-+.|-|++|.|-.. .-|+++---.++.|=..+..|
T Consensus 340 L~Rpqp~t~~~l~~a~k~lg~~~PivGvhvRRTD---------KVGTEAAfH~~eEYM~~vE~~---------------- 394 (580)
T KOG3705|consen 340 LMRPQPATQEKLDKALKSLGLDKPIVGVHVRRTD---------KVGTEAAFHALEEYMEWVEIW---------------- 394 (580)
T ss_pred HhCCChhhHHHHHHHHHhCCCCCceeeEEEEecc---------cccchhhhhhHHHHHHHHHHH----------------
Confidence 4788888887655555555445699999999742 223333333444443211111
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcccccccCCChHhhhhhhcc-------ccchhhhhh
Q 015914 201 PLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNH-------SSQMAALDF 273 (398)
Q Consensus 201 PLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~-------~s~~AAlDy 273 (398)
-.+|..=|=+-.-+||||+-+. ..+.--+.-|||.. +....|.+--..- +...--+|.
T Consensus 395 -------f~~le~rg~~~~rRiflAsDDp----~vv~EAk~kYPnYe----~igd~eia~~A~l~nRYTd~sL~GvIlDI 459 (580)
T KOG3705|consen 395 -------FKVLEKRGKPLERRIFLASDDP----TVVPEAKNKYPNYE----VIGDTEIAKTAQLNNRYTDASLMGVILDI 459 (580)
T ss_pred -------HHHHHHhCCchhheEEEecCCc----hhchHhhccCCCcE----EeccHHHHHHhhccccchhhhhhheeeee
Confidence 1222222334556899999984 45666788999975 4455555322221 223456799
Q ss_pred eeccCCceeeecCCCc
Q 015914 274 MVSTASDIFIPTYDGN 289 (398)
Q Consensus 274 iVcl~SDvFv~t~~Gn 289 (398)
.+.+.+|..|.|+++-
T Consensus 460 h~LS~~d~LVCTFSSQ 475 (580)
T KOG3705|consen 460 HILSKVDYLVCTFSSQ 475 (580)
T ss_pred eeecccceEEEechHH
Confidence 9999999999988764
No 5
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=62.56 E-value=16 Score=32.66 Aligned_cols=100 Identities=17% Similarity=0.063 Sum_probs=59.9
Q ss_pred hhcccccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHh----hcCCCCCChhhH--HHHHHHHhhCcccccccc
Q 015914 116 RVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAF----SGCTHGCSMGEA--EELKRLRYAYPWWREKEI 189 (398)
Q Consensus 116 rvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~----sgC~~g~~~~e~--~eL~~~R~~~~~w~~k~i 189 (398)
-++..+|++.++..+.-+.+.+.|+.+|.++-++...+...+.. .-|....-+-+. ....+|++-
T Consensus 48 v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl--------- 118 (160)
T PLN02232 48 VTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYL--------- 118 (160)
T ss_pred EEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhH---------
Confidence 34456778778888888999999999999988877654322110 111110000000 000111110
Q ss_pred ChHHHhcCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccc
Q 015914 190 VSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEI 229 (398)
Q Consensus 190 ~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~g~i 229 (398)
...... +++|+|+..+|+..||.+-+.-+++.|-.
T Consensus 119 ----~~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 119 ----KYSING-YLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred ----HHHHHH-CcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 001112 48999999999999999988888887763
No 6
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=53.58 E-value=22 Score=33.88 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred cccccc--hhHHHHHHHHHHHHhhcCCeeEEe-ccchhh-----HHHhhcCC---CCCChhhHHHHHHHHhhCccccccc
Q 015914 120 QGLKFT--PKIETLGYELVRILQEKGPFVALH-LRYEMD-----MLAFSGCT---HGCSMGEAEELKRLRYAYPWWREKE 188 (398)
Q Consensus 120 ~ALrF~--p~I~~lg~~lv~Rlr~~GpfiAlH-LR~E~D-----mla~sgC~---~g~~~~e~~eL~~~R~~~~~w~~k~ 188 (398)
.+|.|- ++.+.+-+.+.+.|+.+|.++..+ .+.+.+ ++..+.+. .|.+.+|.++ .|
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~---~~---------- 199 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQ---KR---------- 199 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHH---HH----------
Confidence 344444 345678888888999889877664 443321 22222111 1222222211 11
Q ss_pred cChHHHhcCCCCCCCHHHHHHHHHHcCCCCCceEE
Q 015914 189 IVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIY 223 (398)
Q Consensus 189 i~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IY 223 (398)
+.+.+-..|+|++|...+|+.-||..-..+|
T Consensus 200 ----~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 200 ----SMLENVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred ----HHHHhhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 1233456789999999999999998654443
No 7
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=53.53 E-value=20 Score=29.53 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCccccccc
Q 015914 201 PLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKEM 251 (398)
Q Consensus 201 PLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~ 251 (398)
++|-.+++-+|+-..|+ +.+|..++.++|++++++.
T Consensus 39 ~~T~~Qv~~il~~f~fd---------------~~kl~~lk~l~p~i~D~~n 74 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD---------------NDKLKALKLLYPYIVDPQN 74 (95)
T ss_pred ceeHHHHHHHHHHcCCC---------------HHHHHHHHHHhhhccCHHH
Confidence 39999999999999998 4579999999999999974
No 8
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=44.97 E-value=25 Score=30.89 Aligned_cols=29 Identities=34% Similarity=0.381 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015914 199 LCPLTPEEAALVLQALGIDKDTHIYIAAGE 228 (398)
Q Consensus 199 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 228 (398)
.|||+|||+...|+++--+ ....||..+.
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 5999999999999999764 4677876654
No 9
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=38.10 E-value=24 Score=27.83 Aligned_cols=16 Identities=50% Similarity=0.841 Sum_probs=13.5
Q ss_pred CCCCCCHHHHHHHHHHc
Q 015914 198 GLCPLTPEEAALVLQAL 214 (398)
Q Consensus 198 G~CPLtPeEvgl~Lral 214 (398)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 457 9999999999875
No 10
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=38.10 E-value=28 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=20.4
Q ss_pred HHHHHhhhhcCCCcChhHHHHHHHHH
Q 015914 313 ILVGLLDMHHNGTLSFNEFTVAVRLA 338 (398)
Q Consensus 313 ~l~~l~~~~~~~~~~w~~f~~~v~~~ 338 (398)
.+-+.||.=.+|.|+.+||...++++
T Consensus 4 ~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 4 EAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 34456777779999999999988763
No 11
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=35.11 E-value=39 Score=25.95 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.1
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCCCC
Q 015914 194 RRSQGLCPLTPEEAALVLQALGIDK 218 (398)
Q Consensus 194 ~R~~G~CPLtPeEvgl~LralGf~~ 218 (398)
.+..|.. ++++|+..+|+.|||+-
T Consensus 12 ~~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCCC-CCHHHHHHHHHHCCCeE
Confidence 4566764 99999999999999984
No 12
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=29.18 E-value=1.2e+02 Score=28.64 Aligned_cols=115 Identities=20% Similarity=0.277 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCceEEEEeccc-------cCCccchHHHHHhCCcccccccCCChHhhhhhhcccc---chh
Q 015914 200 CPLTPEEAALVLQALGIDKDTHIYIAAGEI-------YGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSS---QMA 269 (398)
Q Consensus 200 CPLtPeEvgl~LralGf~~~T~IYlA~g~i-------ygg~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s---~~A 269 (398)
|+=.+++|..+|+.||.+.++.|-+...+- ++.. ..|+..|-...+=....+.+-+.-+..+.+ ..+
T Consensus 52 P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~~~~~~~~~---~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~ 128 (219)
T PF00667_consen 52 PPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNSVKPPFPSP---ITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKE 128 (219)
T ss_dssp -SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSSCCSSSSSS---EEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCcceEEEEEecccccccccccccc---eeeeeeeeeeeecccccccceeeeeeecCCCHHHHH
Confidence 556678899999999999999999998882 1222 234455544444344444544444444432 344
Q ss_pred hhhheeccCCceeeecCCCchhhhhhhhhhhcCCCceeecChHHHHHHhhhhcCCCcChhHHHHHHHH
Q 015914 270 ALDFMVSTASDIFIPTYDGNMAKVVEGHRRYLGFKKSILLDRKILVGLLDMHHNGTLSFNEFTVAVRL 337 (398)
Q Consensus 270 AlDyiVcl~SDvFv~t~~Gnfa~~v~GhR~y~G~~kTi~Pdrk~l~~l~~~~~~~~~~w~~f~~~v~~ 337 (398)
.|..+... .|...|.. .+.-.++.++.++..|..-.+.++.|-+.+..
T Consensus 129 ~L~~l~~~-----------------~~~~~~~~---~~~~~~~t~~dil~~fps~~~pl~~ll~~lp~ 176 (219)
T PF00667_consen 129 RLLELASD-----------------EGKDDYKD---YIWRERRTLLDILEDFPSCKPPLEELLELLPP 176 (219)
T ss_dssp HHHHCTSS-----------------HHHHHHHH---HTTTTTHCHHHHHHHSTTBTC-HHHHHHHS-B
T ss_pred HHHHhcch-----------------hhhhhhhh---hhhcccCcHHHHHhhCcccCCCHHHhhhhCCC
Confidence 55554332 23333332 12234677888888887777888877766543
No 13
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=29.08 E-value=1.8e+02 Score=28.95 Aligned_cols=131 Identities=27% Similarity=0.402 Sum_probs=70.8
Q ss_pred HHHHhhCcccccc------ccChHHHhcCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHH-------
Q 015914 175 KRLRYAYPWWREK------EIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRA------- 241 (398)
Q Consensus 175 ~~~R~~~~~w~~k------~i~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~------- 241 (398)
+++|+++|.|.-. .|-...+++.|..-.+|.|+=--|++-||. .|||-+-.|..|++.- -|++
T Consensus 25 ~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~~~eaL~~L~~~G~~---~V~VQplhiipG~Ey~-~l~~~v~~~~~ 100 (262)
T PF06180_consen 25 KAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDSPEEALAKLADEGYT---EVVVQPLHIIPGEEYE-KLRATVEAYKH 100 (262)
T ss_dssp HHHHHCSTTSEEEEEES-HHHHHHHHHCHT-----HHHHHHHHHHCT-----EEEEEE--SCSSHHHH-HHHHHHHHHCC
T ss_pred HHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCCHHHHHHHHHHCCCC---EEEEeecceeCcHhHH-HHHHHHHHhhc
Confidence 4455666766432 222223344577789999999999999998 8999999998887643 3433
Q ss_pred hCCcccccccCCC-------hHhhhh-------------------hhccccc------hhhhhheeccC--CceeeecCC
Q 015914 242 AFPRIVRKEMLLD-------PAELQL-------------------FQNHSSQ------MAALDFMVSTA--SDIFIPTYD 287 (398)
Q Consensus 242 ~fPnl~tKe~L~~-------~eeL~p-------------------f~~~~s~------~AAlDyiVcl~--SDvFv~t~~ 287 (398)
-|.++.--.-|++ .++.+- |-.|++. -++|+++.... -+|||+|-.
T Consensus 101 ~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvE 180 (262)
T PF06180_consen 101 DFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVE 180 (262)
T ss_dssp CSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETT
T ss_pred cCCeEEecccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3555444444554 434311 3445442 35667766665 479999999
Q ss_pred C--chhhhhhhhhhhcCCCc-eeecC
Q 015914 288 G--NMAKVVEGHRRYLGFKK-SILLD 310 (398)
Q Consensus 288 G--nfa~~v~GhR~y~G~~k-Ti~Pd 310 (398)
| ++..++.--+. .|.++ ++.|-
T Consensus 181 G~P~~~~vi~~L~~-~g~k~V~L~Pl 205 (262)
T PF06180_consen 181 GYPSLEDVIARLKK-KGIKKVHLIPL 205 (262)
T ss_dssp SSSBHHHHHHHHHH-HT-SEEEEEEE
T ss_pred CCCCHHHHHHHHHh-cCCCeEEEEec
Confidence 8 57776653333 35443 66663
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=27.68 E-value=66 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=20.4
Q ss_pred cChHHHHHHh---hhhcCCCcChhHHHHHHHH
Q 015914 309 LDRKILVGLL---DMHHNGTLSFNEFTVAVRL 337 (398)
Q Consensus 309 Pdrk~l~~l~---~~~~~~~~~w~~f~~~v~~ 337 (398)
++...+..|| |.-.+|.|+|.||...+..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4555455554 5455899999999988764
No 15
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=25.24 E-value=48 Score=25.94 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=16.7
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCCCC
Q 015914 194 RRSQGLCPLTPEEAALVLQALGIDK 218 (398)
Q Consensus 194 ~R~~G~CPLtPeEvgl~LralGf~~ 218 (398)
.|..|.. ++++|+.-+|+.|||.-
T Consensus 12 ~~~lG~~-i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 12 NKLLGID-ISPEEIIKILKRLGFKV 35 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EE
T ss_pred HHHhCCC-CCHHHHHHHHHHCCCEE
Confidence 4556765 99999999999999983
No 16
>PRK10556 hypothetical protein; Provisional
Probab=23.43 E-value=51 Score=28.74 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 015914 202 LTPEEAALVLQALGIDKDT 220 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~T 220 (398)
|-|.||+.+|..-||..++
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 17
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=1.3e+02 Score=30.21 Aligned_cols=72 Identities=26% Similarity=0.311 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccCCceeeec
Q 015914 206 EAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPT 285 (398)
Q Consensus 206 Evgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~SDvFv~t 285 (398)
|++..|.+-| .+|.|.+|. .-.+..+-+.+..++.+. |+....|.- .+||- ..||.||++
T Consensus 199 ~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k~sL~e-------~~~li----~~a~l~I~~ 258 (334)
T COG0859 199 ELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGKTSLEE-------LAALI----AGADLVIGN 258 (334)
T ss_pred HHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCCCCHHH-------HHHHH----hcCCEEEcc
Confidence 5777888888 689999988 344555677888887554 433333321 22222 679999999
Q ss_pred CCCchhhhhhhh
Q 015914 286 YDGNMAKVVEGH 297 (398)
Q Consensus 286 ~~Gnfa~~v~Gh 297 (398)
.+|-|.-+-+-+
T Consensus 259 DSg~~HlAaA~~ 270 (334)
T COG0859 259 DSGPMHLAAALG 270 (334)
T ss_pred CChHHHHHHHcC
Confidence 999655444433
No 18
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=21.83 E-value=99 Score=27.52 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCCCceEEEEec
Q 015914 206 EAALVLQALGIDKDTHIYIAAG 227 (398)
Q Consensus 206 Evgl~LralGf~~~T~IYlA~g 227 (398)
+....-++||||..|.||.|.=
T Consensus 81 ~A~~~A~~lG~p~gt~IYfavD 102 (136)
T PF08924_consen 81 DAVAAARALGFPAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHHTT--SS-EEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEee
Confidence 4456678999999999999976
No 19
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=21.54 E-value=2.4e+02 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=29.0
Q ss_pred hhhcccccccchhHHHHHHHHHHHHhhcCCeeEEecc
Q 015914 115 CRVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLR 151 (398)
Q Consensus 115 Crvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR 151 (398)
+-+...+|...++.+++-+.+.+.|+.+|.++-+..-
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 3345566777888999999999999999998777653
No 20
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.13 E-value=1.5e+02 Score=31.39 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=66.7
Q ss_pred ceEEEEeccccC---CccchHHHHHhCCccc------------ccccCCChHhhhh----------hhccccchhhhhhe
Q 015914 220 THIYIAAGEIYG---GEKRLAALRAAFPRIV------------RKEMLLDPAELQL----------FQNHSSQMAALDFM 274 (398)
Q Consensus 220 T~IYlA~g~iyg---g~~~l~~L~~~fPnl~------------tKe~L~~~eeL~p----------f~~~~s~~AAlDyi 274 (398)
..|+|.+||.-| |..-+..|++.||++. --++|.+.+|+.- +.-..-+...+-++
T Consensus 2 ~ki~i~AGE~SGDllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i 81 (381)
T COG0763 2 LKIALSAGEASGDLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYI 81 (381)
T ss_pred ceEEEEecccchhhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888877654 4456899999998653 2356666666621 11112245567788
Q ss_pred eccCCceeeecCCCchhhhhhhhhhhcC-CCcee----------ecCh-HHHHHHhh
Q 015914 275 VSTASDIFIPTYDGNMAKVVEGHRRYLG-FKKSI----------LLDR-KILVGLLD 319 (398)
Q Consensus 275 Vcl~SDvFv~t~~Gnfa~~v~GhR~y~G-~~kTi----------~Pdr-k~l~~l~~ 319 (398)
+....|+||.-.+..|---|...=+-.| +.|+| +|+| .+++...|
T Consensus 82 ~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D 138 (381)
T COG0763 82 LANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVD 138 (381)
T ss_pred HhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhh
Confidence 9999999999999988887877666667 44554 4566 45555544
No 21
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=20.67 E-value=49 Score=29.10 Aligned_cols=19 Identities=42% Similarity=0.725 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHcCCCCCc
Q 015914 202 LTPEEAALVLQALGIDKDT 220 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~T 220 (398)
|-|.||+.+|..-||..+.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998553
No 22
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=20.57 E-value=1.2e+02 Score=26.22 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHcCCCCCce--EEEEeccccCCccc
Q 015914 202 LTPEEAALVLQALGIDKDTH--IYIAAGEIYGGEKR 235 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~T~--IYlA~g~iygg~~~ 235 (398)
|+||.++-+|+-|.-+.+|+ ||=+.|.+-...+.
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll~DSr~ 36 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDGNLLADSRV 36 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCCCEEeeccc
Confidence 68999999999999999985 66677775544433
No 23
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=20.07 E-value=1.1e+02 Score=29.19 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCCCceEEEEeccc
Q 015914 206 EAALVLQALGIDKDTHIYIAAGEI 229 (398)
Q Consensus 206 Evgl~LralGf~~~T~IYlA~g~i 229 (398)
+....-+++|||..|.||+|-=.-
T Consensus 93 ~A~~~A~~lG~p~gs~IYfavD~d 116 (212)
T cd06418 93 DAVAAARALGFPPGTIIYFAVDFD 116 (212)
T ss_pred HHHHHHHHcCCCCCCEEEEEeecC
Confidence 345677899999999999998663
Done!