Query 015914
Match_columns 398
No_of_seqs 170 out of 375
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.3 1.6E-12 5.6E-17 130.1 6.2 166 120-305 217-383 (408)
2 3zy2_A Putative GDP-fucose pro 98.5 4.1E-07 1.4E-11 91.0 10.1 170 88-302 165-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 96.9 0.0061 2.1E-07 63.7 12.0 145 122-302 274-421 (526)
4 2hhc_A NODZ, nodulation fucosy 95.1 0.05 1.7E-06 52.3 7.8 143 116-295 142-294 (330)
5 3l32_A Phosphoprotein; antipar 39.2 14 0.00049 26.6 1.8 26 121-146 2-27 (45)
6 1p3q_Q VPS9P, vacuolar protein 34.0 13 0.00046 27.7 1.0 38 234-276 14-51 (54)
7 2l2e_A Calcium-binding protein 29.7 68 0.0023 26.5 4.9 49 286-339 76-129 (190)
8 1wgl_A TOLL-interacting protei 29.4 21 0.00072 26.7 1.5 48 233-285 10-57 (59)
9 2ct9_A Calcium-binding protein 29.0 74 0.0025 27.1 5.2 29 310-338 111-142 (208)
10 1s6c_A KV4 potassium channel-i 28.6 13 0.00044 30.8 0.2 29 311-339 91-122 (183)
11 1l2m_A REP protein; A+B fold, 25.5 74 0.0025 27.0 4.4 29 199-228 17-45 (118)
12 2dhy_A CUE domain-containing p 23.6 24 0.00081 27.2 0.8 41 233-278 19-59 (67)
13 2g7j_A Putative cytoplasmic pr 21.4 34 0.0012 29.1 1.5 18 202-219 3-20 (124)
14 1fi6_A EH domain protein REPS1 21.2 81 0.0028 23.9 3.5 39 311-349 42-83 (92)
15 3zy2_A Putative GDP-fucose pro 20.8 21 0.00073 35.8 0.1 49 3-58 32-82 (362)
16 1qjt_A EH1, epidermal growth f 20.1 96 0.0033 24.1 3.8 38 311-348 44-84 (99)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.30 E-value=1.6e-12 Score=130.12 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=105.0
Q ss_pred cccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHhc-CC
Q 015914 120 QGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRS-QG 198 (398)
Q Consensus 120 ~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~-~G 198 (398)
..|+|++.|.+.|+..++..- +++|+++|+|...|+... |.......-. -+.--||+.... ... ..
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L-~~~~~~~h~r~~~dw~~~--~~~~~~~~~~------~y~~~H~Rr~d~----~~~~~~ 283 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHL-NSTDDADRIPFQEDWMKM--KVKLGSALGG------PYLGVHLRRKDF----IWGHRQ 283 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHH-CCCTTTTTCCCCSSGGGC--CCCTTCBCCE------EEEEEEECCTTT----TTTTCS
T ss_pred HHhhhhHHHHHHHHHHHHHHh-CcccceeecccchhHhhh--hcccccccCC------Cccccccccccc----hhhhhc
Confidence 479999999999999988765 368888888888877653 4331110000 000012221100 001 12
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccC
Q 015914 199 LCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTA 278 (398)
Q Consensus 199 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~ 278 (398)
.+|-.++-+..+.+.+.=.+-+.||||+-+. +..+..|++.+|.++.-.. ..+++..+. ..+.|.||-+||.+
T Consensus 284 ~~ps~~~~~~~i~~~~~~~~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~ 356 (408)
T 4ap5_A 284 DVPSLEGAVRKIRSLMKTHRLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAH 356 (408)
T ss_dssp SSCCHHHHHHHHHHHHHHHTCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHh
Confidence 2333333333333333222445899998652 4457889999998763222 245555542 34679999999999
Q ss_pred CceeeecCCCchhhhhhhhhhhcCCCc
Q 015914 279 SDIFIPTYDGNMAKVVEGHRRYLGFKK 305 (398)
Q Consensus 279 SDvFv~t~~Gnfa~~v~GhR~y~G~~k 305 (398)
||+||+|..++|+..|.-.|.+.|+..
T Consensus 357 a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 357 ARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp EEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred CCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 999999999999999999999999763
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.48 E-value=4.1e-07 Score=90.99 Aligned_cols=170 Identities=16% Similarity=0.291 Sum_probs=108.3
Q ss_pred cCceEEEeccCcccccCCCC--chhhhhhhhhcccccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCC
Q 015914 88 KHKVLHFNRTDTRLANNGIP--FDLQKLRCRVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHG 165 (398)
Q Consensus 88 k~~Vi~l~~~~~rLa~~~lp--~~iQrLRCrvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g 165 (398)
+|=|+.|++.-.- +-..+ -.||| -|+++++|.+.|++.++.--. +||||+|||-=.|+.-. |.+.
T Consensus 165 ~~pVlAf~gaPa~--FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~-rpyVgIHLR~G~DW~~a--C~hl 231 (362)
T 3zy2_A 165 EYPVLAFSSAPAP--FPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA-KPFVAVHLRNDADWVRV--CEHI 231 (362)
T ss_dssp TCSEEEESSCSSC--SSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC-SSEEEEEECCCHHHHHH--HHTC
T ss_pred cCceEeecCCCCC--CCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC-CCeEEEEEecCCcHHHH--Hhhh
Confidence 5788888754331 11111 14554 699999999999998888433 49999999999999876 7652
Q ss_pred CChhhHHHHHHHHhhCccccccccChH---HHhcCC-----CCCCCHHH----HHHHHHHcCCCCCceEEEEeccccCCc
Q 015914 166 CSMGEAEELKRLRYAYPWWREKEIVSE---ERRSQG-----LCPLTPEE----AALVLQALGIDKDTHIYIAAGEIYGGE 233 (398)
Q Consensus 166 ~~~~e~~eL~~~R~~~~~w~~k~i~~~---~~R~~G-----~CPLtPeE----vgl~LralGf~~~T~IYlA~g~iygg~ 233 (398)
-..+ . ++.-. ++. -....| .|==+-++ |..+++.++.+ .||||+-. +
T Consensus 232 k~~~-------~----~~lfa---SPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa----~ 290 (362)
T 3zy2_A 232 DTTT-------N----RPLFA---SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAK---SVFVASDK----D 290 (362)
T ss_dssp CTTT-------C----CCCTT---THHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESS----C
T ss_pred cccc-------C----ccccc---CCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCC----H
Confidence 1100 0 00000 000 000111 23112223 44556666655 99999965 3
Q ss_pred cchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccCCceeeecCCCchhhhhhhhhhhcC
Q 015914 234 KRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTYDGNMAKVVEGHRRYLG 302 (398)
Q Consensus 234 ~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~SDvFv~t~~Gnfa~~v~GhR~y~G 302 (398)
..++-|++.|+....+ +.+ +. ...|+||-+||.+||+||+|..++|+..|.-.|--.|
T Consensus 291 ~~~~ELk~~L~~~~v~--vv~---~~------pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 291 HMIDEINEALKPYEIE--AHR---QE------PDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp CCHHHHHHHHGGGTCC--EEC---CS------SCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhccCce--EEE---eC------CchhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 4678889988752111 110 00 1188999999999999999999999999999999988
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.87 E-value=0.0061 Score=63.70 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=89.1
Q ss_pred cccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHhcCCCCC
Q 015914 122 LKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERRSQGLCP 201 (398)
Q Consensus 122 LrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CP 201 (398)
+|++++|++..+.+.+.+.-.+|.|+||.|-= |-++. ....-+.+ +-+.... .|
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~~~piVGVHIRrG-Dk~~~---E~~~~~~~-~Y~~~v~----~~----------------- 327 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGFKHPVIGVHVRRT-DKVGT---EAAFHPIE-EYMVHVE----EH----------------- 327 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTCCSSEEEEEECCC---------CCCSCSHH-HHHHHHH----HH-----------------
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCEEEEEEeCC-CCCcc---ccccCCHH-HHHHHHH----HH-----------------
Confidence 78999999999999988866789999999973 33221 11111110 0111111 01
Q ss_pred CCHHHHHHHHHHcCCCCCceEEEEeccccCCccchHHHHHhCCcc--cccccCCChHhh-hhhhccccchhhhhheeccC
Q 015914 202 LTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLAALRAAFPRI--VRKEMLLDPAEL-QLFQNHSSQMAALDFMVSTA 278 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fPnl--~tKe~L~~~eeL-~pf~~~~s~~AAlDyiVcl~ 278 (398)
-..|+....+..+.||||+-+ ...++-+++.||+. ++-........+ ..+...+...+.+|..+.++
T Consensus 328 ------~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~ 397 (526)
T 2de0_X 328 ------FQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQ 397 (526)
T ss_dssp ------HHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHH
T ss_pred ------HHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhc
Confidence 011222346778899999988 46677888889985 322111111111 11111122578899999999
Q ss_pred CceeeecCCCchhhhhhhhhhhcC
Q 015914 279 SDIFIPTYDGNMAKVVEGHRRYLG 302 (398)
Q Consensus 279 SDvFv~t~~Gnfa~~v~GhR~y~G 302 (398)
+|+||+|.++||++++...|.-.+
T Consensus 398 cd~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 398 ADFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp SSEEEECTTSHHHHHHHHHHTTSS
T ss_pred CCeeecCCCCHHHHHHHHHhcCcC
Confidence 999999999999999887665443
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=95.08 E-value=0.05 Score=52.26 Aligned_cols=143 Identities=12% Similarity=0.134 Sum_probs=78.2
Q ss_pred hhcccccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhH-HHHHHHHhhCccccccccChHHH
Q 015914 116 RVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEA-EELKRLRYAYPWWREKEIVSEER 194 (398)
Q Consensus 116 rvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~-~eL~~~R~~~~~w~~k~i~~~~~ 194 (398)
...|.-|+++++|++..+.+.+.+-...++|+||.|.=.+. ..|.++-.-.+. .-++.+..
T Consensus 142 ~~i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~~---~~~~~~~~~~~~~~~l~~~~~--------------- 203 (330)
T 2hhc_A 142 RLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNGE---DIMEHAPYWADSELALHQVCM--------------- 203 (330)
T ss_dssp HHHHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC---------------CHHHHHHHHHHHH---------------
T ss_pred HHHHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCCC---cccccCcchHHHhHHHHHHHH---------------
Confidence 34457889999999999998876434469999999964221 122221000000 00111111
Q ss_pred hcCCCCCCCHHHHHHHHHHc--CCC-CCceEEEEeccccCCccchHHHHHhCCcccccc-cCCCh--Hhh-hhhh-cccc
Q 015914 195 RSQGLCPLTPEEAALVLQAL--GID-KDTHIYIAAGEIYGGEKRLAALRAAFPRIVRKE-MLLDP--AEL-QLFQ-NHSS 266 (398)
Q Consensus 195 R~~G~CPLtPeEvgl~Lral--Gf~-~~T~IYlA~g~iygg~~~l~~L~~~fPnl~tKe-~L~~~--eeL-~pf~-~~~s 266 (398)
-++.+ -.+ .++.||||+-+. ..++-|++.||++.+-. .+... ..+ .+.. ....
T Consensus 204 ---------------~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 264 (330)
T 2hhc_A 204 ---------------AIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGG 264 (330)
T ss_dssp ---------------HHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHH
T ss_pred ---------------HHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccc
Confidence 11111 112 467999999884 46778999999843321 11100 000 0000 1124
Q ss_pred chhhhhheeccCCceee-ecCCCchhhhhh
Q 015914 267 QMAALDFMVSTASDIFI-PTYDGNMAKVVE 295 (398)
Q Consensus 267 ~~AAlDyiVcl~SDvFv-~t~~Gnfa~~v~ 295 (398)
+.+.+|.+....+|.+| .+..++|+...+
T Consensus 265 ~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 265 ASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred hHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 57889999999999999 544777777554
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=39.23 E-value=14 Score=26.56 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=21.4
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCee
Q 015914 121 GLKFTPKIETLGYELVRILQEKGPFV 146 (398)
Q Consensus 121 ALrF~p~I~~lg~~lv~Rlr~~Gpfi 146 (398)
|+-|+.=+.++|.++|.||++...|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHccccHH
Confidence 45678889999999999999865554
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=34.05 E-value=13 Score=27.65 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=22.6
Q ss_pred cchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheec
Q 015914 234 KRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVS 276 (398)
Q Consensus 234 ~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVc 276 (398)
..+..|++|||++- +|.+ ..-|. .+.+...+|||-...
T Consensus 14 ~~~~~L~~MFP~lD-~evI--~~Vl~--a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD-PSLI--EDVCI--AAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSC-HHHH--HHHHH--HSCC--CGGGC----
T ss_pred HHHHHHHHHcccCC-HHHH--HHHHH--HcCCCHHHHHHHHHh
Confidence 45788999999974 5443 33344 667788889987544
No 7
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=29.69 E-value=68 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCC--chhhhhhhhhhhcCCCceeecChHHHHHHhhhh---cCCCcChhHHHHHHHHHH
Q 015914 286 YDG--NMAKVVEGHRRYLGFKKSILLDRKILVGLLDMH---HNGTLSFNEFTVAVRLAH 339 (398)
Q Consensus 286 ~~G--nfa~~v~GhR~y~G~~kTi~Pdrk~l~~l~~~~---~~~~~~w~~f~~~v~~~h 339 (398)
.+| ++.-++...+.. |. .+....+..+|..+ .+|.|+++||...+..++
T Consensus 76 ~~G~i~~~ef~~~~~~~-~~----~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~ 129 (190)
T 2l2e_A 76 KNGYIDFKEFICALSVT-SR----GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIY 129 (190)
T ss_dssp STTCEEHHHHHHHHTTS-SC----SCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHHHH-cC----CCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHH
Confidence 455 455555444433 21 23455565566544 478999999999988753
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.40 E-value=21 Score=26.69 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=33.0
Q ss_pred ccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccCCceeeec
Q 015914 233 EKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPT 285 (398)
Q Consensus 233 ~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~SDvFv~t 285 (398)
+..++-|++|||++- ++.+ ..-|. ++..+..+|||-......+-|=|+
T Consensus 10 ee~l~~L~emFP~ld-~~~I--~~vL~--a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-QEVI--RSVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 567889999999863 3332 22333 455678999999888877765554
No 9
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=28.96 E-value=74 Score=27.06 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.1
Q ss_pred ChHHHHHHhhhh---cCCCcChhHHHHHHHHH
Q 015914 310 DRKILVGLLDMH---HNGTLSFNEFTVAVRLA 338 (398)
Q Consensus 310 drk~l~~l~~~~---~~~~~~w~~f~~~v~~~ 338 (398)
....+..+|..+ .+|.|+.+||...++.+
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~ 142 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMM 142 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHH
Confidence 344555555544 47889999999888764
No 10
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=28.59 E-value=13 Score=30.83 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=20.6
Q ss_pred hHHHHHHhhh---hcCCCcChhHHHHHHHHHH
Q 015914 311 RKILVGLLDM---HHNGTLSFNEFTVAVRLAH 339 (398)
Q Consensus 311 rk~l~~l~~~---~~~~~~~w~~f~~~v~~~h 339 (398)
...+..+|.. -.+|.|++++|...+..++
T Consensus 91 ~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~ 122 (183)
T 1s6c_A 91 HEKLRWTFNLYDINKDGYINKEEMMDIVKAIY 122 (183)
T ss_dssp HHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEcHHHHHHHHHHHH
Confidence 3445555544 4478999999999998764
No 11
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=25.51 E-value=74 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015914 199 LCPLTPEEAALVLQALGIDKDTHIYIAAGE 228 (398)
Q Consensus 199 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 228 (398)
.|||++||+...|+.|--+.+ ..||..+.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 699999999999999885543 56665554
No 12
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.61 E-value=24 Score=27.20 Aligned_cols=41 Identities=15% Similarity=0.366 Sum_probs=27.8
Q ss_pred ccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccC
Q 015914 233 EKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTA 278 (398)
Q Consensus 233 ~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~ 278 (398)
+..++-|++|||++- ++.+ ..-|+ ++..+..+|||-+....
T Consensus 19 ~~~v~~L~~MFP~lD-~~vI--~~vL~--a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMD-YDII--ECVLR--ANSGAVDATIDQLLQMN 59 (67)
T ss_dssp HHHHHHHHHHCSSSC-HHHH--HHHHH--HHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHhcC
Confidence 345788999999874 4433 44454 56677888888765543
No 13
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=21.40 E-value=34 Score=29.09 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 015914 202 LTPEEAALVLQALGIDKD 219 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~ 219 (398)
|-|.||+.+|...||..+
T Consensus 3 LRPDEVArVLEk~GF~~D 20 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVD 20 (124)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 789999999999999855
No 14
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.17 E-value=81 Score=23.86 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=27.4
Q ss_pred hHHHHHHhhh---hcCCCcChhHHHHHHHHHHhhccCCCeec
Q 015914 311 RKILVGLLDM---HHNGTLSFNEFTVAVRLAHEKRMGQPTRR 349 (398)
Q Consensus 311 rk~l~~l~~~---~~~~~~~w~~f~~~v~~~h~~~~G~p~~r 349 (398)
...+..++.. -.+|.|+++||...+..++....|.|...
T Consensus 42 ~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~lp~ 83 (92)
T 1fi6_A 42 ILELSHIWELSDFDKDGALTLDEFCAAFHLVVARKNGYDLPE 83 (92)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence 4455555544 34788999999999988776667776543
No 15
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.79 E-value=21 Score=35.79 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=31.3
Q ss_pred EeeecccceEeccccCCCCcCCCC--CCCCcccchHHHHHhccCceEEeccCChhhhh
Q 015914 3 TVAQLLNLTLVVPELDKTSFWADP--SNFEDIFNVRHFIDSLRDEVRIVRRLPKKYSR 58 (398)
Q Consensus 3 ~vARiLNATLVlP~l~~~s~w~D~--S~F~dIfD~dhFI~~L~~dVrIVk~LP~~~~~ 58 (398)
+.|+.||.|||||-+-.-.. +.+ -.|++-|+++. |+..-|||.- ++++.
T Consensus 32 afAk~lnRTLvlPpwi~y~~-~~~~~vpf~~yF~v~~----l~~yhrvi~m--e~Fm~ 82 (362)
T 3zy2_A 32 AFAKALDRTLVLPNFIEFKH-PETKMIPFEFLFQVGT----VAKYTRVVTM--QEFTK 82 (362)
T ss_dssp HHHHHHTCEEECCCEEECSS-SSCEEECHHHHBCHHH----HTTTSCEECH--HHHHH
T ss_pred HHHHhhCceEecCccccccC-Ccccccchhheeecch----hhhhceeeeH--HHHHH
Confidence 56999999999987642222 211 35888888875 5555577654 44443
No 16
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.08 E-value=96 Score=24.13 Aligned_cols=38 Identities=34% Similarity=0.396 Sum_probs=28.2
Q ss_pred hHHHHHHhhh---hcCCCcChhHHHHHHHHHHhhccCCCee
Q 015914 311 RKILVGLLDM---HHNGTLSFNEFTVAVRLAHEKRMGQPTR 348 (398)
Q Consensus 311 rk~l~~l~~~---~~~~~~~w~~f~~~v~~~h~~~~G~p~~ 348 (398)
...+.+++.. -.+|.|+++||...++.+.....|.|..
T Consensus 44 ~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~~~g~~~~ 84 (99)
T 1qjt_A 44 DLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVS 84 (99)
T ss_dssp HHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHcCCCCC
Confidence 4556666544 3478999999999999877777887644
Done!