Query 015914
Match_columns 398
No_of_seqs 170 out of 375
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 04:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 43.6 4.1 0.0003 29.2 1.4 50 232-286 9-58 (59)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 42.1 11 0.00082 30.1 4.0 29 199-228 17-45 (118)
3 d2ihoa2 d.3.1.18 (A:156-293) A 30.3 1.7 0.00012 35.7 -3.0 35 11-45 31-70 (138)
4 d2gh1a1 c.66.1.49 (A:13-293) M 24.5 16 0.0012 31.6 2.3 92 116-218 98-189 (281)
5 d1jjcb2 a.6.1.1 (B:400-474) Do 21.6 28 0.002 24.9 2.8 23 194-217 13-35 (75)
6 d2g7ja1 d.198.5.1 (A:1-112) Pu 21.5 18 0.0013 28.3 1.7 18 202-219 3-20 (112)
7 d1oqya2 a.5.2.1 (A:317-360) DN 20.9 6.1 0.00045 26.7 -1.0 26 203-228 1-30 (44)
8 d1tiza_ a.39.1.5 (A:) Calmodul 20.1 18 0.0013 24.6 1.3 30 308-337 33-65 (67)
9 d1nyaa_ a.39.1.5 (A:) Caleryth 18.5 49 0.0035 24.9 3.9 30 311-340 6-38 (176)
10 d1sfsa_ c.1.8.8 (A:) Unnamed h 17.1 29 0.0021 30.1 2.3 84 133-228 13-102 (213)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.55 E-value=4.1 Score=29.16 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=35.7
Q ss_pred CccchHHHHHhCCcccccccCCChHhhhhhhccccchhhhhheeccCCceeeecC
Q 015914 232 GEKRLAALRAAFPRIVRKEMLLDPAELQLFQNHSSQMAALDFMVSTASDIFIPTY 286 (398)
Q Consensus 232 g~~~l~~L~~~fPnl~tKe~L~~~eeL~pf~~~~s~~AAlDyiVcl~SDvFv~t~ 286 (398)
-+..+.-|+.|||++- ++.+ ..-|+ .+..+..+|+|=..-..-+.|-|+.
T Consensus 9 ~Ee~i~~LkeMFP~~D-~~vI--~~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMD-QEVI--RSVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHHCSSSC-HHHH--HHHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cHHHHHHHHHHCCCCC-HHHH--HHHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 3567899999999975 3333 33444 5677889999988877777776653
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=42.05 E-value=11 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCceEEEEecc
Q 015914 199 LCPLTPEEAALVLQALGIDKDTHIYIAAGE 228 (398)
Q Consensus 199 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 228 (398)
+|||++||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 5999999999999999766554 5666554
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=30.32 E-value=1.7 Score=35.66 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=28.7
Q ss_pred eEeccccCCCCcCCCC-----CCCCcccchHHHHHhccCc
Q 015914 11 TLVVPELDKTSFWADP-----SNFEDIFNVRHFIDSLRDE 45 (398)
Q Consensus 11 TLVlP~l~~~s~w~D~-----S~F~dIfD~dhFI~~L~~d 45 (398)
-||+|...-+++|+++ ..=+.|||-|.|--..+.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 4899999999999886 3457899999998776543
No 4
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}
Probab=24.49 E-value=16 Score=31.58 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=57.4
Q ss_pred hhcccccccchhHHHHHHHHHHHHhhcCCeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHhhCccccccccChHHHh
Q 015914 116 RVNFQGLKFTPKIETLGYELVRILQEKGPFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRYAYPWWREKEIVSEERR 195 (398)
Q Consensus 116 rvnf~ALrF~p~I~~lg~~lv~Rlr~~GpfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R 195 (398)
-++.++|...++.+.+-+.+.+.|+.+|.++....-...++..+ ...+....+...+..... . -....+
T Consensus 98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~------~~~~~~ 166 (281)
T d2gh1a1 98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY--LLDGEKQSEFIQLGVLQK---L------FESDTQ 166 (281)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSE--EETTSCHHHHCCHHHHHH---H------HHHHHH
T ss_pred EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhh--ccCchhhhhhhhHHHHHH---H------HHHHHH
Confidence 34556677777888888899999999998888776655555544 222222222111211111 0 112334
Q ss_pred cCCCCCCCHHHHHHHHHHcCCCC
Q 015914 196 SQGLCPLTPEEAALVLQALGIDK 218 (398)
Q Consensus 196 ~~G~CPLtPeEvgl~LralGf~~ 218 (398)
..|..|....++..+|+..||.+
T Consensus 167 ~~~~~~~i~~~l~~~l~eaGf~~ 189 (281)
T d2gh1a1 167 RNGKDGNIGMKIPIYLSELGVKN 189 (281)
T ss_dssp TTCCCTTGGGTHHHHHHHTTCEE
T ss_pred HcCCCCCHHHHHHHHHHHcCCeE
Confidence 56777777788999999999984
No 5
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=21.64 E-value=28 Score=24.95 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.0
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCCC
Q 015914 194 RRSQGLCPLTPEEAALVLQALGID 217 (398)
Q Consensus 194 ~R~~G~CPLtPeEvgl~LralGf~ 217 (398)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4566766 9999999999999996
No 6
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=21.50 E-value=18 Score=28.34 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHcCCCCC
Q 015914 202 LTPEEAALVLQALGIDKD 219 (398)
Q Consensus 202 LtPeEvgl~LralGf~~~ 219 (398)
|-|.||+.+|+.-||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 789999999999999844
No 7
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.94 E-value=6.1 Score=26.73 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=17.9
Q ss_pred CHHHHH--HHHHHcCCCCCc--eEEEEecc
Q 015914 203 TPEEAA--LVLQALGIDKDT--HIYIAAGE 228 (398)
Q Consensus 203 tPeEvg--l~LralGf~~~T--~IYlA~g~ 228 (398)
||+|.. .=|.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 444433 447899999986 46877765
No 8
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.06 E-value=18 Score=24.64 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=21.2
Q ss_pred ecChHHHHHHhhhh---cCCCcChhHHHHHHHH
Q 015914 308 LLDRKILVGLLDMH---HNGTLSFNEFTVAVRL 337 (398)
Q Consensus 308 ~Pdrk~l~~l~~~~---~~~~~~w~~f~~~v~~ 337 (398)
.+....+-.+|..+ .+|.|+|+||...+++
T Consensus 33 ~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~ 65 (67)
T d1tiza_ 33 YFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp TSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 34555666666554 4789999999988765
No 9
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=18.53 E-value=49 Score=24.89 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred hHHHHHHhhhh---cCCCcChhHHHHHHHHHHh
Q 015914 311 RKILVGLLDMH---HNGTLSFNEFTVAVRLAHE 340 (398)
Q Consensus 311 rk~l~~l~~~~---~~~~~~w~~f~~~v~~~h~ 340 (398)
+++|-++|+.+ .+|.|++.||...+.++..
T Consensus 6 ~~~l~~~F~~~D~d~dG~Is~~Ef~~~l~~~~~ 38 (176)
T d1nyaa_ 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAE 38 (176)
T ss_dssp HHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHHH
Confidence 34555666554 4899999999999987654
No 10
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.14 E-value=29 Score=30.14 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHHHhhc-C--CeeEEeccchhhHHHhhcCCCCCChhhHHHHHHHHh-hCcccccc--ccChHHHhcCCCCCCCHHH
Q 015914 133 YELVRILQEK-G--PFVALHLRYEMDMLAFSGCTHGCSMGEAEELKRLRY-AYPWWREK--EIVSEERRSQGLCPLTPEE 206 (398)
Q Consensus 133 ~~lv~Rlr~~-G--pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~-~~~~w~~k--~i~~~~~R~~G~CPLtPeE 206 (398)
+..++-||.+ | .|+.-+|--... =..+++..|.+.|.+..- -+|.|.+. ..+..+-+.. ...
T Consensus 13 ~~~~~~l~~n~Gy~~ivGRYLt~~~~------~~k~lt~~E~~~I~~~Gl~~~PIyq~~~~~~~y~qG~~d------A~~ 80 (213)
T d1sfsa_ 13 DQLFQCVRTELGYPKFWGRYLSEVPN------VSEGLTRDEIVRIRNYGVKVLPIYNAFREAVGYANGQVA------ARN 80 (213)
T ss_dssp HHHHHHHHHHTCCCSEEEEESSCBTT------TBCBCCHHHHHHHHHTTCEEEEEECCCSCBCCHHHHHHH------HHH
T ss_pred HHHHHHHHhccCCceEEEEecCCCCC------CCccCCHHHHHHHHHCCCEEEEEEecCCcccCHHHHHHH------HHH
Confidence 4455666654 3 356655532211 124566665555544331 13444321 2222222221 122
Q ss_pred HHHHHHHcCCCCCceEEEEecc
Q 015914 207 AALVLQALGIDKDTHIYIAAGE 228 (398)
Q Consensus 207 vgl~LralGf~~~T~IYlA~g~ 228 (398)
....=++|||++.|.||++-=.
T Consensus 81 A~~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 81 AVFHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHHHcCCCCCCEEEEEecc
Confidence 3345688999999999998754
Done!