BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015915
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
R ++ G D EL L G + VTI+KA+NLK M++ G SDPY +
Sbjct: 127 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 186
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
+ L K KT++ N LNP +N+ F++ E E L V D D IG ++ +G+ ++
Sbjct: 187 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIAED 322
++ V I++A +L + G SDPY +++ P K K T V LNP++N+TF+
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 323 KE--TQSLIFEVFDKD 336
E + L F V+D D
Sbjct: 82 AELAQRKLHFSVYDFD 97
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 243 RIVVPIGGIPVDTSELE-----LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI---- 293
R ++ G D EL L G + VTI+KA+NLK M++ G SDPY +
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
Query: 294 KPLFKVKTNVVDNNLNPVWNQT--FELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKL 348
+ L K KT++ N LNP +N+ F++ E E L V D D IG ++ +G+ ++
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQTFELIAED 322
++ V I++A +L + G SDPY +++ P K K T V LNP++N+TF+
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 323 KE--TQSLIFEVFDKD 336
E + L F V+D D
Sbjct: 81 AELAQRKLHFSVYDFD 96
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE---L 318
+ TI++A LK M+ G +DPY +H+ P K++T + N NPVWN+T + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
ED + ++L V D+D G ++ +G + L L+A+ K
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 132
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
+ + TI++A LK M+ G +DPY +H+ P K++T + N NPVWN+T
Sbjct: 24 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 83
Query: 317 E---LIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
+ + ED + ++L V D+D G ++ +G + L L+A+ K
Sbjct: 84 QYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 130
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 247 PIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHI------KPLFKVK 300
P+ G+ D E + + V +V +L ++ G SDPY + + + L V+
Sbjct: 9 PVYGLSEDEGESRI-----LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ 63
Query: 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTP 358
T + LNP WN+ F + L+FEVFD++ + +D LG V +PL L + P
Sbjct: 64 TKTIKKTLNPKWNEEFYFRV-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDP 121
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQTFELIA 320
V V ++ L +++G SDPY V + L V+T + +LNP WN+ L
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI-LFR 80
Query: 321 EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
+ L+FEVFD++ + +D LG V +PL L + P+
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWNQT--FEL 318
V V ++ L +++G SDPY V + L V+T + +LNP WN+ F +
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK 359
+ + ++FEVFD++ + +D LG V +PL L + P+
Sbjct: 70 LP---QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 108
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIA 320
P G + V +V A L++ + + DPY + + + K+NV + P WN+TF
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTV 66
Query: 321 EDKETQSLIFEVFDKDIG-QDKRLGIVKLPL 350
+ T+ L ++FDKD+G +D +G +PL
Sbjct: 67 SEGTTE-LKAKIFDKDVGTEDDAVGEATIPL 96
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIA 320
K K+++T+V A L+ + G SDPY V + K +T + NLNPVW + F
Sbjct: 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT-KKRTKTIYGNLNPVWEENFHFEC 72
Query: 321 EDKETQSLIFEVFDKD 336
+ + + V D+D
Sbjct: 73 HN-SSDRIKVRVLDED 87
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQT--FEL 318
+ + V I+KA L + G SDP+ +++ P K++T V NLNP WN+T FE
Sbjct: 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG 84
Query: 319 IAEDKETQSLIF-EVFDKD-IGQDKRLGIVKLPL 350
+K Q +++ +V D D ++ +G V +PL
Sbjct: 85 FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 265 KVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVWNQTFELI 319
K V +++A + +M+ DPY + I P + +T +N++NPVWN+TFE I
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 320 AEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
+ + L + D + D+ LG + ++ KE
Sbjct: 64 LDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 104
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
+E + K V +++A + +M+ DPY + I P + +T +N++NPVW
Sbjct: 12 VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
N+TFE I + + L + D + D+ LG + ++ KE
Sbjct: 72 NETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 119
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK 323
G++ V +++A LK + GKS+PY + + T + + LNP WN + +D
Sbjct: 387 GRLMVHVIEATELKACKPNGKSNPYCEISMGSQ-SYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 324 ETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD 356
L +FD+D D LG ++P+ + +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTE 479
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQT 315
S ++K G + V ++KA +L + GKSDP+ ++ + +++T+ V NLNP WN+
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND-RLQTHTVYKNLNPEWNKV 63
Query: 316 FELIAEDKETQSLIFEVFDKDIGQDK---RLGIVKLPLIDLEADTPK 359
F +D L VFD+D DK LG V +PL+ + P
Sbjct: 64 FTFPIKDIH-DVLEVTVFDED--GDKPPDFLGKVAIPLLSIRDGQPN 107
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQT--FEL 318
++ VT+ +A NL M+ G SDPY + + P L K KT V LNPVWN+T F L
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 319 IAEDKETQSLIFEVFDKD 336
D E + L EV+D D
Sbjct: 81 KPGDVE-RRLSVEVWDWD 97
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 258 LELKPQGKVAVTIVKANNLKNM---EMIGKSDPYAVVHIK--PLFKVKTNVVDNNLNPVW 312
+E + K V +++A + +M+ DPY + I P + +T +N++NPVW
Sbjct: 12 VEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71
Query: 313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKE 360
N+TFE I + + L + D + D+ LG + ++ KE
Sbjct: 72 NETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE 119
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF-- 316
QG + V I++ +L M+ G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
++ D +SL V+D DIG+ + +G +L + + E RL + LK K
Sbjct: 96 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-------SAKGE-RLKHWYECLKNK 147
Query: 376 DKK 378
DKK
Sbjct: 148 DKK 150
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQT--FELI 319
+ V I+KA NLK M++ G SDPY V + K + K KT NLNP++N++ F++
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 320 AEDKETQSLIFEVFDKD 336
E ++I V DKD
Sbjct: 78 TEKLRETTIIITVMDKD 94
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF----KVKTNVVDNNLNPVWNQTF-- 316
QG + V I++ +L M+ G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
++ D +SL V+D DIG+ + +G +L + + E RL + LK K
Sbjct: 74 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-------SAKGE-RLKHWYECLKNK 125
Query: 376 DKK 378
DKK
Sbjct: 126 DKK 128
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL M+ G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 319 IAEDKETQSLIFEVFDKD 336
DK+ + L E++D D
Sbjct: 78 KPSDKD-RRLSVEIWDWD 94
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL M+ G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 319 IAEDKETQSLIFEVFDKD 336
DK+ + L E++D D
Sbjct: 77 KPSDKD-RRLSVEIWDWD 93
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N+ +FE
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIV 346
+ E + ++ V D D IG++ +G V
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 114
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL-IAED 322
V + A NL M+ G SDPY + + K K KT + ++LNP WN+TF + E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 323 KETQSLIFEVFDKDI 337
+ + L E++D D+
Sbjct: 236 DKDRRLSVEIWDWDL 250
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N+ +FE
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIV 346
+ E + ++ V D D IG++ +G V
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 106
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N+ +FE
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIV 346
+ E + ++ V D D IG++ +G V
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 107
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 268 VTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFEL-IAED 322
V + A NL M+ G SDPY + + K K KT + +LNP WN+TF + E
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 323 KETQSLIFEVFDKDI 337
+ + L E++D D+
Sbjct: 95 DKDRRLSVEIWDWDL 109
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFE 317
GK+ V I++A NLK M++ G SDPY +H+ K L K KT + N LNP +N+ +FE
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 318 LIAEDKETQSLIFEVFDKD-IGQDKRLGIV 346
+ E + ++ V D D IG++ +G V
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKV 239
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFELI 319
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 78
Query: 320 AEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
+ ++L+ V+D D + +G K+P+
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM 110
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF-- 316
QG + V I++ +L + G SDP+ + +KP K KT + LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 317 ELIAEDKETQSLIFEVFDKDIGQ-DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIK 375
++ D +SL V+D DIG+ + +G +L + + E RL + LK K
Sbjct: 96 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGI-------SAKGE-RLKHWYECLKNK 147
Query: 376 DKK 378
DKK
Sbjct: 148 DKK 150
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQ--TFEL 318
K+ VT+ A NL + G SDPY + + P K KT + + LNP WN+ TF+L
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 319 IAEDKETQSLIFEVFDKD 336
DK+ + L E++D D
Sbjct: 79 KPSDKD-RRLSVEIWDWD 95
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFEL 318
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
+ ++L+ V+D D + +G K+P+
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFEL 318
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
+ ++L+ V+D D + +G K+P+
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFEL---- 318
G + V + A+N+ + GK DP V I K KT VDN LNPVWN+ E
Sbjct: 6 SGMLRVIVESASNIPKTKF-GKPDPIVSV-IFKDEKKKTKKVDNELNPVWNEILEFDLRG 63
Query: 319 IAED-KETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLD 370
I D + +I + F+ IGQ+K +G + L DL D + +L+ L+
Sbjct: 64 IPLDFSSSLGIIVKDFET-IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN 115
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFEL 318
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 319 IAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
+ ++L+ V+D D + +G K+P+
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVK--TNVVDNNLNPVWNQ--TFELI 319
++ V I++A L ++M G SDPY V + P K K T V LNPV+N+ TF++
Sbjct: 17 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 76
Query: 320 AEDKETQSLIFEVFDKD-IGQDKRLGIVKLPL 350
+ ++L+ V+D D + +G K+P+
Sbjct: 77 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 108
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 23/133 (17%)
Query: 255 TSELELKPQ---GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-------------LFK 298
T E++L+ G + + I++A NL + G SDP+ V++ P +K
Sbjct: 6 TGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYK 65
Query: 299 VKTNVVDNNLNPVWNQT--FELIA-EDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354
+T V +LNP WNQT ++ I+ E ++L V+D D + LG V LIDL
Sbjct: 66 RRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEV---LIDLS 122
Query: 355 ADTPKEAELRLLP 367
+ + + R P
Sbjct: 123 STSHLDNTPRWYP 135
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-KTNVVDNNLNPVWNQTFELIAEDK 323
K+ +T++ A NL + DP+A + + + T+ V N L+P WNQ ++L
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 324 ETQSLIFEVFDKDIGQDKR----LGIVKL 348
+T S+ V++ K+ LG V+L
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRL 92
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQ--TFELI 319
+ V ++KA +L ++ G SDPY V++ K + K KT+V N V+N+ F++
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 320 AEDKETQSLIFEVFDKDIGQ 339
E E S+ F V D + G
Sbjct: 92 CESLEEISVEFLVLDSERGS 111
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFEL 318
+ K+ V + NL G SDPY +++ P + KT+V LNPV++Q+F+
Sbjct: 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDF 81
Query: 319 IAEDKETQSLIFEVFDKDIG 338
E Q +V K+ G
Sbjct: 82 SVSLPEVQRRTLDVAVKNSG 101
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKV-KTNVVDNNLNPVWNQTFEL 318
K+ +T++ A NL + DP+A V + + T+ V N L+P WNQ ++L
Sbjct: 4 KLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDL 58
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
++ VTI+ A +L + E +PY ++ P K +T V L P WNQTF
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTF 316
++ VTI+ A +L + E +PY ++ P K +T V L P WNQTF
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 268 VTIVKANNLKNM-EMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIA---E 321
V I +A L M E SDPY + I P KVKT V+ L+P +++TF
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85
Query: 322 DKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354
+ +L F + D +D +G V +PL +E
Sbjct: 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 303 VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLID 352
V+DN L W+ + + +E Q+ + + F++D+ QD+R+ I +PL D
Sbjct: 179 VIDNVL---WHGKVTEV-DPQEAQTQVLQQFNRDLAQDERVRISVIPLGD 224
>pdb|3UKJ|A Chain A, Crystal Structure Of Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris Haa2
pdb|4EYO|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With P-Coumaric Acid
pdb|4EYQ|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With Caffeic Acid3-(4- Hydroxy-Phenyl)pyruvic
Acid
Length = 362
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 232 SIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-----GKVAVTIVKANNLKNMEMIGKSD 286
S + + Q PH + P+ P + PQ GKV K NN+K + IG SD
Sbjct: 86 SNVANEAQVPHIALAPLPVTPERAKWSVVXPQPIPIXGKVLYEHXKKNNIKTVGYIGYSD 145
Query: 287 PYA 289
Y
Sbjct: 146 SYG 148
>pdb|3UK0|A Chain A, Rpd_1889 Protein, An Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris
Length = 362
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 232 SIITDMLQWPHRIVVPIGGIPVDTSELELKPQ-----GKVAVTIVKANNLKNMEMIGKSD 286
S + + Q PH + P+ P + PQ GKV K NN+K + IG SD
Sbjct: 86 SNVANEAQIPHIALAPLPITPERAKWSVVXPQPIPIXGKVLYEHXKKNNVKTVGYIGYSD 145
Query: 287 PYA 289
Y
Sbjct: 146 SYG 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,155,612
Number of Sequences: 62578
Number of extensions: 454706
Number of successful extensions: 1198
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 55
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)