Query 015915
Match_columns 398
No_of_seqs 329 out of 1676
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 02:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.5E-51 3.3E-56 423.2 32.1 318 65-398 218-563 (1227)
2 cd04016 C2_Tollip C2 domain pr 99.9 6.8E-23 1.5E-27 167.8 14.6 118 263-391 1-121 (121)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 2.9E-21 6.3E-26 160.4 13.5 118 266-388 1-126 (126)
4 cd04042 C2A_MCTP_PRT C2 domain 99.9 4.9E-21 1.1E-25 157.9 14.5 119 266-393 2-121 (121)
5 cd08681 C2_fungal_Inn1p-like C 99.9 6E-21 1.3E-25 156.6 12.8 115 264-388 1-117 (118)
6 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.1E-20 6.7E-25 153.1 13.4 115 265-385 1-125 (126)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.3E-20 1.4E-24 150.1 14.2 114 265-392 1-115 (116)
8 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.3E-19 2.8E-24 150.4 15.1 121 263-393 3-124 (126)
9 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.3E-20 1.2E-24 153.0 12.6 120 265-392 1-126 (127)
10 KOG1030 Predicted Ca2+-depende 99.8 2.6E-20 5.5E-25 156.1 10.6 98 261-360 3-101 (168)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 8.4E-20 1.8E-24 150.3 13.5 117 266-388 2-120 (121)
12 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.7E-20 2.1E-24 150.6 13.8 121 265-387 1-122 (123)
13 cd08375 C2_Intersectin C2 doma 99.8 1.3E-19 2.8E-24 152.2 14.6 119 261-388 12-134 (136)
14 cd04024 C2A_Synaptotagmin-like 99.8 1.1E-19 2.5E-24 151.1 14.0 121 264-388 1-127 (128)
15 cd04015 C2_plant_PLD C2 domain 99.8 1.5E-19 3.3E-24 155.6 14.8 123 263-392 6-158 (158)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.4E-19 3.1E-24 154.2 14.2 126 265-393 1-133 (150)
17 cd08677 C2A_Synaptotagmin-13 C 99.8 7.7E-20 1.7E-24 147.6 10.6 107 255-364 5-117 (118)
18 cd04044 C2A_Tricalbin-like C2 99.8 1.6E-19 3.5E-24 149.4 12.8 120 263-393 1-124 (124)
19 cd08678 C2_C21orf25-like C2 do 99.8 2.2E-19 4.7E-24 149.1 13.6 121 266-395 1-123 (126)
20 cd08395 C2C_Munc13 C2 domain t 99.8 1.9E-19 4E-24 147.2 12.2 103 265-368 1-113 (120)
21 cd04036 C2_cPLA2 C2 domain pre 99.8 2.6E-19 5.7E-24 147.1 13.2 112 266-388 2-116 (119)
22 cd08378 C2B_MCTP_PRT_plant C2 99.8 4E-19 8.8E-24 146.3 13.0 112 266-388 2-118 (121)
23 cd08391 C2A_C2C_Synaptotagmin_ 99.8 5.5E-19 1.2E-23 145.5 13.7 113 264-388 1-120 (121)
24 cd04046 C2_Calpain C2 domain p 99.8 9.6E-19 2.1E-23 145.2 15.2 124 262-394 1-124 (126)
25 cd08381 C2B_PI3K_class_II C2 d 99.8 3.6E-19 7.8E-24 146.8 11.8 102 263-365 12-121 (122)
26 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.9E-18 4.1E-23 141.9 14.7 116 264-388 1-117 (119)
27 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.4E-18 2.9E-23 143.3 13.7 117 266-388 2-120 (121)
28 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.2E-18 2.7E-23 145.9 13.4 120 265-392 1-133 (133)
29 cd04028 C2B_RIM1alpha C2 domai 99.8 1.4E-18 3E-23 146.7 13.1 106 262-368 27-139 (146)
30 cd08393 C2A_SLP-1_2 C2 domain 99.8 1E-18 2.2E-23 144.8 11.6 110 256-365 7-124 (125)
31 cd08387 C2A_Synaptotagmin-8 C2 99.8 1E-18 2.2E-23 144.7 11.5 111 256-366 8-123 (124)
32 cd04010 C2B_RasA3 C2 domain se 99.8 1.5E-18 3.3E-23 147.3 12.2 121 265-387 1-147 (148)
33 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.7E-18 3.6E-23 143.4 11.6 110 256-365 7-124 (125)
34 cd08373 C2A_Ferlin C2 domain f 99.8 5.2E-18 1.1E-22 141.0 14.3 116 270-396 2-120 (127)
35 cd08382 C2_Smurf-like C2 domai 99.8 3.5E-18 7.7E-23 141.2 13.1 118 266-388 2-123 (123)
36 cd04014 C2_PKC_epsilon C2 doma 99.8 6.4E-18 1.4E-22 141.4 14.3 115 263-393 3-130 (132)
37 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.3E-18 1.4E-22 139.9 12.1 109 258-366 10-123 (124)
38 cd04017 C2D_Ferlin C2 domain f 99.8 1.6E-17 3.4E-22 139.6 14.6 120 265-395 2-135 (135)
39 cd04039 C2_PSD C2 domain prese 99.8 5.6E-18 1.2E-22 136.4 11.2 94 264-358 1-100 (108)
40 cd08392 C2A_SLP-3 C2 domain fi 99.8 6.4E-18 1.4E-22 140.3 11.5 111 255-365 6-127 (128)
41 cd08388 C2A_Synaptotagmin-4-11 99.8 7.9E-18 1.7E-22 140.0 11.8 111 256-366 8-127 (128)
42 cd04050 C2B_Synaptotagmin-like 99.8 8.2E-18 1.8E-22 135.0 11.5 100 265-367 1-102 (105)
43 cd08680 C2_Kibra C2 domain fou 99.8 5.8E-18 1.3E-22 139.5 10.7 110 256-365 6-124 (124)
44 cd04027 C2B_Munc13 C2 domain s 99.7 2.2E-17 4.7E-22 137.3 13.6 114 265-387 2-127 (127)
45 cd08685 C2_RGS-like C2 domain 99.7 7.5E-18 1.6E-22 138.2 10.4 103 262-365 10-119 (119)
46 cd04041 C2A_fungal C2 domain f 99.7 6.2E-18 1.3E-22 137.2 9.8 99 264-365 1-106 (111)
47 cd04030 C2C_KIAA1228 C2 domain 99.7 1.5E-17 3.3E-22 138.1 12.4 110 256-365 8-126 (127)
48 cd04031 C2A_RIM1alpha C2 domai 99.7 1.3E-17 2.7E-22 138.3 11.7 109 256-365 8-124 (125)
49 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-17 3.4E-22 137.7 12.2 111 256-366 8-124 (125)
50 cd04043 C2_Munc13_fungal C2 do 99.7 4.2E-17 9.1E-22 135.3 14.5 112 265-388 2-119 (126)
51 cd08521 C2A_SLP C2 domain firs 99.7 1.2E-17 2.5E-22 138.0 11.1 110 256-365 6-123 (123)
52 cd04051 C2_SRC2_like C2 domain 99.7 9.6E-18 2.1E-22 139.0 10.5 114 265-385 1-125 (125)
53 cd04040 C2D_Tricalbin-like C2 99.7 2.5E-17 5.5E-22 134.4 12.4 112 266-384 1-113 (115)
54 cd04049 C2_putative_Elicitor-r 99.7 1.9E-17 4.2E-22 137.0 11.7 104 264-368 1-109 (124)
55 cd08688 C2_KIAA0528-like C2 do 99.7 2.1E-17 4.5E-22 133.8 10.6 100 266-366 1-108 (110)
56 cd08394 C2A_Munc13 C2 domain f 99.7 3.2E-17 7E-22 133.7 11.6 99 264-368 2-102 (127)
57 cd08389 C2A_Synaptotagmin-14_1 99.7 2.8E-17 6.1E-22 135.9 11.4 111 255-366 7-123 (124)
58 PLN03008 Phospholipase D delta 99.7 3.2E-17 7E-22 168.3 13.7 127 263-397 13-182 (868)
59 cd04045 C2C_Tricalbin-like C2 99.7 4.9E-17 1.1E-21 133.7 11.7 102 264-367 1-103 (120)
60 cd08390 C2A_Synaptotagmin-15-1 99.7 5.6E-17 1.2E-21 134.0 11.9 111 256-366 6-122 (123)
61 cd08676 C2A_Munc13-like C2 dom 99.7 4.3E-17 9.4E-22 138.8 11.3 102 260-365 24-153 (153)
62 cd08690 C2_Freud-1 C2 domain f 99.7 3.3E-16 7.1E-21 133.2 14.6 119 263-388 3-135 (155)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9.2E-17 2E-21 138.9 11.4 106 261-366 24-137 (162)
64 cd04038 C2_ArfGAP C2 domain pr 99.7 1.5E-16 3.2E-21 134.7 11.3 91 263-356 1-92 (145)
65 cd04032 C2_Perforin C2 domain 99.7 1.6E-16 3.4E-21 131.3 11.1 93 261-355 25-119 (127)
66 cd08675 C2B_RasGAP C2 domain s 99.7 1.4E-16 3E-21 134.0 11.0 102 266-368 1-121 (137)
67 cd08384 C2B_Rabphilin_Doc2 C2 99.7 5.6E-17 1.2E-21 135.9 8.5 110 256-367 5-121 (133)
68 cd04052 C2B_Tricalbin-like C2 99.7 1.7E-16 3.7E-21 128.7 11.0 101 281-394 9-111 (111)
69 cd04037 C2E_Ferlin C2 domain f 99.7 2E-16 4.4E-21 130.8 10.6 118 265-393 1-120 (124)
70 cd04013 C2_SynGAP_like C2 doma 99.7 6.2E-16 1.3E-20 130.2 13.4 128 261-396 8-143 (146)
71 cd04018 C2C_Ferlin C2 domain t 99.7 1.8E-16 4E-21 134.8 10.3 92 265-357 1-108 (151)
72 cd08406 C2B_Synaptotagmin-12 C 99.7 9.5E-17 2.1E-21 134.5 8.4 111 255-367 6-123 (136)
73 cd08407 C2B_Synaptotagmin-13 C 99.7 1.4E-16 3E-21 133.5 8.9 111 255-367 6-125 (138)
74 cd08691 C2_NEDL1-like C2 domai 99.7 1.1E-15 2.3E-20 128.1 14.0 115 265-387 2-136 (137)
75 cd04009 C2B_Munc13-like C2 dom 99.7 4.2E-16 9E-21 130.6 11.2 97 259-355 11-118 (133)
76 cd08383 C2A_RasGAP C2 domain ( 99.7 1.4E-15 2.9E-20 124.5 13.9 112 266-388 2-116 (117)
77 cd04021 C2_E3_ubiquitin_ligase 99.7 1.2E-15 2.5E-20 126.4 13.2 117 264-387 2-124 (125)
78 KOG1028 Ca2+-dependent phospho 99.7 6.9E-16 1.5E-20 152.4 13.0 135 255-395 158-297 (421)
79 cd08404 C2B_Synaptotagmin-4 C2 99.7 4.1E-16 8.9E-21 131.2 9.6 106 259-366 10-122 (136)
80 cd08405 C2B_Synaptotagmin-7 C2 99.7 3.1E-16 6.7E-21 131.9 8.5 110 256-367 7-123 (136)
81 cd08402 C2B_Synaptotagmin-1 C2 99.7 2.4E-16 5.1E-21 132.6 7.7 111 255-367 6-123 (136)
82 cd04011 C2B_Ferlin C2 domain s 99.7 1.2E-15 2.5E-20 123.8 11.2 99 263-366 3-109 (111)
83 cd08403 C2B_Synaptotagmin-3-5- 99.6 2.6E-16 5.7E-21 132.0 7.6 111 255-367 5-122 (134)
84 cd08409 C2B_Synaptotagmin-15 C 99.6 3.5E-16 7.5E-21 131.7 8.3 111 256-367 7-124 (137)
85 cd04048 C2A_Copine C2 domain f 99.6 9.9E-16 2.1E-20 126.0 9.7 97 270-366 6-113 (120)
86 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2E-15 4.4E-20 124.7 11.0 107 257-364 8-122 (123)
87 cd08692 C2B_Tac2-N C2 domain s 99.6 1.5E-15 3.2E-20 125.7 10.0 111 255-366 5-122 (135)
88 cd08408 C2B_Synaptotagmin-14_1 99.6 1.5E-15 3.3E-20 127.7 10.3 112 255-367 6-125 (138)
89 cd08410 C2B_Synaptotagmin-17 C 99.6 1.4E-15 3.1E-20 127.6 9.7 111 256-367 6-123 (135)
90 cd00276 C2B_Synaptotagmin C2 d 99.6 9.3E-16 2E-20 128.5 8.2 108 258-367 8-122 (134)
91 cd04026 C2_PKC_alpha_gamma C2 99.6 3.2E-15 7E-20 124.9 11.2 104 263-367 12-121 (131)
92 KOG0696 Serine/threonine prote 99.6 2.5E-16 5.5E-21 148.6 4.5 105 262-367 178-288 (683)
93 cd00275 C2_PLC_like C2 domain 99.6 1.5E-14 3.3E-19 120.1 13.9 115 265-388 3-126 (128)
94 cd08686 C2_ABR C2 domain in th 99.6 9.2E-15 2E-19 117.7 9.9 80 266-352 1-92 (118)
95 PLN03200 cellulose synthase-in 99.6 8.5E-15 1.8E-19 163.5 11.0 118 260-388 1976-2098(2102)
96 cd04047 C2B_Copine C2 domain s 99.6 2.9E-14 6.3E-19 115.3 10.3 88 270-358 6-103 (110)
97 PF00168 C2: C2 domain; Inter 99.5 1E-13 2.2E-18 106.0 8.7 82 266-347 1-85 (85)
98 KOG1011 Neurotransmitter relea 99.4 2E-13 4.3E-18 134.2 8.3 117 263-388 294-422 (1283)
99 KOG2059 Ras GTPase-activating 99.4 4.7E-13 1E-17 133.3 9.0 124 263-394 4-127 (800)
100 PLN02270 phospholipase D alpha 99.4 8.4E-12 1.8E-16 128.8 13.6 128 263-397 7-153 (808)
101 smart00239 C2 Protein kinase C 99.3 9.5E-12 2.1E-16 97.6 10.4 93 266-358 2-97 (101)
102 cd00030 C2 C2 domain. The C2 d 99.3 1.4E-11 3E-16 96.3 10.6 99 266-364 1-101 (102)
103 COG5038 Ca2+-dependent lipid-b 99.3 4.9E-12 1.1E-16 132.7 9.4 126 261-394 1037-1163(1227)
104 PF10296 DUF2404: Putative int 99.3 1.4E-11 3.1E-16 95.7 9.5 85 74-158 1-89 (91)
105 cd08374 C2F_Ferlin C2 domain s 99.3 2.2E-11 4.9E-16 100.8 10.1 92 266-357 2-125 (133)
106 KOG1028 Ca2+-dependent phospho 99.2 4.9E-11 1.1E-15 118.1 9.2 109 256-366 290-405 (421)
107 PLN02223 phosphoinositide phos 99.1 2.2E-10 4.7E-15 114.1 10.7 101 263-366 408-518 (537)
108 PLN02952 phosphoinositide phos 99.1 6.9E-10 1.5E-14 112.8 13.6 102 263-367 469-581 (599)
109 KOG1328 Synaptic vesicle prote 99.1 2.5E-11 5.3E-16 121.2 0.1 123 261-389 111-300 (1103)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.1 5.4E-10 1.2E-14 87.2 7.4 87 266-357 1-90 (109)
111 KOG1328 Synaptic vesicle prote 99.0 3E-10 6.4E-15 113.6 4.1 98 258-355 941-1049(1103)
112 PLN02230 phosphoinositide phos 99.0 2.9E-09 6.3E-14 108.1 10.0 95 263-357 468-573 (598)
113 PLN02352 phospholipase D epsil 98.9 7.5E-09 1.6E-13 107.0 13.0 120 263-397 9-135 (758)
114 PLN02228 Phosphoinositide phos 98.9 1.1E-08 2.5E-13 103.3 14.0 125 263-398 430-567 (567)
115 PLN02222 phosphoinositide phos 98.9 6.4E-09 1.4E-13 105.4 10.7 95 263-357 451-556 (581)
116 KOG0169 Phosphoinositide-speci 98.9 1.2E-08 2.6E-13 103.8 10.6 116 265-388 617-742 (746)
117 KOG2059 Ras GTPase-activating 98.8 8.5E-09 1.8E-13 103.4 6.9 125 265-392 132-276 (800)
118 KOG1264 Phospholipase C [Lipid 98.8 1.8E-08 4E-13 102.1 9.1 92 264-356 1065-1163(1267)
119 KOG1031 Predicted Ca2+-depende 98.6 7.2E-08 1.6E-12 94.7 8.2 118 263-388 2-134 (1169)
120 KOG1013 Synaptic vesicle prote 98.4 3.7E-08 8E-13 91.0 -0.6 138 254-393 83-230 (362)
121 KOG1326 Membrane-associated pr 98.4 1.6E-07 3.4E-12 97.7 3.7 91 262-352 611-703 (1105)
122 KOG0905 Phosphoinositide 3-kin 98.3 4E-07 8.7E-12 95.9 4.6 105 262-366 1522-1634(1639)
123 KOG1011 Neurotransmitter relea 98.2 9.2E-06 2E-10 81.1 10.5 106 262-368 1123-1238(1283)
124 KOG1013 Synaptic vesicle prote 98.1 3.3E-06 7.2E-11 78.3 5.3 89 261-349 230-325 (362)
125 KOG3532 Predicted protein kina 98.0 2.7E-05 5.8E-10 78.3 10.0 231 55-295 79-358 (1051)
126 PLN02964 phosphatidylserine de 97.9 1.3E-05 2.9E-10 82.7 6.2 90 262-358 52-142 (644)
127 KOG1327 Copine [Signal transdu 97.8 3.9E-05 8.4E-10 76.5 7.2 114 270-385 142-265 (529)
128 cd08683 C2_C2cd3 C2 domain fou 97.7 7.7E-05 1.7E-09 60.4 5.3 99 266-364 1-142 (143)
129 KOG1326 Membrane-associated pr 97.2 7.2E-05 1.6E-09 78.5 -0.3 102 262-365 204-315 (1105)
130 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00056 1.2E-08 51.5 4.1 95 267-363 2-101 (103)
131 KOG2060 Rab3 effector RIM1 and 96.8 0.00082 1.8E-08 63.8 3.0 107 261-368 266-380 (405)
132 KOG3837 Uncharacterized conser 96.8 0.0012 2.7E-08 63.2 4.1 120 262-388 365-501 (523)
133 PF15627 CEP76-C2: CEP76 C2 do 96.6 0.036 7.8E-07 47.0 11.3 127 262-395 7-153 (156)
134 cd08398 C2_PI3K_class_I_alpha 96.4 0.091 2E-06 45.0 12.3 88 263-354 7-107 (158)
135 KOG1327 Copine [Signal transdu 95.8 0.016 3.4E-07 58.2 5.8 84 298-388 42-130 (529)
136 KOG1265 Phospholipase C [Lipid 95.8 0.019 4.2E-07 60.1 6.5 87 263-356 702-797 (1189)
137 PF10358 NT-C2: N-terminal C2 95.7 0.41 8.8E-06 40.0 13.1 120 263-396 6-139 (143)
138 KOG1452 Predicted Rho GTPase-a 95.5 0.027 5.9E-07 52.4 5.7 81 261-343 48-131 (442)
139 PF12416 DUF3668: Cep120 prote 95.5 0.21 4.5E-06 48.2 11.8 115 266-388 2-130 (340)
140 cd08693 C2_PI3K_class_I_beta_d 94.2 0.35 7.5E-06 42.2 8.9 89 264-354 8-121 (173)
141 cd08687 C2_PKN-like C2 domain 94.0 0.74 1.6E-05 35.2 9.0 85 283-388 7-91 (98)
142 cd08380 C2_PI3K_like C2 domain 93.5 0.51 1.1E-05 40.3 8.6 90 264-354 8-108 (156)
143 cd08397 C2_PI3K_class_III C2 d 92.2 0.69 1.5E-05 39.7 7.5 71 283-353 28-107 (159)
144 cd04012 C2A_PI3K_class_II C2 d 92.1 0.68 1.5E-05 40.2 7.5 92 263-354 7-120 (171)
145 PF15625 CC2D2AN-C2: CC2D2A N- 90.2 6 0.00013 34.2 11.5 72 283-355 35-108 (168)
146 KOG1329 Phospholipase D1 [Lipi 89.8 0.86 1.9E-05 48.6 6.9 105 285-396 138-244 (887)
147 PF00792 PI3K_C2: Phosphoinosi 89.4 3.5 7.6E-05 34.5 9.2 55 300-354 23-86 (142)
148 cd08399 C2_PI3K_class_I_gamma 89.0 3.8 8.3E-05 35.8 9.4 90 264-354 10-123 (178)
149 PF14429 DOCK-C2: C2 domain in 88.7 2.4 5.1E-05 37.2 8.1 56 297-352 59-120 (184)
150 cd08695 C2_Dock-B C2 domains f 87.6 5.7 0.00012 35.0 9.5 56 297-352 53-113 (189)
151 cd08694 C2_Dock-A C2 domains f 87.3 4.7 0.0001 35.7 8.8 55 297-351 53-114 (196)
152 PF11618 DUF3250: Protein of u 85.7 4.2 9.2E-05 32.3 7.1 92 289-388 3-103 (107)
153 smart00142 PI3K_C2 Phosphoinos 82.4 7.3 0.00016 30.4 7.2 71 266-336 13-91 (100)
154 PF01102 Glycophorin_A: Glycop 78.0 2.4 5.3E-05 34.5 3.1 16 4-19 66-81 (122)
155 KOG2238 Uncharacterized conser 74.0 1.1 2.4E-05 47.0 0.2 92 67-158 333-428 (795)
156 PF01102 Glycophorin_A: Glycop 72.5 4.6 9.9E-05 32.9 3.4 23 2-24 68-90 (122)
157 KOG0694 Serine/threonine prote 71.6 1.4 3.1E-05 45.7 0.3 69 284-354 27-96 (694)
158 cd08679 C2_DOCK180_related C2 70.9 12 0.00026 32.6 6.0 53 299-352 55-115 (178)
159 cd08696 C2_Dock-C C2 domains f 67.4 16 0.00035 31.9 6.0 56 297-352 54-118 (179)
160 PTZ00447 apical membrane antig 67.1 84 0.0018 30.3 10.8 108 265-387 59-170 (508)
161 PF06305 DUF1049: Protein of u 63.7 12 0.00026 26.7 3.8 13 6-18 27-39 (68)
162 PF01034 Syndecan: Syndecan do 58.4 3.2 6.9E-05 29.5 -0.1 23 2-24 13-35 (64)
163 cd08697 C2_Dock-D C2 domains f 57.2 34 0.00074 30.1 6.1 56 297-352 56-123 (185)
164 KOG4269 Rac GTPase-activating 56.2 5.1 0.00011 42.9 1.0 85 262-353 757-856 (1112)
165 PF12732 YtxH: YtxH-like prote 55.0 13 0.00028 27.2 2.8 19 3-21 1-19 (74)
166 PF06667 PspB: Phage shock pro 52.9 42 0.00092 24.8 5.1 14 48-61 59-72 (75)
167 PF15102 TMEM154: TMEM154 prot 51.8 9 0.0002 32.1 1.6 6 71-76 132-137 (146)
168 TIGR02976 phageshock_pspB phag 51.4 43 0.00092 24.8 4.9 14 48-61 59-72 (75)
169 PF06305 DUF1049: Protein of u 49.7 41 0.00089 23.8 4.7 17 3-19 28-44 (68)
170 PRK09458 pspB phage shock prot 48.7 47 0.001 24.5 4.7 13 49-61 60-72 (75)
171 PF02529 PetG: Cytochrome B6-F 45.4 46 0.00099 20.8 3.5 11 3-13 5-15 (37)
172 PRK00665 petG cytochrome b6-f 44.8 39 0.00085 21.0 3.1 10 3-12 5-14 (37)
173 PF06295 DUF1043: Protein of u 44.8 21 0.00046 29.3 2.8 17 4-20 3-19 (128)
174 PF12297 EVC2_like: Ellis van 44.7 27 0.00059 34.5 3.8 14 63-76 112-125 (429)
175 CHL00008 petG cytochrome b6/f 43.8 40 0.00087 20.9 3.1 10 3-12 5-14 (37)
176 PF07162 B9-C2: Ciliary basal 41.4 2.3E+02 0.0049 24.3 10.5 79 269-353 7-104 (168)
177 PF15179 Myc_target_1: Myc tar 38.0 29 0.00063 30.1 2.6 22 3-24 25-46 (197)
178 PF14851 FAM176: FAM176 family 35.9 31 0.00068 29.3 2.5 18 3-20 26-43 (153)
179 PF02439 Adeno_E3_CR2: Adenovi 35.6 67 0.0014 20.3 3.2 13 2-14 7-19 (38)
180 COG2851 CitM H+/citrate sympor 34.6 63 0.0014 31.7 4.5 31 6-36 177-207 (433)
181 TIGR01149 mtrG N5-methyltetrah 34.4 43 0.00092 24.2 2.5 12 2-13 48-59 (70)
182 PRK01026 tetrahydromethanopter 33.7 40 0.00087 24.9 2.4 17 2-18 51-67 (77)
183 PF04210 MtrG: Tetrahydrometha 33.2 43 0.00092 24.2 2.4 15 2-16 48-62 (70)
184 PF10409 PTEN_C2: C2 domain of 33.2 2.6E+02 0.0057 22.6 10.4 90 265-354 5-98 (134)
185 COG2976 Uncharacterized protei 32.2 74 0.0016 28.3 4.2 22 6-27 24-45 (207)
186 PF12273 RCR: Chitin synthesis 30.5 60 0.0013 26.6 3.3 16 7-22 3-18 (130)
187 PF14186 Aida_C2: Cytoskeletal 30.3 3.2E+02 0.007 23.0 7.6 91 263-356 12-115 (147)
188 COG3887 Predicted signaling pr 30.3 1.4E+02 0.0029 31.3 6.3 26 57-82 83-109 (655)
189 PF03672 UPF0154: Uncharacteri 29.6 87 0.0019 22.4 3.4 18 2-19 2-19 (64)
190 PF13373 DUF2407_C: DUF2407 C- 29.3 48 0.001 27.7 2.5 22 3-24 92-113 (140)
191 PF14909 SPATA6: Spermatogenes 28.5 3.5E+02 0.0076 22.6 9.1 85 266-354 4-100 (140)
192 PF11240 DUF3042: Protein of u 27.8 92 0.002 21.4 3.2 23 2-24 3-25 (54)
193 PF14924 DUF4497: Protein of u 27.7 1.5E+02 0.0033 23.4 5.2 60 325-391 28-105 (112)
194 COG4064 MtrG Tetrahydromethano 27.4 74 0.0016 22.9 2.8 14 2-15 51-64 (75)
195 PRK11677 hypothetical protein; 25.2 77 0.0017 26.3 3.0 16 4-19 7-22 (134)
196 PF04971 Lysis_S: Lysis protei 24.8 98 0.0021 22.3 3.0 11 6-16 37-47 (68)
197 KOG4092 Mitochondrial F1F0-ATP 24.7 41 0.00089 25.9 1.2 44 56-99 37-80 (108)
198 PF01060 DUF290: Transthyretin 24.2 1.5E+02 0.0033 21.9 4.2 25 325-349 11-36 (80)
199 PF04478 Mid2: Mid2 like cell 23.7 14 0.00029 31.3 -1.7 14 4-17 51-64 (154)
200 PRK13275 mtrF tetrahydromethan 23.5 93 0.002 22.4 2.7 15 5-19 43-57 (67)
201 PTZ00382 Variant-specific surf 23.1 22 0.00047 27.7 -0.6 13 3-15 67-79 (96)
202 TIGR03165 F1F0_chp_2 F1/F0 ATP 22.9 91 0.002 23.5 2.8 25 2-26 6-30 (83)
203 PF15145 DUF4577: Domain of un 22.9 2.4E+02 0.0052 22.5 5.1 23 3-25 63-85 (128)
204 PF14023 DUF4239: Protein of u 22.5 4.3E+02 0.0094 23.2 7.7 22 4-25 4-25 (209)
205 PF13908 Shisa: Wnt and FGF in 22.1 45 0.00097 29.0 1.1 21 2-22 79-99 (179)
206 PF06365 CD34_antigen: CD34/Po 22.1 68 0.0015 28.6 2.3 24 1-24 99-125 (202)
207 PF05393 Hum_adeno_E3A: Human 22.0 1.1E+02 0.0023 23.3 2.9 8 36-43 63-70 (94)
208 PF09472 MtrF: Tetrahydrometha 21.2 1.4E+02 0.003 21.3 3.2 16 4-19 42-57 (64)
209 cd01228 PH_BCR-related BCR (br 20.9 47 0.001 25.7 0.9 17 62-78 76-92 (96)
210 PF07178 TraL: TraL protein; 20.9 1.1E+02 0.0024 23.5 3.0 16 9-24 41-56 (95)
211 PRK13707 conjugal transfer pil 20.3 1.1E+02 0.0024 24.0 2.9 16 9-24 47-62 (101)
212 PF15176 LRR19-TM: Leucine-ric 20.1 1.4E+02 0.0029 23.4 3.2 17 3-19 19-35 (102)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.5e-51 Score=423.22 Aligned_cols=318 Identities=31% Similarity=0.505 Sum_probs=282.3
Q ss_pred CCCcchHHHHHHHHhHhhhHHHHHHHHHHHhHHHHHHhcCCCCcceEEEeEEecCCCCCeeeeEEEEE-cCCCeEEEEEE
Q 015915 65 PVYEQVKWLNKELSKLWPFVADAAELVIKESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQS-LKQGQITMDID 143 (398)
Q Consensus 65 ~d~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~l~~~l~~~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~-~~~~~~~ld~~ 143 (398)
.|+|++||||.+|+++||.+++.+++.+.+++|+.|.++.|+||+.+.+.+||||++||||.+||.|+ .+.|.+.||++
T Consensus 218 nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 218 NDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred cchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 46899999999999999999999999999999999999999999999999999999999999999876 57789999999
Q ss_pred EEEeC---------------CCcEEEEEEee--ee-eeEEEEEEEEEEEEEEEEEEEecCCCCccceEEEEeecCCcceE
Q 015915 144 FRWGG---------------DPSIILGVEAA--MV-ASIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRI 205 (398)
Q Consensus 144 ~~~~~---------------~~~i~l~~~~~--~~-~~~~v~v~~l~~~g~~Rv~~~l~~~~P~~~~~~vsf~~~P~p~i 205 (398)
++|+. ++.|.|.++.+ ++ .++||.|+++.|.|++|+++.|++..|++..++++|++. |+|
T Consensus 298 ~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~--Pe~ 375 (1227)
T COG5038 298 FSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEV--PEF 375 (1227)
T ss_pred eccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecC--cce
Confidence 99985 34567776664 33 789999999999999999999999999999999999997 899
Q ss_pred EEEEeecCc-----CccccccHHHHHHHHHHHHHhhhcCCCCeeeeecCCCCcCccccccCCCcEEEEEEeeeeecccCc
Q 015915 206 DYTLKAVGG-----SLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNME 280 (398)
Q Consensus 206 d~~~~~~g~-----~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~ipl~~~~~d~~~~~~~~~g~L~V~V~~a~~L~~~d 280 (398)
||.++++|+ |+++||||+.||+++|..+++.++++|+.+++++...-... ...+.|++.|+|.+|++|...+
T Consensus 376 df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~---s~~aIGVv~vkI~sa~~lk~~d 452 (1227)
T COG5038 376 DFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD---SGTAIGVVEVKIKSAEGLKKSD 452 (1227)
T ss_pred eEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc---cCCeeEEEEEEEeeccCccccc
Confidence 999999984 57899999999999999999999999999999986321111 2357899999999999999988
Q ss_pred --CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECccccccc
Q 015915 281 --MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADT 357 (398)
Q Consensus 281 --~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~ 357 (398)
..+..|||+++........||+++++++||+|||+|++.+... ++.|.++|||.+ ..+|+.+|++.++|..+....
T Consensus 453 ~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 453 STINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred ccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhcc
Confidence 5799999999998765567999999999999999999999864 679999999987 999999999999999998876
Q ss_pred ccce-EEecccccccccccCCCcccEEEEEEeeeeeecccCC
Q 015915 358 PKEA-ELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLFK 398 (398)
Q Consensus 358 ~~~~-~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~~~ 398 (398)
.... ...+ ..+.+..|+++..+. |+|+..+|
T Consensus 532 ~~~ne~~e~--------~~~~k~vGrL~yDl~--ffp~~e~k 563 (1227)
T COG5038 532 VKKNELYEF--------LRNTKNVGRLTYDLR--FFPVIEDK 563 (1227)
T ss_pred ccccceeee--------eccCccceEEEEeee--eecccCCc
Confidence 6543 2222 266788999999999 99998876
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.90 E-value=6.8e-23 Score=167.85 Aligned_cols=118 Identities=21% Similarity=0.379 Sum_probs=102.7
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD 340 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d 340 (398)
.|+|+|+|++|++++..+ .|++||||++.+++ .+++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+| +++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~-~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH-AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC-EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 489999999999998877 79999999999988 5779999865 89999999999999764 468999999999 8999
Q ss_pred ceeEEEEEECc-ccccccccceEEecccccccccccCCCcccEEEEEEeeee
Q 015915 341 KRLGIVKLPLI-DLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASK 391 (398)
Q Consensus 341 ~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y 391 (398)
++||++.+++. .+..+...+.|++|.+. ...+..|+|+++++ |
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~--y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFS--Y 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEe--C
Confidence 99999999996 57777678899999652 33457899999999 7
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.86 E-value=2.9e-21 Score=160.40 Aligned_cols=118 Identities=29% Similarity=0.477 Sum_probs=101.6
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeec-----CCCCeEEEEEEEcc-CCC
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED-----KETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~-----~~~~~L~v~v~d~d-~~~ 339 (398)
++|+|++|+||+.++..|.+||||++++++ .+++|+++++++||+|||+|.|.+.. .....|.++|||++ .++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 579999999999999889999999999987 67899999999999999999999976 35678999999999 889
Q ss_pred CceeEEEEEECcccc--cccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 340 DKRLGIVKLPLIDLE--ADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 340 d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
|++||++.++++++. .+.....|++|.... ....+.+|+|+++++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~----~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP----GKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCC----CCCccccceEEEEeC
Confidence 999999999999987 455677999997421 133456899999874
No 4
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.86 E-value=4.9e-21 Score=157.92 Aligned_cols=119 Identities=32% Similarity=0.458 Sum_probs=106.8
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG 344 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG 344 (398)
|+|+|++|++|+..|..|.+||||++++++...++|+++.++.||.|||+|.|.+.+. .+.+.++|||+| .++|++||
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceE
Confidence 7899999999999998899999999999876678999999999999999999998764 578999999999 88999999
Q ss_pred EEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 345 IVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 345 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
.+.++++++..+...+.|++|... .+.+..|+|++.++ |.|
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~--~~~ 121 (121)
T cd04042 81 SAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVT--LTP 121 (121)
T ss_pred EEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEE--ECC
Confidence 999999999988888899998642 33467899999999 877
No 5
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.86 E-value=6e-21 Score=156.62 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=101.3
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK 341 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~ 341 (398)
|.|+|+|++|++|++.+..+.+||||++++++ .+++|+++. ++.||.|||+|.|.+.....+.|.++|||++ .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence 78999999999999999999999999999987 678888875 5799999999999998766678999999999 55 99
Q ss_pred eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+||++.++++++..+.....|++|.. +++..|+|+++++
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~ 117 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELT 117 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEE
Confidence 99999999999877767788998853 3457899999998
No 6
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3.1e-20 Score=153.11 Aligned_cols=115 Identities=28% Similarity=0.403 Sum_probs=99.1
Q ss_pred EEEEEEeeeee---cccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C---
Q 015915 265 KVAVTIVKANN---LKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I--- 337 (398)
Q Consensus 265 ~L~V~V~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~--- 337 (398)
.|+|+|++|++ |+.+|..|.+||||++++++ ++.||+++++++||+|||+|.|.+.+. ...|.++|||++ .
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccc
Confidence 38999999999 88899999999999999987 578999999999999999999999775 458999999999 5
Q ss_pred ---CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEE
Q 015915 338 ---GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITV 385 (398)
Q Consensus 338 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l 385 (398)
.+|++||++.++++++..+...+.|++|... .....+..|+|+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~----~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL----NPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC----CCCCccCCcEEEe
Confidence 3899999999999999988888899998642 1233556788764
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=6.3e-20 Score=150.07 Aligned_cols=114 Identities=32% Similarity=0.465 Sum_probs=102.8
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL 343 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l 343 (398)
+++|+|++|++|+..+..+.+||||++++++ .+.+|+++++|.||.|||+|.|.+.+...+.|.++|||++ .++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN-EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC-EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999987 6789999999999999999999998766789999999999 8899999
Q ss_pred EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915 344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH 392 (398)
Q Consensus 344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~ 392 (398)
|++.++++++..+...+.|++|.+ ..|+|++.+. |.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~--~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLT--LT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEE--ec
Confidence 999999999998888889998842 2599999988 74
No 8
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.83 E-value=1.3e-19 Score=150.37 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=102.3
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK 341 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~ 341 (398)
...|+|+|++|+||+.. +.+||||++++++....+|++. ++.||.|||+|.|.+.......+++.|||++ .++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999875 4789999999987556788874 6899999999999876554468999999999 89999
Q ss_pred eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
+||.+.++++++..+...+.|+.|.+.. ..+.+..|+|+++++ |.+
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~--~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRAR--YSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEE--EEc
Confidence 9999999999999888888999997531 124566899999999 976
No 9
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=5.3e-20 Score=153.03 Aligned_cols=120 Identities=24% Similarity=0.305 Sum_probs=102.1
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC---CCeEEEEEEEcc-CC-C
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE---TQSLIFEVFDKD-IG-Q 339 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~---~~~L~v~v~d~d-~~-~ 339 (398)
.|+|+|++|++|...+..|.+||||++++++ .+++|++++++.||.|||+|.|.+.++. ...|.++|||++ .+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 4899999999999999889999999999987 5789999999999999999999987532 357999999998 65 8
Q ss_pred CceeEEEEEECcccc-cccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915 340 DKRLGIVKLPLIDLE-ADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH 392 (398)
Q Consensus 340 d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~ 392 (398)
|++||++.++++++. .+.....|++|.+. ...++.+|+|.+++. +.
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~--~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKR-----GLFSRVRGEIGLKVY--IT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeC-----CCCCCccEEEEEEEE--Ec
Confidence 999999999999998 45556789998642 123457999999998 64
No 10
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=156.11 Aligned_cols=98 Identities=33% Similarity=0.548 Sum_probs=89.8
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~ 339 (398)
...|.|+|+|.+|.+|..+|+.++|||||++.+++ ++.+|+++++++||+|||.|.|.+.++ +..|++.|||+| ++.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~-q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN-QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC-eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 35799999999999999999889999999999998 689999999999999999999999985 679999999999 999
Q ss_pred CceeEEEEEECcccccccccc
Q 015915 340 DKRLGIVKLPLIDLEADTPKE 360 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~~~~ 360 (398)
||+||.|+|++..+.......
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred ccccceeeeccHHHHHHhhhh
Confidence 999999999999987654433
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=8.4e-20 Score=150.32 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=101.4
Q ss_pred EEEEEeeeeecccCc-CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915 266 VAVTIVKANNLKNME-MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL 343 (398)
Q Consensus 266 L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l 343 (398)
|+|+|.+|+||+..+ ..|.+||||.++++....++|+++++|+||.|||+|.|.+.+. ...|.+.|||++ .++|+++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 679999999999874 4578999999999875578999999999999999999999753 468999999999 8899999
Q ss_pred EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
|.+.++++++..+...+.|++|.+. ...++.+|+|+++++
T Consensus 81 G~~~i~l~~l~~~~~~~~w~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYYGKDTWFPLQPV-----DADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCCCcEeeEEEEcc-----CCCCcccEEEEEEEE
Confidence 9999999999887778899999753 133446899999987
No 12
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.83 E-value=9.7e-20 Score=150.60 Aligned_cols=121 Identities=27% Similarity=0.450 Sum_probs=105.1
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL 343 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l 343 (398)
.|+|+|++|++|+.++..+.+||||++++++ ...+|++++++.||.|||+|.|.+.......|.|+|||++ .+++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 3899999999999999888999999999986 5789999999999999999999998766678999999999 8899999
Q ss_pred EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEE
Q 015915 344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387 (398)
Q Consensus 344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l 387 (398)
|++.++++++..+...+.|+.|.+.. ..+...++..|.|++.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~-~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDP-RAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCC-CCCccccCceEEEEEEe
Confidence 99999999998777778899987643 22334567789999876
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.83 E-value=1.3e-19 Score=152.20 Aligned_cols=119 Identities=34% Similarity=0.551 Sum_probs=100.9
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~ 339 (398)
...|.|+|+|++|++|++.+..|.+||||+++++. ..++|+++++|.||.|||+|.|.+.+...+.+.++|||+| .++
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~-~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS-QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC-EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 56899999999999999999899999999999986 6799999999999999999999998766778999999999 889
Q ss_pred CceeEEEEEECccccccc--ccceE-EecccccccccccCCCcccEEEEEEe
Q 015915 340 DKRLGIVKLPLIDLEADT--PKEAE-LRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~--~~~~~-~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
|++||++.+++.++.... ....+ ..+ ...++.+|+|++++.
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~--------~~~~~~~g~i~l~~~ 134 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRL--------LLHEVPTGEVVVKLD 134 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEe--------ccccccceeEEEEEE
Confidence 999999999999998622 12211 111 123567899999998
No 14
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=1.1e-19 Score=151.14 Aligned_cols=121 Identities=28% Similarity=0.410 Sum_probs=103.8
Q ss_pred cEEEEEEeeeeecccCcC--CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915 264 GKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD 340 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d 340 (398)
|+|+|+|++|++|+..+. .+.+||||+++++. .+.+|++++++.||.|||+|.|.+.+...+.|.++|||++ .++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~-~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA-QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC-EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999999999888 88999999999986 5789999999999999999999998766789999999999 8899
Q ss_pred ceeEEEEEECccccc---ccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 341 KRLGIVKLPLIDLEA---DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 341 ~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
++||++.++++++.. ......|+.|.+.. ...+...+|+|+++++
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~---~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTR---PGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcc---cCccccccceEEEEEE
Confidence 999999999999873 23357899886531 1234557999999987
No 15
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.83 E-value=1.5e-19 Score=155.65 Aligned_cols=123 Identities=33% Similarity=0.463 Sum_probs=104.1
Q ss_pred CcEEEEEEeeeeecccCc------------------------------CCCCCCcEEEEEEcceeeEeccccCCCCCcee
Q 015915 263 QGKVAVTIVKANNLKNME------------------------------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW 312 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~W 312 (398)
.|+|+|+|.+|++|+++| ..|.+||||++++++....||++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 699999999999999987 34678999999998755679999999999999
Q ss_pred ccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915 313 NQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH 392 (398)
Q Consensus 313 ne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~ 392 (398)
||+|.|.+.+. .+.|.++|||+|..++++||++.++++++..+...+.|++|.... .+..+..|+|+++++ |+
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----~~~~~~~~~l~v~~~--f~ 158 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----GKPPKPGAKIRVSLQ--FT 158 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----CCCCCCCCEEEEEEE--EC
Confidence 99999998764 568999999999335689999999999999888888999987531 123345789999999 84
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.4e-19 Score=154.24 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=104.5
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
.|+|+|++|++|+.++..|.+||||++++++ +..+|+++.+ ++||.|||+|.|.+.++....+.++|||++ .++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence 3799999999999999999999999999998 6889998876 699999999999997766678999999999 789999
Q ss_pred eEEEEEECcccccc----cccceEEeccccccc-ccccCCCcccEEEEEEeeeeee
Q 015915 343 LGIVKLPLIDLEAD----TPKEAELRLLPSLDM-LKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 343 lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~-~~~~~~~~~G~I~l~l~~~y~P 393 (398)
||++.++++++..+ ...+.|++|...... ...+..+.+|+|+++++ |.+
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~--~~~ 133 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLC--LDG 133 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEE--ecC
Confidence 99999999998653 335789999764210 01133466899999999 754
No 17
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=7.7e-20 Score=147.61 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=91.5
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI 329 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~ 329 (398)
++..|.+..|.|+|+|++|++|+ . .|.+||||++++.+ ..+.+|+++++|+||.|||+|.|.+.. .....|.
T Consensus 5 fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 5 YSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLT 81 (118)
T ss_pred EEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEE
Confidence 45567788999999999999998 3 46799999999964 246799999999999999999999864 3456899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEe
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELR 364 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 364 (398)
++|||+| ++++++||++.++++++..+.+.++|..
T Consensus 82 ~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 82 LTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 9999999 9999999999999999877666667754
No 18
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=1.6e-19 Score=149.36 Aligned_cols=120 Identities=29% Similarity=0.426 Sum_probs=101.7
Q ss_pred CcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcc-eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915 263 QGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~ 339 (398)
.|.|+|+|++|++|+..+ ..+.+||||++++++ ...++|++++++.||.|||+|.|.+.. ..+.|.++|||++ .++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 388999999999999765 346799999999987 468999999999999999999999874 5779999999999 889
Q ss_pred CceeEEEEEECcccccccccc-eEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 340 DKRLGIVKLPLIDLEADTPKE-AELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
|++||.+.+++.++....... .+..+. .+++.+|+|+++++ |.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~--~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLR--FFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEE--eCC
Confidence 999999999999998766553 233221 44567899999999 987
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.82 E-value=2.2e-19 Score=149.13 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=103.4
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcc-eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCcee
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP-LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRL 343 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~l 343 (398)
|.|+|++|++|+. ..|.+||||+++++. ..+++|+++++|.||.|||+|.|.+.. ..+.|.++|||++ .++|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999987 678999999999974 356899999999999999999999864 4678999999999 8899999
Q ss_pred EEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915 344 GIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395 (398)
Q Consensus 344 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~ 395 (398)
|++.++++++..+.....|++|.+.. ..+....|+|++++. |.+-.
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~----~~~~~~~G~l~l~~~--~~~~~ 123 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRP----YEGDSVSGSITVEFL--FMEPA 123 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCC----CCCCCcceEEEEEEE--Eeccc
Confidence 99999999999877778899886531 124567999999999 97654
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=1.9e-19 Score=147.20 Aligned_cols=103 Identities=30% Similarity=0.357 Sum_probs=89.4
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEc----c--eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEEEEc
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIK----P--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVFDK 335 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~----~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v~d~ 335 (398)
.|+|+|++|++|+..+ .|.+||||++++. + .++++|+++++|+||+|||+|.|.+.. +....|.+.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999988 4999999999973 1 235689999999999999999999974 2345799999999
Q ss_pred c-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915 336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368 (398)
Q Consensus 336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 368 (398)
| .++|++||++.++++++..++....|++|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 9 78899999999999999998888899998754
No 21
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=2.6e-19 Score=147.10 Aligned_cols=112 Identities=25% Similarity=0.471 Sum_probs=98.8
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
|+|+|++|++|++.+..+.+||||++++.+ ..+++|+++++|.||.|||+|.|.+.....+.|.|+|||+| . +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999863 35689999999999999999999997665668999999999 7 9999
Q ss_pred eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
||++.++++++..+.....|++|.+ .+.|++++++.
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~----------~~~g~l~~~~~ 116 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP----------QGKEELEVEFL 116 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC----------CCCceEEEEEE
Confidence 9999999999998888889998742 24788888876
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=4e-19 Score=146.26 Aligned_cols=112 Identities=28% Similarity=0.389 Sum_probs=96.8
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGI 345 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~ 345 (398)
|+|+|++|++|+.. .+||||++++++ .+.+|++++++.||+|||+|.|.+.+.....|.++|||+|..++++||+
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 78999999999877 789999999987 6889999999999999999999987766789999999999338999999
Q ss_pred EEEECccccccc-----ccceEEecccccccccccCCCcccEEEEEEe
Q 015915 346 VKLPLIDLEADT-----PKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 346 ~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+.++++++.... ....|++|.+. .+.+.+|+|++++.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~------~~~~~~G~i~l~~~ 118 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDK------KGGRVGGELMLAVW 118 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCC------CCCccceEEEEEEE
Confidence 999999987533 24589998753 33567899999998
No 23
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=5.5e-19 Score=145.47 Aligned_cols=113 Identities=30% Similarity=0.526 Sum_probs=100.6
Q ss_pred cEEEEEEeeeeecccCcC------CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-
Q 015915 264 GKVAVTIVKANNLKNMEM------IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD- 336 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d- 336 (398)
|+|+|+|++|++|+..+. .|.+||||++++++ ..++|++++++.||.|||+|.|.+.+...+.|.++|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 789999999999998874 36899999999987 6899999999999999999999998766789999999999
Q ss_pred CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
. +|++||++.++++++..++..+.|++|.. ..+|+|+++++
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----------VKSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcC----------CCCceEEEEEe
Confidence 6 99999999999999988777789998742 25799999887
No 24
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.81 E-value=9.6e-19 Score=145.20 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=103.3
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCc
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDK 341 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~ 341 (398)
|+++|+|+|++|++|...+..|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ...|.++|||++..+|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 4789999999999999999889999999999987 578999999999999999999988764 67899999999944589
Q ss_pred eeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915 342 RLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF 394 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~ 394 (398)
+||.+.+++++.... ...+++|... ....+++..|+|.+++. +.|-
T Consensus 79 ~lG~~~~~l~~~~~~--~~~~~~l~~~---~~~~~~~~~G~i~~~~~--~~~~ 124 (126)
T cd04046 79 FLGQATLSADPNDSQ--TLRTLPLRKR---GRDAAGEVPGTISVKVT--SSDD 124 (126)
T ss_pred ceEEEEEecccCCCc--CceEEEcccC---CCCCCCCCCCEEEEEEE--Eccc
Confidence 999999999886533 3455666432 12366778999999999 7763
No 25
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=3.6e-19 Score=146.79 Aligned_cols=102 Identities=28% Similarity=0.406 Sum_probs=90.9
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEe-e--cCCCCeEEEEEEEc
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIA-E--DKETQSLIFEVFDK 335 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v-~--~~~~~~L~v~v~d~ 335 (398)
.+.|+|+|++|++|+.++ .+.+||||++++.+ ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 789999999999999999 89999999999974 2468999999999999999999987 2 33567899999999
Q ss_pred c-CCCCceeEEEEEECcccccccccceEEec
Q 015915 336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
| .+++++||++.++++++..+.....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9 88999999999999999987777889876
No 26
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.79 E-value=1.9e-18 Score=141.92 Aligned_cols=116 Identities=27% Similarity=0.492 Sum_probs=100.5
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
|.|+|+|++|++|+..+..+.+||||++++++ ...+|++++++.||.|||+|.|.+.+. ...+.++|||++ .+++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCce
Confidence 78999999999999999889999999999987 468999999999999999999998763 578999999999 789999
Q ss_pred eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
||++.+++.++..+. ..|+.|... ....+..|+|.+++.
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~-----~~~~~~~G~i~l~~~ 117 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDK-----KLRTRAKGSILLEMD 117 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECccc-----CCCCceeeEEEEEEE
Confidence 999999999987543 568887542 234557999999987
No 27
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.79 E-value=1.4e-18 Score=143.26 Aligned_cols=117 Identities=25% Similarity=0.445 Sum_probs=100.1
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG 344 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG 344 (398)
|.|+|++|++|++++..|.+||||++++++....+|+++++++||.|||.|.|.+.+ ..+.|.++|||++ .++|+++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence 789999999999999999999999999987556799999999999999999999865 3478999999999 88999999
Q ss_pred EEEEECccccccc-ccceEEecccccccccccCCCcccEEEEEEe
Q 015915 345 IVKLPLIDLEADT-PKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 345 ~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
++.++++++.... ..+.|++|.+. ..++...|+|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 9999999887533 36789998642 234456899998875
No 28
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.2e-18 Score=145.94 Aligned_cols=120 Identities=28% Similarity=0.529 Sum_probs=101.0
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcce------eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I 337 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~ 337 (398)
.|+|+|++|++|+..+..|.+||||++++.+. .+.+|+++++|.||.|||+|.|.+... ...|.++|||++ .
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 37999999999999998899999999999753 256899999999999999999998753 568999999999 8
Q ss_pred CCCceeEEEEEECcccccccc------cceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915 338 GQDKRLGIVKLPLIDLEADTP------KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH 392 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~ 392 (398)
++|++||++.++++++..+.. ...|++|.+. ...++..|+|+++++ |.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~--~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMA--YL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEe--eC
Confidence 899999999999999886543 3478887642 234567999999999 73
No 29
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.4e-18 Score=146.68 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=93.4
Q ss_pred CCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE-Ec
Q 015915 262 PQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF-DK 335 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~-d~ 335 (398)
..|.|+|+|++|+||...+ ..|.+||||++++.+. .++||+++++|+||+|||+|.|.+. ..+..|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 4789999999999999864 5688999999999652 3689999999999999999999998 56789999999 57
Q ss_pred c-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915 336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368 (398)
Q Consensus 336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 368 (398)
+ .+++++||++.++|+++..+.....|++|.+.
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 7 88999999999999999777777899999764
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.79 E-value=1e-18 Score=144.81 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=94.9
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L 328 (398)
+..|.+..+.|+|+|++|+||+.++.. |.+||||++++.+ ..+++|+++++++||.|||+|.|.+.. .....|
T Consensus 7 sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L 86 (125)
T cd08393 7 ALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVL 86 (125)
T ss_pred EEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEE
Confidence 334556778999999999999999875 8999999999964 235799999999999999999999863 345689
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.++|||+| .+++++||++.++|.++........|++|
T Consensus 87 ~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 87 NLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999 89999999999999999877777889876
No 31
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=1e-18 Score=144.69 Aligned_cols=111 Identities=23% Similarity=0.427 Sum_probs=97.2
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFE 331 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~ 331 (398)
+..|.++.|.|+|+|++|++|+.++..|.+||||++++.+ ...++|++++++.||.|||+|.|.+... ....|.++
T Consensus 8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 3345567899999999999999999889999999999953 3568999999999999999999998643 35689999
Q ss_pred EEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
|||++ .++|++||++.++++++..++..+.|++|.
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99999 889999999999999998877888999874
No 32
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.78 E-value=1.5e-18 Score=147.27 Aligned_cols=121 Identities=26% Similarity=0.375 Sum_probs=96.7
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEee---------------cCCC
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAE---------------DKET 325 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~---------------~~~~ 325 (398)
.|+|+|++|++|.. ..|.+||||++++.+. .+++|+++++|+||.|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37999999999988 4689999999999752 4679999999999999999999985 1223
Q ss_pred CeEEEEEEEcc-CCCCceeEEEEEECcccccc-cccceEEeccccccccc-----ccCCCcccEEEEEE
Q 015915 326 QSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD-TPKEAELRLLPSLDMLK-----IKDKKDRGSITVKV 387 (398)
Q Consensus 326 ~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~-----~~~~~~~G~I~l~l 387 (398)
..|.+.|||++ .++|++||++.+++.++..+ .....|++|.+..+... ..+....|++.+++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57899999999 88999999999999999886 56788999976533221 12233468887765
No 33
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=1.7e-18 Score=143.45 Aligned_cols=110 Identities=29% Similarity=0.380 Sum_probs=95.3
Q ss_pred cccccCCCcEEEEEEeeeeecccCcC-CCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L 328 (398)
+..|.+..|.|.|+|++|+||+..+. .|.+||||++++.+ ..++||+++++++||.|||+|.|.+... ....|
T Consensus 7 sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L 86 (125)
T cd04029 7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTL 86 (125)
T ss_pred EEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEE
Confidence 34456789999999999999998875 48899999999964 2357999999999999999999998642 35689
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.++|||+| .+++++||++.+++.++......+.|++|
T Consensus 87 ~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 87 QLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999 89999999999999999888888899886
No 34
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=5.2e-18 Score=141.05 Aligned_cols=116 Identities=32% Similarity=0.463 Sum_probs=100.6
Q ss_pred EeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-CCCCceeEEE
Q 015915 270 IVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-IGQDKRLGIV 346 (398)
Q Consensus 270 V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~~~d~~lG~~ 346 (398)
|++|++|+. ..|.+||||++++++ .+++|++++++.||.|||+|.|.+... ..+.|.++|||++ .++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence 689999988 678999999999987 578999999999999999999999653 4678999999999 8899999999
Q ss_pred EEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915 347 KLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL 396 (398)
Q Consensus 347 ~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~ 396 (398)
.++++++..+.....|++|... .+...+|+|+++++ |.|..-
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~--~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVS--YQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEE--EeCCCC
Confidence 9999999988778889988642 33345799999999 999764
No 35
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.78 E-value=3.5e-18 Score=141.19 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=97.9
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC--Cce
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ--DKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~--d~~ 342 (398)
|+|+|++|++|+..+..+.+||||++++++...++|+++++++||.|||+|.|.+.. .+.|.++|||++ .++ |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 789999999999999889999999999975568899999999999999999999965 579999999999 654 589
Q ss_pred eEEEEEECcccccccc-cceEEecccccccccccCCCcccEEEEEEe
Q 015915 343 LGIVKLPLIDLEADTP-KEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
||++.++++++..... ...|+++... .....+...|+|.++++
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~~~---~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLRKL---KKSDNLSVRGKIVVSLS 123 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEeecC---CCCCCceEeeEEEEEeC
Confidence 9999999999876443 3568877542 11234556899988763
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=6.4e-18 Score=141.44 Aligned_cols=115 Identities=23% Similarity=0.371 Sum_probs=100.3
Q ss_pred CcEEEEEEeeeeecccCcCC----------CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMI----------GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v 332 (398)
.|.|+|+|++|++|...+.. |.+||||++++++....+|++++++.||.|||+|.|.+.+ ...+.+.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence 58899999999999988752 6799999999997656799999999999999999999973 46899999
Q ss_pred EEcc-CCCCceeEEEEEECccccc--ccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEA--DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
||++ .++|+++|++.++++++.. +...+.|++|. +.|+|+++++ |..
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~--~~~ 130 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIE--LKG 130 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEE--Eec
Confidence 9999 8899999999999999987 45678899873 3699999999 764
No 37
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=6.3e-18 Score=139.90 Aligned_cols=109 Identities=31% Similarity=0.468 Sum_probs=95.3
Q ss_pred cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEE
Q 015915 258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVF 333 (398)
Q Consensus 258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~ 333 (398)
.|....+.|+|+|++|++|+..+..|.+||||++++.+ ...++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 10 DYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred EEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 34567899999999999999999889999999999864 2467999999999999999999998642 3468999999
Q ss_pred Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
|+| .++|++||++.++++++..+...+.|++|.
T Consensus 90 d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999 889999999999999998877788999873
No 38
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=1.6e-17 Score=139.59 Aligned_cols=120 Identities=25% Similarity=0.413 Sum_probs=98.7
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC---------CCCeEEEEEEEc
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK---------ETQSLIFEVFDK 335 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------~~~~L~v~v~d~ 335 (398)
.|+|+|.+|++|+.+|..|.+||||+++++. .+++|+++++|+||.|||+|.|.+... ....+.++|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5899999999999999999999999999986 688999999999999999999975321 125789999999
Q ss_pred c-CCCCceeEEEEE-ECccccc---ccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915 336 D-IGQDKRLGIVKL-PLIDLEA---DTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395 (398)
Q Consensus 336 d-~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~ 395 (398)
| .++|++||++.+ ++..+.. ......|++|.+ .+...|+|.+++. +.|.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~--~~~~~ 135 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFE--LIEVT 135 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeE--EEEeC
Confidence 9 889999999987 4444432 345678998853 2457899999999 88753
No 39
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.76 E-value=5.6e-18 Score=136.41 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=82.2
Q ss_pred cEEEEEEeeeeecccCcCC----CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC-CCeEEEEEEEcc-C
Q 015915 264 GKVAVTIVKANNLKNMEMI----GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVFDKD-I 337 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~L~v~v~d~d-~ 337 (398)
|+|.|+|++|++|+..+.. +.+||||+++++. .++||+++++++||+|||+|.|.+.+.. ...|.++|||+| .
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR-RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC-EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 7899999999999987642 3589999999986 5789999999999999999999986533 347999999999 8
Q ss_pred CCCceeEEEEEECcccccccc
Q 015915 338 GQDKRLGIVKLPLIDLEADTP 358 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~~ 358 (398)
++|++||++.++|+++..+..
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCCcceEEEEEEHHHHHhhCC
Confidence 999999999999999987543
No 40
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=6.4e-18 Score=140.29 Aligned_cols=111 Identities=25% Similarity=0.297 Sum_probs=93.3
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCe
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQS 327 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~ 327 (398)
++..|....+.|.|+|++|+||+.++.. |.+||||++++.+. .++||+++++++||+|||+|.|.+... ....
T Consensus 6 ~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~ 85 (128)
T cd08392 6 FALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQ 85 (128)
T ss_pred EEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcE
Confidence 3444567789999999999999999874 99999999999652 367999999999999999999998542 3568
Q ss_pred EEEEEEEcc-CCCCceeEEEEEECccccccc---ccceEEec
Q 015915 328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADT---PKEAELRL 365 (398)
Q Consensus 328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L 365 (398)
|.+.|||++ .+++++||++.++|+++.... ....|++|
T Consensus 86 L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 86 LQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 999999999 889999999999999996542 44578865
No 41
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=7.9e-18 Score=139.96 Aligned_cols=111 Identities=28% Similarity=0.381 Sum_probs=91.9
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEE-ee--cCCCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AE--DKETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~--~~~~~~L~ 329 (398)
+..|....+.|+|+|++|+||+..+.. |.+||||++++.+ .++.||+++++++||.|||+|.|. +. +.....|.
T Consensus 8 ~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~ 87 (128)
T cd08388 8 SLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLH 87 (128)
T ss_pred EEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEE
Confidence 334566789999999999999998876 8999999999864 346799999999999999999994 43 22345799
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccc--cccceEEecc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEAD--TPKEAELRLL 366 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 366 (398)
++|||+| .++|++||++.++++++... +....|++++
T Consensus 88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 88 FAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999 89999999999999999664 4456788764
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=8.2e-18 Score=135.02 Aligned_cols=100 Identities=27% Similarity=0.411 Sum_probs=89.7
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeE
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLG 344 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG 344 (398)
.|.|+|++|++|+..+..+.+||||++++++ ..++|++++++.||.|||+|.|.+.++..+.|.++|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccE
Confidence 3789999999999998889999999999998 68899999999999999999999988777899999999875 88999
Q ss_pred EEEEECccccccc--ccceEEeccc
Q 015915 345 IVKLPLIDLEADT--PKEAELRLLP 367 (398)
Q Consensus 345 ~~~i~l~~l~~~~--~~~~~~~L~~ 367 (398)
++.+++.++.... ..+.|++|..
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999997654 4578998853
No 43
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.75 E-value=5.8e-18 Score=139.46 Aligned_cols=110 Identities=18% Similarity=0.259 Sum_probs=93.5
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L 328 (398)
+..|.+..+.|.|+|++|+||+..+..|.+||||++++.+. .+++|++++++.||+|||+|.|.+.. .....|
T Consensus 6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L 85 (124)
T cd08680 6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTL 85 (124)
T ss_pred EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEE
Confidence 44566788999999999999999988889999999998642 36899999999999999999999854 356789
Q ss_pred EEEEEEcc-CCCCceeEEEEEECccccccc-ccceEEec
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADT-PKEAELRL 365 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 365 (398)
.++|||++ .+++++||.+.++|+++.... ....|+.|
T Consensus 86 ~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 86 QVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999 889999999999999996543 35567653
No 44
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=2.2e-17 Score=137.26 Aligned_cols=114 Identities=27% Similarity=0.468 Sum_probs=96.6
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C------
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I------ 337 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~------ 337 (398)
.|+|+|++|++|+..|..|.+||||++++++ ..++|++++++.||.|||+|.|.+..+ ...+.++|||+| .
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccc
Confidence 6899999999999999889999999999986 578999999999999999999988654 468999999998 3
Q ss_pred -----CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEE
Q 015915 338 -----GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387 (398)
Q Consensus 338 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l 387 (398)
++|++||++.+++.++.. ..+.|+.|.+. ......+|+|.+++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~-----~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR-----TDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccC-----CCCCcEeEEEEEEC
Confidence 478999999999998753 45689988753 24445799999874
No 45
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=7.5e-18 Score=138.20 Aligned_cols=103 Identities=19% Similarity=0.397 Sum_probs=88.2
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD 336 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d 336 (398)
..+.|.|+|++|+||+.++ .|.+||||++++.+ ..++||++++++.||.|||+|.|.+... ....+.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 5789999999999999998 78999999999975 2356899999999999999999998542 2346889999999
Q ss_pred -CC-CCceeEEEEEECcccccccccceEEec
Q 015915 337 -IG-QDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 337 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.. ++++||.+.+++.++..+...+.|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 54 579999999999999876667788864
No 46
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.75 E-value=6.2e-18 Score=137.16 Aligned_cols=99 Identities=28% Similarity=0.483 Sum_probs=85.3
Q ss_pred cEEEEEEeeeeecccCcCC-CCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC---CCCeEEEEEEEcc-
Q 015915 264 GKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK---ETQSLIFEVFDKD- 336 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~---~~~~L~v~v~d~d- 336 (398)
|+|+|+|++|++|+..+.. +.+||||++++.+ ...++|+++++|+||.|||+|.|.+... ..+.|.++|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999853 3468999999999999999999987653 3568999999999
Q ss_pred CCCCceeEEEEEECcccccccccceEEec
Q 015915 337 IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.++|++||++.+++.++.. ...|+++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 8899999999999999973 2345544
No 47
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.75 E-value=1.5e-17 Score=138.15 Aligned_cols=110 Identities=28% Similarity=0.347 Sum_probs=95.3
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~ 329 (398)
+..|....+.|+|+|++|+||+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+... ....|.
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLD 87 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEE
Confidence 3445567899999999999999999889999999999864 3578999999999999999999998542 346899
Q ss_pred EEEEEcc-C--CCCceeEEEEEECcccccccccceEEec
Q 015915 330 FEVFDKD-I--GQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 330 v~v~d~d-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
+.|||++ . ++|++||++.++++++..+.....|++|
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 9999998 4 6899999999999999887777889876
No 48
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.3e-17 Score=138.25 Aligned_cols=109 Identities=29% Similarity=0.351 Sum_probs=91.4
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSL 328 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L 328 (398)
+..|....+.|+|+|++|++|+..+..+.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....|
T Consensus 8 ~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l 87 (125)
T cd04031 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTL 87 (125)
T ss_pred EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEE
Confidence 3345567899999999999999999889999999999864 246799999999999999999998643 235689
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.++|||++ .++|++||++.+++++. .......|++|
T Consensus 88 ~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L 124 (125)
T cd04031 88 EVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPL 124 (125)
T ss_pred EEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEEC
Confidence 99999999 88999999999999993 33345678876
No 49
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.6e-17 Score=137.71 Aligned_cols=111 Identities=28% Similarity=0.410 Sum_probs=95.6
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIF 330 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v 330 (398)
+..|..+.+.|+|+|++|++|+..+..+.+||||++++.+ ..+.+|++++++.||.|||+|.|.+.. .....|.+
T Consensus 8 ~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~ 87 (125)
T cd08386 8 SVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYL 87 (125)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEE
Confidence 3345567899999999999999999889999999999842 356899999999999999999997532 23467999
Q ss_pred EEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
+|||+| .+++++||++.++++++..+...+.|+.|.
T Consensus 88 ~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 88 QVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999 889999999999999999887888999875
No 50
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.74 E-value=4.2e-17 Score=135.34 Aligned_cols=112 Identities=29% Similarity=0.408 Sum_probs=95.8
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK 341 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~ 341 (398)
.|+|+|++|++|+..+..+.+||||+++..+ ...++|++++++.||.|||+|.|.+.......|.++|||++ .++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999999889999999999764 24679999999999999999999998755678999999999 78999
Q ss_pred eeEEEEEECcccccc---cccceEEecccccccccccCCCcccEEEEEEe
Q 015915 342 RLGIVKLPLIDLEAD---TPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+||++.++++++..+ ...+.|+.|. +.|++++.++
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~ 119 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVS 119 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEE
Confidence 999999999986543 3456788763 2589988888
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.74 E-value=1.2e-17 Score=138.02 Aligned_cols=110 Identities=31% Similarity=0.418 Sum_probs=94.2
Q ss_pred cccccCCCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L 328 (398)
+..|....+.|+|+|++|+||+..+ ..+.+||||++++.+. .+++|++++++.||.|||+|.|.+... ....|
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l 85 (123)
T cd08521 6 SLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTL 85 (123)
T ss_pred EEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEE
Confidence 3345567899999999999999988 6789999999998532 457999999999999999999988642 35689
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
.++|||++ .+++++||++.++++++..+...+.|++|
T Consensus 86 ~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 86 QLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999999 88999999999999999877777888865
No 52
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.74 E-value=9.6e-18 Score=139.01 Aligned_cols=114 Identities=32% Similarity=0.483 Sum_probs=97.6
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccC-CCCCceeccEEEEEeecCC----CCeEEEEEEEcc-CC
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVD-NNLNPVWNQTFELIAEDKE----TQSLIFEVFDKD-IG 338 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~~~v~~~~----~~~L~v~v~d~d-~~ 338 (398)
.|+|+|++|++|+..+..+.+||||++++++..+++|++.. ++.||.|||.|.|.+.+.. ...|.++|||++ .+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 47999999999999988899999999999875678999875 5899999999999997653 578999999999 78
Q ss_pred CCceeEEEEEECccccccccc-----ceEEecccccccccccCCCcccEEEE
Q 015915 339 QDKRLGIVKLPLIDLEADTPK-----EAELRLLPSLDMLKIKDKKDRGSITV 385 (398)
Q Consensus 339 ~d~~lG~~~i~l~~l~~~~~~-----~~~~~L~~~~~~~~~~~~~~~G~I~l 385 (398)
+|++||++.+++.++..+... ..|++|.. .+++..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-------~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-------PSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-------CCCCcCeEEeC
Confidence 999999999999999876543 57888754 45778899874
No 53
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=2.5e-17 Score=134.36 Aligned_cols=112 Identities=32% Similarity=0.492 Sum_probs=97.6
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG 344 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG 344 (398)
|+|+|++|++|+..+..+.+||||++++.+...++|+++.++.||.|||+|.|.+.+...+.+.++|||++ .+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999999888899999999997656689999999999999999999997756678999999999 88999999
Q ss_pred EEEEECcccccccccceEEecccccccccccCCCcccEEE
Q 015915 345 IVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSIT 384 (398)
Q Consensus 345 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~ 384 (398)
++.+++.++..+...+.|++|.+ .++...|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~L~~-------~g~~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTELTLPLDG-------QGGGKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEEEEEECcC-------CCCccCceEE
Confidence 99999999988777888998864 4455566664
No 54
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=1.9e-17 Score=136.98 Aligned_cols=104 Identities=27% Similarity=0.553 Sum_probs=92.7
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCC-CCCceeccEEEEEeecC---CCCeEEEEEEEcc-CC
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDN-NLNPVWNQTFELIAEDK---ETQSLIFEVFDKD-IG 338 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~~~v~~~---~~~~L~v~v~d~d-~~ 338 (398)
|.|+|+|++|++|++.+..+.+||||++++++ ..++|++.++ +.||.|||+|.|.+... ..+.|.|+|||++ .+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 78999999999999998889999999999987 4678888774 89999999999999875 2568999999999 88
Q ss_pred CCceeEEEEEECcccccccccceEEecccc
Q 015915 339 QDKRLGIVKLPLIDLEADTPKEAELRLLPS 368 (398)
Q Consensus 339 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 368 (398)
+|++||++.++++++..++..+.|+.|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999988888899988653
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=2.1e-17 Score=133.81 Aligned_cols=100 Identities=26% Similarity=0.430 Sum_probs=87.9
Q ss_pred EEEEEeeeeecccCcC-CCCCCcEEEEEEcceeeEeccccCCCCCcee-ccEEEEEeecC--CCCeEEEEEEEcc-CCCC
Q 015915 266 VAVTIVKANNLKNMEM-IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVW-NQTFELIAEDK--ETQSLIFEVFDKD-IGQD 340 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~W-ne~f~~~v~~~--~~~~L~v~v~d~d-~~~d 340 (398)
|.|+|++|++|+.++. .|.+||||++++++ .++||+++++++||.| ||+|.|.+... ..+.|.++|||++ .++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5799999999999884 68899999999987 7899999999999999 99999998753 2468999999999 8899
Q ss_pred ceeEEEEEECcccccc---cccceEEecc
Q 015915 341 KRLGIVKLPLIDLEAD---TPKEAELRLL 366 (398)
Q Consensus 341 ~~lG~~~i~l~~l~~~---~~~~~~~~L~ 366 (398)
++||++.++++++... ...+.|++|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9999999999999873 3467898874
No 56
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=3.2e-17 Score=133.69 Aligned_cols=99 Identities=22% Similarity=0.320 Sum_probs=85.5
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCcee
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRL 343 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~l 343 (398)
+.|.|+|++|++|..++ ..||||++++++ .+.+|++.++ .||.|||+|.|.+.+. ...|.++|||+|...||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCce
Confidence 68999999999997654 458999999987 6889999877 4999999999999875 4459999999995599999
Q ss_pred EEEEEECccccccccc--ceEEecccc
Q 015915 344 GIVKLPLIDLEADTPK--EAELRLLPS 368 (398)
Q Consensus 344 G~~~i~l~~l~~~~~~--~~~~~L~~~ 368 (398)
|++.++|+++..+... ..|++|.+.
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999876555 789999764
No 57
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=2.8e-17 Score=135.90 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=95.4
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEE-eec--CCCCeEE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELI-AED--KETQSLI 329 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~-v~~--~~~~~L~ 329 (398)
++-.|....+.|.|+|++|+||+..+..|.+||||++.+.+ ..+++|+++++ .||+|||+|.|. +.. .....|.
T Consensus 7 ~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~ 85 (124)
T cd08389 7 VAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALR 85 (124)
T ss_pred EEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEE
Confidence 34456677899999999999999999889999999988754 35789999887 999999999998 542 2456899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
++|||++ .+++++||++.++|+++..+.....|++|.
T Consensus 86 ~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 86 FRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999 899999999999999998887888999875
No 58
>PLN03008 Phospholipase D delta
Probab=99.73 E-value=3.2e-17 Score=168.34 Aligned_cols=127 Identities=28% Similarity=0.475 Sum_probs=108.3
Q ss_pred CcEEEEEEeeeeecccCcC------------------------------------------CCCCCcEEEEEEcceeeEe
Q 015915 263 QGKVAVTIVKANNLKNMEM------------------------------------------IGKSDPYAVVHIKPLFKVK 300 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~k 300 (398)
+|.|.++|.+|++|+++|. .+++||||++.++++...|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 7999999999999886331 2467999999998766779
Q ss_pred ccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCc
Q 015915 301 TNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKD 379 (398)
Q Consensus 301 T~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~ 379 (398)
|+++++++||+|||+|.|.+.++ ...|.|+|||+| ++ +++||++.+|++++..+...+.|++|..... +..+.
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp~k~ 166 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KPPKA 166 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CCCCC
Confidence 99999999999999999999885 458999999999 65 6899999999999999988999999986421 34455
Q ss_pred ccEEEEEEeeeeeecccC
Q 015915 380 RGSITVKVGASKHSFNLF 397 (398)
Q Consensus 380 ~G~I~l~l~~~y~P~~~~ 397 (398)
.|+|+++++ |+|+.+.
T Consensus 167 ~~kl~v~lq--f~pv~~~ 182 (868)
T PLN03008 167 ETAIFIDMK--FTPFDQI 182 (868)
T ss_pred CcEEEEEEE--EEEcccc
Confidence 789999999 9999864
No 59
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=4.9e-17 Score=133.66 Aligned_cols=102 Identities=33% Similarity=0.581 Sum_probs=91.7
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
|.|+|+|++|++|+..+..|.+||||++++++...++|++++++.||.|||+|.|.+... .+.|.++|||++ .++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 789999999999999998899999999999875678999999999999999999988764 578999999999 889999
Q ss_pred eEEEEEECcccccccccceEEeccc
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
||++.+++.++..+ ..+.|+.+..
T Consensus 80 IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 80 LGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eeEEEEeHHHhhCC-CCCceEEecC
Confidence 99999999999876 6677887754
No 60
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=5.6e-17 Score=133.98 Aligned_cols=111 Identities=24% Similarity=0.325 Sum_probs=95.8
Q ss_pred cccccCCCcEEEEEEeeeeecccCc-CCCCCCcEEEEEEcc--eeeEeccccCCCCCceeccEEEEEeecC--CCCeEEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNME-MIGKSDPYAVVHIKP--LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIF 330 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v 330 (398)
+..|....+.|+|+|++|++|+..+ ..+.+||||++++.+ ....+|++++++.||.|||+|.|.+... ....|.+
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i 85 (123)
T cd08390 6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRL 85 (123)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEE
Confidence 3445677899999999999999998 678999999999853 3467899999999999999999998653 2357999
Q ss_pred EEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
+|||++ .+++++||++.++++++........|++|.
T Consensus 86 ~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 86 SVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999999 788999999999999999888888999874
No 61
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=4.3e-17 Score=138.79 Aligned_cols=102 Identities=35% Similarity=0.557 Sum_probs=89.7
Q ss_pred cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----------------------------eeEeccccCCCCCce
Q 015915 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----------------------------FKVKTNVVDNNLNPV 311 (398)
Q Consensus 260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----------------------------~~~kT~~~~~t~nP~ 311 (398)
.++.+.|.|+|++|++|.++|..|.+||||++++.+. ..++|+++++++||.
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 4789999999999999999999999999999998642 237899999999999
Q ss_pred eccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEec
Q 015915 312 WNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 312 Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
|||+|.|.+.+...+.|.++|||++ |++||++.++++++.. ...+.|++|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999998766789999999987 8999999999999984 456788865
No 62
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=3.3e-16 Score=133.25 Aligned_cols=119 Identities=24% Similarity=0.304 Sum_probs=93.6
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEE----cceeeEeccccCCCCCceeccEEEEEeecC--------CCCeEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI----KPLFKVKTNVVDNNLNPVWNQTFELIAEDK--------ETQSLIF 330 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~--------~~~~L~v 330 (398)
.|.|+|....+.+|+..+..+.+||||++++ ...++.||+++++|+||+|||+|.|.+... ....|.+
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 3444544444444777777789999999997 334688999999999999999999999643 2457999
Q ss_pred EEEEcc-C-CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 331 EVFDKD-I-GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 331 ~v~d~d-~-~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+|||++ + ++|++||++.++|+.+........|++|.. ......|.|++++.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-------~~k~~Gg~l~v~ir 135 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-------GRKATGGKLEVKVR 135 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-------CCCCcCCEEEEEEE
Confidence 999998 4 689999999999999987766667888753 22345689998887
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=9.2e-17 Score=138.85 Aligned_cols=106 Identities=28% Similarity=0.358 Sum_probs=90.7
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEEE
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEVF 333 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v~ 333 (398)
.+.|.|+|+|++|+||+..+..|.+||||++++.+ ..++||+++++|.||.|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 46899999999999999999889999999999842 357899999999999999999998532 23457999999
Q ss_pred Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
|+| .++|++||++.++++++...+..+.|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999 889999999999999998766667777653
No 64
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.5e-16 Score=134.68 Aligned_cols=91 Identities=37% Similarity=0.617 Sum_probs=83.7
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCc
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDK 341 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~ 341 (398)
.|.|+|+|++|++|+..+. +.+||||++++++ ++++|++++++.||.|||+|.|.+.++ ...+.++|||++ +++|+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 3889999999999998887 8999999999987 689999999999999999999999876 678999999999 99999
Q ss_pred eeEEEEEECcccccc
Q 015915 342 RLGIVKLPLIDLEAD 356 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~ 356 (398)
+||.+.+++.++...
T Consensus 78 ~iG~a~i~l~~l~~~ 92 (145)
T cd04038 78 SMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEEHHHhhhh
Confidence 999999999997654
No 65
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.69 E-value=1.6e-16 Score=131.29 Aligned_cols=93 Identities=28% Similarity=0.353 Sum_probs=82.1
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee-cCCCCeEEEEEEEcc-CC
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-DKETQSLIFEVFDKD-IG 338 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~-~~~~~~L~v~v~d~d-~~ 338 (398)
...|.|+|+|++|++|+. +..+.+||||++++++ .+++|++++++.||+|||+|.|... ....+.|+|+|||+| .+
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 568999999999999984 6678999999999987 4899999999999999999999743 235679999999999 88
Q ss_pred CCceeEEEEEECccccc
Q 015915 339 QDKRLGIVKLPLIDLEA 355 (398)
Q Consensus 339 ~d~~lG~~~i~l~~l~~ 355 (398)
+|++||++.++++....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997664
No 66
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.69 E-value=1.4e-16 Score=134.02 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=90.7
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcc---eeeEeccccCCCCCceeccEEEEEeecC---------------CCCe
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP---LFKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQS 327 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~~ 327 (398)
|+|+|++|++|+.+ ..|.+||||+++++. ..+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 778999999999983 4678999999999999999999998664 4568
Q ss_pred EEEEEEEcc-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915 328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368 (398)
Q Consensus 328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 368 (398)
+.++|||++ .+++++||++.++++++........|++|.+.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999 78999999999999999877778899998764
No 67
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=5.6e-17 Score=135.91 Aligned_cols=110 Identities=27% Similarity=0.337 Sum_probs=92.5
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~ 329 (398)
+..|....|.|.|+|++|++|+..+..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|.
T Consensus 5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~ 84 (133)
T cd08384 5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLE 84 (133)
T ss_pred EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEE
Confidence 3345667899999999999999999889999999999864 2467999999999999999999998643 346899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
++|||+| .++|++||++.+++.+ .+.....|+++..
T Consensus 85 ~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 85 ITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 9999999 8899999999999986 3345567887654
No 68
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=1.7e-16 Score=128.67 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=87.1
Q ss_pred CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccc-cc
Q 015915 281 MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEAD-TP 358 (398)
Q Consensus 281 ~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~-~~ 358 (398)
..|.+||||+++++++...+|++++++.||.|||+|.|.+.+.....|.|.|||++ . +|++||++.++|+++... ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 46889999999998756689999999999999999999998766678999999999 7 999999999999998653 34
Q ss_pred cceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915 359 KEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF 394 (398)
Q Consensus 359 ~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~ 394 (398)
...|++|.. ...|+|+++++ |.|+
T Consensus 88 ~~~w~~L~~----------~~~G~i~~~~~--~~p~ 111 (111)
T cd04052 88 GQQWFPLSG----------NGQGRIRISAL--WKPV 111 (111)
T ss_pred cceeEECCC----------CCCCEEEEEEE--EecC
Confidence 578998742 35799999999 9985
No 69
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2e-16 Score=130.79 Aligned_cols=118 Identities=29% Similarity=0.356 Sum_probs=92.7
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEccee-eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF-KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
+|+|+|++|++|+..|..|.+||||++++++.. ..+|+++++++||.|||+|.|.+..+..+.|.++|||+| .++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999999999999999998642 357888889999999999999987666789999999999 889999
Q ss_pred eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
||++.+++++..-. .+..+.-+. ......|.++.+-. +.|
T Consensus 81 iG~~~i~l~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~--~~~ 120 (124)
T cd04037 81 IGETVIDLEDRFFS-KHRATCGLP--------PTYEESGPNQWRDS--LKP 120 (124)
T ss_pred eEEEEEeecccccc-hHHHhccCC--------CcccccCceecCcc--cCc
Confidence 99999999987531 121222111 22335677777666 554
No 70
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.68 E-value=6.2e-16 Score=130.21 Aligned_cols=128 Identities=14% Similarity=0.209 Sum_probs=102.2
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc--CC
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD--IG 338 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d--~~ 338 (398)
+-...|.|.|.+|++|+.++ +|||.+.+++....||+++.++.||.|+|+|+|..... ...++|.||+.+ .+
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 34568999999999998754 79999999996668999999999999999999976543 467999998765 32
Q ss_pred ---CCceeEEEEEECcccccccccceEEecccccccc---cccCCCcccEEEEEEeeeeeeccc
Q 015915 339 ---QDKRLGIVKLPLIDLEADTPKEAELRLLPSLDML---KIKDKKDRGSITVKVGASKHSFNL 396 (398)
Q Consensus 339 ---~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~---~~~~~~~~G~I~l~l~~~y~P~~~ 396 (398)
++++||.+.|+++++..+...+.|+++....... ........|+|+++++ |++...
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~r--f~~~~~ 143 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKAR--YQSTRV 143 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEE--EEEeee
Confidence 6899999999999999888889999997642110 0001244579999999 998754
No 71
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.8e-16 Score=134.77 Aligned_cols=92 Identities=26% Similarity=0.367 Sum_probs=80.5
Q ss_pred EEEEEEeeeeecccCcCCC--------------CCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecC-CCCeEE
Q 015915 265 KVAVTIVKANNLKNMEMIG--------------KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLI 329 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~ 329 (398)
.|.|+|++|++|+.+|..+ .+||||++.+++ .+.+|++++++.||+|||+|.|.+..+ ..+.+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999999999988543 689999999998 467999999999999999999987543 356899
Q ss_pred EEEEEcc-CCCCceeEEEEEECccccccc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADT 357 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~ 357 (398)
++|||+| .++|+++|++.+++.++...+
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999 889999999999999987644
No 72
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=9.5e-17 Score=134.51 Aligned_cols=111 Identities=23% Similarity=0.212 Sum_probs=92.0
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeec--CCCCeE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSL 328 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L 328 (398)
++..|.+..+.|.|+|++|+||+..+..|.+||||++++.+. .+.||+++++++||+|||+|.|.+.. .....|
T Consensus 6 ~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l 85 (136)
T cd08406 6 LSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSL 85 (136)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEE
Confidence 344566778999999999999999998899999999999542 25689999999999999999999864 345689
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.|+|||+| .+++++||++.+.... .+...+.|..+..
T Consensus 86 ~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 86 RVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999999 8999999999997654 4455667776654
No 73
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.68 E-value=1.4e-16 Score=133.49 Aligned_cols=111 Identities=26% Similarity=0.337 Sum_probs=91.8
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcC--CCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCC
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQ 326 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~ 326 (398)
++..|.+..+.|.|.|++|+||...+. .+.+||||++++.+. .++||+++++++||+|||+|.|.+... ...
T Consensus 6 ~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~ 85 (138)
T cd08407 6 LSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAAS 85 (138)
T ss_pred EEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCcc
Confidence 344566788999999999999999883 355999999999752 356899999999999999999999653 356
Q ss_pred eEEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 327 SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 327 ~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.|.++|||+| .+++++||++.+++.. .+.+.++|..+..
T Consensus 86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 86 SVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 7999999999 9999999999999975 4555677877653
No 74
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.1e-15 Score=128.08 Aligned_cols=115 Identities=28% Similarity=0.441 Sum_probs=93.4
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcce------------eeEeccccCCCCCcee-ccEEEEEeecCCCCeEEEE
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------FKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE 331 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------------~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~L~v~ 331 (398)
+..|++++|+||+ ++..|++||||++++.+. ++++|+++++++||.| ||+|.|.+.. ++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 777899999999999641 3689999999999999 9999999853 4689999
Q ss_pred EEEcc-CCC---CceeEEEEEECcccccccc---cceEEecccccccccccCCCcccEEEEEE
Q 015915 332 VFDKD-IGQ---DKRLGIVKLPLIDLEADTP---KEAELRLLPSLDMLKIKDKKDRGSITVKV 387 (398)
Q Consensus 332 v~d~d-~~~---d~~lG~~~i~l~~l~~~~~---~~~~~~L~~~~~~~~~~~~~~~G~I~l~l 387 (398)
|||++ .++ +++||++.+++.++..+.. ...|+++.++ ...+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~-----~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR-----TPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC-----CCCCcEEEEEEEEe
Confidence 99987 433 7999999999999976532 4467777543 34566789998875
No 75
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=4.2e-16 Score=130.61 Aligned_cols=97 Identities=31% Similarity=0.470 Sum_probs=85.2
Q ss_pred ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc------eeeEeccccCCCCCceeccEEEEEeecC----CCCeE
Q 015915 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSL 328 (398)
Q Consensus 259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~L 328 (398)
+....+.|+|+|++|++|+..+..|.+||||++++.+ ..+++|+++++|+||.|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 3456789999999999999998889999999999863 2468999999999999999999998652 34589
Q ss_pred EEEEEEcc-CCCCceeEEEEEECccccc
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEA 355 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~ 355 (398)
.++|||++ .++|++||++.++++++..
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999 8889999999999999975
No 76
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=1.4e-15 Score=124.47 Aligned_cols=112 Identities=28% Similarity=0.441 Sum_probs=88.1
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC--CCeEEEEEEEcc-CCCCce
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~v~d~d-~~~d~~ 342 (398)
|+|+|++|++|+.. |.+||||.+++++...++|+++++ .||.|||+|.|.+...+ ...+.+.+||.+ ..++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 789999999998755689999988 99999999999987643 245777788877 656666
Q ss_pred eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+|.+. +..+..+...+.|++|.+. .......|+|++++.
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~-----~~~~~~~G~l~l~~~ 116 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPV-----DPDSEVQGSVRLRAR 116 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccC-----CCCCCcCceEEEEEE
Confidence 66654 5555556677899998753 133567899999998
No 77
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.67 E-value=1.2e-15 Score=126.45 Aligned_cols=117 Identities=26% Similarity=0.376 Sum_probs=93.9
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
..|+|+|.+|+ |...+..+.+||||.+++++...++|++++++.||.|||+|.|.+.. .+.|.++|||++ .++|++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence 36899999998 55555578999999999987547899999999999999999999864 578999999999 889999
Q ss_pred eEEEEEECcccccccc-----cceEEecccccccccccCCCcccEEEEEE
Q 015915 343 LGIVKLPLIDLEADTP-----KEAELRLLPSLDMLKIKDKKDRGSITVKV 387 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~G~I~l~l 387 (398)
+|++.++++++..... ...|+++... . ..++...|++.+++
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSE---N-KGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEcc---C-CCcceeeeeEEEEe
Confidence 9999999999876433 1236666532 0 11446789999876
No 78
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6.9e-16 Score=152.40 Aligned_cols=135 Identities=26% Similarity=0.284 Sum_probs=113.5
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce--eeEeccccCCCCCceeccEEEEEeec--CCCCeEEE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIF 330 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v 330 (398)
++..|......|+|+|++|++|+.+|..|.+||||++++.+. .+.+|++.++++||.|||+|.|.+.. .....|.+
T Consensus 158 fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l 237 (421)
T KOG1028|consen 158 FSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHL 237 (421)
T ss_pred EEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEE
Confidence 444566788999999999999999997788999999999763 56899999999999999999999743 35679999
Q ss_pred EEEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915 331 EVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395 (398)
Q Consensus 331 ~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~ 395 (398)
+|||.| +++|+++|++.++|..+........|.++..... ......|+|.++++ |.|..
T Consensus 238 ~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~----~~~~~~gel~~sL~--Y~p~~ 297 (421)
T KOG1028|consen 238 SVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST----DSEELAGELLLSLC--YLPTA 297 (421)
T ss_pred EEEecCCcccccEEEEEEecCccccccccceeeeccccccC----CcccccceEEEEEE--eecCC
Confidence 999999 9999999999999999988777788998876421 12222389999999 99973
No 79
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=4.1e-16 Score=131.19 Aligned_cols=106 Identities=26% Similarity=0.361 Sum_probs=89.5
Q ss_pred ccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEE
Q 015915 259 ELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEV 332 (398)
Q Consensus 259 ~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v 332 (398)
|....+.|.|+|++|++|+..|..|.+||||++++.+. .+.+|+++++++||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 44568899999999999999998999999999998541 357899999999999999999998642 345788999
Q ss_pred EEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
||+| .+++++||++.+++.. .+.....|..+.
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9999 8999999999999998 344567787764
No 80
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=3.1e-16 Score=131.93 Aligned_cols=110 Identities=30% Similarity=0.385 Sum_probs=91.2
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~ 329 (398)
+..|.+..|.|+|+|++|++|+..+..|.+||||++++.+ ..+++|++++++.||.|||+|.|.+.. .....|.
T Consensus 7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~ 86 (136)
T cd08405 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLI 86 (136)
T ss_pred EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEE
Confidence 3345567899999999999999998889999999999842 235789999999999999999998753 2345899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
|+|||++ .++|++||++.+++.+. +...+.|.++..
T Consensus 87 ~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 87 ITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 9999999 88999999999999886 444567777653
No 81
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=2.4e-16 Score=132.64 Aligned_cols=111 Identities=32% Similarity=0.446 Sum_probs=92.3
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L 328 (398)
++..|.++.|.|+|+|++|++|+..+..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|
T Consensus 6 ~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l 85 (136)
T cd08402 6 FSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHL 85 (136)
T ss_pred EEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEE
Confidence 44456678899999999999999999899999999999853 1357899999999999999999998643 23479
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.++|||++ .++|++||++.+++... +.....|.++..
T Consensus 86 ~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 86 IVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 99999999 89999999999999764 445567877654
No 82
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.2e-15 Score=123.80 Aligned_cols=99 Identities=22% Similarity=0.257 Sum_probs=84.3
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC----CCeEEEEEEEcc-C
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE----TQSLIFEVFDKD-I 337 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~----~~~L~v~v~d~d-~ 337 (398)
.-.|+|+|++|++|. .|.+||||++++++ ++++|++++++.||.|||+|.|.+..+. ...|.++|||++ .
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG-QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC-EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 346899999999998 47899999999997 5789999999999999999999985432 458999999999 8
Q ss_pred CCCceeEEEEEECcccccccc---cceEEecc
Q 015915 338 GQDKRLGIVKLPLIDLEADTP---KEAELRLL 366 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~~---~~~~~~L~ 366 (398)
++|++||++.++++++..+.. ...|++|.
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 889999999999999976543 35677764
No 83
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=2.6e-16 Score=132.01 Aligned_cols=111 Identities=33% Similarity=0.480 Sum_probs=91.0
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSL 328 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L 328 (398)
++..|.++.|.|+|+|++|++|++.+..|.+||||++++.+ ..+++|+++++++||.|||+|.|.+... ....|
T Consensus 5 ~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l 84 (134)
T cd08403 5 FSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSL 84 (134)
T ss_pred EEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEE
Confidence 34456678899999999999999999999999999999853 2357899999999999999999988542 23469
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.++|||++ .++|++||++.+++. ..+.....|.++..
T Consensus 85 ~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 85 IIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 99999999 899999999999987 33445567777643
No 84
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=3.5e-16 Score=131.68 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=93.5
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~ 329 (398)
+..|.+..+.|.|+|++|+||+..+ .+.+||||++++.+. .+++|++++++.||.|||+|.|.+.. .....|.
T Consensus 7 sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~ 85 (137)
T cd08409 7 SLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLS 85 (137)
T ss_pred EEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEE
Confidence 3345567899999999999999988 788999999998642 35689999999999999999999953 3446899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
++|||++ .+++++||++.+.......+.+.++|.++..
T Consensus 86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999999 8999999999999777666666778887754
No 85
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.64 E-value=9.9e-16 Score=125.99 Aligned_cols=97 Identities=32% Similarity=0.423 Sum_probs=85.0
Q ss_pred EeeeeecccCcCCCCCCcEEEEEEccee------eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-----CC
Q 015915 270 IVKANNLKNMEMIGKSDPYAVVHIKPLF------KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-----IG 338 (398)
Q Consensus 270 V~~a~~L~~~d~~g~~dpyv~v~~~~~~------~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-----~~ 338 (398)
.++|++|+..+..|.+||||++++.+.. .++|+++++++||.|||+|.|.+.....+.+.++|||+| .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999989999999999997632 489999999999999999999876555678999999998 46
Q ss_pred CCceeEEEEEECcccccccccceEEecc
Q 015915 339 QDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 339 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
+|++||++.++++++..+.....++.|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999999877777888773
No 86
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.63 E-value=2e-15 Score=124.70 Aligned_cols=107 Identities=28% Similarity=0.447 Sum_probs=89.9
Q ss_pred ccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEE
Q 015915 257 ELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLI 329 (398)
Q Consensus 257 ~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~ 329 (398)
-.|.+..+.|+|+|++|++|++.+..+.+||||++++.+ ....+|++++++.||.|||+|.|.... .....+.
T Consensus 8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~ 87 (123)
T cd04035 8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLR 87 (123)
T ss_pred EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEE
Confidence 345567899999999999999998889999999999843 246899999999999999999986322 2346899
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEe
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELR 364 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 364 (398)
++|||++ . ++++||.+.++++++..+..++.++.
T Consensus 88 ~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 88 LLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999999 7 89999999999999998777766653
No 87
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=1.5e-15 Score=125.74 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=88.9
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCC-CceeccEEEEEeecCC-CCeE
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNL-NPVWNQTFELIAEDKE-TQSL 328 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~-~~~L 328 (398)
++..|.+..|.|+|+|++|+||++....+.+||||++++-. ..++||+++++|+ ||.|||+|.|.+.... .-.+
T Consensus 5 ~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l 84 (135)
T cd08692 5 LGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQF 84 (135)
T ss_pred EEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEE
Confidence 34567788999999999999999876566779999998842 2468999999996 6999999999997532 2367
Q ss_pred EEEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 329 IFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 329 ~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
.++|||++ .+++++||++.+..++.. +.+.++|.+..
T Consensus 85 ~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 85 LIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 78899999 899999999999998742 33456776654
No 88
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.5e-15 Score=127.75 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=92.5
Q ss_pred ccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeec--CCCCe
Q 015915 255 TSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAED--KETQS 327 (398)
Q Consensus 255 ~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~ 327 (398)
.+..|....+.|.|+|++|+||+..+..|.+||||++++.+. .++||++++++.||+|||+|.|.+.. ..+..
T Consensus 6 ~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~ 85 (138)
T cd08408 6 LGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVT 85 (138)
T ss_pred EEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccE
Confidence 344566789999999999999999998899999999999641 25699999999999999999999964 34568
Q ss_pred EEEEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
|.|+|||.+ .+++++||++.+++..... ...+.|..+..
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 999999999 9999999999998875432 23457776643
No 89
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=1.4e-15 Score=127.63 Aligned_cols=111 Identities=22% Similarity=0.393 Sum_probs=88.4
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC--CCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~ 329 (398)
+..|.+..|.|+|+|++|++|+..|..|.+||||++++.+ ..+++|+++++|.||.|||+|.|.+... ....|.
T Consensus 6 ~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~ 85 (135)
T cd08410 6 SLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLV 85 (135)
T ss_pred EEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEE
Confidence 3445677899999999999999999889999999999843 2357999999999999999999998542 234699
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
++|||+| .++|++||++.+....... ...+.|..+..
T Consensus 86 ~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 86 FTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 9999999 8999999999866433322 13467877654
No 90
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=9.3e-16 Score=128.52 Aligned_cols=108 Identities=31% Similarity=0.408 Sum_probs=92.9
Q ss_pred cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce----eeEeccccCCCCCceeccEEEEEeecCC--CCeEEEE
Q 015915 258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL----FKVKTNVVDNNLNPVWNQTFELIAEDKE--TQSLIFE 331 (398)
Q Consensus 258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~----~~~kT~~~~~t~nP~Wne~f~~~v~~~~--~~~L~v~ 331 (398)
.|.+..+.|.|+|++|++|+..+..+.+||||++++.+. ..++|+++.++.||.|||+|.|.+.... ...|.++
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 8 SYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred EeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 344567999999999999999988899999999998652 3579999999999999999999986542 5689999
Q ss_pred EEEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
|||++ .+++++||.+.+++++ .+...+.|+++..
T Consensus 88 v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 88 VVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 99999 7899999999999999 5556788988864
No 91
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.62 E-value=3.2e-15 Score=124.87 Aligned_cols=104 Identities=32% Similarity=0.507 Sum_probs=91.2
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc-
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD- 336 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d- 336 (398)
.+.|+|+|++|++|+..+..+.+||||.+++.+ ...++|++++++.||.|||+|.|.+... ..+.|.++|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 489999999999999988888999999999963 3578999999999999999999998653 3468999999999
Q ss_pred CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 337 IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 337 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.++++++|++.++++++... ....|++|..
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 88999999999999999855 6678998864
No 92
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.62 E-value=2.5e-16 Score=148.59 Aligned_cols=105 Identities=32% Similarity=0.534 Sum_probs=92.0
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecC-CCCeEEEEEEEcc
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDK-ETQSLIFEVFDKD 336 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~-~~~~L~v~v~d~d 336 (398)
....|+|+|.+|+||.++|.+|.|||||++.+-+ ..+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 5678999999999999999999999999999954 3568999999999999999999998543 4568999999999
Q ss_pred -CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
.+++||||...+.++++... ..+.|++|++
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 99999999999999999875 4467877754
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=1.5e-14 Score=120.09 Aligned_cols=115 Identities=34% Similarity=0.445 Sum_probs=92.7
Q ss_pred EEEEEEeeeeecccCc--CCCCCCcEEEEEEcc-----eeeEeccccCCCC-CceeccEEEEEeecCCCCeEEEEEEEcc
Q 015915 265 KVAVTIVKANNLKNME--MIGKSDPYAVVHIKP-----LFKVKTNVVDNNL-NPVWNQTFELIAEDKETQSLIFEVFDKD 336 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d--~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~-nP~Wne~f~~~v~~~~~~~L~v~v~d~d 336 (398)
.|+|+|++|++|+..+ ..+.+||||++++.+ ..+++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999887 578999999999842 2468999987765 9999999999998766667999999999
Q ss_pred -CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 337 -IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 337 -~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
. +|+++|.+.++++++..+ ..+++|... .......|.|.+.+.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~-----~~~~~~~~~l~v~~~ 126 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG---YRHVPLLDS-----KGEPLELSTLFVHID 126 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc---eEEEEecCC-----CCCCCcceeEEEEEE
Confidence 6 999999999999999643 245666532 122345789998887
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.58 E-value=9.2e-15 Score=117.74 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=69.3
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc------
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK------ 335 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~------ 335 (398)
|.|+|++|+||+ +.+||||++++.+ ..+.+|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999995 5699999999864 246899999999999999999999963 67999999998
Q ss_pred -c-CCCCceeEEEEEECcc
Q 015915 336 -D-IGQDKRLGIVKLPLID 352 (398)
Q Consensus 336 -d-~~~d~~lG~~~i~l~~ 352 (398)
| .++|+.+|++.+.|+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 4 5889999998888754
No 95
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.57 E-value=8.5e-15 Score=163.53 Aligned_cols=118 Identities=23% Similarity=0.389 Sum_probs=101.7
Q ss_pred cCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCC-CCeEEEEEEEcc-C
Q 015915 260 LKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE-TQSLIFEVFDKD-I 337 (398)
Q Consensus 260 ~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~-~~~L~v~v~d~d-~ 337 (398)
..-.|.|+|+|++|+||. +..|.+||||++.++++.+.||+++++|.||+|||+|.|.+.++. ++.++++|||+| +
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 345899999999999998 447899999999999766889999999999999999998887764 467999999999 7
Q ss_pred CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccE---EEEEEe
Q 015915 338 GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGS---ITVKVG 388 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~---I~l~l~ 388 (398)
++ +.||.+.+++.++..++....|++|.+ +++..|+ |.+++.
T Consensus 2054 ~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~ 2098 (2102)
T PLN03200 2054 GK-SSLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQ 2098 (2102)
T ss_pred CC-CCCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEE
Confidence 54 599999999999999888899998853 2344677 999998
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=2.9e-14 Score=115.31 Aligned_cols=88 Identities=27% Similarity=0.521 Sum_probs=74.9
Q ss_pred EeeeeecccCcCCCCCCcEEEEEEcce-----eeEeccccCCCCCceeccEEEEEeecC----CCCeEEEEEEEcc-CCC
Q 015915 270 IVKANNLKNMEMIGKSDPYAVVHIKPL-----FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 270 V~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~L~v~v~d~d-~~~ 339 (398)
.++|++|+..|..|.+||||++++.+. ..++|+++++++||.|| +|.|.+... ..+.|.++|||++ .++
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 469999999999999999999998642 35899999999999999 688776432 2578999999999 889
Q ss_pred CceeEEEEEECcccccccc
Q 015915 340 DKRLGIVKLPLIDLEADTP 358 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~~ 358 (398)
|++||++.++++++.....
T Consensus 85 d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 85 HDLIGEFETTLDELLKSSP 103 (110)
T ss_pred CcEEEEEEEEHHHHhcCCC
Confidence 9999999999999985443
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.50 E-value=1e-13 Score=106.00 Aligned_cols=82 Identities=46% Similarity=0.700 Sum_probs=74.0
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEccee--eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF--KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
|+|+|++|++|...+..+..|||+++.+.+.. .++|++++++.+|.|+|+|.|.+.....+.|.|+|||++ .++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998643 489999999999999999999987777778999999999 888999
Q ss_pred eEEEE
Q 015915 343 LGIVK 347 (398)
Q Consensus 343 lG~~~ 347 (398)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2e-13 Score=134.20 Aligned_cols=117 Identities=26% Similarity=0.463 Sum_probs=100.1
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc--C---
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD--I--- 337 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d--~--- 337 (398)
...++++|..|.+|..+|..|++||||..+++. .+.||+++..++||+|||.|.|..++ .++.++++|||+| .
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~k-tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK-TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecc-cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHH
Confidence 568899999999999999999999999999997 68999999999999999999999998 4679999999988 2
Q ss_pred -------CCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 338 -------GQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 338 -------~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
..|||+|+..+.+..+.. ..+.|+.|.++. .+...+|.|++.+.
T Consensus 372 lrqkl~resddflgqtvievrtlsg--emdvwynlekrt-----dksavsgairlhis 422 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRT-----DKSAVSGAIRLHIS 422 (1283)
T ss_pred HHHHhhhcccccccceeEEEEeccc--chhhhcchhhcc-----chhhccceEEEEEE
Confidence 368999999999988864 567899887642 34556787776655
No 99
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.42 E-value=4.7e-13 Score=133.27 Aligned_cols=124 Identities=23% Similarity=0.330 Sum_probs=111.3
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCce
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKR 342 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~ 342 (398)
...|.|+|.+|+||+..+..|.+||||.+.++....+||.++.+++.|.|.|+|+|.+... -+.|.|.|||+|+++|+.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccccccccc
Confidence 3468899999999999999999999999999987889999999999999999999999763 568999999999999999
Q ss_pred eEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915 343 LGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF 394 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~ 394 (398)
||.+.+.=+++....+++.|+.|.+- ..+....|+|++++. +.+.
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~V-----D~dsEVQG~v~l~l~--~~e~ 127 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPV-----DPDSEVQGKVHLELA--LTEA 127 (800)
T ss_pred cceeeeeHHHHhhCCCCccceecccc-----CCChhhceeEEEEEE--eccc
Confidence 99999999999888889999998752 356778999999999 7654
No 100
>PLN02270 phospholipase D alpha
Probab=99.35 E-value=8.4e-12 Score=128.82 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=104.9
Q ss_pred CcEEEEEEeeeeecccCc------------------CCCCCCcEEEEEEcceeeEeccccCCC-CCceeccEEEEEeecC
Q 015915 263 QGKVAVTIVKANNLKNME------------------MIGKSDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAEDK 323 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~ 323 (398)
.|.|.|+|.+|++|++.+ ..+.+||||.+.+++....||+++.+. .||.|+|+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 799999999999998631 125789999999998788999999884 6999999999999875
Q ss_pred CCCeEEEEEEEccCCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeecccC
Q 015915 324 ETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNLF 397 (398)
Q Consensus 324 ~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~~ 397 (398)
. ..+.|.|.|.|.-...+||.+.+|+.++..+...+.|+++...- .+..+..-+|+++++ |+|+...
T Consensus 87 ~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----~~p~~~~~~~~~~~~--f~~~~~~ 153 (808)
T PLN02270 87 A-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDND----KNPIHGGSKIHVKLQ--YFEVTKD 153 (808)
T ss_pred c-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCC----CCcCCCCCEEEEEEE--EEEcccC
Confidence 4 68999999999445569999999999999988899999987531 011122348999999 9998764
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.34 E-value=9.5e-12 Score=97.58 Aligned_cols=93 Identities=45% Similarity=0.662 Sum_probs=81.4
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcce--eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCce
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPL--FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~ 342 (398)
+.|+|++|++|...+..+..+|||.+++.+. ...+|+++.++.||.|||+|.|.+.....+.+.++|||++ .+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999988776578899999999874 4789999999999999999999998755789999999999 777999
Q ss_pred eEEEEEECcccccccc
Q 015915 343 LGIVKLPLIDLEADTP 358 (398)
Q Consensus 343 lG~~~i~l~~l~~~~~ 358 (398)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999876543
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.33 E-value=1.4e-11 Score=96.28 Aligned_cols=99 Identities=44% Similarity=0.665 Sum_probs=84.4
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLG 344 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG 344 (398)
|.|+|++|++|......+..+|||.+.+.+...++|+++.++.||.||+.|.|.+.......+.++||+++ .++++++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 46899999999886667889999999998746789999999999999999999998645678999999999 77799999
Q ss_pred EEEEECcccc-cccccceEEe
Q 015915 345 IVKLPLIDLE-ADTPKEAELR 364 (398)
Q Consensus 345 ~~~i~l~~l~-~~~~~~~~~~ 364 (398)
.+.+++.++. .......|++
T Consensus 81 ~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 81 EVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred EEEEeHHHhhhcCCcCcceec
Confidence 9999999998 4444555654
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.31 E-value=4.9e-12 Score=132.65 Aligned_cols=126 Identities=24% Similarity=0.329 Sum_probs=106.9
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~ 339 (398)
.+.|-|+|.+..|.||+..|.+|.+||||++.+.....++|+++++|+||+|||++.+.+.......+++.|+|+| ..+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~k 1116 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEK 1116 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCC
Confidence 4689999999999999999999999999999998867899999999999999999999998767789999999999 899
Q ss_pred CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeeeec
Q 015915 340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSF 394 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~ 394 (398)
++.||.+.++|+.+..+.......++-.. ......|.++.... |.+.
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk------~~~~~~g~~~~~~~--~r~~ 1163 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGK------TFIVLDGTLHPGFN--FRSK 1163 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCc------ceEecccEeeccee--cchh
Confidence 99999999999999988776666655321 12344677776666 5553
No 104
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.31 E-value=1.4e-11 Score=95.70 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=73.2
Q ss_pred HHHHHhHhh-hHH-HHHHHHHHHhHHHHHHh-cCCCCcceEEEeEEecCCCCCeeeeEEEEEc-CCCeEEEEEEEEEeCC
Q 015915 74 NKELSKLWP-FVA-DAAELVIKESVEPLLEE-YRPPGITSLKFSKLSLGNVAPKIEGIRVQSL-KQGQITMDIDFRWGGD 149 (398)
Q Consensus 74 N~~l~~~Wp-~~~-~~~~~~~~~~l~~~l~~-~~p~~~~~i~~~~~~lG~~pP~i~~ir~~~~-~~~~~~ld~~~~~~~~ 149 (398)
|.+++|++- +.+ +++.+.+++.|+..|++ .+|+|+++|++++++||+.||.|+++++.+. .++++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 677888665 333 58889999999999998 4599999999999999999999999999764 4556999999999999
Q ss_pred CcEEEEEEe
Q 015915 150 PSIILGVEA 158 (398)
Q Consensus 150 ~~i~l~~~~ 158 (398)
..+.++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 999998765
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.29 E-value=2.2e-11 Score=100.77 Aligned_cols=92 Identities=25% Similarity=0.280 Sum_probs=77.3
Q ss_pred EEEEEeeeeecccCc--CCC--CCCcEEEEEEcc--eeeEeccccCCCCC--ceeccEEEEEeecC--------------
Q 015915 266 VAVTIVKANNLKNME--MIG--KSDPYAVVHIKP--LFKVKTNVVDNNLN--PVWNQTFELIAEDK-------------- 323 (398)
Q Consensus 266 L~V~V~~a~~L~~~d--~~g--~~dpyv~v~~~~--~~~~kT~~~~~t~n--P~Wne~f~~~v~~~-------------- 323 (398)
|+|.|.+|++++..+ ..| .+||||+..+.+ ..+++|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999965443 356 499999999976 36789999999999 99999999887541
Q ss_pred ---------CCCeEEEEEEEcc-CCCCceeEEEEEECccccccc
Q 015915 324 ---------ETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADT 357 (398)
Q Consensus 324 ---------~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~ 357 (398)
....|.++|||.| +++|+++|.+.+++..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2457899999999 999999999999999887654
No 106
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.9e-11 Score=118.08 Aligned_cols=109 Identities=34% Similarity=0.446 Sum_probs=89.7
Q ss_pred cccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEE
Q 015915 256 SELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLI 329 (398)
Q Consensus 256 ~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~ 329 (398)
+..|.++.|.|+|.|++|++|..++..+.+||||++++.. ..+++|.++++++||.|||+|.|.+.. ...-.+.
T Consensus 290 sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~ 369 (421)
T KOG1028|consen 290 SLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLE 369 (421)
T ss_pred EEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEE
Confidence 3446788999999999999999999999999999999843 346899999999999999999998863 3344688
Q ss_pred EEEEEcc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 330 FEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 330 v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
++|||+| .+++++||.+.+.... .+....+|.+..
T Consensus 370 l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 370 LTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred EEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 9999999 9999999998888766 333355665543
No 107
>PLN02223 phosphoinositide phospholipase C
Probab=99.14 E-value=2.2e-10 Score=114.08 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=82.4
Q ss_pred CcEEEEEEeeeeeccc-----CcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEE
Q 015915 263 QGKVAVTIVKANNLKN-----MEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVF 333 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~-----~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~ 333 (398)
...|.|+|+.|++++. .+.....||||++.+.+ ..+++|.+..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999998741 12235679999999854 23567888888999999999999999888778999999
Q ss_pred Ecc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 334 DKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 334 d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
|+| ..+|+++|++.+|+.++..|- ...+|.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 999 788999999999999998764 344554
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.12 E-value=6.9e-10 Score=112.75 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=83.8
Q ss_pred CcEEEEEEeeeeecccC------cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915 263 QGKVAVTIVKANNLKNM------EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~------d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v 332 (398)
...|.|+|+.|.+++.. +.....||||++.+-+ ..+.+|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999887431 1223459999999854 2467999999999999999999999887777899999
Q ss_pred EEcc-CCCCceeEEEEEECcccccccccceEEeccc
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLP 367 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 367 (398)
||+| .++|+++|++.+|++.+..|- .+++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 9999 788999999999999999875 3677753
No 109
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.06 E-value=2.5e-11 Score=121.17 Aligned_cols=123 Identities=26% Similarity=0.511 Sum_probs=101.5
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce------------------------------eeEeccccCCCCCc
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------------------------------FKVKTNVVDNNLNP 310 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------------------------------~~~kT~~~~~t~nP 310 (398)
+|.-.+.|.+.+|+||.++|.+|.||||+...+.+. -.+-|+++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 355567788899999999999999999999876320 01457888999999
Q ss_pred eeccEEEEEeecCCCCeEEEEEEEcc-C---------------------------------CC---CceeEEEEEECccc
Q 015915 311 VWNQTFELIAEDKETQSLIFEVFDKD-I---------------------------------GQ---DKRLGIVKLPLIDL 353 (398)
Q Consensus 311 ~Wne~f~~~v~~~~~~~L~v~v~d~d-~---------------------------------~~---d~~lG~~~i~l~~l 353 (398)
.|+|.|.|.+.+..++.+++.+||+| - +. |||+|.+.+|+.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 99999999999988899999999977 2 11 89999999999999
Q ss_pred ccccccceEEecccccccccccCCCcccEEEEEEee
Q 015915 354 EADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGA 389 (398)
Q Consensus 354 ~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~ 389 (398)
... +.+.||+|.++ +..++..|++++.+.+
T Consensus 271 P~~-Gld~WFkLepR-----S~~S~VqG~~~LklwL 300 (1103)
T KOG1328|consen 271 PPD-GLDQWFKLEPR-----SDKSKVQGQVKLKLWL 300 (1103)
T ss_pred Ccc-hHHHHhccCcc-----cccccccceEEEEEEE
Confidence 765 56789999864 4667789999999983
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.06 E-value=5.4e-10 Score=87.15 Aligned_cols=87 Identities=22% Similarity=0.427 Sum_probs=74.8
Q ss_pred EEEEEeeeeecccCc---CCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCce
Q 015915 266 VAVTIVKANNLKNME---MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKR 342 (398)
Q Consensus 266 L~V~V~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~ 342 (398)
|.|+|.+|+|+...+ +.+.+||||.++++...+.||++ +.||.|||+|.|.+. ....+.+.|||+.....-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeecc
Confidence 578999999998877 67889999999999877889986 489999999999995 4679999999987666678
Q ss_pred eEEEEEECccccccc
Q 015915 343 LGIVKLPLIDLEADT 357 (398)
Q Consensus 343 lG~~~i~l~~l~~~~ 357 (398)
+|..-+.++++..+.
T Consensus 76 i~llW~~~sdi~Ee~ 90 (109)
T cd08689 76 VGLLWLRLSDIAEEI 90 (109)
T ss_pred eeeehhhHHHHHHHH
Confidence 999999999987643
No 111
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.98 E-value=3e-10 Score=113.60 Aligned_cols=98 Identities=31% Similarity=0.449 Sum_probs=86.4
Q ss_pred cccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce------eeEeccccCCCCCceeccEEEEEeecC----CCCe
Q 015915 258 LELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL------FKVKTNVVDNNLNPVWNQTFELIAEDK----ETQS 327 (398)
Q Consensus 258 ~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~kT~~~~~t~nP~Wne~f~~~v~~~----~~~~ 327 (398)
.|......|.|.|+.|+++.+.|.+|.|||||++.+.+. ..++|+++++|+||+|+|+|+|.|... +...
T Consensus 941 ~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am 1020 (1103)
T KOG1328|consen 941 YYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAM 1020 (1103)
T ss_pred EeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccce
Confidence 344677889999999999999999999999999999873 347999999999999999999999643 3557
Q ss_pred EEEEEEEcc-CCCCceeEEEEEECccccc
Q 015915 328 LIFEVFDKD-IGQDKRLGIVKLPLIDLEA 355 (398)
Q Consensus 328 L~v~v~d~d-~~~d~~lG~~~i~l~~l~~ 355 (398)
+.++|+|+| ...+||-|++.+.|+++..
T Consensus 1021 ~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1021 LHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEEeeccceecccccchHHHHhhCCCCC
Confidence 899999999 9999999999999999864
No 112
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.95 E-value=2.9e-09 Score=108.06 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=79.5
Q ss_pred CcEEEEEEeeeeeccc--C----cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915 263 QGKVAVTIVKANNLKN--M----EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~--~----d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v 332 (398)
..+|.|+|+.+.+++. . +.....||||++.+-+ ..+.+|++..++.||.|||+|.|.+.-++-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998642 1 2234579999999853 2357888889999999999999999888778899999
Q ss_pred EEcc-CCCCceeEEEEEECccccccc
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADT 357 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~ 357 (398)
+|+| ..+|+|+|++.+|+.+|..|-
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy 573 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI 573 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc
Confidence 9999 789999999999999998764
No 113
>PLN02352 phospholipase D epsilon
Probab=98.95 E-value=7.5e-09 Score=107.01 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=94.2
Q ss_pred CcEEEEEEeeeeecccC----cCC-CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccC
Q 015915 263 QGKVAVTIVKANNLKNM----EMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDI 337 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~ 337 (398)
+|.|.++|.+|+-+... +.. ...||||.+.+++....|| .+..||.|+|+|.+++.......+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 79999999999854322 111 1239999999998777888 566699999999999987654579999988
Q ss_pred CCCceeEEEEEECcccccccc-cceEEecccccccccccCCCcc-cEEEEEEeeeeeecccC
Q 015915 338 GQDKRLGIVKLPLIDLEADTP-KEAELRLLPSLDMLKIKDKKDR-GSITVKVGASKHSFNLF 397 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~-G~I~l~l~~~y~P~~~~ 397 (398)
...+||++.+|+.++..+.. .+.|+++... .++... .+|+++++ |+|+.+.
T Consensus 83 -~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~------~~~p~~~~~~~~~~~--~~~~~~~ 135 (758)
T PLN02352 83 -KCSILGRFHIQAHQIVTEASFINGFFPLIME------NGKPNPELKLRFMLW--FRPAELE 135 (758)
T ss_pred -CCeEEEEEEEEHHHhhCCCcccceEEEcccC------CCCCCCCCEEEEEEE--EEEhhhC
Confidence 37899999999999988766 8899998753 222223 49999999 9998764
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=98.95 E-value=1.1e-08 Score=103.34 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=94.8
Q ss_pred CcEEEEEEeeeeeccc---C---cCCCCCCcEEEEEEcc----eeeEeccccCCCCCcee-ccEEEEEeecCCCCeEEEE
Q 015915 263 QGKVAVTIVKANNLKN---M---EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVW-NQTFELIAEDKETQSLIFE 331 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~---~---d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~W-ne~f~~~v~~~~~~~L~v~ 331 (398)
...|+|+|++|++|+. . +.....||||++.+.+ ..+++|++++++.||.| ||+|.|.+..++-..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 1 1223479999999853 24579999999999999 9999999988877889999
Q ss_pred EEEcc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCC-cccEEEEEEeeeeeecccCC
Q 015915 332 VFDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKK-DRGSITVKVGASKHSFNLFK 398 (398)
Q Consensus 332 v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~-~~G~I~l~l~~~y~P~~~~~ 398 (398)
|+|+| .+.|+++|++.+|++.+..|-. ..+|... .+.. ...+|.+.+. +.|-..|+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~------~G~~l~~atLfv~~~--~~~~~~~~ 567 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDR------AGKAYKNTRLLVSFA--LDPPYTFR 567 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCC------CCCCCCCeEEEEEEE--EcCccccC
Confidence 99999 8899999999999999977532 3455431 2222 3467888888 77765543
No 115
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.91 E-value=6.4e-09 Score=105.41 Aligned_cols=95 Identities=25% Similarity=0.329 Sum_probs=78.9
Q ss_pred CcEEEEEEeeeeecc----cC--cCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEE
Q 015915 263 QGKVAVTIVKANNLK----NM--EMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEV 332 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~----~~--d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v 332 (398)
...|.|+|+.+.+++ .. +.....||||++.+.+ ..+.+|+++.++.||.|||+|+|.+..++-..++|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998742 11 1234579999999853 2467899999999999999999999887778899999
Q ss_pred EEcc-CCCCceeEEEEEECccccccc
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADT 357 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~ 357 (398)
+|+| ...|+++|++.+|++.+..|-
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy 556 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGI 556 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCcc
Confidence 9999 788999999999999998764
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-08 Score=103.79 Aligned_cols=116 Identities=28% Similarity=0.422 Sum_probs=88.4
Q ss_pred EEEEEEeeeeecccC-c---CCCCCCcEEEEEEcc----eeeEecc-ccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915 265 KVAVTIVKANNLKNM-E---MIGKSDPYAVVHIKP----LFKVKTN-VVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK 335 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~-d---~~g~~dpyv~v~~~~----~~~~kT~-~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~ 335 (398)
+|.|+|.++++.... + ....+||||.+++.+ ..+.+|+ +..++-||.|+|+|+|.+..++-.-++|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 699999999965543 2 235689999999854 2457888 567799999999999999998888999999999
Q ss_pred c-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 336 D-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 336 d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
| .++|||+|+..+|++++..|-.+ .+|... ....-..-+|-+.++
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~-----~G~~~~~asLfv~i~ 742 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSR-----EGEALSSASLFVRIA 742 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCC-----CCccccceeEEEEEE
Confidence 9 88999999999999999876432 344321 111223456666666
No 117
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.79 E-value=8.5e-09 Score=103.40 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=97.5
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcce---eeEeccccCCCCCceeccEEEEEeecC---------------CCC
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL---FKVKTNVVDNNLNPVWNQTFELIAEDK---------------ETQ 326 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~kT~~~~~t~nP~Wne~f~~~v~~~---------------~~~ 326 (398)
-+.+++.+++++.+.+ ++.+|||+.+...+. ...+|++++.|.+|.|+|.|+|.+... ...
T Consensus 132 ~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 132 GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 3444455566665554 466999999988642 236899999999999999999988543 345
Q ss_pred eEEEEEEE-cc-CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEeeeee
Q 015915 327 SLIFEVFD-KD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKH 392 (398)
Q Consensus 327 ~L~v~v~d-~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~ 392 (398)
.+++++|+ .+ ...++|+|++.+++..+........|+.|.+..+..+..++..-|.+++.++ |.
T Consensus 211 ~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~--y~ 276 (800)
T KOG2059|consen 211 EIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT--YT 276 (800)
T ss_pred eEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEE--ee
Confidence 78899999 44 6679999999999999987667789999998876666566777899999999 75
No 118
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.79 E-value=1.8e-08 Score=102.10 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=78.4
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEEcc-----eeeEeccccCCCCCceec-cEEEEEeecCCCCeEEEEEEEcc-
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP-----LFKVKTNVVDNNLNPVWN-QTFELIAEDKETQSLIFEVFDKD- 336 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~~~~~L~v~v~d~d- 336 (398)
-.|.|.|+.|++|+..+ .|-..|||++.+-+ ...++|.+..|++||+|| |.|+|.+.+++-..|++.|+|.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999554 45667999999843 234556677899999999 99999999998889999999999
Q ss_pred CCCCceeEEEEEECcccccc
Q 015915 337 IGQDKRLGIVKLPLIDLEAD 356 (398)
Q Consensus 337 ~~~d~~lG~~~i~l~~l~~~ 356 (398)
++...|||+|..|+..+..+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCcceeeeeecchhhhhcc
Confidence 88888999999999998765
No 119
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.65 E-value=7.2e-08 Score=94.66 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=96.1
Q ss_pred CcEEEEEEeeeeecccCcCC-CCCCcEEEEEEcceeeEeccccCCCCCceec-cEEEEEeecC--CCCeEEEEEEEcc-C
Q 015915 263 QGKVAVTIVKANNLKNMEMI-GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWN-QTFELIAEDK--ETQSLIFEVFDKD-I 337 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wn-e~f~~~v~~~--~~~~L~v~v~d~d-~ 337 (398)
-|.|-|+|..|++|+-+|.. ...|.||++++.. ..+||.+..+++||.|| +.|.|.+.+. .+..|.+++.|+| .
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n-~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc-cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 37889999999999998853 4568999999997 68999999999999999 5688888653 4568999999999 9
Q ss_pred CCCceeEEEEEECccccccc----------ccceEEecccccccccccCCCcccEEEEEEe
Q 015915 338 GQDKRLGIVKLPLIDLEADT----------PKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 338 ~~d~~lG~~~i~l~~l~~~~----------~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
+.+|-+|.+.++++.+.-+. ....|++... .-...+|+|.+-+.
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifd-------tihgirgeinvivk 134 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFD-------TIHGIRGEINVIVK 134 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecce-------ecccccceeEEEEE
Confidence 99999999999998875322 2357888754 22346899888776
No 120
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=3.7e-08 Score=91.03 Aligned_cols=138 Identities=26% Similarity=0.359 Sum_probs=101.3
Q ss_pred CccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEE--EEeec-CCCC
Q 015915 254 DTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFE--LIAED-KETQ 326 (398)
Q Consensus 254 d~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~--~~v~~-~~~~ 326 (398)
.+..+|......+..++.+|++|+.++..+..|||+++.+.+ ..+.+|++..+++||.|+|+-. +...+ ....
T Consensus 83 ~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K 162 (362)
T KOG1013|consen 83 EFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLK 162 (362)
T ss_pred hhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhh
Confidence 345566777889999999999999999999999999999875 2347888999999999998643 33332 2345
Q ss_pred eEEEEEEEcc-CCCCceeEEEEEECcccccccccc--eEEecccccccccccCCCcccEEEEEEeeeeee
Q 015915 327 SLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKE--AELRLLPSLDMLKIKDKKDRGSITVKVGASKHS 393 (398)
Q Consensus 327 ~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~--~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P 393 (398)
.+++.+.|.+ +..+++.|+..+++..+.....+. .|+.-..+..........++|+|.+++. |-.
T Consensus 163 ~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~--~~s 230 (362)
T KOG1013|consen 163 VLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLA--YSS 230 (362)
T ss_pred hhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeec--cCc
Confidence 6788999999 889999999999999988766543 2322111111111122367899999998 743
No 121
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.41 E-value=1.6e-07 Score=97.72 Aligned_cols=91 Identities=30% Similarity=0.417 Sum_probs=80.8
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcce-eeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCC
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPL-FKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~ 339 (398)
-...++|+|++|-+|.+.|..|.+|||+.+.+++. ..-++..+.+|+||+|++.|++....+....+.++|||+| .+.
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 34577899999999999999999999999999873 2356778999999999999998888777788999999999 999
Q ss_pred CceeEEEEEECcc
Q 015915 340 DKRLGIVKLPLID 352 (398)
Q Consensus 340 d~~lG~~~i~l~~ 352 (398)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999876
No 122
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.34 E-value=4e-07 Score=95.94 Aligned_cols=105 Identities=23% Similarity=0.307 Sum_probs=88.1
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEE---eecCCCCeEEEEEEE
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELI---AEDKETQSLIFEVFD 334 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~---v~~~~~~~L~v~v~d 334 (398)
..|+|.|-|..|++|.-..-+..+||||+.++.+ ..+.||+++.+|.||+|||..... ........|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 5899999999999996554466789999999976 346899999999999999986533 333445789999999
Q ss_pred cc-CCCCceeEEEEEECcccccccccceEEecc
Q 015915 335 KD-IGQDKRLGIVKLPLIDLEADTPKEAELRLL 366 (398)
Q Consensus 335 ~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 366 (398)
.+ ...+.++|.+.++|.++....+...|+.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 99 889999999999999998877777899874
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=9.2e-06 Score=81.12 Aligned_cols=106 Identities=30% Similarity=0.358 Sum_probs=88.6
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc-c-----eeeEeccccCCCCCceeccEEEEEeec---CCCCeEEEEE
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK-P-----LFKVKTNVVDNNLNPVWNQTFELIAED---KETQSLIFEV 332 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~-~-----~~~~kT~~~~~t~nP~Wne~f~~~v~~---~~~~~L~v~v 332 (398)
....++|+|+.|.+|+-. ..|.-.||+.+.+- + .+++.|+++.++-.|.+||+|.|.+.+ ++...|.+.|
T Consensus 1123 gehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1123 GEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred CcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEee
Confidence 345789999999999765 35777899999873 3 356788999999999999999999865 3566899999
Q ss_pred EEcc-CCCCceeEEEEEECcccccccccceEEecccc
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRLLPS 368 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 368 (398)
.|+. ...|..+|.+.++|.++...++...|++|..+
T Consensus 1202 KDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRR 1238 (1283)
T ss_pred hhheeecccceeeeeeeehhhHhhcCceeEeeecccc
Confidence 9999 77888999999999999998888899998653
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=3.3e-06 Score=78.29 Aligned_cols=89 Identities=26% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeec--CCCCeEEEEEEE
Q 015915 261 KPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVFD 334 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v~v~d 334 (398)
....-+.|++++|.+|..+|.+|.+|||+..++.+ .-+++|++.++++||.||++|.+.+.. .....+.+.+||
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence 45677899999999999999999999999999865 246789999999999999999888753 345688999999
Q ss_pred cc-CCCCceeEEEEEE
Q 015915 335 KD-IGQDKRLGIVKLP 349 (398)
Q Consensus 335 ~d-~~~d~~lG~~~i~ 349 (398)
.+ .+..+++|-....
T Consensus 310 ~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLG 325 (362)
T ss_pred cCCCcCccCCCccccc
Confidence 99 6678888875543
No 125
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.04 E-value=2.7e-05 Score=78.33 Aligned_cols=231 Identities=17% Similarity=0.276 Sum_probs=150.6
Q ss_pred cCCCCcceeCCCCcchHHH---------HHHHHhHhhh--HHHHHHHHHHHhH----HHHHHhcC-CCCcceEEEeEEec
Q 015915 55 GDNFPVWISFPVYEQVKWL---------NKELSKLWPF--VADAAELVIKESV----EPLLEEYR-PPGITSLKFSKLSL 118 (398)
Q Consensus 55 ~~~~p~w~~~~d~E~~~Wl---------N~~l~~~Wp~--~~~~~~~~~~~~l----~~~l~~~~-p~~~~~i~~~~~~l 118 (398)
+...|.|... .|.-+|+ |.++...+.- ...+....+.+.+ +..+.... ..-++.+.+.++.+
T Consensus 79 ~~~~~t~~~~--~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elEl 156 (1051)
T KOG3532|consen 79 PEELRTFLKS--GEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELEL 156 (1051)
T ss_pred cccccccccc--cccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhh
Confidence 3457888886 3344454 4555554431 1222223333333 33333322 23689999999999
Q ss_pred CCCCCeeeeEEEEEcC------------C-------------CeEEEEEEEEEeCCCcEEEEEEeeeeeeEEEEEEEEEE
Q 015915 119 GNVAPKIEGIRVQSLK------------Q-------------GQITMDIDFRWGGDPSIILGVEAAMVASIPIQLKDLQV 173 (398)
Q Consensus 119 G~~pP~i~~ir~~~~~------------~-------------~~~~ld~~~~~~~~~~i~l~~~~~~~~~~~v~v~~l~~ 173 (398)
|.+.|.+++.+++..+ + ..+.+=.|+.|.|+..-++.+....+..-.+.|+-.+.
T Consensus 157 g~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l 236 (1051)
T KOG3532|consen 157 GTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKL 236 (1051)
T ss_pred ccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEe
Confidence 9999999999997621 1 12345578889998877777666444445566777889
Q ss_pred EEEEEEEEEecCCCCccceEEEEeecCCcceEEEEEeecCcCccccccHHHHHHHHHHHHHhhhcCCCCeeee--ecCC-
Q 015915 174 FTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVV--PIGG- 250 (398)
Q Consensus 174 ~g~~Rv~~~l~~~~P~~~~~~vsf~~~P~p~id~~~~~~g~~~~~iP~l~~~i~~~i~~~i~~~~v~P~~~~i--pl~~- 250 (398)
+|.+|+.+.. .|+ ..++++|.+.|..+.|...+..|-.+.. .+.+.|.+.++..+.....||++.-- |...
T Consensus 237 ~Gm~r~~~~r---~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~ 310 (1051)
T KOG3532|consen 237 TGMVRVILSR---QPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPN 310 (1051)
T ss_pred ccceeEEEEe---ccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccC
Confidence 9999999852 344 6789999999766666666555443433 35677888888899999999995421 1110
Q ss_pred ----C-CcCccccccCCCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc
Q 015915 251 ----I-PVDTSELELKPQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP 295 (398)
Q Consensus 251 ----~-~~d~~~~~~~~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~ 295 (398)
. +.+.+..-..+.|.+.|++.++..|... .++..-||.+.+.+
T Consensus 311 ~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 311 PIFQASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred cccccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 0 1112222236799999999999877654 47888999998864
No 126
>PLN02964 phosphatidylserine decarboxylase
Probab=97.94 E-value=1.3e-05 Score=82.71 Aligned_cols=90 Identities=23% Similarity=0.374 Sum_probs=74.6
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCC
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQD 340 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d 340 (398)
-.|+..+++++|+ ++ ..|+|..+-.-+.+.+||.+.++|+||+||+...|.+...+....++.|||++ ++++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 4799999999997 33 35887666544447999999999999999999999887666666799999999 9999
Q ss_pred ceeEEEEEECcccccccc
Q 015915 341 KRLGIVKLPLIDLEADTP 358 (398)
Q Consensus 341 ~~lG~~~i~l~~l~~~~~ 358 (398)
+.+|.+.+++.++...+.
T Consensus 125 ~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 125 TLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HhhhheeecHhhccHHHH
Confidence 999999999888765443
No 127
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.84 E-value=3.9e-05 Score=76.45 Aligned_cols=114 Identities=25% Similarity=0.443 Sum_probs=78.9
Q ss_pred EeeeeecccCcCCCCCCcEEEEEEc--c---eeeEeccccCCCCCceeccEEEEEeec----CCCCeEEEEEEEcc-CCC
Q 015915 270 IVKANNLKNMEMIGKSDPYAVVHIK--P---LFKVKTNVVDNNLNPVWNQTFELIAED----KETQSLIFEVFDKD-IGQ 339 (398)
Q Consensus 270 V~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~kT~~~~~t~nP~Wne~f~~~v~~----~~~~~L~v~v~d~d-~~~ 339 (398)
..+|++|.++|.++++|||..++-. . ...++|.++++++||.|.+ |.+.... .....+.+.+||++ .++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999998753 1 2458999999999999997 3333321 23467889999999 888
Q ss_pred CceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEE
Q 015915 340 DKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITV 385 (398)
Q Consensus 340 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l 385 (398)
++++|.+..++.++.. ........+.......++++.+..|++.+
T Consensus 221 ~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~~g~~~l 265 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE-PGSPNQIMLINPKKKAKKKSYKNSGQLIL 265 (529)
T ss_pred cCceeEecccHHHhcc-cCCcccccccChhhhhhhhcccccceEEe
Confidence 9999999999999876 23333333322222122233345666554
No 128
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.68 E-value=7.7e-05 Score=60.39 Aligned_cols=99 Identities=24% Similarity=0.382 Sum_probs=72.8
Q ss_pred EEEEEeeeeecccCc---------C----CCCCCcEEEEEEc---ceeeEeccccCCCCCceeccEEEEEee--------
Q 015915 266 VAVTIVKANNLKNME---------M----IGKSDPYAVVHIK---PLFKVKTNVVDNNLNPVWNQTFELIAE-------- 321 (398)
Q Consensus 266 L~V~V~~a~~L~~~d---------~----~g~~dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~~~v~-------- 321 (398)
|.|.|++|.+|+... . .-.-++|+++.+. ..+..+|+++.++.-|.|+.+++|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888886421 1 1225899999864 345789999999999999999999874
Q ss_pred c-------CCCCeEEEEEEEcc-C----------CCCceeEEEEEECcccccc-cccceEEe
Q 015915 322 D-------KETQSLIFEVFDKD-I----------GQDKRLGIVKLPLIDLEAD-TPKEAELR 364 (398)
Q Consensus 322 ~-------~~~~~L~v~v~d~d-~----------~~d~~lG~~~i~l~~l~~~-~~~~~~~~ 364 (398)
. .+...+.++||..+ . .+|-.||.+.+|+.++... .+...|++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 1 23457889999876 2 2355899999999998753 34567775
No 129
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.21 E-value=7.2e-05 Score=78.46 Aligned_cols=102 Identities=26% Similarity=0.283 Sum_probs=78.6
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeec---------CCCCeEEEEE
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED---------KETQSLIFEV 332 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~---------~~~~~L~v~v 332 (398)
..-.++++|.+|+.|...|..+.+|||+.+..-+ +.+.|.++.+|+||.|+++..|.--. ..-..+.+++
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~-qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG-QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc-ccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 4556788899999999999999999999998877 57899999999999999987664211 1124678999
Q ss_pred EEcc-CCCCceeEEEEEECcccccccccceEEec
Q 015915 333 FDKD-IGQDKRLGIVKLPLIDLEADTPKEAELRL 365 (398)
Q Consensus 333 ~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 365 (398)
||.| .+.++++|+......-... ...-.|++.
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~ 315 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPT 315 (1105)
T ss_pred ehhhhhchHHhhcccccceEEEec-CCccceEEe
Confidence 9999 9999999998765444433 233345554
No 130
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.16 E-value=0.00056 Score=51.55 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=66.0
Q ss_pred EEEEeeeeecccCcCCCC-CCcEEEE--EEcceeeEeccccCCCCCceeccEEEEEeec--CCCCeEEEEEEEccCCCCc
Q 015915 267 AVTIVKANNLKNMEMIGK-SDPYAVV--HIKPLFKVKTNVVDNNLNPVWNQTFELIAED--KETQSLIFEVFDKDIGQDK 341 (398)
Q Consensus 267 ~V~V~~a~~L~~~d~~g~-~dpyv~v--~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~--~~~~~L~v~v~d~d~~~d~ 341 (398)
-++++.|+||.-....|. ..-|++= .+.+...+||++.....||+|.|+|.|.+.- ...-.|-++|+. ...+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 478899999865443332 2234432 3333356899999999999999999987743 334567788887 466778
Q ss_pred eeEEEEEECcccccccccceEE
Q 015915 342 RLGIVKLPLIDLEADTPKEAEL 363 (398)
Q Consensus 342 ~lG~~~i~l~~l~~~~~~~~~~ 363 (398)
.+|.+.+.++++..+ +.++|.
T Consensus 81 ~iG~~sL~l~s~gee-E~~HW~ 101 (103)
T cd08684 81 TIGECSLSLRTLSTQ-ETDHWL 101 (103)
T ss_pred eeeEEEeecccCCHH-Hhhhhh
Confidence 999999999998654 334454
No 131
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.00082 Score=63.78 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=84.0
Q ss_pred CCCcEEEEEEeeeeecccCcC-CCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEc
Q 015915 261 KPQGKVAVTIVKANNLKNMEM-IGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK 335 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~-~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~ 335 (398)
...|.+.|.+++|++|..+.. ...++|||++++.+ ..+.+|+...+|++|-+.....|.-.. ....|.+.+|..
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEEecc
Confidence 468999999999999976542 34689999999854 245688888899999777766665544 467899999953
Q ss_pred c--CCCCceeEEEEEECccccccc-ccceEEecccc
Q 015915 336 D--IGQDKRLGIVKLPLIDLEADT-PKEAELRLLPS 368 (398)
Q Consensus 336 d--~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 368 (398)
- ...+.|+|.+.+-++++.... ....|+++.+.
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 3 777889999999999998766 56789998753
No 132
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.81 E-value=0.0012 Score=63.24 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=87.1
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEc----ceeeEeccccCCCCCceeccEEEEEeecC-----------CCC
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIK----PLFKVKTNVVDNNLNPVWNQTFELIAEDK-----------ETQ 326 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-----------~~~ 326 (398)
....|++.|+++.+++.....--.|-|+.+..- ..++.+|.++++|.+|.|+|.|.+.+..- ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 455677778888877644322234667776542 23567899999999999999999988541 123
Q ss_pred eEEEEEEEcc--CCCCceeEEEEEECcccccccccceEEecccccccccccCCCcccEEEEEEe
Q 015915 327 SLIFEVFDKD--IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 327 ~L~v~v~d~d--~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
.+.|++|.+. +.+|.++|.+.+.+.-|...-.....++|.. ..+...|.+.+++.
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-------GRK~vGGkLevKvR 501 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-------GRKAVGGKLEVKVR 501 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-------cccccCCeeEEEEE
Confidence 6889999998 7889999999999999987666666777653 22334678777776
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.64 E-value=0.036 Score=47.03 Aligned_cols=127 Identities=10% Similarity=0.118 Sum_probs=87.0
Q ss_pred CCcEEEEEEeeeeecccC-c-CCCCCCcEEEEE--EcceeeEeccccCCCCCceeccEEEEEeecCC-------------
Q 015915 262 PQGKVAVTIVKANNLKNM-E-MIGKSDPYAVVH--IKPLFKVKTNVVDNNLNPVWNQTFELIAEDKE------------- 324 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~-d-~~g~~dpyv~v~--~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~------------- 324 (398)
....|+++|..++-.... + ..+..+.-..++ +++ ++++|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~-QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG-QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC-ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 455688888887743221 1 113444444444 455 7999999999999999999999985432
Q ss_pred CCeEEEEEEEcc-CCCCceeEEEEEECccccccccc--ceEEecccccccccccCCCcccEEEEEEeeeeeecc
Q 015915 325 TQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPK--EAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFN 395 (398)
Q Consensus 325 ~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~ 395 (398)
.+.+++.|...| .+...++|.-.++...+...+.. ....+|... ....+...|.+.+++. ..|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----~~e~kv~~GiL~l~lE--LlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----GPESKVPVGILDLRLE--LLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc----CCCCccceeEEEEEEE--eecCC
Confidence 346778888777 55668999999999988776654 444555431 1122346899999999 77753
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.36 E-value=0.091 Score=45.02 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=60.1
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFD 334 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d 334 (398)
...++|+|++++++.-.+ .+|-|+.+.+ ++.. ...|+.+.. .++.|||...|.+. + +....|.+++|+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 356889999999887543 4678888865 3311 123443333 67999999888763 2 345689999999
Q ss_pred cc-CC----CCceeEEEEEECcccc
Q 015915 335 KD-IG----QDKRLGIVKLPLIDLE 354 (398)
Q Consensus 335 ~d-~~----~d~~lG~~~i~l~~l~ 354 (398)
.. .. ....+|.+.++|-+..
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCC
Confidence 76 22 2246999999997744
No 135
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.82 E-value=0.016 Score=58.23 Aligned_cols=84 Identities=29% Similarity=0.409 Sum_probs=62.3
Q ss_pred eEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-----CCCCceeEEEEEECcccccccccceEEecccccccc
Q 015915 298 KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-----IGQDKRLGIVKLPLIDLEADTPKEAELRLLPSLDML 372 (398)
Q Consensus 298 ~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-----~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 372 (398)
..+|.++.+.+||.|.+.|.+....+..|.++++++|.+ ...++|+|++...++.+........-+.+.+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 458999999999999999988887778899999999977 3567899999999999886544332222221
Q ss_pred cccCCCcccEEEEEEe
Q 015915 373 KIKDKKDRGSITVKVG 388 (398)
Q Consensus 373 ~~~~~~~~G~I~l~l~ 388 (398)
......|+|.++..
T Consensus 117 --~~~~~~g~iti~ae 130 (529)
T KOG1327|consen 117 --GKNAGSGTITISAE 130 (529)
T ss_pred --CccCCcccEEEEee
Confidence 12334567766654
No 136
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.82 E-value=0.019 Score=60.14 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=66.8
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc------eeeEeccccC-CCCCceeccE-EEEE-eecCCCCeEEEEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVD-NNLNPVWNQT-FELI-AEDKETQSLIFEVF 333 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~kT~~~~-~t~nP~Wne~-f~~~-v~~~~~~~L~v~v~ 333 (398)
.+.+.|+|+++.-|..++ ...||.+.+-+ ...+||+++. ++.||+|+|+ |.|. |--++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 578899999999997654 45899998742 2457888765 5899999975 5554 22234568999999
Q ss_pred EccCCCCceeEEEEEECcccccc
Q 015915 334 DKDIGQDKRLGIVKLPLIDLEAD 356 (398)
Q Consensus 334 d~d~~~d~~lG~~~i~l~~l~~~ 356 (398)
+.. ..++|+-.+|++.+..+
T Consensus 778 eEg---gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred ccC---CceeeeeccchhcccCc
Confidence 964 56999999999999875
No 137
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.65 E-value=0.41 Score=40.02 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=74.0
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEccee--eEecccc-CCCCCceeccEEEEEeec--------CCCCeEEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLF--KVKTNVV-DNNLNPVWNQTFELIAED--------KETQSLIFE 331 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~kT~~~-~~t~nP~Wne~f~~~v~~--------~~~~~L~v~ 331 (398)
.-.+.+++++..+++. ....-|+....+... ..+|+.. ..+-.-.|||+|.+.+.- .....+.+.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3456788888888775 122334444333322 2334332 335567999999877621 133468899
Q ss_pred EEEcc-CCCCceeEEEEEECccccccc--ccceEEecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915 332 VFDKD-IGQDKRLGIVKLPLIDLEADT--PKEAELRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL 396 (398)
Q Consensus 332 v~d~d-~~~d~~lG~~~i~l~~l~~~~--~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~ 396 (398)
|+... .++...+|.+.++|.++.... .....++|.. ..+....++++++ +.+..-
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~--~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK--------CKKSNATLSISIS--LSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEE--EEECcc
Confidence 98875 333369999999999998753 3444555432 1245668888888 766543
No 138
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.52 E-value=0.027 Score=52.42 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred CCCcEEEEEEeeeeecccCcC--CCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-C
Q 015915 261 KPQGKVAVTIVKANNLKNMEM--IGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-I 337 (398)
Q Consensus 261 ~~~g~L~V~V~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~ 337 (398)
.-.|+|.+++..+++|+-... .-.-+-||++..+.+.+.||.+.....--.|.|+|+..+.+ ...+.+-||.|+ -
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence 357999999999999975432 34568899999987777788877777777899999988875 357889999999 5
Q ss_pred CCCcee
Q 015915 338 GQDKRL 343 (398)
Q Consensus 338 ~~d~~l 343 (398)
.++++.
T Consensus 126 ~RHKLC 131 (442)
T KOG1452|consen 126 RRHKLC 131 (442)
T ss_pred hhcccc
Confidence 556543
No 139
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.48 E-value=0.21 Score=48.22 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=83.4
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee-------cCCCCeEEEEEEEcc--
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE-------DKETQSLIFEVFDKD-- 336 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~-------~~~~~~L~v~v~d~d-- 336 (398)
+.|+|.+|++.+... .-.-.+..++.+ ....|..+..+-.|.||......+. ......+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng-~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG-ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC-ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 568899999987652 334566677776 5677888888999999988877663 234668999999988
Q ss_pred CCCCceeEEEEEECccc---ccc--cccceEEecccccccccccCCCcccEEEEEEe
Q 015915 337 IGQDKRLGIVKLPLIDL---EAD--TPKEAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 337 ~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
.++.+.+|.+.++|... ..+ ..+..|++|...- ++-.+.+-+|.+.+.
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~----~~y~~~KPEl~l~l~ 130 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS----SKYKKHKPELLLSLS 130 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccc----cccccCCccEEEEEE
Confidence 66778999999999998 544 3567899998631 122223446666666
No 140
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.20 E-value=0.35 Score=42.17 Aligned_cols=89 Identities=25% Similarity=0.361 Sum_probs=61.0
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEc
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDK 335 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (398)
..++|+|+++.++...+ ...+-|+.+.+ ++.. ...|+.+..+.++.|||...|.+. + +....|.+.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 46789999999987522 34566777644 3321 235555554567999999888763 3 3466899999986
Q ss_pred c-CC----------------CCceeEEEEEECcccc
Q 015915 336 D-IG----------------QDKRLGIVKLPLIDLE 354 (398)
Q Consensus 336 d-~~----------------~d~~lG~~~i~l~~l~ 354 (398)
. .. ++..+|.+.++|-+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 6 22 2468999999987744
No 141
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.00 E-value=0.74 Score=35.24 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=60.1
Q ss_pred CCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECcccccccccceE
Q 015915 283 GKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTPKEAE 362 (398)
Q Consensus 283 g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~ 362 (398)
|.++-.+++.+++.....|.-... .+..|++.|.+.+.. +..|.|.||=+|. ..+-|...+.|++... ..-
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~~----~~~ 77 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQ 77 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhcc----cce
Confidence 447788889998766677765543 578999999999874 6799999998763 2466777788877322 111
Q ss_pred EecccccccccccCCCcccEEEEEEe
Q 015915 363 LRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 363 ~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
.+-.+.|.+..++.
T Consensus 78 ------------~~lepqg~l~~ev~ 91 (98)
T cd08687 78 ------------LDMEPQLCLVAELT 91 (98)
T ss_pred ------------eccccccEEEEEEE
Confidence 22345788888887
No 142
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.46 E-value=0.51 Score=40.25 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=58.8
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEE--cce---eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEc
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDK 335 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~ 335 (398)
..++|++....+....+ ....+-|+.+.+ ++. ....|.......++.|||...|.+. + +....|.+++|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677788877765411 234566666654 332 1223433333468999999888763 2 3456899999998
Q ss_pred c-CC--CCceeEEEEEECcccc
Q 015915 336 D-IG--QDKRLGIVKLPLIDLE 354 (398)
Q Consensus 336 d-~~--~d~~lG~~~i~l~~l~ 354 (398)
+ .+ ++..+|.+.++|-+..
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 8 33 5689999999998754
No 143
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.20 E-value=0.69 Score=39.71 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=50.9
Q ss_pred CCCCcEEEEEE--cce---eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc-CCCCceeEEEEEECccc
Q 015915 283 GKSDPYAVVHI--KPL---FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD-IGQDKRLGIVKLPLIDL 353 (398)
Q Consensus 283 g~~dpyv~v~~--~~~---~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l 353 (398)
..+|-||.+.+ ++. ....|+.+.-+..+.|||...|++. + +.+..|.+++||.+ .++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45677777765 221 1235555555677899999888773 2 34568999999988 55778999999999775
No 144
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.09 E-value=0.68 Score=40.25 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=62.2
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccC----CCCCceeccEEEEEee--c-CCCCeEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVD----NNLNPVWNQTFELIAE--D-KETQSLIF 330 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~----~t~nP~Wne~f~~~v~--~-~~~~~L~v 330 (398)
...+.|+|.++.+++........|-|+.+.+ ++.. ...|+... -...+.|||...|.+. + +....|.+
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4567889999999887654445778888765 3321 12333221 1235779998888763 2 34568999
Q ss_pred EEEEcc-CC---------CCceeEEEEEECcccc
Q 015915 331 EVFDKD-IG---------QDKRLGIVKLPLIDLE 354 (398)
Q Consensus 331 ~v~d~d-~~---------~d~~lG~~~i~l~~l~ 354 (398)
.+|+.. .. ++..+|.+.++|-+..
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999977 33 4578999999997754
No 145
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=90.17 E-value=6 Score=34.22 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=55.5
Q ss_pred CCCCcEEEEEEcceeeEeccccC--CCCCceeccEEEEEeecCCCCeEEEEEEEccCCCCceeEEEEEECccccc
Q 015915 283 GKSDPYAVVHIKPLFKVKTNVVD--NNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEA 355 (398)
Q Consensus 283 g~~dpyv~v~~~~~~~~kT~~~~--~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~ 355 (398)
.+..-|+++.+.++...+|+... ....-.+||.|.+.+... -+.+.+++|......+..|+.+.+|+-....
T Consensus 35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 34567889999887777776543 344457789999999774 4689999999887788999999999866544
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=89.82 E-value=0.86 Score=48.63 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=77.9
Q ss_pred CCcEEEEEEcceeeEeccccCCC-CCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccccccccceE
Q 015915 285 SDPYAVVHIKPLFKVKTNVVDNN-LNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLEADTPKEAE 362 (398)
Q Consensus 285 ~dpyv~v~~~~~~~~kT~~~~~t-~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~~~~~~~~~ 362 (398)
.++|+.+.+......+|....+. .+|.|.+.|+....... ..+.+++-+.+ .+-...+|.+.++...+..+.....|
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhccccccce
Confidence 48899998876556677777666 88999999988777653 47888888888 66588999999999999998777888
Q ss_pred EecccccccccccCCCcccEEEEEEeeeeeeccc
Q 015915 363 LRLLPSLDMLKIKDKKDRGSITVKVGASKHSFNL 396 (398)
Q Consensus 363 ~~L~~~~~~~~~~~~~~~G~I~l~l~~~y~P~~~ 396 (398)
++++.. .. ....+.-.+.+++. |+|+.+
T Consensus 217 ~~Il~~---d~-~~~~~~~~~~~~~~--~~~~~~ 244 (887)
T KOG1329|consen 217 FPILDN---DG-KPHQKGSNESLRLG--FTPMEK 244 (887)
T ss_pred eeeecc---CC-ccccCCcccceEEe--eEeech
Confidence 887642 11 11112235677788 888765
No 147
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=89.38 E-value=3.5 Score=34.47 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=39.7
Q ss_pred eccccCCC-CCceeccEEEEEee--c-CCCCeEEEEEEEcc-CCCC----ceeEEEEEECcccc
Q 015915 300 KTNVVDNN-LNPVWNQTFELIAE--D-KETQSLIFEVFDKD-IGQD----KRLGIVKLPLIDLE 354 (398)
Q Consensus 300 kT~~~~~t-~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d-~~~d----~~lG~~~i~l~~l~ 354 (398)
.|+...-+ .++.|||...|.+. + +....|.++||+.+ ...+ ..||.+.+++-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 56655555 89999999888863 2 35668999999988 4444 69999999998864
No 148
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.04 E-value=3.8 Score=35.79 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=54.7
Q ss_pred cEEEEEEeeeeecccCcCCCCCCcEEEEEE--cce--eeEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc
Q 015915 264 GKVAVTIVKANNLKNMEMIGKSDPYAVVHI--KPL--FKVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD 336 (398)
Q Consensus 264 g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~--~~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d 336 (398)
..++|+|.++.++ ..+......-||.+.+ +.. ...+|+....+.++.|||...|.+. + +....|.+.||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3567888887633 2221222234555533 321 1235555566778999998887763 2 34568999999863
Q ss_pred -C----------------CCCceeEEEEEECcccc
Q 015915 337 -I----------------GQDKRLGIVKLPLIDLE 354 (398)
Q Consensus 337 -~----------------~~d~~lG~~~i~l~~l~ 354 (398)
. .++..||-+.+.|-+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcCC
Confidence 1 12567888999887744
No 149
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=88.74 E-value=2.4 Score=37.24 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=34.6
Q ss_pred eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc--CCCC--ceeEEEEEECcc
Q 015915 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD--IGQD--KRLGIVKLPLID 352 (398)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d--~~~d--~~lG~~~i~l~~ 352 (398)
..+.|.+..++.+|.|+|+|.+.+... ...-|.|++++.. .+++ ..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356788888899999999999888643 3456888999877 2222 699999999988
No 150
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.55 E-value=5.7 Score=35.01 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=41.4
Q ss_pred eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-C-CC-CceeEEEEEECcc
Q 015915 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-I-GQ-DKRLGIVKLPLID 352 (398)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~-~~-d~~lG~~~i~l~~ 352 (398)
..++|.+...+.+|.|+|++.+.+... ...-|.++++... . .+ ....|.+.+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 357888899999999999999888543 3446778777655 2 22 2679999999844
No 151
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=87.26 E-value=4.7 Score=35.68 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=41.4
Q ss_pred eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc--CCCC---ceeEEEEEECc
Q 015915 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD--IGQD---KRLGIVKLPLI 351 (398)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d--~~~d---~~lG~~~i~l~ 351 (398)
..++|.+...+.+|.|+|++.+.+... ...-|.++++... ..+| ...|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 457888888899999999999888543 3456788887755 2333 57899999985
No 152
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=85.71 E-value=4.2 Score=32.33 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=46.9
Q ss_pred EEEEEcceeeEeccccCCCCCceeccEEEEEeecC-------CCCeEEEEEEEccCCCCceeEEEEEECcccccccc--c
Q 015915 289 AVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDK-------ETQSLIFEVFDKDIGQDKRLGIVKLPLIDLEADTP--K 359 (398)
Q Consensus 289 v~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~-------~~~~L~v~v~d~d~~~d~~lG~~~i~l~~l~~~~~--~ 359 (398)
|....-.-+.+.|.++. +.+|.+|-+-.+.|... .+..+.++++..-......+|.+.+++.++....+ .
T Consensus 3 ct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i 81 (107)
T PF11618_consen 3 CTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERI 81 (107)
T ss_dssp EEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--E
T ss_pred EEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceE
Confidence 33333333456777776 88999998887777431 34578999988664446789999999999986544 2
Q ss_pred ceEEecccccccccccCCCcccEEEEEEe
Q 015915 360 EAELRLLPSLDMLKIKDKKDRGSITVKVG 388 (398)
Q Consensus 360 ~~~~~L~~~~~~~~~~~~~~~G~I~l~l~ 388 (398)
.....+.. .++..-|.|...++
T Consensus 82 ~~~~~l~g-------~~~~~~g~l~y~~r 103 (107)
T PF11618_consen 82 HGSATLVG-------VSGEDFGTLEYWIR 103 (107)
T ss_dssp EEEEEE-B-------SSS-TSEEEEEEEE
T ss_pred EEEEEEec-------cCCCeEEEEEEEEE
Confidence 23333432 33447898888776
No 153
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.37 E-value=7.3 Score=30.44 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=43.7
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEE--ccee---eEeccccCCCCCceeccEEEEEee--c-CCCCeEEEEEEEcc
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHI--KPLF---KVKTNVVDNNLNPVWNQTFELIAE--D-KETQSLIFEVFDKD 336 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~--~~~~---~~kT~~~~~t~nP~Wne~f~~~v~--~-~~~~~L~v~v~d~d 336 (398)
+.+.+...++.........++-|+.+.+ ++.. ...|+.+.-..++.|||...|++. + +....|.+++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666544332223578888865 3311 224555554566899998888763 2 34568999999865
No 154
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.97 E-value=2.4 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 015915 4 ISGVFMGMIFGIALMA 19 (398)
Q Consensus 4 ~~g~~~g~~~~l~l~~ 19 (398)
+.|+++|.+.|+++.+
T Consensus 66 i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH
Confidence 4455555554444444
No 155
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=73.95 E-value=1.1 Score=46.98 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=72.8
Q ss_pred CcchHHHHHHHHhHhhhHHHH--HHHHHHHhHHHHHHhcC-CCCcceEEEeEEecCCCCCeeeeEEEEEcC-CCeEEEEE
Q 015915 67 YEQVKWLNKELSKLWPFVADA--AELVIKESVEPLLEEYR-PPGITSLKFSKLSLGNVAPKIEGIRVQSLK-QGQITMDI 142 (398)
Q Consensus 67 ~E~~~WlN~~l~~~Wp~~~~~--~~~~~~~~l~~~l~~~~-p~~~~~i~~~~~~lG~~pP~i~~ir~~~~~-~~~~~ld~ 142 (398)
.+-+-|+|.++.++.--+.+. ..+...+.++.++...+ |++++.+--.+++-|..||.|++.++.... .+..-++.
T Consensus 333 d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 333 DEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred chhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 356789999999988644432 56678888888888866 779999999999999999999999987643 34556889
Q ss_pred EEEEeCCCcEEEEEEe
Q 015915 143 DFRWGGDPSIILGVEA 158 (398)
Q Consensus 143 ~~~~~~~~~i~l~~~~ 158 (398)
|+.|.||..+.+...+
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998777666544
No 156
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.47 E-value=4.6 Score=32.91 Aligned_cols=23 Identities=35% Similarity=0.376 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALMAGWRHM 24 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~ 24 (398)
|+++|.+.|++..+++++++.|.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 68899999997766666655544
No 157
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.55 E-value=1.4 Score=45.74 Aligned_cols=69 Identities=14% Similarity=0.021 Sum_probs=48.9
Q ss_pred CCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-CCCCceeEEEEEECcccc
Q 015915 284 KSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD-IGQDKRLGIVKLPLIDLE 354 (398)
Q Consensus 284 ~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d-~~~d~~lG~~~i~l~~l~ 354 (398)
..+||+.+.+.-.+...+.+.+.+.+|.|+++|...+.. ...+.+.++... ...+.+...+.+..+++.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k 96 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQK 96 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHH
Confidence 468999888875444556667889999999999999765 457888898875 555554444444444444
No 158
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=70.87 E-value=12 Score=32.60 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=39.2
Q ss_pred EeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-C-----CCCceeEEEEEECcc
Q 015915 299 VKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-I-----GQDKRLGIVKLPLID 352 (398)
Q Consensus 299 ~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~-----~~d~~lG~~~i~l~~ 352 (398)
++|-+..+ .+|.|+|++.+.+... ...-|.|++++.+ . .....+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 8999999999888543 3557889999877 2 225689999999977
No 159
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=67.45 E-value=16 Score=31.91 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=41.8
Q ss_pred eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-CCC------CceeEEEEEECcc
Q 015915 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-IGQ------DKRLGIVKLPLID 352 (398)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~~~------d~~lG~~~i~l~~ 352 (398)
....|.+...+.+|.|+|++.+.+.-. +..-|.|+.++.+ ..+ ...+|-+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456788888999999999998877543 3456888888866 221 2569999999854
No 160
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=67.09 E-value=84 Score=30.34 Aligned_cols=108 Identities=14% Similarity=0.240 Sum_probs=70.4
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceec--cEEEEEeecCCCCeEEEEEEEccCCCCce
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWN--QTFELIAEDKETQSLIFEVFDKDIGQDKR 342 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wn--e~f~~~v~~~~~~~L~v~v~d~d~~~d~~ 342 (398)
.|.|.|.+-.++. -...-|+.+..+. ...+|..+.-+..-.-+ +...+.+.. -+..|++.+|-..+-+...
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~Gr-~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLvkk~h 131 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTDK-YDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLTKKVH 131 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcCc-eEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEeccccceeE
Confidence 4667776655543 3456788888887 56677555433332223 334444444 3568999999988777889
Q ss_pred eEEEEEECccc--ccccccceEEecccccccccccCCCcccEEEEEE
Q 015915 343 LGIVKLPLIDL--EADTPKEAELRLLPSLDMLKIKDKKDRGSITVKV 387 (398)
Q Consensus 343 lG~~~i~l~~l--~~~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~l 387 (398)
+|.+.+.++.= ...-++..|+-+. +++...+.|.+++
T Consensus 132 IgdI~InIn~dIIdk~FPKnkWy~c~--------kDGq~~cRIqLSF 170 (508)
T PTZ00447 132 IGQIKIDINASVISKSFPKNEWFVCF--------KDGQEICKVQMSF 170 (508)
T ss_pred EEEEEecccHHHHhccCCccceEEEe--------cCCceeeeEEEEe
Confidence 99999998763 3344577888773 4556677777765
No 161
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.67 E-value=12 Score=26.69 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 015915 6 GVFMGMIFGIALM 18 (398)
Q Consensus 6 g~~~g~~~~l~l~ 18 (398)
.|++|.++|..+.
T Consensus 27 ~f~~G~llg~l~~ 39 (68)
T PF06305_consen 27 AFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554433
No 162
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=58.38 E-value=3.2 Score=29.46 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALMAGWRHM 24 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~ 24 (398)
|+|+|.+.|+++.++|+.++.+.
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777766654443
No 163
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=57.17 E-value=34 Score=30.09 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=41.4
Q ss_pred eeEeccccCCCCCceeccEEEEEeecC--CCCeEEEEEEEcc-C--C-------CCceeEEEEEECcc
Q 015915 297 FKVKTNVVDNNLNPVWNQTFELIAEDK--ETQSLIFEVFDKD-I--G-------QDKRLGIVKLPLID 352 (398)
Q Consensus 297 ~~~kT~~~~~t~nP~Wne~f~~~v~~~--~~~~L~v~v~d~d-~--~-------~d~~lG~~~i~l~~ 352 (398)
....|.+...+.+|.|+|++.+.+.-. ...-|.|+.|+.+ . . ....+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356788888899999999998877432 3456888888865 1 1 13569999999866
No 164
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=56.21 E-value=5.1 Score=42.87 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=62.2
Q ss_pred CCcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc----eeeEeccccCCCCCceeccEEEEEeecCCCCeEEEEEEEcc-
Q 015915 262 PQGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP----LFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKD- 336 (398)
Q Consensus 262 ~~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~~~v~~~~~~~L~v~v~d~d- 336 (398)
.-|.+++.+++|..+.. ..+-||...+.. ..+.+|.++.+|..|.||+++++.+. +.+.+++..++++
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~--~sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI--ESQSSRLEKTEKST 829 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh--hccccchhhhcccc
Confidence 46899999999998863 356788887642 24678999999999999999987775 3566777776654
Q ss_pred ----------CCCCceeEEEEEECccc
Q 015915 337 ----------IGQDKRLGIVKLPLIDL 353 (398)
Q Consensus 337 ----------~~~d~~lG~~~i~l~~l 353 (398)
...+...|++.+.+.-.
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCcc
Confidence 23455677777766543
No 165
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=55.02 E-value=13 Score=27.21 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMAGW 21 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~ 21 (398)
|+.||++|.++|.++.+++
T Consensus 1 F~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 6788888888887776543
No 166
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=52.93 E-value=42 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=7.9
Q ss_pred hhhhhhhcCCCCcc
Q 015915 48 DDLKKICGDNFPVW 61 (398)
Q Consensus 48 ~~~~~~~~~~~p~w 61 (398)
+.+.+++-..-|.|
T Consensus 59 ~tLE~ILdae~P~w 72 (75)
T PF06667_consen 59 ETLERILDAEHPNW 72 (75)
T ss_pred HHHHHHHcCCCCCc
Confidence 34455555566666
No 167
>PF15102 TMEM154: TMEM154 protein family
Probab=51.83 E-value=9 Score=32.05 Aligned_cols=6 Identities=50% Similarity=1.226 Sum_probs=3.9
Q ss_pred HHHHHH
Q 015915 71 KWLNKE 76 (398)
Q Consensus 71 ~WlN~~ 76 (398)
.|+|..
T Consensus 132 kwm~s~ 137 (146)
T PF15102_consen 132 KWMNSM 137 (146)
T ss_pred hHHHhh
Confidence 577764
No 168
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=51.39 E-value=43 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=9.0
Q ss_pred hhhhhhhcCCCCcc
Q 015915 48 DDLKKICGDNFPVW 61 (398)
Q Consensus 48 ~~~~~~~~~~~p~w 61 (398)
+.+.+++...-|.|
T Consensus 59 ~tLE~ILd~e~P~w 72 (75)
T TIGR02976 59 DTLERILDAEHPNW 72 (75)
T ss_pred HHHHHHHcCCCcCc
Confidence 45556666667777
No 169
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.68 E-value=41 Score=23.83 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMA 19 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~ 19 (398)
|++|+++|+++++.-.+
T Consensus 28 f~~G~llg~l~~~~~~~ 44 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRL 44 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555543
No 170
>PRK09458 pspB phage shock protein B; Provisional
Probab=48.73 E-value=47 Score=24.49 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=7.1
Q ss_pred hhhhhhcCCCCcc
Q 015915 49 DLKKICGDNFPVW 61 (398)
Q Consensus 49 ~~~~~~~~~~p~w 61 (398)
.+.+++-...|.|
T Consensus 60 tLE~ILDae~P~W 72 (75)
T PRK09458 60 ALEAILDAEHPNW 72 (75)
T ss_pred HHHHHHcccCCCc
Confidence 3445555556666
No 171
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=45.35 E-value=46 Score=20.78 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=6.7
Q ss_pred chhHHHHHHHH
Q 015915 3 LISGVFMGMIF 13 (398)
Q Consensus 3 ~~~g~~~g~~~ 13 (398)
+++|.++|++.
T Consensus 5 lL~GiVlGli~ 15 (37)
T PF02529_consen 5 LLSGIVLGLIP 15 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHhHH
Confidence 45667777663
No 172
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=44.84 E-value=39 Score=20.95 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=6.1
Q ss_pred chhHHHHHHH
Q 015915 3 LISGVFMGMI 12 (398)
Q Consensus 3 ~~~g~~~g~~ 12 (398)
+++|+++|++
T Consensus 5 lL~GiVLGli 14 (37)
T PRK00665 5 LLCGIVLGLI 14 (37)
T ss_pred hhhhHHHHhH
Confidence 4566666665
No 173
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.78 E-value=21 Score=29.29 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 015915 4 ISGVFMGMIFGIALMAG 20 (398)
Q Consensus 4 ~~g~~~g~~~~l~l~~~ 20 (398)
++||++|+++|+++...
T Consensus 3 ~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777887777776543
No 174
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=44.71 E-value=27 Score=34.47 Aligned_cols=14 Identities=0% Similarity=0.090 Sum_probs=9.6
Q ss_pred eCCCCcchHHHHHH
Q 015915 63 SFPVYEQVKWLNKE 76 (398)
Q Consensus 63 ~~~d~E~~~WlN~~ 76 (398)
..++..+++|+|.-
T Consensus 112 e~~~~~~~d~v~Ed 125 (429)
T PF12297_consen 112 EPSQFTSADGVSED 125 (429)
T ss_pred Cccccchhhhhhhh
Confidence 44556778888765
No 175
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=43.81 E-value=40 Score=20.90 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=6.1
Q ss_pred chhHHHHHHH
Q 015915 3 LISGVFMGMI 12 (398)
Q Consensus 3 ~~~g~~~g~~ 12 (398)
+++|+++|++
T Consensus 5 lL~GiVLGli 14 (37)
T CHL00008 5 LLFGIVLGLI 14 (37)
T ss_pred hhhhHHHHhH
Confidence 4556666665
No 176
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=41.36 E-value=2.3e+02 Score=24.28 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=50.9
Q ss_pred EEeeeeecccCcCCCCCCcEEEEEEc--c-------ee-eEeccccCC-----CCCceeccEEEEEeec--CC-CCeEEE
Q 015915 269 TIVKANNLKNMEMIGKSDPYAVVHIK--P-------LF-KVKTNVVDN-----NLNPVWNQTFELIAED--KE-TQSLIF 330 (398)
Q Consensus 269 ~V~~a~~L~~~d~~g~~dpyv~v~~~--~-------~~-~~kT~~~~~-----t~nP~Wne~f~~~v~~--~~-~~~L~v 330 (398)
.|.+|++. ..++-||+-++. + .. ...|.+... +..-.||.-|++.... +. -..|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45666643 345678887662 1 12 345555432 3446799877776643 22 258999
Q ss_pred EEEEcc-CCCCceeEEEEEECccc
Q 015915 331 EVFDKD-IGQDKRLGIVKLPLIDL 353 (398)
Q Consensus 331 ~v~d~d-~~~d~~lG~~~i~l~~l 353 (398)
+||..| .+++...|-..+.+-.-
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeCCC
Confidence 999999 89999998877666443
No 177
>PF15179 Myc_target_1: Myc target protein 1
Probab=37.96 E-value=29 Score=30.13 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMAGWRHM 24 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~~~~ 24 (398)
|-+..++|+++|.++++.+...
T Consensus 25 F~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556766666666654444
No 178
>PF14851 FAM176: FAM176 family
Probab=35.89 E-value=31 Score=29.27 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMAG 20 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~ 20 (398)
|++|+++|+++.|++++.
T Consensus 26 Fv~gVC~GLlLtLcllV~ 43 (153)
T PF14851_consen 26 FVSGVCAGLLLTLCLLVI 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 567999999999988873
No 179
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.57 E-value=67 Score=20.31 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.6
Q ss_pred cchhHHHHHHHHH
Q 015915 2 GLISGVFMGMIFG 14 (398)
Q Consensus 2 ~~~~g~~~g~~~~ 14 (398)
|++.|.+.|+.+.
T Consensus 7 aIIv~V~vg~~ii 19 (38)
T PF02439_consen 7 AIIVAVVVGMAII 19 (38)
T ss_pred hHHHHHHHHHHHH
Confidence 3455555555433
No 180
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=34.56 E-value=63 Score=31.68 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 015915 6 GVFMGMIFGIALMAGWRHMMRYRSTKRIAKA 36 (398)
Q Consensus 6 g~~~g~~~~l~l~~~~~~~~~~~~~~r~~~~ 36 (398)
.++-.++.|+++..+...++-.++++|..+.
T Consensus 177 pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~ 207 (433)
T COG2851 177 PLIPIQIIGLVLVLALAWLLGKKERKRLGVI 207 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHhhhc
Confidence 3444555555555544444445566776554
No 181
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=34.40 E-value=43 Score=24.17 Aligned_cols=12 Identities=33% Similarity=1.018 Sum_probs=6.2
Q ss_pred cchhHHHHHHHH
Q 015915 2 GLISGVFMGMIF 13 (398)
Q Consensus 2 ~~~~g~~~g~~~ 13 (398)
|++.|+++|+++
T Consensus 48 GIlYG~viGlli 59 (70)
T TIGR01149 48 GILYGLVIGLIL 59 (70)
T ss_pred HHHHHHHHHHHH
Confidence 445555555544
No 182
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=33.70 E-value=40 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.718 Sum_probs=9.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALM 18 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~ 18 (398)
|++.|+++|+++.++..
T Consensus 51 GIlYG~viGlli~~i~~ 67 (77)
T PRK01026 51 GILYGLVIGLLIVLVYI 67 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666665544443
No 183
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=33.19 E-value=43 Score=24.20 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=7.6
Q ss_pred cchhHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIA 16 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~ 16 (398)
|++.|+++|+++-++
T Consensus 48 GIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 48 GILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554333
No 184
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=33.16 E-value=2.6e+02 Score=22.58 Aligned_cols=90 Identities=8% Similarity=-0.003 Sum_probs=51.1
Q ss_pred EEEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEee--cCCCCeEEEEEEEcc--CCCC
Q 015915 265 KVAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAE--DKETQSLIFEVFDKD--IGQD 340 (398)
Q Consensus 265 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~--~~~~~~L~v~v~d~d--~~~d 340 (398)
.|.++-+.-..++.-+..+.+.||++++-+......|........-.=...+.+.+. -+-...+.|++|+.+ ...+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 445555555666666556788999999988744433333222211111122333322 111346889999987 5667
Q ss_pred ceeEEEEEECcccc
Q 015915 341 KRLGIVKLPLIDLE 354 (398)
Q Consensus 341 ~~lG~~~i~l~~l~ 354 (398)
+.+.++.+.-.=+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 78888888765555
No 185
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.20 E-value=74 Score=28.30 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 015915 6 GVFMGMIFGIALMAGWRHMMRY 27 (398)
Q Consensus 6 g~~~g~~~~l~l~~~~~~~~~~ 27 (398)
++++|.++|++.+++|+++..+
T Consensus 24 ~li~gviLg~~~lfGW~ywq~~ 45 (207)
T COG2976 24 ALIVGVILGLGGLFGWRYWQSH 45 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888999999987544
No 186
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.49 E-value=60 Score=26.60 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 015915 7 VFMGMIFGIALMAGWR 22 (398)
Q Consensus 7 ~~~g~~~~l~l~~~~~ 22 (398)
++|++++++++++++.
T Consensus 3 ~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFL 18 (130)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 3455555555544433
No 187
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=30.34 E-value=3.2e+02 Score=23.04 Aligned_cols=91 Identities=21% Similarity=0.166 Sum_probs=47.0
Q ss_pred CcEEEEEEeeeeecccCcCCCCCCcEEEEEEcc------eeeEeccccCC--CCCceeccEEEEEe--e-cCCCCeEEEE
Q 015915 263 QGKVAVTIVKANNLKNMEMIGKSDPYAVVHIKP------LFKVKTNVVDN--NLNPVWNQTFELIA--E-DKETQSLIFE 331 (398)
Q Consensus 263 ~g~L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~~kT~~~~~--t~nP~Wne~f~~~v--~-~~~~~~L~v~ 331 (398)
.-.|.|.|.+.. |+ |.....|||+.+++.. ...+.|.+... +..=.||...++.. . -+.+..+.++
T Consensus 12 ~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE 88 (147)
T PF14186_consen 12 MTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFE 88 (147)
T ss_dssp --EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEE
T ss_pred CceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEE
Confidence 345666665544 54 3345679999999843 12355665422 22334554444332 1 1345678888
Q ss_pred EEEcc--CCCCceeEEEEEECcccccc
Q 015915 332 VFDKD--IGQDKRLGIVKLPLIDLEAD 356 (398)
Q Consensus 332 v~d~d--~~~d~~lG~~~i~l~~l~~~ 356 (398)
+.++. ..+-+..+-+.+.++++..+
T Consensus 89 ~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 89 FKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEeeeccceeeeeeEEEEEEhhhccCC
Confidence 88877 34445677888899998876
No 188
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=30.33 E-value=1.4e+02 Score=31.26 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=20.3
Q ss_pred CCCc-ceeCCCCcchHHHHHHHHhHhh
Q 015915 57 NFPV-WISFPVYEQVKWLNKELSKLWP 82 (398)
Q Consensus 57 ~~p~-w~~~~d~E~~~WlN~~l~~~Wp 82 (398)
++|- -+.+.+.-.++|.|-.+..++.
T Consensus 83 nmPiGii~~~e~~~veW~Npf~~~if~ 109 (655)
T COG3887 83 NMPIGIILFNETNKVEWVNPFASKIFN 109 (655)
T ss_pred hCCceEEEEcCCCceEEecHHHHHhcC
Confidence 3444 3556788999999999998876
No 189
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.62 E-value=87 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.408 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALMA 19 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~ 19 (398)
+.+++++.|++.|+++.-
T Consensus 2 ~iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIAR 19 (64)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 356677777777766654
No 190
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=29.27 E-value=48 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=16.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMAGWRHM 24 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~~~~ 24 (398)
++.|+++|.+++++.++++.+.
T Consensus 92 lL~G~liGff~g~~~~~~L~~~ 113 (140)
T PF13373_consen 92 LLWGLLIGFFFGLFSLFWLLRE 113 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHhhc
Confidence 5778888888888886655443
No 191
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=28.55 E-value=3.5e+02 Score=22.61 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=58.0
Q ss_pred EEEEEeeeeecccCcCCCCCCcEEEEEEcceeeEeccccCCCCCceeccEEEEEeec------------CCCCeEEEEEE
Q 015915 266 VAVTIVKANNLKNMEMIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAED------------KETQSLIFEVF 333 (398)
Q Consensus 266 L~V~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~~~v~~------------~~~~~L~v~v~ 333 (398)
|+|+-+.|-+.- ...+.|-|..+++-+ +..+|+......-=.++|.|.|.-.. .+.+.+.++++
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg-~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILG-QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcc-cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 445555554432 224678999999987 57888877665555678888876421 35668889998
Q ss_pred EccCCCCceeEEEEEECcccc
Q 015915 334 DKDIGQDKRLGIVKLPLIDLE 354 (398)
Q Consensus 334 d~d~~~d~~lG~~~i~l~~l~ 354 (398)
.........|+...-..+++.
T Consensus 80 Ql~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EEeCCCCcEEEEEeccccceE
Confidence 877333778888887777764
No 192
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=27.77 E-value=92 Score=21.42 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALMAGWRHM 24 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~ 24 (398)
.|..||++|.+..++.+.+....
T Consensus 3 kF~~G~l~G~~~t~aa~a~av~~ 25 (54)
T PF11240_consen 3 KFGKGFLTGVAATLAAIAGAVFT 25 (54)
T ss_pred chhhhHHHhHHHHHHHHHHHHHH
Confidence 36789999999888888865544
No 193
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=27.66 E-value=1.5e+02 Score=23.44 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=37.9
Q ss_pred CCeEEEEEEEcc----CCCCceeEEEEEECccccc--------------ccccceEEecccccccccccCCCcccEEEEE
Q 015915 325 TQSLIFEVFDKD----IGQDKRLGIVKLPLIDLEA--------------DTPKEAELRLLPSLDMLKIKDKKDRGSITVK 386 (398)
Q Consensus 325 ~~~L~v~v~d~d----~~~d~~lG~~~i~l~~l~~--------------~~~~~~~~~L~~~~~~~~~~~~~~~G~I~l~ 386 (398)
...|.+.+++-. .....++|.+.+++.+... .......++|.. ..+...|+|.+.
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~-------~~~~~~G~I~l~ 100 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFD-------ENGNPVGEISLY 100 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeec-------CCCceeeeEEEE
Confidence 446777666533 3455789999999987652 112234555543 445578999988
Q ss_pred Eeeee
Q 015915 387 VGASK 391 (398)
Q Consensus 387 l~~~y 391 (398)
+.+++
T Consensus 101 iRLsc 105 (112)
T PF14924_consen 101 IRLSC 105 (112)
T ss_pred EEEec
Confidence 88544
No 194
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=27.44 E-value=74 Score=22.92 Aligned_cols=14 Identities=29% Similarity=0.885 Sum_probs=7.0
Q ss_pred cchhHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGI 15 (398)
Q Consensus 2 ~~~~g~~~g~~~~l 15 (398)
|++.|+++|+++.+
T Consensus 51 GILYGlVIGlil~~ 64 (75)
T COG4064 51 GILYGLVIGLILCM 64 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554433
No 195
>PRK11677 hypothetical protein; Provisional
Probab=25.21 E-value=77 Score=26.29 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 015915 4 ISGVFMGMIFGIALMA 19 (398)
Q Consensus 4 ~~g~~~g~~~~l~l~~ 19 (398)
++||++|+++|.++.-
T Consensus 7 ~i~livG~iiG~~~~R 22 (134)
T PRK11677 7 LIGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3466666666665543
No 196
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.76 E-value=98 Score=22.34 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 015915 6 GVFMGMIFGIA 16 (398)
Q Consensus 6 g~~~g~~~~l~ 16 (398)
|++.|++++++
T Consensus 37 Gvi~gi~~~~l 47 (68)
T PF04971_consen 37 GVIGGIFFGLL 47 (68)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 197
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=24.72 E-value=41 Score=25.87 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCCCcceeCCCCcchHHHHHHHHhHhhhHHHHHHHHHHHhHHHH
Q 015915 56 DNFPVWISFPVYEQVKWLNKELSKLWPFVADAAELVIKESVEPL 99 (398)
Q Consensus 56 ~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~~~~~l~~~ 99 (398)
.++|+|+.-.|.---.-.|++....|.+.+.+++-.-..+|.++
T Consensus 37 GelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 37 GELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred cccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 46999999988888889999999999999988873333334433
No 198
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=24.21 E-value=1.5e+02 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.3
Q ss_pred CCeEEEEEEEcc-CCCCceeEEEEEE
Q 015915 325 TQSLIFEVFDKD-IGQDKRLGIVKLP 349 (398)
Q Consensus 325 ~~~L~v~v~d~d-~~~d~~lG~~~i~ 349 (398)
....+|++||+| ...|++|+.+..+
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 345679999999 7899999987664
No 199
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=23.72 E-value=14 Score=31.26 Aligned_cols=14 Identities=36% Similarity=0.399 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHH
Q 015915 4 ISGVFMGMIFGIAL 17 (398)
Q Consensus 4 ~~g~~~g~~~~l~l 17 (398)
++|.++|+...++|
T Consensus 51 VIGvVVGVGg~ill 64 (154)
T PF04478_consen 51 VIGVVVGVGGPILL 64 (154)
T ss_pred EEEEEecccHHHHH
Confidence 45555554443333
No 200
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=23.45 E-value=93 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHH
Q 015915 5 SGVFMGMIFGIALMA 19 (398)
Q Consensus 5 ~g~~~g~~~~l~l~~ 19 (398)
.||+.|.++.++++.
T Consensus 43 ~G~aiG~~~AlvLv~ 57 (67)
T PRK13275 43 IGFAIGFLLALLLVV 57 (67)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366666666555543
No 201
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.11 E-value=22 Score=27.67 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=5.9
Q ss_pred chhHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGI 15 (398)
Q Consensus 3 ~~~g~~~g~~~~l 15 (398)
-|+|..+|.++++
T Consensus 67 aiagi~vg~~~~v 79 (96)
T PTZ00382 67 AIAGISVAVVAVV 79 (96)
T ss_pred cEEEEEeehhhHH
Confidence 3455554444333
No 202
>TIGR03165 F1F0_chp_2 F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.
Probab=22.93 E-value=91 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 015915 2 GLISGVFMGMIFGIALMAGWRHMMR 26 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~~~~~ 26 (398)
|++.|+++|.+.--++++-+++..+
T Consensus 6 ~l~~G~~lG~~~F~gLw~tvr~~~~ 30 (83)
T TIGR03165 6 ALLAGFLLGAFFFGGLWWTVRKGLA 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666666666666666666543
No 203
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.85 E-value=2.4e+02 Score=22.49 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 015915 3 LISGVFMGMIFGIALMAGWRHMM 25 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~~~~~~~ 25 (398)
|+.||++-+++.|+|+.+.-+..
T Consensus 63 ffvglii~LivSLaLVsFvIFLi 85 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLI 85 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhe
Confidence 57799999999999888665543
No 204
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=22.53 E-value=4.3e+02 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.611 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 015915 4 ISGVFMGMIFGIALMAGWRHMM 25 (398)
Q Consensus 4 ~~g~~~g~~~~l~l~~~~~~~~ 25 (398)
.+|.++|+++|+.+...|-++.
T Consensus 4 ~vg~l~al~laf~~~~~~~~~~ 25 (209)
T PF14023_consen 4 VVGVLFALLLAFTISSAWSRYD 25 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999998874
No 205
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=22.12 E-value=45 Score=28.98 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 015915 2 GLISGVFMGMIFGIALMAGWR 22 (398)
Q Consensus 2 ~~~~g~~~g~~~~l~l~~~~~ 22 (398)
++++|+++|+++.++++..+.
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeehhhHHHHHHHhHhhhe
Confidence 456677777776665555444
No 206
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=22.09 E-value=68 Score=28.58 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=14.5
Q ss_pred CcchhHHH-HH--HHHHHHHHHHHHHH
Q 015915 1 MGLISGVF-MG--MIFGIALMAGWRHM 24 (398)
Q Consensus 1 ~~~~~g~~-~g--~~~~l~l~~~~~~~ 24 (398)
|+.|++++ +| +++.+++..+|+..
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~~~ 125 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYCCH 125 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHHhh
Confidence 34556666 77 66666666655544
No 207
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.03 E-value=1.1e+02 Score=23.32 Aligned_cols=8 Identities=0% Similarity=-0.305 Sum_probs=3.2
Q ss_pred Hhhhhhhc
Q 015915 36 AADIKILG 43 (398)
Q Consensus 36 ~~~~~~~~ 43 (398)
.+.++|.-
T Consensus 63 rPIYrPvI 70 (94)
T PF05393_consen 63 RPIYRPVI 70 (94)
T ss_pred CCcccccc
Confidence 34444433
No 208
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=21.23 E-value=1.4e+02 Score=21.35 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 015915 4 ISGVFMGMIFGIALMA 19 (398)
Q Consensus 4 ~~g~~~g~~~~l~l~~ 19 (398)
+.||++|.++.++++.
T Consensus 42 ~~GfaiG~~~AlvLv~ 57 (64)
T PF09472_consen 42 IKGFAIGFLFALVLVG 57 (64)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4577777777766665
No 209
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.94 E-value=47 Score=25.72 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=13.6
Q ss_pred eeCCCCcchHHHHHHHH
Q 015915 62 ISFPVYEQVKWLNKELS 78 (398)
Q Consensus 62 ~~~~d~E~~~WlN~~l~ 78 (398)
...+|+|+.||+.++.+
T Consensus 76 ~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 76 LLSSDYERSEWRESIQK 92 (96)
T ss_pred EecCHHHHHHHHHHHHH
Confidence 34579999999998864
No 210
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=20.85 E-value=1.1e+02 Score=23.54 Aligned_cols=16 Identities=44% Similarity=0.949 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 015915 9 MGMIFGIALMAGWRHM 24 (398)
Q Consensus 9 ~g~~~~l~l~~~~~~~ 24 (398)
+|+++|++++.++.+.
T Consensus 41 ~g~i~g~~~~~~~~k~ 56 (95)
T PF07178_consen 41 IGLILGIVLWWGYRKF 56 (95)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 211
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=20.31 E-value=1.1e+02 Score=23.99 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 015915 9 MGMIFGIALMAGWRHM 24 (398)
Q Consensus 9 ~g~~~~l~l~~~~~~~ 24 (398)
+|+++|++++.++++.
T Consensus 47 ~g~i~g~~~~~~~r~l 62 (101)
T PRK13707 47 FGIIAAVLVWFGIRKL 62 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555553
No 212
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.12 E-value=1.4e+02 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=11.0
Q ss_pred chhHHHHHHHHHHHHHH
Q 015915 3 LISGVFMGMIFGIALMA 19 (398)
Q Consensus 3 ~~~g~~~g~~~~l~l~~ 19 (398)
|++|++++.++..+|++
T Consensus 19 ~LVGVv~~al~~SlLIa 35 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIA 35 (102)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67888877665544444
Done!