Query 015916
Match_columns 398
No_of_seqs 246 out of 2270
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 04:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.1E-22 3.7E-27 200.9 21.0 293 11-396 22-326 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.8E-22 6.2E-27 199.9 10.6 286 13-396 26-321 (451)
3 2gfp_A EMRD, multidrug resista 99.8 1.2E-19 4.1E-24 175.7 13.7 244 31-395 17-265 (375)
4 4gc0_A D-xylose-proton symport 99.8 3.2E-19 1.1E-23 178.9 10.0 169 34-202 32-229 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.7 1.5E-16 5.3E-21 159.4 16.7 149 38-193 38-196 (491)
6 2cfq_A Lactose permease; trans 99.6 2.8E-15 9.6E-20 147.8 9.3 129 34-167 28-162 (417)
7 2xut_A Proton/peptide symporte 99.4 1.9E-12 6.4E-17 130.7 17.0 149 38-193 37-198 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.0 8.8E-10 3E-14 108.4 10.4 158 31-193 269-433 (451)
9 4gc0_A D-xylose-proton symport 98.9 2.8E-08 9.5E-13 99.0 17.7 167 31-199 294-469 (491)
10 3o7q_A L-fucose-proton symport 98.9 7.4E-09 2.5E-13 101.4 13.2 130 31-169 275-407 (438)
11 4aps_A DI-OR tripeptide H+ sym 98.9 5.8E-09 2E-13 104.0 11.7 163 36-198 305-477 (491)
12 2cfq_A Lactose permease; trans 98.8 1.1E-08 3.7E-13 100.4 10.7 142 50-198 260-405 (417)
13 2gfp_A EMRD, multidrug resista 98.2 9.8E-08 3.3E-12 91.6 -2.1 131 40-175 226-358 (375)
14 2xut_A Proton/peptide symporte 98.2 9E-06 3.1E-10 81.5 11.8 105 65-169 352-467 (524)
15 2g9p_A Antimicrobial peptide l 23.7 25 0.00084 18.6 0.6 14 67-80 2-15 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=1.1e-22 Score=200.91 Aligned_cols=293 Identities=12% Similarity=0.055 Sum_probs=198.0
Q ss_pred CCcHHHHHHHHHHHHHhcc-cccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHH
Q 015916 11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG 88 (398)
Q Consensus 11 ~~~w~~l~~~~~~~~~~g~-~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~ 88 (398)
+++|..+...++..+..+. .+.++.+.|.+++++|++..+.+++.+...++..+ .++.|++.||+|||++++++.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 3455555544444444443 35667788899999999999999987877888765 899999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916 89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF 167 (398)
Q Consensus 89 ~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~ 167 (398)
+++.+++..... .++++.+++.|++.|++.+..+++...++.+++|+ +|++++|+...+.++|..+.+.+...+.
T Consensus 102 ~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 102 ALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988843211 15788999999999999999888899999999985 6999999999999999999998887765
Q ss_pred -CCChh---HHHHHHHHHHHHHHHhhhhcccccCCCCCC-chhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHH
Q 015916 168 -ADDPA---KFLFMLAIVPFVVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI 242 (398)
Q Consensus 168 -~~~~~---~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
+.... .-. -+.+++.... ......+||..+...+.+.+
T Consensus 178 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-------------------- 220 (438)
T 3o7q_A 178 LSNVPHQSQDVL-----------------DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL-------------------- 220 (438)
T ss_dssp HTSSCCCCHHHH-----------------HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred hccccccccccc-----------------ccCCcchhhhhhhhhhhhHHHHHHHHHHHHH--------------------
Confidence 32100 000 0000000000 00001225543322211000
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCc
Q 015916 243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED 322 (398)
Q Consensus 243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 322 (398)
++.... . +. +.|+.++ +.++ + ++ +....
T Consensus 221 -------~~~~~~--~----~~-~~p~~~~---------~~~~---~---------------~~-----------~~~~~ 248 (438)
T 3o7q_A 221 -------LVALLI--M----LT-KFPALQS---------DNHS---D---------------AK-----------QGSFS 248 (438)
T ss_dssp -------HHHHHH--H----HC-CCCCCTT---------TCCC---C---------------SS-----------TTSHH
T ss_pred -------HHHHHH--H----HH-cCCcccc---------cccc---c---------------cc-----------ccchh
Confidence 000000 0 11 1010100 0000 0 00 00112
Q ss_pred chHHHHhccHhHHHHHHHHHhcccceeeeeechHHH-HHHh-CCCc--hhHHHHHHHHHHHHhhhhhhhhhHHHHhHh
Q 015916 323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIKMV 396 (398)
Q Consensus 323 ~t~~~~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i-~~~~-g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~~~~ 396 (398)
.+.++++|++.+|...+..++..+....+.+.++.+ .++. |.+. .....++..+++.+|+++.|+++||++||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 456889999999999999888888777788888988 8776 8763 667888999999999999999999999986
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.87 E-value=1.8e-22 Score=199.86 Aligned_cols=286 Identities=14% Similarity=0.026 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHHHHhc-ccccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHH
Q 015916 13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV 90 (398)
Q Consensus 13 ~w~~l~~~~~~~~~~g-~~~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~i 90 (398)
+|..+...++..+..+ ..+.++.+.|.+.+++ ++..+.+++.+...++..+ .++.|++.||+|+|+++.++.++.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3555555555544443 3466777888888899 9999999987777787765 89999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916 91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (398)
Q Consensus 91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~ 169 (398)
+.+++++.... . ++++.+++.|++.|++.+..+++....+.+++|+ +|++++|+...+.++|..+.+.+...+.+.
T Consensus 105 ~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 105 VMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988761100 0 4677888899999999998888889999999984 699999999999999999998887765432
Q ss_pred Ch-hHHHHHHHHHHH-HHHHhhhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHH
Q 015916 170 DP-AKFLFMLAIVPF-VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL 247 (398)
Q Consensus 170 ~~-~~~~~~~~~~~~-~i~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (398)
.. |++.+.+..+.. +..++..+++|+.|++..
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 215 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG---------------------------------------------- 215 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC----------------------------------------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcC----------------------------------------------
Confidence 11 222222111111 111111112222211100
Q ss_pred HHHHHhhhhhccccccccccccccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHH
Q 015916 248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE 327 (398)
Q Consensus 248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~ 327 (398)
.. +. ++.+.+. ++ + . +++ ++++...++...++
T Consensus 216 -------------------------~~-~~-~~~~~~~---~~-----~---~---~~~-------~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 216 -------------------------LP-PI-EEYKNDY---PD-----D---Y---NEK-------AEQELTAKQIFMQY 247 (451)
T ss_dssp -------------------------CC-SC-TTTCCC----------------------------------CCTHHHHHH
T ss_pred -------------------------CC-Ch-hhhcccc---cc-----c---c---hhh-------hhcccccccchHHH
Confidence 00 00 0000000 00 0 0 000 00011112334678
Q ss_pred HhccHhHHHHHHHHHhcccceeeeeechHHHHHH-hCCCc--hhHHHHHHHHHHHHhhhhhhhhhHHH--HhHh
Q 015916 328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYF--IKMV 396 (398)
Q Consensus 328 ~l~t~~Fw~l~~~~~~~~~~g~~~~~n~~~i~~~-~g~~~--~a~~vsl~si~~~~GRl~~G~lsD~~--~~~~ 396 (398)
.+|++.+|.+.+..++......++.+.++.+.++ .|.++ .....++.++++.+|+++.|+++||+ ++|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 9999999999998888877777777888888887 67763 56788999999999999999999999 8775
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.81 E-value=1.2e-19 Score=175.71 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=178.4
Q ss_pred ccccccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (398)
Q Consensus 31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~ 109 (398)
..+....|.+.+++|+|..+.+++.+...++... .++.|++.||+|||+++.++.++..++.++..+. ++++
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence 3445567888999999999999987777777754 8999999999999999999999999999888765 5688
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhhc-cCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHh
Q 015916 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188 (398)
Q Consensus 110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 188 (398)
.+++.|++.|++.+..++.....+.+++| ++|+++.++...+.++|..+.+.+...+.+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------------------- 149 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------------------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------------------
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------
Confidence 88889999999999888888899999998 579999999999999999999888776543
Q ss_pred hhhcccccCCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHHhhhhhccccccccccc
Q 015916 189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL 268 (398)
Q Consensus 189 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~ 268 (398)
..+||..+...+.+ .++..... ... ++
T Consensus 150 ------------------~~~~~~~~~~~~~~---------------------------~~~~~~~~-~~~---~~---- 176 (375)
T 2gfp_A 150 ------------------MWNWRACYLFLLVL---------------------------CAGVTFSM-ARW---MP---- 176 (375)
T ss_dssp ------------------HHHHHHHHHHHHHH---------------------------HHHHHCCC-CCS---SC----
T ss_pred ------------------hccHHHHHHHHHHH---------------------------HHHHHHHH-HHH---Cc----
Confidence 24555433211100 00000100 000 11
Q ss_pred cccCCCCCcchhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCcCCcchHHHHhccHhHHHHHHHHHhcccce
Q 015916 269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348 (398)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~t~~~~l~t~~Fw~l~~~~~~~~~~g 348 (398)
++++ .++ + ++ + ...+.++.+|+|++|.+.+..++.....
T Consensus 177 ~~~~----------~~~-------------------~--------~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (375)
T 2gfp_A 177 ETRP----------VDA-------------------P--------RT--R--LLTSYKTLFGNSGFNCYLLMLIGGLAGI 215 (375)
T ss_dssp CCST----------TTC-------------------C--------CC--C--TTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC----------CCc-------------------c--------cc--c--HHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 0000 000 0 00 0 0123467889999999988887776666
Q ss_pred eeeeechHHHHHH-hCCC--chhHHHHHHHHHHHHhhhhhhhhhHHHHhH
Q 015916 349 LAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIKM 395 (398)
Q Consensus 349 ~~~~~n~~~i~~~-~g~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~~~ 395 (398)
..+....+.+.++ .|.+ +.....++.+++..+++++.|++.||.+++
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777666 6765 356788889999999999999999999874
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.78 E-value=3.2e-19 Score=178.87 Aligned_cols=169 Identities=13% Similarity=0.054 Sum_probs=131.9
Q ss_pred cccHHHHHHHcCCC--------hhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhccc-
Q 015916 34 SNYSDALKTLMNLT--------QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI- 103 (398)
Q Consensus 34 s~~~~~l~~~~g~s--------~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~- 103 (398)
+...|.++++++.+ ..+.+++.+...+|..+ +++.|++.||+|||++++++.+++.++.+++++......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44567777776432 34556666777788876 689999999999999999999999999988874211000
Q ss_pred ----------CCchHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcC----
Q 015916 104 ----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA---- 168 (398)
Q Consensus 104 ----------~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~---- 168 (398)
.++++++++++|++.|+|.|..++....++.|+.|+ +||+..++...+..+|..+...+......
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 025788999999999999999888899999999985 69999999999888887776666544432
Q ss_pred ----CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCC
Q 015916 169 ----DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV 202 (398)
Q Consensus 169 ----~~~~~~~~~~~~~~~~i~~~~~~~l~~~p~~~~~ 202 (398)
...|+++..+...+.++.++..+++||.|+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~ 229 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS 229 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence 1357888888888999999999999999987654
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.71 E-value=1.5e-16 Score=159.39 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=122.2
Q ss_pred HHHHHH-----cCCChhhHHHHHHHHHhhhhh-hhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHH
Q 015916 38 DALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ 110 (398)
Q Consensus 38 ~~l~~~-----~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~ 110 (398)
+.++++ +|++..+.+++.+...++..+ .++.|++.|| +|||+++.++.++..++.++++++ ++++.
T Consensus 38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~ 110 (491)
T 4aps_A 38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGASA 110 (491)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CSTTH
T ss_pred HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence 335555 999999999987777777765 7999999999 899999999999999998887653 46778
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhhc-cC--CcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 015916 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL 187 (398)
Q Consensus 111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (398)
+++.|++.|+|.+...++....+.+++| ++ |+.+.++...+..+|..+.+.+...+.+...|++.+.+..+..++.+
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 190 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8889999999999888888899999998 45 67788888899999999999998888776668877777766666555
Q ss_pred hhhhcc
Q 015916 188 GAIFFL 193 (398)
Q Consensus 188 ~~~~~l 193 (398)
+..++.
T Consensus 191 ~~~~~~ 196 (491)
T 4aps_A 191 LVYYFG 196 (491)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.58 E-value=2.8e-15 Score=147.76 Aligned_cols=129 Identities=14% Similarity=0.089 Sum_probs=85.3
Q ss_pred cccHHHHHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHH-HHhcccCCchH-HH
Q 015916 34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSY-WQ 110 (398)
Q Consensus 34 s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~-~~~~~~~~~~~-~~ 110 (398)
+.+...+++++|+|..+.+++.+...++..+ +++.|++.||+|||++++++..+..++...... ... ... ..
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 102 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYN 102 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 3333346778999999999977777777755 899999999999999999988877553221111 000 000 01
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhhc---cCCcchHHHHHhhhhhhHHHHHHHHHhHc
Q 015916 111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALF 167 (398)
Q Consensus 111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp---~~RG~a~gi~~~~~glg~~i~~~l~~~~~ 167 (398)
+...+.+.+.+.+..+.+.......+.+ ++||.+.|.......+|..+.+.+...+.
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~ 162 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234555565555554444445555654 45788899988888899888887776654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.44 E-value=1.9e-12 Score=130.70 Aligned_cols=149 Identities=17% Similarity=0.031 Sum_probs=121.9
Q ss_pred HHHHHHcC------CChhhHHHHHHHHHhhhhh-hhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHHhcccCCc-hH
Q 015916 38 DALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-SY 108 (398)
Q Consensus 38 ~~l~~~~g------~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~-~~ 108 (398)
+.+++++| ++..+.+++.+...++..+ .++.|++.||+ |+|+++.++.++..++.+++.++ . ++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~ 109 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EHSV 109 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SSCH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cccH
Confidence 44678899 9999999987777777755 79999999999 99999999999999998887764 4 67
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHH---HHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHH
Q 015916 109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184 (398)
Q Consensus 109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi---~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 184 (398)
+.+++.+++.|++.+...++....+.+++|+ +||++.++ ...+.++|..+.+.+...+.+...|++.+.+..+..+
T Consensus 110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8888899999999998888888999999985 68887777 8888899999999888877766667777776666665
Q ss_pred HHHhhhhcc
Q 015916 185 VCLGAIFFL 193 (398)
Q Consensus 185 i~~~~~~~l 193 (398)
+.++..++.
T Consensus 190 ~~~~~~~~~ 198 (524)
T 2xut_A 190 VATVFFWLG 198 (524)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHHh
Confidence 555555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.01 E-value=8.8e-10 Score=108.36 Aligned_cols=158 Identities=9% Similarity=-0.008 Sum_probs=114.6
Q ss_pred ccccccHHHHH-HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhccc--CchHHHHHHHHHHH-HHHHHHHHHHhcccCC
Q 015916 31 YTFSNYSDALK-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILLIGSLEGL-VGYGAQWLVVSRKIQP 105 (398)
Q Consensus 31 ~~~s~~~~~l~-~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~~-ig~~~~~~~~~~~~~~ 105 (398)
+.+..+.|.+. +.+|++..+.+++.....++... .++.|++.||+ |+|+.+.++..+.. ++++++.+. ++
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 343 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----PA 343 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----CT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----cc
Confidence 34455666664 44899999999976766676655 78999999999 99999988887766 565554321 11
Q ss_pred chHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhh-hHHHHHHHHHhHcCCChhHHHHHHHHHHH
Q 015916 106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGL-STAIFTDLCSALFADDPAKFLFMLAIVPF 183 (398)
Q Consensus 106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~gl-g~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (398)
.+.+.+.+..++.|++.+..+......+.+.+|++ ||++.|+......+ |+.+.+.+.+.+.+...+...+.+..+..
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 24566666667777777766666678889999965 99999999999999 99999999988887655555555544444
Q ss_pred HHHHhhhhcc
Q 015916 184 VVCLGAIFFL 193 (398)
Q Consensus 184 ~i~~~~~~~l 193 (398)
+++.+..+++
T Consensus 424 ~~~~~~~~~~ 433 (451)
T 1pw4_A 424 ILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4554444444
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=2.8e-08 Score=98.96 Aligned_cols=167 Identities=12% Similarity=0.077 Sum_probs=107.7
Q ss_pred ccccccHHHHHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Q 015916 31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW 109 (398)
Q Consensus 31 ~~~s~~~~~l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~ 109 (398)
+....|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+.....++.+.++.......+ ....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 372 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVA 372 (491)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHH
T ss_pred hHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hHHH
Confidence 344567788888888888776665555555554 47899999999999999999999998888877655433221 1122
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhhccC-CcchHHHHHhhhhhhHHHHHHHHHhHcCCC-------hhHHHHHHHHH
Q 015916 110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSALFADD-------PAKFLFMLAIV 181 (398)
Q Consensus 110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gi~~~~~glg~~i~~~l~~~~~~~~-------~~~~~~~~~~~ 181 (398)
.+.+..+..+.+.+.. .....+.+|.||.+ |++++|+..+...+++.+.+.+...+.+.. ....+++.+++
T Consensus 373 ~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~ 451 (491)
T 4gc0_A 373 LLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451 (491)
T ss_dssp HHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 2222333333333432 34566788999964 999999999998899888776665543321 11123344444
Q ss_pred HHHHHHhhhhcccccCCC
Q 015916 182 PFVVCLGAIFFLRETTPA 199 (398)
Q Consensus 182 ~~~i~~~~~~~l~~~p~~ 199 (398)
..+..+...+++||....
T Consensus 452 ~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 452 GVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHheecCCCCC
Confidence 555555556677766543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.93 E-value=7.4e-09 Score=101.39 Aligned_cols=130 Identities=9% Similarity=-0.056 Sum_probs=97.2
Q ss_pred ccccccHHHH-H-HHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCch
Q 015916 31 YTFSNYSDAL-K-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS 107 (398)
Q Consensus 31 ~~~s~~~~~l-~-~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~ 107 (398)
+.+..+.|.+ . +.+|++..+.+++.....++... .++.|++.||+|+|+++.++.++..++.++..+. ++
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 347 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GG 347 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CC
Confidence 3444555555 4 45699999999976666666654 7899999999999999999999888887776543 23
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916 108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (398)
Q Consensus 108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~ 169 (398)
.+.+. ..++.|++.+..+........+.+|++|+.+.++... ..+|+.+.+.+.+.+.+.
T Consensus 348 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~g~l~~~ 407 (438)
T 3o7q_A 348 HVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA 407 (438)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33333 3356677777777777777789999889999998874 458999999988887764
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.90 E-value=5.8e-09 Score=104.01 Aligned_cols=163 Identities=5% Similarity=-0.053 Sum_probs=105.2
Q ss_pred cHHH-HHHHcCCChhhHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHH-----HHHHHHHHHHHHHHHHHhcc--cCCc
Q 015916 36 YSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-----IGSLEGLVGYGAQWLVVSRK--IQPL 106 (398)
Q Consensus 36 ~~~~-l~~~~g~s~~~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----~g~~~~~ig~~~~~~~~~~~--~~~~ 106 (398)
+.+. .++.++.+..+.+++.....++.. .+++.|++.||+|+|+... ++.++.+++++++....... ....
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3344 455577775555654444445544 4789999999999987655 77777777777665532110 0112
Q ss_pred hHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHH
Q 015916 107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV 185 (398)
Q Consensus 107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i 185 (398)
+.+.+.+..++.|++.+..++.....+.+.+|+ +||++.|+......+|+.+.+.+...+.+......+..++++..+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 445556667778888887777788889999996 5999999999999999999998877766554444455555555555
Q ss_pred HHhhhhcccccCC
Q 015916 186 CLGAIFFLRETTP 198 (398)
Q Consensus 186 ~~~~~~~l~~~p~ 198 (398)
.++..++.++.++
T Consensus 465 ~~~~~~~~~~~~~ 477 (491)
T 4aps_A 465 GIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.83 E-value=1.1e-08 Score=100.40 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhhhhhhhhhH
Q 015916 50 ELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128 (398)
Q Consensus 50 ~~~~i~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~ 128 (398)
+.++......++.. ..++.|++.||+|+|+++.++.++.+++++...+. ++.+.+.+..++.+++.+.....
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 332 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443 36899999999999999998888887776655331 24455555555556555544455
Q ss_pred HHHHHHHhhcc-CCcchHHHH-HhhhhhhHHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHhh-hhcccccCC
Q 015916 129 VLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA-IFFLRETTP 198 (398)
Q Consensus 129 ~~~~~~~~Fp~-~RG~a~gi~-~~~~glg~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~l~~~p~ 198 (398)
....+.+.+|+ .||++.|+. ....++|+.+.|.+.+.+.+.......+.+..+..+++.+. .++.|+.++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 66788999995 599999995 77788999999999887776444444444434343444333 444554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.19 E-value=9.8e-08 Score=91.58 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=89.1
Q ss_pred HHHHcCCChhhHHHHHHHHHhhhhh-hhhhhhhhcccCchHHHHHHHHH-HHHHHHHHHHHHhcccCCchHHHHHHHHHH
Q 015916 40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE-GLVGYGAQWLVVSRKIQPLSYWQMCVFLCM 117 (398)
Q Consensus 40 l~~~~g~s~~~~~~i~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~-~~ig~~~~~~~~~~~~~~~~~~~l~~~~~l 117 (398)
+++++|++..+.+++.....++... .++.|++.||+|+| +..+... ...+.......... ..+.+.+++..++
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 300 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VMNVWTLLVPAAL 300 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cccHHHHHHHHHH
Confidence 3556888888888876666677755 78999999999873 3333333 23232221111110 0245556666777
Q ss_pred HhhhhhhhhhHHHHHHHHhhccCCcchHHHHHhhhhhhHHHHHHHHHhHcCCChhHHH
Q 015916 118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFL 175 (398)
Q Consensus 118 ~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gi~~~~~glg~~i~~~l~~~~~~~~~~~~~ 175 (398)
.|++.+..+........+.+|++||++.|+......+|+.+.+.+.+.+.+...+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 358 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG 358 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 7888887777778888899998899999999999999988888777766543333333
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.17 E-value=9e-06 Score=81.48 Aligned_cols=105 Identities=7% Similarity=-0.091 Sum_probs=71.2
Q ss_pred hhhhhhhh----cccCc----hHHHHHHHHHHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 015916 65 GLLAGLAS----DRIPA----PIILLIGSLEGLVGYGAQWLVVSRK--IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI 134 (398)
Q Consensus 65 ~~~~G~l~----Dr~G~----r~~~~~g~~~~~ig~~~~~~~~~~~--~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~ 134 (398)
+++.+++. ||.|+ ++.+.+|.++.+++++++.+..... ....+.+.+.+..++.|++.+.........+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666654 55543 4567778888777777654321000 00124555666677888888877777778888
Q ss_pred Hhhcc-CCcchHHHHHhhhhhhHHHHHHHHHhHcCC
Q 015916 135 RNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD 169 (398)
Q Consensus 135 ~~Fp~-~RG~a~gi~~~~~glg~~i~~~l~~~~~~~ 169 (398)
+.+|+ +||+++|+.....++|+.+.+.+...+.+.
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99985 699999999999999999999998877653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.73 E-value=25 Score=18.57 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.0
Q ss_pred hhhhhhcccCchHH
Q 015916 67 LAGLASDRIPAPII 80 (398)
Q Consensus 67 ~~G~l~Dr~G~r~~ 80 (398)
+.|.++.+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999998854
Done!