BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015917
(398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
L L++ G+P LR +VW L+G ++ + D + + K + I D+ R
Sbjct: 26 LSTLVKSGVPEALRAEVWQLLAGCHDNQAXL------DRYRILITKDSAQESVITRDIHR 79
Query: 169 TFPGHPWL-DTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
TFP H + DT DG +L ++ YS D D+GYCQG +++AA+LLL EE AF +L
Sbjct: 80 TFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL-HXPEEQAFCVL 138
Query: 227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCL 286
+ + + D Y NN H + + L +Q P + SH L+ + A++WFL L
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTL 198
Query: 287 FSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELL 327
F+ P + D+L EG ++FHVALA+ K +++LL
Sbjct: 199 FTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL 239
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 13/239 (5%)
Query: 112 LIRKGIPPVLRPKVW------FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHD 165
L+++G+P R ++W + L K P+ Y +L K ++T I D
Sbjct: 45 LLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPDISYKELLK----QLTAQQHAILVD 100
Query: 166 LPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223
L RTFP HP+ G +L +L YS D +VGYCQG+++VA +LLL M +EE AF
Sbjct: 101 LGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHM-SEEQAF 159
Query: 224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWF 283
ML L+ ++ Y ++ ++ LL + +HLE + SL A WF
Sbjct: 160 EMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWF 219
Query: 284 LCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRT 342
L LF+ RV+D++F +G +V+F VAL++ +E ++ +++ L+ T
Sbjct: 220 LTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVEFLKNT 278
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 120/238 (50%), Gaps = 13/238 (5%)
Query: 113 IRKGIPPVLRPKVW------FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDL 166
+ +G+P R ++W F L K + Y +L K ++T I DL
Sbjct: 56 VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLK----QLTSQQHAILIDL 111
Query: 167 PRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFW 224
RTFP HP+ G +L +L YS D +VGYCQGL++VA +LLL M +EE+AF
Sbjct: 112 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFK 170
Query: 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFL 284
ML L+ ++ + Y ++ ++ LL + +HLE + SL A WFL
Sbjct: 171 MLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFL 230
Query: 285 CLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRT 342
+F+ P RV+D++F +G +V+F VAL++ + +L ++ +++ ++ T
Sbjct: 231 TMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 41/248 (16%)
Query: 109 LKKLIRKGIPPVLRPKVW--------------FSLSGAAKKK-----STVPESYYNDLTK 149
++ L +GIPP +R KVW F + A K+ ST N+
Sbjct: 41 VRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAG 100
Query: 150 AVEGKVTPATKQIDHDLPRTFP-------GHPWLDTPDGHATLRRVLVGYSFRDSDVGYC 202
+ + I D+ RTFP G P+ H L +L Y+ DVGY
Sbjct: 101 FSAADREASLELIKLDISRTFPNLCIFQQGGPY------HDMLHSILGAYTCYRPDVGYV 154
Query: 203 QGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCH----VEQRVFKDLLV 258
QG++++AA+L+L + T DAF + N+L C H F+
Sbjct: 155 QGMSFIAAVLILNLDTA-DAF----IAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFE 209
Query: 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAI 318
+ P++ +H + + + +W L+SKSLP + R+WDV +G + LF AL I
Sbjct: 210 ENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGI 269
Query: 319 FKMREDEL 326
K+ ED L
Sbjct: 270 LKLFEDIL 277
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
Length = 346
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSG-----AAKKKSTVP---ESYYNDLTKAVEGKVTP--- 157
L+K G+P +RP W LSG ++K T+ E Y+ + + + +
Sbjct: 44 LRKCSWPGVPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQ 103
Query: 158 -ATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM 216
+QI D+PRT P P P R+L ++ R GY QG+N + +V
Sbjct: 104 DTYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVF 163
Query: 217 -----------------------KTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF 253
E D+FW ++ LL+ + D YT G + +
Sbjct: 164 LSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDG--IQDNYTFAQPGIQKKVKAL 221
Query: 254 KDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDV 302
++L+ + ++ +H + + A W L + LP T+R+WD
Sbjct: 222 EELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDT 270
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 87/244 (35%), Gaps = 41/244 (16%)
Query: 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESY-------YNDLTKAV----EG 153
N L+++ GIP + RP VW L G + E + Y D K
Sbjct: 42 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHS 101
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
+ P QI+ D+PRT P P +L+R+L ++ R GY QG+N +
Sbjct: 102 RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFF 161
Query: 214 LVMKT----------------------------EEDAFWMLAVLLENVLVNDCYTNNLSG 245
T E D FW L LLE + D Y + G
Sbjct: 162 ETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQ--ITDNYIHGQPG 219
Query: 246 CHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305
+ + L+ + + +H + + A W CL + T +R+WD
Sbjct: 220 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 279
Query: 306 EGAK 309
E ++
Sbjct: 280 ETSQ 283
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 86/244 (35%), Gaps = 41/244 (16%)
Query: 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESY-------YNDLTKAV----EG 153
N L+++ GIP + RP VW L G + E + Y D K
Sbjct: 22 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHS 81
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
+ P QI+ D+PRT P P +L+R+L ++ R GY QG+N +
Sbjct: 82 RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFF 141
Query: 214 LVMKT----------------------------EEDAFWMLAVLLENVLVNDCYTNNLSG 245
T E D FW L LLE + D Y + G
Sbjct: 142 ETFLTEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ--ITDNYIHGQPG 199
Query: 246 CHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305
+ + L+ + + +H + + A W CL + T +R WD
Sbjct: 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWXNCLLXREFQXGTVIRXWDTYLS 259
Query: 306 EGAK 309
E ++
Sbjct: 260 ETSQ 263
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
Length = 345
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 87/232 (37%), Gaps = 45/232 (19%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSG---------------AAKKKSTVPESYYNDLTKAVEG 153
L++L GIP +RP W LSG K+ E YY+ V
Sbjct: 43 LRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQ 102
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
+QI D+PR P L P R+L ++ R GY QG+N +
Sbjct: 103 D---TYRQIHIDIPRMSPEALIL-QPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFF 158
Query: 214 LVM------------------------KTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVE 249
+V E D +W ++ LL+ + D YT G ++
Sbjct: 159 VVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGI--QDNYTFAQPGIQMK 216
Query: 250 QRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWD 301
++ ++L+ + ++ HL+ + A W L + +P T+R+WD
Sbjct: 217 VKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWD 268
>pdb|3QWL|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 7
Length = 294
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 216 MKTEEDAFWMLAVLLENVLVN--DCY------TNNLSGCHVEQ-----RVFKDLLVKQCP 262
++ +++ F +A +E ++ + DCY N L+ + + + F+ L +
Sbjct: 128 LEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRDSLPQLPKAFEQYLNLEDG 187
Query: 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAI---F 319
R+ +HL L WF F+ LP + RVWD + K+L VA+ I F
Sbjct: 188 RLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTF 247
Query: 320 KMR 322
K++
Sbjct: 248 KIK 250
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 39 LYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEG 91
LY FT N ++++VL + +V E GR WW L + G Y+ I + G
Sbjct: 13 LYDFTAR-NANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEASG 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,445,947
Number of Sequences: 62578
Number of extensions: 455885
Number of successful extensions: 1029
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 18
length of query: 398
length of database: 14,973,337
effective HSP length: 101
effective length of query: 297
effective length of database: 8,652,959
effective search space: 2569928823
effective search space used: 2569928823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)