Query 015917
Match_columns 398
No_of_seqs 312 out of 1736
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2058 Ypt/Rab GTPase activat 100.0 6.5E-59 1.4E-63 453.7 26.3 335 35-394 89-430 (436)
2 KOG2222 Uncharacterized conser 100.0 6.8E-47 1.5E-51 361.3 19.7 277 103-381 156-439 (848)
3 KOG4347 GTPase-activating prot 100.0 2.2E-44 4.7E-49 357.4 24.5 281 105-389 191-486 (671)
4 KOG2223 Uncharacterized conser 100.0 3.7E-42 8E-47 326.0 20.9 282 99-394 284-581 (586)
5 smart00164 TBC Domain in Tre-2 100.0 2.7E-42 5.9E-47 312.9 17.5 194 114-308 2-198 (199)
6 COG5210 GTPase-activating prot 100.0 2.2E-40 4.8E-45 339.0 23.7 238 104-342 200-442 (496)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 5.9E-37 1.3E-41 280.4 19.2 207 119-327 1-214 (214)
8 KOG1092 Ypt/Rab-specific GTPas 100.0 8.8E-36 1.9E-40 282.7 16.2 253 104-359 176-472 (484)
9 KOG4567 GTPase-activating prot 100.0 4.6E-35 1E-39 268.4 18.7 251 104-359 23-359 (370)
10 KOG2221 PDZ-domain interacting 100.0 2.2E-35 4.7E-40 257.9 5.6 221 35-283 45-267 (267)
11 KOG4436 Predicted GTPase activ 100.0 1.2E-32 2.6E-37 277.7 19.9 251 103-358 564-824 (948)
12 KOG1093 Predicted protein kina 100.0 6.4E-32 1.4E-36 264.4 18.2 248 107-364 346-594 (725)
13 KOG1102 Rab6 GTPase activator 100.0 5E-30 1.1E-34 253.9 16.5 247 104-357 133-382 (397)
14 KOG2224 Uncharacterized conser 99.9 9.6E-24 2.1E-28 200.8 15.1 256 102-358 420-727 (781)
15 KOG2595 Predicted GTPase activ 99.9 1.7E-23 3.7E-28 194.4 14.5 258 105-373 47-313 (395)
16 KOG1091 Ypt/Rab-specific GTPas 99.9 1.1E-22 2.4E-27 199.8 15.9 201 157-359 103-361 (625)
17 KOG2197 Ypt/Rab-specific GTPas 99.9 2.5E-21 5.4E-26 195.5 11.8 240 114-356 175-437 (488)
18 KOG4436 Predicted GTPase activ 99.8 2.9E-20 6.4E-25 188.6 14.1 256 103-359 171-439 (948)
19 KOG3636 Uncharacterized conser 99.7 1.2E-16 2.5E-21 153.4 15.2 226 116-359 36-270 (669)
20 KOG2801 Probable Rab-GAPs [Int 99.6 3.3E-14 7.1E-19 130.6 17.3 267 105-376 31-308 (559)
21 PF14961 BROMI: Broad-minded p 97.9 0.0002 4.3E-09 78.0 15.2 188 185-385 1086-1290(1296)
22 KOG1648 Uncharacterized conser 97.3 1.9E-05 4E-10 78.0 -3.0 223 107-342 549-785 (813)
23 KOG1102 Rab6 GTPase activator 78.3 0.36 7.8E-06 48.4 -2.0 127 162-322 3-131 (397)
24 PF10815 ComZ: ComZ; InterPro 66.6 7.4 0.00016 27.0 2.9 39 253-291 6-44 (56)
25 KOG2224 Uncharacterized conser 49.0 6.3 0.00014 39.2 0.3 27 207-233 574-600 (781)
26 KOG2197 Ypt/Rab-specific GTPas 37.1 12 0.00025 38.8 0.1 31 108-138 69-99 (488)
27 TIGR02433 lysidine_TilS_C tRNA 35.7 6.2 0.00013 26.4 -1.5 24 105-128 19-43 (47)
28 PF08109 Antimicrobial14: Lact 30.1 39 0.00085 19.8 1.5 15 199-213 3-17 (31)
29 PF12829 Mhr1: Transcriptional 25.9 17 0.00037 28.4 -0.7 45 105-149 26-73 (91)
No 1
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-59 Score=453.74 Aligned_cols=335 Identities=42% Similarity=0.668 Sum_probs=279.6
Q ss_pred cccccCCCcccCCcchh----hhHHHHHHHHHHHHHHHHHHHhhhcCCcccccchhcchhhhhhhhhcccccCCChHHHH
Q 015917 35 KFQDLYGFTVEGNVDDV----NVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLK 110 (398)
Q Consensus 35 ~~~D~ygf~~~~~~~~~----~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk 110 (398)
..+|+|||......... ..+........++..+|.....++ .+|.. .-.....+.+||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~elk 150 (436)
T KOG2058|consen 89 NGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDELK 150 (436)
T ss_pred CcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHHHH
Confidence 46788888753322221 222222223334445677666555 55532 011235689999
Q ss_pred HHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCC-CCCCCch--hHHHHHH
Q 015917 111 KLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATLRR 187 (398)
Q Consensus 111 ~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~-~~f~~~~--~~~~L~r 187 (398)
++||+|||+++|+.||..++|....... .++|++++.....+.+++.+||+.|++||||++ +.|.++. ++.+|+|
T Consensus 151 ~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrR 228 (436)
T KOG2058|consen 151 RLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRR 228 (436)
T ss_pred HHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHH
Confidence 9999999999999999999994443322 478999988766666689999999999999999 7888764 4899999
Q ss_pred HHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHH
Q 015917 188 VLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASH 267 (398)
Q Consensus 188 IL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~h 267 (398)
||.||++|||.||||||||++||++|++|++||+|||+|+.++++++|. ||++++.|.++++.+|+.+++..+|+|+.|
T Consensus 229 vL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~ 307 (436)
T KOG2058|consen 229 VLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLH 307 (436)
T ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHHHh
Confidence 9999999999999999999999999999977999999999999999865 999999999999999999999999999999
Q ss_pred HHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCCCCC
Q 015917 268 LEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLF 347 (398)
Q Consensus 268 L~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~~~~ 347 (398)
|..++++..+++.+||+|+|++++|.++++||||++|+||.+++|++|+|+++.++++|+++.+..++++++..++...+
T Consensus 308 l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~ 387 (436)
T KOG2058|consen 308 LEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSI 387 (436)
T ss_pred hhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC
Q 015917 348 DPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK 394 (398)
Q Consensus 348 d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~~~~~~~~~~ 394 (398)
+.+ +.||.....+....+...+..+ +.+.+.+-.+.+..+...
T Consensus 388 ~~~---~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 430 (436)
T KOG2058|consen 388 DPD---QDAFGLANKLTISKIPIQQVLQ-PELKDSLADRLRDSARLS 430 (436)
T ss_pred hhh---hhhhhcccccccccCchhhhhH-HHhhhhhhhhcccccccc
Confidence 888 8899988888888888777766 666666666555554433
No 2
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.8e-47 Score=361.30 Aligned_cols=277 Identities=34% Similarity=0.618 Sum_probs=260.6
Q ss_pred CCChHHHHHHHHhC-CCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--
Q 015917 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP-- 179 (398)
Q Consensus 103 ~~~~~klk~l~~~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~-- 179 (398)
..+++|++.+++.| ||+++|+.+|+.|+|+..++... +..|++++++..+......+||++|+-|+.|++..|..+
T Consensus 156 ~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~a-e~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~ 234 (848)
T KOG2222|consen 156 ELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDA-ETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNG 234 (848)
T ss_pred ccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccc-cccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCC
Confidence 45789999999765 99999999999999998776654 367999999988877788999999999999999999875
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHH
Q 015917 180 DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVK 259 (398)
Q Consensus 180 ~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 259 (398)
+|...|+|||++.++..|++||||||.-|+|.||+++ .||.|||++.++++..+|..||+..+.|++.+.++...++.-
T Consensus 235 ~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~~ 313 (848)
T KOG2222|consen 235 EGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIAC 313 (848)
T ss_pred cchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHHh
Confidence 5799999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCC----CCHHHH
Q 015917 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVT----HHVGDV 335 (398)
Q Consensus 260 ~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~----~~~~e~ 335 (398)
+.|.+-+.|+.+.++.++.+..||+|+|++++.....+||||.||++|...+|++.+++|++.+.+|... .++.++
T Consensus 314 ~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~iaettensa~i 393 (848)
T KOG2222|consen 314 HLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEIAETTENSADI 393 (848)
T ss_pred ccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765 688999
Q ss_pred HHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHH
Q 015917 336 INILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMA 381 (398)
Q Consensus 336 ~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~ 381 (398)
+..|..+|....|++.++..|-+.-.+++...|...|++|.+.+++
T Consensus 394 f~als~ip~~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~lma 439 (848)
T KOG2222|consen 394 FNALSDIPAEVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVLMA 439 (848)
T ss_pred HHHHHhCCchhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhhhh
Confidence 9999999998889999999999998899999999999999999986
No 3
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=357.39 Aligned_cols=281 Identities=36% Similarity=0.676 Sum_probs=262.7
Q ss_pred ChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCchhHHH
Q 015917 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHAT 184 (398)
Q Consensus 105 ~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~ 184 (398)
...+++++++.|||...|+.+|..++|+......++ ++|..+++...++.+-+.+.|++|++|..|.|+-|+++.|...
T Consensus 191 qt~~~~Klv~~gipe~~rgeiW~l~sGav~~~l~~~-Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~a 269 (671)
T KOG4347|consen 191 QTILLRKLLYNGFPEDPRGEIWYLASGAVASLLLNP-GEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSEPGIAA 269 (671)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHhhhHHHHHhhcCc-HHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCCCchhh
Confidence 678999999999999999999999999977776665 7899999988888888999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHH
Q 015917 185 LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRI 264 (398)
Q Consensus 185 L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L 264 (398)
|+|||.||++.||+|||||.||.+++.+|+++ .||+|||+++.+++.+. ++||+....|...++.+|+.+++.++|.|
T Consensus 270 LR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~i-p~yys~~vvGtliDQ~vfe~lve~~lP~l 347 (671)
T KOG4347|consen 270 LRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYI-PDYYSKTVVGTLIDQSVFEELVEDTLPVL 347 (671)
T ss_pred HHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhc-ccccchhhhhhHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999998 79999999999999986 79999999999999999999999999999
Q ss_pred HHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCC
Q 015917 265 ASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTH 344 (398)
Q Consensus 265 ~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~ 344 (398)
+.|+..+| ...+...+||+|+|...+|++..+||.|+||.+|++++|.+|+||++.+.+.|++++|.++++.++.+...
T Consensus 348 ~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~~ 426 (671)
T KOG4347|consen 348 GEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDDGEAMMVLGNYFD 426 (671)
T ss_pred HHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHH
Confidence 99999999 68899999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred CCCC---------------hhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 015917 345 HLFD---------------PDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRR 389 (398)
Q Consensus 345 ~~~d---------------~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~~~~~ 389 (398)
+..+ ...|+..||+.++-++.+.|+.+|.||+..|+..++...+|
T Consensus 427 ~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg~it~e~ie~~R~K~r~~v~q~le~~~kr 486 (671)
T KOG4347|consen 427 SIYNGDYPDESDHASDSIEIQDLLATAYEKFGDITDELIEHLRKKHRLGVLQSLEDFTKR 486 (671)
T ss_pred hccCCCCCccccchhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4332 34699999999999999999999999999999988765544
No 4
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-42 Score=325.98 Aligned_cols=282 Identities=27% Similarity=0.464 Sum_probs=241.5
Q ss_pred ccccCCChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHH------------HhcC---CCCchhhhHh
Q 015917 99 KLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTK------------AVEG---KVTPATKQID 163 (398)
Q Consensus 99 ~~~~~~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~------------~~~~---~~~~~~~qI~ 163 (398)
+|+.+..+.+++.++|.|||+++||+||....|..-... .+.|..... +..+ .......+|.
T Consensus 284 nWe~m~~SrR~relWwQGiP~~VRGkvW~laIGNel~it---~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~ 360 (586)
T KOG2223|consen 284 NWEDMLKSRRVRELWWQGIPPSVRGKVWSLAIGNELNIT---YELFDIALARAKEREAKSLAEQMSNSAADREASVELIK 360 (586)
T ss_pred chHHHHhhHHHHHHHHccCChhhcchhhHhhhCcccccC---HHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhhee
Confidence 667778999999999999999999999999999753221 233433322 2111 1123567999
Q ss_pred hhcCCcCCCCCCCCCc-hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCC
Q 015917 164 HDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNN 242 (398)
Q Consensus 164 ~Dl~RT~~~~~~f~~~-~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~ 242 (398)
.|+.||||+..+|+.. .-.+.|..+|.||+.|.|++||+|||.+|+|+||+.| ++.+||.+|.+++++.+...+|..+
T Consensus 361 LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d 439 (586)
T KOG2223|consen 361 LDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVD 439 (586)
T ss_pred echhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcC
Confidence 9999999999999875 4589999999999999999999999999999999999 7999999999999999989999999
Q ss_pred CccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 015917 243 LSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMR 322 (398)
Q Consensus 243 ~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~ 322 (398)
.+.+..++..|+..+++.+|+|+.||.++.+.|..|.+.|+.++|+..+|++..+||||+|+.+|..|+|+.+++||+++
T Consensus 440 ~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlkly 519 (586)
T KOG2223|consen 440 HSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLY 519 (586)
T ss_pred cHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC
Q 015917 323 EDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK 394 (398)
Q Consensus 323 ~~~Ll~~~~~~e~~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~~~~~~~~~~ 394 (398)
++.|+.+ |+..+.++|...|..+-..+.+...|+..+ ..|.|.-.+|.+++.++++..++..
T Consensus 520 epkLl~m-Df~~~~qfLtklp~dL~~eelF~~i~~~~~---------~sr~kkwsqvf~~i~kd~~eg~k~s 581 (586)
T KOG2223|consen 520 EPKLLVM-DFIHVAQFLTKLPEDLTPEELFMHIAYIQM---------QSRSKKWSQVFQEIDKDVNEGGKTS 581 (586)
T ss_pred cchHhhh-hHHHHHHHHHhCcccCCHHHHHHHHHHHhh---------hhhchhHHHHHHHHHhhccccCCCC
Confidence 9999987 578899999888765544444556665432 2666778899999999988877654
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2.7e-42 Score=312.91 Aligned_cols=194 Identities=43% Similarity=0.757 Sum_probs=176.2
Q ss_pred HhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--hhHHHHHHHHHH
Q 015917 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVG 191 (398)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rIL~a 191 (398)
++|||+++|+.||+.++|+.....+.....|+++.+.....+....+||++||+||+|++++|+.+ .+++.|.|||.+
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~ 81 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKA 81 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHH
Confidence 689999999999999999987654433568999887754444445789999999999999999864 589999999999
Q ss_pred hhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHh-
Q 015917 192 YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA- 270 (398)
Q Consensus 192 ys~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~- 270 (398)
|+.++|++||||||++|||+++.++.+|++|||++++++++.. ..+|.++.+++...+..++.++++++|+||+||.+
T Consensus 82 ~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~ 160 (199)
T smart00164 82 YALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDK 160 (199)
T ss_pred HHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-cccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence 9999999999999999999999999779999999999999887 47788888899999999999999999999999996
Q ss_pred CCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCc
Q 015917 271 LDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA 308 (398)
Q Consensus 271 ~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~ 308 (398)
.|+++..|+.+||+|+|++.+|++.++||||+|+++|.
T Consensus 161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 161 LGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred cCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999995
No 6
>COG5210 GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=339.00 Aligned_cols=238 Identities=39% Similarity=0.635 Sum_probs=214.7
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcC-CCC--chhhhHhhhcCCcCCCCCCCCCch
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG-KVT--PATKQIDHDLPRTFPGHPWLDTPD 180 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~-~~~--~~~~qI~~Dl~RT~~~~~~f~~~~ 180 (398)
....+++.++++|||..+|+.||..++|+.......+ +.|..+...... ... ....+|++||.||+|.+..|+.+.
T Consensus 200 ~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~~ 278 (496)
T COG5210 200 VQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNP-GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEI 278 (496)
T ss_pred hhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCc-hHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCcc
Confidence 4678999999999999999999999999987766543 567776653322 222 368999999999999999999887
Q ss_pred hHHH--HHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHH
Q 015917 181 GHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLV 258 (398)
Q Consensus 181 ~~~~--L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 258 (398)
++.. |+|||.||+.++|++||||||++|+|+||++|.+|++||||+++|+.....+++|..++.|++.++.++..+++
T Consensus 279 s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~ 358 (496)
T COG5210 279 SIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVE 358 (496)
T ss_pred cccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHH
Confidence 7666 99999999999999999999999999999999669999999999999766799999999999999999999999
Q ss_pred HhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHH
Q 015917 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINI 338 (398)
Q Consensus 259 ~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~ 338 (398)
..+|++|+||...|+....|+++||+|+|.+.+|++.++||||++|++|..++|.+++|++...+..++.+.+...+..+
T Consensus 359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~ 438 (496)
T COG5210 359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLL 438 (496)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666666
Q ss_pred HHhc
Q 015917 339 LQRT 342 (398)
Q Consensus 339 L~~~ 342 (398)
+...
T Consensus 439 ~~~~ 442 (496)
T COG5210 439 LKQL 442 (496)
T ss_pred HHhh
Confidence 6544
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=100.00 E-value=5.9e-37 Score=280.37 Aligned_cols=207 Identities=38% Similarity=0.639 Sum_probs=174.3
Q ss_pred CchhHHHHHHhhcChhh-cccC-----chHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCchhHHHHHHHHHHh
Q 015917 119 PVLRPKVWFSLSGAAKK-KSTV-----PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGY 192 (398)
Q Consensus 119 ~~~R~~vW~~llg~~~~-~~~~-----~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~rIL~ay 192 (398)
+++|+.+|+.++|..+. .... ....+..........+.+..++|++|+.||++.+..+..+.++..|.+||.+|
T Consensus 1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~ 80 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAY 80 (214)
T ss_dssp -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHh
Confidence 46899999999999530 0000 00111122222334456779999999999999778888888999999999999
Q ss_pred hhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhCC
Q 015917 193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALD 272 (398)
Q Consensus 193 s~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~ 272 (398)
+.++|++||||||+.|+++++.++.+|++||||+++++ ...++.+|..+.++++..+..++.++++++|+|++||++.|
T Consensus 81 ~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~ 159 (214)
T PF00566_consen 81 AKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLL-NYYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLG 159 (214)
T ss_dssp HHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHH-THHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred ccccccccccchhhhhhhhhhhhcccccchhccccchh-cccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999976668999999999999 34458999999899999999999999999999999999999
Q ss_pred CcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHH-HHHHHHHHHHHcHHHHh
Q 015917 273 FDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKV-LFHVALAIFKMREDELL 327 (398)
Q Consensus 273 i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~-l~~valail~~~~~~Ll 327 (398)
+++..|+.+||+|+|++.+|.+.++|||| ++++|.++ ++++++|+++..+++||
T Consensus 160 ~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 160 VDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp -GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999 77799988 99999999999999986
No 8
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-36 Score=282.74 Aligned_cols=253 Identities=28% Similarity=0.445 Sum_probs=222.4
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCch-------HHHHHHHHHhcC------CCCchhhhHhhhcCCcC
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPE-------SYYNDLTKAVEG------KVTPATKQIDHDLPRTF 170 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~-------~~y~~l~~~~~~------~~~~~~~qI~~Dl~RT~ 170 (398)
.+.++|+++++.|||..+|+.+|+.++|+........+ ..|.+++..... ...+..+||..|++|+.
T Consensus 176 id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm~ 255 (484)
T KOG1092|consen 176 IDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRMN 255 (484)
T ss_pred ccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCCC
Confidence 57899999999999999999999999998655443222 235555544322 23356889999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhc-------------------------cHHHHHHH
Q 015917 171 PGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK-------------------------TEEDAFWM 225 (398)
Q Consensus 171 ~~~~~f~~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~-------------------------~Ee~aF~~ 225 (398)
|..++|+.+..|+.+.|||..++.++|..||+||.++++.+++.++. -|++||||
T Consensus 256 p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWC 335 (484)
T KOG1092|consen 256 PHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWC 335 (484)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999988887651 28899999
Q ss_pred HHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHh
Q 015917 226 LAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305 (398)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~ 305 (398)
+.+|++.+ .+.|+...+|++.....++.+++..++.+|+||++.|++...|+++|+-|||.+.+|+..++|+||.|++
T Consensus 336 lskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~a 413 (484)
T KOG1092|consen 336 LSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYLA 413 (484)
T ss_pred HHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhhc
Confidence 99999987 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcH---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCCCCC---ChhhHHHHHHhh
Q 015917 306 EGAK---VLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLF---DPDELLTVAFDK 359 (398)
Q Consensus 306 eG~~---~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~~~~---d~~~li~~A~~~ 359 (398)
|+.. ++++||.|+|...+++|+ ..|+.+++-+||++|...+ +.+.|+..||..
T Consensus 414 E~dgf~~FhvYvcAAFL~kW~~eL~-e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~ 472 (484)
T KOG1092|consen 414 EPDGFNEFHVYVCAAFLLKWSSELM-ENDFQELILFLQNLPTHNWSDREIELLLSEAFRL 472 (484)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Confidence 9654 679999999999999999 5679999999999998777 566788888863
No 9
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=268.40 Aligned_cols=251 Identities=25% Similarity=0.435 Sum_probs=206.7
Q ss_pred CChHHHHHHHHhCCC--CchhHHHHHHhhcChhhcccCch-------HHHHHHHHHhc--------------C-------
Q 015917 104 ANAITLKKLIRKGIP--PVLRPKVWFSLSGAAKKKSTVPE-------SYYNDLTKAVE--------------G------- 153 (398)
Q Consensus 104 ~~~~klk~l~~~GIP--~~~R~~vW~~llg~~~~~~~~~~-------~~y~~l~~~~~--------------~------- 153 (398)
.+.++|++++..|+| .++|+.+|++++|+.+....... ..|....+..- +
T Consensus 23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP 102 (370)
T KOG4567|consen 23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP 102 (370)
T ss_pred hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence 467999999999999 68999999999998655433221 23443333210 0
Q ss_pred -------------CCCchhhhHhhhcCCcCCCCCCCCCch-------------------------h--HHHHHHHHHHhh
Q 015917 154 -------------KVTPATKQIDHDLPRTFPGHPWLDTPD-------------------------G--HATLRRVLVGYS 193 (398)
Q Consensus 154 -------------~~~~~~~qI~~Dl~RT~~~~~~f~~~~-------------------------~--~~~L~rIL~ays 193 (398)
++++...||++|+.||.|...+|+... | .....|||..|+
T Consensus 103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA 182 (370)
T KOG4567|consen 103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA 182 (370)
T ss_pred CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence 022456799999999999988875310 1 234579999999
Q ss_pred hcCCCCCcccchhHHHHHHHHhhc----------cHHHHHHHHHHHHHhhcccccCC----CCCccchhHHHHHHHHHHH
Q 015917 194 FRDSDVGYCQGLNYVAALLLLVMK----------TEEDAFWMLAVLLENVLVNDCYT----NNLSGCHVEQRVFKDLLVK 259 (398)
Q Consensus 194 ~~~p~igY~QGm~~Iaa~lL~~~~----------~Ee~aF~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~ 259 (398)
..||.|||+||||.|+|++++++. .|+|||.||+.+|... .++|. ++..|++..+..+..++++
T Consensus 183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~ 260 (370)
T KOG4567|consen 183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKK 260 (370)
T ss_pred hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999884 3899999999999876 56664 4455777778999999999
Q ss_pred hcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCc--HHHHHHHHHHHHHcHHHHhCCCCHHHHHH
Q 015917 260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA--KVLFHVALAIFKMREDELLVTHHVGDVIN 337 (398)
Q Consensus 260 ~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~--~~l~~valail~~~~~~Ll~~~~~~e~~~ 337 (398)
++-+||.||++.++.|..|+++|+.++++.+||++.++||||.+|++.. .++.++|+|++...++.|+.. |+...+.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~-DF~~nmk 339 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEG-DFTVNMK 339 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhc-chHHHHH
Confidence 9999999999999999999999999999999999999999999998754 568999999999999999985 6889999
Q ss_pred HHHhcCCCCCChhhHHHHHHhh
Q 015917 338 ILQRTTHHLFDPDELLTVAFDK 359 (398)
Q Consensus 338 ~L~~~~~~~~d~~~li~~A~~~ 359 (398)
.||+.|. .|...++..|-++
T Consensus 340 LLQ~yp~--tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 340 LLQNYPT--TDISKMLAVADSL 359 (370)
T ss_pred HHhcCCC--CCHHHHHHHHHHH
Confidence 9999875 4889998777653
No 10
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-35 Score=257.85 Aligned_cols=221 Identities=30% Similarity=0.513 Sum_probs=194.3
Q ss_pred cccccCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHhhhcCCcccccchhcchhhhhhhhhcccccCCChHHHHHHHH
Q 015917 35 KFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIR 114 (398)
Q Consensus 35 ~~~D~ygf~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk~l~~ 114 (398)
...|++||....+..+....+.....++.|+.+|..|. ++|.... -++.++++.+|+
T Consensus 45 n~pdr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~ml----dnw~~~m-------------------~kk~~~ir~rcr 101 (267)
T KOG2221|consen 45 NLPDRFGFIEGEQGAQGKKEPETRGELRYRESKWLHML----DNWHEEM-------------------RKKQKKIRPRCR 101 (267)
T ss_pred cCCcccceeecccccccCCCcccHHHHHhhHHHHHHHH----HHHHHHH-------------------Hhccccccchhh
Confidence 34599999986666666666666778888999999997 7784321 135689999999
Q ss_pred hCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--hhHHHHHHHHHHh
Q 015917 115 KGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVGY 192 (398)
Q Consensus 115 ~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rIL~ay 192 (398)
+|||+++|+++|.+|+|+......+| ..|+++..+- -+....+.|.+|++|.||.|.+|.+. .|+..|+|+|+||
T Consensus 102 kgippslr~Raw~ylsGa~~~~~~np-~~~~~~~~~p--G~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ 178 (267)
T KOG2221|consen 102 KGIPPSLRGRAWRYLSGAPSPPPKNP-VVFDELGPAP--GDPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAY 178 (267)
T ss_pred cCCCcccchhHHHhhcCCCCCCCCCc-chhhhccCCC--CCCcchhhhccccccCCCcccccccccccchHHHHHHHHHH
Confidence 99999999999999999998877766 5677776442 24567899999999999999999775 5799999999999
Q ss_pred hhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhCC
Q 015917 193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALD 272 (398)
Q Consensus 193 s~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~ 272 (398)
+.++|+.||||+-..|+|++|+.| ++++||||++.++++++ ++||+.++..++.+-.++..|+++.+|-.|.|+...+
T Consensus 179 ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekyl-qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~k 256 (267)
T KOG2221|consen 179 TIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYL-QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDK 256 (267)
T ss_pred HHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHc-ccccccchhhhhcccHHHHHHHHhcCCCCCcccccCC
Confidence 999999999999999999999999 69999999999999997 7999999999999999999999999999999999999
Q ss_pred CcchhhhHHHH
Q 015917 273 FDVSLVATEWF 283 (398)
Q Consensus 273 i~~~~~~~~Wf 283 (398)
+++.+|.+.||
T Consensus 257 vdp~lym~ewF 267 (267)
T KOG2221|consen 257 VDPLLYMTEWF 267 (267)
T ss_pred CCHHHhhhccC
Confidence 99999999998
No 11
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=277.70 Aligned_cols=251 Identities=30% Similarity=0.558 Sum_probs=224.5
Q ss_pred CCChHHHHHHHHhCCCCchhHHHHHHhhcChh------hcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCC
Q 015917 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAK------KKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWL 176 (398)
Q Consensus 103 ~~~~~klk~l~~~GIP~~~R~~vW~~llg~~~------~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f 176 (398)
..+.+.+...++.|+|.+.|+.+|..+.-... .....++--|++++++. ++....|-.|+.||||+|++|
T Consensus 564 k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL----te~qhAi~idlgrtfp~h~~~ 639 (948)
T KOG4436|consen 564 KKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL----TEQQHAILIDLGRTFPTHPYF 639 (948)
T ss_pred cccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH----HHHHHHHHHhhccccCCCHHH
Confidence 45789999999999999999999999864321 22223333478888875 557788999999999999999
Q ss_pred CCc--hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHH
Q 015917 177 DTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK 254 (398)
Q Consensus 177 ~~~--~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (398)
+.+ .|+..|+++|.||+..+|++|||||+.+||++||++| +|+.||-++-.+|...+...-|.+++..++..++.+.
T Consensus 640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLs 718 (948)
T KOG4436|consen 640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLS 718 (948)
T ss_pred HhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHH
Confidence 875 5799999999999999999999999999999999999 8999999999999988888889999999999999999
Q ss_pred HHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHH
Q 015917 255 DLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGD 334 (398)
Q Consensus 255 ~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e 334 (398)
+++..+.|+||+|++++.|.|++|+.+||+|+|+..+|...+.|++|..|.+|..++|.+++++|..++..|+.++++++
T Consensus 719 rl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~llsv~k~~l~e~dn~e~ 798 (948)
T KOG4436|consen 719 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALSLLSVHKQLLLEKDNFEE 798 (948)
T ss_pred HHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHHHHHhhHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCC--ChhhHHHHHHh
Q 015917 335 VINILQRTTHHLF--DPDELLTVAFD 358 (398)
Q Consensus 335 ~~~~L~~~~~~~~--d~~~li~~A~~ 358 (398)
+..+++++.+... ..++++...|+
T Consensus 799 i~d~~k~~~p~~~~~emeki~~qvf~ 824 (948)
T KOG4436|consen 799 IVDFLKTTLPKMEHTEMEKIIKQVFE 824 (948)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 9999999876543 34667776665
No 12
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.98 E-value=6.4e-32 Score=264.45 Aligned_cols=248 Identities=25% Similarity=0.405 Sum_probs=216.8
Q ss_pred HHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCchhHHHHH
Q 015917 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLR 186 (398)
Q Consensus 107 ~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~ 186 (398)
..+-+..+-|+|+-+|+.+|..|++.... +...|..+-+ +.+.+..+||+.|++|+.......+++.|+++|+
T Consensus 346 ~qI~r~a~vdvpp~~R~~iW~aLL~l~e~----~~a~y~~IDk---~Ts~~tdrqievdiprchQyd~~lsSp~~~r~lr 418 (725)
T KOG1093|consen 346 LQILREAYVDVPPLYRGFIWAALLQLEEN----HTAFYTLIDK---GTSHSTDRQIEVDIPRCHQYDELLSSPKGHRKLR 418 (725)
T ss_pred HHHHHHhccCCChhHhHHHHHHHhcCccc----cchhhhhhhc---CCCCcchhhhhcccchhhhcccccCCHHHHHHHH
Confidence 34444456789999999999999987542 3355665532 3345889999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCcccchhHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHH
Q 015917 187 RVLVGYSFRDSDVGYCQGLNYVAALLLL-VMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265 (398)
Q Consensus 187 rIL~ays~~~p~igY~QGm~~Iaa~lL~-~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~ 265 (398)
|+|+|++..+|...|.||+..+|++||+ ++.+|+-||-|+..++-+|+.+.|..++..-++..+.+|..++..|+|+|+
T Consensus 419 RvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~fflkdns~vikeyLs~f~~l~AfhDpeL~ 498 (725)
T KOG1093|consen 419 RVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHFFLKDNSNVIKEYLSMFSQLLAFHDPELL 498 (725)
T ss_pred HHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999885 456899999999999999985444444666688889999999999999999
Q ss_pred HHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCCC
Q 015917 266 SHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHH 345 (398)
Q Consensus 266 ~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~~ 345 (398)
+||...|+.+.+|+.+||+|+|+++||.+..+.+||..+..++.+.+.+++|++...++.||.+. +.|++.++.+.+
T Consensus 499 qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~lR~~LLa~n-fne~illf~d~p-- 575 (725)
T KOG1093|consen 499 QHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQLRDPLLACN-FNECILLFSDLP-- 575 (725)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhhhhhhCC-chhheeeeccCC--
Confidence 99999999999999999999999999999999999999999999999999999999999999985 788888888876
Q ss_pred CCChhhHHHHHHhhcCCCC
Q 015917 346 LFDPDELLTVAFDKIGSMT 364 (398)
Q Consensus 346 ~~d~~~li~~A~~~~~~l~ 364 (398)
.+|.+.++..++.++...|
T Consensus 576 dldId~~Ires~~l~e~tP 594 (725)
T KOG1093|consen 576 DLDIDVCIRESYHLMETTP 594 (725)
T ss_pred cccHHHHHHHHhhhhhCCC
Confidence 4699999999988766554
No 13
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.97 E-value=5e-30 Score=253.86 Aligned_cols=247 Identities=32% Similarity=0.539 Sum_probs=211.3
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccC-chHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--h
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTV-PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--D 180 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~-~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~ 180 (398)
.+..++...+..|||..+|+.+|..+++........ ....|... .........++| +|+.||||.|..|... .
T Consensus 133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~-~d~~Rt~~~~~~f~~~~~~ 208 (397)
T KOG1102|consen 133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQ---LDEPEPHESEII-RDLSRTFPAHLLFRKRYGV 208 (397)
T ss_pred ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHh---hccCCCchhHHH-hhccCcCcchhhhhhhcCc
Confidence 467899999999999999999999999873222211 11122211 112223345566 9999999999998774 5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHh
Q 015917 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQ 260 (398)
Q Consensus 181 ~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 260 (398)
++++|.+|+.||+.++|++||||||..++++++.++ +|++|||+++.++..+. .+.|..+..+++.....+..+++..
T Consensus 209 ~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~ 286 (397)
T KOG1102|consen 209 GQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYG-LDLLSPGFSGLQRSFRQLQRLLKEL 286 (397)
T ss_pred ccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccc-hhcccccCCchhhhHHHHHHHHHHh
Confidence 799999999999999999999999999999999999 69999999999999987 5666999999999999999999999
Q ss_pred cHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHH
Q 015917 261 CPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQ 340 (398)
Q Consensus 261 ~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~ 340 (398)
.|.++.|+...+++..+|+.+||+|+|+..+|++.++|+||+++.+|..+++.+++++++...+.+++.. .+.+++++.
T Consensus 287 ~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~~~~~~~~~-~e~~~~~l~ 365 (397)
T KOG1102|consen 287 IPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHKADDLLDLD-FESLLSYLR 365 (397)
T ss_pred ChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhhhHHHhhcc-HHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886 899999999
Q ss_pred hcCCCCCChhhHHHHHH
Q 015917 341 RTTHHLFDPDELLTVAF 357 (398)
Q Consensus 341 ~~~~~~~d~~~li~~A~ 357 (398)
+.....+|....-..++
T Consensus 366 ~~~~~~~~~~~~~~~~~ 382 (397)
T KOG1102|consen 366 VDLPKSYDSELSDKYLL 382 (397)
T ss_pred cccHhhcCccchhHHHH
Confidence 88776666655544443
No 14
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=9.6e-24 Score=200.76 Aligned_cols=256 Identities=20% Similarity=0.389 Sum_probs=184.4
Q ss_pred cCCChHHHHHHH-HhCCCCchhHHHHHHhhcChhhcccCch---------HHHHHHHHH-hcCCCC--------chhhhH
Q 015917 102 SLANAITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKA-VEGKVT--------PATKQI 162 (398)
Q Consensus 102 ~~~~~~klk~l~-~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~-~~~~~~--------~~~~qI 162 (398)
...+.-||++.+ ..||..++|+.||+.|+..++..++..+ ..|+++.+. .-.-.. ...-.+
T Consensus 420 qiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tv 499 (781)
T KOG2224|consen 420 QIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTV 499 (781)
T ss_pred cchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEE
Confidence 344556888888 6789999999999999987765544332 335555322 111111 112246
Q ss_pred hhhcCCcCCCCCCCCCch--hHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhh-------
Q 015917 163 DHDLPRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENV------- 233 (398)
Q Consensus 163 ~~Dl~RT~~~~~~f~~~~--~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~------- 233 (398)
++||.||..++++|..++ ..+.++|||..|+.|||.+||.|||+++.|+.|.-..+|.++||||+.+|...
T Consensus 500 dkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapi 579 (781)
T KOG2224|consen 500 DKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPI 579 (781)
T ss_pred ecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhH
Confidence 899999999999998754 58999999999999999999998888887777766666666666666666521
Q ss_pred -----------------cccccC--CCCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcc--hhhhHHHHHhhccCCCC
Q 015917 234 -----------------LVNDCY--TNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDV--SLVATEWFLCLFSKSLP 292 (398)
Q Consensus 234 -----------------~~~~~~--~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~--~~~~~~WfltlF~~~lp 292 (398)
+...+| ++....+...+..++.+++...|..|+||.++|-+. .+||-+|++.+|.+.||
T Consensus 580 laevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ 659 (781)
T KOG2224|consen 580 LAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFP 659 (781)
T ss_pred HHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhccc
Confidence 001223 222233444556789999999999999999987543 47899999999999999
Q ss_pred chhHHHHHHHHHhc--CcHHHHHHHHHHHHHcHHHHhCCC-CHHHHHHHHHhcCCCCCChhhHHHHHHh
Q 015917 293 SETTLRVWDVLFYE--GAKVLFHVALAIFKMREDELLVTH-HVGDVINILQRTTHHLFDPDELLTVAFD 358 (398)
Q Consensus 293 ~~~~lriWD~~l~e--G~~~l~~valail~~~~~~Ll~~~-~~~e~~~~L~~~~~~~~d~~~li~~A~~ 358 (398)
-..++|||...++. -.-|.+++|+||+.++.+.++... -.++++-.+.++.- -.|-+-++.+|..
T Consensus 660 ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam-~mdgelilrkar~ 727 (781)
T KOG2224|consen 660 EAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAM-HMDGELILRKARG 727 (781)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhh-hcCchhhHHHHHH
Confidence 99999999988854 445778899999999998877543 23555555555432 2367777777754
No 15
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-23 Score=194.42 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=201.8
Q ss_pred ChHHHHHHHH--hC-CCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCC---
Q 015917 105 NAITLKKLIR--KG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDT--- 178 (398)
Q Consensus 105 ~~~klk~l~~--~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~--- 178 (398)
+.+.|+..-. .| +-+++|+.||..|+|..-.... ...+.+..+ .+++..|+..|++|++...+.-..
T Consensus 47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~--~~~~~~~~q-----~hkd~nQV~LDv~RSl~rfppg~p~~~ 119 (395)
T KOG2595|consen 47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD--ATSTLTPVQ-----KHKDYNQVILDVERSLGRFPPGIPKEL 119 (395)
T ss_pred cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc--ccccCChhh-----hCcccceEEEehhhhhccCCCCCCHHH
Confidence 4566666553 34 5789999999999997543221 112222222 367889999999999866543111
Q ss_pred c-hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHH
Q 015917 179 P-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (398)
Q Consensus 179 ~-~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 257 (398)
+ .-|..|..++......+|+..|.||.++||.++|+++ .|.+|+-++..+....+ ++|..+++.+....+..+..++
T Consensus 120 R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l-rdfM~~Tld~t~~qL~~i~~iI 197 (395)
T KOG2595|consen 120 RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL-RDFMLPTLDFTVRQLRLISPII 197 (395)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2355666555555668899999999999999999999 79999999999886654 8999999999999999999999
Q ss_pred HHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCC-CchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCC-CHHHH
Q 015917 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL-PSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTH-HVGDV 335 (398)
Q Consensus 258 ~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~l-p~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~-~~~e~ 335 (398)
+..+|+||+.|.+-.+. .+|+.+|.+|+|++.+ ++..++|++|+|++..+-..++++.+++..++.+|++|. +..-+
T Consensus 198 k~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl~~~~dms~~ 276 (395)
T KOG2595|consen 198 KEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEILKCDCDMSLL 276 (395)
T ss_pred hhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHHHHHhhhHHH
Confidence 99999999999988886 5799999999999999 799999999999999888889999999999999999874 33333
Q ss_pred HHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHH
Q 015917 336 INILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRK 373 (398)
Q Consensus 336 ~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~ 373 (398)
-..|+.+|. ....|++|+.+...+.+.+...+.+.+.
T Consensus 277 H~lLs~iPq-~lp~d~lik~s~~~i~~~~~t~~~~~~~ 313 (395)
T KOG2595|consen 277 HGLLSTIPQ-DLPYDTLIKESVLLITRKPATLLAKDAY 313 (395)
T ss_pred HHHHHhCcc-ccCHHHHHHHHHHHHhcCChhhhhHHHH
Confidence 455556654 4588999999988877777776665443
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=199.77 Aligned_cols=201 Identities=26% Similarity=0.442 Sum_probs=161.2
Q ss_pred chhhhHhhhcCCcCCCC-CCCCCchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhcc-----------------
Q 015917 157 PATKQIDHDLPRTFPGH-PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKT----------------- 218 (398)
Q Consensus 157 ~~~~qI~~Dl~RT~~~~-~~f~~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~----------------- 218 (398)
+..+.|+.|+.||||.+ .+|+++..+..|++||..|+..+|.+||-|||+.+.|+++++...
T Consensus 103 EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 103 ELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 45678999999999999 899999999999999999999999999999999999999987621
Q ss_pred --HHH-H----------H--HHHHHHHHh--hc--------------------ccccCCCCCccchhHHHHHHHHHHHhc
Q 015917 219 --EED-A----------F--WMLAVLLEN--VL--------------------VNDCYTNNLSGCHVEQRVFKDLLVKQC 261 (398)
Q Consensus 219 --Ee~-a----------F--~~l~~l~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~ 261 (398)
|.+ + + -+++.+|.. +. +-+-+..+.+-+......+..++.+.+
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 222 1 1 122222211 10 001111223334445677889999999
Q ss_pred HHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHH-HHHhcCcHH--HHHHHHHHHHHcHHHHhCCCCHHHHHHH
Q 015917 262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWD-VLFYEGAKV--LFHVALAIFKMREDELLVTHHVGDVINI 338 (398)
Q Consensus 262 P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD-~~l~eG~~~--l~~valail~~~~~~Ll~~~~~~e~~~~ 338 (398)
+.||.||.+.||.|..|..+|...||.+.||+..++-+|| +.++.++.. +-++++++|.+.++.|+.....+ +++.
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~t-cL~~ 341 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQT-CLQY 341 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchh-HHHH
Confidence 9999999999999999999999999999999999999999 777888775 45689999999999999987766 9999
Q ss_pred HHhcCCCCCChhhHHHHHHhh
Q 015917 339 LQRTTHHLFDPDELLTVAFDK 359 (398)
Q Consensus 339 L~~~~~~~~d~~~li~~A~~~ 359 (398)
|.++|.. .|.+.+|..|.-.
T Consensus 342 Lm~yP~~-~Dv~~~iekAl~l 361 (625)
T KOG1091|consen 342 LMNYPEI-IDVDKFIEKALHL 361 (625)
T ss_pred HhcCCCc-CcHHHHHHHHHHH
Confidence 9998654 6999999999754
No 17
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-21 Score=195.46 Aligned_cols=240 Identities=25% Similarity=0.398 Sum_probs=190.3
Q ss_pred HhCCCCchhHHHHHHhhcChhhcccCch--------HHHHHHHHHhcCCCC----------chhhhHhhhcCCcCCCCCC
Q 015917 114 RKGIPPVLRPKVWFSLSGAAKKKSTVPE--------SYYNDLTKAVEGKVT----------PATKQIDHDLPRTFPGHPW 175 (398)
Q Consensus 114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~--------~~y~~l~~~~~~~~~----------~~~~qI~~Dl~RT~~~~~~ 175 (398)
..|+-+.+|+.+|+.+.+......+..+ .-|.....+...... .....|.+|+.||.+.+.+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~ 254 (488)
T KOG2197|consen 175 SGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEF 254 (488)
T ss_pred ccccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhh
Confidence 4567669999999999887665544321 013333322221111 2236799999999999999
Q ss_pred CCCchh--HHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHH
Q 015917 176 LDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF 253 (398)
Q Consensus 176 f~~~~~--~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
+..+.. ...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++. ...|..+..+++..+..+
T Consensus 255 ~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~--~~nF~~d~~~~~~Ql~~~ 332 (488)
T KOG2197|consen 255 YEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL--RHNFRIDQSGMQTQLAQL 332 (488)
T ss_pred hhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH--hhcCccccccHHHHhhhh
Confidence 887666 8999999999999999999999999999999999999999999999999985 466777778899988889
Q ss_pred HHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhc--CcHHHHHHHHHHHHHcHHHHhCCC-
Q 015917 254 KDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYE--GAKVLFHVALAIFKMREDELLVTH- 330 (398)
Q Consensus 254 ~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~e--G~~~l~~valail~~~~~~Ll~~~- 330 (398)
..+++..+|.+|.||+..+.....++++|++..|-+.+.++.++++|.++... ...+.++++.|++......|+...
T Consensus 333 ~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~~~~~ 412 (488)
T KOG2197|consen 333 SSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLMEQGK 412 (488)
T ss_pred hhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999954 446789999999999777776653
Q ss_pred CHHHHHHHHHhcCCCCCChhhHHHHH
Q 015917 331 HVGDVINILQRTTHHLFDPDELLTVA 356 (398)
Q Consensus 331 ~~~e~~~~L~~~~~~~~d~~~li~~A 356 (398)
+..+++.++.... ...|...++..|
T Consensus 413 ~~~e~l~~i~~~~-~~~d~~~~~~~A 437 (488)
T KOG2197|consen 413 SFNEVLKHVNLLS-EKADVLWVLVRA 437 (488)
T ss_pred cchhHHhhccccc-ccchhhhHHHHH
Confidence 3444454444432 233555555544
No 18
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.83 E-value=2.9e-20 Score=188.58 Aligned_cols=256 Identities=25% Similarity=0.324 Sum_probs=208.7
Q ss_pred CCChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCC-chhhhHhhhcCCcCCCCCCCCCch-
Q 015917 103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT-PATKQIDHDLPRTFPGHPWLDTPD- 180 (398)
Q Consensus 103 ~~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~-~~~~qI~~Dl~RT~~~~~~f~~~~- 180 (398)
.....+++.+|.+|||+..|-.+|..++.........-...|.++........+ ...-.|.+|++||+|.|.+|....
T Consensus 171 ~~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s 250 (948)
T KOG4436|consen 171 KKSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYFFKEQSS 250 (948)
T ss_pred hhchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceeeeccCcc
Confidence 456789999999999999999999999987554321111335555443221111 123489999999999999997632
Q ss_pred --------hHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHH
Q 015917 181 --------GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252 (398)
Q Consensus 181 --------~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
+++.|+++.++|+...-++|||||-+++++++++.+ ++|.+|..++.++..+..+..+.+.+..+...+..
T Consensus 251 ~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q 329 (948)
T KOG4436|consen 251 TVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQ 329 (948)
T ss_pred CCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHh
Confidence 489999999999999999999999999999999999 79999999999999998899999998888888888
Q ss_pred HHHHHHHhcH-HHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCC
Q 015917 253 FKDLLVKQCP-RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHH 331 (398)
Q Consensus 253 ~~~ll~~~~P-~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~ 331 (398)
+....+...| .++.|+.+.+++.++|...||++.|...+|+...-|+.|+|.++|-...|++.+|++....+.=+...|
T Consensus 330 ~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d~~~~s~D 409 (948)
T KOG4436|consen 330 LECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRDIELESLD 409 (948)
T ss_pred hcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhhhhhhccC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999444443333445
Q ss_pred HHHHHHHHHhcCCCC--CChhhHHHHHHhh
Q 015917 332 VGDVINILQRTTHHL--FDPDELLTVAFDK 359 (398)
Q Consensus 332 ~~e~~~~L~~~~~~~--~d~~~li~~A~~~ 359 (398)
++...+..+.--++. .+|+.+...|+..
T Consensus 410 ~EG~~~~~qr~~s~~vggtp~k~~t~a~q~ 439 (948)
T KOG4436|consen 410 MEGMLSYFQRNRSNTVGGTPDKLRTAAWQV 439 (948)
T ss_pred ccccccchhhccccccCCCCchHHHHHHHH
Confidence 666666665332322 3678888777653
No 19
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=153.44 Aligned_cols=226 Identities=19% Similarity=0.362 Sum_probs=173.3
Q ss_pred CCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCC--chhHHHHHHHHHHhh
Q 015917 116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDT--PDGHATLRRVLVGYS 193 (398)
Q Consensus 116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~--~~~~~~L~rIL~ays 193 (398)
|=|.+. |+.++|+..+.... ..++++. +-+...+|.+|..|.......-.. -.....|..++.-|+
T Consensus 36 G~~~~~----W~~~L~V~~K~d~l--~~wd~iy------dLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYC 103 (669)
T KOG3636|consen 36 GNDKSD----WMRLLGVSMKPNPL--DDWDQIY------DLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYC 103 (669)
T ss_pred CCCHHH----HHHHhcccCCCCch--hhHHHHh------CCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhh
Confidence 556555 99999997765443 3455554 346677888888766543322111 112457888888887
Q ss_pred hcCCCCCcccchhHHH--HHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhC
Q 015917 194 FRDSDVGYCQGLNYVA--ALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEAL 271 (398)
Q Consensus 194 ~~~p~igY~QGm~~Ia--a~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~ 271 (398)
.. .++.|...+..|. -+|+..--+-.+.|.||.+++++|.|++.-..+.+ +..|+.||+.|+|+|++||...
T Consensus 104 K~-Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~-----Fh~FRLLlqYHdPelc~~Ldtk 177 (669)
T KOG3636|consen 104 KK-RNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQI-----FHLFRLLLQYHDPELCNHLDTK 177 (669)
T ss_pred hc-cCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCcc-----chHHHHHHHhcCHHHhhhhhcc
Confidence 53 3466776655543 33333323678999999999999999888766644 5689999999999999999999
Q ss_pred CCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHH-HHHHHHHHHHcHHHHhCCC--CHHHHHHHHHhcCCCC--
Q 015917 272 DFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVL-FHVALAIFKMREDELLVTH--HVGDVINILQRTTHHL-- 346 (398)
Q Consensus 272 ~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l-~~valail~~~~~~Ll~~~--~~~e~~~~L~~~~~~~-- 346 (398)
.+.|.+|+..||-+||+.+.+.+.+.-+||.|+-.+.+|+ |+.++.||...+++||+.+ +.++++++|.+.|..+
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~ 257 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV 257 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence 9999999999999999999999999999999999999975 6778889999999998764 5689999999998754
Q ss_pred CChhhHHHHHHhh
Q 015917 347 FDPDELLTVAFDK 359 (398)
Q Consensus 347 ~d~~~li~~A~~~ 359 (398)
-|+.+++..|.-.
T Consensus 258 eDvpDffsLAqyY 270 (669)
T KOG3636|consen 258 EDVPDFFSLAQYY 270 (669)
T ss_pred ccchhHHHHHHHH
Confidence 3888898888653
No 20
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.3e-14 Score=130.58 Aligned_cols=267 Identities=27% Similarity=0.373 Sum_probs=186.4
Q ss_pred ChHHHHHHHHhCC---CCchhHHHHHHhhcChhhcccCch-HHHHHHHHHhcCCCCchhhhHhhhcCCc-CCCCCCCCCc
Q 015917 105 NAITLKKLIRKGI---PPVLRPKVWFSLSGAAKKKSTVPE-SYYNDLTKAVEGKVTPATKQIDHDLPRT-FPGHPWLDTP 179 (398)
Q Consensus 105 ~~~klk~l~~~GI---P~~~R~~vW~~llg~~~~~~~~~~-~~y~~l~~~~~~~~~~~~~qI~~Dl~RT-~~~~~~f~~~ 179 (398)
...+||++.|.|. .+.+|++|+..|..-.+.+...|+ ..|.+++...-++.+..--..-.=+..| .|.. .-+.
T Consensus 31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqvpsy--clna 108 (559)
T KOG2801|consen 31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSY--CLNA 108 (559)
T ss_pred hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcCchh--hhcC
Confidence 4578999999996 678999999999876554443333 5688887665444332211111111111 1221 2234
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcc-cccCCCCCccchhHHHHHHHHHH
Q 015917 180 DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV-NDCYTNNLSGCHVEQRVFKDLLV 258 (398)
Q Consensus 180 ~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~ 258 (398)
.|....+.||.+.+...|+|+||+.++.++|+||.+.-+|+++|--.+.++.-.-| +.....+...+...+..|..++.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvn 188 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVN 188 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHH
Confidence 56778999999999999999999999999999999988999999877776642211 12223333445555677889999
Q ss_pred HhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHH----hCCCCH-H
Q 015917 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDEL----LVTHHV-G 333 (398)
Q Consensus 259 ~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~L----l~~~~~-~ 333 (398)
++....++.+....-+.-.....|-..+| ..+|+-...|++|+|+.||.++++++++||++.+.+-- +..++. .
T Consensus 189 kycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkffhkvragqplesdsvkq 267 (559)
T KOG2801|consen 189 KYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLESDSVKQ 267 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHhhcCCCCccchHHH
Confidence 99988888776655555556677887777 58999999999999999999999999999999876532 333332 4
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHhH
Q 015917 334 DVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQE 376 (398)
Q Consensus 334 e~~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~ 376 (398)
++-.+.+.+.+ ...|++++++||. ++-++...|.-+.-.++
T Consensus 268 dirtfvrdiak-tvspekllekafa-irlfsrkeiqllqmane 308 (559)
T KOG2801|consen 268 DIRTFVRDIAK-TVSPEKLLEKAFA-IRLFSRKEIQLLQMANE 308 (559)
T ss_pred HHHHHHHHHHh-hCCHHHHHHHHHH-HHHhhHHHHHHHHHhhH
Confidence 56677777754 4699999999997 34556655554443333
No 21
>PF14961 BROMI: Broad-minded protein
Probab=97.94 E-value=0.0002 Score=77.96 Aligned_cols=188 Identities=16% Similarity=0.237 Sum_probs=133.1
Q ss_pred HHHHHHHhhhcCCCCCcccchhHHHHHHHHhh-ccHHHHHHHHHHHHHhh----c--ccccCCCCC------cc----ch
Q 015917 185 LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-KTEEDAFWMLAVLLENV----L--VNDCYTNNL------SG----CH 247 (398)
Q Consensus 185 L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~-~~Ee~aF~~l~~l~~~~----~--~~~~~~~~~------~~----~~ 247 (398)
-.+++..|..+++.-+| .|-...|+.+++++ .|-+.+.-.+..+-... + ++-...... .| ..
T Consensus 1086 ~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1086 SLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred hhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 33455555555555455 67777777666665 45556665554443321 1 111111111 11 12
Q ss_pred hHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHh
Q 015917 248 VEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELL 327 (398)
Q Consensus 248 ~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll 327 (398)
.....++.+|+...|.++..|...|..+...+.+|+..+|=+.+++..+..-.=+.+..|+.+-+++++|+|+..+++|+
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~il 1244 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEIL 1244 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHH
Confidence 24578999999999999999999999999999999999999999999988888888899999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHH
Q 015917 328 VTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQ 385 (398)
Q Consensus 328 ~~~~~~e~~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~ 385 (398)
+.....++.-+|+.-+-..|.+.+- + +-++++..+++..+.++++.
T Consensus 1245 q~~q~q~L~~flke~~l~gF~~~~~----~--------~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1245 QHTQTQDLQVFLKEEALRGFRVSDY----L--------EYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred HhhhhchHHHHhhhccccceeHHhH----H--------HHHHHHHHHhHhHHHHHHHH
Confidence 8876666777777654443433332 2 33667778888888888764
No 22
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.32 E-value=1.9e-05 Score=77.97 Aligned_cols=223 Identities=19% Similarity=0.272 Sum_probs=136.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHhhcChhhccc------Cc---hHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCC
Q 015917 107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST------VP---ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (398)
Q Consensus 107 ~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~------~~---~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~ 177 (398)
.-+..-++.|+-...|+.+|+...+....... +. ...|+..+-... ......|++|+.|+-.+..+|+
T Consensus 549 ~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~---~~~~~~~~kd~e~~~~~~~~fs 625 (813)
T KOG1648|consen 549 RVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF---RANLHRIDKDVERCDRNLMFFS 625 (813)
T ss_pred HHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH---hhheeeecchhhhCcchheeec
Confidence 34455567889999999999998875332111 10 133444322211 1245678999999988888898
Q ss_pred CchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHH
Q 015917 178 TPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL 257 (398)
Q Consensus 178 ~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll 257 (398)
+....++ +++...|...|-+-||.|||.++.++++.-+++|.-+--|+.-++-.- ++-|. ..+++...+--+. ++
T Consensus 626 ~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q--~~~~~-q~~~~~~~l~~~r-~~ 700 (813)
T KOG1648|consen 626 NKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ--RGKFP-QRPGMSKCLLNLR-LI 700 (813)
T ss_pred CCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh--cccCC-CCCCccccccccc-ch
Confidence 8888777 888888888899999999999999999987766554443443333221 22221 2222222111111 34
Q ss_pred HHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcC-----cHHHHHHHHHHHHHcHHHHhCCCCH
Q 015917 258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEG-----AKVLFHVALAIFKMREDELLVTHHV 332 (398)
Q Consensus 258 ~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG-----~~~l~~valail~~~~~~Ll~~~~~ 332 (398)
+-.+|-.+. +.. -....++||+.-|-+.++.+-...+|.+..... ..+-++++++.-.++.--+-..-+.
T Consensus 701 ~v~~~l~s~-id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~t~~~~~ 775 (813)
T KOG1648|consen 701 QVVDPLISD-IDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLATTNYHDVLITNNFDY 775 (813)
T ss_pred hhhcchhcc-hhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHHHhhHHHHhhcccch
Confidence 444442221 111 123458999999999999888888888777543 2345667777755544333222234
Q ss_pred HHHHHHHHhc
Q 015917 333 GDVINILQRT 342 (398)
Q Consensus 333 ~e~~~~L~~~ 342 (398)
.+++.+.+..
T Consensus 776 t~~i~~~~~~ 785 (813)
T KOG1648|consen 776 TDMIKFFNEM 785 (813)
T ss_pred HHHHHHHHHH
Confidence 5566666543
No 23
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=78.26 E-value=0.36 Score=48.45 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=84.4
Q ss_pred HhhhcCCcCCCCCCCCCchh--HHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Q 015917 162 IDHDLPRTFPGHPWLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCY 239 (398)
Q Consensus 162 I~~Dl~RT~~~~~~f~~~~~--~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~ 239 (398)
|+.|+..|+. +..+.+ ++. |.+|.-+++++||| +..+.+ ...++.
T Consensus 3 ~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~ 49 (397)
T KOG1102|consen 3 IDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS-----------------------KSDGFQ 49 (397)
T ss_pred CCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh-----------------------cccccc
Confidence 5566666665 323322 222 88899999999999 544444 113444
Q ss_pred CCCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHH
Q 015917 240 TNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIF 319 (398)
Q Consensus 240 ~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail 319 (398)
..+.........-.........+.-..|+.... ........|+.-.|........+.++||.+..+|...+..+.-..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (397)
T KOG1102|consen 50 SSNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWL 128 (397)
T ss_pred cCCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHHhh
Confidence 444443333322233333334445556666666 5667788888888999989999999999999999999988888777
Q ss_pred HHc
Q 015917 320 KMR 322 (398)
Q Consensus 320 ~~~ 322 (398)
+.+
T Consensus 129 ~~~ 131 (397)
T KOG1102|consen 129 KVI 131 (397)
T ss_pred hhc
Confidence 765
No 24
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=66.56 E-value=7.4 Score=26.95 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=34.3
Q ss_pred HHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCC
Q 015917 253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL 291 (398)
Q Consensus 253 ~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~l 291 (398)
|..+--++.|+.-..|++.||+.+.-..+-|+++|+.+.
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM 44 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVM 44 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHH
Confidence 566777899999999999999999999999999998654
No 25
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=49.05 E-value=6.3 Score=39.23 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=21.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhh
Q 015917 207 YVAALLLLVMKTEEDAFWMLAVLLENV 233 (398)
Q Consensus 207 ~Iaa~lL~~~~~Ee~aF~~l~~l~~~~ 233 (398)
+++|++|.-..+|.++||||+.+|.+.
T Consensus 574 dlvapilaevldesdtfwcfvglmqna 600 (781)
T KOG2224|consen 574 DLVAPILAEVLDESDTFWCFVGLMQNA 600 (781)
T ss_pred hhhhhHHHhhhccccchhhhhhhhcce
Confidence 567777654458999999999999863
No 26
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=37.13 E-value=12 Score=38.79 Aligned_cols=31 Identities=42% Similarity=0.562 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHhhcChhhccc
Q 015917 108 TLKKLIRKGIPPVLRPKVWFSLSGAAKKKST 138 (398)
Q Consensus 108 klk~l~~~GIP~~~R~~vW~~llg~~~~~~~ 138 (398)
-++.....||++++|+.+|..|+|.+....+
T Consensus 69 ~l~~i~~~gi~psir~evw~fll~~y~~~~~ 99 (488)
T KOG2197|consen 69 LLKLIILGGIDPSIRGEVWEFLLGCYDLDST 99 (488)
T ss_pred hheeeecCCCCCcccchhHHHHhcccCCCCc
Confidence 3444447899999999999999998775443
No 27
>TIGR02433 lysidine_TilS_C tRNA(Ile)-lysidine synthetase, C-terminal domain. TIGRFAMs model TIGR02432 describes the family of the N-terminal domain of tRNA(Ile)-lysidine synthetase. This family (TIGR02433) describes a small C-terminal domain of about 50 residues present in about half the members of family TIGR02432,and in no other protein. Characterized examples of tRNA(Ile)-lysidine synthetase from E. coli and Bacillus subtilis both contain this domain.
Probab=35.66 E-value=6.2 Score=26.35 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=19.7
Q ss_pred ChHHHHHHH-HhCCCCchhHHHHHH
Q 015917 105 NAITLKKLI-RKGIPPVLRPKVWFS 128 (398)
Q Consensus 105 ~~~klk~l~-~~GIP~~~R~~vW~~ 128 (398)
.+++||+++ ..|||+..|..+|..
T Consensus 19 ~~k~lkk~~~e~kiP~~~R~~~pll 43 (47)
T TIGR02433 19 GSKKLKKLFIDAKVPPWLRDRIPLL 43 (47)
T ss_pred CCchHHHHHHHcCCCHHHHcCccEE
Confidence 468899999 689999999886654
No 28
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=30.10 E-value=39 Score=19.83 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=10.7
Q ss_pred CCcccchhHHHHHHH
Q 015917 199 VGYCQGLNYVAALLL 213 (398)
Q Consensus 199 igY~QGm~~Iaa~lL 213 (398)
-||.||+++..--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999987655444
No 29
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.94 E-value=17 Score=28.41 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=28.9
Q ss_pred ChHHHHHHHHh---CCCCchhHHHHHHhhcChhhcccCchHHHHHHHH
Q 015917 105 NAITLKKLIRK---GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTK 149 (398)
Q Consensus 105 ~~~klk~l~~~---GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~ 149 (398)
+..-++++.+. -+|+++|...|.-++-+.-...+.....|+.|.+
T Consensus 26 ~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 26 NNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred hhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 34445566654 4899999999999876543322222356777754
Done!