Query 015917
Match_columns 398
No_of_seqs 312 out of 1736
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 5.2E-55 1.8E-59 421.5 21.4 269 104-382 21-295 (310)
2 2qq8_A TBC1 domain family memb 100.0 6.3E-55 2.2E-59 424.8 21.8 275 104-392 36-333 (334)
3 3qye_A TBC1 domain family memb 100.0 1.6E-53 5.3E-58 414.9 28.1 264 104-375 47-320 (331)
4 2qfz_A TBC1 domain family memb 100.0 2.2E-51 7.5E-56 401.9 22.4 253 105-360 39-333 (345)
5 1fkm_A Protein (GYP1P), ORF YO 100.0 5.6E-50 1.9E-54 397.9 25.4 253 104-359 21-378 (396)
6 4hl4_A TBC1 domain family memb 100.0 7.5E-49 2.6E-53 375.3 18.7 250 104-364 32-290 (292)
7 3qwl_A TBC1 domain family memb 100.0 8.2E-38 2.8E-42 297.2 20.2 228 103-359 37-282 (294)
8 4g26_A Pentatricopeptide repea 23.3 5E+02 0.017 25.2 10.9 47 263-309 126-172 (501)
9 1dxs_A P53-like transcription 21.9 74 0.0025 23.1 3.1 23 111-133 43-65 (80)
10 4g26_A Pentatricopeptide repea 16.6 4E+02 0.014 25.9 8.4 82 263-351 91-175 (501)
No 1
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-55 Score=421.54 Aligned_cols=269 Identities=30% Similarity=0.564 Sum_probs=241.0
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--hh
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DG 181 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~ 181 (398)
.++++|++++++|||+++|+.||+.++|+...... .+.|.++++ ..++..++|++|++||+|++++|..+ .+
T Consensus 21 ~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~--~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~ 94 (310)
T 3hzj_A 21 ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDG 94 (310)
T ss_dssp SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH--HHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHH
T ss_pred cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH--HHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchh
Confidence 36789999999999999999999999998653221 245766643 34677899999999999999999876 57
Q ss_pred HHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhc
Q 015917 182 HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQC 261 (398)
Q Consensus 182 ~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 261 (398)
++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++++.++++|.+++++++..+.+++.+++.++
T Consensus 95 ~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 173 (310)
T 3hzj_A 95 QESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL 173 (310)
T ss_dssp HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999 89999999999999887789999999999999999999999999
Q ss_pred HHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHH-
Q 015917 262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQ- 340 (398)
Q Consensus 262 P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~- 340 (398)
|+||+||.+.|+++..|+.+||+|+|++.+|++.++||||+|+++|.++++++|+|++..++++|+++ +.++++++++
T Consensus 174 p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~~ 252 (310)
T 3hzj_A 174 PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRV 252 (310)
T ss_dssp HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHT
T ss_pred hHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 7999999997
Q ss_pred hcCCC---CCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHH
Q 015917 341 RTTHH---LFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAE 382 (398)
Q Consensus 341 ~~~~~---~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e 382 (398)
++|.. ..|++.+++.|+.. .++...+.+.+++......+|
T Consensus 253 ~lp~~~~~~~d~~~ll~~A~~l--~~~~~~l~~~~~ey~~~~~~~ 295 (310)
T 3hzj_A 253 QLPKRYRAEENARRLMEQACNI--KVPTKKLKKYEKEYQTMRESQ 295 (310)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHC---
T ss_pred hCcccccccccHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH
Confidence 44433 24789999999987 599999999999887744443
No 2
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-55 Score=424.82 Aligned_cols=275 Identities=25% Similarity=0.428 Sum_probs=237.2
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcC----------------------CCCchhhh
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG----------------------KVTPATKQ 161 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~----------------------~~~~~~~q 161 (398)
.+.+++|+++++|||+++|+.||+.++|+.. ....+.|+.+++.... ...+..+|
T Consensus 36 ~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~---~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 112 (334)
T 2qq8_A 36 WCSRKVRDLWWQGIPPSVRGKVWSLAIGNEL---NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLEL 112 (334)
T ss_dssp CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTT---CCCHHHHHHHHHHHHHHC----------------------CCHHHH
T ss_pred cChHHHHHHHHCCCCHHHHHHHHHHHhCCcc---ccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHH
Confidence 5779999999999999999999999999853 1234667776543210 01356789
Q ss_pred HhhhcCCcCCCCCCCCCc-hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC
Q 015917 162 IDHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240 (398)
Q Consensus 162 I~~Dl~RT~~~~~~f~~~-~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~ 240 (398)
|++||+||+|++++|+.. .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++++.+.++|.
T Consensus 113 I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~ 191 (334)
T 2qq8_A 113 IKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFR 191 (334)
T ss_dssp HHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHS
T ss_pred HHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccC
Confidence 999999999999999875 5799999999999999999999999999999999998 79999999999999887678999
Q ss_pred CCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 015917 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320 (398)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~ 320 (398)
.+.+++...+.+++.+++.++|+|++||.+.|+++.+|+.+||+|+|++.+|++.++||||+|+++|.++++++|+|+|+
T Consensus 192 ~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~ 271 (334)
T 2qq8_A 192 VDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILK 271 (334)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcHHHHhCCCCHHHHHHHHHhcCCCCCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 015917 321 MREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNS 392 (398)
Q Consensus 321 ~~~~~Ll~~~~~~e~~~~L~~~~~~~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~~~~~~~~ 392 (398)
.++++|+++ ++++++++|+++|.. +|++.++..|.+.. ++. +.|+.+.+..+++++.+++.+
T Consensus 272 ~~~~~Ll~~-d~~~il~~L~~lp~~-~d~~~l~~~a~~l~--~~~------~~k~~~~~~~~~~~~~~~~~~ 333 (334)
T 2qq8_A 272 LFEDILTKM-DFIHMAQFLTRLPED-LPAEELFASIATIQ--MQS------RNKKWAQVLTALQKDSREMEK 333 (334)
T ss_dssp HTHHHHHTC-CHHHHHHHHHSCCTT-CCHHHHHHHHHHCC--CEE------TTEEHHHHHHHHHC-------
T ss_pred HHHHHHhcC-CHHHHHHHHHhCCCc-CCHHHHHHHHHHcc--CcH------HHhhHHHHHHHHHHHHHhhcc
Confidence 999999998 588999999999776 79999999999853 322 255666777888877776643
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.6e-53 Score=414.90 Aligned_cols=264 Identities=28% Similarity=0.518 Sum_probs=235.9
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccC------chHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCC
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTV------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD 177 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~------~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~ 177 (398)
.+.++|++++++|||+++|+.||+.|+|+.....+. ..+.|.++.+. .++..+||++|++||+|++++|.
T Consensus 47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~----~~~~~~~I~~Dv~Rt~~~~~~f~ 122 (331)
T 3qye_A 47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ----LTSQQHAILIDLGRTFPTHPYFS 122 (331)
T ss_dssp CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS----CCTTHHHHHHHHTTSSTTSTTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh----cCCchhHHHHhhcccCCCchhhc
Confidence 478999999999999999999999999987643221 23568888654 34567999999999999999998
Q ss_pred Cc--hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHH
Q 015917 178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD 255 (398)
Q Consensus 178 ~~--~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (398)
.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++.+.++++|.+++++++..+..+..
T Consensus 123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (331)
T 3qye_A 123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR 201 (331)
T ss_dssp STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence 76 6899999999999999999999999999999999999 89999999999999886789999999999999999999
Q ss_pred HHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHH
Q 015917 256 LLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDV 335 (398)
Q Consensus 256 ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~ 335 (398)
+++.++|+||+||.+.|+++.+|+.+||+|+|++.+|++.++||||+|+++|.++++++|+|+|..++++|+++++++++
T Consensus 202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~i 281 (331)
T 3qye_A 202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETI 281 (331)
T ss_dssp HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC--CChhhHHHHHHhhcCCCCHHHHHHHHHHh
Q 015917 336 INILQRTTHHL--FDPDELLTVAFDKIGSMTTNTISKQRKKQ 375 (398)
Q Consensus 336 ~~~L~~~~~~~--~d~~~li~~A~~~~~~l~~~~i~~~r~~~ 375 (398)
+++|++.++.. .|++.+++.|++. .+ .+.+.+..+..
T Consensus 282 l~~l~~~~p~~~~~di~~li~~A~~l--~~-s~~l~~~e~ey 320 (331)
T 3qye_A 282 VDFIKSTLPNLGLVQMEKTINQVFEM--DI-AKQLQAYEVEY 320 (331)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHC--CC-HHHHHHHHHHH
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhC--Cc-hHHHHHHHHHH
Confidence 99999965543 3788999999985 34 34555444433
No 4
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=2.2e-51 Score=401.90 Aligned_cols=253 Identities=23% Similarity=0.404 Sum_probs=226.2
Q ss_pred ChHHHHHHHHhCCCCchhHHHHHHhhcChhhccc-------CchHHHHHHHHHhcC-----CCCchhhhHhhhcCCcCCC
Q 015917 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG-----KVTPATKQIDHDLPRTFPG 172 (398)
Q Consensus 105 ~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~-----~~~~~~~qI~~Dl~RT~~~ 172 (398)
+.++||+++++|||+.+|+.||+.++|+.+.... ...+.|.++++.... ...+..+||++||+||+|+
T Consensus 39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~ 118 (345)
T 2qfz_A 39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE 118 (345)
T ss_dssp CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence 6799999999999999999999999998543211 113568888776422 1335789999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhc------------------------cHHHHHHHHHH
Q 015917 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------------TEEDAFWMLAV 228 (398)
Q Consensus 173 ~~~f~~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~------------------------~Ee~aF~~l~~ 228 (398)
++|+++.+++.|+|||.+|+.+||++|||||||+|||+||+++. +|++|||||++
T Consensus 119 -~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~ 197 (345)
T 2qfz_A 119 -ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 197 (345)
T ss_dssp -HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998763 29999999999
Q ss_pred HHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCc
Q 015917 229 LLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA 308 (398)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~ 308 (398)
+++++ +++|..+++|++..+.+++.+|+.++|+|++||.+.|+++..|+++||+|+|++.+|++.++||||+||++|.
T Consensus 198 lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~ 275 (345)
T 2qfz_A 198 LLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD 275 (345)
T ss_dssp HHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred HHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence 99986 6899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCCCCC---ChhhHHHHHHhhc
Q 015917 309 K---VLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLF---DPDELLTVAFDKI 360 (398)
Q Consensus 309 ~---~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~~~~---d~~~li~~A~~~~ 360 (398)
+ +++++|+|+|..++++|+.+.++++++.+|+++|...+ |++.|++.|+...
T Consensus 276 ~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~ 333 (345)
T 2qfz_A 276 GFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333 (345)
T ss_dssp TTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence 7 68999999999999999988899999999999988654 6889999999864
No 5
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=5.6e-50 Score=397.88 Aligned_cols=253 Identities=26% Similarity=0.427 Sum_probs=226.1
Q ss_pred CChHHHHHHHHhCCCCchhHHHHHHhhcChhhccc-------CchHHHHHHHHHhcC----CCCchhhhHhhhcCCcCCC
Q 015917 104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG----KVTPATKQIDHDLPRTFPG 172 (398)
Q Consensus 104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~----~~~~~~~qI~~Dl~RT~~~ 172 (398)
.+.++||+++++|||+.+|+.||+.++|+.+.... ...+.|.+++++... .+.+..+||++||+||+|+
T Consensus 21 ~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~ 100 (396)
T 1fkm_A 21 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH 100 (396)
T ss_dssp CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCC
Confidence 37899999999999999999999999998653221 113578888876432 3345778999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhc---------------------c-------HHHHHH
Q 015917 173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK---------------------T-------EEDAFW 224 (398)
Q Consensus 173 ~~~f~~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~---------------------~-------Ee~aF~ 224 (398)
+++|+.+.+++.|+|||.+|+.+||++|||||||+|||+||+++. + |++|||
T Consensus 101 ~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~ 180 (396)
T 1fkm_A 101 IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFW 180 (396)
T ss_dssp SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999998651 1 999999
Q ss_pred HHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHH
Q 015917 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLF 304 (398)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l 304 (398)
||+++|+++ .++|.+++++++..+.+++.+|+.++|+|++||.+.|+++.+|+++||+|+|++.+|++.++||||+||
T Consensus 181 ~f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l 258 (396)
T 1fkm_A 181 CLTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYL 258 (396)
T ss_dssp HHHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 999999985 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC---------------------------------------------------------------cHHHHHHHHHHHHH
Q 015917 305 YEG---------------------------------------------------------------AKVLFHVALAIFKM 321 (398)
Q Consensus 305 ~eG---------------------------------------------------------------~~~l~~valail~~ 321 (398)
++| ..+++++|+|+|..
T Consensus 259 ~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~ 338 (396)
T 1fkm_A 259 SETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIK 338 (396)
T ss_dssp HHHC------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHH
Confidence 998 26889999999999
Q ss_pred cHHHHhCCCCHHHHHHHHHhcCCCC---CChhhHHHHHHhh
Q 015917 322 REDELLVTHHVGDVINILQRTTHHL---FDPDELLTVAFDK 359 (398)
Q Consensus 322 ~~~~Ll~~~~~~e~~~~L~~~~~~~---~d~~~li~~A~~~ 359 (398)
.+++|+++ |+++++.+|+++|... .|++.++..|+..
T Consensus 339 ~r~~Ll~~-df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l 378 (396)
T 1fkm_A 339 WSDQLMEM-DFQETITFLQNPPTKDWTETDIEMLLSEAFIW 378 (396)
T ss_dssp THHHHTTC-CHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHhcCCCCCcccccHHHHHHHHHHH
Confidence 99999985 6899999999998754 4899999999864
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=7.5e-49 Score=375.29 Aligned_cols=250 Identities=16% Similarity=0.235 Sum_probs=220.0
Q ss_pred CChHHHHHHHHhC---CCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc-
Q 015917 104 ANAITLKKLIRKG---IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP- 179 (398)
Q Consensus 104 ~~~~klk~l~~~G---IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~- 179 (398)
.+.++|+++++.| +|+++|+.||+.|+|+....... .|...... .++..+||++||+||+|.++.|.++
T Consensus 32 ~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~---~~~~~~~~----~~~~~~qI~~Dv~RT~~~~~~~~~~~ 104 (292)
T 4hl4_A 32 TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP---ISGKNLRQ----MSKDYQQVLLDVRRSLRRFPPGMPEE 104 (292)
T ss_dssp CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS---CCCTTHHH----HCTTHHHHHHHHHTTGGGSCTTSCHH
T ss_pred ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC---chhhhhcc----cchhHHHHHHhhhhhhhhccCCCCHH
Confidence 4789999999753 89999999999999997654322 23222211 3678999999999999999998653
Q ss_pred ---hhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHH
Q 015917 180 ---DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL 256 (398)
Q Consensus 180 ---~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 256 (398)
.+++.|+|||.+|+.+||++|||||||+|||+||+++ +|++|||||+++++..+ ++||.+++.+++..+.+++.+
T Consensus 105 ~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l-~~~~~~~~~~~~~~~~~l~~l 182 (292)
T 4hl4_A 105 QREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHL-RDFMDPTMDNTKHILNYLMPI 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTT-TGGGCSSSCTTTGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999998 89999999999999765 799999999999999999999
Q ss_pred HHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCC-chhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCC-CHHH
Q 015917 257 LVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLP-SETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTH-HVGD 334 (398)
Q Consensus 257 l~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp-~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~-~~~e 334 (398)
++.++|+|++||.+.++ ..+|+++||+|+|++++| ++.++||||+|+++|..+++++|+|++..++++|++++ ++++
T Consensus 183 l~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~~ 261 (292)
T 4hl4_A 183 IDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMAS 261 (292)
T ss_dssp HHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTTH
T ss_pred HHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999 479999999999999996 99999999999999999999999999999999999974 6788
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHhhcCCCC
Q 015917 335 VINILQRTTHHLFDPDELLTVAFDKIGSMT 364 (398)
Q Consensus 335 ~~~~L~~~~~~~~d~~~li~~A~~~~~~l~ 364 (398)
+..+++++|. ..|++.+++.|...+...|
T Consensus 262 l~~~l~~lp~-~~d~~~li~~A~~l~~~~p 290 (292)
T 4hl4_A 262 VHHLLSQIPQ-DLPYETLISRAGDLFVQFP 290 (292)
T ss_dssp HHHHHHSCCS-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHHCC
Confidence 8899999874 4699999999998876555
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=297.17 Aligned_cols=228 Identities=19% Similarity=0.306 Sum_probs=186.7
Q ss_pred CCChHHHHHHHHhC-CCCchhHHHHHHhhcChhhcccCc-------hHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCC
Q 015917 103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHP 174 (398)
Q Consensus 103 ~~~~~klk~l~~~G-IP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~ 174 (398)
..+.+||++++++| ||+.+|+.||+.|+|+.+...+.. .+.|++++++. ...+||..+.+ -+
T Consensus 37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~tP----~~- 106 (294)
T 3qwl_A 37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDATP----QA- 106 (294)
T ss_dssp BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTSC----HH-
T ss_pred CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccCc----hH-
Confidence 36899999999999 999999999999999854433221 24577777652 23344443222 11
Q ss_pred CCCCchhHHHHHHHHHHhhh----------cCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCc
Q 015917 175 WLDTPDGHATLRRVLVGYSF----------RDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLS 244 (398)
Q Consensus 175 ~f~~~~~~~~L~rIL~ays~----------~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~ 244 (398)
...|..|.. .+++ .++|||..||+++++++.+|++|||||+++|++. .++|.++++
T Consensus 107 -----------~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~ 172 (294)
T 3qwl_A 107 -----------EVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLP 172 (294)
T ss_dssp -----------HHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGG
T ss_pred -----------HHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChh
Confidence 112222221 1222 2569999999999988889999999999999984 689999999
Q ss_pred cchhHHHHHHHHHHHhcHHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHH
Q 015917 245 GCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMRED 324 (398)
Q Consensus 245 ~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~ 324 (398)
|++. .++.+++.++|+|++||++.|+.+.+++.+||+|+|++.+|++.++||||+|+++|.++++++|+|+|+.+++
T Consensus 173 gl~~---~l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~ 249 (294)
T 3qwl_A 173 QLPK---AFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKI 249 (294)
T ss_dssp GHHH---HHHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 8874 4589999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHhcCCCCCChhhHHHHHHhh
Q 015917 325 ELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDK 359 (398)
Q Consensus 325 ~Ll~~~~~~e~~~~L~~~~~~~~d~~~li~~A~~~ 359 (398)
.|+++++.++++++|+++|.. |++.+++.|+..
T Consensus 250 ~Ll~~~~~~~il~~Lq~lp~~--di~~ll~~A~~l 282 (294)
T 3qwl_A 250 KVMALNSAEKITKFLENIPQD--SSDAIVSKAIDL 282 (294)
T ss_dssp HHHHCCSHHHHHHHHTTCCST--THHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHcCCcc--cHHHHHHHHHHH
Confidence 999999889999999999854 799999999875
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=23.32 E-value=5e+02 Score=25.17 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcH
Q 015917 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAK 309 (398)
Q Consensus 263 ~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~ 309 (398)
+++..+.+.|+.|...++.-++..+++.=.++...++|+-....|..
T Consensus 126 ~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 126 DMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 35566788899999999999999998888899999999999987754
No 9
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=21.93 E-value=74 Score=23.11 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=17.9
Q ss_pred HHHHhCCCCchhHHHHHHhhcCh
Q 015917 111 KLIRKGIPPVLRPKVWFSLSGAA 133 (398)
Q Consensus 111 ~l~~~GIP~~~R~~vW~~llg~~ 133 (398)
.+-...||.++|.++|+-+....
T Consensus 43 dL~~mkIpe~~R~kIWk~l~e~~ 65 (80)
T 1dxs_A 43 DLGALKIPEQYRMTIWRGLQDLK 65 (80)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHC-
T ss_pred HHHhCCCCHHHHHHHHhhHHHhc
Confidence 34456799999999999987653
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=16.65 E-value=4e+02 Score=25.94 Aligned_cols=82 Identities=11% Similarity=-0.048 Sum_probs=58.5
Q ss_pred HHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcH---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHH
Q 015917 263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAK---VLFHVALAIFKMREDELLVTHHVGDVINIL 339 (398)
Q Consensus 263 ~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~---~l~~valail~~~~~~Ll~~~~~~e~~~~L 339 (398)
+++..+...|+.|..+++.-++..++..=.++..+.+++-....|.. +.|-..+..+ ....+.++...++
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~-------~~~g~~~~A~~l~ 163 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF-------CRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH-------HHCCCHHHHHHHH
Confidence 46677888999999999999999998888899999999998877643 2232222222 2345677788888
Q ss_pred HhcCCCCCChhh
Q 015917 340 QRTTHHLFDPDE 351 (398)
Q Consensus 340 ~~~~~~~~d~~~ 351 (398)
..+...-+.|+.
T Consensus 164 ~~M~~~G~~Pd~ 175 (501)
T 4g26_A 164 AHMVESEVVPEE 175 (501)
T ss_dssp HHHHHTTCCCCH
T ss_pred HHHHhcCCCCCH
Confidence 777555555543
Done!