Query 015918
Match_columns 398
No_of_seqs 140 out of 1838
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 02:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.6E-45 3.5E-50 392.8 39.7 384 1-390 136-532 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.3E-37 2.8E-42 317.4 26.8 303 51-360 161-496 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-35 2.5E-40 273.2 15.9 266 53-323 1-282 (287)
4 PRK04841 transcriptional regul 99.9 1.4E-19 3E-24 192.0 25.0 297 44-363 10-336 (903)
5 COG2909 MalT ATP-dependent tra 99.8 8.4E-19 1.8E-23 171.8 21.5 298 45-365 16-344 (894)
6 COG3899 Predicted ATPase [Gene 99.7 1.6E-16 3.4E-21 163.8 19.5 328 49-389 1-408 (849)
7 PRK00411 cdc6 cell division co 99.6 5.6E-14 1.2E-18 135.0 24.0 285 45-340 27-358 (394)
8 PF01637 Arch_ATPase: Archaeal 99.6 8E-15 1.7E-19 130.3 11.9 197 50-252 1-234 (234)
9 TIGR00635 ruvB Holliday juncti 99.6 9.3E-14 2E-18 128.7 17.5 260 48-345 4-294 (305)
10 TIGR02928 orc1/cdc6 family rep 99.6 2.7E-12 5.9E-17 122.1 26.9 285 45-340 12-350 (365)
11 PRK00080 ruvB Holliday junctio 99.5 3.2E-13 6.9E-18 126.1 17.4 262 45-344 22-314 (328)
12 TIGR03015 pepcterm_ATPase puta 99.5 6.7E-12 1.5E-16 114.2 19.2 180 70-256 41-242 (269)
13 PF05729 NACHT: NACHT domain 99.3 2.2E-11 4.8E-16 102.1 12.9 142 73-221 1-163 (166)
14 COG2256 MGS1 ATPase related to 99.3 1.2E-10 2.7E-15 106.2 16.5 171 45-249 27-209 (436)
15 PF14516 AAA_35: AAA-like doma 99.3 4E-09 8.7E-14 98.3 25.1 285 44-354 7-328 (331)
16 PRK07003 DNA polymerase III su 99.2 2.6E-09 5.6E-14 106.2 22.9 203 45-256 13-225 (830)
17 PRK12402 replication factor C 99.2 2.9E-09 6.3E-14 100.1 21.5 201 47-254 14-228 (337)
18 PRK13342 recombination factor 99.2 2.5E-09 5.4E-14 103.0 20.6 180 46-256 10-200 (413)
19 PRK00440 rfc replication facto 99.2 7.6E-09 1.6E-13 96.6 22.7 230 47-298 16-250 (319)
20 PRK14961 DNA polymerase III su 99.2 1.2E-08 2.5E-13 96.6 23.6 199 46-253 14-221 (363)
21 PRK14949 DNA polymerase III su 99.2 9.4E-09 2E-13 104.2 23.2 187 46-253 14-221 (944)
22 PRK14960 DNA polymerase III su 99.2 1.3E-08 2.9E-13 100.1 23.4 183 45-252 12-219 (702)
23 COG1474 CDC6 Cdc6-related prot 99.1 9E-09 2E-13 96.5 21.3 285 45-340 14-334 (366)
24 PF05496 RuvB_N: Holliday junc 99.1 4.6E-10 9.9E-15 95.8 11.1 182 45-258 21-227 (233)
25 PRK14963 DNA polymerase III su 99.1 2.4E-08 5.2E-13 97.6 23.5 196 46-253 12-218 (504)
26 TIGR03420 DnaA_homol_Hda DnaA 99.1 3.7E-09 7.9E-14 93.5 15.9 175 48-256 15-205 (226)
27 PRK12323 DNA polymerase III su 99.1 2.3E-08 5E-13 98.2 22.5 200 45-253 13-226 (700)
28 PRK06893 DNA replication initi 99.1 4.3E-09 9.3E-14 93.0 16.1 155 71-256 38-207 (229)
29 PTZ00112 origin recognition co 99.1 1.1E-08 2.5E-13 102.4 20.3 245 45-302 752-1030(1164)
30 PRK14964 DNA polymerase III su 99.1 5.6E-08 1.2E-12 94.0 23.9 184 45-253 10-218 (491)
31 PLN03025 replication factor C 99.1 1.7E-08 3.7E-13 93.9 19.8 188 45-254 10-202 (319)
32 PF00308 Bac_DnaA: Bacterial d 99.1 7.2E-09 1.6E-13 90.7 16.0 191 43-256 4-212 (219)
33 TIGR02397 dnaX_nterm DNA polym 99.1 1.1E-07 2.3E-12 90.2 25.1 184 46-254 12-220 (355)
34 PRK14958 DNA polymerase III su 99.1 3.8E-08 8.3E-13 96.5 22.0 183 46-253 14-221 (509)
35 PRK14962 DNA polymerase III su 99.0 5.9E-08 1.3E-12 94.2 22.7 186 46-256 12-223 (472)
36 PRK04195 replication factor C 99.0 2.3E-08 5E-13 98.3 20.0 218 45-288 11-239 (482)
37 PRK08691 DNA polymerase III su 99.0 2.1E-08 4.6E-13 99.5 19.5 197 45-253 13-221 (709)
38 PRK14951 DNA polymerase III su 99.0 8.5E-08 1.8E-12 95.4 23.7 196 46-253 14-226 (618)
39 PF13191 AAA_16: AAA ATPase do 99.0 4E-10 8.7E-15 96.3 6.4 52 49-100 1-52 (185)
40 PRK08727 hypothetical protein; 99.0 1.9E-08 4.1E-13 89.1 17.0 173 48-254 19-206 (233)
41 PRK06645 DNA polymerase III su 99.0 9.7E-08 2.1E-12 93.1 23.2 196 45-252 18-229 (507)
42 PRK07471 DNA polymerase III su 99.0 5.6E-08 1.2E-12 91.4 20.8 200 44-252 15-238 (365)
43 PRK14957 DNA polymerase III su 99.0 9.1E-08 2E-12 93.9 22.6 179 46-249 14-217 (546)
44 PRK08903 DnaA regulatory inact 99.0 2E-08 4.3E-13 88.9 16.0 172 48-256 18-203 (227)
45 PRK08084 DNA replication initi 99.0 3.2E-08 7E-13 87.7 17.2 177 46-256 21-213 (235)
46 PF13401 AAA_22: AAA domain; P 99.0 2.6E-09 5.7E-14 85.8 9.3 114 71-190 3-125 (131)
47 PRK07994 DNA polymerase III su 99.0 7.7E-08 1.7E-12 95.9 21.5 196 45-253 13-221 (647)
48 PRK14956 DNA polymerase III su 99.0 1.2E-07 2.5E-12 90.9 21.3 200 45-253 15-223 (484)
49 TIGR00678 holB DNA polymerase 99.0 5.6E-08 1.2E-12 83.3 17.4 159 59-247 3-186 (188)
50 PTZ00202 tuzin; Provisional 99.0 1.2E-07 2.7E-12 88.4 20.6 166 44-221 258-434 (550)
51 PF13173 AAA_14: AAA domain 99.0 4.2E-09 9.2E-14 84.2 9.5 120 72-213 2-127 (128)
52 COG2255 RuvB Holliday junction 99.0 3.7E-08 7.9E-13 86.2 15.3 263 45-345 23-316 (332)
53 KOG2028 ATPase related to the 98.9 1.8E-08 3.9E-13 90.8 13.3 154 70-247 160-331 (554)
54 PRK14087 dnaA chromosomal repl 98.9 4.6E-08 9.9E-13 94.7 17.3 193 45-256 113-323 (450)
55 PRK09112 DNA polymerase III su 98.9 1E-07 2.2E-12 89.1 18.9 198 43-253 18-241 (351)
56 PRK14969 DNA polymerase III su 98.9 1.3E-07 2.7E-12 93.5 20.2 195 46-253 14-221 (527)
57 PRK14970 DNA polymerase III su 98.9 4.1E-07 8.9E-12 86.5 23.2 185 46-254 15-211 (367)
58 PRK07940 DNA polymerase III su 98.9 9.4E-08 2E-12 90.6 18.6 177 48-251 5-212 (394)
59 PRK09111 DNA polymerase III su 98.9 2.3E-07 5.1E-12 92.4 22.1 197 45-253 21-234 (598)
60 PRK13341 recombination factor 98.9 5.2E-08 1.1E-12 99.0 17.5 179 45-253 25-218 (725)
61 PRK05896 DNA polymerase III su 98.9 2.1E-07 4.6E-12 91.6 21.1 196 45-253 13-221 (605)
62 cd00009 AAA The AAA+ (ATPases 98.9 2.6E-08 5.7E-13 81.3 12.9 54 51-107 1-54 (151)
63 PRK07764 DNA polymerase III su 98.9 3.1E-07 6.7E-12 94.6 22.9 187 46-250 13-219 (824)
64 PRK14952 DNA polymerase III su 98.9 4.5E-07 9.8E-12 89.9 23.3 191 46-249 11-216 (584)
65 PRK14955 DNA polymerase III su 98.9 2E-07 4.4E-12 89.2 20.4 201 46-254 14-230 (397)
66 PRK05642 DNA replication initi 98.9 8.7E-08 1.9E-12 84.9 16.2 154 72-256 45-212 (234)
67 PRK14950 DNA polymerase III su 98.9 7.9E-08 1.7E-12 96.4 17.7 197 46-254 14-223 (585)
68 PRK14953 DNA polymerase III su 98.9 9.4E-07 2E-11 86.3 24.2 195 46-254 14-222 (486)
69 PRK14959 DNA polymerase III su 98.9 4.2E-07 9.2E-12 89.9 21.8 196 46-256 14-225 (624)
70 PRK05564 DNA polymerase III su 98.9 6.7E-07 1.5E-11 83.1 21.7 176 48-250 4-188 (313)
71 PRK09087 hypothetical protein; 98.9 1.7E-07 3.7E-12 82.4 16.5 146 71-256 43-199 (226)
72 TIGR02639 ClpA ATP-dependent C 98.8 5.4E-08 1.2E-12 100.3 15.0 175 48-243 182-382 (731)
73 TIGR03345 VI_ClpV1 type VI sec 98.8 5.4E-08 1.2E-12 101.2 14.6 176 46-246 185-390 (852)
74 PF10443 RNA12: RNA12 protein; 98.8 2.3E-06 5E-11 80.1 23.7 276 53-344 1-374 (431)
75 PRK06305 DNA polymerase III su 98.8 1.7E-06 3.7E-11 83.9 23.0 194 46-253 15-223 (451)
76 COG3903 Predicted ATPase [Gene 98.8 1.2E-08 2.7E-13 93.9 7.6 284 70-363 12-318 (414)
77 PRK00149 dnaA chromosomal repl 98.8 3E-07 6.5E-12 89.7 17.8 189 45-256 120-326 (450)
78 PRK06647 DNA polymerase III su 98.8 1.8E-06 3.9E-11 85.7 23.4 190 46-253 14-221 (563)
79 PRK08451 DNA polymerase III su 98.8 2.1E-06 4.5E-11 84.1 23.1 184 45-253 11-219 (535)
80 PRK14954 DNA polymerase III su 98.8 1.7E-06 3.6E-11 86.5 22.7 198 46-251 14-227 (620)
81 TIGR00362 DnaA chromosomal rep 98.8 4.7E-07 1E-11 87.3 18.1 189 45-256 108-314 (405)
82 PRK07133 DNA polymerase III su 98.8 2.2E-06 4.7E-11 86.3 23.1 196 46-254 16-221 (725)
83 PRK14965 DNA polymerase III su 98.8 2.1E-06 4.6E-11 85.8 22.9 190 45-252 13-221 (576)
84 PRK14086 dnaA chromosomal repl 98.7 4.2E-06 9E-11 82.7 23.7 189 45-256 286-492 (617)
85 PRK14088 dnaA chromosomal repl 98.7 7.7E-07 1.7E-11 86.2 18.5 189 45-256 103-309 (440)
86 CHL00095 clpC Clp protease ATP 98.7 1.8E-07 3.9E-12 97.6 14.4 175 48-243 179-378 (821)
87 PRK14971 DNA polymerase III su 98.7 3.4E-06 7.4E-11 84.7 22.9 183 46-253 15-223 (614)
88 PRK05563 DNA polymerase III su 98.7 4.9E-06 1.1E-10 82.9 23.8 196 45-253 13-221 (559)
89 TIGR01242 26Sp45 26S proteasom 98.7 2.6E-07 5.7E-12 87.6 14.0 183 46-253 120-336 (364)
90 PRK14948 DNA polymerase III su 98.7 5.5E-06 1.2E-10 83.2 23.3 197 46-254 14-224 (620)
91 PRK06620 hypothetical protein; 98.7 6.5E-07 1.4E-11 78.0 14.1 169 45-256 14-193 (214)
92 PRK10865 protein disaggregatio 98.7 7.9E-07 1.7E-11 92.9 16.7 148 48-220 178-353 (857)
93 PRK03992 proteasome-activating 98.7 7E-07 1.5E-11 85.2 15.0 182 47-253 130-345 (389)
94 TIGR02881 spore_V_K stage V sp 98.6 6.4E-07 1.4E-11 80.9 13.9 133 70-222 40-192 (261)
95 COG3267 ExeA Type II secretory 98.6 2.7E-06 5.8E-11 73.7 16.7 179 70-256 49-249 (269)
96 TIGR03346 chaperone_ClpB ATP-d 98.6 7.4E-07 1.6E-11 93.4 16.1 152 48-220 173-348 (852)
97 PRK07399 DNA polymerase III su 98.6 4.7E-06 1E-10 76.9 19.5 193 48-254 4-223 (314)
98 PHA02544 44 clamp loader, smal 98.6 1.7E-06 3.7E-11 80.6 16.7 177 45-247 18-204 (316)
99 PRK12422 chromosomal replicati 98.6 5.1E-06 1.1E-10 80.4 20.2 184 45-250 109-311 (445)
100 PRK11034 clpA ATP-dependent Cl 98.6 6.3E-07 1.4E-11 91.6 13.8 152 48-220 186-361 (758)
101 KOG0989 Replication factor C, 98.6 3.5E-06 7.6E-11 74.7 15.7 195 45-256 33-234 (346)
102 KOG2543 Origin recognition com 98.5 2.5E-06 5.5E-11 77.8 14.4 166 46-220 4-192 (438)
103 PF05621 TniB: Bacterial TniB 98.5 7.3E-06 1.6E-10 73.6 16.9 204 46-253 32-262 (302)
104 PRK05707 DNA polymerase III su 98.5 6.2E-06 1.3E-10 76.6 16.7 93 154-252 107-203 (328)
105 TIGR02903 spore_lon_C ATP-depe 98.5 3.1E-06 6.8E-11 85.2 15.7 49 45-96 151-199 (615)
106 COG1373 Predicted ATPase (AAA+ 98.5 1.1E-05 2.4E-10 77.1 18.2 239 52-338 21-268 (398)
107 TIGR03689 pup_AAA proteasome A 98.5 4.3E-06 9.3E-11 81.4 15.3 157 48-221 182-378 (512)
108 COG0593 DnaA ATPase involved i 98.5 1.2E-05 2.5E-10 75.7 17.1 187 45-253 85-287 (408)
109 PF00004 AAA: ATPase family as 98.4 1.2E-06 2.7E-11 70.1 8.9 23 75-97 1-23 (132)
110 PF05673 DUF815: Protein of un 98.4 3.7E-05 7.9E-10 67.0 17.0 119 45-191 24-151 (249)
111 PTZ00454 26S protease regulato 98.4 1.1E-05 2.5E-10 76.7 15.2 184 46-254 143-360 (398)
112 TIGR02880 cbbX_cfxQ probable R 98.4 2E-05 4.3E-10 71.9 16.2 129 73-221 59-208 (284)
113 KOG2227 Pre-initiation complex 98.4 1.7E-05 3.6E-10 74.4 15.4 207 45-256 147-372 (529)
114 CHL00181 cbbX CbbX; Provisiona 98.4 4.7E-05 1E-09 69.5 18.4 131 72-222 59-210 (287)
115 CHL00176 ftsH cell division pr 98.3 1.7E-05 3.6E-10 79.9 16.0 182 48-254 183-397 (638)
116 COG2812 DnaX DNA polymerase II 98.3 1.8E-05 3.8E-10 76.8 14.7 193 47-253 15-221 (515)
117 PRK08058 DNA polymerase III su 98.3 6.2E-05 1.3E-09 70.3 17.9 150 49-220 6-181 (329)
118 PRK08769 DNA polymerase III su 98.3 9.3E-05 2E-09 68.2 18.0 181 57-253 13-209 (319)
119 PRK06871 DNA polymerase III su 98.3 8.7E-05 1.9E-09 68.5 17.7 174 58-249 12-200 (325)
120 KOG0744 AAA+-type ATPase [Post 98.3 4.3E-06 9.4E-11 74.6 8.6 79 72-164 177-261 (423)
121 TIGR01241 FtsH_fam ATP-depende 98.2 3.4E-05 7.3E-10 76.3 15.7 183 47-254 54-269 (495)
122 CHL00195 ycf46 Ycf46; Provisio 98.2 1.5E-05 3.3E-10 77.6 12.5 175 48-246 228-429 (489)
123 TIGR03345 VI_ClpV1 type VI sec 98.2 4.2E-05 9.2E-10 79.9 16.1 55 45-99 563-623 (852)
124 PRK13531 regulatory ATPase Rav 98.2 3.2E-05 6.9E-10 74.3 13.7 47 48-99 20-66 (498)
125 TIGR02640 gas_vesic_GvpN gas v 98.2 0.0001 2.2E-09 66.6 16.4 36 57-97 11-46 (262)
126 PRK10536 hypothetical protein; 98.2 1.2E-05 2.5E-10 70.9 9.8 137 45-190 52-212 (262)
127 PRK07993 DNA polymerase III su 98.2 9.7E-05 2.1E-09 68.8 16.4 173 58-249 12-201 (334)
128 cd01128 rho_factor Transcripti 98.2 3.9E-06 8.5E-11 74.6 6.9 94 70-165 14-115 (249)
129 PRK06964 DNA polymerase III su 98.2 0.00058 1.3E-08 63.6 21.4 90 153-252 132-225 (342)
130 PF07693 KAP_NTPase: KAP famil 98.2 0.00014 3.1E-09 67.9 17.7 46 54-99 2-47 (325)
131 PF13177 DNA_pol3_delta2: DNA 98.2 5.3E-05 1.1E-09 63.0 13.1 135 52-209 1-162 (162)
132 smart00382 AAA ATPases associa 98.2 7.6E-06 1.6E-10 65.9 8.0 36 72-107 2-37 (148)
133 COG1222 RPT1 ATP-dependent 26S 98.2 6.4E-05 1.4E-09 68.3 14.1 172 49-246 152-357 (406)
134 PRK08116 hypothetical protein; 98.2 2.7E-05 5.8E-10 70.4 11.8 103 72-191 114-221 (268)
135 PTZ00361 26 proteosome regulat 98.1 3.2E-05 6.9E-10 74.3 12.7 181 48-253 183-397 (438)
136 TIGR00602 rad24 checkpoint pro 98.1 4.2E-05 9E-10 76.6 13.4 199 45-255 81-326 (637)
137 PRK08181 transposase; Validate 98.1 2.3E-05 4.9E-10 70.5 10.6 36 72-107 106-141 (269)
138 PRK06090 DNA polymerase III su 98.1 0.00068 1.5E-08 62.5 20.2 173 58-252 13-201 (319)
139 TIGR01243 CDC48 AAA family ATP 98.1 0.00042 9.1E-09 72.0 21.1 182 48-254 453-666 (733)
140 KOG2228 Origin recognition com 98.1 0.00021 4.6E-09 64.5 15.9 185 31-221 10-219 (408)
141 TIGR01243 CDC48 AAA family ATP 98.1 7.1E-05 1.5E-09 77.7 14.7 174 48-246 178-381 (733)
142 PRK10865 protein disaggregatio 98.1 0.00016 3.5E-09 75.8 17.4 55 45-99 565-625 (857)
143 TIGR02902 spore_lonB ATP-depen 98.1 8.1E-05 1.8E-09 74.0 14.4 47 47-96 64-110 (531)
144 PRK09376 rho transcription ter 98.1 8.4E-06 1.8E-10 75.9 6.5 92 70-164 167-267 (416)
145 KOG0741 AAA+-type ATPase [Post 98.0 0.00034 7.4E-09 66.7 17.0 128 70-220 536-685 (744)
146 TIGR01650 PD_CobS cobaltochela 98.0 0.0005 1.1E-08 63.1 17.8 51 45-100 42-92 (327)
147 PRK12377 putative replication 98.0 4.5E-05 9.8E-10 67.8 10.6 37 71-107 100-136 (248)
148 COG0470 HolB ATPase involved i 98.0 0.00015 3.2E-09 67.8 14.8 143 49-212 2-172 (325)
149 TIGR00767 rho transcription te 98.0 1.5E-05 3.3E-10 74.6 7.8 93 70-165 166-267 (415)
150 PLN00020 ribulose bisphosphate 98.0 0.00022 4.7E-09 66.0 15.0 154 70-247 146-333 (413)
151 COG0466 Lon ATP-dependent Lon 98.0 5.3E-05 1.1E-09 74.8 11.7 162 47-222 322-509 (782)
152 KOG0733 Nuclear AAA ATPase (VC 98.0 4.6E-05 9.9E-10 73.7 10.9 174 47-245 189-395 (802)
153 PRK07952 DNA replication prote 98.0 5.9E-05 1.3E-09 66.8 10.9 50 57-107 85-134 (244)
154 PF01695 IstB_IS21: IstB-like 98.0 1E-05 2.3E-10 68.3 5.4 37 71-107 46-82 (178)
155 PF03215 Rad17: Rad17 cell cyc 98.0 4.6E-05 1E-09 74.8 10.5 61 45-107 16-78 (519)
156 KOG0991 Replication factor C, 98.0 0.00061 1.3E-08 58.4 15.5 50 46-98 25-74 (333)
157 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00043 9.2E-09 72.9 18.1 54 46-99 563-622 (852)
158 TIGR02639 ClpA ATP-dependent C 98.0 0.00046 1E-08 71.6 18.0 52 46-97 452-509 (731)
159 PRK04132 replication factor C 98.0 0.0014 3E-08 67.9 20.9 159 77-256 569-735 (846)
160 PRK09183 transposase/IS protei 97.9 5.3E-05 1.1E-09 68.1 9.4 37 71-107 101-137 (259)
161 COG0542 clpA ATP-binding subun 97.9 0.00012 2.5E-09 74.2 12.6 153 47-220 169-345 (786)
162 CHL00095 clpC Clp protease ATP 97.9 0.0002 4.2E-09 75.2 14.8 53 47-99 508-566 (821)
163 TIGR00763 lon ATP-dependent pr 97.9 0.00011 2.4E-09 76.5 12.8 160 48-221 320-505 (775)
164 PRK10787 DNA-binding ATP-depen 97.9 0.00016 3.4E-09 74.9 13.6 161 47-221 321-506 (784)
165 PRK08939 primosomal protein Dn 97.9 9.7E-05 2.1E-09 68.0 10.9 56 52-107 135-191 (306)
166 PF10236 DAP3: Mitochondrial r 97.9 0.00076 1.6E-08 62.3 16.6 48 202-249 258-306 (309)
167 PRK08699 DNA polymerase III su 97.9 0.00057 1.2E-08 63.5 15.5 86 153-248 113-202 (325)
168 PRK11331 5-methylcytosine-spec 97.9 5.3E-05 1.1E-09 72.2 8.5 105 47-164 174-283 (459)
169 PF14532 Sigma54_activ_2: Sigm 97.9 3.9E-05 8.5E-10 62.1 6.7 45 51-96 1-45 (138)
170 PRK06526 transposase; Provisio 97.9 4.3E-05 9.4E-10 68.3 7.2 36 71-106 97-132 (254)
171 KOG2004 Mitochondrial ATP-depe 97.8 0.00037 8E-09 68.9 13.8 160 48-221 411-596 (906)
172 PRK04296 thymidine kinase; Pro 97.8 3.8E-05 8.2E-10 65.8 6.1 110 73-191 3-116 (190)
173 cd01120 RecA-like_NTPases RecA 97.8 9.2E-05 2E-09 61.4 8.4 34 74-107 1-34 (165)
174 COG1484 DnaC DNA replication p 97.8 0.00018 3.8E-09 64.5 10.5 74 71-163 104-177 (254)
175 KOG1514 Origin recognition com 97.8 0.0014 3E-08 64.8 17.2 175 45-224 393-592 (767)
176 COG0542 clpA ATP-binding subun 97.8 0.00023 5.1E-09 72.0 12.3 121 46-176 489-618 (786)
177 TIGR01817 nifA Nif-specific re 97.8 0.00048 1E-08 69.0 14.7 51 46-97 194-244 (534)
178 PF00158 Sigma54_activat: Sigm 97.8 0.00014 3E-09 60.8 9.1 45 50-95 1-45 (168)
179 KOG1969 DNA replication checkp 97.8 6.4E-05 1.4E-09 74.2 7.8 75 70-164 324-398 (877)
180 PRK15429 formate hydrogenlyase 97.8 0.0018 4E-08 66.8 19.0 50 46-96 374-423 (686)
181 PRK06921 hypothetical protein; 97.8 8.2E-05 1.8E-09 67.1 8.0 37 71-107 116-153 (266)
182 KOG0735 AAA+-type ATPase [Post 97.8 0.0032 6.8E-08 62.5 19.1 164 70-254 429-618 (952)
183 PRK11034 clpA ATP-dependent Cl 97.8 0.00044 9.6E-09 71.1 14.1 52 46-97 456-513 (758)
184 PRK06835 DNA replication prote 97.8 0.0002 4.3E-09 66.5 10.5 36 72-107 183-218 (329)
185 cd01131 PilT Pilus retraction 97.8 9.1E-05 2E-09 63.9 7.8 106 73-189 2-107 (198)
186 PF13604 AAA_30: AAA domain; P 97.8 0.00031 6.8E-09 60.4 10.7 111 57-189 7-129 (196)
187 cd01394 radB RadB. The archaea 97.8 0.00013 2.7E-09 64.1 8.4 50 57-107 5-54 (218)
188 PRK11608 pspF phage shock prot 97.7 0.0014 3.1E-08 61.1 15.7 48 47-95 5-52 (326)
189 PRK12608 transcription termina 97.7 0.00015 3.3E-09 67.5 9.0 101 58-163 121-230 (380)
190 KOG1970 Checkpoint RAD17-RFC c 97.7 0.001 2.2E-08 64.0 14.5 56 48-106 82-142 (634)
191 PF04665 Pox_A32: Poxvirus A32 97.7 3.4E-05 7.3E-10 67.7 4.3 36 72-107 13-48 (241)
192 PF07728 AAA_5: AAA domain (dy 97.7 2.1E-05 4.5E-10 63.8 2.8 25 75-99 2-26 (139)
193 TIGR02974 phageshock_pspF psp 97.7 0.00078 1.7E-08 62.8 13.6 46 50-96 1-46 (329)
194 PRK05022 anaerobic nitric oxid 97.7 0.0017 3.7E-08 64.5 16.7 51 46-97 185-235 (509)
195 PF02562 PhoH: PhoH-like prote 97.7 0.00024 5.1E-09 61.0 9.2 130 52-190 4-155 (205)
196 PRK09361 radB DNA repair and r 97.7 0.00016 3.4E-09 63.9 8.3 49 58-107 10-58 (225)
197 PRK09354 recA recombinase A; P 97.7 0.0002 4.4E-09 66.4 9.3 80 27-107 9-95 (349)
198 PRK06067 flagellar accessory p 97.7 0.0002 4.4E-09 63.6 9.0 50 57-107 11-60 (234)
199 PHA00729 NTP-binding motif con 97.7 0.00044 9.6E-09 60.0 10.5 28 70-97 15-42 (226)
200 TIGR01420 pilT_fam pilus retra 97.7 0.00024 5.1E-09 66.8 9.2 95 71-173 121-215 (343)
201 TIGR02237 recomb_radB DNA repa 97.7 0.00015 3.2E-09 63.2 7.3 38 70-107 10-47 (209)
202 PTZ00494 tuzin-like protein; P 97.7 0.01 2.2E-07 56.2 19.4 166 45-221 368-544 (664)
203 COG1066 Sms Predicted ATP-depe 97.6 0.00031 6.8E-09 65.2 9.5 100 55-163 77-178 (456)
204 PRK06696 uridine kinase; Valid 97.6 0.00011 2.4E-09 64.7 6.4 48 52-99 2-49 (223)
205 PHA02244 ATPase-like protein 97.6 0.00048 1E-08 64.1 10.7 54 45-99 93-146 (383)
206 COG4088 Predicted nucleotide k 97.6 0.00023 5E-09 59.8 7.3 35 73-107 2-36 (261)
207 PF13207 AAA_17: AAA domain; P 97.6 5.6E-05 1.2E-09 59.5 3.6 23 74-96 1-23 (121)
208 KOG0739 AAA+-type ATPase [Post 97.6 0.00093 2E-08 59.4 11.3 172 48-246 133-335 (439)
209 PRK11889 flhF flagellar biosyn 97.6 0.00091 2E-08 62.7 11.8 38 70-107 239-276 (436)
210 KOG0743 AAA+-type ATPase [Post 97.6 0.0029 6.3E-08 59.7 15.1 26 72-97 235-260 (457)
211 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0019 4.2E-08 62.9 14.0 130 71-222 544-693 (802)
212 cd00983 recA RecA is a bacter 97.6 0.00017 3.8E-09 66.3 6.8 52 55-107 38-90 (325)
213 KOG0730 AAA+-type ATPase [Post 97.6 0.00036 7.7E-09 68.4 9.2 152 70-246 466-637 (693)
214 KOG2035 Replication factor C, 97.6 0.013 2.8E-07 51.8 17.7 202 50-271 15-258 (351)
215 COG0464 SpoVK ATPases of the A 97.6 0.00091 2E-08 66.3 12.3 152 70-244 274-445 (494)
216 cd01121 Sms Sms (bacterial rad 97.5 0.0004 8.7E-09 65.6 8.9 50 57-107 68-117 (372)
217 TIGR02012 tigrfam_recA protein 97.5 0.00022 4.7E-09 65.6 6.8 52 55-107 38-90 (321)
218 PF00448 SRP54: SRP54-type pro 97.5 0.00016 3.5E-09 62.0 5.4 36 72-107 1-36 (196)
219 PRK14974 cell division protein 97.5 0.00082 1.8E-08 62.4 10.2 36 71-106 139-174 (336)
220 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00011 2.4E-09 68.1 4.4 50 49-98 52-104 (361)
221 PRK10733 hflB ATP-dependent me 97.5 0.0016 3.5E-08 66.3 13.2 156 72-252 185-364 (644)
222 COG1223 Predicted ATPase (AAA+ 97.5 0.00087 1.9E-08 58.5 9.4 173 48-245 121-318 (368)
223 cd01393 recA_like RecA is a b 97.5 0.00067 1.5E-08 59.8 9.2 48 59-107 7-60 (226)
224 COG2607 Predicted ATPase (AAA+ 97.5 0.0021 4.6E-08 55.5 11.6 60 46-107 58-120 (287)
225 KOG0731 AAA+-type ATPase conta 97.5 0.0013 2.9E-08 66.3 11.9 177 48-249 311-521 (774)
226 PRK05541 adenylylsulfate kinas 97.5 0.00042 9.1E-09 58.6 7.5 38 70-107 5-42 (176)
227 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0019 4.2E-08 53.0 10.8 118 73-192 3-139 (159)
228 COG1618 Predicted nucleotide k 97.5 0.00017 3.6E-09 58.2 4.4 35 72-106 5-40 (179)
229 PRK07261 topology modulation p 97.5 0.00056 1.2E-08 57.5 7.8 23 74-96 2-24 (171)
230 PRK08118 topology modulation p 97.4 0.00014 3.1E-09 60.8 4.2 24 74-97 3-26 (167)
231 TIGR00416 sms DNA repair prote 97.4 0.00068 1.5E-08 65.9 9.0 54 53-107 76-129 (454)
232 KOG0734 AAA+-type ATPase conta 97.4 0.00094 2E-08 63.9 9.4 42 54-95 313-360 (752)
233 PRK07667 uridine kinase; Provi 97.4 0.00045 9.8E-09 59.3 6.9 43 57-100 3-45 (193)
234 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00093 2E-08 59.3 9.2 47 60-107 8-60 (235)
235 TIGR00708 cobA cob(I)alamin ad 97.4 0.0013 2.8E-08 54.8 9.1 121 71-192 4-141 (173)
236 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00092 2E-08 60.3 8.8 92 71-174 79-170 (264)
237 PRK11823 DNA repair protein Ra 97.4 0.00091 2E-08 65.0 9.3 52 55-107 64-115 (446)
238 PRK11388 DNA-binding transcrip 97.4 0.0064 1.4E-07 62.3 15.9 50 46-96 323-372 (638)
239 PF07724 AAA_2: AAA domain (Cd 97.4 0.00073 1.6E-08 56.6 7.5 36 72-107 3-39 (171)
240 TIGR02238 recomb_DMC1 meiotic 97.4 0.0014 3.1E-08 60.5 10.0 50 57-107 82-137 (313)
241 PRK10820 DNA-binding transcrip 97.4 0.014 3.1E-07 58.1 17.8 50 45-95 201-250 (520)
242 PF03308 ArgK: ArgK protein; 97.3 0.00052 1.1E-08 60.3 6.2 51 56-107 14-64 (266)
243 PRK00771 signal recognition pa 97.3 0.0031 6.6E-08 60.8 11.9 37 71-107 94-130 (437)
244 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.001 2.3E-08 59.1 8.2 50 57-107 7-56 (237)
245 PRK05973 replicative DNA helic 97.3 0.00066 1.4E-08 59.7 6.6 38 70-107 62-99 (237)
246 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0021 4.5E-08 54.6 9.6 23 74-96 1-23 (183)
247 KOG0736 Peroxisome assembly fa 97.3 0.041 8.8E-07 55.4 19.3 99 43-164 666-775 (953)
248 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.00086 1.9E-08 63.1 7.4 102 70-189 60-166 (362)
249 PF01583 APS_kinase: Adenylyls 97.3 0.00054 1.2E-08 56.0 5.3 36 72-107 2-37 (156)
250 TIGR00064 ftsY signal recognit 97.2 0.0021 4.5E-08 58.2 9.5 38 70-107 70-107 (272)
251 CHL00206 ycf2 Ycf2; Provisiona 97.2 0.0027 6E-08 69.7 11.6 27 70-96 1628-1654(2281)
252 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00059 1.3E-08 54.2 4.9 42 55-97 6-47 (133)
253 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0015 3.3E-08 58.6 7.9 39 70-108 67-105 (274)
254 COG2805 PilT Tfp pilus assembl 97.2 0.0033 7.1E-08 56.2 9.8 107 70-188 123-229 (353)
255 cd00544 CobU Adenosylcobinamid 97.2 0.001 2.3E-08 55.5 6.4 30 75-107 2-31 (169)
256 TIGR02655 circ_KaiC circadian 97.2 0.00097 2.1E-08 65.7 7.2 52 55-107 247-298 (484)
257 TIGR02329 propionate_PrpR prop 97.2 0.017 3.8E-07 57.2 15.9 47 48-95 212-258 (526)
258 PRK15424 propionate catabolism 97.2 0.005 1.1E-07 61.0 12.1 47 48-95 219-265 (538)
259 cd03247 ABCC_cytochrome_bd The 97.2 0.0018 3.9E-08 54.8 8.0 27 70-96 26-52 (178)
260 PRK15455 PrkA family serine pr 97.2 0.00052 1.1E-08 67.1 5.1 50 49-99 77-130 (644)
261 COG1116 TauB ABC-type nitrate/ 97.2 0.00073 1.6E-08 58.9 5.4 94 70-163 27-158 (248)
262 PLN03187 meiotic recombination 97.2 0.0055 1.2E-07 57.2 11.6 49 58-107 113-167 (344)
263 cd03238 ABC_UvrA The excision 97.2 0.002 4.3E-08 54.3 7.9 25 70-94 19-43 (176)
264 COG1703 ArgK Putative periplas 97.2 0.00087 1.9E-08 59.8 5.9 49 58-107 38-86 (323)
265 COG0467 RAD55 RecA-superfamily 97.2 0.0016 3.5E-08 58.7 8.0 45 62-107 14-58 (260)
266 PRK05986 cob(I)alamin adenolsy 97.1 0.0025 5.5E-08 53.8 8.4 120 71-192 21-159 (191)
267 PRK14722 flhF flagellar biosyn 97.1 0.0069 1.5E-07 57.0 12.2 38 70-107 135-174 (374)
268 PF08433 KTI12: Chromatin asso 97.1 0.0014 3E-08 59.1 7.3 35 73-107 2-36 (270)
269 cd02027 APSK Adenosine 5'-phos 97.1 0.0034 7.3E-08 51.4 9.0 26 74-99 1-26 (149)
270 PTZ00035 Rad51 protein; Provis 97.1 0.0057 1.2E-07 57.2 11.5 51 56-107 103-159 (337)
271 PRK05439 pantothenate kinase; 97.1 0.0016 3.5E-08 59.7 7.7 39 60-98 74-112 (311)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0016 3.5E-08 53.0 7.0 105 70-195 24-131 (144)
273 PRK05342 clpX ATP-dependent pr 97.1 0.0013 2.9E-08 63.0 7.4 54 45-98 68-134 (412)
274 cd01122 GP4d_helicase GP4d_hel 97.1 0.006 1.3E-07 55.4 11.5 38 70-107 28-66 (271)
275 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0009 2E-08 60.3 5.9 38 70-107 34-71 (259)
276 KOG0738 AAA+-type ATPase [Post 97.1 0.0079 1.7E-07 55.6 11.8 70 25-97 191-270 (491)
277 cd03115 SRP The signal recogni 97.1 0.0034 7.4E-08 52.8 9.2 34 74-107 2-35 (173)
278 PF13238 AAA_18: AAA domain; P 97.1 0.00041 8.9E-09 55.0 3.3 22 75-96 1-22 (129)
279 cd02019 NK Nucleoside/nucleoti 97.1 0.00085 1.9E-08 46.9 4.5 23 74-96 1-23 (69)
280 COG2884 FtsE Predicted ATPase 97.1 0.0058 1.3E-07 51.0 9.9 55 142-198 144-204 (223)
281 PF13671 AAA_33: AAA domain; P 97.1 0.00044 9.6E-09 56.1 3.5 24 74-97 1-24 (143)
282 PRK10923 glnG nitrogen regulat 97.1 0.018 3.9E-07 56.8 15.4 49 47-96 137-185 (469)
283 cd03214 ABC_Iron-Siderophores_ 97.1 0.0017 3.8E-08 55.0 7.1 122 70-194 23-161 (180)
284 COG4619 ABC-type uncharacteriz 97.1 0.0056 1.2E-07 50.0 9.4 25 72-96 29-53 (223)
285 KOG0735 AAA+-type ATPase [Post 97.1 0.0095 2.1E-07 59.2 12.8 152 72-248 701-872 (952)
286 PF13245 AAA_19: Part of AAA d 97.1 0.00088 1.9E-08 47.8 4.4 26 72-97 10-35 (76)
287 PF00485 PRK: Phosphoribulokin 97.1 0.00052 1.1E-08 59.0 3.8 27 74-100 1-27 (194)
288 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0033 7.1E-08 52.6 8.5 119 70-194 25-151 (166)
289 PF00910 RNA_helicase: RNA hel 97.1 0.00038 8.3E-09 53.5 2.6 25 75-99 1-25 (107)
290 COG1126 GlnQ ABC-type polar am 97.1 0.0033 7.1E-08 53.6 8.2 56 142-197 143-202 (240)
291 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0013 2.9E-08 58.9 6.4 27 74-100 1-27 (249)
292 COG1136 SalX ABC-type antimicr 97.1 0.0048 1E-07 53.6 9.5 55 142-197 149-209 (226)
293 PRK05917 DNA polymerase III su 97.1 0.045 9.7E-07 49.7 16.0 127 57-208 6-154 (290)
294 cd03228 ABCC_MRP_Like The MRP 97.1 0.0021 4.6E-08 54.0 7.2 28 70-97 26-53 (171)
295 COG4608 AppF ABC-type oligopep 97.0 0.0023 5E-08 56.6 7.5 93 70-163 37-137 (268)
296 cd01124 KaiC KaiC is a circadi 97.0 0.0016 3.4E-08 55.5 6.4 33 75-107 2-34 (187)
297 cd03216 ABC_Carb_Monos_I This 97.0 0.0011 2.3E-08 55.3 5.2 118 70-194 24-145 (163)
298 TIGR03499 FlhF flagellar biosy 97.0 0.0037 8.1E-08 57.0 9.1 37 71-107 193-231 (282)
299 PF00625 Guanylate_kin: Guanyl 97.0 0.00084 1.8E-08 57.1 4.6 36 72-107 2-37 (183)
300 PRK04328 hypothetical protein; 97.0 0.0024 5.2E-08 57.2 7.6 49 58-107 10-58 (249)
301 PRK06762 hypothetical protein; 97.0 0.00072 1.6E-08 56.5 3.9 25 72-96 2-26 (166)
302 PF06745 KaiC: KaiC; InterPro 97.0 0.00098 2.1E-08 58.8 4.9 47 60-107 8-55 (226)
303 PF07726 AAA_3: ATPase family 97.0 0.00052 1.1E-08 53.7 2.7 31 75-105 2-32 (131)
304 PRK06547 hypothetical protein; 97.0 0.0013 2.8E-08 55.2 5.2 27 70-96 13-39 (172)
305 PTZ00301 uridine kinase; Provi 97.0 0.00078 1.7E-08 58.4 4.0 29 71-99 2-30 (210)
306 PRK08233 hypothetical protein; 97.0 0.00068 1.5E-08 57.5 3.6 26 72-97 3-28 (182)
307 PRK04040 adenylate kinase; Pro 97.0 0.00085 1.8E-08 57.2 4.1 29 72-100 2-30 (188)
308 COG0468 RecA RecA/RadA recombi 97.0 0.0058 1.3E-07 55.1 9.6 97 60-162 49-150 (279)
309 KOG0652 26S proteasome regulat 97.0 0.038 8.2E-07 48.5 14.0 51 46-96 169-229 (424)
310 TIGR00554 panK_bact pantothena 97.0 0.0026 5.6E-08 57.9 7.4 28 70-97 60-87 (290)
311 COG0465 HflB ATP-dependent Zn 97.0 0.0094 2E-07 59.0 11.6 178 45-248 147-357 (596)
312 COG3854 SpoIIIAA ncharacterize 97.0 0.0065 1.4E-07 52.2 9.1 27 73-99 138-164 (308)
313 COG2804 PulE Type II secretory 97.0 0.0027 5.8E-08 61.0 7.6 114 57-190 247-360 (500)
314 PRK08533 flagellar accessory p 96.9 0.002 4.4E-08 56.9 6.3 38 70-107 22-59 (230)
315 PF03266 NTPase_1: NTPase; In 96.9 0.0012 2.6E-08 55.2 4.5 25 75-99 2-26 (168)
316 COG4240 Predicted kinase [Gene 96.9 0.0047 1E-07 52.9 7.9 82 70-155 48-135 (300)
317 PRK07132 DNA polymerase III su 96.9 0.33 7.2E-06 44.5 22.0 143 57-220 5-161 (299)
318 PRK14531 adenylate kinase; Pro 96.9 0.0035 7.6E-08 53.3 7.4 24 73-96 3-26 (183)
319 PRK05703 flhF flagellar biosyn 96.9 0.013 2.8E-07 56.6 12.0 36 72-107 221-258 (424)
320 PRK12726 flagellar biosynthesi 96.9 0.0079 1.7E-07 56.4 10.0 38 70-107 204-241 (407)
321 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0024 5.2E-08 56.4 6.5 49 58-107 7-55 (229)
322 TIGR02524 dot_icm_DotB Dot/Icm 96.9 0.0026 5.6E-08 59.9 7.0 98 71-174 133-233 (358)
323 PF13086 AAA_11: AAA domain; P 96.9 0.0025 5.4E-08 56.2 6.6 36 56-96 6-41 (236)
324 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0032 7E-08 53.1 6.9 107 70-195 23-136 (177)
325 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0055 1.2E-07 53.4 8.6 24 72-95 29-52 (213)
326 cd00227 CPT Chloramphenicol (C 96.9 0.001 2.2E-08 56.1 3.9 25 73-97 3-27 (175)
327 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.2E-08 56.8 3.9 26 71-96 2-27 (188)
328 PRK05480 uridine/cytidine kina 96.9 0.001 2.3E-08 57.9 4.0 27 70-96 4-30 (209)
329 PF12775 AAA_7: P-loop contain 96.9 0.001 2.2E-08 60.2 4.0 27 72-98 33-59 (272)
330 PRK06217 hypothetical protein; 96.9 0.0047 1E-07 52.5 7.8 24 74-97 3-26 (183)
331 COG1117 PstB ABC-type phosphat 96.9 0.0058 1.3E-07 52.0 7.9 44 47-95 13-56 (253)
332 TIGR02858 spore_III_AA stage I 96.9 0.012 2.6E-07 53.1 10.6 117 71-193 110-231 (270)
333 PRK12723 flagellar biosynthesi 96.8 0.0062 1.3E-07 57.8 9.1 27 71-97 173-199 (388)
334 KOG0651 26S proteasome regulat 96.8 0.0035 7.7E-08 56.2 6.9 52 49-100 133-194 (388)
335 TIGR02525 plasmid_TraJ plasmid 96.8 0.0037 7.9E-08 59.0 7.5 96 72-174 149-246 (372)
336 KOG3928 Mitochondrial ribosome 96.8 0.057 1.2E-06 50.5 14.8 58 199-256 402-460 (461)
337 TIGR00390 hslU ATP-dependent p 96.8 0.0035 7.7E-08 59.3 7.3 53 48-100 12-75 (441)
338 KOG0924 mRNA splicing factor A 96.8 0.0058 1.3E-07 60.2 8.8 34 57-95 361-394 (1042)
339 PF06309 Torsin: Torsin; Inte 96.8 0.0029 6.3E-08 49.4 5.6 47 50-96 27-77 (127)
340 PRK15115 response regulator Gl 96.8 0.083 1.8E-06 51.7 17.3 49 47-96 133-181 (444)
341 PRK00131 aroK shikimate kinase 96.8 0.0012 2.5E-08 55.6 3.8 26 71-96 3-28 (175)
342 TIGR00235 udk uridine kinase. 96.8 0.0013 2.7E-08 57.3 4.0 28 70-97 4-31 (207)
343 TIGR00764 lon_rel lon-related 96.8 0.0025 5.3E-08 64.4 6.6 57 46-107 16-73 (608)
344 PF00154 RecA: recA bacterial 96.8 0.0097 2.1E-07 54.8 9.8 53 54-107 35-88 (322)
345 PRK00279 adk adenylate kinase; 96.8 0.0046 1E-07 54.1 7.5 23 74-96 2-24 (215)
346 cd03246 ABCC_Protease_Secretio 96.8 0.0033 7.1E-08 52.9 6.3 27 70-96 26-52 (173)
347 COG1875 NYN ribonuclease and A 96.8 0.0069 1.5E-07 55.6 8.5 44 47-93 223-266 (436)
348 PRK14528 adenylate kinase; Pro 96.8 0.0059 1.3E-07 52.0 7.8 24 73-96 2-25 (186)
349 PF00437 T2SE: Type II/IV secr 96.8 0.0064 1.4E-07 55.2 8.6 125 48-188 104-228 (270)
350 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0057 1.2E-07 53.8 8.0 48 59-107 4-51 (224)
351 PRK10875 recD exonuclease V su 96.8 0.0049 1.1E-07 62.1 8.4 27 72-98 167-193 (615)
352 COG0194 Gmk Guanylate kinase [ 96.8 0.0015 3.3E-08 54.3 4.0 26 71-96 3-28 (191)
353 COG2874 FlaH Predicted ATPases 96.8 0.01 2.2E-07 50.6 8.8 49 58-107 15-63 (235)
354 KOG0727 26S proteasome regulat 96.8 0.0022 4.7E-08 55.7 5.0 51 50-100 157-217 (408)
355 PRK00889 adenylylsulfate kinas 96.8 0.0023 5E-08 54.0 5.2 36 71-106 3-38 (175)
356 cd02028 UMPK_like Uridine mono 96.8 0.0019 4E-08 54.7 4.6 27 74-100 1-27 (179)
357 TIGR02533 type_II_gspE general 96.8 0.0054 1.2E-07 60.2 8.4 92 71-174 241-332 (486)
358 PF03205 MobB: Molybdopterin g 96.8 0.002 4.3E-08 52.1 4.5 32 73-104 1-32 (140)
359 PRK03839 putative kinase; Prov 96.8 0.0012 2.7E-08 55.9 3.5 24 74-97 2-25 (180)
360 TIGR02915 PEP_resp_reg putativ 96.8 0.047 1E-06 53.4 15.1 48 48-96 139-186 (445)
361 PRK09270 nucleoside triphospha 96.8 0.0025 5.3E-08 56.4 5.5 31 70-100 31-61 (229)
362 KOG0737 AAA+-type ATPase [Post 96.8 0.012 2.6E-07 54.1 9.9 56 45-100 89-155 (386)
363 PRK10867 signal recognition pa 96.8 0.005 1.1E-07 59.2 7.9 38 70-107 98-136 (433)
364 COG0714 MoxR-like ATPases [Gen 96.8 0.0023 5E-08 59.9 5.6 49 48-101 24-72 (329)
365 PRK13765 ATP-dependent proteas 96.8 0.002 4.4E-08 65.0 5.4 75 45-129 28-103 (637)
366 PF00406 ADK: Adenylate kinase 96.8 0.0025 5.4E-08 52.3 5.1 20 77-96 1-20 (151)
367 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0047 1E-07 52.0 6.8 27 70-96 24-50 (173)
368 PF13481 AAA_25: AAA domain; P 96.7 0.01 2.2E-07 50.8 9.1 28 71-98 31-58 (193)
369 KOG1051 Chaperone HSP104 and r 96.7 0.017 3.7E-07 59.8 11.9 105 47-164 561-671 (898)
370 PF05970 PIF1: PIF1-like helic 96.7 0.0035 7.5E-08 59.5 6.6 37 70-106 20-56 (364)
371 PRK09519 recA DNA recombinatio 96.7 0.0079 1.7E-07 61.7 9.3 53 54-107 42-95 (790)
372 KOG0740 AAA+-type ATPase [Post 96.7 0.015 3.2E-07 55.2 10.4 30 70-99 184-213 (428)
373 PF03193 DUF258: Protein of un 96.7 0.0029 6.2E-08 52.1 5.0 37 53-95 22-58 (161)
374 cd00046 DEXDc DEAD-like helica 96.7 0.013 2.8E-07 46.6 8.9 34 74-107 2-37 (144)
375 PRK10436 hypothetical protein; 96.7 0.0038 8.3E-08 60.7 6.7 103 70-188 216-318 (462)
376 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.0045 9.8E-08 53.4 6.5 26 70-95 24-49 (200)
377 TIGR01351 adk adenylate kinase 96.7 0.0076 1.6E-07 52.5 7.9 22 75-96 2-23 (210)
378 PRK09435 membrane ATPase/prote 96.7 0.0046 9.9E-08 57.4 6.7 49 58-107 43-91 (332)
379 COG0572 Udk Uridine kinase [Nu 96.7 0.0024 5.2E-08 54.9 4.5 29 71-99 7-35 (218)
380 COG1102 Cmk Cytidylate kinase 96.7 0.0015 3.3E-08 52.8 3.1 26 74-99 2-27 (179)
381 cd03232 ABC_PDR_domain2 The pl 96.7 0.01 2.2E-07 50.9 8.5 26 70-95 31-56 (192)
382 PRK03846 adenylylsulfate kinas 96.7 0.0031 6.7E-08 54.4 5.3 38 70-107 22-59 (198)
383 PLN02674 adenylate kinase 96.7 0.013 2.8E-07 51.9 9.2 26 71-96 30-55 (244)
384 cd01428 ADK Adenylate kinase ( 96.7 0.017 3.7E-07 49.4 9.9 22 75-96 2-23 (194)
385 PRK12727 flagellar biosynthesi 96.7 0.017 3.7E-07 56.5 10.6 49 51-99 326-377 (559)
386 PRK14737 gmk guanylate kinase; 96.7 0.0018 3.8E-08 55.2 3.6 27 70-96 2-28 (186)
387 PF06068 TIP49: TIP49 C-termin 96.7 0.0036 7.7E-08 58.0 5.7 59 45-104 21-82 (398)
388 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0068 1.5E-07 55.9 7.5 53 47-99 60-115 (358)
389 TIGR03600 phage_DnaB phage rep 96.6 0.017 3.6E-07 56.1 10.7 72 49-128 173-245 (421)
390 TIGR00959 ffh signal recogniti 96.6 0.0073 1.6E-07 58.1 8.1 27 71-97 98-124 (428)
391 cd00071 GMPK Guanosine monopho 96.6 0.0014 3.1E-08 52.8 2.8 26 74-99 1-26 (137)
392 PF03029 ATP_bind_1: Conserved 96.6 0.0021 4.6E-08 56.9 4.1 31 77-107 1-31 (238)
393 cd03237 ABC_RNaseL_inhibitor_d 96.6 0.0091 2E-07 53.3 8.2 26 71-96 24-49 (246)
394 PRK10751 molybdopterin-guanine 96.6 0.0038 8.2E-08 52.1 5.2 30 70-99 4-33 (173)
395 TIGR02655 circ_KaiC circadian 96.6 0.0068 1.5E-07 59.8 7.8 49 58-107 8-57 (484)
396 PRK04301 radA DNA repair and r 96.6 0.0075 1.6E-07 56.1 7.7 50 57-107 88-143 (317)
397 TIGR02322 phosphon_PhnN phosph 96.6 0.002 4.3E-08 54.5 3.5 25 73-97 2-26 (179)
398 cd02021 GntK Gluconate kinase 96.6 0.0017 3.7E-08 53.2 3.0 23 74-96 1-23 (150)
399 PRK14738 gmk guanylate kinase; 96.6 0.0021 4.6E-08 55.8 3.7 26 70-95 11-36 (206)
400 PRK05818 DNA polymerase III su 96.6 0.5 1.1E-05 42.1 19.3 56 153-208 88-147 (261)
401 cd02025 PanK Pantothenate kina 96.6 0.0028 6.1E-08 55.5 4.5 24 74-97 1-24 (220)
402 PRK07276 DNA polymerase III su 96.6 0.22 4.7E-06 45.4 16.7 67 152-219 103-173 (290)
403 COG1643 HrpA HrpA-like helicas 96.6 0.015 3.3E-07 60.2 10.3 128 55-191 53-205 (845)
404 TIGR01447 recD exodeoxyribonuc 96.6 0.012 2.6E-07 59.2 9.4 27 72-98 160-186 (586)
405 TIGR02236 recomb_radA DNA repa 96.6 0.0091 2E-07 55.4 8.1 49 58-107 82-136 (310)
406 COG2204 AtoC Response regulato 96.6 0.1 2.2E-06 50.5 15.1 50 45-95 138-187 (464)
407 COG0563 Adk Adenylate kinase a 96.6 0.002 4.3E-08 54.4 3.3 22 74-95 2-23 (178)
408 KOG0726 26S proteasome regulat 96.6 0.0074 1.6E-07 53.7 6.8 51 49-99 186-246 (440)
409 PRK05201 hslU ATP-dependent pr 96.5 0.0036 7.9E-08 59.3 5.2 53 48-100 15-78 (443)
410 cd02023 UMPK Uridine monophosp 96.5 0.0032 6.9E-08 54.3 4.5 23 74-96 1-23 (198)
411 PRK00625 shikimate kinase; Pro 96.5 0.0022 4.8E-08 53.8 3.4 24 74-97 2-25 (173)
412 COG1936 Predicted nucleotide k 96.5 0.0019 4.1E-08 53.0 2.8 20 74-93 2-21 (180)
413 PRK14527 adenylate kinase; Pro 96.5 0.0025 5.4E-08 54.6 3.8 27 70-96 4-30 (191)
414 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0042 9.1E-08 51.3 5.0 118 71-196 24-145 (157)
415 cd03233 ABC_PDR_domain1 The pl 96.5 0.016 3.4E-07 50.2 8.7 28 70-97 31-58 (202)
416 TIGR02788 VirB11 P-type DNA tr 96.5 0.0055 1.2E-07 56.7 6.2 92 71-170 143-235 (308)
417 COG3910 Predicted ATPase [Gene 96.5 0.039 8.4E-07 46.1 10.3 25 71-95 36-60 (233)
418 PRK15453 phosphoribulokinase; 96.5 0.0043 9.3E-08 55.7 5.2 38 70-107 3-40 (290)
419 PRK11174 cysteine/glutathione 96.5 0.0094 2E-07 60.6 8.4 27 70-96 374-400 (588)
420 COG1224 TIP49 DNA helicase TIP 96.5 0.0063 1.4E-07 55.7 6.3 56 45-101 36-94 (450)
421 TIGR02868 CydC thiol reductant 96.5 0.0089 1.9E-07 59.9 8.1 26 70-95 359-384 (529)
422 smart00534 MUTSac ATPase domai 96.5 0.0015 3.3E-08 55.6 2.3 22 74-95 1-22 (185)
423 COG1120 FepC ABC-type cobalami 96.5 0.0053 1.2E-07 54.5 5.7 26 70-95 26-51 (258)
424 TIGR01425 SRP54_euk signal rec 96.5 0.024 5.2E-07 54.4 10.4 37 71-107 99-135 (429)
425 TIGR01818 ntrC nitrogen regula 96.5 0.11 2.4E-06 51.1 15.7 49 48-97 134-182 (463)
426 TIGR02538 type_IV_pilB type IV 96.5 0.0053 1.1E-07 61.6 6.3 102 57-174 305-406 (564)
427 KOG2170 ATPase of the AAA+ sup 96.5 0.023 4.9E-07 51.0 9.4 45 55-99 93-137 (344)
428 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.0091 2E-07 52.8 7.0 26 70-95 28-53 (254)
429 TIGR02768 TraA_Ti Ti-type conj 96.5 0.027 5.7E-07 58.6 11.5 34 73-106 369-402 (744)
430 cd02020 CMPK Cytidine monophos 96.5 0.0024 5.2E-08 51.9 3.2 23 74-96 1-23 (147)
431 PRK14529 adenylate kinase; Pro 96.5 0.012 2.6E-07 51.5 7.6 23 75-97 3-25 (223)
432 PRK00300 gmk guanylate kinase; 96.5 0.0028 6E-08 55.0 3.6 27 71-97 4-30 (205)
433 PF02374 ArsA_ATPase: Anion-tr 96.5 0.0044 9.5E-08 57.1 5.1 35 73-107 2-36 (305)
434 COG0378 HypB Ni2+-binding GTPa 96.5 0.0037 8.1E-08 52.4 4.2 35 73-107 14-48 (202)
435 COG2274 SunT ABC-type bacterio 96.5 0.01 2.2E-07 60.8 8.2 26 70-95 497-522 (709)
436 COG4181 Predicted ABC-type tra 96.5 0.079 1.7E-06 43.7 11.5 127 71-198 35-214 (228)
437 cd03213 ABCG_EPDR ABCG transpo 96.5 0.0081 1.8E-07 51.6 6.5 27 70-96 33-59 (194)
438 PRK10463 hydrogenase nickel in 96.4 0.0063 1.4E-07 55.1 5.9 36 70-105 102-137 (290)
439 COG0529 CysC Adenylylsulfate k 96.4 0.0055 1.2E-07 50.4 5.0 36 70-105 21-56 (197)
440 cd02024 NRK1 Nicotinamide ribo 96.4 0.0025 5.3E-08 54.2 3.1 23 74-96 1-23 (187)
441 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0032 7E-08 47.9 3.4 23 71-93 14-36 (107)
442 smart00072 GuKc Guanylate kina 96.4 0.0029 6.2E-08 53.9 3.5 29 72-100 2-30 (184)
443 TIGR01313 therm_gnt_kin carboh 96.4 0.0022 4.7E-08 53.4 2.7 22 75-96 1-22 (163)
444 PF09848 DUF2075: Uncharacteri 96.4 0.012 2.7E-07 55.5 8.1 35 73-107 2-38 (352)
445 PF02367 UPF0079: Uncharacteri 96.4 0.0061 1.3E-07 47.7 4.9 27 70-96 13-39 (123)
446 PF13555 AAA_29: P-loop contai 96.4 0.0037 8.1E-08 42.3 3.2 25 73-97 24-48 (62)
447 PRK13808 adenylate kinase; Pro 96.4 0.011 2.4E-07 54.6 7.4 22 75-96 3-24 (333)
448 TIGR01069 mutS2 MutS2 family p 96.4 0.0051 1.1E-07 63.8 5.8 25 71-95 321-345 (771)
449 PRK14530 adenylate kinase; Pro 96.4 0.003 6.5E-08 55.2 3.6 24 73-96 4-27 (215)
450 COG1072 CoaA Panthothenate kin 96.4 0.013 2.8E-07 52.0 7.4 86 8-102 27-112 (283)
451 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0043 9.3E-08 53.5 4.5 36 70-107 13-48 (199)
452 KOG3347 Predicted nucleotide k 96.4 0.0028 6E-08 50.5 2.9 25 72-96 7-31 (176)
453 PRK13947 shikimate kinase; Pro 96.4 0.0029 6.4E-08 53.0 3.3 25 74-98 3-27 (171)
454 TIGR02782 TrbB_P P-type conjug 96.4 0.011 2.4E-07 54.3 7.4 89 72-171 132-222 (299)
455 cd03243 ABC_MutS_homologs The 96.4 0.0026 5.7E-08 55.0 3.1 24 72-95 29-52 (202)
456 PRK11361 acetoacetate metaboli 96.4 0.14 3E-06 50.3 15.6 48 48-96 143-190 (457)
457 TIGR00041 DTMP_kinase thymidyl 96.4 0.0098 2.1E-07 51.0 6.6 27 73-99 4-30 (195)
458 PRK13764 ATPase; Provisional 96.4 0.011 2.4E-07 59.1 7.7 86 72-171 257-342 (602)
459 PF00006 ATP-synt_ab: ATP synt 96.4 0.0051 1.1E-07 53.4 4.8 29 71-99 14-42 (215)
460 PRK12724 flagellar biosynthesi 96.4 0.034 7.3E-07 53.0 10.6 25 72-96 223-247 (432)
461 TIGR00750 lao LAO/AO transport 96.4 0.0091 2E-07 55.1 6.7 37 70-106 32-68 (300)
462 TIGR03263 guanyl_kin guanylate 96.4 0.0027 5.8E-08 53.8 3.0 24 73-96 2-25 (180)
463 KOG0728 26S proteasome regulat 96.4 0.028 6E-07 49.0 9.0 45 52-96 151-205 (404)
464 KOG0742 AAA+-type ATPase [Post 96.4 0.077 1.7E-06 49.7 12.3 27 70-96 382-408 (630)
465 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.0039 8.5E-08 54.6 3.9 24 71-94 30-53 (222)
466 PRK13949 shikimate kinase; Pro 96.3 0.0035 7.6E-08 52.5 3.5 24 74-97 3-26 (169)
467 PRK09302 circadian clock prote 96.3 0.012 2.7E-07 58.5 8.0 53 54-107 14-67 (509)
468 PF08477 Miro: Miro-like prote 96.3 0.0035 7.6E-08 48.9 3.3 21 75-95 2-22 (119)
469 PRK10416 signal recognition pa 96.3 0.0062 1.3E-07 56.4 5.4 37 71-107 113-149 (318)
470 cd01672 TMPK Thymidine monopho 96.3 0.0095 2.1E-07 51.1 6.3 27 74-100 2-28 (200)
471 PRK12339 2-phosphoglycerate ki 96.3 0.0041 8.8E-08 53.4 3.9 25 72-96 3-27 (197)
472 COG5635 Predicted NTPase (NACH 96.3 0.04 8.6E-07 58.2 12.0 284 71-358 221-555 (824)
473 PRK13657 cyclic beta-1,2-gluca 96.3 0.016 3.5E-07 58.9 8.8 26 70-95 359-384 (588)
474 cd00984 DnaB_C DnaB helicase C 96.3 0.016 3.4E-07 51.6 7.8 38 70-107 11-49 (242)
475 PRK05537 bifunctional sulfate 96.3 0.0094 2E-07 59.7 6.9 53 45-98 366-418 (568)
476 COG0003 ArsA Predicted ATPase 96.3 0.0075 1.6E-07 55.6 5.7 48 72-123 2-49 (322)
477 PLN02200 adenylate kinase fami 96.3 0.0043 9.3E-08 54.9 4.0 26 71-96 42-67 (234)
478 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.042 9.1E-07 47.6 10.1 26 70-95 32-57 (207)
479 COG2842 Uncharacterized ATPase 96.3 0.03 6.5E-07 50.2 9.0 124 29-164 50-176 (297)
480 PRK13889 conjugal transfer rel 96.3 0.051 1.1E-06 57.6 12.2 27 73-99 363-389 (988)
481 PRK06761 hypothetical protein; 96.3 0.006 1.3E-07 55.2 4.7 28 72-99 3-30 (282)
482 cd03300 ABC_PotA_N PotA is an 96.3 0.027 5.8E-07 49.9 8.8 27 70-96 24-50 (232)
483 cd00464 SK Shikimate kinase (S 96.2 0.0041 9E-08 51.0 3.4 22 75-96 2-23 (154)
484 COG4618 ArpD ABC-type protease 96.2 0.023 5E-07 54.6 8.5 25 71-95 361-385 (580)
485 cd03289 ABCC_CFTR2 The CFTR su 96.2 0.022 4.7E-07 51.8 8.3 28 70-97 28-55 (275)
486 PF01078 Mg_chelatase: Magnesi 96.2 0.006 1.3E-07 52.2 4.3 43 48-95 3-45 (206)
487 PRK13768 GTPase; Provisional 96.2 0.0072 1.6E-07 54.2 5.1 35 73-107 3-37 (253)
488 PF13521 AAA_28: AAA domain; P 96.2 0.0038 8.2E-08 52.0 3.1 21 75-95 2-22 (163)
489 PLN02459 probable adenylate ki 96.2 0.025 5.5E-07 50.4 8.4 23 74-96 31-53 (261)
490 PRK14526 adenylate kinase; Pro 96.2 0.021 4.6E-07 49.6 7.9 22 75-96 3-24 (211)
491 PRK14493 putative bifunctional 96.2 0.007 1.5E-07 54.7 5.0 34 73-107 2-35 (274)
492 PRK10646 ADP-binding protein; 96.2 0.0082 1.8E-07 48.9 4.9 43 54-97 11-53 (153)
493 PRK13407 bchI magnesium chelat 96.2 0.0053 1.1E-07 57.1 4.3 48 46-96 6-53 (334)
494 COG1124 DppF ABC-type dipeptid 96.2 0.0051 1.1E-07 53.4 3.8 26 70-95 31-56 (252)
495 TIGR00665 DnaB replicative DNA 96.2 0.038 8.3E-07 53.9 10.5 72 49-128 174-246 (434)
496 cd01125 repA Hexameric Replica 96.2 0.02 4.3E-07 50.9 7.8 24 74-97 3-26 (239)
497 CHL00081 chlI Mg-protoporyphyr 96.2 0.0057 1.2E-07 57.1 4.4 49 46-97 15-63 (350)
498 KOG1532 GTPase XAB1, interacts 96.2 0.0057 1.2E-07 53.9 4.0 37 70-106 17-53 (366)
499 PRK11160 cysteine/glutathione 96.2 0.022 4.9E-07 57.6 9.0 26 70-95 364-389 (574)
500 TIGR01967 DEAH_box_HrpA ATP-de 96.2 0.027 5.8E-07 61.0 9.9 35 58-97 73-107 (1283)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-45 Score=392.82 Aligned_cols=384 Identities=35% Similarity=0.610 Sum_probs=324.2
Q ss_pred CchHHHHHHHHhccCCccccCCCcchHHHHHHHHHHHHhccccc-cccCcccccchhHHHHHHHhccCCCCCceEEEEEc
Q 015918 1 MQRWRSALTEVANLSGFNSHVIRPESKLIEEIVSEVLERLDDTF-ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWG 79 (398)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~-~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G 79 (398)
+++||+|+.+|+++.|+++..-..|+++|++|+.++.+.+...+ .+.+.+|||+..++++..++.... ...++++|+|
T Consensus 136 ~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G 214 (1153)
T PLN03210 136 KIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWG 214 (1153)
T ss_pred HHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc-CceEEEEEEc
Confidence 47999999999999999998756699999999999999998777 677899999999999999997655 6789999999
Q ss_pred CCCccHHHHHHHHHHHhhccCcceEEEeec--hhh---hhc------CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 015918 80 IGGVGKTAIAGAFFSKISRRFEGSYFAHNV--REA---EET------GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 148 (398)
Q Consensus 80 ~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~--~~~---~~~------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 148 (398)
|+|+||||||+.+++.+..+|+..+|+... ... ... .....+...++..+...... .......+..
T Consensus 215 ~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~---~~~~~~~~~~ 291 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI---KIYHLGAMEE 291 (1153)
T ss_pred CCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc---ccCCHHHHHH
Confidence 999999999999999999999888887521 000 000 01123334444444333211 1112356777
Q ss_pred hhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCC
Q 015918 149 RLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 228 (398)
Q Consensus 149 ~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~ 228 (398)
.+.++++||||||+|+..+++.+.....+..+|++||||||+..+.........++++.++.+++++||.++++....++
T Consensus 292 ~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~ 371 (1153)
T PLN03210 292 RLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP 371 (1153)
T ss_pred HHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc
Confidence 88999999999999999999988776666678999999999998887665667899999999999999999998776666
Q ss_pred cchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHHHhccCChhhHHHHHHHhHhcCch-HHHHHHHHhhcCcCC
Q 015918 229 ASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDD-KEKNIFLDIACFLVG 307 (398)
Q Consensus 229 ~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~-~~~~~l~~la~~~~~ 307 (398)
....+++.++++.|+|+||||+.+|..++..+..+|...++++...++..+..+++.+|+.|++ .+|.+|+++|||+.+
T Consensus 372 ~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~ 451 (1153)
T PLN03210 372 DGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNG 451 (1153)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCC
Confidence 6678899999999999999999999999998899999999999988888999999999999976 589999999999998
Q ss_pred cChHHHHHHHHhcCccccccHHHHhhccCeeeccCCceEecHHHHHHHHHHHhhcCCCCCCCcccccCchhHHHHHHhCc
Q 015918 308 EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENM 387 (398)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~H~lir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (398)
.+.+....++...+......++.|++++|++.. .+++.||+++|++++++++++. ..+..|.++|.+.+|+.+|+...
T Consensus 452 ~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 452 EKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred CCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence 888888888877777777889999999999986 6789999999999999998876 67889999999999999999887
Q ss_pred Ccc
Q 015918 388 VSN 390 (398)
Q Consensus 388 ~~~ 390 (398)
++.
T Consensus 530 g~~ 532 (1153)
T PLN03210 530 GTK 532 (1153)
T ss_pred ccc
Confidence 754
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=317.36 Aligned_cols=303 Identities=25% Similarity=0.347 Sum_probs=263.8
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH---hhccCcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
||.+.-++.+.+.|.... ..+++|+|+||+||||||+++.++ +..+|+.++|++ ++...+...+..+++.
T Consensus 161 VG~e~~~~kl~~~L~~d~---~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD---VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC---CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHH
Confidence 999999999999998744 389999999999999999999987 568899999999 7888999999999999
Q ss_pred HHhcCCCCCCCC--ccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHh-cCCCeeEE
Q 015918 128 TLLNDGNMNKFP--NIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN-CGVNKIYQ 204 (398)
Q Consensus 128 ~l~~~~~~~~~~--~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~-~~~~~~~~ 204 (398)
.++......... +.....+.+.|..++++||+||+|+..+|+.+...++...++++|++|||+..++.. +.....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 887754432222 347778888999999999999999999999999888887888999999999999988 55678899
Q ss_pred cCCCChhhhHHHHHHhhcCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHhccC-CHHHHHHHHHHhccC-----C--
Q 015918 205 IKELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-RKEVWENAISKLEMV-----P-- 275 (398)
Q Consensus 205 l~~L~~~e~~~Ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~-~~~~~~~~~~~l~~~-----~-- 275 (398)
++.|+.+|||+||.+.++... ...+...++++++++.|+|+|+|++.+|..+..+ +..+|+.+.+.+... +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999986653 2223478999999999999999999999999984 466899999887554 1
Q ss_pred hhhHHHHHHHhHhcCchHHHHHHHHhhcCcCC--cChHHHHHHHHhcCc------------cccccHHHHhhccCeeecc
Q 015918 276 QMEIQEVLKISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEF------------FATSGIEVLVDKSLITISE 341 (398)
Q Consensus 276 ~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~------------~~~~~l~~L~~~~Ll~~~~ 341 (398)
...+..++..+|+.|+++.+.||+++|+||.+ ++.+.+..+|.+++. ....++++|++++|+...+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 46789999999999999999999999999999 999999999999883 2346799999999999764
Q ss_pred C----CceEecHHHHHHHHHHHh
Q 015918 342 Y----NKIRMHDLMRNMGREIVR 360 (398)
Q Consensus 342 ~----~~~~~H~lir~~~~~~~~ 360 (398)
. ..+.|||++|++|..++.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 2 469999999999999998
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-35 Score=273.18 Aligned_cols=266 Identities=27% Similarity=0.406 Sum_probs=205.8
Q ss_pred cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH--hhccCcceEEEeechhhhhcCCHHHHHHHHHHHHh
Q 015918 53 VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK--ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 130 (398)
Q Consensus 53 R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 130 (398)
|+.++++|.+.|.... ++.++|+|+|++|+||||||.+++++ ...+|+.++|+. .+...+...+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccccccccccccccccccc
Confidence 7899999999999866 78999999999999999999999988 889999999998 5555666888889998887
Q ss_pred cCCCC---CCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHhcCC-CeeEEcC
Q 015918 131 NDGNM---NKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGV-NKIYQIK 206 (398)
Q Consensus 131 ~~~~~---~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~-~~~~~l~ 206 (398)
..... +...+.....+...+.++++||||||+++...++.+...++....+++||+|||+..+...... ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76432 1222237788888899999999999999999887777666655678999999999877655443 6789999
Q ss_pred CCChhhhHHHHHHhhcCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc-CCHHHHHHHHHHhccCC------hhh
Q 015918 207 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMVP------QME 278 (398)
Q Consensus 207 ~L~~~e~~~Ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~~~------~~~ 278 (398)
+|+.+++.+||.+.++... .......+.+.++++.|+|+|++|+.+|.+++. .....|....+.+.... ..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999885443 222334567899999999999999999999954 24567777776654332 477
Q ss_pred HHHHHHHhHhcCchHHHHHHHHhhcCcCC--cChHHHHHHHHhcCcc
Q 015918 279 IQEVLKISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFF 323 (398)
Q Consensus 279 v~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~ 323 (398)
+..++..+|+.|+++.|.+|.++|+||.+ ++.+.+..+|.+++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 99999999999999999999999999987 7899999999886543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.85 E-value=1.4e-19 Score=192.00 Aligned_cols=297 Identities=12% Similarity=0.107 Sum_probs=193.5
Q ss_pred ccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhh-hcCCHHHHH
Q 015918 44 FETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE-ETGKLADLR 122 (398)
Q Consensus 44 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~ 122 (398)
|+.+..+|-|...++.+.+. ...++++|+||+|.||||++.++++... .+.|++ ++ .+.++..+.
T Consensus 10 p~~~~~~~~R~rl~~~l~~~------~~~~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~----l~~~d~~~~~f~ 75 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA------NNYRLVLVTSPAGYGKTTLISQWAAGKN----NLGWYS----LDESDNQPERFA 75 (903)
T ss_pred CCCccccCcchHHHHHHhcc------cCCCeEEEECCCCCCHHHHHHHHHHhCC----CeEEEe----cCcccCCHHHHH
Confidence 35667899998877777532 4568999999999999999999986432 588987 43 234555555
Q ss_pred HHHHHHHhcCCCC--CCC---------Ccc--chHHHHHhh-C-CceEEEEEeCCCCh--Hh-HHHHHccCCCCCCCcEE
Q 015918 123 KELLSTLLNDGNM--NKF---------PNI--GLNFQSKRL-T-RKKVLIVFDDVNHP--RQ-IEFLIGNLDWFASGSRI 184 (398)
Q Consensus 123 ~~i~~~l~~~~~~--~~~---------~~~--~~~~l~~~l-~-~~~~LlvlDd~~~~--~~-~~~l~~~l~~~~~~~~i 184 (398)
..++..+...... +.. ... ....+...+ . +.+++|||||++.. .. .+.+...+....++.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 6666555322111 000 110 122222222 2 67999999999642 22 22333333333567889
Q ss_pred EEEeCChhHHHh---cCCCeeEEcC----CCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 015918 185 LITARDKQALIN---CGVNKIYQIK----ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF 257 (398)
Q Consensus 185 liTsR~~~~~~~---~~~~~~~~l~----~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~ 257 (398)
|+|||....... ........|. +|+.+|+.+|+.... +... ..+.+..+++.|+|+|+++.+++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~-~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL-SSPI----EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc-CCCC----CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999998532211 1122334455 999999999998765 2222 235588999999999999999988775
Q ss_pred cCCHHHHHHHHHHhccCChhhHHHHH-HHhHhcCchHHHHHHHHhhcCcCCcChHHHHHHHHhcCccccccHHHHhhccC
Q 015918 258 RKRKEVWENAISKLEMVPQMEIQEVL-KISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSL 336 (398)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~v~~~l-~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~L 336 (398)
..+. ........+...+...+...+ ...+..|+++.++++..+|+++ .++.+.+..+.+. .+....++.|.+.+|
T Consensus 231 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l 306 (903)
T PRK04841 231 QNNS-SLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGL 306 (903)
T ss_pred hCCC-chhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCC
Confidence 4321 111111222222233455544 4458999999999999999985 7887777777643 345678999999999
Q ss_pred eeec-c--CCceEecHHHHHHHHHHHhhcC
Q 015918 337 ITIS-E--YNKIRMHDLMRNMGREIVRQES 363 (398)
Q Consensus 337 l~~~-~--~~~~~~H~lir~~~~~~~~~~~ 363 (398)
+... + ..+|++||++++++++.+....
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 6632 2 3489999999999999986553
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.82 E-value=8.4e-19 Score=171.82 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=203.0
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..+.+.|-|...++.|.+. ...+.++|+.|+|.|||||+.+++. ....-..+.|++. ...+.++..++..
T Consensus 16 ~~~~~~v~R~rL~~~L~~~------~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsl---de~dndp~rF~~y 85 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRRA------NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSL---DESDNDPARFLSY 85 (894)
T ss_pred CCcccccccHHHHHHHhcC------CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeec---CCccCCHHHHHHH
Confidence 4577888898877777653 4679999999999999999999998 4555667899982 2235567777777
Q ss_pred HHHHHhcCCCC--CCCCcc-----------chHHHHHhhC--CceEEEEEeCCC---Ch---HhHHHHHccCCCCCCCcE
Q 015918 125 LLSTLLNDGNM--NKFPNI-----------GLNFQSKRLT--RKKVLIVFDDVN---HP---RQIEFLIGNLDWFASGSR 183 (398)
Q Consensus 125 i~~~l~~~~~~--~~~~~~-----------~~~~l~~~l~--~~~~LlvlDd~~---~~---~~~~~l~~~l~~~~~~~~ 183 (398)
++..+..-... +..... ....+...+. .+|+.+||||++ ++ ..++.|.... +++..
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeE
Confidence 77666522111 010000 2222222222 468999999996 22 2355555554 57889
Q ss_pred EEEEeCChhHHHhcC---CCeeEEcC----CCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 184 ILITARDKQALINCG---VNKIYQIK----ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 184 iliTsR~~~~~~~~~---~~~~~~l~----~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
+++|||+.+...... ....++|. .|+.+|+.+||..+. +...+ +...+.+.+.++|++-++.+.+-.+
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-SLPLD----AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-CCCCC----hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 999999875443321 22334444 589999999998765 22222 2448899999999999999999888
Q ss_pred ccCCHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCcCCcChHHHHHHHHhcCccccccHHHHhhccC
Q 015918 257 FRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSL 336 (398)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~L 336 (398)
+.+. +-......+......-...+....++.||++.+.++..+|++ ..+..+....+.+. .+....+++|.++||
T Consensus 238 ~~~~--~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg~--~ng~amLe~L~~~gL 312 (894)
T COG2909 238 RNNT--SAEQSLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTGE--ENGQAMLEELERRGL 312 (894)
T ss_pred cCCC--cHHHHhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhcC--CcHHHHHHHHHhCCC
Confidence 8422 112222333333233345666778999999999999999999 44666666666643 344567999999998
Q ss_pred ee---eccCCceEecHHHHHHHHHHHhhcCCC
Q 015918 337 IT---ISEYNKIRMHDLMRNMGREIVRQESIN 365 (398)
Q Consensus 337 l~---~~~~~~~~~H~lir~~~~~~~~~~~~~ 365 (398)
+- .+++.||++|++|.+|.+.+.+...+.
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~ 344 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQRELAA 344 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhccccCC
Confidence 76 233668999999999999999876533
No 6
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=163.75 Aligned_cols=328 Identities=16% Similarity=0.246 Sum_probs=203.9
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechh-hhhcC---CHHHHHHH
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE-AEETG---KLADLRKE 124 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~-~~~~~---~~~~~~~~ 124 (398)
.++||+.|++.|.+.+..-+.+...++.|.|.+|+|||+++.++.+.+.+.. ..++..... ..... .+.+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 4799999999999999765547788999999999999999999999877662 233321111 11111 11223333
Q ss_pred HHHHHhcC----------------------------------CCCCCCCc---c---------chHHHHHh-hCCceEEE
Q 015918 125 LLSTLLND----------------------------------GNMNKFPN---I---------GLNFQSKR-LTRKKVLI 157 (398)
Q Consensus 125 i~~~l~~~----------------------------------~~~~~~~~---~---------~~~~l~~~-l~~~~~Ll 157 (398)
+..++... +..+...+ . ....+... .+.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 33333111 00000000 0 00111111 24569999
Q ss_pred EEeCCC--ChHhH---HHHHccCC--CC-CCCcEEEEEeCCh--hHHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCC
Q 015918 158 VFDDVN--HPRQI---EFLIGNLD--WF-ASGSRILITARDK--QALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHP 227 (398)
Q Consensus 158 vlDd~~--~~~~~---~~l~~~l~--~~-~~~~~iliTsR~~--~~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~ 227 (398)
|+||++ ++..+ +.++.... .. .+....+.+.+.. .+.........+.|.||+..+...++...+......
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999994 33333 33333322 00 1122222233322 122222355789999999999999998877331222
Q ss_pred CcchHHHHHHHHHHcCCChHHHHHHHHHhccC-------CHHHHHHHHHHhccCC-hhhHHHHHHHhHhcCchHHHHHHH
Q 015918 228 DASYIELTHEAIKYAQGVPIALKILGRFLFRK-------RKEVWENAISKLEMVP-QMEIQEVLKISYDGLDDKEKNIFL 299 (398)
Q Consensus 228 ~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~-------~~~~~~~~~~~l~~~~-~~~v~~~l~~~~~~L~~~~~~~l~ 299 (398)
..+....+++++.|||+++..+.+.+.+. ....|......+...+ .+.+...+...++.||...++++.
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 24668999999999999999999999763 2345554444443322 233555789999999999999999
Q ss_pred HhhcCcCCcChHHHHHHHHhcCc-cccccHHHHhhccCeeec-----c-CC--c-eEe-cHHHHHHHHHHHhhcCCCCCC
Q 015918 300 DIACFLVGEDRDIVTKYLNACEF-FATSGIEVLVDKSLITIS-----E-YN--K-IRM-HDLMRNMGREIVRQESINDPS 368 (398)
Q Consensus 300 ~la~~~~~~~~~~l~~~~~~~~~-~~~~~l~~L~~~~Ll~~~-----~-~~--~-~~~-H~lir~~~~~~~~~~~~~~~~ 368 (398)
.+||++..|+.+.+..++..... ......+.|....++... . +. . |++ |+.+|+.++..+.++
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 99999999999999999864332 233344444444444321 0 01 1 334 888888888776544
Q ss_pred CcccccCchhHHHHHHhCcCc
Q 015918 369 KRSRLWHHKEIYEVLTENMVS 389 (398)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~ 389 (398)
+|...|.+|+..|++..+.
T Consensus 390 --~rq~~H~~i~~lL~~~~~~ 408 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNIPE 408 (849)
T ss_pred --hHHHHHHHHHHHHHHhCCc
Confidence 3557799999999988763
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=5.6e-14 Score=135.05 Aligned_cols=285 Identities=15% Similarity=0.061 Sum_probs=167.3
Q ss_pred cccCcccccchhHHHHHHHhccCC-CCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 121 (398)
..|+.|+||++|+++|...+.... ....+.++|+|++|+|||++++.+++.+.... -..+++. +....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 466789999999999999985321 14556789999999999999999999876654 2234444 3333456677
Q ss_pred HHHHHHHHhcCCCCCCC--CccchHHHHHhhC--CceEEEEEeCCCChH------hHHHHHccCCCCCC-CcEEEEEeCC
Q 015918 122 RKELLSTLLNDGNMNKF--PNIGLNFQSKRLT--RKKVLIVFDDVNHPR------QIEFLIGNLDWFAS-GSRILITARD 190 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~--~~~~~~~l~~~l~--~~~~LlvlDd~~~~~------~~~~l~~~l~~~~~-~~~iliTsR~ 190 (398)
+..++.++......... .......+...+. +++++||||+++... .+..+......... ...+|.++..
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 77888777542211111 1113334444443 467899999997543 23333332221111 3335555554
Q ss_pred hhHHHhc-------CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHc---CC-ChHHHHHHHHHhc--
Q 015918 191 KQALINC-------GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYA---QG-VPIALKILGRFLF-- 257 (398)
Q Consensus 191 ~~~~~~~-------~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~---~g-~Pl~i~~l~~~l~-- 257 (398)
....... -....+.++|++.++..+++..++.....+.....+.++.+++.+ .| .+.++..+-.+..
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4322211 123568899999999999998876322111223345566666655 34 4555555543321
Q ss_pred --c-C---CHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCc----CCcChHHHHHH-------HHhc
Q 015918 258 --R-K---RKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTKY-------LNAC 320 (398)
Q Consensus 258 --~-~---~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~----~~~~~~~l~~~-------~~~~ 320 (398)
+ . ....+..+.+.+ -...+...+..||...+.+|..++... ..++...+... .+.+
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 1 1 233444433333 123345678999999999988776543 23454444432 1111
Q ss_pred C---ccccccHHHHhhccCeeec
Q 015918 321 E---FFATSGIEVLVDKSLITIS 340 (398)
Q Consensus 321 ~---~~~~~~l~~L~~~~Ll~~~ 340 (398)
. ......++.|...|||...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 1234579999999999854
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.60 E-value=8e-15 Score=130.31 Aligned_cols=197 Identities=20% Similarity=0.191 Sum_probs=103.4
Q ss_pred ccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH------HH
Q 015918 50 LVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL------RK 123 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~ 123 (398)
|+||+.|++.|.+++.. +..+.++|+||.|+|||+|++++.+...+.....+|+....... ......+ ..
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHH
Confidence 89999999999999976 34678999999999999999999998755443444544221111 0011111 11
Q ss_pred HHHHHHhcCCCCC----------CCCccchHHHHHhhC--CceEEEEEeCCCChH-----------hHHHHHccCCCCCC
Q 015918 124 ELLSTLLNDGNMN----------KFPNIGLNFQSKRLT--RKKVLIVFDDVNHPR-----------QIEFLIGNLDWFAS 180 (398)
Q Consensus 124 ~i~~~l~~~~~~~----------~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~-----------~~~~l~~~l~~~~~ 180 (398)
.+...+....... .........+...+. +++++|||||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 1111121111100 011112333333332 345999999996443 12222222222 33
Q ss_pred CcEEEEEeCChhHHHh--------cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 181 GSRILITARDKQALIN--------CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 181 ~~~iliTsR~~~~~~~--------~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
...+++++........ ......+.+++|+.+++.+++....... ...+..++..+.++..++|+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 4445566555544433 2344559999999999999998865333 111234677899999999999998753
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=9.3e-14 Score=128.73 Aligned_cols=260 Identities=15% Similarity=0.142 Sum_probs=157.8
Q ss_pred CcccccchhHHHHHHHhccCCC--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
..|+|++++++.|..++..... ...+.++++||+|+|||+||+.+++.+...+ .+.. .........+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---~~~~----~~~~~~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL---KITS----GPALEKPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE---EEec----cchhcCchhHH-HH
Confidence 5799999999999998863211 3456789999999999999999998875442 1111 10001111111 11
Q ss_pred HHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCC-------------------CCCCCcEE
Q 015918 126 LSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLD-------------------WFASGSRI 184 (398)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~-------------------~~~~~~~i 184 (398)
+.. + +...+|+||+++.. ...+.+...+. ...+.+.|
T Consensus 76 l~~---------------------~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 76 LTN---------------------L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred HHh---------------------c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 111 1 23447888888632 12222221110 00123334
Q ss_pred EEEeCChhHHHhc--CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHH
Q 015918 185 LITARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKE 262 (398)
Q Consensus 185 liTsR~~~~~~~~--~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~ 262 (398)
..|++...+.... .....+.+++++.++..+++.+.+... ......+.+..+++.|+|.|..+..++..+...
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~--~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~--- 208 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL--NVEIEPEAALEIARRSRGTPRIANRLLRRVRDF--- 208 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh--CCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHH---
Confidence 4455543222211 234567899999999999998877422 223445778999999999998887666644210
Q ss_pred HHHHHHHHhccCChhhHHHH---HHHhHhcCchHHHHHHH-HhhcCcCC-cChHHHHHHHHhcCccccccHH-HHhhccC
Q 015918 263 VWENAISKLEMVPQMEIQEV---LKISYDGLDDKEKNIFL-DIACFLVG-EDRDIVTKYLNACEFFATSGIE-VLVDKSL 336 (398)
Q Consensus 263 ~~~~~~~~l~~~~~~~v~~~---l~~~~~~L~~~~~~~l~-~la~~~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~~L 336 (398)
.. ...-.......+... +...+..+++..+.+|. .++.+..+ ++.+.+...++.+....+..++ .|++++|
T Consensus 209 --a~-~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~l 285 (305)
T TIGR00635 209 --AQ-VRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGF 285 (305)
T ss_pred --HH-HcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCC
Confidence 00 000001111111111 34456778888888777 44555444 8899999999988888888899 6999999
Q ss_pred eeeccCCce
Q 015918 337 ITISEYNKI 345 (398)
Q Consensus 337 l~~~~~~~~ 345 (398)
+...+.|++
T Consensus 286 i~~~~~g~~ 294 (305)
T TIGR00635 286 LQRTPRGRI 294 (305)
T ss_pred cccCCchhh
Confidence 987766654
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=2.7e-12 Score=122.09 Aligned_cols=285 Identities=18% Similarity=0.116 Sum_probs=160.9
Q ss_pred cccCcccccchhHHHHHHHhccCC-CCCceEEEEEcCCCccHHHHHHHHHHHhhccCc------ceEEEeechhhhhcCC
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETGK 117 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 117 (398)
..|+.|+||+.|++.|..++.... ....+.+.|+||+|+|||++++.+++.+..... ..+|+. +....+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCC
Confidence 345589999999999999986421 144567999999999999999999988654322 244544 333345
Q ss_pred HHHHHHHHHHHHhcCC-CCCCC--C-ccchHHHHHhh--CCceEEEEEeCCCChH-----hHHHHHccC--CCC-CCCcE
Q 015918 118 LADLRKELLSTLLNDG-NMNKF--P-NIGLNFQSKRL--TRKKVLIVFDDVNHPR-----QIEFLIGNL--DWF-ASGSR 183 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~-~~~~~--~-~~~~~~l~~~l--~~~~~LlvlDd~~~~~-----~~~~l~~~l--~~~-~~~~~ 183 (398)
...++..++.++...+ ..+.. . ......+...+ .+++++||||+++... .+..+.... ... .....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 5677777777774211 11011 1 11223333333 3568899999997651 122222221 111 13344
Q ss_pred EEEEeCChhHHHhc-----C--CCeeEEcCCCChhhhHHHHHHhhcC---CCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 184 ILITARDKQALINC-----G--VNKIYQIKELVHVDALKLLNQCAFG---RDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 184 iliTsR~~~~~~~~-----~--~~~~~~l~~L~~~e~~~Ll~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+|+++........+ . ....+.++|++.++..+++..++.. .....+..-+....++..+.|.|..+..++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555444322111 1 1256889999999999999987631 111222222344456666779997665444
Q ss_pred HHhcc------C---CHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCc----CCcChHHHHH-H---
Q 015918 254 RFLFR------K---RKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTK-Y--- 316 (398)
Q Consensus 254 ~~l~~------~---~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~----~~~~~~~l~~-~--- 316 (398)
..... . +......+.+.+ -.......+..|+...+.++..++.+. ..+....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 33211 1 123333333332 123345677889998888777665321 1244443333 1
Q ss_pred HHhcC------ccccccHHHHhhccCeeec
Q 015918 317 LNACE------FFATSGIEVLVDKSLITIS 340 (398)
Q Consensus 317 ~~~~~------~~~~~~l~~L~~~~Ll~~~ 340 (398)
+...+ .....+++.|...||++..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111 1234579999999999965
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=3.2e-13 Score=126.14 Aligned_cols=262 Identities=14% Similarity=0.126 Sum_probs=161.8
Q ss_pred cccCcccccchhHHHHHHHhccC--CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG--LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-.+|+||+.+++.+..++... .....+.++|+||+|+|||+||+.+++.+...+ .+.. ...... ...+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~---~~~~----~~~~~~-~~~l 93 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI---RITS----GPALEK-PGDL 93 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe---EEEe----cccccC-hHHH
Confidence 45577999999999998888632 114467889999999999999999999875442 1221 000000 1111
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--hHHHHHccCC-------------------CCCCC
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--QIEFLIGNLD-------------------WFASG 181 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~-------------------~~~~~ 181 (398)
..++. .+ ....+|+||+++... ..+.+...+. ...+.
T Consensus 94 ~~~l~---------------------~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 94 AAILT---------------------NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHHH---------------------hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 11111 11 234588889886422 1111111100 00123
Q ss_pred cEEEEEeCChhHHHhc--CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 015918 182 SRILITARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK 259 (398)
Q Consensus 182 ~~iliTsR~~~~~~~~--~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~ 259 (398)
+.|..|++.......+ .....+.+++++.++..+++.+.+.... ....++.+..+++.|+|.|..+..+...+..
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~- 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD- 228 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH-
Confidence 3344555543322211 2345789999999999999998764322 2344577999999999999877777665422
Q ss_pred CHHHHHHHHHHhccCChhhHH---HHHHHhHhcCchHHHHHHH-HhhcCcCC-cChHHHHHHHHhcCccccccHH-HHhh
Q 015918 260 RKEVWENAISKLEMVPQMEIQ---EVLKISYDGLDDKEKNIFL-DIACFLVG-EDRDIVTKYLNACEFFATSGIE-VLVD 333 (398)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~v~---~~l~~~~~~L~~~~~~~l~-~la~~~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~ 333 (398)
|.... .-.......+. ..+...+..|++..+..+. .+..|..+ +..+.+...++.+....+..++ .|++
T Consensus 229 ----~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 229 ----FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ----HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 11000 00111112222 2334556778888888886 66666554 9999999999888888888888 9999
Q ss_pred ccCeeeccCCc
Q 015918 334 KSLITISEYNK 344 (398)
Q Consensus 334 ~~Ll~~~~~~~ 344 (398)
.+|++....|+
T Consensus 304 ~~li~~~~~gr 314 (328)
T PRK00080 304 QGFIQRTPRGR 314 (328)
T ss_pred cCCcccCCchH
Confidence 99998776664
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.46 E-value=6.7e-12 Score=114.17 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=109.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH--
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS-- 147 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-- 147 (398)
.+.+.++|+|++|+|||||++.+++.+...-....++. ....+..+++..++..++..... .........+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHH
Confidence 34568999999999999999999988763311222222 12345566777777666543221 11111122222
Q ss_pred --H-hhCCceEEEEEeCCCChH--hHHHHHccCC---CCCCCcEEEEEeCChhHHHhc----------CCCeeEEcCCCC
Q 015918 148 --K-RLTRKKVLIVFDDVNHPR--QIEFLIGNLD---WFASGSRILITARDKQALINC----------GVNKIYQIKELV 209 (398)
Q Consensus 148 --~-~l~~~~~LlvlDd~~~~~--~~~~l~~~l~---~~~~~~~iliTsR~~~~~~~~----------~~~~~~~l~~L~ 209 (398)
. ...+++.+||+||++... .++.+..... .......+++|.... ..... .....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 235778999999997543 3443322111 112233455555433 11111 124567899999
Q ss_pred hhhhHHHHHHhhcCCC--CCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 210 HVDALKLLNQCAFGRD--HPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 210 ~~e~~~Ll~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.+|..+++...+.... .......+..+.+++.|+|+|..|+.++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999987663222 1223556889999999999999999999876
No 13
>PF05729 NACHT: NACHT domain
Probab=99.33 E-value=2.2e-11 Score=102.09 Aligned_cols=142 Identities=17% Similarity=0.227 Sum_probs=86.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ 146 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 146 (398)
++++|+|++|+||||+++.++..+.... ...+|+. .+..........+...+......... . ....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~--~----~~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIA--P----IEELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchh--h----hHHHH
Confidence 5789999999999999999999866554 2333433 33333222222333333333322111 0 11111
Q ss_pred H-HhhCCceEEEEEeCCCChHh---------HHHHHc-cCCC-CCCCcEEEEEeCChhH---HHhcCCCeeEEcCCCChh
Q 015918 147 S-KRLTRKKVLIVFDDVNHPRQ---------IEFLIG-NLDW-FASGSRILITARDKQA---LINCGVNKIYQIKELVHV 211 (398)
Q Consensus 147 ~-~~l~~~~~LlvlDd~~~~~~---------~~~l~~-~l~~-~~~~~~iliTsR~~~~---~~~~~~~~~~~l~~L~~~ 211 (398)
. .....++++||||++++... +..++. .+.. ..+++++++|+|.... .........+.|.+|+.+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 1 22356899999999974322 222222 2222 3568999999998755 333344567999999999
Q ss_pred hhHHHHHHhh
Q 015918 212 DALKLLNQCA 221 (398)
Q Consensus 212 e~~~Ll~~~~ 221 (398)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.30 E-value=1.2e-10 Score=106.15 Aligned_cols=171 Identities=18% Similarity=0.293 Sum_probs=106.1
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
.-.++++|-...+.++.+ + +.....++|||||+||||||+.++......|...--+. +....+..+++.
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-----~gvkdlr~i~e~ 95 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-----SGVKDLREIIEE 95 (436)
T ss_pred cChHhhhCCCchHHHHHh---c---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-----ccHHHHHHHHHH
Confidence 344556665555555443 3 56778889999999999999999988766653211111 111122222211
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCChhH-----HHhc
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQA-----LINC 197 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~~-----~~~~ 197 (398)
.-.....+++++|++|+++ +-.+-+.|++.+- .+.-++|-+..+++ ....
T Consensus 96 --------------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 96 --------------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred --------------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHh
Confidence 1122334789999999997 5556677776653 45555553333221 1123
Q ss_pred CCCeeEEcCCCChhhhHHHHHHhhcCCC-----CCCcchHHHHHHHHHHcCCChHHH
Q 015918 198 GVNKIYQIKELVHVDALKLLNQCAFGRD-----HPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 198 ~~~~~~~l~~L~~~e~~~Ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
+.+..+.+++|+.++..+++.+.+.... ......++..+.++..++|-....
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 4678899999999999999988331111 111234678899999999976643
No 15
>PF14516 AAA_35: AAA-like domain
Probab=99.26 E-value=4e-09 Score=98.33 Aligned_cols=285 Identities=10% Similarity=0.112 Sum_probs=157.7
Q ss_pred ccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhh-hcCCHHHHH
Q 015918 44 FETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE-ETGKLADLR 122 (398)
Q Consensus 44 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~ 122 (398)
+.+.+.+|+|...-+.+.+.+.. ....+.|.||..+|||+|...+.+.+.+.--..+++....-.+ ...+...++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 36777889999677777777653 2468999999999999999999999866544455655322111 123455555
Q ss_pred HHHHHHHhcCCCCCC-CC----------ccchHHHHHh-h--CCceEEEEEeCCCCh----HhHHHHHccCCC-------
Q 015918 123 KELLSTLLNDGNMNK-FP----------NIGLNFQSKR-L--TRKKVLIVFDDVNHP----RQIEFLIGNLDW------- 177 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~-~~----------~~~~~~l~~~-l--~~~~~LlvlDd~~~~----~~~~~l~~~l~~------- 177 (398)
..++..+......+. .. ......+... + .+++++|+||+++.. .....|+..+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 555544433321111 00 0122222222 2 368999999999632 112233322210
Q ss_pred C--CCCcEEEEEeCChhHHH-h-----cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 178 F--ASGSRILITARDKQALI-N-----CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 178 ~--~~~~~iliTsR~~~~~~-~-----~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
. -...++++....+.... . .+....+.|++|+.+|+.+|+..+.. ... ....+.+...++|+|+.+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~~----~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EFS----QEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cCC----HHHHHHHHHHHCCCHHHH
Confidence 0 11223333332221111 1 13446789999999999999987642 111 233999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhccCChhhHHHHHHHhHhcC--chHHHHHHHHhhcCcCCcChHHHHHHHHhcCcccccc
Q 015918 250 KILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGL--DDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSG 327 (398)
Q Consensus 250 ~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L--~~~~~~~l~~la~~~~~~~~~~l~~~~~~~~~~~~~~ 327 (398)
..++..+..... ............ ......-++..+..| .++.+.++..+-.-+..++. ....
T Consensus 237 ~~~~~~l~~~~~-~~~~l~~~a~~~-~~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~~~-------------~~~~ 301 (331)
T PF14516_consen 237 QKACYLLVEEQI-TLEQLLEEAITD-NGIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPVDL-------------DSDD 301 (331)
T ss_pred HHHHHHHHHccC-cHHHHHHHHHHh-cccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCccc-------------ChHH
Confidence 999999976421 122222221111 111122333334444 34445444433222111111 1234
Q ss_pred HHHHhhccCeeeccCCceEe-cHHHHHH
Q 015918 328 IEVLVDKSLITISEYNKIRM-HDLMRNM 354 (398)
Q Consensus 328 l~~L~~~~Ll~~~~~~~~~~-H~lir~~ 354 (398)
...|...|||... +|.+.. .++-|+|
T Consensus 302 ~~~L~~~GLV~~~-~~~~~~~n~iY~~y 328 (331)
T PF14516_consen 302 IYKLESLGLVKRD-GNQLEVRNPIYRQY 328 (331)
T ss_pred HHHHHHCCeEEEe-CCEEEEEcHHHHHH
Confidence 6789999999998 554444 6666665
No 16
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.6e-09 Score=106.21 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=116.0
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-.++||.+..++.|.+++..+ .-...++++|+.|+||||+++.+++.+...... .... +..+.....+...
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-~~~P----CG~C~sCr~I~~G 85 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-TSQP----CGVCRACREIDEG 85 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-CCCC----CcccHHHHHHhcC
Confidence 34567999999999999999763 235567899999999999999999886422100 0000 0000000000000
Q ss_pred HHHHHhcCCCCCCC-CccchHHHHH----hhCCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCChh-HH-H
Q 015918 125 LLSTLLNDGNMNKF-PNIGLNFQSK----RLTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDKQ-AL-I 195 (398)
Q Consensus 125 i~~~l~~~~~~~~~-~~~~~~~l~~----~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~-~~-~ 195 (398)
-..++......... .+...+.+.. -..++.-++|||+++... .+..|+..+.......++|++|.+.. +. .
T Consensus 86 ~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T 165 (830)
T PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165 (830)
T ss_pred CCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch
Confidence 00000000000000 0001111111 012345689999998543 46666666554456777777776652 22 2
Q ss_pred hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHHh
Q 015918 196 NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGRFL 256 (398)
Q Consensus 196 ~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~l~~~l 256 (398)
..+.+..+.+.+++.++..+.+.+.+.... .....+.+..|++.++|... ++.++-+.+
T Consensus 166 IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred hhhheEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 235678899999999999999988763222 22345778899999998775 554444433
No 17
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.21 E-value=2.9e-09 Score=100.14 Aligned_cols=201 Identities=13% Similarity=0.023 Sum_probs=111.3
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-c-ceEEEeechhhhhcCCHHHHHH-
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-E-GSYFAHNVREAEETGKLADLRK- 123 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~- 123 (398)
-..|+|++..++.+.+++.. +..+.++++||+|+||||+|+.+++.+.... . ..++++... .... ....+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~ 88 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD-FFDQ-GKKYLVED 88 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh-hhhc-chhhhhcC
Confidence 36789999999999999875 3445688999999999999999998865432 1 123333110 0000 0000000
Q ss_pred -HHHHHHhcC-CCCCCCCccchHHHHHhh-----CCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCChh-H
Q 015918 124 -ELLSTLLND-GNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDKQ-A 193 (398)
Q Consensus 124 -~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~-~ 193 (398)
......... .......+.....+.... ...+-+|||||++... ....+...+......+++|+|+..+. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 000000000111111111 1234589999997442 23333333332344566777765432 1
Q ss_pred H-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 194 L-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 194 ~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
. ...+....+.+.+++.++..+++...+...... ...+.+..+++.++|++..+.....
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 222355778999999999999998866332222 3457799999999999877654443
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.19 E-value=2.5e-09 Score=103.00 Aligned_cols=180 Identities=17% Similarity=0.246 Sum_probs=109.3
Q ss_pred ccCcccccchhHHH---HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 46 TENKLVGVDSRIEE---ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 46 ~~~~fvGR~~el~~---l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
.-.+|+|++..+.. |..++.. .....++|+||+|+||||||+.+++.....|. .+. .. .... +.+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~----a~-~~~~-~~i 77 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS----AV-TSGV-KDL 77 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe----cc-cccH-HHH
Confidence 34568999888766 7777765 44567889999999999999999988654431 121 00 0111 111
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEE-E-eCChh--H-HH
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILI-T-ARDKQ--A-LI 195 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~ili-T-sR~~~--~-~~ 195 (398)
..++..... ....+++.+|+||+++.. ...+.+...+. .+..+++ + |.++. + ..
T Consensus 78 r~ii~~~~~----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 78 REVIEEARQ----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHH----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 112111110 111356789999999743 34455555443 2333444 2 33321 1 12
Q ss_pred hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCC-CcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 196 NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP-DASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 196 ~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
..+....+.+.+++.++...++.+.+...... ....++....+++.++|++..+..+...+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 22455789999999999999998765321111 13446778899999999998776555443
No 19
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=7.6e-09 Score=96.55 Aligned_cols=230 Identities=12% Similarity=0.078 Sum_probs=127.5
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL 126 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (398)
-.+++|++..++.+..++.. +..+.++|+|++|+||||+++.+++.+........++... .+..... +......
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~--~~~~~~~-~~~~~~i 89 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN--ASDERGI-DVIRNKI 89 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec--cccccch-HHHHHHH
Confidence 35689999999999999975 3345679999999999999999998864332112222210 1111111 1111121
Q ss_pred HHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChh-H-HHhcCCCee
Q 015918 127 STLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-A-LINCGVNKI 202 (398)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~-~~~~~~~~~ 202 (398)
..+..... .....+-+|+||+++.. .....+...+......+.+|+++.... . ....+....
T Consensus 90 ~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 90 KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 22211110 00123558999999743 233444444443345566777664321 1 112234557
Q ss_pred EEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc-CCHHHHHHHHHHhccCChhhHHH
Q 015918 203 YQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMVPQMEIQE 281 (398)
Q Consensus 203 ~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~~~~~~v~~ 281 (398)
+++++++.++....+...+..... ...++.+..+++.++|++.-+......+.. .....-..............++.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~ 233 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIRE 233 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHH
Confidence 899999999999999887633222 234577999999999998875544433321 11111111122223334455666
Q ss_pred HHHHhHhcCchHHHHHH
Q 015918 282 VLKISYDGLDDKEKNIF 298 (398)
Q Consensus 282 ~l~~~~~~L~~~~~~~l 298 (398)
+++.....-....+..+
T Consensus 234 l~~~~~~~~~~~a~~~l 250 (319)
T PRK00440 234 MIELALNGDFTEAREKL 250 (319)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 65555444333444443
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.2e-08 Score=96.60 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=112.7
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-.+++|.+..++.+.+.+..+ .-++.++++||+|+||||+|+.+++.+........- . .........+....
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~-p----c~~c~~c~~~~~~~ 86 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN-P----CRKCIICKEIEKGL 86 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC-C----CCCCHHHHHHhcCC
Confidence 4467999999999999988753 234567899999999999999999886422100000 0 00000000000000
Q ss_pred HHHHhcCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCChh-HHH-h
Q 015918 126 LSTLLNDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDKQ-ALI-N 196 (398)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~~-~~~-~ 196 (398)
..++..........-..+..+...+ .++.-++|||+++... ....++..+...+....+|++|.+.. +.. .
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 0000000000000000111111111 2345699999998544 45566666655456666776665442 222 2
Q ss_pred cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 197 CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 197 ~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
.+.+..+++.+++.++..+.+...+...+ ....++.+..+++.++|.|..+..+.
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 24567899999999999999887663322 12334668889999999997655444
No 21
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=9.4e-09 Score=104.18 Aligned_cols=187 Identities=17% Similarity=0.099 Sum_probs=115.3
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc-c--eEEEeechh-----------
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-G--SYFAHNVRE----------- 111 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~-~--~~~~~~~~~----------- 111 (398)
.-.++||.+..++.|.+++..+. -...++++|++|+||||+|+.+++.+..... . .+..|..+.
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~r--l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQR--LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC--CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 44679999999999999987632 2345589999999999999999998643210 0 001110000
Q ss_pred ---hhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEE
Q 015918 112 ---AEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILI 186 (398)
Q Consensus 112 ---~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~ili 186 (398)
........ .++.+...+. ..-..++.-++|||+++. ......|+..+-.....+++|+
T Consensus 92 EidAas~~kVD-dIReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVD-DTRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHH-HHHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00000000 0111111110 001135667999999974 4456666666655455666666
Q ss_pred EeCCh-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 187 TARDK-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 187 TsR~~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+|.+. .+. ...+.+..+.+.+++.++..+.+...+... ......+.+..|++.++|.|.-+..++
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E--gI~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE--QLPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55443 333 223466889999999999999998766322 223445778999999999998666554
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.3e-08 Score=100.07 Aligned_cols=183 Identities=20% Similarity=0.132 Sum_probs=115.0
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc---------------------ce
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE---------------------GS 103 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~---------------------~~ 103 (398)
..-.+++|.+...+.|.+++..+. -...++++||+|+||||+|+.+++.+..... .+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr--l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR--LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 344679999999999999997642 3467799999999999999999988532210 11
Q ss_pred EEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCC
Q 015918 104 YFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASG 181 (398)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~ 181 (398)
+.+. .+......++ +.+..... ..-..++.-++|||+++.. .....+...+......
T Consensus 90 iEID----AAs~~~VddI-Reli~~~~----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEID----AASRTKVEDT-RELLDNVP----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEec----ccccCCHHHH-HHHHHHHh----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111 0000011110 01111000 0011345669999999854 4566666666554566
Q ss_pred cEEEEEeCChh-HH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 182 SRILITARDKQ-AL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 182 ~~iliTsR~~~-~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
..+|++|.+.. +. ...+.+..+++.+++.++..+.+...+...+ .....+.+..+++.++|.+..+..+
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67777776542 21 2235678899999999999999988763322 2234577889999999988766544
No 23
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9e-09 Score=96.51 Aligned_cols=285 Identities=16% Similarity=0.113 Sum_probs=161.9
Q ss_pred cccCcccccchhHHHHHHHhccCCC-CCceEEEEEcCCCccHHHHHHHHHHHhhccCcc--eEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT-MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~-~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 121 (398)
..|..+.+|+.+++++...|...-. ..+.-+.|+|++|+|||+.++.+++.+.+.... .++++ +....++.++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHH
Confidence 3444599999999999998863322 334449999999999999999999998776433 47777 5556677888
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhh--CCceEEEEEeCCCChHhH--HHHHccCCCCCC-CcE--EEEEeCChhHH
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRL--TRKKVLIVFDDVNHPRQI--EFLIGNLDWFAS-GSR--ILITARDKQAL 194 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~--~~l~~~l~~~~~-~~~--iliTsR~~~~~ 194 (398)
+..++..+......-.........+...+ .++.++||||+++....- +.+...+..... .++ ++..+-+....
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~ 169 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFL 169 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHH
Confidence 88888877622111011111333344444 357899999999743322 222222222122 232 34444443322
Q ss_pred HhcC-------CCeeEEcCCCChhhhHHHHHHhhcC---CCCCCcchHHHHHHHHHHcCCChH-HHHHHHHHhc--c--C
Q 015918 195 INCG-------VNKIYQIKELVHVDALKLLNQCAFG---RDHPDASYIELTHEAIKYAQGVPI-ALKILGRFLF--R--K 259 (398)
Q Consensus 195 ~~~~-------~~~~~~l~~L~~~e~~~Ll~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~l~~~l~--~--~ 259 (398)
..+. ....+..+|-+.+|..+++..++.. ........-++...++...+|-.. ||..+-.+.. + .
T Consensus 170 ~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 170 DYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred HHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 2221 2344789999999999999988732 223333333444444555555443 3333322221 1 0
Q ss_pred ----CHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCcCCcChHHHHHHH----HhcCc---cccccH
Q 015918 260 ----RKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYL----NACEF---FATSGI 328 (398)
Q Consensus 260 ----~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~----~~~~~---~~~~~l 328 (398)
+.+....+... --.......+..|+.+.+-++..++....+++.+.+.... ..... .....+
T Consensus 250 ~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii 322 (366)
T COG1474 250 SRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDII 322 (366)
T ss_pred CCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHH
Confidence 01111111111 1122334457889999888877666664445444443333 22233 334578
Q ss_pred HHHhhccCeeec
Q 015918 329 EVLVDKSLITIS 340 (398)
Q Consensus 329 ~~L~~~~Ll~~~ 340 (398)
+.|.-.|++...
T Consensus 323 ~~L~~lgiv~~~ 334 (366)
T COG1474 323 SELEGLGIVSAS 334 (366)
T ss_pred HHHHhcCeEEee
Confidence 889999998854
No 24
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.14 E-value=4.6e-10 Score=95.84 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=103.3
Q ss_pred cccCcccccchhHHHHHHHhccC--CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG--LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-.+|||.+..+..+.-++... .......+.+|||||+||||||.-+++.....|. +.+ ........++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s----g~~i~k~~dl- 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS----GPAIEKAGDL- 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE----CCC--SCHHH-
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc----chhhhhHHHH-
Confidence 35578999999999987766532 1145678999999999999999999999776642 222 0000001111
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCC-------------------CCC
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWF-------------------ASG 181 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~-------------------~~~ 181 (398)
.. +...++ ++.+|++|+++.. .+-+.|.+.+-.. .+-
T Consensus 93 ---~~------------------il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 93 ---AA------------------ILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---HH------------------HHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred ---HH------------------HHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 11 111122 3458899999743 3333343322110 112
Q ss_pred cEEEEEeCChhHHHhcC--CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 015918 182 SRILITARDKQALINCG--VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR 258 (398)
Q Consensus 182 ~~iliTsR~~~~~~~~~--~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~ 258 (398)
..|=.|||...+..-+. ..-..+++..+.+|..+++.+.+.. ...+..++.+.+|++++.|-|.-..-+.+.+++
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 23345777654443332 3445689999999999999876532 334456788999999999999988777777665
No 25
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.4e-08 Score=97.64 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=113.7
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc--CcceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR--FEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-.+++|.+...+.|..++.... -...++++||+|+||||+|+.+++.+... .....+.+..+.......-.++.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~- 88 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL- 88 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-
Confidence 34568999999999999987632 34566999999999999999999886421 22222222111000000000000
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-hHHH
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QALI 195 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~ 195 (398)
.+.... ...-..+..+... ..+++-++|||+++.. ..+..++..+........+|+++... .+..
T Consensus 89 ----el~~~~---~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 89 ----EIDAAS---NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ----Eecccc---cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 000000 0000011111111 1235568999999744 44666666665444555555555433 3222
Q ss_pred -hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 196 -NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 196 -~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
..+.+..+.+.+++.++..+.+...+...+.. ...+.+..+++.++|++.-+....
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~aln~L 218 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAESLL 218 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22456789999999999999998876432222 235778999999999997665433
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.10 E-value=3.7e-09 Score=93.54 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=106.6
Q ss_pred Ccccc--cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 48 NKLVG--VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 48 ~~fvG--R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
+.|++ ....++.+.+++.. ...+.+.|+|++|+|||+||+.+++.........+|+. .+.-. .....+
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~----~~~~~---~~~~~~ 84 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP----LAELA---QADPEV 84 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe----HHHHH---HhHHHH
Confidence 35553 44477777777643 45678999999999999999999988765544455655 21100 000111
Q ss_pred HHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH---h-HHHHHccCCC-CCCCcEEEEEeCChhH-------
Q 015918 126 LSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR---Q-IEFLIGNLDW-FASGSRILITARDKQA------- 193 (398)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~-~~~l~~~l~~-~~~~~~iliTsR~~~~------- 193 (398)
+ ..+.+ .-+|+|||++... . ...+...+.. ...+..+|+|++....
T Consensus 85 ~---------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 85 L---------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H---------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1 11122 2389999996432 1 2233322211 1223468888875421
Q ss_pred --HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 194 --LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 194 --~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.........+.+++++.++...++...+.... ....++....+.+.+.|||..+..+...+
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11112246789999999999999987552222 22345778889999999999887776554
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.3e-08 Score=98.22 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=114.3
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcce-EEEeechhhhhcCCHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGS-YFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~ 123 (398)
..-.++||.+..++.|.+++..+. -...++++|+.|+||||+|+.+++.+...-+.. .-.. ...+.. -..+.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR--LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~-C~sC~ 85 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR--LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQ-CRACT 85 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcc-cHHHH
Confidence 344679999999999999997642 345678999999999999999999864311000 0000 000000 00000
Q ss_pred HHHHHHhcC-CCCCCCCccchHHHH---Hh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-
Q 015918 124 ELLSTLLND-GNMNKFPNIGLNFQS---KR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK- 191 (398)
Q Consensus 124 ~i~~~l~~~-~~~~~~~~~~~~~l~---~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~- 191 (398)
.+...-... ...+...+..++.++ .. ..++.-++|||+++.. .....|+..+..-...+.+|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 000000000 000000001111111 11 1345569999999843 45677777766555566666555543
Q ss_pred hHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 192 QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 192 ~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
.+... .+.+..+.+.+++.++..+.+.+.+.... .....+.+..|++.++|.|.-...+.
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--i~~d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--IAHEVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 24567899999999999999887663222 12334667889999999997554443
No 28
>PRK06893 DNA replication initiation factor; Validated
Probab=99.10 E-value=4.3e-09 Score=92.99 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
..+.+.|+|++|+|||+|+..+++....+...+.|+. .... ...... +...+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~---------------------~~~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA---------------------VLENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH---------------------HHhhc
Confidence 3467899999999999999999999776666677776 2110 000001 11111
Q ss_pred CCceEEEEEeCCCCh---HhHH-HHHccCCCC-CCCcEE-EEEeCCh---------hHHHhcCCCeeEEcCCCChhhhHH
Q 015918 151 TRKKVLIVFDDVNHP---RQIE-FLIGNLDWF-ASGSRI-LITARDK---------QALINCGVNKIYQIKELVHVDALK 215 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~---~~~~-~l~~~l~~~-~~~~~i-liTsR~~---------~~~~~~~~~~~~~l~~L~~~e~~~ 215 (398)
. +.-+|+|||++.. ..++ .+...+... ..+..+ |+|+... .....+.....+++++++.++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1 2248999999742 2222 232222211 234445 4555442 233333455688999999999999
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 216 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 216 Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
++.+.+..... ...++..+.+++++.|....+..+...+
T Consensus 169 iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 169 VLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99988754332 3346889999999999888776665544
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.10 E-value=1.1e-08 Score=102.43 Aligned_cols=245 Identities=14% Similarity=0.119 Sum_probs=128.7
Q ss_pred cccCcccccchhHHHHHHHhccCCC--CCceEEEEEcCCCccHHHHHHHHHHHhhcc-----Cc--ceEEEeechhhhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FE--GSYFAHNVREAEET 115 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 115 (398)
..|+.+.||++|+++|...|...-. ....++.|+|++|+|||++++.+++.+... .+ ..+++. +...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCcc
Confidence 4567899999999999998864211 233567899999999999999999886432 11 234555 3333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcc-chHHHHHhh---CCceEEEEEeCCCChH--hHHHHHccCCC-CCCCcEEE--E
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRL---TRKKVLIVFDDVNHPR--QIEFLIGNLDW-FASGSRIL--I 186 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l---~~~~~LlvlDd~~~~~--~~~~l~~~l~~-~~~~~~il--i 186 (398)
.....+...+..++............ ....+...+ .....+||||+++... .-+.|...+.+ ...+++|+ .
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 45566666666666433221111111 222222222 1234699999997432 11222211111 11233333 3
Q ss_pred EeCChhHH----HhcC---CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHH---HcCCChH-HHHHHHHH
Q 015918 187 TARDKQAL----INCG---VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIK---YAQGVPI-ALKILGRF 255 (398)
Q Consensus 187 TsR~~~~~----~~~~---~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~---~~~g~Pl-~i~~l~~~ 255 (398)
++...... +... ....+..+|++.++..+++..++... .....+++.+.+++ ...|... ||.++-.+
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 33322111 1111 12346779999999999999887432 11223455555554 4445444 44333333
Q ss_pred hcc--CC---HHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhh
Q 015918 256 LFR--KR---KEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIA 302 (398)
Q Consensus 256 l~~--~~---~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la 302 (398)
... .. .+....+...+ ....+...+..||...+-+|..+.
T Consensus 986 gEikegskVT~eHVrkAleei-------E~srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQL-------FDSPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHH-------HhhhHHHHHHcCCHHHHHHHHHHH
Confidence 321 11 12222222221 112234456788888887776444
No 30
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=5.6e-08 Score=94.01 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=114.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc---------------------Ccce
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGS 103 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~---------------------f~~~ 103 (398)
..-.++||.+...+.|.+.+..+. -.+.++++||+|+||||+|+.+++.+.-. +..+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r--i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK--IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 344679999999999998887632 34579999999999999999999864211 1122
Q ss_pred EEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCC
Q 015918 104 YFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASG 181 (398)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~ 181 (398)
+.+. .+......++ ..+....... -..++.-++|||+++.. .....|+..+....+.
T Consensus 88 ~eid----aas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEID----AASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEe----cccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 2222 1111111111 1111111000 01245568999999743 4466666666555566
Q ss_pred cEEEEEeCCh-hHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 182 SRILITARDK-QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 182 ~~iliTsR~~-~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
..+|++|.+. .+.. ..+.+..+.+.+++.++..+.+...+...+. ...++.+..+++.++|.+..+....
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~alslL 218 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNALFLL 218 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6666665433 3322 2346788999999999999999887633222 2345778899999999987554443
No 31
>PLN03025 replication factor C subunit; Provisional
Probab=99.08 E-value=1.7e-08 Score=93.94 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=110.3
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEeechhhhhcCCHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
..-.+++|.+..++.|..++.. +..+.+.++||+|+||||+|..+++.+... +... ++. +. .+..... +.+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~e-ln-~sd~~~~-~~vr 82 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD---GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEA-VLE-LN-ASDDRGI-DVVR 82 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccc-eee-ec-ccccccH-HHHH
Confidence 3445789999999999888775 344568899999999999999999986432 2211 111 00 1111111 1222
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCCh-hHHH-hcCC
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDK-QALI-NCGV 199 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~-~~~~-~~~~ 199 (398)
+....+...... ...++.-++|||+++... ....+...+......+++++++... .+.+ ..+.
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222222111000 002346699999997532 2333333332223455666655432 2221 2234
Q ss_pred CeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 200 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 200 ~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
+..+++++++.++..+.+...+...+. ...++....+++.++|....+.....
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567899999999999999887633222 22356789999999998876654444
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.07 E-value=7.2e-09 Score=90.71 Aligned_cols=191 Identities=15% Similarity=0.160 Sum_probs=108.8
Q ss_pred cccccCcccccchhHH--HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCH
Q 015918 43 TFETENKLVGVDSRIE--EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKL 118 (398)
Q Consensus 43 ~~~~~~~fvGR~~el~--~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~ 118 (398)
.++-+..++|-..++. ...+...... .....+.|+|++|+|||.|+..+++.+.+..+ .++|++ .
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~~~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~ 72 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAENPG-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------A 72 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHSTT-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------H
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhcCC-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------H
Confidence 3345556678655533 2333333332 45567899999999999999999998765432 355554 1
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH---hH-HHHHccCCC-CCCCcEEEEEeCChh-
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR---QI-EFLIGNLDW-FASGSRILITARDKQ- 192 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~-~~l~~~l~~-~~~~~~iliTsR~~~- 192 (398)
.++...+...+... ....+...+..-. +|+|||++... .+ +.+...+.. ...+.++|+|+...+
T Consensus 73 ~~f~~~~~~~~~~~---------~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 73 EEFIREFADALRDG---------EIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHHHHHTT---------SHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred HHHHHHHHHHHHcc---------cchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 23333333333221 2233444444333 88999996432 12 223322221 134667999985442
Q ss_pred --------HHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 193 --------ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 193 --------~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
....+..+..++|.+.+.++-.+++.+.+...... ..+++++.+++.+.++...+..+...+
T Consensus 143 ~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 143 ELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp TTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred cccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 12223467889999999999999999887443333 446888999999988888776655444
No 33
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.06 E-value=1.1e-07 Score=90.24 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=113.4
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----c----------------ceE
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----E----------------GSY 104 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~----------------~~~ 104 (398)
.-..++|.+..++.|.+++..+ .-.+.++++||+|+||||+|+.+++.+...- + ...
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 3456899999999999998753 2345788999999999999999998864321 0 111
Q ss_pred EEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCc
Q 015918 105 FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGS 182 (398)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~ 182 (398)
++. ...... .+...++...+... -..+.+-++|||+++.. .....+...+......+
T Consensus 90 ~~~----~~~~~~-~~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 90 EID----AASNNG-VDDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred Eee----ccccCC-HHHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 111 000001 01111121111100 01234458999999744 44566666665445566
Q ss_pred EEEEEeCChh-HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 183 RILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 183 ~iliTsR~~~-~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
.+|+++.+.. +.. ..+....+++++++.++..+++...+...+.. ..++.+..+++.++|.|..+.....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 6666665543 222 22455788999999999999998766332222 2346788999999999987665543
No 34
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=3.8e-08 Score=96.47 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=113.1
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc---------------------CcceE
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSY 104 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~---------------------f~~~~ 104 (398)
.-.++||-+..++.|.+++.... -...++++||+|+||||+|+.+++.+... ++.++
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 44679999999999999997632 34567899999999999999999885321 11111
Q ss_pred EEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCc
Q 015918 105 FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGS 182 (398)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~ 182 (398)
.+. ........++ .++...+... -..++.-++|||+++. ......++..+...+..+
T Consensus 92 eid----aas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~ 150 (509)
T PRK14958 92 EVD----AASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV 150 (509)
T ss_pred EEc----ccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence 111 1111111111 1111111100 0124556899999984 345666666665545566
Q ss_pred EEEEEeCCh-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 183 RILITARDK-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 183 ~iliTsR~~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
.+|++|.+. .+. ...+.+..+++.+++.++..+.+...+...+. ....+.+..+++.++|.+.-+..+.
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 666655443 222 22345677899999999999887776633222 2335668889999999987665544
No 35
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=5.9e-08 Score=94.17 Aligned_cols=186 Identities=16% Similarity=0.115 Sum_probs=109.9
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cc----------------eE
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EG----------------SY 104 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~----------------~~ 104 (398)
.-.+++|.+...+.|...+..+ .-++.++++||+|+||||+|+.+++.+...- +| ..
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 4467999999988888888753 2335688999999999999999998854321 00 11
Q ss_pred EEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCc
Q 015918 105 FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGS 182 (398)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~ 182 (398)
.+. .+.......+ ..+...... .-..+++-++|||+++.. .....++..+...+..+
T Consensus 90 el~----aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 90 ELD----AASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred EEe----CcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 111 0000011111 111110000 011245669999999754 34555655554434445
Q ss_pred EEEEEeCCh-hHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHHHHh
Q 015918 183 RILITARDK-QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRFL 256 (398)
Q Consensus 183 ~iliTsR~~-~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~l~~~l 256 (398)
.+|++|.++ .+.. ..+.+..+.+.+++.++....+...+.... ....++.+..+++.++|. +.++..+-.+.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555444432 2222 234667899999999999999988763222 123457788999988765 55666665543
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=99.04 E-value=2.3e-08 Score=98.27 Aligned_cols=218 Identities=17% Similarity=0.151 Sum_probs=125.3
Q ss_pred cccCcccccchhHHHHHHHhccCCC-CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT-MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~-~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
..-.+++|++..++.|.+|+..... ...+.++|+||+|+||||+|..+++.+. ++. +.+. .+.... .+.+.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~-~~~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRT-ADVIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----cccccc-HHHHH
Confidence 3456799999999999999874321 2368899999999999999999999863 222 2222 111111 12222
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH------hHHHHHccCCCCCCCcEEEEEeCCh-hHH--
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR------QIEFLIGNLDWFASGSRILITARDK-QAL-- 194 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~~~~~~~~iliTsR~~-~~~-- 194 (398)
.+......... ....++-+||||+++... ....+...+. ...+.+|+++.+. ...
T Consensus 83 ~~i~~~~~~~s--------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSGS--------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccCc--------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 22222211111 011356799999997532 2444443333 2233455555332 111
Q ss_pred HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc-CCHHHHHHHHHHhcc
Q 015918 195 INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEM 273 (398)
Q Consensus 195 ~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~ 273 (398)
.....+..+.+++++..+....+...+...... ...+....+++.++|....+......+.. ........+......
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRR 224 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcC
Confidence 222456789999999999999998876332222 23577999999999988877654444433 211111111111223
Q ss_pred CChhhHHHHHHHhHh
Q 015918 274 VPQMEIQEVLKISYD 288 (398)
Q Consensus 274 ~~~~~v~~~l~~~~~ 288 (398)
.....++.++...+.
T Consensus 225 d~~~~if~~l~~i~~ 239 (482)
T PRK04195 225 DREESIFDALDAVFK 239 (482)
T ss_pred CCCCCHHHHHHHHHC
Confidence 334556666655554
No 37
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=2.1e-08 Score=99.53 Aligned_cols=197 Identities=14% Similarity=0.076 Sum_probs=112.8
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-.+++|.+..++.|..++..+ .-...++++|++|+||||+|+.+++.+...... .+..+. .+.....+...
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg----~C~sCr~i~~g 85 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCG----VCQSCTQIDAG 85 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCc----ccHHHHHHhcc
Confidence 34467999999999999999863 234678999999999999999999875332110 000000 00000000000
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHh--------hCCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCCh-hH
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKR--------LTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDK-QA 193 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~--------l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~-~~ 193 (398)
-..++..- +......++.++.. ..++.-++|||+++... ....|+..+......+.+|++|.+. .+
T Consensus 86 ~~~DvlEi---daAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 86 RYVDLLEI---DAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred CccceEEE---eccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00000000 00000011111111 12455699999997543 3455555554434566666666543 22
Q ss_pred H-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 194 L-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 194 ~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
. ...+.+..+.+.+++.++..+.+...+...+. ....+.+..|++.++|.+.-+..+.
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 11234567889999999999999887743222 2345678999999999997666554
No 38
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=8.5e-08 Score=95.35 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=113.6
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC----cceEEEeechhhhhcCCHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF----EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.-.++||-+..++.|.+++..+. -...++++|+.|+||||+|+.+++.+...- ....... +..+ ..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p----Cg~C----~~ 83 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP----CGVC----QA 83 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC----CCcc----HH
Confidence 44678999999999999987642 346678999999999999999998854211 0000000 0000 01
Q ss_pred HHHHHHHHhcC-CCCCCCCccchHHHHHhh--------CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCC
Q 015918 122 RKELLSTLLND-GNMNKFPNIGLNFQSKRL--------TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 122 ~~~i~~~l~~~-~~~~~~~~~~~~~l~~~l--------~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
+..+...-... ...+...+..++.++..+ .++.-++|||+++. ......++..+......+.+|++|.+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 11110000000 000000001111111111 23445899999984 34566677666554556566655543
Q ss_pred h-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 191 K-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 191 ~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
. .+. ...+.+..+.+.+++.++..+.+...+...+. ....+.+..+++.++|.+..+..+.
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al~lL 226 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDALSLT 226 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 222 23356788999999999999999877633222 2335678899999999887665553
No 39
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.03 E-value=4e-10 Score=96.33 Aligned_cols=52 Identities=27% Similarity=0.414 Sum_probs=36.7
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.|+||+.+++++.+.+........+.++|+|++|+|||+|++++.+.+....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999633325679999999999999999999999987773
No 40
>PRK08727 hypothetical protein; Validated
Probab=99.03 E-value=1.9e-08 Score=89.14 Aligned_cols=173 Identities=17% Similarity=0.102 Sum_probs=102.5
Q ss_pred Ccccccc-hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHH
Q 015918 48 NKLVGVD-SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL 126 (398)
Q Consensus 48 ~~fvGR~-~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (398)
+.|++.. ..+..+.....+ .....+.|+|++|+|||.|+..+++...++...+.|+. ... ......+.+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~~---~~~~~~~~~ 88 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQA---AAGRLRDAL 88 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HHH---hhhhHHHHH
Confidence 3455444 344444443322 33456999999999999999999998777666667765 211 000011111
Q ss_pred HHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----HhHHHHHccCCC-CCCCcEEEEEeCChhH--------
Q 015918 127 STLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQA-------- 193 (398)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----~~~~~l~~~l~~-~~~~~~iliTsR~~~~-------- 193 (398)
..+. ..-+|||||++.. .....+...+.. ...+..+|+|++....
T Consensus 89 ---------------------~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 89 ---------------------EALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred ---------------------HHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 1111 2238999999632 111223322221 1235668998875421
Q ss_pred -HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 194 -LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 194 -~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
...+.....+++++++.++..+++.+++..... ...++....+++.+.|....+..+..
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l~~L~ 206 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLVALLD 206 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111224578999999999999999986643322 23457788899999877776644433
No 41
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=9.7e-08 Score=93.11 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=112.7
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcc---eEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEG---SYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~ 121 (398)
..-.+++|.+..++.|...+..+ .-.+.++++||+|+||||+|+.+++.+...... ..+.. +..+. .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~----C~~C~----~ 87 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT----CEQCT----N 87 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC----CCCCh----H
Confidence 34457899999999999877653 234678999999999999999999886432100 00000 00000 0
Q ss_pred HHHHHHHHhcCC-CCCCCCccchHHHHH---h-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-C
Q 015918 122 RKELLSTLLNDG-NMNKFPNIGLNFQSK---R-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITA-R 189 (398)
Q Consensus 122 ~~~i~~~l~~~~-~~~~~~~~~~~~l~~---~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTs-R 189 (398)
+..+.......- ..+......++.+.. . +.+++-++|||+++.. ..+..|+..+....+.+.+|++| .
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 000000000000 000000001111111 1 2345668999999853 44666766665444555555544 3
Q ss_pred ChhHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 190 DKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 190 ~~~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
...+... .+.+..+++.+++.++..+.+...+...+ .....+.+..+++.++|.+.-+...
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--i~ie~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--LKTDIEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333332 24567899999999999999988774322 2234567888999999988765443
No 42
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=5.6e-08 Score=91.37 Aligned_cols=200 Identities=13% Similarity=0.050 Sum_probs=114.5
Q ss_pred ccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHHH
Q 015918 44 FETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 44 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 121 (398)
|.....++|.+...+.|.+.+..+ .-....+++||.|+||+|+|..+++.+-.+-+ .............+.. -..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-c~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-HPV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC-ChH
Confidence 345678999999999999998763 23456889999999999999999998532211 0000000000000000 011
Q ss_pred HHHHHHHHhcC----C-C-CCC----CCccchHHHH---Hhh-----CCceEEEEEeCCC--ChHhHHHHHccCCCCCCC
Q 015918 122 RKELLSTLLND----G-N-MNK----FPNIGLNFQS---KRL-----TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASG 181 (398)
Q Consensus 122 ~~~i~~~l~~~----~-~-~~~----~~~~~~~~l~---~~l-----~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~ 181 (398)
+..+....... . . .+. .....++.++ ..+ .+.+.++|||+++ +......++..+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111100000 0 0 000 0112223332 222 2466799999997 445566666666554456
Q ss_pred cEEEEEeCCh-hHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 182 SRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 182 ~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
..+|++|... .+.+. .+.+..+.+.+++.+++.+++...... .. .+....+++.++|+|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 6666666554 33222 346788999999999999999876411 11 122367899999999866444
No 43
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=9.1e-08 Score=93.91 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=109.7
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC---------------------cceE
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF---------------------EGSY 104 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f---------------------~~~~ 104 (398)
.-.+++|.+..++.|...+..+ .....++++||+|+||||+|+.+++.+.... ...+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 3457899999999999998753 2345678999999999999999998764321 1111
Q ss_pred EEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCc
Q 015918 105 FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGS 182 (398)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~ 182 (398)
++. ........+ ...+...+.. .-..+++-++|||+++. ......|+..+...+..+
T Consensus 92 eid----aas~~gvd~-ir~ii~~~~~----------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 92 EID----AASRTGVEE-TKEILDNIQY----------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred Eee----cccccCHHH-HHHHHHHHHh----------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 111 000001110 0111111100 01234566999999974 344666666665544566
Q ss_pred EEEEEeCCh-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 183 RILITARDK-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 183 ~iliTsR~~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
.+|++|.+. .+. ...+.+..+++.+++.++..+.+...+...+ ....++.+..+++.++|.+.-+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~a 217 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDA 217 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 555544333 333 2234678899999999999988887653222 2234566889999999988643
No 44
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.00 E-value=2e-08 Score=88.89 Aligned_cols=172 Identities=18% Similarity=0.204 Sum_probs=101.6
Q ss_pred Cccc-ccchhH-HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 48 NKLV-GVDSRI-EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 48 ~~fv-GR~~el-~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
++|+ |+.++. ..+.++... . ...+.++|+|++|+|||+||..+++.....-....++. ... .. ..
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~-~-~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~---~~---~~- 84 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAG-P-VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS---PL---LA- 84 (227)
T ss_pred cccccCCcHHHHHHHHHHHhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH---hH---HH-
Confidence 3444 554444 334444432 1 34568899999999999999999998655444455555 111 00 00
Q ss_pred HHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCC-CCC-cEEEEEeCChhHHH------
Q 015918 126 LSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWF-ASG-SRILITARDKQALI------ 195 (398)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~-~~~-~~iliTsR~~~~~~------ 195 (398)
+ .. ....-+|+|||++.. .....+...+... ..+ ..+++|++..+...
T Consensus 85 ---~------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 85 ---F------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred ---H------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 0 00 112347999999643 2223333333211 123 34666666432111
Q ss_pred --hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 196 --NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 196 --~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.......+.+++++.++...++...+.... ....++..+.+++.+.||+..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222347899999999888888776542222 22345789999999999999988777765
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.99 E-value=3.2e-08 Score=87.74 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=105.4
Q ss_pred ccCcccccch-hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 46 TENKLVGVDS-RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 46 ~~~~fvGR~~-el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
-+..++|-.. .+..+.++... ...+.+.|+||+|+|||+|+..+++........+.|+. ...... ...+
T Consensus 21 fd~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~~---~~~~ 90 (235)
T PRK08084 21 FASFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRAW---FVPE 90 (235)
T ss_pred ccccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHhh---hhHH
Confidence 3344446333 34444444433 34468999999999999999999998766555566665 211000 0001
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh---HhHH-HHHccCCCC--CCCcEEEEEeCChhH-----
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP---RQIE-FLIGNLDWF--ASGSRILITARDKQA----- 193 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---~~~~-~l~~~l~~~--~~~~~iliTsR~~~~----- 193 (398)
+ ...+.. --+|+|||++.. ..++ .+...+... ....++|+||+.++.
T Consensus 91 ~---------------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 91 V---------------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred H---------------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 1 011111 137999999642 2222 222222211 223478888875522
Q ss_pred ----HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 194 ----LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 194 ----~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...+.....+++++++.++-.+++.+.+.... ....++..+.+++++.|....+..+...+
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 22233557899999999999999987663322 23446889999999998888776655544
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.99 E-value=2.6e-09 Score=85.79 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=74.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc-----CcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNF 145 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 145 (398)
+.+.++|+|++|+|||+++..+++.+... -..++|+. .........+...++..+..........+...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 45789999999999999999999986543 34466776 5555688999999999998776542222334456
Q ss_pred HHHhhCCc-eEEEEEeCCCCh-H--hHHHHHccCCCCCCCcEEEEEeCC
Q 015918 146 QSKRLTRK-KVLIVFDDVNHP-R--QIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 146 l~~~l~~~-~~LlvlDd~~~~-~--~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
+.+.+... ..+||||+++.. . .+..+..... ..+.++|++...
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66655544 469999999765 2 2344433333 667788887765
No 47
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=7.7e-08 Score=95.86 Aligned_cols=196 Identities=15% Similarity=0.103 Sum_probs=114.2
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-.++||.+..++.|...+..+. -...++++|++|+||||+|+.+++.+...... . ..++... ..+..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~----~~pCg~C-~~C~~ 81 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T----ATPCGEC-DNCRE 81 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C----CCCCCCC-HHHHH
Confidence 345679999999999999997632 33556899999999999999999885432100 0 0000000 11111
Q ss_pred HHHHHhcC-CCCCCCCccchH---HHHHh-----hCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-h
Q 015918 125 LLSTLLND-GNMNKFPNIGLN---FQSKR-----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-Q 192 (398)
Q Consensus 125 i~~~l~~~-~~~~~~~~~~~~---~l~~~-----l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~ 192 (398)
+...-... ...+......++ .+... ..++.-++|||+++. ......|+..+-.-...+++|++|.+. .
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 11000000 000000000111 11111 234666999999974 445666766665445566565555443 3
Q ss_pred HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 193 ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 193 ~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+.. ..+.+..+.+.+++.++..+.+...+.... .....+....+++.++|.+.-...+.
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 332 234578899999999999999987662222 22335668889999999988665554
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=1.2e-07 Score=90.89 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=114.9
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-.+++|.+..++.|..++..+. -...++++||+|+||||+|+.+++.+........-.+ ..+.....+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC-----g~C~sC~~i~~g 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC-----NECTSCLEITKG 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc-----CCCcHHHHHHcc
Confidence 344679999999999999987632 2346899999999999999999998643311000000 000011111100
Q ss_pred HHHHHhcCCCCCCC-Ccc---chHHHHH-hhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCC-hhHHH-
Q 015918 125 LLSTLLNDGNMNKF-PNI---GLNFQSK-RLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALI- 195 (398)
Q Consensus 125 i~~~l~~~~~~~~~-~~~---~~~~l~~-~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~- 195 (398)
...++..-...... .+. ..+.+.. -..++.-++|||+++. ......|+..+......+.+|++|.+ ..+..
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 00000000000000 000 1111111 1234567999999984 44577777666544445555555544 33322
Q ss_pred hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 196 NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 196 ~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
..+.+..+.+.+++.++..+.+...+...+ ....++.+..|++.++|.+.-.-.+.
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence 234567899999999999999988763222 23346779999999999997554443
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=5.6e-08 Score=83.34 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc---------------------CcceEEEeechhhhhcCC
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGK 117 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~ 117 (398)
.|.+.+..+ .-...++++|++|+|||++|+.+.+.+... ++...++... .....
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK 77 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC
Confidence 344555432 234678999999999999999999886432 1112222100 00011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-hHH
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QAL 194 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~~ 194 (398)
. +.+.++...+... -..+.+-++||||++.. .....++..+...++...+|+++++. .+.
T Consensus 78 ~-~~i~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 78 V-DQVRELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred H-HHHHHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 1 1111111111100 01245668999999743 34566666665545566677766544 222
Q ss_pred H-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH
Q 015918 195 I-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 247 (398)
Q Consensus 195 ~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 247 (398)
. ..+....+.+.+++.++..+.+.+. + ..++.+..+++.++|+|.
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCcc
Confidence 2 1235678999999999999999876 2 124669999999999986
No 50
>PTZ00202 tuzin; Provisional
Probab=98.97 E-value=1.2e-07 Score=88.45 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=101.0
Q ss_pred ccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 44 FETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 44 ~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
|++...|+||+.|+..|...|.......+++++|+|++|+|||||++.+..... ...++.+. ....+++.
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eElLr 327 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDTLR 327 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHHHH
Confidence 477889999999999999999754434557999999999999999999997654 23444422 25689999
Q ss_pred HHHHHHhcCCCCCCCCcc---chHHHHHh-hC-CceEEEEEeCCC--ChH-hHHHHHccCCCCCCCcEEEEEeCChhHHH
Q 015918 124 ELLSTLLNDGNMNKFPNI---GLNFQSKR-LT-RKKVLIVFDDVN--HPR-QIEFLIGNLDWFASGSRILITARDKQALI 195 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~---~~~~l~~~-l~-~~~~LlvlDd~~--~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 195 (398)
.++.+++..... ...+. ..+.+... .. +++.+|||-==+ +.. .+.+... +...-.-|+|++----+....
T Consensus 328 ~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcch
Confidence 999999863221 11111 22222221 12 566666654332 222 1121111 111134566766433221111
Q ss_pred ---hcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 196 ---NCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 196 ---~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
.+.....+.+++|+.+++-.+.+...
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11244678899999999998886554
No 51
>PF13173 AAA_14: AAA domain
Probab=98.97 E-value=4.2e-09 Score=84.23 Aligned_cols=120 Identities=15% Similarity=0.091 Sum_probs=76.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
.++++|.|+.|+|||||++++++... ....++|+.. ........... + ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~----~~~~~~~~~~~-------------~----~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINF----DDPRDRRLADP-------------D----LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeecc----CCHHHHHHhhh-------------h----hHHHHHHhhc
Confidence 36899999999999999999998876 2333556541 11000000000 0 1122222233
Q ss_pred CceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHhc------CCCeeEEcCCCChhhh
Q 015918 152 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINC------GVNKIYQIKELVHVDA 213 (398)
Q Consensus 152 ~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~------~~~~~~~l~~L~~~e~ 213 (398)
.++.+|+||+++....|......+....+..++++|+......... +....++|.||+-.|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4678999999988777777766666545678999999876544321 2345688999997763
No 52
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.95 E-value=3.7e-08 Score=86.15 Aligned_cols=263 Identities=15% Similarity=0.131 Sum_probs=152.6
Q ss_pred cccCcccccchhHHHHHHHhccCC--CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL--TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~--~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-.+|+|.++..+.|.=++.... +...-.++++||||.||||||.-+++....++. +. + ...-+-.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~t------s-Gp~leK~ 91 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----IT------S-GPALEKP 91 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ec------c-cccccCh
Confidence 445689999999888887775322 155678999999999999999999998765532 11 0 1111111
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-hHHHHH-ccCCC-------------------CCCC
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-QIEFLI-GNLDW-------------------FASG 181 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~~~l~-~~l~~-------------------~~~~ 181 (398)
.+++.-+.. +.. .=++++|+++... ..++++ +.+.. ..+.
T Consensus 92 gDlaaiLt~------------------Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 92 GDLAAILTN------------------LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhHHHHHhc------------------CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 112222211 222 2277889997432 122221 11110 0222
Q ss_pred cEEEEEeCChhHHHhc--CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 015918 182 SRILITARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK 259 (398)
Q Consensus 182 ~~iliTsR~~~~~~~~--~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~ 259 (398)
..|=.|||...+..-+ ......+++..+.+|..+++.+.+.- ......++.+.++++++.|-|.-..-+.+.+++.
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVRDF 230 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 2344688865433222 35567889999999999999887622 2223345779999999999999777776666542
Q ss_pred CHHHHHHHHHHhccCChh---hHHHHHHHhHhcCchHHHHHHHHhhc-C-cCCcChHHHHHHHHhcCccccccHH-HHhh
Q 015918 260 RKEVWENAISKLEMVPQM---EIQEVLKISYDGLDDKEKNIFLDIAC-F-LVGEDRDIVTKYLNACEFFATSGIE-VLVD 333 (398)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~---~v~~~l~~~~~~L~~~~~~~l~~la~-~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~ 333 (398)
. ... .-...... .....+...=..|..-.++.|..+.- | +.++..+.+...++.+....++.++ -|++
T Consensus 231 a-----~V~-~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 231 A-----QVK-GDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred H-----HHh-cCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 1 000 00000011 11122222223345555555543333 3 3448888888888776665555554 5888
Q ss_pred ccCeeeccCCce
Q 015918 334 KSLITISEYNKI 345 (398)
Q Consensus 334 ~~Ll~~~~~~~~ 345 (398)
.|+++.+..|+.
T Consensus 305 ~gfi~RTpRGR~ 316 (332)
T COG2255 305 QGFIQRTPRGRI 316 (332)
T ss_pred hchhhhCCCcce
Confidence 999998877864
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.94 E-value=1.8e-08 Score=90.82 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=96.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
+..+.+++|||+|+||||||+.++..-+.+- ..|+. .+....-..-+.+++.+-.. ...
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ife~aq~---------------~~~ 218 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDIFEQAQN---------------EKS 218 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHHHHHHHH---------------HHh
Confidence 6778899999999999999999998755542 55665 22222222223333333221 123
Q ss_pred hCCceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEE--EeCChh---HHHhcCCCeeEEcCCCChhhhHHHHHHhh-
Q 015918 150 LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILI--TARDKQ---ALINCGVNKIYQIKELVHVDALKLLNQCA- 221 (398)
Q Consensus 150 l~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~ili--TsR~~~---~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~- 221 (398)
+..++.+|++|+++ +-.+-+.|++.. .+|..++| ||-++. ....++.+.++.|++|+.++...++.+-.
T Consensus 219 l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 46789999999996 445556665554 35555555 443331 22334567889999999999999987632
Q ss_pred --cCCC-----CCC---cchHHHHHHHHHHcCCChH
Q 015918 222 --FGRD-----HPD---ASYIELTHEAIKYAQGVPI 247 (398)
Q Consensus 222 --~~~~-----~~~---~~~~~~~~~i~~~~~g~Pl 247 (398)
.... .+. .....+.+.++..|.|-..
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 111 1345677888888888654
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.94 E-value=4.6e-08 Score=94.73 Aligned_cols=193 Identities=14% Similarity=0.146 Sum_probs=114.9
Q ss_pred cccCcccccchh--HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSR--IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~e--l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-+..++|.... .....++..... .....++|+|++|+|||+|+..+++.+.... ..++|+. ..+
T Consensus 113 tFdnFv~g~~n~~A~~aa~~~a~~~~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~ 181 (450)
T PRK14087 113 TFENFVIGSSNEQAFIAVQTVSKNPG-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDE 181 (450)
T ss_pred chhcccCCCcHHHHHHHHHHHHhCcC-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHH
Confidence 444456677654 223333333322 3346789999999999999999999765432 2334443 233
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----HhHHHHHccCCCC-CCCcEEEEEeCChh-HH
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQ-AL 194 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----~~~~~l~~~l~~~-~~~~~iliTsR~~~-~~ 194 (398)
+...+...+.... ...+.+...... .-+|+|||++.. ...+.+...+... ..+..+|+|+...+ ..
T Consensus 182 f~~~~~~~l~~~~-------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 182 FARKAVDILQKTH-------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred HHHHHHHHHHHhh-------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 4444444332210 012233333333 338889999632 2233443333221 23446777765432 21
Q ss_pred --------HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 195 --------INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 195 --------~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
..+..+..+.+.+++.++..+++.+.+..........++.+..|++.+.|+|..+.-+...+
T Consensus 254 ~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 254 NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12235677889999999999999988743222124557889999999999999998777554
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1e-07 Score=89.14 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=115.7
Q ss_pred cccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC----cceEEEeechhhhhcCCH
Q 015918 43 TFETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF----EGSYFAHNVREAEETGKL 118 (398)
Q Consensus 43 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~ 118 (398)
.|.....++|.+...+.+...+..+ ..+..++|+|+.|+||||+|..+++.+...- ....... .. .-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~------~~-~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD------PD-PA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC------CC-CC
Confidence 3456678999999999999999764 2455789999999999999999999864421 0000000 00 00
Q ss_pred HHHHHHHHHHHhcC-----CCC-CC----CCcc---chHHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCC
Q 015918 119 ADLRKELLSTLLND-----GNM-NK----FPNI---GLNFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWF 178 (398)
Q Consensus 119 ~~~~~~i~~~l~~~-----~~~-~~----~~~~---~~~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~ 178 (398)
-..+..+....... ... +. .... .+..+...+ .++.-++|||+++. ......++..+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 11222221110000 000 00 0111 222222222 34566999999974 44455566655543
Q ss_pred CCCcEEEEEeCCh-hHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 179 ASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 179 ~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
.....+|++|..+ .+.+. .+.+..+.+.+++.++..+++..... ... ...+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~--~~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGS--SQG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhc--ccC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455555444333 22222 23567899999999999999987431 111 224557889999999998665443
No 56
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.3e-07 Score=93.47 Aligned_cols=195 Identities=12% Similarity=0.041 Sum_probs=110.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-.+++|.+..++.|..++..+. -...++++|++|+||||+|+.+++.+...... .... +..+ ..+..+
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~--~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~p----cg~C----~~C~~i 82 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR--LHHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATP----CGVC----SACLEI 82 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC--CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCC----CCCC----HHHHHH
Confidence 44678999999999999987632 34567899999999999999999886432100 0000 0000 000000
Q ss_pred HHHHhcC-CCCCCCCccchHH---HHHh-----hCCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEeCCh-hH
Q 015918 126 LSTLLND-GNMNKFPNIGLNF---QSKR-----LTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITARDK-QA 193 (398)
Q Consensus 126 ~~~l~~~-~~~~~~~~~~~~~---l~~~-----l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTsR~~-~~ 193 (398)
...-... ...+......++. +... ..+++-++|||+++... ....++..+......+.+|++|.++ .+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhC
Confidence 0000000 0000000001111 1111 13456699999998543 4566666665544566566555433 22
Q ss_pred H-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 194 L-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 194 ~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
. ...+.+..+++.+++.++..+.+...+...+ .....+.+..+++.++|.+.-+..+.
T Consensus 163 l~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 1123457789999999999998877663222 22334667889999999887444333
No 57
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=4.1e-07 Score=86.54 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=110.5
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc--------CcceEEEeechhhhhcCC
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETGK 117 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 117 (398)
.-.+++|.+..++.+.+.+..+ .-.+.++++||+|+||||+|..+++.+... +...++-. . ......
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~ 89 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNS 89 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCC
Confidence 4467899999999999999753 245688899999999999999998886432 11111111 0 001111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCC-hhHH
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARD-KQAL 194 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~-~~~~ 194 (398)
.. ....+...+.... ..+++-++++|+++.. ..+..+...+......+.+|+++.. ....
T Consensus 90 ~~-~i~~l~~~~~~~p----------------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 VD-DIRNLIDQVRIPP----------------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HH-HHHHHHHHHhhcc----------------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 11 1112222211100 1234458999999743 3355565544433344555555532 2222
Q ss_pred -HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 195 -INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 195 -~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
...+.+..+++++++.++....+...+...+. ...++.++.+++.++|.+..+.....
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22235567899999999999988876633222 23357789999999998875544433
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.4e-08 Score=90.61 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=106.3
Q ss_pred CcccccchhHHHHHHHhccCCC-------CCceEEEEEcCCCccHHHHHHHHHHHhhccC--------------------
Q 015918 48 NKLVGVDSRIEEILSLLGVGLT-------MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-------------------- 100 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~-------~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-------------------- 100 (398)
+.++|.+..++.|.+++..+.. .-.+.++++||+|+|||++|..+++.+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4688999999999999976431 1356788999999999999999998743321
Q ss_pred cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCC
Q 015918 101 EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWF 178 (398)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~ 178 (398)
+...++..- .......+ ++++...+... -..+++-++|||+++.. .....++..+...
T Consensus 85 pD~~~i~~~---~~~i~i~~-iR~l~~~~~~~----------------p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVAPE---GLSIGVDE-VRELVTIAARR----------------PSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEeccc---cccCCHHH-HHHHHHHHHhC----------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 112222100 00011111 11111111100 01234558899999743 3445566655544
Q ss_pred CCCcEEEEEeCCh-hHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 015918 179 ASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKI 251 (398)
Q Consensus 179 ~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~ 251 (398)
+++..+|++|.+. .+.+. .+.+..+.+.+++.++..+.+.... + . ..+.+..++..++|.|.....
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~----~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V----DPETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C----CHHHHHHHHHHcCCCHHHHHH
Confidence 4566566655543 33332 2456889999999999998886432 1 1 134577889999999975433
No 59
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=2.3e-07 Score=92.36 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=115.1
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcce----EEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGS----YFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~ 120 (398)
..-.+++|.+..++.|.+++..+ .-...++++|++|+||||+|+.+++.+....... .+-.+ ..+ .
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c----~ 90 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVG----E 90 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----ccc----H
Confidence 34567999999999999999763 2355788999999999999999999864332110 00000 000 0
Q ss_pred HHHHHHHHHhcCC-CCCCCCccchHHHH---Hh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeC
Q 015918 121 LRKELLSTLLNDG-NMNKFPNIGLNFQS---KR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 121 ~~~~i~~~l~~~~-~~~~~~~~~~~~l~---~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
.+..+.......- ..+......++.++ .. ...++-++|||+++.. .....|+..+......+.+|+++.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 1111110000000 00000001111111 11 1234458999999743 446666666655455666665553
Q ss_pred -ChhHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 190 -DKQALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 190 -~~~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
...+.. ..+.+..+.+.+++.++....+.+.+..... ....+.+..+++.++|.+..+....
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 333222 2245678999999999999999887632222 2334778999999999998765544
No 60
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.92 E-value=5.2e-08 Score=98.99 Aligned_cols=179 Identities=20% Similarity=0.226 Sum_probs=105.4
Q ss_pred cccCcccccchhHH---HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIE---EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~---~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 121 (398)
..-.+|+|++..+. .+.+.+.. +....++|+||+|+||||||+.+++.....| ..+. .. .....++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f---~~ln----a~-~~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHF---SSLN----AV-LAGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcc---eeeh----hh-hhhhHHH
Confidence 34456899999884 56666655 4556789999999999999999998865543 1121 10 0011111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChhH-----H
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-----L 194 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~-----~ 194 (398)
..++.... . .. ...+++.+|+|||++. ....+.+...+. .+..+++++..++. .
T Consensus 94 -r~~i~~a~-------------~-~l-~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 94 -RAEVDRAK-------------E-RL-ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred -HHHHHHHH-------------H-Hh-hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 11111110 0 00 0123567999999974 344555555432 34444443332211 1
Q ss_pred HhcCCCeeEEcCCCChhhhHHHHHHhhcC-----CCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 195 INCGVNKIYQIKELVHVDALKLLNQCAFG-----RDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 195 ~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
...+....+.+++++.++...++.+.+.. ........++..+.+++.+.|+..-+.-+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~L 218 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNAL 218 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 12234567999999999999999876531 012233456788999999999877555443
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=2.1e-07 Score=91.57 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=109.5
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-..++|++..++.+.+++..+ ..++.++++||+|+||||+|+.+++.+...-....-.| ..+ ..+..
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C-----g~C----~sCr~ 81 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC-----NSC----SVCES 81 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-----ccc----HHHHH
Confidence 34567999999999999998653 23467889999999999999999988642211000000 000 00111
Q ss_pred HHHHHhcCC-CCCCCCccch---HHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-h
Q 015918 125 LLSTLLNDG-NMNKFPNIGL---NFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-Q 192 (398)
Q Consensus 125 i~~~l~~~~-~~~~~~~~~~---~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~ 192 (398)
+.......- ..+......+ ..+.... ..++-++|||+++. ......|+..+...+..+.+|++|... .
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 100000000 0000000111 1111111 12334799999974 334555655554434455555555333 3
Q ss_pred HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 193 ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 193 ~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+.. ..+.+..+++.+++.++....+...+...+. ....+.+..+++.++|.+.-+..+.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 322 2345678999999999999998876632221 2234668899999999886444333
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.92 E-value=2.6e-08 Score=81.28 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=43.0
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+|++.+++.+...+.. ...+.+.|+|++|+|||++++.+++.+......++++.
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 4788999999998865 34578999999999999999999998754444455554
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=3.1e-07 Score=94.58 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=110.8
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechhhhhcCCHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-.++||.+..++.|..++..+. -...++++|+.|+||||+|+.+++.+.... .|.. | .+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r--i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~--C--------~s--- 77 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR--INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE--C--------DS--- 77 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc--c--------HH---
Confidence 34579999999999999997632 335678999999999999999998864211 1110 0 00
Q ss_pred HHHHHHHHHhcCC---CCCCCCccchHH---HHH-----hhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEE
Q 015918 121 LRKELLSTLLNDG---NMNKFPNIGLNF---QSK-----RLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILIT 187 (398)
Q Consensus 121 ~~~~i~~~l~~~~---~~~~~~~~~~~~---l~~-----~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliT 187 (398)
+..+...-.... ..+......++. +.. -..++.-++|||+++. ......|+..+......+.+|++
T Consensus 78 -C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~ 156 (824)
T PRK07764 78 -CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFA 156 (824)
T ss_pred -HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 111100000000 000000001111 111 1234555899999984 34566666666655566666655
Q ss_pred eCC-hhHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 015918 188 ARD-KQALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 250 (398)
Q Consensus 188 sR~-~~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~ 250 (398)
|.+ ..+.. ..+.+..+++.+++.++..+++.+.+..... ....+.+..+++.++|.+..+.
T Consensus 157 tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 157 TTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred eCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 543 33333 2346788999999999999999876632222 2234667889999999885444
No 64
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.5e-07 Score=89.89 Aligned_cols=191 Identities=13% Similarity=0.076 Sum_probs=109.8
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-.+++|.+..++.|.+++..+ .-...++++||+|+||||+|+.+++.+....... ... +..+ ..+..+
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p----Cg~C----~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATP----CGVC----ESCVAL 79 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCc----cccc----HHHHHh
Confidence 4467999999999999999763 2344578999999999999999998854211000 000 0000 001111
Q ss_pred HHHHhcCC---CCCCCCccchHHH---HHh-----hCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCC-h
Q 015918 126 LSTLLNDG---NMNKFPNIGLNFQ---SKR-----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-K 191 (398)
Q Consensus 126 ~~~l~~~~---~~~~~~~~~~~~l---~~~-----l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~-~ 191 (398)
........ ..+......++.+ ... ..++.-++|||+++. ......|+..+......+.+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 00000000 0000000011111 111 123455899999974 44566666666554556666655544 3
Q ss_pred hHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 192 QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 192 ~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
.+.. ..+.+..+.+.+++.++..+.+...+...+. ....+.+..+++.++|.+..+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~a 216 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDT 216 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3332 2345788999999999999999876633222 233466788999999988643
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2e-07 Score=89.21 Aligned_cols=201 Identities=10% Similarity=0.094 Sum_probs=112.1
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEee-chhhhhcCCHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHN-VREAEETGKLADLR 122 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~-~~~~~~~~~~~~~~ 122 (398)
.-.+++|.+...+.|.+++..+. -...++++||+|+||||+|..+++.+...- +..-|... ...+..+ ..+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~--~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c----~~c 87 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR--VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC----ESC 87 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC--cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC----HHH
Confidence 44679999999999999887632 234588999999999999999998864321 00000000 0000000 001
Q ss_pred HHHHHHHhcCC-CCCCCCcc---chHHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCC-
Q 015918 123 KELLSTLLNDG-NMNKFPNI---GLNFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARD- 190 (398)
Q Consensus 123 ~~i~~~l~~~~-~~~~~~~~---~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~- 190 (398)
..+.......- ..+..... .+..+...+ .+.+-++|+|+++.. ..+..++..+....+...+|+++..
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11100000000 00000000 111111222 234558999999744 3566666666554556666555533
Q ss_pred hhHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 191 KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 191 ~~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
..+... .+....+++.+++.++..+.+...+.... ....++.+..+++.++|.+.-+.....
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 333222 23456788999999999998887663221 223457799999999999976655443
No 66
>PRK05642 DNA replication initiation factor; Validated
Probab=98.90 E-value=8.7e-08 Score=84.89 Aligned_cols=154 Identities=21% Similarity=0.212 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
.+.+.|+|++|+|||.|+..+++.+..+...++|++ .. ++.... ..+...+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~~------~~~~~~------------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----LA------ELLDRG------------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----HH------HHHhhh------------------HHHHHhhh
Confidence 467899999999999999999988766555677766 21 111100 11222222
Q ss_pred CceEEEEEeCCCCh---HhH-HHHHccCCC-CCCCcEEEEEeCChhHH---------HhcCCCeeEEcCCCChhhhHHHH
Q 015918 152 RKKVLIVFDDVNHP---RQI-EFLIGNLDW-FASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLL 217 (398)
Q Consensus 152 ~~~~LlvlDd~~~~---~~~-~~l~~~l~~-~~~~~~iliTsR~~~~~---------~~~~~~~~~~l~~L~~~e~~~Ll 217 (398)
+-. +|+|||++.. ..+ +.+...+.. ...+..+|+|++..+.. ..+.....+++.+++.++-..++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6889999622 222 224333322 13456788888754221 11124577899999999999999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 218 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...+.... ....+++.+.+++.+.|....+..+...+
T Consensus 176 ~~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 86553332 22346889999999998888776665554
No 67
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=7.9e-08 Score=96.41 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=112.8
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-.+++|.+..++.|..++..+ .-...++++|++|+||||+|+.+++.+........... + . .-..+..+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~----c---~-~c~~c~~i 83 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP----C---G-TCEMCRAI 83 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC----C---c-cCHHHHHH
Confidence 4467999999999999988753 23456789999999999999999988642211000000 0 0 00111111
Q ss_pred HHHHhcCC-CCCCCCccch---HHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-hH
Q 015918 126 LSTLLNDG-NMNKFPNIGL---NFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QA 193 (398)
Q Consensus 126 ~~~l~~~~-~~~~~~~~~~---~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~ 193 (398)
........ ..+....... ..+...+ ..++-++|||+++.. .....|+..+........+|+++.+. .+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 11110000 0000000111 1111111 234569999999743 44666666655444555566555433 22
Q ss_pred HH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 194 LI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 194 ~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
.. ..+.+..+.+.+++..+....+...+...+. ....+.+..+++.++|.+..+.....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 2245577889999999999888876633222 23356788999999999976655443
No 68
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=9.4e-07 Score=86.27 Aligned_cols=195 Identities=10% Similarity=0.029 Sum_probs=110.8
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-----CcceEEEeechhhhhcCCHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FEGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-..++|.+...+.|.+++.... -.+..+++|++|+||||+|+.+++.+... .+|....++ ..... ....+
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc-~~i~~-g~~~d 89 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC-VEIDK-GSFPD 89 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH-HHHhc-CCCCc
Confidence 34578999999999999997632 34566789999999999999999886421 111110000 00000 00000
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CChh
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITA-RDKQ 192 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTs-R~~~ 192 (398)
+. .+ .... ...-..+..+.... .+++-++|||+++.. .....++..+....+...+|++| ....
T Consensus 90 ~~-----ei--daas-~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 90 LI-----EI--DAAS-NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred EE-----EE--eCcc-CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 00 00 0000 00000111222211 245669999999744 34555655555434445455544 3333
Q ss_pred HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 193 ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 193 ~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
+.. ..+.+..+.+.+++.++....+..++...+. ....+.+..+++.++|++..+.....
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 2345678999999999999998886633222 23356788899999998876655543
No 69
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=4.2e-07 Score=89.92 Aligned_cols=196 Identities=13% Similarity=0.112 Sum_probs=112.1
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-.+++|.+...+.|.+.+.... -...++++|++|+||||+|+.+++.+..... ...+.. + ..+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~r--i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~-------C----~sC~ 80 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENR--VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT-------C----EQCR 80 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCC--CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc-------c----HHHH
Confidence 44578999999999999887532 2567889999999999999999988642210 000000 0 0001
Q ss_pred HHHHHHhcCC-CCCCCCccch---HHHHHh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-
Q 015918 124 ELLSTLLNDG-NMNKFPNIGL---NFQSKR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK- 191 (398)
Q Consensus 124 ~i~~~l~~~~-~~~~~~~~~~---~~l~~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~- 191 (398)
.+........ ..+......+ ..+... ..++.-+||||+++.. .....|+..+........+|++|.+.
T Consensus 81 ~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 1100000000 0000000011 111111 1345569999999754 44566666654434455566655443
Q ss_pred hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 015918 192 QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKILGRFL 256 (398)
Q Consensus 192 ~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~l~~~l 256 (398)
.+. ...+.+..+++.+++.++..+.+...+..... ....+.+..+++.++|.+ .++..+-+.+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333 22345678899999999999999876632221 233577899999999976 4666555443
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=6.7e-07 Score=83.06 Aligned_cols=176 Identities=14% Similarity=0.196 Sum_probs=111.4
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc-----cCcceEEEeechhhhhcCCHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR-----RFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
.+++|.+...+.+.+++..+ .-++...++||.|+||||+|..+++.+.. .++....+... ........++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHHH-
Confidence 45789899999999998753 24567789999999999999999987532 22233222210 0111222222
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCChhHH-Hh-cC
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CG 198 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~-~~-~~ 198 (398)
.++...+.... ..+++-++|||+++ +......++..+...+.++.+|++|.+.... +. .+
T Consensus 79 r~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 22222221111 12345578888886 4556777887777667778888777655321 11 24
Q ss_pred CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 015918 199 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 250 (398)
Q Consensus 199 ~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~ 250 (398)
.+..+.+.+++.++....+.+... . ...+.+..++..++|.|.-+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~--~----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN--D----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc--C----CCHHHHHHHHHHcCCCHHHHH
Confidence 567899999999999998876541 1 113447788899999887554
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.86 E-value=1.7e-07 Score=82.38 Aligned_cols=146 Identities=13% Similarity=0.090 Sum_probs=91.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
..+.+.|+|++|+|||+|++.+++.. ...|+. .. .+..++...+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~----~~------~~~~~~~~~~--------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-----DALLIH----PN------EIGSDAANAA--------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEec----HH------HcchHHHHhh---------------------
Confidence 34678999999999999999988763 223544 10 1111111111
Q ss_pred CCceEEEEEeCCCChH-hHHHHHccCCCC-CCCcEEEEEeCCh---------hHHHhcCCCeeEEcCCCChhhhHHHHHH
Q 015918 151 TRKKVLIVFDDVNHPR-QIEFLIGNLDWF-ASGSRILITARDK---------QALINCGVNKIYQIKELVHVDALKLLNQ 219 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~~-~~~~l~~~l~~~-~~~~~iliTsR~~---------~~~~~~~~~~~~~l~~L~~~e~~~Ll~~ 219 (398)
.+ -+|+|||++... .-..+...+... ..+..+|+|++.. .....+.....+++++++.++-.+++.+
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 01 178899996321 122233333211 3466788888743 2233334668899999999999999998
Q ss_pred hhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 220 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.+.... ....+++.+.+++++.|....+..+...+
T Consensus 165 ~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 165 LFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 874332 23446889999999998888777554444
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.85 E-value=5.4e-08 Score=100.29 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=98.4
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhhcCCHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.+++||+.++..+.+.|... ...-++++|++|+|||++|..+++++.... ...+|..+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~---~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l--------- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR---KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL--------- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH---------
Confidence 47999999999999988763 345678999999999999999999864431 223343311111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCC
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
... .......+......+...-...+++|+||+++.. +..+.+.+.+. ....++|-+|..
T Consensus 250 ~a~-------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~ 320 (731)
T TIGR02639 250 LAG-------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTY 320 (731)
T ss_pred hhh-------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCH
Confidence 100 0000011111122222222345789999999632 11223333332 234455555544
Q ss_pred hhHH-------HhcCCCeeEEcCCCChhhhHHHHHHhhcC--CCCCCcchHHHHHHHHHHcC
Q 015918 191 KQAL-------INCGVNKIYQIKELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQ 243 (398)
Q Consensus 191 ~~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~--~~~~~~~~~~~~~~i~~~~~ 243 (398)
.+.. ...+....+.+++++.++..++++..... .........+....+++.+.
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSA 382 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhh
Confidence 2221 11234578999999999999999864421 11112234455666666654
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.83 E-value=5.4e-08 Score=101.17 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=103.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc------ceEEEeechhhhh----c
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEE----T 115 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~----~ 115 (398)
.-.+++||+.++.++.+.|.. .....++++|++|+||||+|..+++++..... ..+|...+..... .
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r---~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR---RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc---CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 335899999999999998876 34456779999999999999999998754321 2233222211110 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCChH-------hHH---HHHccCCCCCCCcEE
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNHPR-------QIE---FLIGNLDWFASGSRI 184 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~-------~~~---~l~~~l~~~~~~~~i 184 (398)
..+..-+. ..+.... .+.+++|+||+++... ..+ .|.+.+. ....++
T Consensus 262 ge~e~~lk--------------------~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~ 319 (852)
T TIGR03345 262 GEFENRLK--------------------SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRT 319 (852)
T ss_pred hHHHHHHH--------------------HHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEE
Confidence 11111111 1122111 2468899999996431 111 2333332 334566
Q ss_pred EEEeCChhHH-------HhcCCCeeEEcCCCChhhhHHHHHHhhc--CCCCCCcchHHHHHHHHHHcCCCh
Q 015918 185 LITARDKQAL-------INCGVNKIYQIKELVHVDALKLLNQCAF--GRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 185 liTsR~~~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~~~--~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
|-+|..++.. ...+.+..+.+++++.+++.++++.... .........++....+++.+.++.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 6666554321 1224567899999999999999754331 111122344566777777776544
No 74
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.83 E-value=2.3e-06 Score=80.09 Aligned_cols=276 Identities=13% Similarity=0.089 Sum_probs=144.3
Q ss_pred cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHH-HHHHHHhhccCcceEEEeechhhhhcC---------------
Q 015918 53 VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIA-GAFFSKISRRFEGSYFAHNVREAEETG--------------- 116 (398)
Q Consensus 53 R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~--------------- 116 (398)
|.+.+++|..||.. .....|+|+||.|+||+.|+ .++.+.. +.+.++.|-. +....
T Consensus 1 R~e~~~~L~~wL~e---~~~TFIvV~GPrGSGK~elV~d~~L~~r----~~vL~IDC~~-i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE---NPNTFIVVQGPRGSGKRELVMDHVLKDR----KNVLVIDCDQ-IVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhc---CCCeEEEEECCCCCCccHHHHHHHHhCC----CCEEEEEChH-hhhccChHHHHHHHHHhcCC
Confidence 67789999999987 44569999999999999999 6666542 2244444211 11111
Q ss_pred --------CHHHHHHHHHHHHhcCCC--CCCCCccchHHH-------HH-------------------hh---CCceEEE
Q 015918 117 --------KLADLRKELLSTLLNDGN--MNKFPNIGLNFQ-------SK-------------------RL---TRKKVLI 157 (398)
Q Consensus 117 --------~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l-------~~-------------------~l---~~~~~Ll 157 (398)
++..+++-....+.+... ....+.+....+ +. ++ ...+.+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 111222211111211111 111111111111 11 00 1236799
Q ss_pred EEeCCCCh--------HhHHHHHccCCCCCCCcEEEEEeCChhHHHhc------CCCeeEEcCCCChhhhHHHHHHhhcC
Q 015918 158 VFDDVNHP--------RQIEFLIGNLDWFASGSRILITARDKQALINC------GVNKIYQIKELVHVDALKLLNQCAFG 223 (398)
Q Consensus 158 vlDd~~~~--------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~------~~~~~~~l~~L~~~e~~~Ll~~~~~~ 223 (398)
||||+..- +.+.++...+.. .+-.+||+.|-+......+ .....+.|...+++.+.+++..++..
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99999321 112222222211 3455788888665433322 25577899999999999999988743
Q ss_pred CCCC-------------C-----cchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHHHhccCChhhHHHHHHH
Q 015918 224 RDHP-------------D-----ASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKI 285 (398)
Q Consensus 224 ~~~~-------------~-----~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~~~l~~ 285 (398)
.... . .....-.+.+++..||--.-|+.+++.++... .-..+++. ....++..+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe--~p~~Av~~---iI~qsa~eI~k~ 306 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE--SPEEAVEE---IISQSASEIRKM 306 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC--CHHHHHHH---HHHHHHHHHHHH
Confidence 2110 0 12345578899999999999999999998732 11112222 123333334333
Q ss_pred hHh-c------CchHHHHHHHHhhcCcCC--cChHHHHHHHHhcCc-cccccHHHHhhccCeeecc-CCc
Q 015918 286 SYD-G------LDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEF-FATSGIEVLVDKSLITISE-YNK 344 (398)
Q Consensus 286 ~~~-~------L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~~Ll~~~~-~~~ 344 (398)
-+. . ++=...+++..+-.+... ++...+ ++...-. ..+..|..|.+..||+... +|+
T Consensus 307 fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~l--l~~~lFk~~~E~~L~aLe~aeLItv~~~~G~ 374 (431)
T PF10443_consen 307 FLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNEL--LLSPLFKGNDETALRALEQAELITVTTDNGR 374 (431)
T ss_pred HhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHH--HcccccCCCChHHHHHHHHCCcEEEEecCCc
Confidence 333 0 110112222222222222 443332 2211111 2456899999999999553 444
No 75
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.7e-06 Score=83.93 Aligned_cols=194 Identities=15% Similarity=0.113 Sum_probs=110.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhhcCCHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 119 (398)
.-.+++|.+..++.|.+++..+ .-.+.++++|++|+||||+|+.+++.+...- +|.....+. .......+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~-~i~~~~~~- 90 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK-EISSGTSL- 90 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH-HHhcCCCC-
Confidence 4467999999999999999753 2346688999999999999999998864321 111000000 00000000
Q ss_pred HHHHHHHHHHhcCCCCCCCCccchHHHHHh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-
Q 015918 120 DLRKELLSTLLNDGNMNKFPNIGLNFQSKR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK- 191 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~- 191 (398)
++ -.+ .+.. ...-..+..+... ..+.+-++|+|+++.. .....|...+........+|+++...
T Consensus 91 d~-----~~i--~g~~-~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 91 DV-----LEI--DGAS-HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred ce-----EEe--eccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 00 000 0000 0000001111111 1245668999999743 34555655555444566666665432
Q ss_pred hHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 192 QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 192 ~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
.+.. ..+.+..+++.+++.++..+.+...+...+ ....++.+..+++.++|.+.-+....
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 224567899999999999998887653222 12335678999999999886554443
No 76
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=1.2e-08 Score=93.85 Aligned_cols=284 Identities=18% Similarity=0.181 Sum_probs=183.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
...+.+.++|++|+||||++-++.. +...|.+.+++++.... .+...+...+...++.+. ...+..+..+...
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pi---tD~~~v~~~~ag~~gl~~---~~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPI---TDPALVFPTLAGALGLHV---QPGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeecccc---CchhHhHHHHHhhccccc---ccchHHHHHHHHH
Confidence 3457899999999999999999999 88999999988754433 344444444444444432 2223355567777
Q ss_pred hCCceEEEEEeCCCChH-hHHHHHccCCCCCCCcEEEEEeCChhHHHhcCCCeeEEcCCCChh-hhHHHHHHhhcC---C
Q 015918 150 LTRKKVLIVFDDVNHPR-QIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHV-DALKLLNQCAFG---R 224 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~-e~~~Ll~~~~~~---~ 224 (398)
..+++.++++||..+.. ....+...+....+...++.|+|+.... .......+++|+.. ++.++|...+.- +
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 78899999999986443 2222333333224556688888865221 23455677777765 677776654421 1
Q ss_pred CCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHH----HHHHHHhccCC------hhhHHHHHHHhHhcCchHH
Q 015918 225 DHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVW----ENAISKLEMVP------QMEIQEVLKISYDGLDDKE 294 (398)
Q Consensus 225 ~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~----~~~~~~l~~~~------~~~v~~~l~~~~~~L~~~~ 294 (398)
.............|-++..|.|++|...+...+.-..... ......+.+.. .......+.-++.-|+..+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1222233455778889999999999999988876332211 11111222221 2334566777788899999
Q ss_pred HHHHHHhhcCcCCcChHHHHHHHHhcC-----ccccccHHHHhhccCeeecc---CCceEecHHHHHHHHHHHhhcC
Q 015918 295 KNIFLDIACFLVGEDRDIVTKYLNACE-----FFATSGIEVLVDKSLITISE---YNKIRMHDLMRNMGREIVRQES 363 (398)
Q Consensus 295 ~~~l~~la~~~~~~~~~~l~~~~~~~~-----~~~~~~l~~L~~~~Ll~~~~---~~~~~~H~lir~~~~~~~~~~~ 363 (398)
+-.+..++.|...++.+.......... ......+..|++++++.... .-.|+.-.-.+.|+.+.+.+..
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999988888874332222111 11334678888999988654 2258888899999999988775
No 77
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.80 E-value=3e-07 Score=89.72 Aligned_cols=189 Identities=15% Similarity=0.101 Sum_probs=110.9
Q ss_pred cccCcccccchhH--HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSRI--EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~el--~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 120 (398)
.-+..++|....+ ..+.++..... ...+.++|+|++|+|||+|+..+++.+..+++ .+.|+. . .+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----~------~~ 188 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----S------EK 188 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----H------HH
Confidence 4445566766653 33333333322 34567999999999999999999999877643 344544 1 22
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeCChh-H-
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----QIEFLIGNLDW-FASGSRILITARDKQ-A- 193 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~-~~~~~~iliTsR~~~-~- 193 (398)
+...+...+... ....+...+. ..-+|+|||++... ..+.++..+.. ...+..+++|+...+ .
T Consensus 189 ~~~~~~~~~~~~---------~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 189 FTNDFVNALRNN---------TMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred HHHHHHHHHHcC---------cHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 222333333211 1122333333 24489999996321 12333332221 123445777775432 1
Q ss_pred -------HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 194 -------LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 194 -------~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...+.....+++++.+.++-.+++...+... .....++.++.+++.+.|+...+.-+...+
T Consensus 259 ~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l 326 (450)
T PRK00149 259 PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRL 326 (450)
T ss_pred HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHH
Confidence 1122345689999999999999999887432 223446889999999999988776554444
No 78
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.8e-06 Score=85.72 Aligned_cols=190 Identities=13% Similarity=0.039 Sum_probs=113.5
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-----CcceEEEeechhhhhcCCHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FEGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-.+++|-+..++.|..++..+ .-.+.++++|++|+||||+|+.+++.+... .+|..... .
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~----------C-- 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS----------C-- 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH----------H--
Confidence 4467999999999999999763 244568899999999999999999885432 11111000 0
Q ss_pred HHHHHHHHHhcC-CCCCCCCccchHHHHH--------hhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeC
Q 015918 121 LRKELLSTLLND-GNMNKFPNIGLNFQSK--------RLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 121 ~~~~i~~~l~~~-~~~~~~~~~~~~~l~~--------~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
..+....... ...+...+..++.+.. -..+++-++|||+++.. .....|+..+...+....+|++|.
T Consensus 80 --~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 80 --KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred --HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 0000000000 0000000011111111 11345568999999744 446667766665455666666664
Q ss_pred Ch-hHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 190 DK-QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 190 ~~-~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+. .+.. ..+.+..+++.+++.++..+.+...+...+. ...++.+..+++.++|.+..+..+.
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 2222 2345677999999999999999877633222 2345778889999999887555443
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=2.1e-06 Score=84.07 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=113.1
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-C----cc----------------e
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-F----EG----------------S 103 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f----~~----------------~ 103 (398)
..-.+++|-+...+.|...+..+ .-.+..+++|++|+||||+|+.+++.+... . +| +
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 34467999999999999998763 234566899999999999999999885321 1 11 1
Q ss_pred EEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCC
Q 015918 104 YFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASG 181 (398)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~ 181 (398)
+... ........++. ++....... -..++.-++|||+++.. +....|+..+-..+..
T Consensus 89 ~eld----aas~~gId~IR-elie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMD----AASNRGIDDIR-ELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEec----cccccCHHHHH-HHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 1100 00000111111 111111000 01134558999999743 4456666665544556
Q ss_pred cEEEEEeCCh-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 182 SRILITARDK-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 182 ~~iliTsR~~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+.+|+++.+. .+. ...+.+..+++.+++.++..+.+...+...+. ...++.+..+++.++|.+.-+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6677666554 221 12245678999999999999999876633222 2335778999999999997766554
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.7e-06 Score=86.53 Aligned_cols=198 Identities=11% Similarity=0.077 Sum_probs=110.2
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeec-hhhhhcCCHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNV-REAEETGKLADLR 122 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~-~~~~~~~~~~~~~ 122 (398)
.-.+++|.+..++.|.+++..+ .-...++++||+|+||||+|+.+++.+.-.- ....|.... ..+..+. .+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~----sC 87 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE----SC 87 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH----HH
Confidence 4467999999999999988753 2345588999999999999999998853321 001111000 0000000 01
Q ss_pred HHHHHHHhcC-CCCCCCCcc---chHHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeC-C
Q 015918 123 KELLSTLLND-GNMNKFPNI---GLNFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITAR-D 190 (398)
Q Consensus 123 ~~i~~~l~~~-~~~~~~~~~---~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR-~ 190 (398)
..+...-... ...+..... .+..+...+ .+.+-++|||+++.. .....|+..+........+|+++. .
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1110000000 000000000 111111111 234448899999754 346666666655445555555443 3
Q ss_pred hhHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 015918 191 KQALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKI 251 (398)
Q Consensus 191 ~~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~ 251 (398)
..+.. ..+.+..+++.+++.++....+...+..... ....+.++.+++.++|...-+..
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHH
Confidence 33332 2356788999999999999888876532221 23356789999999997775443
No 81
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.78 E-value=4.7e-07 Score=87.27 Aligned_cols=189 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred cccCcccccchhHHH--HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSRIEE--ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~el~~--l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-+..++|....+.. +.++..... .....++|+|++|+|||+|+..+++.+.++. ..++|+. ..+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~ 176 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEK 176 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHH
Confidence 455556787765432 223333322 3346789999999999999999999876654 2344544 122
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----hHHHHHccCCCC-CCCcEEEEEeCCh-hHH
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----QIEFLIGNLDWF-ASGSRILITARDK-QAL 194 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~~-~~~~~iliTsR~~-~~~ 194 (398)
+...+...+... ....+...+.+ .-+|+|||++... ..+.+...+... ..+..+|+|+... ...
T Consensus 177 ~~~~~~~~~~~~---------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 177 FTNDFVNALRNN---------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHHHcC---------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 233333333211 12223333332 2389999996321 122333332211 2345577777542 211
Q ss_pred H--------hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 195 I--------NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 195 ~--------~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
. .+.....+.+++.+.++-.+++...+.... ....++.++.+++.+.|+...+.-+...+
T Consensus 247 ~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l~~l 314 (405)
T TIGR00362 247 PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGALNRL 314 (405)
T ss_pred hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1 122345789999999999999998874322 23346889999999999988766554443
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=2.2e-06 Score=86.26 Aligned_cols=196 Identities=11% Similarity=0.080 Sum_probs=110.5
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-..++|.+..++.|..++..+ .-.+..+++||+|+||||+|+.+++.+-.......+..+. .+... ...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~-~C~~~-------~~~ 85 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ-ECIEN-------VNN 85 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh-HHHHh-------hcC
Confidence 4467899999999999999763 2356678999999999999999998753321100000000 00000 000
Q ss_pred HHHHh-cCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe-CChhHHH-
Q 015918 126 LSTLL-NDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITA-RDKQALI- 195 (398)
Q Consensus 126 ~~~l~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTs-R~~~~~~- 195 (398)
-.... ..... ......+..+...+ .+++-++|||+++.. .....|+..+-..+..+.+|++| ....+..
T Consensus 86 ~~Dvieidaas-n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 86 SLDIIEMDAAS-NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCcEEEEeccc-cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 00000 00000111222211 245569999999743 45666666655444455555444 3333332
Q ss_pred hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 196 NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 196 ~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
..+.+..+.+.+++.++..+.+...+...+ .....+.+..+++.++|.+.-+..+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234567899999999999998887652222 122346688899999998865544433
No 83
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=2.1e-06 Score=85.85 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=108.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechhhhhcCCHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~ 119 (398)
..-.+++|.+...+.|.+++..+ .-...++++|++|+||||+|+.+++.+...- +|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c-------------- 76 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC-------------- 76 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc--------------
Confidence 34467999999999999998763 2345678999999999999999998854221 11110
Q ss_pred HHHHHHHHHHhcC-CCCCCCCcc---chHHHHHhh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEe
Q 015918 120 DLRKELLSTLLND-GNMNKFPNI---GLNFQSKRL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITA 188 (398)
Q Consensus 120 ~~~~~i~~~l~~~-~~~~~~~~~---~~~~l~~~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTs 188 (398)
..+..+...-... ...+...+. .+..+...+ ..+.-++|||+++.. .....|+..+......+.+|++|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 0000000000000 000000000 111111111 234458999999744 34556666555444555555555
Q ss_pred CC-hhHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 015918 189 RD-KQALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKIL 252 (398)
Q Consensus 189 R~-~~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~l 252 (398)
.+ ..+.. ..+.+..+++.+++.++....+...+...+. ...++.+..+++.++|... ++..+
T Consensus 157 ~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 157 TEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 33332 2345678899999999999888776532221 2335678889999999775 44444
No 84
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=4.2e-06 Score=82.66 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=111.3
Q ss_pred cccCcccccchhHH--HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSRIE--EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~el~--~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ 120 (398)
.-+..++|-...+. .+.+...... .....++|+|++|+|||.|+..+++.....+ ..+.|+. ..+
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~-~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aee 354 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPA-KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEE 354 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCcc-ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHH
Confidence 44445667766533 3333333322 3345689999999999999999999876532 2345554 123
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh---Hh-HHHHHccCCCC-CCCcEEEEEeCChh---
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP---RQ-IEFLIGNLDWF-ASGSRILITARDKQ--- 192 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---~~-~~~l~~~l~~~-~~~~~iliTsR~~~--- 192 (398)
+..++...+... ..+.+...+.+ .-+|+|||++.. .. -+.|+..+... ..+..||+||....
T Consensus 355 f~~el~~al~~~---------~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 355 FTNEFINSIRDG---------KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHHHhc---------cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 333333322211 11223333333 247889999532 11 22333333221 33556888886531
Q ss_pred ------HHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 193 ------ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 193 ------~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
....+.....+.|.+.+.+.-.+++.+.+..... ...+++++.|++.+.++...|.-+...+
T Consensus 425 ~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l--~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 425 VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL--NAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222345678899999999999999987743332 3346889999999998887776655444
No 85
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.75 E-value=7.7e-07 Score=86.17 Aligned_cols=189 Identities=16% Similarity=0.107 Sum_probs=110.9
Q ss_pred cccCcccccchhHH--HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHH
Q 015918 45 ETENKLVGVDSRIE--EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 45 ~~~~~fvGR~~el~--~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 120 (398)
.-+..++|-...+. ...++.... +....++|+|++|+|||+|+..+++.+.+..+ .+.|++ . .+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~--~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----~------~~ 170 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNP--GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EK 170 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCc--CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----H------HH
Confidence 45555668666543 233333322 23567999999999999999999998766543 345544 1 23
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeC-ChhHH
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----QIEFLIGNLDW-FASGSRILITAR-DKQAL 194 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~-~~~~~~iliTsR-~~~~~ 194 (398)
+...+...+... ....+........-+|+|||++... .-..+...+.. ...+..+|+|+. .+...
T Consensus 171 f~~~~~~~~~~~---------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 171 FLNDLVDSMKEG---------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHHHhcc---------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 334443333211 1122233333345589999996321 11223322221 123446888774 33221
Q ss_pred H--------hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 195 I--------NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 195 ~--------~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
. .+.....+.+++.+.+.-.+++.+.+.... ....++.+..|++.+.|+...+.-+...+
T Consensus 242 ~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l 309 (440)
T PRK14088 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_pred HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence 1 123456788999999999999988763322 22346889999999999888777655444
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.72 E-value=1.8e-07 Score=97.60 Aligned_cols=175 Identities=15% Similarity=0.130 Sum_probs=96.9
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-C-----cceEEEeechhhhhcCCHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-F-----EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.+++||+++++++.++|... ..+-++++|++|+|||++|..++..+... - ...+|..+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~---~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l--------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR---TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL--------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc---ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH---------
Confidence 46899999999999999763 34566799999999999999999986432 1 133443321111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH---------hHHH-HHccCCCCCCCcEEEEEeCCh
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR---------QIEF-LIGNLDWFASGSRILITARDK 191 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---------~~~~-l~~~l~~~~~~~~iliTsR~~ 191 (398)
+. ......+.+......+.......+++|+||+++... +... |.+.+. ....++|.+|..+
T Consensus 247 ~a-------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ 317 (821)
T CHL00095 247 LA-------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLD 317 (821)
T ss_pred hc-------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHH
Confidence 10 000000111112222222223568899999995221 1122 222222 2345566666554
Q ss_pred hHH-------HhcCCCeeEEcCCCChhhhHHHHHHhhc--CCCCCCcchHHHHHHHHHHcC
Q 015918 192 QAL-------INCGVNKIYQIKELVHVDALKLLNQCAF--GRDHPDASYIELTHEAIKYAQ 243 (398)
Q Consensus 192 ~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~~~--~~~~~~~~~~~~~~~i~~~~~ 243 (398)
+.. ........+.++..+.++...+++.... .........++....+++.+.
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~ 378 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSD 378 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 331 1223567788999999998888764320 000111123455666666654
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=3.4e-06 Score=84.70 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=110.6
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc----------------------ce
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE----------------------GS 103 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~----------------------~~ 103 (398)
.-..++|.+...+.|.+++..+ .-...++++|+.|+||||+|+.+++.+..... .+
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 3467999999999999999763 23456889999999999999999987532110 00
Q ss_pred EEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCC
Q 015918 104 YFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASG 181 (398)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~ 181 (398)
..+. ........+ +.++..++... . ..+.+-++|||+++.. .....|...+......
T Consensus 93 ~~ld----~~~~~~vd~-Ir~li~~~~~~---------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 93 HELD----AASNNSVDD-IRNLIEQVRIP---------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred EEec----ccccCCHHH-HHHHHHHHhhC---------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 0000 000011111 11111111000 0 1234448899999743 4466666666554455
Q ss_pred cEEEEEe-CChhHHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 182 SRILITA-RDKQALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 182 ~~iliTs-R~~~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+.+|++| ....+.. ..+.+..+++.+++.++....+...+...+. ....+.+..+++.++|...-+....
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544 3333333 2346778999999999999999876633222 2234668899999999887554443
No 88
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=4.9e-06 Score=82.91 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=111.2
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-..++|.+...+.|.+++.... -.+..+++||+|+||||+|+.+++.+........- ++... ..+..
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~--~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~--------pC~~C-~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK--ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE--------PCNEC-EICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCcc-HHHHH
Confidence 345689999999999999997632 35667889999999999999999875322100000 00000 01111
Q ss_pred HHHHHhcCC-CCCCCCccchH---HHHHh-----hCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-h
Q 015918 125 LLSTLLNDG-NMNKFPNIGLN---FQSKR-----LTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-Q 192 (398)
Q Consensus 125 i~~~l~~~~-~~~~~~~~~~~---~l~~~-----l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~ 192 (398)
+.......- ..+......++ .+... ..++.-++|||+++.. .....|+..+......+.+|++|... .
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 111000000 00000001111 11111 1345668999999854 44666666555434454555544333 2
Q ss_pred HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 193 ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 193 ~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+.. ..+.+..+.+.+++.++..+.+...+...+. ....+.+..+++.++|.+..+....
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi--~i~~~al~~ia~~s~G~~R~al~~L 221 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGI--EYEDEALRLIARAAEGGMRDALSIL 221 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 2345678899999999999998876632222 2234668889999999887554333
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.71 E-value=2.6e-07 Score=87.62 Aligned_cols=183 Identities=15% Similarity=0.183 Sum_probs=102.9
Q ss_pred ccCcccccchhHHHHHHHhccCC----------CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL----------TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~----------~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
....+.|++.++++|.+.+.... -..++.++|+||+|+|||++|+.+++.+...| +...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~------ 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVV------ 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecc------
Confidence 44578999999999998774211 02356699999999999999999998865543 2210
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCCC--
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLDW-- 177 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~-- 177 (398)
..++....... ........+...-...+.+|+||+++... .+..++..+..
T Consensus 189 --~~~l~~~~~g~---------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 --GSELVRKYIGE---------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --hHHHHHHhhhH---------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 01111100000 00001111222223467899999986421 12222222211
Q ss_pred CCCCcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHH
Q 015918 178 FASGSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKI 251 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~ 251 (398)
...+..||+||....... .. .....+.++..+.++..+++..+......... -....+++.+.|.. ..|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCCHHHHHH
Confidence 124567777776542211 11 22457889999999999999887644332221 11567778887653 34444
Q ss_pred HH
Q 015918 252 LG 253 (398)
Q Consensus 252 l~ 253 (398)
++
T Consensus 335 l~ 336 (364)
T TIGR01242 335 IC 336 (364)
T ss_pred HH
Confidence 43
No 90
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=5.5e-06 Score=83.25 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=111.4
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceE-EEeechhhhhcCCHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~ 124 (398)
.-..++|.+...+.|..++.... -.+.++++|++|+||||+|+.+++.+........ ... +. .-..+..
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~-------Cg-~C~~C~~ 83 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP-------CG-KCELCRA 83 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC-------Cc-ccHHHHH
Confidence 34578999999999999987632 3467889999999999999999998643211000 000 00 0011111
Q ss_pred HHHHHhcCC-CCCCCCccchHHHHH---hh-----CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-h
Q 015918 125 LLSTLLNDG-NMNKFPNIGLNFQSK---RL-----TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-Q 192 (398)
Q Consensus 125 i~~~l~~~~-~~~~~~~~~~~~l~~---~l-----~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~ 192 (398)
+.......- ..+......++.++. .+ .++.-++|||+++.. .....|+..+........+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 111110000 000000111111111 11 234558999999854 44666666665444455555555433 2
Q ss_pred HHH-hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 193 ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 193 ~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
+.. ..+.+..+.+.+++.++....+...+..... ....+.+..+++.++|.+..+..+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 2345678889999999998888766532111 12346688999999998876654443
No 91
>PRK06620 hypothetical protein; Validated
Probab=98.67 E-value=6.5e-07 Score=78.00 Aligned_cols=169 Identities=11% Similarity=-0.019 Sum_probs=98.7
Q ss_pred cccCcccccchh--HHHHHHHhccCCCCC-ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSR--IEEILSLLGVGLTMD-TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~e--l~~l~~~L~~~~~~~-~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 121 (398)
..+..++|.... ...+.++......+. .+.+.|+||+|+|||+|+..+++... ..++.. . . .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~---~-~--~---- 78 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKD---I-F--F---- 78 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CEEcch---h-h--h----
Confidence 556677777443 333444443221011 26799999999999999998776542 122220 0 0 0
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCC-CCCcEEEEEeCChhH-------
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWF-ASGSRILITARDKQA------- 193 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~------- 193 (398)
.. .... ..-+++|||++..+. ..+...+... ..+..+|+|++.++.
T Consensus 79 ~~------------------------~~~~-~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L 132 (214)
T PRK06620 79 NE------------------------EILE-KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDL 132 (214)
T ss_pred ch------------------------hHHh-cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHH
Confidence 00 0011 223788999975432 2232222111 345678888875532
Q ss_pred HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 194 LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 194 ~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...+.....+++++++.++...++.+.+.... ....+++.+.+++++.|....+.-+...+
T Consensus 133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSISS--VTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred HHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 12223556899999999998888887763222 22346889999999988877765554443
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.66 E-value=7.9e-07 Score=92.85 Aligned_cols=148 Identities=15% Similarity=0.119 Sum_probs=86.2
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhh----cCC
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEE----TGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~----~~~ 117 (398)
.+++||+.+++++.+.|.. .....++++|++|+|||++|..++..+.... ...+|......... ...
T Consensus 178 ~~vigr~~ei~~~i~iL~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~ 254 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 254 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc---CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence 4699999999999999976 3345677999999999999999999865431 12333321211100 011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCChH----------hHHHHHccCCCCCCCcEEEE
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNHPR----------QIEFLIGNLDWFASGSRILI 186 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~----------~~~~l~~~l~~~~~~~~ili 186 (398)
+.+-+ ...+.... ...+++|+||+++... .-+.+.+.+. ....++|-
T Consensus 255 ~e~~l--------------------k~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Ig 312 (857)
T PRK10865 255 FEERL--------------------KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVG 312 (857)
T ss_pred hHHHH--------------------HHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEE
Confidence 11111 11222111 2468899999996432 1222333332 33455666
Q ss_pred EeCChhHH-------HhcCCCeeEEcCCCChhhhHHHHHHh
Q 015918 187 TARDKQAL-------INCGVNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 187 TsR~~~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
+|..++.. ...+....+.++..+.++...+++..
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 55544331 11234456777777888888887654
No 93
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.65 E-value=7e-07 Score=85.21 Aligned_cols=182 Identities=14% Similarity=0.168 Sum_probs=100.5
Q ss_pred cCcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 47 ENKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
...+.|++.+++++.+.+... ....++.++|+||+|+|||++|+.+++.....| +.+. .
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~----~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV----G---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE---EEee----h----
Confidence 346889999999999876321 113456799999999999999999998865432 1111 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------Hh---HHHHHccCCC--C
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQ---IEFLIGNLDW--F 178 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~---~~~l~~~l~~--~ 178 (398)
.++.. .... .........+...-...+.+|+||+++.. .. +..++..+.. .
T Consensus 199 --~~l~~----~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 --SELVQ----KFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred --HHHhH----hhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11110 0000 00000111122222356789999999643 11 1122222211 1
Q ss_pred CCCcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHH
Q 015918 179 ASGSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKIL 252 (398)
Q Consensus 179 ~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~l 252 (398)
..+..||.||....... .+ .....+.+++.+.++-.+++..+......... -....+++.+.|. +.-|..+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGASGADLKAI 344 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 23556777776542211 11 23457899999999999999887643322221 1156677777653 3444444
Q ss_pred H
Q 015918 253 G 253 (398)
Q Consensus 253 ~ 253 (398)
+
T Consensus 345 ~ 345 (389)
T PRK03992 345 C 345 (389)
T ss_pred H
Confidence 3
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.65 E-value=6.4e-07 Score=80.91 Aligned_cols=133 Identities=10% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
+....++++||+|+||||+|+.+++.+.... ....++... . .++. ..... .......+.+.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~----~----~~l~----~~~~g-----~~~~~~~~~~~ 102 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE----R----ADLV----GEYIG-----HTAQKTREVIK 102 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec----H----HHhh----hhhcc-----chHHHHHHHHH
Confidence 3456788999999999999999998753221 112222210 0 1111 11100 00000111121
Q ss_pred HhhCCceEEEEEeCCCCh----------HhHHHHHccCCCCCCCcEEEEEeCChhHHH-------hc-CCCeeEEcCCCC
Q 015918 148 KRLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILITARDKQALI-------NC-GVNKIYQIKELV 209 (398)
Q Consensus 148 ~~l~~~~~LlvlDd~~~~----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~-------~~-~~~~~~~l~~L~ 209 (398)
.. ...+|+||+++.. +.++.+...+........+++++....... .. .....+.+++++
T Consensus 103 ~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 103 KA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred hc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC
Confidence 11 2348999999742 234445554443334445555554322211 11 223568999999
Q ss_pred hhhhHHHHHHhhc
Q 015918 210 HVDALKLLNQCAF 222 (398)
Q Consensus 210 ~~e~~~Ll~~~~~ 222 (398)
.++..+++.+.+.
T Consensus 180 ~~el~~Il~~~~~ 192 (261)
T TIGR02881 180 VEELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 95
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.65 E-value=2.7e-06 Score=73.72 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.+.+++.|+|+-|+|||.+++.+...+.++-.+++++ ..+..+...+...++.++..... .........+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i-----~~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVI-----DKPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEe-----cCcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHH
Confidence 5667999999999999999996666665544334333 23355667777777777766221 1111122222222
Q ss_pred -----hCCce-EEEEEeCCCCh--Hh---HHHHHccCCCCCCCcEEEEEeCChhHHH---------hcCCCee-EEcCCC
Q 015918 150 -----LTRKK-VLIVFDDVNHP--RQ---IEFLIGNLDWFASGSRILITARDKQALI---------NCGVNKI-YQIKEL 208 (398)
Q Consensus 150 -----l~~~~-~LlvlDd~~~~--~~---~~~l~~~l~~~~~~~~iliTsR~~~~~~---------~~~~~~~-~~l~~L 208 (398)
.++++ ..+++|+++.. +. ++.|...-...+....|+.... +...+ ....... |+++|+
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCc
Confidence 24455 99999999642 22 3333222222222223333321 11111 1112333 899999
Q ss_pred ChhhhHHHHHHhhcCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 209 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 209 ~~~e~~~Ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
+.+++..+++.++.+.. ..+-..++....++..+.|.|..|+.++...
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999988774433 2333456788999999999999999887643
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.64 E-value=7.4e-07 Score=93.38 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=87.4
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhhcCCHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 121 (398)
..++||+.+++++.+.|.. .....++++|++|+|||+++..+++++.... ...+|.......
T Consensus 173 ~~~igr~~ei~~~~~~l~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l--------- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL--------- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH---------
Confidence 4699999999999999976 3345667899999999999999999865432 223333211111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCChH----------hHHHHHccCCCCCCCcEEEEEeCC
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNHPR----------QIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~----------~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
.. ...............+.... .+.+++|+||+++... ....+.+.+. .....+|.+|..
T Consensus 241 ~a-------~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~ 311 (852)
T TIGR03346 241 IA-------GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTL 311 (852)
T ss_pred hh-------cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcH
Confidence 00 00000011111112222221 2468999999996432 1122222221 234455555554
Q ss_pred hhHHH-------hcCCCeeEEcCCCChhhhHHHHHHh
Q 015918 191 KQALI-------NCGVNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 191 ~~~~~-------~~~~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
++... ..+....+.++..+.++...++...
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 43311 1235567889999999999988754
No 97
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=4.7e-06 Score=76.90 Aligned_cols=193 Identities=15% Similarity=0.097 Sum_probs=111.4
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc---------------cCcceEEEeechhh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR---------------RFEGSYFAHNVREA 112 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~---------------~f~~~~~~~~~~~~ 112 (398)
.+++|.+...+.+.+.+..+ .-.+..+++|+.|+||+++|..+++.+-. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 46899999999999999763 23578999999999999999999988532 23444554311000
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCCCcc---chHHHHHhhC-----CceEEEEEeCCCC--hHhHHHHHccCCCCCCCc
Q 015918 113 EETGKLADLRKELLSTLLNDGNMNKFPNI---GLNFQSKRLT-----RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGS 182 (398)
Q Consensus 113 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~~~l~-----~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~ 182 (398)
... ... .+.....+.... ..... .+..+...+. +.+-++|||+++. ......++..+-..+ .+
T Consensus 82 ~g~-~~~---~~~~~~~~~~~~--~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 82 QGK-LIT---ASEAEEAGLKRK--APPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred ccc-ccc---hhhhhhcccccc--ccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 000 000 000000000000 11111 2223333332 3456999999974 344556666665444 44
Q ss_pred EEEEEeCC-hhHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 183 RILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 183 ~iliTsR~-~~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
.+|++|.+ ..+.+. .+.+..+.+.+++.++..+.+...... . .. ......++..++|.|.....+..
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~-~-~~---~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE-E-IL---NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc-c-cc---hhHHHHHHHHcCCCHHHHHHHHH
Confidence 45544433 333332 346788999999999999999876421 1 11 11146788999999976654433
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.63 E-value=1.7e-06 Score=80.58 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=97.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-.+++|.+...+.+..++... ..+..++++|++|+|||++++.+++..... ..++. .+. .... ....
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~~~-~i~~ 86 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CRID-FVRN 86 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-ccHH-HHHH
Confidence 45578899999999999998753 345677779999999999999999876332 22333 111 1111 1111
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--H-hHHHHHccCCCCCCCcEEEEEeCChh-H-HHhcCC
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--R-QIEFLIGNLDWFASGSRILITARDKQ-A-LINCGV 199 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~-~~~~l~~~l~~~~~~~~iliTsR~~~-~-~~~~~~ 199 (398)
.+..+..... ....+-+||||+++.. . ....+...+.....++.+|+|+.... . ....+.
T Consensus 87 ~l~~~~~~~~---------------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFASTVS---------------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHhhc---------------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1111111000 1134558999999754 2 22223222333346677888886542 1 111234
Q ss_pred CeeEEcCCCChhhhHHHHHHhhcC-----CCCCCcchHHHHHHHHHHcCCChH
Q 015918 200 NKIYQIKELVHVDALKLLNQCAFG-----RDHPDASYIELTHEAIKYAQGVPI 247 (398)
Q Consensus 200 ~~~~~l~~L~~~e~~~Ll~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~Pl 247 (398)
...+.++..+.++..+++...... .....+...+....+++.+.|.-.
T Consensus 152 ~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 567788788888877665432100 001111223445666666665443
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.63 E-value=5.1e-06 Score=80.35 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=106.6
Q ss_pred cccCcccccchhHH--HHHHHhccCC---CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHH
Q 015918 45 ETENKLVGVDSRIE--EILSLLGVGL---TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 45 ~~~~~fvGR~~el~--~l~~~L~~~~---~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 119 (398)
.-+..++|-...+. .+.++..... ......+.|+|++|+|||+|+..+++.+......+.|+. . .
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----~------~ 178 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----S------E 178 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----H------H
Confidence 55556678877754 3444432111 023467899999999999999999998766555556655 1 2
Q ss_pred HHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----HhHHHHHccCCC-CCCCcEEEEEeCC-hhH
Q 015918 120 DLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARD-KQA 193 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----~~~~~l~~~l~~-~~~~~~iliTsR~-~~~ 193 (398)
.+...+...+... ..+.+...... .-+|+|||++.. ...+.+...+.. ...+..+|+||.. +..
T Consensus 179 ~f~~~~~~~l~~~---------~~~~f~~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 179 LFTEHLVSAIRSG---------EMQRFRQFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHHHHhcc---------hHHHHHHHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 2222333332210 11223333333 348889999532 112233332221 1234567777754 321
Q ss_pred H--------HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 015918 194 L--------INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 250 (398)
Q Consensus 194 ~--------~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~ 250 (398)
. ..+..+..+.+.+++.++...++.+.+.... ....++..+.++..+.++-..+.
T Consensus 249 l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl~~la~~~~~dir~L~ 311 (445)
T PRK12422 249 LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETALDFLIEALSSNVKSLL 311 (445)
T ss_pred HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHH
Confidence 1 1123457889999999999999988763322 23446778888888887764443
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.60 E-value=6.3e-07 Score=91.64 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=86.9
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhhhcCCHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.+++||+.+++++.+.|... ....++++|++|+|||++|+.+++.+.... .+.+|.. ++..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~---~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHHHH
Confidence 46999999999999998763 334567899999999999999998753331 2233322 11111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----------HhHHH-HHccCCCCCCCcEEEEEeCC
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----------RQIEF-LIGNLDWFASGSRILITARD 190 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~-l~~~l~~~~~~~~iliTsR~ 190 (398)
+ . ........+......+...-...+.+|+||+++.. .+... +.+.+. ....++|-+|..
T Consensus 254 l----a---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~ 324 (758)
T PRK11034 254 L----A---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTY 324 (758)
T ss_pred h----c---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCCh
Confidence 1 0 00000011111111222222345779999999632 11211 223322 234455555544
Q ss_pred hhHH-------HhcCCCeeEEcCCCChhhhHHHHHHh
Q 015918 191 KQAL-------INCGVNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 191 ~~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
++.. ...+....+.+++.+.+++.+++...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 4321 12235578999999999999999864
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.57 E-value=3.5e-06 Score=74.74 Aligned_cols=195 Identities=16% Similarity=0.094 Sum_probs=112.5
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc--cCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-.+++|.+..++.|...+.. ...+..+.+||+|.|||+.|+.+++.+-. -|++.+.-.+....+...-.+.-.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 4556799999999999999987 35678889999999999999999988543 244333311100000000000000
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCce-EEEEEeCCCCh--HhHHHHHccCCCCCCCcE-EEEEeCChh-HHHhc
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK-VLIVFDDVNHP--RQIEFLIGNLDWFASGSR-ILITARDKQ-ALINC 197 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~-iliTsR~~~-~~~~~ 197 (398)
.. +..+...... .... .-++ -+||||+++.. +.|..+...+...+...+ |+||+.-.. +.+..
T Consensus 110 k~-fakl~~~~~~----------~~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 110 KN-FAKLTVLLKR----------SDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred cC-HHHHhhcccc----------ccCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00 0111100000 0000 0122 48999999854 345555555544344444 445543221 22223
Q ss_pred CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 198 GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 198 ~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
+...-+..++|..++..+-++..+...+ .....+..+.|++.++|--.-...+.+.+
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~--v~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEG--VDIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4556788999999999988888763322 23446789999999998766544444443
No 102
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.54 E-value=2.5e-06 Score=77.77 Aligned_cols=166 Identities=19% Similarity=0.232 Sum_probs=104.2
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
..+.|.+|+.++..+...+......-+..+.|+|.+|+|||.+++++.+..... .+|++ +-...+...+...+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n----~~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLN----CVECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeee----hHHhccHHHHHHHH
Confidence 457799999999999999987652234556999999999999999999987444 68988 66677888888888
Q ss_pred HHHHh-cCCCCCCCCc--c----chHHHHH--hhC--CceEEEEEeCCCChHhHH-----H---HHccCCCCCCCcEEEE
Q 015918 126 LSTLL-NDGNMNKFPN--I----GLNFQSK--RLT--RKKVLIVFDDVNHPRQIE-----F---LIGNLDWFASGSRILI 186 (398)
Q Consensus 126 ~~~l~-~~~~~~~~~~--~----~~~~l~~--~l~--~~~~LlvlDd~~~~~~~~-----~---l~~~l~~~~~~~~ili 186 (398)
+.... ....++.... . ....+.+ ... ++.++|||||++...+.+ . +...++ .+...|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEEEE
Confidence 88774 2222211111 1 1111111 112 358999999997543322 2 222222 23343333
Q ss_pred EeCChhHHHh--cC--CCeeEEcCCCChhhhHHHHHHh
Q 015918 187 TARDKQALIN--CG--VNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 187 TsR~~~~~~~--~~--~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
..-..+-... .+ ....+..+.-+.+|...++.+-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322222221 12 2345678889999999998654
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.53 E-value=7.3e-06 Score=73.61 Aligned_cols=204 Identities=13% Similarity=0.064 Sum_probs=118.0
Q ss_pred ccCcccccch---hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc------ceEEEeechhhhhcC
Q 015918 46 TENKLVGVDS---RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETG 116 (398)
Q Consensus 46 ~~~~fvGR~~---el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~ 116 (398)
..+.+||-.. .++.|.+.+..+...+.+.+.|+|++|+|||++++++++.+...++ -++++. ..+.+
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p 107 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEP 107 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCC
Confidence 3455666654 4455666666554467788999999999999999999987543331 133333 55678
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCC-ceEEEEEeCCCCh-----HhHHHHH---ccCCCCCCCcEEEEE
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR-KKVLIVFDDVNHP-----RQIEFLI---GNLDWFASGSRILIT 187 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~-----~~~~~l~---~~l~~~~~~~~iliT 187 (398)
+...+...++..++.................+.++. +.=+||||++++. ..-+.++ ..+.+.-.-+.|.+-
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 889999999999987765433333333334444443 3449999999752 1222222 222211223334444
Q ss_pred eCChhHH-----HhcCCCeeEEcCCCChh-hhHHHHHHhh--cC-CCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 188 ARDKQAL-----INCGVNKIYQIKELVHV-DALKLLNQCA--FG-RDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 188 sR~~~~~-----~~~~~~~~~~l~~L~~~-e~~~Ll~~~~--~~-~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
|++-... ...+....+.++++..+ +...|+...- .+ .....-...+++..++..++|+.=-+..+.
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 4322111 11135567788887654 4445543321 11 111112346788999999999886665443
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=6.2e-06 Score=76.56 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=62.0
Q ss_pred eEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCc
Q 015918 154 KVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDA 229 (398)
Q Consensus 154 ~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~ 229 (398)
+-++|||+++ +......++..+-+.+.++.+|++|.+. .+.+. .+.+..+.+.+++.+++.+.+.... . ...
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~~~-- 182 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-ESD-- 182 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-cCC--
Confidence 3356789997 4455667777666555667777777655 33322 3466789999999999999997653 1 111
Q ss_pred chHHHHHHHHHHcCCChHHHHHH
Q 015918 230 SYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 230 ~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
.+.+..++..++|.|.....+
T Consensus 183 --~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 --ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --hHHHHHHHHHcCCCHHHHHHH
Confidence 233667788999999755443
No 105
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.51 E-value=3.1e-06 Score=85.23 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=40.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..-+.++|++..++.+.+.+.. +....++|+|++|+||||||+.+.+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3446799999999999887754 445679999999999999999998765
No 106
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.49 E-value=1.1e-05 Score=77.07 Aligned_cols=239 Identities=17% Similarity=0.107 Sum_probs=132.0
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhc
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN 131 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 131 (398)
.|..-+.++...+.. .+.+++|.||.++||||+++.+.+...+. .+++...........+ .+.+...
T Consensus 21 ~~~~~~~~l~~~~~~----~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~~~-- 87 (398)
T COG1373 21 ERRKLLPRLIKKLDL----RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLRAY-- 87 (398)
T ss_pred hHHhhhHHHHhhccc----CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHHHH--
Confidence 333445555555543 22299999999999999997777766555 5555421111111111 1111111
Q ss_pred CCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHh------cCCCeeEEc
Q 015918 132 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN------CGVNKIYQI 205 (398)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~------~~~~~~~~l 205 (398)
.... ..++..|+||+++....|......+....+. ++++|+.+...... .+....+.+
T Consensus 88 --------------~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 88 --------------IELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred --------------HHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 1111 1177899999999999988888777655555 78888766533221 235678899
Q ss_pred CCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHHHhccCChhhHHHHHHH
Q 015918 206 KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKI 285 (398)
Q Consensus 206 ~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~~~~~l~~~~~~~v~~~l~~ 285 (398)
.|||-.|-..+-.. ....... +..-.-.-.+||.|.++..-...-. ...... ..+..-+..
T Consensus 152 ~PlSF~Efl~~~~~-----~~~~~~~-~~~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~-------~~~~~Di~~ 212 (398)
T COG1373 152 YPLSFREFLKLKGE-----EIEPSKL-ELLFEKYLETGGFPESVKADLSEKK------LKEYLD-------TILKRDIIE 212 (398)
T ss_pred CCCCHHHHHhhccc-----ccchhHH-HHHHHHHHHhCCCcHHHhCcchhhH------HHHHHH-------HHHHHHHHH
Confidence 99998888765430 0000011 1122333457899987732211100 111110 111111111
Q ss_pred hHhcCc-hHHHHHHHHhhcCcCC-cChHHHHHHH-HhcCccccccHHHHhhccCee
Q 015918 286 SYDGLD-DKEKNIFLDIACFLVG-EDRDIVTKYL-NACEFFATSGIEVLVDKSLIT 338 (398)
Q Consensus 286 ~~~~L~-~~~~~~l~~la~~~~~-~~~~~l~~~~-~~~~~~~~~~l~~L~~~~Ll~ 338 (398)
.....+ ...++++..++...+. ++...+...+ +.+.......++.|.+..++.
T Consensus 213 ~~~~~~~~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~ 268 (398)
T COG1373 213 RGKIENADLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLF 268 (398)
T ss_pred HcCcccHHHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheE
Confidence 111111 3556666555555444 8999998888 455555667788888888776
No 107
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.48 E-value=4.3e-06 Score=81.43 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=87.9
Q ss_pred CcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechh-
Q 015918 48 NKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVRE- 111 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~- 111 (398)
..+.|.+.+++++.+.+... .-..++-++++||+|+|||++|+.+++.+...+ ....|+.....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 45788999999998876310 113456799999999999999999999876542 22334331100
Q ss_pred hhhc--CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHH-hhCCceEEEEEeCCCChH---------h-----HHHHHcc
Q 015918 112 AEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK-RLTRKKVLIVFDDVNHPR---------Q-----IEFLIGN 174 (398)
Q Consensus 112 ~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~~~---------~-----~~~l~~~ 174 (398)
.... ......+..+ .+.... ...+++++|+||+++..- + +..|+..
T Consensus 262 Ll~kyvGete~~ir~i-----------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 262 LLNKYVGETERQIRLI-----------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred hcccccchHHHHHHHH-----------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 0000 0000011111 111111 123578999999996321 1 1233333
Q ss_pred CCCC--CCCcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhh
Q 015918 175 LDWF--ASGSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 175 l~~~--~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
+... ..+..||.||..+.... .+ +....|++++.+.++..++|..++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3211 13444555554432211 11 234568999999999999998876
No 108
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.2e-05 Score=75.70 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=112.9
Q ss_pred cccCcccccchhHHHHHHHh--ccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLL--GVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L--~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
.-+..++|-...+..-...- .... .....+.|+|+.|.|||.|+..+++...+..+...++. . ...+..
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g-~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~ 155 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPG-GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFT 155 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccC-CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHH
Confidence 55666777776665533322 2222 35789999999999999999999999888877555544 2 123333
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC----hHhHHHHHccCCCC-CCCcEEEEEeCChh-----
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDKQ----- 192 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~----~~~~~~l~~~l~~~-~~~~~iliTsR~~~----- 192 (398)
.++...+... .++.++... .-=+++|||++. ...-+++...+... ..+..||+|++..+
T Consensus 156 ~~~v~a~~~~---------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 156 NDFVKALRDN---------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHHhh---------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 3333333221 222333333 222889999953 22233344443322 23447888885442
Q ss_pred ----HHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 193 ----ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 193 ----~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
....+..+..+.+.+.+.+.-..++.+.+..... ...+++...+++....+-.-+..+.
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~--~i~~ev~~~la~~~~~nvReLegaL 287 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGI--EIPDEVLEFLAKRLDRNVRELEGAL 287 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhccHHHHHHHH
Confidence 2222346688999999999999999886633222 2335677777777776665554443
No 109
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.44 E-value=1.2e-06 Score=70.11 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
|+|+||+|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999974
No 110
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.38 E-value=3.7e-05 Score=67.02 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=72.6
Q ss_pred cccCcccccchhHHHHHHHhcc--CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGV--GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~--~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-..++|-+.+.+.|.+.... .. .....++++|+.|+|||++++.+++.+..+.-..+-+. -..-.++.+++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~----k~~L~~l~~l~ 98 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS----KEDLGDLPELL 98 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC----HHHhccHHHHH
Confidence 5667899999999988775431 11 45677889999999999999999998777653333332 11112222222
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCC---ChHhHHHH---Hcc-CCCCCCCcEEEEEeCCh
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVN---HPRQIEFL---IGN-LDWFASGSRILITARDK 191 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l---~~~-l~~~~~~~~iliTsR~~ 191 (398)
..+ . -...+++|++||+. .......| +.. +...+.+..|.+||...
T Consensus 99 ~~l---------------------~--~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 99 DLL---------------------R--DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHH---------------------h--cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 111 1 13578999999982 23333333 322 22335566666777444
No 111
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.38 E-value=1.1e-05 Score=76.74 Aligned_cols=184 Identities=11% Similarity=0.137 Sum_probs=100.1
Q ss_pred ccCcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
.-.++.|-+...++|.+.+.-. .-..++.++++||+|+|||+||+.+++.....| +.+. .
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~----~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV----G--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h---
Confidence 3346889988888888765310 113567899999999999999999998764432 1111 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------H---hHHHHHccCCC--
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------R---QIEFLIGNLDW-- 177 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~-- 177 (398)
..+.. .... .......+.+.......|.+|+||+++.. . .+..++..+..
T Consensus 213 ---s~l~~----k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 ---SEFVQ----KYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred ---HHHHH----Hhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 01110 0000 00001122222333467899999998532 0 11222222221
Q ss_pred CCCCcEEEEEeCChhHH-Hh-c---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHH
Q 015918 178 FASGSRILITARDKQAL-IN-C---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKI 251 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~-~~-~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~ 251 (398)
...+..+|+||..+... +. . .....+.++..+.++-.++|..+......... -....+++.+.|. |.-|..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d---vd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE---VDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc---cCHHHHHHHcCCCCHHHHHH
Confidence 12456677777654322 21 1 23456888888888888888766532221111 1156677777654 444554
Q ss_pred HHH
Q 015918 252 LGR 254 (398)
Q Consensus 252 l~~ 254 (398)
++.
T Consensus 358 l~~ 360 (398)
T PTZ00454 358 ICQ 360 (398)
T ss_pred HHH
Confidence 443
No 112
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.37 E-value=2e-05 Score=71.91 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=70.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
..++++|++|+|||++|+.+++.+.... ....|+. .+ ..++ ...+... . .......+...
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~----~~~l----~~~~~g~----~-~~~~~~~~~~a- 120 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VT----RDDL----VGQYIGH----T-APKTKEILKRA- 120 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ec----HHHH----hHhhccc----c-hHHHHHHHHHc-
Confidence 4688999999999999998887754321 1112332 11 1111 1111111 0 00011112221
Q ss_pred CCceEEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCChhHHHhc--------CCCeeEEcCCCChh
Q 015918 151 TRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRILITARDKQALINC--------GVNKIYQIKELVHV 211 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~--------~~~~~~~l~~L~~~ 211 (398)
.+-+|+||+++.. +....+...+.....+.+||+++......... .....+.+++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 3358999999632 12344444444334566666666543221111 12467999999999
Q ss_pred hhHHHHHHhh
Q 015918 212 DALKLLNQCA 221 (398)
Q Consensus 212 e~~~Ll~~~~ 221 (398)
|..+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999998776
No 113
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=1.7e-05 Score=74.43 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=120.3
Q ss_pred cccCcccccchhHHHHHHHhccCCC-CCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT-MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~-~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 121 (398)
..++.++||+.|+..+..|+..... ...+.+-|.|.+|.|||.+...++.++..... ..+++. ...-.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHH
Confidence 4567899999999999999864322 56778999999999999999999888665543 346665 3333455666
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCC--ceEEEEEeCCCChHh--HHHHHccCCC-CCCCcEEEEEeCCh-----
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTR--KKVLIVFDDVNHPRQ--IEFLIGNLDW-FASGSRILITARDK----- 191 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~--~~~l~~~l~~-~~~~~~iliTsR~~----- 191 (398)
+..++..+......+..+......+..+..+ ..+|+|+|+.|.... -..+...+.+ .-+++++++..-..
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 6666666633332222222233344444332 478999999874331 1111111111 02344444332111
Q ss_pred -hHHHhc-----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 192 -QALINC-----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 192 -~~~~~~-----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...+.+ -....+..+|.+.++..+++..++.. ..........++.+++.+.|.-=-+..+...+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~-~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE-ESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc-ccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 111111 13467788999999999999988732 22222323345566666655544444443333
No 114
>CHL00181 cbbX CbbX; Provisional
Probab=98.37 E-value=4.7e-05 Score=69.49 Aligned_cols=131 Identities=11% Similarity=0.110 Sum_probs=71.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhcc-C-cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
...++++|++|+||||+|+.+++.+... + ....|+. .+ ..++ ........ ......+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~l----~~~~~g~~------~~~~~~~l~~ 120 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDDL----VGQYIGHT------APKTKEVLKK 120 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHHH----HHHHhccc------hHHHHHHHHH
Confidence 3458899999999999999999875432 1 1112332 11 1111 11111110 0011111111
Q ss_pred hCCceEEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEEEEeCChhHHH--------hcCCCeeEEcCCCCh
Q 015918 150 LTRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRILITARDKQALI--------NCGVNKIYQIKELVH 210 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~~~~iliTsR~~~~~~--------~~~~~~~~~l~~L~~ 210 (398)
. ..-+|+||+++.. +....+...+......+.||+++....... .......+.+++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 1 2349999999642 223444444433345566666665433211 112456799999999
Q ss_pred hhhHHHHHHhhc
Q 015918 211 VDALKLLNQCAF 222 (398)
Q Consensus 211 ~e~~~Ll~~~~~ 222 (398)
+|..+++...+.
T Consensus 199 ~el~~I~~~~l~ 210 (287)
T CHL00181 199 EELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999987763
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=98.34 E-value=1.7e-05 Score=79.90 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=100.2
Q ss_pred CcccccchhHHHHHHHh---ccCC------CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEEILSLL---GVGL------TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L---~~~~------~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
.+++|.++..+++.+.+ .... ...++.++++||+|+|||+||+.++...... |+. .+ .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is----~ 249 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS----G 249 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----H
Confidence 45778877766666654 2211 0235679999999999999999998875322 222 11 0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCCC--CCC
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLDW--FAS 180 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~--~~~ 180 (398)
.++... ... .........+.......|++|+|||++... .+..++..+.. ...
T Consensus 250 s~f~~~----~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVEM----FVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHH----hhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111100 000 000012223344446678999999996321 12233322221 123
Q ss_pred CcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 015918 181 GSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGR 254 (398)
Q Consensus 181 ~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~~ 254 (398)
+..||.+|....... .+ .....+.++..+.++-.+++..++..... ........+++.+.| .+.-|..++.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 455666665543222 11 23367888888999999999887743221 123346778888877 5555555543
No 116
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.8e-05 Score=76.79 Aligned_cols=193 Identities=15% Similarity=0.081 Sum_probs=117.0
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc-ceEEEeechhhhhcCCHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
=++++|.+...+.|...+..+. -...-..+|+.|+||||+|+-+++.+.-... ..-- | ..+. .+..+
T Consensus 15 F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP-C--~~C~-------~Ck~I 82 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP-C--GKCI-------SCKEI 82 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc-c--hhhh-------hhHhh
Confidence 3567999999999999997643 3455668999999999999999988533211 0000 0 0000 01111
Q ss_pred HHHH-hcCCCCCCCCccchHHHHHhh--------CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChh--
Q 015918 126 LSTL-LNDGNMNKFPNIGLNFQSKRL--------TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-- 192 (398)
Q Consensus 126 ~~~l-~~~~~~~~~~~~~~~~l~~~l--------~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~-- 192 (398)
...- ..--..+...+..++.++... .++.=+.|||+++- ...+..|+..+-.-+.....|+.|.++.
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 1110 000000011111333333322 34555999999984 4567888888776666666666666552
Q ss_pred HHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 193 ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 193 ~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
...-.+.++.+.+..++.++....+...+... .....++....+++..+|...-...+.
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E--~I~~e~~aL~~ia~~a~Gs~RDalslL 221 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKE--GINIEEDALSLIARAAEGSLRDALSLL 221 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhc--CCccCHHHHHHHHHHcCCChhhHHHHH
Confidence 22233567889999999999999998877332 223445778888888888766444433
No 117
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=6.2e-05 Score=70.27 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=88.0
Q ss_pred cccc-cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc---------------------CcceEEE
Q 015918 49 KLVG-VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFA 106 (398)
Q Consensus 49 ~fvG-R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~---------------------f~~~~~~ 106 (398)
.++| -+..++.|...+..+ .-+...+++||+|+||||+|..+++.+-.. ++...++
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 3556 666777788877653 245667999999999999999999885322 1112222
Q ss_pred eechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEE
Q 015918 107 HNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRI 184 (398)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~i 184 (398)
... .......++ .++...+... -..+.+-++|||+++. ......|+..+-..+..+.+
T Consensus 84 ~~~---~~~i~id~i-r~l~~~~~~~----------------~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 84 APD---GQSIKKDQI-RYLKEEFSKS----------------GVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred ccc---cccCCHHHH-HHHHHHHhhC----------------CcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 100 000011111 0111111000 0123445899999974 34456676666655667767
Q ss_pred EEEeCCh-hHHH-hcCCCeeEEcCCCChhhhHHHHHHh
Q 015918 185 LITARDK-QALI-NCGVNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 185 liTsR~~-~~~~-~~~~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
|++|.+. .+.+ ..+.+..+++.+++.++..+.+...
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7776554 2222 2346788999999999998888653
No 118
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=9.3e-05 Score=68.21 Aligned_cols=181 Identities=17% Similarity=0.132 Sum_probs=96.9
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechh---hhhcCCHHHHHHHHHHHHhcCC
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE---AEETGKLADLRKELLSTLLNDG 133 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l~~~~ 133 (398)
.+.+.+.+..+ .-+..++++|+.|+||+++|..+++.+--.-+...-.+..+. ....+++.-+. .....
T Consensus 13 ~~~l~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p~~ 84 (319)
T PRK08769 13 YDQTVAALDAG--RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIPNR 84 (319)
T ss_pred HHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------cCCCc
Confidence 34455555442 245578899999999999999999874322110000000000 00000000000 00000
Q ss_pred CCCC-CCccchHHHHH---hh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCC
Q 015918 134 NMNK-FPNIGLNFQSK---RL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVN 200 (398)
Q Consensus 134 ~~~~-~~~~~~~~l~~---~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~ 200 (398)
.... .....++.++. .+ .++.-++|||+++. ......++..+-+-+.++.+|++|... .+.+. .+.+
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC 164 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC 164 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh
Confidence 0000 01122333322 22 23455999999984 445666766665555677666666543 33333 2467
Q ss_pred eeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 201 KIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 201 ~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
..+.+.+++.+++.+.+.... .. +..+..++..++|.|.....+.
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 889999999999998886531 11 1226678999999998654433
No 119
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=8.7e-05 Score=68.53 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=96.4
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcC---CC
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND---GN 134 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~---~~ 134 (398)
+.|.+.+..+ .-.....++|+.|+||+++|..+++.+--.-+...--| ... ..+..+....... -.
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~C-----g~C----~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPC-----GQC----HSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC-----CCC----HHHHHHhcCCCCCEEEEc
Confidence 4455555542 23567779999999999999999988532211000000 000 0000100000000 00
Q ss_pred CCCCCccchHHHH---Hhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCCee
Q 015918 135 MNKFPNIGLNFQS---KRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKI 202 (398)
Q Consensus 135 ~~~~~~~~~~~l~---~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~ 202 (398)
+.......++.++ ..+ .++.=++|||+++. ......++..+-+-++...+|++|.++ .+.+. .+.+..
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0000011222222 222 23455888999984 445667777776656677677666654 33333 346788
Q ss_pred EEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 203 YQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 203 ~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
+.+.+++.+++.+.+.... .. . ...+..++..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~~-~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS-SA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh-cc---C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999999887653 11 1 123667788999999633
No 120
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.3e-06 Score=74.59 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhc----cCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISR----RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
.+++.++||||.|||+||+.+++++.- +|....-+. . +..+++..++..-+ ..-....+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsESg------KlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSESG------KLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhhh------hHHHHHHHHHH
Confidence 488999999999999999999998543 333333332 1 22333333332221 22222445555
Q ss_pred HhhCCce--EEEEEeCCCC
Q 015918 148 KRLTRKK--VLIVFDDVNH 164 (398)
Q Consensus 148 ~~l~~~~--~LlvlDd~~~ 164 (398)
..+.++. +++.||+|+.
T Consensus 243 ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHhCCCcEEEEEeHHHHH
Confidence 5555544 5777999853
No 121
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.25 E-value=3.4e-05 Score=76.35 Aligned_cols=183 Identities=13% Similarity=0.080 Sum_probs=96.7
Q ss_pred cCcccccchhHHHHHHHhc---cC------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 47 ENKLVGVDSRIEEILSLLG---VG------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~---~~------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
-.+++|-+...+++.+++. .. ....++-++++||+|+|||+||+.++....-. |+. .+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~----i~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS----IS---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eee----cc----
Confidence 3467787776666555442 10 11345679999999999999999998775332 222 10
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCCC--CC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLDW--FA 179 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~--~~ 179 (398)
..++.. .... .........+.......|.+|+|||++... .+..++..+.. ..
T Consensus 121 ~~~~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 GSDFVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHHHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 011111 0000 000012222333334578899999995321 11222222221 12
Q ss_pred CCcEEEEEeCChh-HHHhc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHH
Q 015918 180 SGSRILITARDKQ-ALINC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILG 253 (398)
Q Consensus 180 ~~~~iliTsR~~~-~~~~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~ 253 (398)
.+..||.||..+. +.+.+ .....+.++..+.++-.+++..++....... ......+++.+.| .+--|..++
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence 3445555665442 11111 2345788888888888888887763322211 1225678888877 445565554
Q ss_pred H
Q 015918 254 R 254 (398)
Q Consensus 254 ~ 254 (398)
+
T Consensus 269 ~ 269 (495)
T TIGR01241 269 N 269 (495)
T ss_pred H
Confidence 3
No 122
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.23 E-value=1.5e-05 Score=77.62 Aligned_cols=175 Identities=14% Similarity=0.066 Sum_probs=89.7
Q ss_pred CcccccchhHHHHHHHhc-------c-CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHH
Q 015918 48 NKLVGVDSRIEEILSLLG-------V-GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~-------~-~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 119 (398)
+++.|.+...+.+.+... . +. ..++.++++||+|+|||.+|+.+++.+.-.| +.....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~--------- 293 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVG--------- 293 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhH---------
Confidence 456776655544443211 0 11 4567899999999999999999998864332 111100
Q ss_pred HHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--------------hHHHHHccCCCCCCCcEEE
Q 015918 120 DLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--------------QIEFLIGNLDWFASGSRIL 185 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--------------~~~~l~~~l~~~~~~~~il 185 (398)
.+. ... .+ ..+......+...-...|++|+||+++..- .+..++..+.....+..||
T Consensus 294 ~l~----~~~----vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 294 KLF----GGI----VG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred Hhc----ccc----cC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 000 000 00 000001122222223578999999996310 0112222222223445566
Q ss_pred EEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 186 ITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 186 iTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
.||......+ .+ .....+.++.-+.++-.++|..++.... +..........+++.+.|..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCC
Confidence 6775543211 11 2345677888888888888887763321 11111122566777776544
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.21 E-value=4.2e-05 Score=79.91 Aligned_cols=55 Identities=22% Similarity=0.227 Sum_probs=42.3
Q ss_pred cccCcccccchhHHHHHHHhccC----CC--CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG----LT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~----~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.-...++|.+..++.+.+.+... .+ ....+++++||+|+|||.||+.+++.+...
T Consensus 563 ~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 563 RLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred HhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 34467999999999999987421 11 223468999999999999999999887544
No 124
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.20 E-value=3.2e-05 Score=74.30 Aligned_cols=47 Identities=19% Similarity=0.100 Sum_probs=40.2
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..|+||++.++.+...+..+ ..++|.|++|+|||+||+.+.......
T Consensus 20 ~~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~~~~ 66 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQNA 66 (498)
T ss_pred hhccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHhccc
Confidence 44999999999999988654 378899999999999999999876543
No 125
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.20 E-value=0.0001 Score=66.62 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++.+..++.. .+.+.|.|++|+|||+||+.+++.+.
T Consensus 11 ~~~~l~~l~~-----g~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 11 TSRALRYLKS-----GYPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred HHHHHHHHhc-----CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3444455533 34678999999999999999998653
No 126
>PRK10536 hypothetical protein; Provisional
Probab=98.19 E-value=1.2e-05 Score=70.90 Aligned_cols=137 Identities=12% Similarity=0.204 Sum_probs=77.3
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH-h-hccCcceEEEeechhhhh-----cCC
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK-I-SRRFEGSYFAHNVREAEE-----TGK 117 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~ 117 (398)
.+...+.+|......+..++.. ...++++|++|+|||+||..++.. + .+.|..++.....-.... +.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3446788899999999998864 249999999999999999999885 3 444554444321111110 222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHH------------HHHhhCCce---EEEEEeCCCCh--HhHHHHHccCCCCCC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNF------------QSKRLTRKK---VLIVFDDVNHP--RQIEFLIGNLDWFAS 180 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~------------l~~~l~~~~---~LlvlDd~~~~--~~~~~l~~~l~~~~~ 180 (398)
..+-+..++..+...... -......+. -..++++++ .+||+|++.+. .+...++..+ +.
T Consensus 127 ~~eK~~p~~~pi~D~L~~-~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVR-RLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHH-HhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CC
Confidence 222222222222111000 000000110 112445554 49999999754 4455555443 68
Q ss_pred CcEEEEEeCC
Q 015918 181 GSRILITARD 190 (398)
Q Consensus 181 ~~~iliTsR~ 190 (398)
++++|++.-.
T Consensus 203 ~sk~v~~GD~ 212 (262)
T PRK10536 203 NVTVIVNGDI 212 (262)
T ss_pred CCEEEEeCCh
Confidence 9999988753
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=9.7e-05 Score=68.82 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechh---hhhcCCHHHHHHHHHHHH
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVRE---AEETGKLADLRKELLSTL 129 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l 129 (398)
+++.+.+..+ .-.....++|+.|+||+++|..++..+--.- +|.. |..+. ....+++..+
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~--C~sC~~~~~g~HPD~~~i-------- 79 (334)
T PRK07993 12 EQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGH--CRGCQLMQAGTHPDYYTL-------- 79 (334)
T ss_pred HHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC--CHHHHHHHcCCCCCEEEE--------
Confidence 4555555442 3456788999999999999999998853211 1110 00000 0000000000
Q ss_pred hcCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCC
Q 015918 130 LNDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVN 200 (398)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~ 200 (398)
..........-..+..+.+.+ .+..=++|||+++. ......|+..+-+-+.+..+|++|.++ .+.+. .+.+
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000000001111222222222 23455999999974 455677777776656666666666554 34433 3456
Q ss_pred eeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 201 KIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 201 ~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
..+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|...
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~--~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T--MS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C--CC----HHHHHHHHHHcCCCHHHH
Confidence 788999999999998886542 1 11 233667889999999643
No 128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=3.9e-06 Score=74.57 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCc-c-----c
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-I-----G 142 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~-----~ 142 (398)
.....++|.|++|+|||||++.+++.... +|+..+|+....+ ......+++..+...+........... . .
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 45578899999999999999999988654 5777778773322 124677777777333322211111100 0 1
Q ss_pred hHHHHH-hhCCceEEEEEeCCCCh
Q 015918 143 LNFQSK-RLTRKKVLIVFDDVNHP 165 (398)
Q Consensus 143 ~~~l~~-~l~~~~~LlvlDd~~~~ 165 (398)
...... ...++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 111111 23578999999999543
No 129
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.00058 Score=63.58 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=60.2
Q ss_pred ceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCC-hhHHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCC
Q 015918 153 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 228 (398)
Q Consensus 153 ~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR~-~~~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~ 228 (398)
+.=++|||+++ +......|+..+-+-.++..+|++|.+ ..+.+. .+.+..+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 44489999997 445567777777665666666655544 444433 3467889999999999999887642 111
Q ss_pred cchHHHHHHHHHHcCCChHHHHHH
Q 015918 229 ASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 229 ~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
...++..++|.|.....+
T Consensus 208 ------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ------HHHHHHHcCCCHHHHHHH
Confidence 233577889999755433
No 130
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.18 E-value=0.00014 Score=67.90 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=37.4
Q ss_pred chhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 54 DSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+.-.+.|.+.+.......+.+|+|.|+-|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4455667777776543577899999999999999999999998777
No 131
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.18 E-value=5.3e-05 Score=63.04 Aligned_cols=135 Identities=17% Similarity=0.213 Sum_probs=74.4
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc--------------------CcceEEEeechh
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR--------------------FEGSYFAHNVRE 111 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~ 111 (398)
|-+...+.|.+.+..+ .-+..++++|+.|+||+++|..+++.+-.. .+...|+.
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~---- 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK---- 74 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE----
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe----
Confidence 4566777777777653 245668999999999999999999874322 23333332
Q ss_pred hhh---cCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEE
Q 015918 112 AEE---TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILI 186 (398)
Q Consensus 112 ~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~ili 186 (398)
... .....++. .+...+.... ..+..=++|||+++. .+....|+..+-..+..+.+|+
T Consensus 75 ~~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 75 PDKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 111 11111111 2222211111 123455999999984 4455666666555567888888
Q ss_pred EeCChh-H-HHhcCCCeeEEcCCCC
Q 015918 187 TARDKQ-A-LINCGVNKIYQIKELV 209 (398)
Q Consensus 187 TsR~~~-~-~~~~~~~~~~~l~~L~ 209 (398)
+|.+.. + .+-.+....+.+.++|
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 887653 2 2233567778887765
No 132
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.17 E-value=7.6e-06 Score=65.95 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.+.|+|++|+||||+++.+++.+.......+++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 357899999999999999999998776653455554
No 133
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.4e-05 Score=68.34 Aligned_cols=172 Identities=13% Similarity=0.154 Sum_probs=91.8
Q ss_pred cccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 49 KLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
.+=|-++.+++|.+.+.- .....++-|++|||||+|||-||+.++++.... |+...+
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg-------- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG-------- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc--------
Confidence 456788888888887642 112567889999999999999999999885444 333111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCC-------------hHhHHHHHccCC---C--CC
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNH-------------PRQIEFLIGNLD---W--FA 179 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~-------------~~~~~~l~~~l~---~--~~ 179 (398)
.++.. ....++ ...+..+.... ...|++|++|+++. .+.-+.++..+. - ..
T Consensus 219 SElVq----KYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 SELVQ----KYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHH----HHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 11111 111111 11222222222 45689999999952 111222222222 1 14
Q ss_pred CCcEEEEEeCChhHHH-h-c---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 180 SGSRILITARDKQALI-N-C---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 180 ~~~~iliTsR~~~~~~-~-~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
.+.+||..|...+... . + .....|+++.-+.+.=.++|.-+...-...... -.+.+++.|.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv---d~e~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV---DLELLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc---CHHHHHHhcCCCc
Confidence 5678887664442221 1 1 233456776444444456666555332222211 1667777777654
No 134
>PRK08116 hypothetical protein; Validated
Probab=98.16 E-value=2.7e-05 Score=70.39 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
...+.|+|++|+|||.||..+++.+..+...++|++ ..+++..+........ ......+...+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~ 177 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLV 177 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhc
Confidence 346899999999999999999999876644455554 2333444433332111 111222334444
Q ss_pred CceEEEEEeCCC--ChHh--HHHHHccCCC-CCCCcEEEEEeCCh
Q 015918 152 RKKVLIVFDDVN--HPRQ--IEFLIGNLDW-FASGSRILITARDK 191 (398)
Q Consensus 152 ~~~~LlvlDd~~--~~~~--~~~l~~~l~~-~~~~~~iliTsR~~ 191 (398)
+-+ ||||||+. .... ...+...+.. ...+..+|+||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999993 2222 2223332221 12445688888643
No 135
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.15 E-value=3.2e-05 Score=74.29 Aligned_cols=181 Identities=13% Similarity=0.153 Sum_probs=98.5
Q ss_pred CcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
.++.|.+.++++|.+.+.-. .-..++.++|+||+|+|||++|+.+++.....| +.+. .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~----~----- 250 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF---LRVV----G----- 250 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEe----c-----
Confidence 45789999999998877421 013456788999999999999999999875543 1111 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCCC--CC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLDW--FA 179 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~--~~ 179 (398)
.++.. .... .........+.......+++|+||+++... .+..++..+.. ..
T Consensus 251 -seL~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 251 -SELIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -chhhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 00000 0000 000001112222234578899999974210 11122222211 12
Q ss_pred CCcEEEEEeCChhHHHh-c----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHH
Q 015918 180 SGSRILITARDKQALIN-C----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILG 253 (398)
Q Consensus 180 ~~~~iliTsR~~~~~~~-~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~l~ 253 (398)
.+..||++|........ + .....+.+++.+.++-.++|..+......... -....++..+.|. +..|..++
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d---vdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED---VDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC---cCHHHHHHhcCCCCHHHHHHHH
Confidence 35667777765433222 1 23457889999999999999877633221111 1145566666553 33354444
No 136
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=4.2e-05 Score=76.64 Aligned_cols=199 Identities=14% Similarity=0.084 Sum_probs=104.6
Q ss_pred cccCcccccchhHHHHHHHhccCCC--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechh--hhhcC----
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE--AEETG---- 116 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~--~~~~~---- 116 (398)
..-.+++|.+..++.+..++..... ...++++|+||+|+||||+++.++..+... ..-|...... .+...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~--~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQ--VQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH--HHHHhhhhhhcccccccccch
Confidence 5667899999999999999875321 334679999999999999999999875322 2223210000 00000
Q ss_pred ----------CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-----HhHHHHHc-cCCCCCC
Q 015918 117 ----------KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-----RQIEFLIG-NLDWFAS 180 (398)
Q Consensus 117 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----~~~~~l~~-~l~~~~~ 180 (398)
.-.+.+..++......... .-....+++.+|+||++.+. ..+..++. .......
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~----------~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~ 228 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQM----------LGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR 228 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcc----------cccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC
Confidence 0011111111111000000 00001346789999999431 23444433 2222222
Q ss_pred CcEEEEEeCChh---------HH-------Hhc--CCCeeEEcCCCChhhhHHHHHHhhcCCCC---CC--cchHHHHHH
Q 015918 181 GSRILITARDKQ---------AL-------INC--GVNKIYQIKELVHVDALKLLNQCAFGRDH---PD--ASYIELTHE 237 (398)
Q Consensus 181 ~~~iliTsR~~~---------~~-------~~~--~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~---~~--~~~~~~~~~ 237 (398)
-..|+++|-.+. .. ... .....|.+.|++..+..+.+.+.+..... .. -...+.+..
T Consensus 229 ~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~ 308 (637)
T TIGR00602 229 CPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVEL 308 (637)
T ss_pred ceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHH
Confidence 333444442111 00 111 13456899999999988887776532111 00 012456788
Q ss_pred HHHHcCCChHHHHHHHHH
Q 015918 238 AIKYAQGVPIALKILGRF 255 (398)
Q Consensus 238 i~~~~~g~Pl~i~~l~~~ 255 (398)
++..+.|--.......+.
T Consensus 309 I~~~s~GDiRsAIn~LQf 326 (637)
T TIGR00602 309 LCQGCSGDIRSAINSLQF 326 (637)
T ss_pred HHHhCCChHHHHHHHHHH
Confidence 888888876655544444
No 137
>PRK08181 transposase; Validated
Probab=98.13 E-value=2.3e-05 Score=70.51 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...++|+|++|+|||.|+..+++....+...+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 346899999999999999999998766554556654
No 138
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.00068 Score=62.49 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=95.1
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcC----C
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND----G 133 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~----~ 133 (398)
+.+.+.+..+ .-+..+.++|+.|+||+++|..+++.+--.-.... -+ ... ..+..+....... .
T Consensus 13 ~~l~~~~~~~--rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-~C-----g~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 13 QNWKAGLDAG--RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-AC-----GFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-CC-----CCC----HHHHHHHcCCCCCEEEEe
Confidence 3455555432 34567889999999999999999987422111000 00 000 0000000000000 0
Q ss_pred CCCCCCccchHHH---HHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCCe
Q 015918 134 NMNKFPNIGLNFQ---SKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNK 201 (398)
Q Consensus 134 ~~~~~~~~~~~~l---~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~ 201 (398)
.........++.+ ...+ .+..=++|||+++. ......++..+-+-+++..+|++|.++ .+.+. .+.+.
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 0000001112222 2222 23345899999974 445666777766656666666666544 34333 35678
Q ss_pred eEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 202 IYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 202 ~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
.+.+++++.+++.+.+.... .. ....++..++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~----~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG----IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC----Cc------hHHHHHHHcCCCHHHHHHH
Confidence 89999999999999886542 11 1346788999999866544
No 139
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.11 E-value=0.00042 Score=71.99 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=96.5
Q ss_pred CcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
..+.|-+...+.|.+.+.- .....++.++++||+|+|||++|+.+++.....| +.+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~----~----- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR----G----- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe----h-----
Confidence 3466777777777665531 0113456689999999999999999998865332 1111 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--------------hHHHHHccCCC--CCCC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--------------QIEFLIGNLDW--FASG 181 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--------------~~~~l~~~l~~--~~~~ 181 (398)
.++ +..... ..+......+...-...+++|+||+++... ....++..+.. ...+
T Consensus 521 -~~l----~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 -PEI----LSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -HHH----hhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111 110000 001111222222334578999999985321 12223333321 1234
Q ss_pred cEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHH
Q 015918 182 SRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKILGR 254 (398)
Q Consensus 182 ~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~l~~ 254 (398)
..||.||..+.... .. .....+.+++.+.++-.++|..+......... .....+++.|.|.- ..|..+++
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCCHHHHHHHHH
Confidence 55565665443221 11 23467888888988888888766532221111 11567788887654 44554443
No 140
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.10 E-value=0.00021 Score=64.46 Aligned_cols=185 Identities=18% Similarity=0.097 Sum_probs=105.9
Q ss_pred HHHHHHHHhccccccccCcccccchhHHHHHHHhccC-CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeec
Q 015918 31 EIVSEVLERLDDTFETENKLVGVDSRIEEILSLLGVG-LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV 109 (398)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~fvGR~~el~~l~~~L~~~-~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~ 109 (398)
.|..-+.+++.. +-..++|-.++.+++..++... -.+....+.|.||.|+|||+|......+ .+.+.-.+.++.+
T Consensus 10 siqr~l~~rl~~---~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~L 85 (408)
T KOG2228|consen 10 SIQRILRERLCG---PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRL 85 (408)
T ss_pred HHHHHHHHHhcC---CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEE
Confidence 345555556555 4567999999999999998521 1145567889999999999999988877 4555445555433
Q ss_pred hhhhhcCCHHHHHHHHHHHHh----cCCCCCCCCccchHHHHHhhC------CceEEEEEeCCCCh--HhHHH----HHc
Q 015918 110 REAEETGKLADLRKELLSTLL----NDGNMNKFPNIGLNFQSKRLT------RKKVLIVFDDVNHP--RQIEF----LIG 173 (398)
Q Consensus 110 ~~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDd~~~~--~~~~~----l~~ 173 (398)
.+.-.. -.-.+..|..++. ........-......+...++ +-++++|+|++|-- ..-+. ++.
T Consensus 86 ng~~~~--dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfD 163 (408)
T KOG2228|consen 86 NGELQT--DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFD 163 (408)
T ss_pred Cccchh--hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHH
Confidence 322211 1112333444432 221111111113334444442 24689999998621 11111 222
Q ss_pred cCC-CCCCCcEEEEEeCChhHH-------HhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 174 NLD-WFASGSRILITARDKQAL-------INCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 174 ~l~-~~~~~~~iliTsR~~~~~-------~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
... ...|-|-+-+|||..-.. ...++...+-+++++-++..++++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 211 224555666888875222 222344566677889999999998876
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.08 E-value=7.1e-05 Score=77.69 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=92.5
Q ss_pred CcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
+.+.|.+..++.+.+++... .-...+.++|+||+|+|||+||+.+++.....| +.+.. .......
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~-~~i~~~~- 252 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING-PEIMSKY- 252 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec-HHHhccc-
Confidence 45889999999998876421 003456789999999999999999998764332 22220 0000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHccCCCC-CCCcE
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIGNLDWF-ASGSR 183 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~~-~~~~~ 183 (398)
.. .........+.......+.+|+||+++.. .....+...+... ..+..
T Consensus 253 ----------------~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 253 ----------------YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ----------------cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 00 00000112222233456789999998532 1122233333221 22223
Q ss_pred EEE-EeCChh-HHHhc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 184 ILI-TARDKQ-ALINC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 184 ili-TsR~~~-~~~~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
+++ +|..+. +.+.+ .....+.++..+.++-.+++........... ......+++.+.|..
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 343 443332 11111 1235677888888888888876542221111 122667778887754
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.08 E-value=0.00016 Score=75.82 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=41.9
Q ss_pred cccCcccccchhHHHHHHHhccC----CC-C-CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG----LT-M-DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~----~~-~-~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.-...++|.+..++.+...+... .+ + ....++++||+|+|||+||+.+++.+...
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 34557999999999999987531 11 1 22478899999999999999999876543
No 143
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.08 E-value=8.1e-05 Score=73.96 Aligned_cols=47 Identities=26% Similarity=0.353 Sum_probs=39.0
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
-++++|.+..++.+...+.. +....++|+|++|+|||++|+.+.+..
T Consensus 64 f~~iiGqs~~i~~l~~al~~---~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCG---PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999987754 345678899999999999999987653
No 144
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.06 E-value=8.4e-06 Score=75.91 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCcc-------
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI------- 141 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~------- 141 (398)
++.+..+|.|++|+|||||++++++.+.. +|+..+|+...++ ......++...+...+.... .+.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~ 243 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEM 243 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHH
Confidence 45567889999999999999999998655 5888889885433 12355666666653222221 1122222
Q ss_pred chHHHHHh-hCCceEEEEEeCCCC
Q 015918 142 GLNFQSKR-LTRKKVLIVFDDVNH 164 (398)
Q Consensus 142 ~~~~l~~~-l~~~~~LlvlDd~~~ 164 (398)
........ ..+++++|++|++..
T Consensus 244 ~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 244 VIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHcCCCEEEEEEChHH
Confidence 11111111 367899999999953
No 145
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00034 Score=66.75 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC--CHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
.+...+++.||+|+|||+||.+++.. ..|+++-.++ ...-. +-..-+..+ .....
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~i-----------------~k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAHI-----------------KKIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHHH-----------------HHHHH
Confidence 56678899999999999999999876 7888766654 11100 111111111 11122
Q ss_pred HhhCCceEEEEEeCCCChHh------------HHHHHccCCCCC-CCcE--EEEEeCChhHHHhcC----CCeeEEcCCC
Q 015918 148 KRLTRKKVLIVFDDVNHPRQ------------IEFLIGNLDWFA-SGSR--ILITARDKQALINCG----VNKIYQIKEL 208 (398)
Q Consensus 148 ~~l~~~~~LlvlDd~~~~~~------------~~~l~~~l~~~~-~~~~--iliTsR~~~~~~~~~----~~~~~~l~~L 208 (398)
..-+..-.+||+||++..-+ ++.++-.+...+ .+.+ |+-||....+...+. ....+.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 22345567999999954322 333333333222 2333 344565566666553 4567899999
Q ss_pred Ch-hhhHHHHHHh
Q 015918 209 VH-VDALKLLNQC 220 (398)
Q Consensus 209 ~~-~e~~~Ll~~~ 220 (398)
+. ++..+.+...
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 87 6777777654
No 146
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.05 E-value=0.0005 Score=63.10 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=39.5
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
..++.|+=.......+..++.. .+.|.|.|++|+||||+++.+++.+.-.+
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 4455566666677778777753 24699999999999999999999986554
No 147
>PRK12377 putative replication protein; Provisional
Probab=98.04 E-value=4.5e-05 Score=67.75 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+...+.++|++|+|||+||..+++.+..+...+.|+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3467899999999999999999999877655566665
No 148
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.00015 Score=67.76 Aligned_cols=143 Identities=16% Similarity=0.134 Sum_probs=82.9
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC---------------------cceEEEe
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF---------------------EGSYFAH 107 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f---------------------~~~~~~~ 107 (398)
.++|-+.....+..+..... ..+..+.++||+|+||||+|..+++.+.... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 46777788888888887443 3444699999999999999999999865332 2233332
Q ss_pred echhhhhcCC---HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--hHHHHHccCCCCCCCc
Q 015918 108 NVREAEETGK---LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGS 182 (398)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~ 182 (398)
.+.... ..+...++......... .+..-+++||+++... ....+...+...+...
T Consensus 81 ----~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ----PSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ----ccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 111111 12222222222211110 2456699999998543 3555555555556677
Q ss_pred EEEEEeCCh-hHHH-hcCCCeeEEcCCCChhh
Q 015918 183 RILITARDK-QALI-NCGVNKIYQIKELVHVD 212 (398)
Q Consensus 183 ~iliTsR~~-~~~~-~~~~~~~~~l~~L~~~e 212 (398)
.+|+++..+ .+.+ ..+.+..+++.+.+...
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 777776643 3332 22456777887744333
No 149
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=1.5e-05 Score=74.56 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCcc-------
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI------- 141 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~------- 141 (398)
++.+.++|+|++|+|||||+..+++.+..+ |+..+|+...++ ....+.++...+...+...... .....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d-~p~~~~~~va~~ 242 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFD-EPASRHVQVAEM 242 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCC-CChHHHHHHHHH
Confidence 456789999999999999999999987666 777788874322 2357778888775444333221 11111
Q ss_pred chHHHHH-hhCCceEEEEEeCCCCh
Q 015918 142 GLNFQSK-RLTRKKVLIVFDDVNHP 165 (398)
Q Consensus 142 ~~~~l~~-~l~~~~~LlvlDd~~~~ 165 (398)
..+.... ...+++++|++|++...
T Consensus 243 v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 243 VIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111111 23578999999999643
No 150
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.03 E-value=0.00022 Score=65.97 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhh--cCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
..++.++||||+|+|||.+|+.+++...-.| +.++ ..++.. ....++.+.+++......
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A~~~--------------- 206 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREAADI--------------- 206 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHHHHH---------------
Confidence 5678999999999999999999999865442 2222 111111 112233333332222110
Q ss_pred HhhCCceEEEEEeCCCCh------------HhH--HHHHccCC--------------CCCCCcEEEEEeCChhHHH--hc
Q 015918 148 KRLTRKKVLIVFDDVNHP------------RQI--EFLIGNLD--------------WFASGSRILITARDKQALI--NC 197 (398)
Q Consensus 148 ~~l~~~~~LlvlDd~~~~------------~~~--~~l~~~l~--------------~~~~~~~iliTsR~~~~~~--~~ 197 (398)
..-+.++++|+||+++.. .+. ..|+..+. ...+...||+||..+.... ..
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 002468999999998520 111 12332211 1234566777775553211 11
Q ss_pred C--CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH
Q 015918 198 G--VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 247 (398)
Q Consensus 198 ~--~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 247 (398)
+ .... .+..-+.++-.++++.+......+ ...+..+++.+.|-|+
T Consensus 287 RpGRfDk-~i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 287 RDGRMEK-FYWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCCc-eeCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 1 1111 233346667777777666333222 2447778888888875
No 151
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5.3e-05 Score=74.79 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=94.5
Q ss_pred cCcccccchhHHHHHHHhccC---CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVG---LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~---~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
+.+=+|-++--++|.++|... ..-+.++++++||||+|||+|++.+++.+..+|-.... ++.+ +.+++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL----GGvr---DEAEI-- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL----GGVR---DEAEI-- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec----Cccc---cHHHh--
Confidence 345678888889999888521 11456899999999999999999999999888632221 1111 11111
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH------hHHHHHccCC------------CC---CCCc
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR------QIEFLIGNLD------------WF---ASGS 182 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~------------~~---~~~~ 182 (398)
+....+.-+ ..+...++.+.. .+.++.+++||+++... .-..++..+. .. -...
T Consensus 393 ---RGHRRTYIG-amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ---RGHRRTYIG-AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ---ccccccccc-cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111111111 122223333333 35677799999996311 1222222221 11 1123
Q ss_pred EEEEEeCChh--HHHhcCCCeeEEcCCCChhhhHHHHHHhhc
Q 015918 183 RILITARDKQ--ALINCGVNKIYQIKELVHVDALKLLNQCAF 222 (398)
Q Consensus 183 ~iliTsR~~~--~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~ 222 (398)
.+|.|+.+.+ +.+.+..-+.|++.+.+.+|=.++..+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3444554433 344456678899999999999999888763
No 152
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.6e-05 Score=73.71 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=94.4
Q ss_pred cCcccccchhHHHHHHHhccCCC---------CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLT---------MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~---------~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
-+++=|-+..+.+|...+..... ..++-+++|||+|+|||.||+.++..+.-. |+. ++
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----f~~----is---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----FLS----IS---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----eEe----ec----
Confidence 45678899999999887742211 456789999999999999999999886444 333 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-------------hHHHHHccC---CCC---
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-------------QIEFLIGNL---DWF--- 178 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l---~~~--- 178 (398)
.. ++.+.+.. ..+....+.+......-|++++||+++... ....|+..+ ...
T Consensus 256 Ap----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 256 AP----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ch----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 01 11111111 111123444445556789999999996310 122222222 211
Q ss_pred CCCcEEEE-EeCChhHHHhcC----CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC
Q 015918 179 ASGSRILI-TARDKQALINCG----VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 245 (398)
Q Consensus 179 ~~~~~ili-TsR~~~~~~~~~----~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 245 (398)
+..+.||- |+|-..+.+.+. ....|.|.--+..+=.++++..+.+-...... -..++++.+-|+
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~---d~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF---DFKQLAKLTPGF 395 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc---CHHHHHhcCCCc
Confidence 12222222 445443322221 33456666556666666676655332222211 167777777654
No 153
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.01 E-value=5.9e-05 Score=66.83 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=35.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..+.++..... .+...++++|++|+|||+|+..+++.+......+.++.
T Consensus 85 l~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 444444443322 33457899999999999999999999876655566654
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.99 E-value=1e-05 Score=68.31 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...-++++|++|+|||.||..+++.+..+...+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4467999999999999999999988666655566665
No 155
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.98 E-value=4.6e-05 Score=74.81 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=45.8
Q ss_pred cccCcccccchhHHHHHHHhccCCC--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....+++--.+-++++.+||..... ...++++|+||+|+||||.++.+++.+ .+...-|..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 3445566667888999999975321 346799999999999999999999985 344555654
No 156
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.97 E-value=0.00061 Score=58.44 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=42.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.-.++||-++-++.+.-.... +..+.++|.||||+||||-+..+++.+-.
T Consensus 25 ~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 446799999999999888776 55678899999999999999999888543
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.97 E-value=0.00043 Score=72.95 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=42.1
Q ss_pred ccCcccccchhHHHHHHHhccCC----C--CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL----T--MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~----~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
-...++|.+..++.+...+.... + .....+++.||+|+|||++|+.+++.+...
T Consensus 563 l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 563 LHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34569999999999999886321 1 123568899999999999999999886544
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.96 E-value=0.00046 Score=71.55 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=40.4
Q ss_pred ccCcccccchhHHHHHHHhccC----CC-C-CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVG----LT-M-DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~----~~-~-~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
-...++|.+..++.+...+... .+ . ....++++||+|+|||+||+.+++.+.
T Consensus 452 l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 452 LKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred HhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 3567899999999998887521 10 1 234688999999999999999999873
No 159
>PRK04132 replication factor C small subunit; Provisional
Probab=97.96 E-value=0.0014 Score=67.86 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=95.2
Q ss_pred EEc--CCCccHHHHHHHHHHHhhcc-Cc-ceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCC
Q 015918 77 IWG--IGGVGKTAIAGAFFSKISRR-FE-GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 152 (398)
Q Consensus 77 I~G--~~G~GKTtLa~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 152 (398)
+.| |.++||||+|..+++.+-.+ +. ..+-++ ++...... .++++...+....+. ...
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid-~IR~iIk~~a~~~~~--------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGIN-VIREKVKEFARTKPI--------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHH-HHHHHHHHHHhcCCc--------------CCC
Confidence 557 99999999999999986332 21 233333 22222222 333333333221110 012
Q ss_pred ceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-hHH-HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCC
Q 015918 153 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QAL-INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 228 (398)
Q Consensus 153 ~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~ 228 (398)
+.-++|||+++.. .....|...+-..+..+++|+++.+. .+. +..+.+..+.+.+++.++..+.+...+.....
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-- 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-- 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--
Confidence 4469999999854 34555555554444566666655544 332 22356788999999999999888776532121
Q ss_pred cchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 229 ASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 229 ~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...++....+++.++|.+.....+...+
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~ 735 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINILQAA 735 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1235678999999999997665554443
No 160
>PRK09183 transposase/IS protein; Provisional
Probab=97.94 E-value=5.3e-05 Score=68.14 Aligned_cols=37 Identities=27% Similarity=0.205 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....++|+||+|+|||+|+..++.........+.|+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4457889999999999999999887554443444543
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00012 Score=74.18 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=85.6
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-Cc-----ceEEEeechhhhhcCCHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FE-----GSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 120 (398)
-.+.+||+.|++++.+.|.... ..--+++|++|+|||+++.-++.++... -+ ..++.-++..+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~---KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-------- 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT---KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-------- 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC---CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH--------
Confidence 3569999999999999997643 2223467999999999999999885433 11 11221111110
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-----------HhHHHHHccCCCCCCCcEEE-EEe
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRIL-ITA 188 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~~~~l~~~l~~~~~~~~il-iTs 188 (398)
.-.....-+.++.....+...-+..+++|+||+++.. +...-+-+.+. ....++| .||
T Consensus 238 --------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT 307 (786)
T COG0542 238 --------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATT 307 (786)
T ss_pred --------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEecc
Confidence 0011000011111222333333345899999999531 11222333333 2233444 455
Q ss_pred CChhH------HHhcCCCeeEEcCCCChhhhHHHHHHh
Q 015918 189 RDKQA------LINCGVNKIYQIKELVHVDALKLLNQC 220 (398)
Q Consensus 189 R~~~~------~~~~~~~~~~~l~~L~~~e~~~Ll~~~ 220 (398)
-++.- .......+.+.+...+.+++..+++-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 33311 112246788899999999999887643
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.93 E-value=0.0002 Score=75.20 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=40.7
Q ss_pred cCcccccchhHHHHHHHhccC----CC-C-CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 47 ENKLVGVDSRIEEILSLLGVG----LT-M-DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~----~~-~-~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...++|.+..++.+...+... .+ . ....++++||+|+|||+||+.+++.+...
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 467999999999998887521 11 1 23457799999999999999999886443
No 163
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.92 E-value=0.00011 Score=76.47 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=84.7
Q ss_pred CcccccchhHHHHHHHhccC---CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVG---LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~---~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
...+|.+...+.+.+++... ...+.+.++++||+|+|||++|+.+++.+...|-. +. .....+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~---i~----~~~~~~~~~i~g- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVR---FS----LGGVRDEAEIRG- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEE---Ee----CCCcccHHHHcC-
Confidence 35788888888888866421 11344589999999999999999999987555321 11 111111111110
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH------hHHHHHccCC--------CC-------CCCcE
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR------QIEFLIGNLD--------WF-------ASGSR 183 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~--------~~-------~~~~~ 183 (398)
....... .......+.+... ...+.+|+||+++... ....++..+. .. ..+..
T Consensus 392 ----~~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 392 ----HRRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ----CCCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0000000 1111122233322 2334488999996431 1122322221 00 02334
Q ss_pred EEEEeCChh--HHHhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 184 ILITARDKQ--ALINCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 184 iliTsR~~~--~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
+|.||.... .....+....+++++++.++-.+++.+.+
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 455554331 12223455789999999999888887654
No 164
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.92 E-value=0.00016 Score=74.93 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=89.6
Q ss_pred cCcccccchhHHHHHHHhccC---CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVG---LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~---~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
+...+|-++.-++|.+++... .......++++||+|+||||+++.++..+...|-. +. .....+...+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~----~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA----LGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE----cCCCCCHHHhcc
Confidence 345899999999998887631 11345679999999999999999999887655322 11 111111111111
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHh------HHHHHccCCCC---------------CCCc
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQ------IEFLIGNLDWF---------------ASGS 182 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~~l~~~l~~~---------------~~~~ 182 (398)
.. ... .. ..+....+.+.. ......+|+||+++.... ...|+..+... -..+
T Consensus 394 ~~-~~~----~g-~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HR-RTY----IG-SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ch-hcc----CC-CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 00 000 00 111112222222 222345789999963221 23444333210 1344
Q ss_pred EEEEEeCChhHH-HhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 183 RILITARDKQAL-INCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 183 ~iliTsR~~~~~-~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
.+|.|+.+..+. +..+....+.+.+++.+|-.++..+++
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455566543322 223456788999999999999988776
No 165
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.92 E-value=9.7e-05 Score=67.95 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=40.0
Q ss_pred ccchhHHHHHHHhccCCC-CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 52 GVDSRIEEILSLLGVGLT-MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~-~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+|...++...+++..-.. ...+.+.|+|++|+|||.|+..+++.+..+...+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 555555556666653221 24567999999999999999999999876655566655
No 166
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.91 E-value=0.00076 Score=62.29 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=34.2
Q ss_pred eEEcCCCChhhhHHHHHHhhcCCCCCC-cchHHHHHHHHHHcCCChHHH
Q 015918 202 IYQIKELVHVDALKLLNQCAFGRDHPD-ASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 202 ~~~l~~L~~~e~~~Ll~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Pl~i 249 (398)
.+++++++.+|+..++.-......... ...+...+++.-.++|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999986653322221 334456677777779999754
No 167
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00057 Score=63.46 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChh-HHHh-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCC
Q 015918 153 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 228 (398)
Q Consensus 153 ~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~ 228 (398)
++-++|+|+++. ......++..+.....+..+|++|.+.. +.+. .+.+..+.+.+++.+++.+.+.... ...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc
Confidence 334566798863 3444455544443334566777776543 3322 2456788999999999998886542 111
Q ss_pred cchHHHHHHHHHHcCCChHH
Q 015918 229 ASYIELTHEAIKYAQGVPIA 248 (398)
Q Consensus 229 ~~~~~~~~~i~~~~~g~Pl~ 248 (398)
....+..++|.|+.
T Consensus 189 ------~~~~l~~~~g~p~~ 202 (325)
T PRK08699 189 ------PEERLAFHSGAPLF 202 (325)
T ss_pred ------HHHHHHHhCCChhh
Confidence 11123568899964
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.88 E-value=5.3e-05 Score=72.17 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=63.8
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc--cCcceEEEeechhhhhcCCHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..+.++.+..++.+...|.. .+.++++|++|+|||++|+.+++.+.. .+..+.|+. .++..+..+++..
T Consensus 174 l~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcc
Confidence 34578888999999998864 347888999999999999999998754 344555655 4444444444332
Q ss_pred HHHHHhcCCCCCCCCc-cchHHHHHhh--CCceEEEEEeCCCC
Q 015918 125 LLSTLLNDGNMNKFPN-IGLNFQSKRL--TRKKVLIVFDDVNH 164 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~-~~~~~l~~~l--~~~~~LlvlDd~~~ 164 (398)
.. .......... .....+.... ..++++||||+++.
T Consensus 245 ~r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 245 YR----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred cC----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 21 1110001111 1122222222 24689999999963
No 169
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.87 E-value=3.9e-05 Score=62.08 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=34.1
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
||+...++++.+.+.... .....|+|+|++|+||+++|+.+...-
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 578888888888776544 455678999999999999999877663
No 170
>PRK06526 transposase; Provisional
Probab=97.86 E-value=4.3e-05 Score=68.32 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
....++|+||+|+|||+||..++.........+.|.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 445689999999999999999998865543334443
No 171
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00037 Score=68.87 Aligned_cols=160 Identities=20% Similarity=0.217 Sum_probs=89.3
Q ss_pred CcccccchhHHHHHHHhccC---CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVG---LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~---~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
+.=+|-++--+++.+++... ...+.++++.+||+|+|||++++.+++.+..+|-. +-+ ++. .+..++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR-fSv---GG~---tDvAeIk-- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR-FSV---GGM---TDVAEIK-- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE-Eec---ccc---ccHHhhc--
Confidence 45678888888888887521 11567899999999999999999999998888632 111 111 1211111
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh------HhHHHHHccC------------CCC-CCCcEEE
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP------RQIEFLIGNL------------DWF-ASGSRIL 185 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------~~~~~l~~~l------------~~~-~~~~~il 185 (398)
....+..+ ..+.-.++.+.. .+..+.|+.||+++.. +.-..++..+ ... -.-++|+
T Consensus 482 ---GHRRTYVG-AMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 482 ---GHRRTYVG-AMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred ---ccceeeec-cCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 00111111 111113333333 2456679999999631 1111222211 111 1223343
Q ss_pred --EEeCCh--hHHHhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 186 --ITARDK--QALINCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 186 --iTsR~~--~~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
.|+..- -..+....-+.|++.+...+|=.++..+++
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 333221 122333455789999999999999988876
No 172
>PRK04296 thymidine kinase; Provisional
Probab=97.82 E-value=3.8e-05 Score=65.76 Aligned_cols=110 Identities=13% Similarity=0.011 Sum_probs=58.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCC--CCCCccchHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM--NKFPNIGLNFQSKRL 150 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 150 (398)
.+.+|+|++|+||||++..++.+.......+.++.. ....... ...+...++..... ..........+.. .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--ccccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 478899999999999999999987666555554431 0011111 11122222111000 0000112222222 2
Q ss_pred CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh
Q 015918 151 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK 191 (398)
Q Consensus 151 ~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~ 191 (398)
.++.-+||||++.- .+++..+...+. ..+..+++|.+..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 33556999999963 333444444432 4678899999874
No 173
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.82 E-value=9.2e-05 Score=61.38 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+++|+|++|+||||++..++.........++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999998776666677776
No 174
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00018 Score=64.47 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
+..-++++|++|+|||.||..+.+.+......+.|+. ..+++..+-...... . ....+...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~-~-------~~~~l~~~l 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG-R-------LEEKLLREL 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC-c-------hHHHHHHHh
Confidence 5567999999999999999999999885545555554 244444444433321 0 112233323
Q ss_pred CCceEEEEEeCCC
Q 015918 151 TRKKVLIVFDDVN 163 (398)
Q Consensus 151 ~~~~~LlvlDd~~ 163 (398)
.. -=||||||+-
T Consensus 166 ~~-~dlLIiDDlG 177 (254)
T COG1484 166 KK-VDLLIIDDIG 177 (254)
T ss_pred hc-CCEEEEeccc
Confidence 32 2389999993
No 175
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.82 E-value=0.0014 Score=64.82 Aligned_cols=175 Identities=14% Similarity=0.155 Sum_probs=106.5
Q ss_pred cccCcccccchhHHHHHHHhccCC--CCCceEEEEEcCCCccHHHHHHHHHHHhh-----ccCcceEEEeechhhhhcCC
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL--TMDTCKLGIWGIGGVGKTAIAGAFFSKIS-----RRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~--~~~~~~i~I~G~~G~GKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~ 117 (398)
..+..+-+|+.|..+|..++..-- .+....+-|+|.+|+|||..+..+.+.++ .+.+...|+. +. ...-..
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~ 470 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLAS 470 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecC
Confidence 467789999999999999886321 13455899999999999999999999754 2222223332 00 222344
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC-----CceEEEEEeCCCChHh--HHHHHccCCCC-CCCcEEEEEe-
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT-----RKKVLIVFDDVNHPRQ--IEFLIGNLDWF-ASGSRILITA- 188 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDd~~~~~~--~~~l~~~l~~~-~~~~~iliTs- 188 (398)
+.++...|...+.... .......+.+..++. .+++++++|+++.... -+-+...+.|. .++++++|.+
T Consensus 471 ~~~~Y~~I~~~lsg~~---~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 471 PREIYEKIWEALSGER---VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHHHHHhcccCc---ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 6777777766664432 122224445554443 4678999999975432 12222222221 3455554432
Q ss_pred -CChhHHHh-c-------CCCeeEEcCCCChhhhHHHHHHhhcCC
Q 015918 189 -RDKQALIN-C-------GVNKIYQIKELVHVDALKLLNQCAFGR 224 (398)
Q Consensus 189 -R~~~~~~~-~-------~~~~~~~l~~L~~~e~~~Ll~~~~~~~ 224 (398)
........ + -+...+...|.+..+..+++..++.+.
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 22211111 1 145778899999999999999887554
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00023 Score=72.03 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=72.4
Q ss_pred ccCcccccchhHHHHHHHhcc----CCC--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHH
Q 015918 46 TENKLVGVDSRIEEILSLLGV----GLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~----~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 119 (398)
-...++|.+..+..+.+.+.. -.+ .....++..||.|||||.||+.++..+-+.-...+-+. ..+..
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~------ 561 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYM------ 561 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHH------
Confidence 445699999999999998741 111 34467888999999999999999998654322222221 11111
Q ss_pred HHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceE-EEEEeCCC--ChHhHHHHHccCC
Q 015918 120 DLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKV-LIVFDDVN--HPRQIEFLIGNLD 176 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~--~~~~~~~l~~~l~ 176 (398)
-..-.+.+.....+.-..+ .-..+-...+.+|+ +|.||+++ +++.+.-|+..+.
T Consensus 562 --EkHsVSrLIGaPPGYVGye-eGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 562 --EKHSVSRLIGAPPGYVGYE-EGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred --HHHHHHHHhCCCCCCceec-cccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 1222233333322211111 23344455566765 89999997 5666777776664
No 177
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.81 E-value=0.00048 Score=68.95 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=41.9
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....++|....++++.+.+.... .....|+|+|++|+|||++|+.+.+...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 44589999999999999886544 4456788999999999999999987643
No 178
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.81 E-value=0.00014 Score=60.78 Aligned_cols=45 Identities=20% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 50 LVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+||....++++.+.+.... .....|+|+|++|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a-~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh-CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888999888876544 44577889999999999999999875
No 179
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.80 E-value=6.4e-05 Score=74.16 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
+..+++.++||+|.||||||..++++- .|. ++=++ ++...+...+-..+...+..+... -
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l-------------~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS-VVEIN----ASDERTAPMVKEKIENAVQNHSVL-------------D 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce-EEEec----ccccccHHHHHHHHHHHHhhcccc-------------c
Confidence 677999999999999999999999873 222 23333 444445555555554444333221 0
Q ss_pred hCCceEEEEEeCCCC
Q 015918 150 LTRKKVLIVFDDVNH 164 (398)
Q Consensus 150 l~~~~~LlvlDd~~~ 164 (398)
..++|.+||+|+++-
T Consensus 384 adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDG 398 (877)
T ss_pred cCCCcceEEEecccC
Confidence 147899999999973
No 180
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.80 E-value=0.0018 Score=66.81 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=40.5
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.-..++|+...++.+.+.+.... .....|.|+|++|+|||++|+.+.+.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999999887776443 445678999999999999999998764
No 181
>PRK06921 hypothetical protein; Provisional
Probab=97.79 E-value=8.2e-05 Score=67.10 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
....+.++|++|+|||.|+..+++.+.++ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 45679999999999999999999997765 45566665
No 182
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0032 Score=62.48 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC-cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 148 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 148 (398)
.....|.|.|+.|+|||+|++.+++.+...- -.+.++.+. ......+..+...+ ......
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs--~l~~~~~e~iQk~l-----------------~~vfse 489 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS--TLDGSSLEKIQKFL-----------------NNVFSE 489 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech--hccchhHHHHHHHH-----------------HHHHHH
Confidence 5667899999999999999999999866432 222233311 11111233332222 223334
Q ss_pred hhCCceEEEEEeCCCChH---------------hHHHHH----ccCCCCCCCcEEEEEeCChh-HHHhc----CCCeeEE
Q 015918 149 RLTRKKVLIVFDDVNHPR---------------QIEFLI----GNLDWFASGSRILITARDKQ-ALINC----GVNKIYQ 204 (398)
Q Consensus 149 ~l~~~~~LlvlDd~~~~~---------------~~~~l~----~~l~~~~~~~~iliTsR~~~-~~~~~----~~~~~~~ 204 (398)
.+.-.|.+|+|||++... -+..++ ..+........+|.|..+.. +.+.+ .......
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 455678899999995211 011111 11111112223444443321 11111 2345678
Q ss_pred cCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 015918 205 IKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGR 254 (398)
Q Consensus 205 l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~~ 254 (398)
|+++...+=.+++........ .....+..+.+...|+| .|.-++.+..
T Consensus 570 L~ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred cCCcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHHHHHH
Confidence 999988888888876553222 22233446668888876 4666666553
No 183
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.79 E-value=0.00044 Score=71.14 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=40.8
Q ss_pred ccCcccccchhHHHHHHHhccC----CC--CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVG----LT--MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~----~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
-...++|.+..++.|...+... .+ .....+.++||+|+|||++|+.+++.+.
T Consensus 456 L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 456 LKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred hcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999987621 10 2235789999999999999999998874
No 184
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.78 E-value=0.0002 Score=66.49 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...+.++|++|+|||.|+..+++.+..+...++|++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367999999999999999999999776665667765
No 185
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.78 E-value=9.1e-05 Score=63.89 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCC
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 152 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 152 (398)
..++|.||+|+||||++..++..+.......++.. ..+... .... ...+..............+.+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~----e~~~E~---~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI----EDPIEF---VHES-KRSLINQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE----cCCccc---cccC-ccceeeecccCCCccCHHHHHHHHhcC
Confidence 47899999999999999998888765443333332 111000 0000 000000000001112245566677777
Q ss_pred ceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeC
Q 015918 153 KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 153 ~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
.+=+|++|++.+.+......... ..+..++.|+-
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~H 107 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLH 107 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEec
Confidence 78899999998776655544432 23444555553
No 186
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.76 E-value=0.00031 Score=60.40 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCC
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN 136 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 136 (398)
.+.+...+. ++.++++|+|++|+||||+++.+...+...-..++++... ......+.......
T Consensus 7 ~~a~~~~l~----~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT---------~~Aa~~L~~~~~~~---- 69 (196)
T PF13604_consen 7 REAVRAILT----SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT---------NKAAKELREKTGIE---- 69 (196)
T ss_dssp HHHHHHHHH----CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS---------HHHHHHHHHHHTS-----
T ss_pred HHHHHHHHh----cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc---------HHHHHHHHHhhCcc----
Confidence 334444444 3447899999999999999999988877664445554411 11111222222110
Q ss_pred CCCccchHHHHHhh----------CCceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeC
Q 015918 137 KFPNIGLNFQSKRL----------TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 137 ~~~~~~~~~l~~~l----------~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
..-+..+.... ..+.-+||+|++. +...+..++.... ..+.++|+..-
T Consensus 70 ---a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 70 ---AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp ---EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred ---hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 00111111110 1223599999995 4456666666655 24778877764
No 187
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.75 E-value=0.00013 Score=64.09 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..|-..|.+.- ....++.|+|++|+|||||+.+++.....+...++|+.
T Consensus 5 i~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344555565443 66789999999999999999999988765555677775
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.74 E-value=0.0014 Score=61.09 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=39.6
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...++|+...++++.+.+.... .....|+|+|++|+||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3468999999999999887554 44567889999999999999988754
No 189
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.74 E-value=0.00015 Score=67.49 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=60.2
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceE-EEeechhhhhcCCHHHHHHHHHHHHhcCCCCC
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMN 136 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 136 (398)
.++.+.+... ++.+.++|+|++|+|||||++.+++.+..+.+.+. ++..+ ......+.++...+...+......
T Consensus 121 ~RvID~l~Pi--GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvast~d- 195 (380)
T PRK12608 121 MRVVDLVAPI--GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYASTFD- 195 (380)
T ss_pred Hhhhhheeec--CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEeecCC-
Confidence 3456655533 34466789999999999999999998766543332 22211 223456677777777655443211
Q ss_pred CCCcc---c----hHHHHHh-hCCceEEEEEeCCC
Q 015918 137 KFPNI---G----LNFQSKR-LTRKKVLIVFDDVN 163 (398)
Q Consensus 137 ~~~~~---~----~~~l~~~-l~~~~~LlvlDd~~ 163 (398)
..... . ......+ -.+++++||+|++.
T Consensus 196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111 1 1111111 25789999999984
No 190
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.001 Score=63.99 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=41.7
Q ss_pred CcccccchhHHHHHHHhc-----cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 48 NKLVGVDSRIEEILSLLG-----VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~-----~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.++.--..-+.++..||. .+. -+.+++.|+||+|+||||.++.++..+. +...-|.
T Consensus 82 eeLAVHkkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskelg--~~~~Ew~ 142 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKELG--YQLIEWS 142 (634)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhhC--ceeeeec
Confidence 345555667888999987 333 5678999999999999999999998743 2334454
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.73 E-value=3.4e-05 Score=67.68 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+-.++|.|++|+|||||+..+...+...|..+++++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 335779999999999999999999999997777665
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.73 E-value=2.1e-05 Score=63.78 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
|+|+|++|+|||+||+.+++.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~ 26 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRP 26 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcc
Confidence 6899999999999999999998333
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.72 E-value=0.00078 Score=62.84 Aligned_cols=46 Identities=24% Similarity=0.187 Sum_probs=36.9
Q ss_pred ccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 50 LVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++|+...++.+.+.+.... .....|+|+|++|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 5788888888888776544 455678999999999999999887653
No 194
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.72 E-value=0.0017 Score=64.54 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=43.3
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....++|+...++++.+.+.... .....|.|+|++|+||+++|+.+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 56689999999999999887655 5567889999999999999999987643
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.72 E-value=0.00024 Score=60.96 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH--hhccCcceEEEeechhhhh-----cCCHHHHHHH
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK--ISRRFEGSYFAHNVREAEE-----TGKLADLRKE 124 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~-----~~~~~~~~~~ 124 (398)
.+..+.+...+.|.. ..++++.|++|+|||.||...+-+ ...+|..+++......... +.+..+-...
T Consensus 4 p~~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp --SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------T
T ss_pred CCCHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 345555666666642 358999999999999999998865 3456777777653221111 1111111111
Q ss_pred HHHHHhcCCCCCCCCccchHHHH----------HhhCCc---eEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeC
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQS----------KRLTRK---KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~----------~~l~~~---~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
.+..+...... -......+.+. .+++++ ..+||+|++.+ ..++..++..+ +.+++++++.-
T Consensus 79 ~~~p~~d~l~~-~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD 154 (205)
T PF02562_consen 79 YLRPIYDALEE-LFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGD 154 (205)
T ss_dssp TTHHHHHHHTT-TS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE-
T ss_pred HHHHHHHHHHH-HhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecC
Confidence 11111110000 00111122221 123443 46999999965 45666666654 68999999885
Q ss_pred C
Q 015918 190 D 190 (398)
Q Consensus 190 ~ 190 (398)
.
T Consensus 155 ~ 155 (205)
T PF02562_consen 155 P 155 (205)
T ss_dssp -
T ss_pred c
Confidence 3
No 196
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00016 Score=63.85 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..|-+.|.++- ....++.|+|++|+|||+||.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34555555443 56789999999999999999999988766666778877
No 197
>PRK09354 recA recombinase A; Provisional
Probab=97.71 E-value=0.0002 Score=66.38 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhccccc-----c-ccCcccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 27 KLIEEIVSEVLERLDDTF-----E-TENKLVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 27 ~~i~~~~~~~~~~l~~~~-----~-~~~~fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+-++....++..+...-. . .....---..-...|-..|. +.- +..+++.|+|++|+||||||.+++......
T Consensus 9 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~ 87 (349)
T PRK09354 9 KALEAALKQIEKQFGKGSIMRLGDDAAMDVEVISTGSLALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKA 87 (349)
T ss_pred HHHHHHHHHHHHHhCCCCceEcccccccCCceecCCcHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 345555666666543321 0 11112222334555666676 444 778899999999999999999999887666
Q ss_pred CcceEEEe
Q 015918 100 FEGSYFAH 107 (398)
Q Consensus 100 f~~~~~~~ 107 (398)
...++|+.
T Consensus 88 G~~~~yId 95 (349)
T PRK09354 88 GGTAAFID 95 (349)
T ss_pred CCcEEEEC
Confidence 67788887
No 198
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.70 E-value=0.0002 Score=63.57 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=38.1
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..|-..|.++- +...++.|+|++|+|||+|+.+++.....+-..+.|+.
T Consensus 11 i~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 344555565544 67889999999999999999999877545566677776
No 199
>PHA00729 NTP-binding motif containing protein
Probab=97.69 E-value=0.00044 Score=60.04 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+...++|+|++|+||||||..+++.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999999999998854
No 200
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.66 E-value=0.00024 Score=66.78 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
....++|+|++|+||||+++.++..+.......++.. ..+ .+..... ...+................+...+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti----Edp---~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI----EDP---IEYVHRN-KRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE----cCC---hhhhccC-ccceEEccccCCCCcCHHHHHHHhh
Confidence 3478999999999999999999887765444444443 111 0000000 0000011000011112456677778
Q ss_pred CCceEEEEEeCCCChHhHHHHHc
Q 015918 151 TRKKVLIVFDDVNHPRQIEFLIG 173 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~~~~~~l~~ 173 (398)
...|=+|++|++.+.+.......
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~ 215 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALT 215 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHH
Confidence 88899999999987776654333
No 201
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.65 E-value=0.00015 Score=63.22 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..+++.|+|++|+|||+|+.+++.........++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 66789999999999999999999988766666788887
No 202
>PTZ00494 tuzin-like protein; Provisional
Probab=97.65 E-value=0.01 Score=56.20 Aligned_cols=166 Identities=10% Similarity=-0.014 Sum_probs=94.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..+..+|.|+.|-..+.+.|.......+++++++|..|+|||+|++...++ ++. -.+|+. ... .++.+..
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk--E~~-paV~VD----VRg---~EDtLrs 437 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV--EGV-ALVHVD----VGG---TEDTLRS 437 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH--cCC-CeEEEE----ecC---CcchHHH
Confidence 577889999999999999998776678999999999999999999998766 222 255665 222 2333444
Q ss_pred HHHHHhcCCCCC--CCCccchHHHH---HhhCCceEEEEEeCC--CChH-hHHHHHccCCCCCCCcEEEEEeCChhHHH-
Q 015918 125 LLSTLLNDGNMN--KFPNIGLNFQS---KRLTRKKVLIVFDDV--NHPR-QIEFLIGNLDWFASGSRILITARDKQALI- 195 (398)
Q Consensus 125 i~~~l~~~~~~~--~~~~~~~~~l~---~~l~~~~~LlvlDd~--~~~~-~~~~l~~~l~~~~~~~~iliTsR~~~~~~- 195 (398)
+.+.++-..... +.-+...+... ....++..+||+-== .+.. .+.+... +...-.-|+|++----+....
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~va-LacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVS-LVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHH-HHccchhheeeeechHhhhchh
Confidence 445553321100 11111112221 123455556665432 2221 1121111 111123566665332221111
Q ss_pred --hcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 196 --NCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 196 --~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
.+.....+.+++|+.+++-++.+..+
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhccc
Confidence 11244678899999999998886654
No 203
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00031 Score=65.23 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=60.7
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcC-C
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND-G 133 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~ 133 (398)
.-+.++.+.|.+.- -...+++|-|.||+|||||..+++.++.++. .+.|++. ..++.++... +..+... .
T Consensus 77 tg~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~QiklR-A~RL~~~~~ 147 (456)
T COG1066 77 TGIEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKLR-ADRLGLPTN 147 (456)
T ss_pred CChHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHHH-HHHhCCCcc
Confidence 33455556665433 3557899999999999999999999988777 6788762 2233322211 1222211 1
Q ss_pred CCCCCCccchHHHHHhh-CCceEEEEEeCCC
Q 015918 134 NMNKFPNIGLNFQSKRL-TRKKVLIVFDDVN 163 (398)
Q Consensus 134 ~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~ 163 (398)
...-..+...+.+...+ ..+|-++|+|.+.
T Consensus 148 ~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred ceEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 11111222445555544 4578899999983
No 204
>PRK06696 uridine kinase; Validated
Probab=97.65 E-value=0.00011 Score=64.70 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.|.+.+++|.+.+.....+++.+|+|.|++|+||||||..++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 466777888887764333678899999999999999999999988654
No 205
>PHA02244 ATPase-like protein
Probab=97.65 E-value=0.00048 Score=64.06 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=35.8
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.-+..|+|....+......+.... .....+.|+|++|+|||+||+.+++.+...
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l-~~~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIV-NANIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345567887766654433332211 223457889999999999999999885433
No 206
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00023 Score=59.82 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=29.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.+.++|+||+||||+|+++++.+.++...++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 46889999999999999999999888865555543
No 207
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=5.6e-05 Score=59.55 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 208
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00093 Score=59.39 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=88.9
Q ss_pred CcccccchhHHHHHHHh----------ccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLL----------GVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L----------~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
+.+.|-+..-+.|.+.. .+.. ..-+-|+++||+|.|||.||+.++-.... .|++ ++.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vSS--- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VSS--- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----eeh---
Confidence 45777777777777754 2222 44688999999999999999999866432 2333 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHH-hhCCceEEEEEeCCCC---------hHhHHH----HHccCC---CCCC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSK-RLTRKKVLIVFDDVNH---------PRQIEF----LIGNLD---WFAS 180 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDd~~~---------~~~~~~----l~~~l~---~~~~ 180 (398)
.+++..++ + ..+-++..+.. .-.++|.+|+||+++. .+..+. |+-... ....
T Consensus 200 -SDLvSKWm---G-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 200 -SDLVSKWM---G-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred -HHHHHHHh---c-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 22222221 1 11112222222 2256899999999952 122222 221111 1123
Q ss_pred CcEEEEEeCChhHHHh---cCCCeeEEcCCCChhhhH-HHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 181 GSRILITARDKQALIN---CGVNKIYQIKELVHVDAL-KLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 181 ~~~iliTsR~~~~~~~---~~~~~~~~l~~L~~~e~~-~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
+..|+-.|..+-+... -+....|.+ ||....+. .+|.-++ + ..+....+.-..++.+.+.|..
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl-G-~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL-G-DTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc-C-CCccccchhhHHHHHhhcCCCC
Confidence 3334434443322111 112233444 45555555 3444443 2 3455555566888888887754
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00091 Score=62.71 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.++++++|+|++|+||||++..++..+..+-..+.++.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34579999999999999999999988765544455554
No 210
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0029 Score=59.68 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|--+++||||+|||+++.++++.+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC
Confidence 46788999999999999999998753
No 211
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0019 Score=62.86 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
.+.-|++|||+|+|||-||+.+++.-.-+| ++..+ .+ +++....+ .+......+.+.-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKG--------PE----LlNkYVGE-----SErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKG--------PE----LLNKYVGE-----SERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCce-----EeecC--------HH----HHHHHhhh-----HHHHHHHHHHHhh
Confidence 456789999999999999999998865553 43111 11 11111111 1111222233333
Q ss_pred CCceEEEEEeCCCCh-------------HhHHHHHccCCCC--CCCcEEEEEeCChh-HHHhc----CCCeeEEcCCCCh
Q 015918 151 TRKKVLIVFDDVNHP-------------RQIEFLIGNLDWF--ASGSRILITARDKQ-ALINC----GVNKIYQIKELVH 210 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~~--~~~~~iliTsR~~~-~~~~~----~~~~~~~l~~L~~ 210 (398)
..-|++|++|+++.. ..+..|+..+.-. ..+..||-.|..++ +.+.+ .....+.++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 467999999999531 1233344444322 23455554443332 22211 2334556666677
Q ss_pred hhhHHHHHHhhc
Q 015918 211 VDALKLLNQCAF 222 (398)
Q Consensus 211 ~e~~~Ll~~~~~ 222 (398)
+|=.+++.....
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 888888887764
No 212
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.58 E-value=0.00017 Score=66.29 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=40.0
Q ss_pred hhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-...|-..|. +.- +..+++.|+||+|+||||||.+++.........++|+.
T Consensus 38 TGi~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 38 TGSLSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCCHHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 33445556665 444 67889999999999999999999988766666677876
No 213
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00036 Score=68.40 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=79.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
..++-|+++||||+|||++|+.+++.-.-.| +... .. +++..... ..+....+.....
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvk--------gp----EL~sk~vG-----eSEr~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVK--------GP----ELFSKYVG-----ESERAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCe-----eecc--------CH----HHHHHhcC-----chHHHHHHHHHHH
Confidence 5678899999999999999999998755553 2210 01 11111211 1111122222333
Q ss_pred hCCceEEEEEeCCCChH-------------hHHHHHccCCCC--CCCcEEEE-EeCChhHHHhc-C---CCeeEEcCCCC
Q 015918 150 LTRKKVLIVFDDVNHPR-------------QIEFLIGNLDWF--ASGSRILI-TARDKQALINC-G---VNKIYQIKELV 209 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~~~--~~~~~ili-TsR~~~~~~~~-~---~~~~~~l~~L~ 209 (398)
=+--|++|+||+++... .+..++..+.-. ..+..||. |.|...+...+ + ....+.+++-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 34467999999996322 123333333322 22333333 33433222221 2 33456666666
Q ss_pred hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 210 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 210 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
.+.-.++|..++..-...+. --.+++++.+.|.-
T Consensus 604 ~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 604 LEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 66667888877633222221 12677777777654
No 214
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.56 E-value=0.013 Score=51.84 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=116.6
Q ss_pred ccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEeechh------hhh---
Q 015918 50 LVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAHNVRE------AEE--- 114 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~~--- 114 (398)
..++.+.-+.+...... ...+...++||+|.||-|.+..+.+.+-+ +-+...|.+.... .+.
T Consensus 15 l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred cccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 55555555555555442 56788999999999999999999987433 1233344431110 000
Q ss_pred --------cCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceE-EEEEeCCCChH-----hHHHHHccCCCCCC
Q 015918 115 --------TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKV-LIVFDDVNHPR-----QIEFLIGNLDWFAS 180 (398)
Q Consensus 115 --------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDd~~~~~-----~~~~l~~~l~~~~~ 180 (398)
...-+-+..+++.++....+.+ ....+++ ++||-.+++.. .++..+... ..
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY---s~ 156 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKY---SS 156 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHH---hc
Confidence 0111344555555554332211 0112333 77787776432 233333333 46
Q ss_pred CcEEEEEeCCh--hHHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc
Q 015918 181 GSRILITARDK--QALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR 258 (398)
Q Consensus 181 ~~~iliTsR~~--~~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~ 258 (398)
.+++|+...+. -+.+--+.+-.++++..+++|....+.+.+....... ..+++.++++.++||-.-.-++...++-
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 78877644322 2222224566789999999999999988773333222 2688999999999987665555544432
Q ss_pred -----------CCHHHHHHHHHHh
Q 015918 259 -----------KRKEVWENAISKL 271 (398)
Q Consensus 259 -----------~~~~~~~~~~~~l 271 (398)
.+.-+|+.+..+.
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHH
Confidence 1234676666554
No 215
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00091 Score=66.34 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
...+.+.++||+|+|||.||+.++......| +.... .++... ... ..+..........
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~f-----i~v~~--------~~l~sk----~vG-----esek~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRF-----ISVKG--------SELLSK----WVG-----ESEKNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeE-----EEeeC--------HHHhcc----ccc-----hHHHHHHHHHHHH
Confidence 4556899999999999999999998654443 22100 011100 000 1111122333333
Q ss_pred hCCceEEEEEeCCCCh-------------HhHHHHHccCC--CCCCCcEEEEEeCChhHHHhc-----CCCeeEEcCCCC
Q 015918 150 LTRKKVLIVFDDVNHP-------------RQIEFLIGNLD--WFASGSRILITARDKQALINC-----GVNKIYQIKELV 209 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~--~~~~~~~iliTsR~~~~~~~~-----~~~~~~~l~~L~ 209 (398)
.+..+++|++|+++.. .....++..+. ....++.||-+|-.+...... +....+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 4578999999999521 12333333332 123344455555443222211 234577888889
Q ss_pred hhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC
Q 015918 210 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG 244 (398)
Q Consensus 210 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g 244 (398)
.++-.++|..+......+ ....-....+++.+.|
T Consensus 412 ~~~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 412 LEERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 999999998887422221 1112224555555555
No 216
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.54 E-value=0.0004 Score=65.60 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=38.3
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..|-+.|.+.- ....++.|.|++|+|||||+.+++.........+.|++
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445555565443 55679999999999999999999988766655677776
No 217
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.00022 Score=65.61 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=39.9
Q ss_pred hhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-+..|-..|. +.- +..+++.|+|++|+||||||.+++.........++|+.
T Consensus 38 TGi~~LD~~Lg~GGl-p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 38 TGSLSLDLALGVGGL-PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCCHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 33455556665 444 77889999999999999999999988766666677876
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.51 E-value=0.00016 Score=62.03 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+++++++||.|+||||.+.+++.++..+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 468999999999999999999998776655566665
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.00082 Score=62.45 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
++.+++++|++|+||||++..++..+..+-..+.++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li 174 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA 174 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 468999999999999999999998876653334443
No 220
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.49 E-value=0.00011 Score=68.06 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=42.1
Q ss_pred cccccchhHHHHHHHhccCC---CCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 49 KLVGVDSRIEEILSLLGVGL---TMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~---~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.++|-++.++++.+++.... ..+.++++|+||+|+||||||..+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999986432 145688999999999999999999988643
No 221
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.49 E-value=0.0016 Score=66.35 Aligned_cols=156 Identities=12% Similarity=0.088 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
.+-++|+|++|+|||++++.++......| +.+. . .++.. .... .........+.....
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is----~------~~~~~----~~~g-----~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS----G------SDFVE----MFVG-----VGASRVRDMFEQAKK 242 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe----h------HHhHH----hhhc-----ccHHHHHHHHHHHHh
Confidence 34599999999999999999988754432 1222 0 01100 0000 000011222223334
Q ss_pred CceEEEEEeCCCChH----------------hHHHHHccCCCC--CCCcEEEEEeCChhHHH-hc----CCCeeEEcCCC
Q 015918 152 RKKVLIVFDDVNHPR----------------QIEFLIGNLDWF--ASGSRILITARDKQALI-NC----GVNKIYQIKEL 208 (398)
Q Consensus 152 ~~~~LlvlDd~~~~~----------------~~~~l~~~l~~~--~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L 208 (398)
..|++|+||+++... .+..++..+... ..+..+|.||..+.... .. .....+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 578999999996431 122232222211 23444555665543221 11 23456778888
Q ss_pred ChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHH
Q 015918 209 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKIL 252 (398)
Q Consensus 209 ~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l 252 (398)
+.++-.+++..+.......... ....+++.+.| .+--|..+
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~---d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLANL 364 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcC---CHHHHHhhCCCCCHHHHHHH
Confidence 8888888887776332211111 14456666655 33344433
No 222
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.49 E-value=0.00087 Score=58.47 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=87.4
Q ss_pred CcccccchhHHH---HHHHhccCCC---CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH
Q 015918 48 NKLVGVDSRIEE---ILSLLGVGLT---MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 48 ~~fvGR~~el~~---l~~~L~~~~~---~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.++||.+..-+. |..+|..+.. =.++-|+.+||+|.|||-+|+.+++..+.-| +.+. + .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~---l~vk----a------t~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL---LLVK----A------TEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce---EEec----h------HHH
Confidence 356777665444 4445543211 1357889999999999999999987744331 1111 0 111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--------------hHhHHHHHccCCCC--CCCcEEE
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--------------PRQIEFLIGNLDWF--ASGSRIL 185 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--------------~~~~~~l~~~l~~~--~~~~~il 185 (398)
....... .....-+.....-+.-||+++||+++. .+....++..+... ..|..-|
T Consensus 188 ----iGehVGd-----gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 188 ----IGEHVGD-----GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred ----HHHHhhh-----HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 1111000 000011122222345799999999853 22345555554322 2333333
Q ss_pred EEeCChhHHHh---cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC
Q 015918 186 ITARDKQALIN---CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 245 (398)
Q Consensus 186 iTsR~~~~~~~---~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 245 (398)
..|..++.... ...-..|+..--+.+|-.+++...+..-..+.. .-.+.+++.+.|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 33433322221 123345666666788888888776522111111 1156666676664
No 223
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.49 E-value=0.00067 Score=59.81 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEe
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAH 107 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~ 107 (398)
.|-..|.+.- ....++.|+|++|+|||+|+.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 3444454433 5678999999999999999999998754443 5567776
No 224
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.48 E-value=0.0021 Score=55.48 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=45.3
Q ss_pred ccCcccccchhHHHHHHHhc---cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 46 TENKLVGVDSRIEEILSLLG---VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~---~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-..++|-+...+.|.+.-. .+ -...-|.+||..|+|||+|++.+...+..+....+=+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 34568898888888776432 11 45567899999999999999999999888876644443
No 225
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0013 Score=66.33 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=94.7
Q ss_pred CcccccchhHHH---HHHHhccCCC------CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEE---ILSLLGVGLT------MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~---l~~~L~~~~~------~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
.++.|-++.-++ +..+|..+.. .-++-+.|+||||+|||-||+.++-.- .+.|++. +.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~sv----SG---- 377 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSV----SG---- 377 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeee----ch----
Confidence 456666655444 4445543211 346789999999999999999998652 2344541 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcc-chHHHHHhhCCceEEEEEeCCCCh-----------------HhHHHHHccCCCC--
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTRKKVLIVFDDVNHP-----------------RQIEFLIGNLDWF-- 178 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~~-----------------~~~~~l~~~l~~~-- 178 (398)
.++.+ .+.. .... ..+.....-.+.|++|.+|+++.. ..+..++..+.-.
T Consensus 378 SEFvE----~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 378 SEFVE----MFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred HHHHH----Hhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 11111 1111 1111 122222223467899999998531 1233333333211
Q ss_pred CCCcEEEEEeCChhHHHh--c---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHH
Q 015918 179 ASGSRILITARDKQALIN--C---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 249 (398)
Q Consensus 179 ~~~~~iliTsR~~~~~~~--~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i 249 (398)
..+..++.+|...++... + +....+.++.-+...-.++|..++...... ....+... ++..+-|++=+.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 233334444443333221 1 233557777778888888898887444433 23334444 888888877554
No 226
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.47 E-value=0.00042 Score=58.58 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....++++.|++|+||||+++.+++.+...+...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45569999999999999999999999887776666654
No 227
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.46 E-value=0.0019 Score=53.01 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=63.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHh--cCCC---C--CCCCcc----
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL--NDGN---M--NKFPNI---- 141 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~--~~~~---~--~~~~~~---- 141 (398)
..|.|++.+|.||||+|...+-+...+-..+.++..+.... ......++..+ ..+. ..+. . ....+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 47889999999999999999988666666666665443321 12222222222 1110 0000 0 000010
Q ss_pred --chHHHHHhhC-CceEEEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCChh
Q 015918 142 --GLNFQSKRLT-RKKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 192 (398)
Q Consensus 142 --~~~~l~~~l~-~~~~LlvlDd~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 192 (398)
........+. +.-=|+|||++- ..-+.+.+...+........+|+|+|+.+
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1112222233 344599999983 22233444444444466788999999864
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00017 Score=58.25 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEE
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFA 106 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~ 106 (398)
.--++|+|+||+||||++..+.+.++++ |...-|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 3468899999999999999999998777 5444443
No 229
>PRK07261 topology modulation protein; Provisional
Probab=97.45 E-value=0.00056 Score=57.47 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 230
>PRK08118 topology modulation protein; Reviewed
Probab=97.45 E-value=0.00014 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|+|++|+||||||+.+++.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998854
No 231
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.42 E-value=0.00068 Score=65.94 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=41.3
Q ss_pred cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 53 VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 53 R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
-..-+..|-+.|.+.- ....+++|.|++|+|||||+.+++.....+...+.|++
T Consensus 76 i~TGi~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 76 FSSGFGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cccCcHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3444566667676544 66789999999999999999999988765545577776
No 232
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00094 Score=63.94 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=31.4
Q ss_pred chhHHHHHHHhccCCC------CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 54 DSRIEEILSLLGVGLT------MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~------~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..|++++.++|..+.. .-++-|+++||||.|||-||+.++-.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3566777777764321 34577999999999999999999754
No 233
>PRK07667 uridine kinase; Provisional
Probab=97.40 E-value=0.00045 Score=59.30 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
++.|.+.+.... +...+|+|.|++|+||||+|..+...+....
T Consensus 3 ~~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~~ 45 (193)
T PRK07667 3 TNELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQEG 45 (193)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 345666665444 5568999999999999999999999876543
No 234
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.40 E-value=0.00093 Score=59.29 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=34.0
Q ss_pred HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc------CcceEEEe
Q 015918 60 ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 107 (398)
Q Consensus 60 l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~------f~~~~~~~ 107 (398)
|-..|.+.- ....++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 8 lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 344444433 567899999999999999999998663222 25677876
No 235
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.39 E-value=0.0013 Score=54.75 Aligned_cols=121 Identities=13% Similarity=0.030 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCC--CCCcc-------
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN--KFPNI------- 141 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~------- 141 (398)
....+.|++..|.||||.|..++.+...+-..+..+..+.... .......+..+.-.+...+... ...+.
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 3468889999999999999999988666655554444333221 1122223322210111111100 00010
Q ss_pred --chHHHHHhhCC-ceEEEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCChh
Q 015918 142 --GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 192 (398)
Q Consensus 142 --~~~~l~~~l~~-~~~LlvlDd~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 192 (398)
..+.....+.. .-=++|||++. ..-+.+.+...+...++...||+|.|+.+
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12222233333 34499999983 22223333334444467789999999863
No 236
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.37 E-value=0.00092 Score=60.30 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
....++|.|+.|+||||++..+...+......++.+.+..+.. .. .+ .++. ............+...+
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~----~~-~q~~---v~~~~~~~~~~~l~~~l 146 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IP----GI-NQVQ---VNEKAGLTFARGLRAIL 146 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CC----Cc-eEEE---eCCcCCcCHHHHHHHHh
Confidence 4468999999999999999999887654322333332111110 00 00 0000 00011112556677778
Q ss_pred CCceEEEEEeCCCChHhHHHHHcc
Q 015918 151 TRKKVLIVFDDVNHPRQIEFLIGN 174 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~~~~~~l~~~ 174 (398)
+..|=.|+++++.+.+....+...
T Consensus 147 R~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 147 RQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred ccCCCEEEeccCCCHHHHHHHHHH
Confidence 888889999999888765554444
No 237
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.00091 Score=64.99 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=39.3
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-+..|-+.|.+.- ....++.|.|++|+|||||+.+++.....+...++|++
T Consensus 64 TGi~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 64 TGIGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CCcHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34556666666544 55679999999999999999999988765545677776
No 238
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.37 E-value=0.0064 Score=62.35 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=40.1
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.-+.++|....++++.+.+.... .....|.|+|++|+||+++|+.+.+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 34569999999999888776544 344568899999999999999987763
No 239
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.37 E-value=0.00073 Score=56.64 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh-ccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~-~~f~~~~~~~ 107 (398)
...+.+.||+|+|||.||+.+++.+. +.....+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 35788999999999999999999987 4544344443
No 240
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.36 E-value=0.0014 Score=60.49 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh------ccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS------RRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~------~~f~~~~~~~ 107 (398)
...|-..|.++- +...++-|+|++|+|||+|+.+++-... ..-..++|+.
T Consensus 82 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 445555666544 6778899999999999999999885422 1234677876
No 241
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.36 E-value=0.014 Score=58.07 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=38.7
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..-..++|....++++.+.+.... .....|.|+|++|+||+.+|+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLA-MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHh-CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 455579999999988888775333 34456889999999999999996543
No 242
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.31 E-value=0.00052 Score=60.27 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=34.6
Q ss_pred hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 56 RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 56 el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+-.++...+.... ++..+|+|+|+||+|||||...+...+..+-..+..+.
T Consensus 14 ~~~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlA 64 (266)
T PF03308_consen 14 EARELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLA 64 (266)
T ss_dssp HHHHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEE
Confidence 3344555554433 56789999999999999999999999876654444443
No 243
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.31 E-value=0.0031 Score=60.83 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++.++.++|++|+||||++..++..+..+...+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 4678999999999999999999998876543344443
No 244
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.30 E-value=0.001 Score=59.09 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=38.8
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..|-+.|.++- +...+++|.|++|+|||+|+.+++.....+...++|++
T Consensus 7 i~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 345556666555 67889999999999999999999887545566677776
No 245
>PRK05973 replicative DNA helicase; Provisional
Probab=97.29 E-value=0.00066 Score=59.75 Aligned_cols=38 Identities=13% Similarity=-0.026 Sum_probs=31.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+..+++|.|++|+|||+|+.+++.....+...++|++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56679999999999999999999988655555566765
No 246
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.29 E-value=0.0021 Score=54.64 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998875
No 247
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.041 Score=55.44 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=55.1
Q ss_pred cccccCcccccchhHH-HHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechh
Q 015918 43 TFETENKLVGVDSRIE-EILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE 111 (398)
Q Consensus 43 ~~~~~~~fvGR~~el~-~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~ 111 (398)
.|....+=||=-++++ +|.+.++- +. .+..-|.++||+|+|||-||+.++-...-. |++..+
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssgl-rkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlSVKG- 738 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGL-RKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLSVKG- 738 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccc-cccceeEEECCCCCchHHHHHHHHhhceee-----EEeecC-
Confidence 3345555555544444 45555432 22 335678899999999999999998664333 333111
Q ss_pred hhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC
Q 015918 112 AEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH 164 (398)
Q Consensus 112 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 164 (398)
. ++++.-.. +.++-..+...+.-...||+|++|++++
T Consensus 739 -------P----ELLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 739 -------P----ELLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred -------H----HHHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1 11111111 1111133333334456899999999964
No 248
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.26 E-value=0.00086 Score=63.10 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=60.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
..++-+-|||+.|.|||-|+..+++.+..+-...+.+. .++.++-..+.... .....+..+...
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh------------~Fm~~vh~~l~~~~----~~~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH------------EFMLDVHSRLHQLR----GQDDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc------------HHHHHHHHHHHHHh----CCCccHHHHHHH
Confidence 56788999999999999999999998655333233322 23333333332221 111134455566
Q ss_pred hCCceEEEEEeCCC--ChHh---HHHHHccCCCCCCCcEEEEEeC
Q 015918 150 LTRKKVLIVFDDVN--HPRQ---IEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 150 l~~~~~LlvlDd~~--~~~~---~~~l~~~l~~~~~~~~iliTsR 189 (398)
+.++..||+||+++ +..+ +..++..+. ..|..++.||.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 67777799999984 3332 344444433 35665555553
No 249
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.26 E-value=0.00054 Score=56.01 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..+|.|+|.+|+||||||+.+.+++......+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999988877777765
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.24 E-value=0.0021 Score=58.22 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.++++++|++|+||||++..++..+......+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688999999999999999999988766644455554
No 251
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.23 E-value=0.0027 Score=69.74 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..++-|+++||+|+|||.||+.++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999999873
No 252
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.20 E-value=0.00059 Score=54.22 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.8
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++.+++.+.+.... ....++++.|+.|+|||||++.+++.+.
T Consensus 6 ~~t~~l~~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44555666555433 4556899999999999999999998853
No 253
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.19 E-value=0.0015 Score=58.56 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEee
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN 108 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~ 108 (398)
.+.+.++|.|++|+|||||+.++++..+.+|...+++..
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~ 105 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAG 105 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEE
Confidence 456788999999999999999999998877766666653
No 254
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.18 E-value=0.0033 Score=56.22 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=65.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.....|+|+||.|+||||........+.+++...+... .++-..+..-...+..+--.. .......+.++..
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI----EDPIE~vh~skkslI~QREvG----~dT~sF~~aLraA 194 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI----EDPIEYVHESKKSLINQREVG----RDTLSFANALRAA 194 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe----cCchHhhhcchHhhhhHHHhc----ccHHHHHHHHHHH
Confidence 45679999999999999888888888777765544433 122222222222222221000 1111266778888
Q ss_pred hCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEe
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 188 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTs 188 (398)
|++-|=+|++-+..+.+.+..-+.. ..-.++++.|
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtA----AETGHLV~~T 229 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTA----AETGHLVFGT 229 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHH----HhcCCEEEEe
Confidence 8888889999999888776654444 2334455555
No 255
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.18 E-value=0.001 Score=55.53 Aligned_cols=30 Identities=13% Similarity=0.048 Sum_probs=23.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.|.|++|+|||++|.+++.. .....+|+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 679999999999999999876 223456654
No 256
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.17 E-value=0.00097 Score=65.72 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=41.8
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-+..|-+.|.+.- .+..+++|.|++|+|||||+.+++.....+...++|++
T Consensus 247 tGi~~lD~~lgGG~-~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGF-FKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred CChHhHHHHhcCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44566777776655 67789999999999999999999998766666677765
No 257
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.17 E-value=0.017 Score=57.23 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=39.1
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..++|....++.+.+.+..-. .....|.|+|++|+||+.+|+.+.+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A-~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA-RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 459999999999988876433 44568999999999999999998865
No 258
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.17 E-value=0.005 Score=61.01 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=39.1
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..++|....++++.+.+..-. .....|.|+|++|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A-~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA-RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999998876433 44568999999999999999999876
No 259
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.17 E-value=0.0018 Score=54.79 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....++|.|+.|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345689999999999999999998764
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.17 E-value=0.00052 Score=67.14 Aligned_cols=50 Identities=26% Similarity=0.275 Sum_probs=42.2
Q ss_pred cccccchhHHHHHHHh----ccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 49 KLVGVDSRIEEILSLL----GVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L----~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+++|-++.+++|.+.| .+.. .+.++++++||+|+||||||+.+++.+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 6899999999999988 2333 567899999999999999999999876443
No 261
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00073 Score=58.94 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh------------------------ccCcceEEEeechhhh--------hcCC
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS------------------------RRFEGSYFAHNVREAE--------ETGK 117 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~------------------------~~f~~~~~~~~~~~~~--------~~~~ 117 (398)
...-.+.|.||+|+|||||.+.++--.+ +++.--.|.+...++. ....
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 4456899999999999999999885311 1111122222111110 0111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcc------chHHHHHhhCCceEEEEEeCCC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNI------GLNFQSKRLTRKKVLIVFDDVN 163 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~------~~~~l~~~l~~~~~LlvlDd~~ 163 (398)
.......++...+..+..+..+.. +.-.+.+.+...|-++.+|+-.
T Consensus 107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 123455555555555554455544 4455566777888899999963
No 262
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.16 E-value=0.0055 Score=57.15 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh------ccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS------RRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~------~~f~~~~~~~ 107 (398)
..|-..|.++- ....++-|+|++|+|||+|+.+++-... .....++|+.
T Consensus 113 ~~LD~lLgGGi-~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGI-ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCC-CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 34555555444 5678888999999999999999985432 1124678876
No 263
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.16 E-value=0.002 Score=54.31 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
....+++|.|+.|+|||||.+.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4456899999999999999998853
No 264
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00087 Score=59.81 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+|...+.... ++..+++|+|+||+|||||...+...+..+-..+..+.
T Consensus 38 ~~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA 86 (323)
T COG1703 38 RELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA 86 (323)
T ss_pred HHHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence 34555554444 67889999999999999999999999877766555554
No 265
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.16 E-value=0.0016 Score=58.73 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=37.7
Q ss_pred HHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 62 SLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 62 ~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.+.+.- +..++++|+|++|+|||+++.+++.........++|++
T Consensus 14 ~~l~GG~-p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGL-PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCC-cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3344433 67889999999999999999999999888888888887
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.15 E-value=0.0025 Score=53.81 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHh--cCCC---CCC-CCcc---
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL--NDGN---MNK-FPNI--- 141 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~--~~~~---~~~-~~~~--- 141 (398)
....+.|+|..|-||||.|...+-+...+-..+..+..+.... .......+..+ ..+. ..+. ... ..+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999999988666655566655443321 11222222221 0010 0000 000 0001
Q ss_pred ----chHHHHHhhC-CceEEEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCChh
Q 015918 142 ----GLNFQSKRLT-RKKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 192 (398)
Q Consensus 142 ----~~~~l~~~l~-~~~~LlvlDd~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 192 (398)
..+.....+. ++-=++|||++. ..-+.+++...+...+....||+|.|..+
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222223333 344599999983 22223334444444467889999999763
No 267
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0069 Score=57.01 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~ 107 (398)
....+++++||+|+||||++.+++......+ ..+.++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3467999999999999999999998854432 3455544
No 268
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.14 E-value=0.0014 Score=59.14 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=24.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.|+|+|.||+||||+|+++...+...-..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 47899999999999999999998877544455554
No 269
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.14 E-value=0.0034 Score=51.43 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+++|+|.+|+||||+++.+...+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~ 26 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQR 26 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999987543
No 270
>PTZ00035 Rad51 protein; Provisional
Probab=97.14 E-value=0.0057 Score=57.15 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=36.3
Q ss_pred hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEe
Q 015918 56 RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 107 (398)
Q Consensus 56 el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~ 107 (398)
-...|-..|.++- +...++.|+|++|+|||+|+.+++....- .-..++|+.
T Consensus 103 G~~~LD~lLgGGi-~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 103 GSTQLDKLLGGGI-ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred CcHHHHHHhCCCC-CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 3455666666544 67789999999999999999999865431 223456766
No 271
>PRK05439 pantothenate kinase; Provisional
Probab=97.13 E-value=0.0016 Score=59.69 Aligned_cols=39 Identities=28% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 60 ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 60 l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+..++.....+.+-+|+|.|++|+||||+|+.+...+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334443222266789999999999999999999887654
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.13 E-value=0.0016 Score=52.98 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
....+++|.|+.|+|||||++.++....- ....+++.......-... -+..+...-.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~lara 84 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKL 84 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHH
Confidence 34568999999999999999999876432 233333321000000000 02222233444555
Q ss_pred hCCceEEEEEeCCC---ChHhHHHHHccCCCCCCCcEEEEEeCChhHHH
Q 015918 150 LTRKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQALI 195 (398)
Q Consensus 150 l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~ 195 (398)
+-.++-++++|+-. +......+...+... +..++++|.+.....
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 66677899999973 333333333333222 246777777665443
No 273
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.13 E-value=0.0013 Score=62.96 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=39.3
Q ss_pred cccCcccccchhHHHHHHHhcc----C---------CCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLGV----G---------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~----~---------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.-...++|.+...+.+...+.. . .......++++||+|+|||+||+.+++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3445689999999988665521 0 0012367899999999999999999987643
No 274
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.13 E-value=0.006 Score=55.39 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
....+++|.|++|+|||||+.+++.....+ ...+.|++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 455689999999999999999999886544 55677776
No 275
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.12 E-value=0.0009 Score=60.27 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+...++.|.|++|+|||+|+.+++.....+-..++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 66789999999999999999999887555556677776
No 276
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0079 Score=55.65 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHhccccccccCcccccchhHHHHHHHhc----------cCCCCCceEEEEEcCCCccHHHHHHHHHH
Q 015918 25 ESKLIEEIVSEVLERLDDTFETENKLVGVDSRIEEILSLLG----------VGLTMDTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 25 ~~~~i~~~~~~~~~~l~~~~~~~~~fvGR~~el~~l~~~L~----------~~~~~~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
++.+++-+..++..+-+.. .=.++.|-.+..+-|.+.+. +.. ..=+-++++||+|+|||-||+.++-
T Consensus 191 d~~Lve~lerdIl~~np~i--kW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 191 DADLVEALERDILQRNPNI--KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred hHHHHHHHHHHHhccCCCc--ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHH
Confidence 4455555555555544332 22456777766666666542 222 3447799999999999999999986
Q ss_pred Hhh
Q 015918 95 KIS 97 (398)
Q Consensus 95 ~~~ 97 (398)
.-.
T Consensus 268 Ec~ 270 (491)
T KOG0738|consen 268 ECG 270 (491)
T ss_pred hhc
Confidence 643
No 277
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.12 E-value=0.0034 Score=52.79 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++++.|++|+||||++..++..+.+....+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999988776644444444
No 278
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.12 E-value=0.00041 Score=55.03 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|+|.|++|+||||+|+.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 279
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.12 E-value=0.00085 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 280
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.11 E-value=0.0058 Score=51.02 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=34.9
Q ss_pred chHHHHHhhCCceEEEEEeCC----CChHhHHH--HHccCCCCCCCcEEEEEeCChhHHHhcC
Q 015918 142 GLNFQSKRLTRKKVLIVFDDV----NHPRQIEF--LIGNLDWFASGSRILITARDKQALINCG 198 (398)
Q Consensus 142 ~~~~l~~~l~~~~~LlvlDd~----~~~~~~~~--l~~~l~~~~~~~~iliTsR~~~~~~~~~ 198 (398)
+.-.+.+..-++|-+++-|+- +....|+- ++..++ ..|..|+++|-+........
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 555666777889999999985 32222222 223332 45778999998887666543
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.11 E-value=0.00044 Score=56.10 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+|++.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987754
No 282
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.10 E-value=0.018 Score=56.79 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=39.6
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...++|+...++.+.+.+.... .....+.|+|++|+|||++|+.+.+..
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~-~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLS-RSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cccceecCHHHHHHHHHHHHHh-ccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3569999999999888776444 455678899999999999999887753
No 283
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.10 E-value=0.0017 Score=55.02 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHH------HHHHHHHHHhcCCCCC------C
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLAD------LRKELLSTLLNDGNMN------K 137 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------~~~~i~~~l~~~~~~~------~ 137 (398)
.+..+++|.|+.|+|||||++.++..... ....+++... ... ...... ...+++..+....... +
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 44568999999999999999999876432 2333444311 000 001111 1111222222111110 1
Q ss_pred CCccchHHHHHhhCCceEEEEEeCCC---ChHhHHHHHccCCCC-CC-CcEEEEEeCChhHH
Q 015918 138 FPNIGLNFQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-AS-GSRILITARDKQAL 194 (398)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~-~~-~~~iliTsR~~~~~ 194 (398)
..+...-.+...+-..|-++++|+-. +....+.+...+... .. +..+|++|-+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11113334445566788899999973 333333333333221 22 56788888766543
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.09 E-value=0.0056 Score=50.03 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.-.+.|+||+|+|||||.+.++.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3568899999999999999999853
No 285
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0095 Score=59.24 Aligned_cols=152 Identities=20% Similarity=0.144 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
..-|.++||+|+|||.||..++....-+ |++.. . .++ +..... ..++...+...+.-.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-----fisvK-------G-PEl----L~KyIG-----aSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-----FISVK-------G-PEL----LSKYIG-----ASEQNVRDLFERAQS 758 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-----EEEec-------C-HHH----HHHHhc-----ccHHHHHHHHHHhhc
Confidence 3568899999999999999998664322 34311 1 111 111111 111113444444556
Q ss_pred CceEEEEEeCCCCh-------------HhHHHHHccCCC--CCCCcEEEE-EeCChhHHHhc-C--CC-eeEEcCCCChh
Q 015918 152 RKKVLIVFDDVNHP-------------RQIEFLIGNLDW--FASGSRILI-TARDKQALINC-G--VN-KIYQIKELVHV 211 (398)
Q Consensus 152 ~~~~LlvlDd~~~~-------------~~~~~l~~~l~~--~~~~~~ili-TsR~~~~~~~~-~--~~-~~~~l~~L~~~ 211 (398)
-+||++++|++++. .....++..+.- .-.|.-|+. |||...+.+.+ + .. ..+.-+.-+..
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 79999999999641 224445444432 123555554 55544332221 1 11 12222223444
Q ss_pred hhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 015918 212 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 248 (398)
Q Consensus 212 e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~ 248 (398)
|=.++++........+. .--.+-++..++|..-|
T Consensus 839 eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 55566654432111111 11266677777776643
No 286
>PF13245 AAA_19: Part of AAA domain
Probab=97.08 E-value=0.00088 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++++|.|++|+|||+++.+....+.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788899999999966666665543
No 287
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.08 E-value=0.00052 Score=58.99 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+|+|.|++|+||||||+.+...+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 589999999999999999999987543
No 288
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.07 E-value=0.0033 Score=52.56 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeech---hhhhcC--CHHHHHHHHHHHHhcCCCCCCCCccchH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVR---EAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLN 144 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~---~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 144 (398)
.....++|.|+.|+|||||++.++..+.-. ...+++.... -..+.. ....+.+.+... ....-+..+...-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv 100 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRL 100 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHH
Confidence 345689999999999999999998764322 1222221000 001111 111222222110 1110022222444
Q ss_pred HHHHhhCCceEEEEEeCCC---ChHhHHHHHccCCCCCCCcEEEEEeCChhHH
Q 015918 145 FQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQAL 194 (398)
Q Consensus 145 ~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 194 (398)
.+...+-.+|-++++|+-. +......+...+... +..+|++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 4455566778899999973 333333333333222 35677777665443
No 289
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.07 E-value=0.00038 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
|.|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999886654
No 290
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0033 Score=53.61 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=34.9
Q ss_pred chHHHHHhhCCceEEEEEeCCC---ChHhHHHHHccCCC-CCCCcEEEEEeCChhHHHhc
Q 015918 142 GLNFQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDW-FASGSRILITARDKQALINC 197 (398)
Q Consensus 142 ~~~~l~~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~-~~~~~~iliTsR~~~~~~~~ 197 (398)
+.-.+.+.|.-+|-++.+|+.- +++...+.+..+.. ...+..+++.|-+...+...
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 4555667778888899999984 44444443333221 14567788888776655543
No 291
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.06 E-value=0.0013 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.|+++|++|+||||+|+.+.+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~ 27 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKN 27 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 378999999999999999998876543
No 292
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.06 E-value=0.0048 Score=53.61 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=34.1
Q ss_pred chHHHHHhhCCceEEEEEeCCC---ChH---hHHHHHccCCCCCCCcEEEEEeCChhHHHhc
Q 015918 142 GLNFQSKRLTRKKVLIVFDDVN---HPR---QIEFLIGNLDWFASGSRILITARDKQALINC 197 (398)
Q Consensus 142 ~~~~l~~~l~~~~~LlvlDd~~---~~~---~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~ 197 (398)
+.-.+.+.+-..|-+|+.|+=- +.. .+-.++..+.. ..+..+|+.|-++.++...
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC
Confidence 5556667788889999999852 222 22233333221 2366788888888777654
No 293
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.045 Score=49.71 Aligned_cols=127 Identities=9% Similarity=-0.020 Sum_probs=70.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-------------CcceEEEeechhhhhcCCHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-------------FEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
-++|...+..+ .-+....++|+.|+||+++|..+++.+-.. .+...++..... .......
T Consensus 6 ~~~L~~~i~~~--rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~I~id---- 78 (290)
T PRK05917 6 WEALIQRVRDQ--KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRLHSIE---- 78 (290)
T ss_pred HHHHHHHHHcC--CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCcCcHH----
Confidence 34556666543 235677799999999999999999875321 222222210000 0000111
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHH
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALI 195 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~ 195 (398)
.+..+...+ .+..-++|||+++. .+....++..+-..+++..+|++|.+. .+.+
T Consensus 79 ------------------qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 79 ------------------TPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ------------------HHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 111222222 23445889999974 455667776666556666666666553 3433
Q ss_pred h-cCCCeeEEcCCC
Q 015918 196 N-CGVNKIYQIKEL 208 (398)
Q Consensus 196 ~-~~~~~~~~l~~L 208 (398)
. .+.+..+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 3 345677778775
No 294
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0021 Score=53.96 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.....++|.|+.|+|||||++.++....
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4557899999999999999999987643
No 295
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0023 Score=56.59 Aligned_cols=93 Identities=16% Similarity=0.093 Sum_probs=53.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEee-chhhhhcCCHHHHHHHHHHHHhcCC-CCC------CCCcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN-VREAEETGKLADLRKELLSTLLNDG-NMN------KFPNI 141 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~-~~~------~~~~~ 141 (398)
.+..+++|+|.+|+||||+++.+..-..-....+.|-.. +...+ .....+...+++...+... ... +....
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 455789999999999999999999875434333333210 11111 1122233444444443221 111 11222
Q ss_pred chHHHHHhhCCceEEEEEeCCC
Q 015918 142 GLNFQSKRLTRKKVLIVFDDVN 163 (398)
Q Consensus 142 ~~~~l~~~l~~~~~LlvlDd~~ 163 (398)
+.-.+.+.+.-+|-++|.|+.-
T Consensus 116 QRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCch
Confidence 5556667788899999999974
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.04 E-value=0.0016 Score=55.49 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=28.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++|.|++|+|||+|+.+++......-..+.|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999988666666677776
No 297
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.04 E-value=0.0011 Score=55.32 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.....++|.|+.|+|||||++.++....- ....+++... ... .....+.. ......... -+..+...-.+...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~-~~~-~~~~~~~~---~~~i~~~~q-LS~G~~qrl~lara 96 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGK-EVS-FASPRDAR---RAGIAMVYQ-LSVGERQMVEIARA 96 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-ECC-cCCHHHHH---hcCeEEEEe-cCHHHHHHHHHHHH
Confidence 34568999999999999999999865432 2334444311 010 01111110 000100000 02222234444555
Q ss_pred hCCceEEEEEeCCC---ChHhHHHHHccCCCC-CCCcEEEEEeCChhHH
Q 015918 150 LTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQAL 194 (398)
Q Consensus 150 l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~ 194 (398)
+-..|-++++|+-. +....+.+...+... ..+..+|++|.+....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 66678899999973 333333333333211 2356788888776543
No 298
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.03 E-value=0.0037 Score=57.01 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc-C-cceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f-~~~~~~~ 107 (398)
..++++|+||+|+||||++..++..+..+ . ..+.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 46799999999999999999999887544 2 3445544
No 299
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.03 E-value=0.00084 Score=57.12 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.++++|+||+|+|||||+..++......|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 478999999999999999999999888886555554
No 300
>PRK04328 hypothetical protein; Provisional
Probab=97.02 E-value=0.0024 Score=57.19 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=37.3
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..|-+.|.++- +...++.|.|++|+|||+|+.+++.....+...++|++
T Consensus 10 ~~LD~lL~GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34555565544 67789999999999999999999887545556677776
No 301
>PRK06762 hypothetical protein; Provisional
Probab=97.01 E-value=0.00072 Score=56.49 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.+++|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.00 E-value=0.00098 Score=58.82 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 60 ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 60 l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
|-+.|.++- +...+++|.|++|+|||+|+.+++.....+ -..++|++
T Consensus 8 LD~~l~GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 344454433 677899999999999999999999775555 56677776
No 303
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.00 E-value=0.00052 Score=53.69 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=21.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
+.|+|.+|+|||++|+.+++.+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 7899999999999999999998888765444
No 304
>PRK06547 hypothetical protein; Provisional
Probab=96.98 E-value=0.0013 Score=55.19 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+|+|.|++|+||||+++.+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999874
No 305
>PTZ00301 uridine kinase; Provisional
Probab=96.98 E-value=0.00078 Score=58.43 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
++.+|+|.|++|+||||||..+.+.+...
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 35789999999999999999998876543
No 306
>PRK08233 hypothetical protein; Provisional
Probab=96.98 E-value=0.00068 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998864
No 307
>PRK04040 adenylate kinase; Provisional
Probab=96.98 E-value=0.00085 Score=57.24 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
..+++|+|++|+||||+++.+++.+...+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~ 30 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDY 30 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCC
Confidence 35899999999999999999999875333
No 308
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0058 Score=55.07 Aligned_cols=97 Identities=22% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHH-HhcCC--CCC
Q 015918 60 ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLST-LLNDG--NMN 136 (398)
Q Consensus 60 l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~--~~~ 136 (398)
|-..|.+.- +..+++=|+||.|+||||+|.+++-........++|+. ......+.. ..++... +.... ..+
T Consensus 49 LD~~LGGGl-~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~~l~p~r-~~~l~~~~~d~l~v~~~~ 122 (279)
T COG0468 49 LDEALGGGL-PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEHALDPER-AKQLGVDLLDNLLVSQPD 122 (279)
T ss_pred HHHHhcCCc-ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCCCCCHHH-HHHHHHhhhcceeEecCC
Confidence 344444433 77788999999999999999999988777777889987 333333332 3334444 21111 111
Q ss_pred CCCcc--chHHHHHhhCCceEEEEEeCC
Q 015918 137 KFPNI--GLNFQSKRLTRKKVLIVFDDV 162 (398)
Q Consensus 137 ~~~~~--~~~~l~~~l~~~~~LlvlDd~ 162 (398)
...+. .++.+.....++--|+|+|.+
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 11111 233333333333559999998
No 309
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.038 Score=48.47 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=38.4
Q ss_pred ccCcccccchhHHHHHHHhccCC----------CCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL----------TMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~----------~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.-+.+=|-+..+++|.+.+.-+. ...++-++++||+|.|||-+|+.-+.+.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 33567788999999988763211 1456778999999999999999877653
No 310
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.97 E-value=0.0026 Score=57.91 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..+-+|+|.|++|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999988876654
No 311
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0094 Score=59.04 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=89.8
Q ss_pred cccCcccccchhHHHHHHHh---ccCCC------CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 45 ETENKLVGVDSRIEEILSLL---GVGLT------MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L---~~~~~------~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
..-.+..|.++..+++.+.+ ..+.. .-++-+.++||+|+|||.||+.++-...-. |+. .|.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP-----Ff~----iSG- 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFS----ISG- 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC-----cee----ccc-
Confidence 44456788877666666554 33220 235778999999999999999998653222 222 111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcc-chHHHHHhhCCceEEEEEeCCCC----------------hHhHHHHHccCCCC
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTRKKVLIVFDDVNH----------------PRQIEFLIGNLDWF 178 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~LlvlDd~~~----------------~~~~~~l~~~l~~~ 178 (398)
.++. +++. ..+.. ..+...+..++-|++|+||.++. .+.+..++-...-.
T Consensus 217 ---S~FV-emfV---------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 217 ---SDFV-EMFV---------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred ---hhhh-hhhc---------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 1110 1110 11111 33444555567789999999853 12334444333322
Q ss_pred C--CCcEEEEEeCChhHHH-h----cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 015918 179 A--SGSRILITARDKQALI-N----CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 248 (398)
Q Consensus 179 ~--~~~~iliTsR~~~~~~-~----~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~ 248 (398)
. .+..++..|..+++.. . .+....+.++.-+...-.+++.-++........- + ...+++.+-|.--+
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d-l~~iAr~tpGfsGA 357 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D-LKKIARGTPGFSGA 357 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C-HHHHhhhCCCcccc
Confidence 2 2332332222222221 1 1233445555555556666666555333222111 1 34477787776543
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.0065 Score=52.24 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=22.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.-..|.||||+|||||.+.+++-+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 347789999999999999999886555
No 313
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.95 E-value=0.0027 Score=60.99 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCC
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN 136 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 136 (398)
.+.+.+.+. ....+++++||.|+||||....+...+......++-+.+.-+ .....+......+
T Consensus 247 ~~~~~~~~~----~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE------------~~~~gI~Q~qVN~ 310 (500)
T COG2804 247 LARLLRLLN----RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE------------YQLPGINQVQVNP 310 (500)
T ss_pred HHHHHHHHh----CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee------------eecCCcceeeccc
Confidence 334444444 456899999999999999999999987766655444331100 0011111111111
Q ss_pred CCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCC
Q 015918 137 KFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
...-.....++..|+..|=+|++.++.+.+..+-..... -.+++++||=.
T Consensus 311 k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlSTlH 360 (500)
T COG2804 311 KIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLSTLH 360 (500)
T ss_pred ccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeeecc
Confidence 222225677888889899999999998777655444442 24457777743
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.94 E-value=0.002 Score=56.88 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+....+.|.|++|+|||||+.+++.....+.....|++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 55679999999999999999888887644445566665
No 315
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.0012 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
++|+|++|+|||||++.+++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999999999987543
No 316
>COG4240 Predicted kinase [General function prediction only]
Probab=96.92 E-value=0.0047 Score=52.89 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC-cceEEEeechhhhhcCCHHHHHHHHHHH---HhcCCCCCCCCcc--ch
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLST---LLNDGNMNKFPNI--GL 143 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~---l~~~~~~~~~~~~--~~ 143 (398)
+++-+++|+||.|+||||++..+...+..++ ..+...+ ++.-+....-...++.+ +......+..++. ..
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS----LDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS----LDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee----hhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 5678999999999999999999999987776 4555555 33323223333333333 2233333344554 55
Q ss_pred HHHHHhhCCceE
Q 015918 144 NFQSKRLTRKKV 155 (398)
Q Consensus 144 ~~l~~~l~~~~~ 155 (398)
+.+....++++.
T Consensus 124 nVLnai~~g~~~ 135 (300)
T COG4240 124 NVLNAIARGGPT 135 (300)
T ss_pred HHHHHHhcCCCC
Confidence 666666666544
No 317
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.33 Score=44.53 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc---------Cc-ceEEEeechhhhhcCCHHHHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR---------FE-GSYFAHNVREAEETGKLADLRKELL 126 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (398)
++.+.+.+..+ .-.++..++|+.|+||++++..+.+.+-.. .+ ...++.. ........++. ++.
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHHHH-HHH
Confidence 44555555442 245677799999999999999999886211 11 1222210 00112222221 222
Q ss_pred HHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCCh-hHHHh-cCCCee
Q 015918 127 STLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKI 202 (398)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~-~~~~~~ 202 (398)
..+.... .-.+.+=++|+|+++.. .....++..+...++.+.+|++|... .+.+. .+.+..
T Consensus 79 ~~~~~~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 79 NKLYFSS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HHhccCC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 2221110 00145668999999754 34556666666556677666655443 33332 356788
Q ss_pred EEcCCCChhhhHHHHHHh
Q 015918 203 YQIKELVHVDALKLLNQC 220 (398)
Q Consensus 203 ~~l~~L~~~e~~~Ll~~~ 220 (398)
+++.+++.++..+.+...
T Consensus 144 ~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK 161 (299)
T ss_pred EECCCCCHHHHHHHHHHc
Confidence 999999999999887653
No 318
>PRK14531 adenylate kinase; Provisional
Probab=96.91 E-value=0.0035 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.|+|.|++|+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998875
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.013 Score=56.60 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh--ccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~--~~f~~~~~~~ 107 (398)
.+++++.||+|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988765 3334455554
No 320
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0079 Score=56.35 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.++++|+||.|+||||++..++..+..+...+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45689999999999999999999988755544555655
No 321
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.90 E-value=0.0024 Score=56.42 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..|-+.+.+.- +....++|.|++|+|||+|+.+++.....+...++|++
T Consensus 7 ~~LD~~l~GGi-~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGI-PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCC-cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555554444 56789999999999999999998876545555677776
No 322
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.90 E-value=0.0026 Score=59.92 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCc---ceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFE---GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
....++|+|+.|+||||+++.+++.+....+ .++.+.+..+ ....... ... ..................+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE----~~~~~~~-~~~-~~v~Q~~v~~~~~~~~~~l~ 206 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE----FVYDEIE-TIS-ASVCQSEIPRHLNNFAAGVR 206 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce----Eeccccc-ccc-ceeeeeeccccccCHHHHHH
Confidence 4579999999999999999999988754332 2222221111 0000000 000 00000000011112456667
Q ss_pred HhhCCceEEEEEeCCCChHhHHHHHcc
Q 015918 148 KRLTRKKVLIVFDDVNHPRQIEFLIGN 174 (398)
Q Consensus 148 ~~l~~~~~LlvlDd~~~~~~~~~l~~~ 174 (398)
..++..|-.+++.++.+.+.....+..
T Consensus 207 ~aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 207 NALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HHhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 788888899999999888776544433
No 323
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.89 E-value=0.0025 Score=56.21 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=25.0
Q ss_pred hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 56 RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 56 el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+.+...+.. ..+.+|+||||+|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHh
Confidence 34455555532 2379999999999999888888877
No 324
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.89 E-value=0.0032 Score=53.07 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeec--hhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV--REAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS 147 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 147 (398)
....+++|.|+.|+|||||++.++....-. ...+++... .-..+... -+......-.+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~la 83 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID------------------LSGGELQRVAIA 83 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHH
Confidence 345689999999999999999988654322 223333210 00000000 022222344445
Q ss_pred HhhCCceEEEEEeCCC---ChHhHHHHHccCCCC--CCCcEEEEEeCChhHHH
Q 015918 148 KRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWF--ASGSRILITARDKQALI 195 (398)
Q Consensus 148 ~~l~~~~~LlvlDd~~---~~~~~~~l~~~l~~~--~~~~~iliTsR~~~~~~ 195 (398)
..+..++-++++|+-. +......+...+... ..+..+|++|-+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 5566778899999973 333322222222111 12255777776664443
No 325
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.0055 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+.++|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 388999999999999999999853
No 326
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.89 E-value=0.001 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++++++|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 327
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.89 E-value=0.001 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.++++|.|++|+||||+++.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998775
No 328
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.89 E-value=0.001 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+..+|+|.|++|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999887
No 329
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.001 Score=60.22 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+.+.++|++|+|||++++.+...+..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc
Confidence 467899999999999999998876543
No 330
>PRK06217 hypothetical protein; Validated
Probab=96.86 E-value=0.0047 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|.|.+|+||||+++.+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998863
No 331
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0058 Score=52.00 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.-|+|-...++.+.=-+ +..++..+.||+|+|||||.+.+-+-
T Consensus 13 l~~yYg~~~aL~~i~l~i-----~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 13 LNLYYGDKHALKDINLDI-----PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eeEEECchhhhccCceec-----cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 345677555554443323 56689999999999999999987653
No 332
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.85 E-value=0.012 Score=53.12 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCC---CCCCcc-chHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM---NKFPNI-GLNFQ 146 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~-~~~~l 146 (398)
....++|.|++|+|||||.+.++..+.... ..+++... .........++... ...+...... +-.... ....+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~~-G~i~~~g~-~v~~~d~~~ei~~~-~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTGI-SQLGLRGK-KVGIVDERSEIAGC-VNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCCC-ceEEECCE-EeecchhHHHHHHH-hcccccccccccccccccchHHHHH
Confidence 356899999999999999999998765442 23333210 00000011111111 0011000000 000010 11122
Q ss_pred HHhh-CCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhH
Q 015918 147 SKRL-TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 193 (398)
Q Consensus 147 ~~~l-~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~ 193 (398)
...+ ...|-++++|+....+.+..+...+. .+..+|+|+-....
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2222 25788999999977666666655543 46778888865443
No 333
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0062 Score=57.79 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+++++++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998765
No 334
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0035 Score=56.17 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=35.5
Q ss_pred cccccchhHHHHHHHhcc---------C-CCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 49 KLVGVDSRIEEILSLLGV---------G-LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~---------~-~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
++-|--..+.++.+.+.- . ....+..++||||+|.|||-+|+.++....-+|
T Consensus 133 ~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 344555555555555421 0 114567899999999999999999998865553
No 335
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.84 E-value=0.0037 Score=59.02 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCc-c-eEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE-G-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
...++|+|+.|+||||++..++..+....+ . ++-+.+..+.... ... .+....... .. .........+...
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~----~~~~~~q~e-vg-~~~~~~~~~l~~a 221 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPD----DLLPPAQSQ-IG-RDVDSFANGIRLA 221 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCc----eeecccccc-cC-CCccCHHHHHHHh
Confidence 357899999999999999999888754332 2 2222211110000 000 000000000 00 1111245677778
Q ss_pred hCCceEEEEEeCCCChHhHHHHHcc
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFLIGN 174 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l~~~ 174 (398)
++..|=.|+++++.+.+..+..+..
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHH
Confidence 8889999999999988877654433
No 336
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.057 Score=50.54 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=38.6
Q ss_pred CCeeEEcCCCChhhhHHHHHHhhcCCCCC-CcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 199 VNKIYQIKELVHVDALKLLNQCAFGRDHP-DASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 199 ~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
...++++++.+.+|+.+++.-........ ....++..+++.=.++|||..++.+|..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 55778999999999999876544221111 00113446777778899998777777654
No 337
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.84 E-value=0.0035 Score=59.32 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=39.9
Q ss_pred CcccccchhHHHHHHHhccC-----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 48 NKLVGVDSRIEEILSLLGVG-----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
..++|.++..+.+.-.+... ..-.++.++++||+|+|||++|+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45889888888887666431 002346799999999999999999999875543
No 338
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.83 E-value=0.0058 Score=60.22 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=25.3
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.++|.+.+. ..++|+|+|..|+||||-+.++++.
T Consensus 361 R~~ll~~ir-----~n~vvvivgETGSGKTTQl~QyL~e 394 (1042)
T KOG0924|consen 361 RDQLLSVIR-----ENQVVVIVGETGSGKTTQLAQYLYE 394 (1042)
T ss_pred HHHHHHHHh-----hCcEEEEEecCCCCchhhhHHHHHh
Confidence 344445443 3469999999999999988887765
No 339
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.83 E-value=0.0029 Score=49.39 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.6
Q ss_pred ccccc----hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 50 LVGVD----SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 50 fvGR~----~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++|.. ..++.|.+.+......++-++..+|++|+|||.+++.+++.+
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45544 455666666666554677788899999999999999999884
No 340
>PRK15115 response regulator GlrR; Provisional
Probab=96.83 E-value=0.083 Score=51.68 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=36.7
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...++|+...+..+.+...... .....+.|+|++|+|||++|+.+.+..
T Consensus 133 ~~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 133 REAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hhcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 3468899888887777554332 344568899999999999999887653
No 341
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.83 E-value=0.0012 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....|+|+|++|+||||+++.+++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999886
No 342
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.82 E-value=0.0013 Score=57.27 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+...+++|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5668999999999999999999998764
No 343
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.82 E-value=0.0025 Score=64.40 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=43.4
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
.-++++|.++.++.+...+... +.+.++|++|+||||+++.+++.+... |...+++.
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~-----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~ 73 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK-----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP 73 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe
Confidence 3457899999998888877642 367799999999999999999987654 23344443
No 344
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.81 E-value=0.0097 Score=54.76 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=39.0
Q ss_pred chhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 54 DSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 54 ~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..-...|-..|. +.- +..+++-|+|++|+|||||+.++...........+|+.
T Consensus 35 ~TG~~~LD~aLg~GG~-p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 35 STGSPALDYALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp --S-HHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ecCCcccchhhccCcc-ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 444555666665 333 67789999999999999999999998766667778876
No 345
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.81 E-value=0.0046 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998774
No 346
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.81 E-value=0.0033 Score=52.95 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....++|.|+.|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345689999999999999999998764
No 347
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.80 E-value=0.0069 Score=55.64 Aligned_cols=44 Identities=25% Similarity=0.082 Sum_probs=33.0
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFF 93 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~ 93 (398)
...+-+|..+..--.+.|.. +....|.+.|.+|+|||-||....
T Consensus 223 vwGi~prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred hhccCcccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHH
Confidence 34455666666666666655 678899999999999998887665
No 348
>PRK14528 adenylate kinase; Provisional
Probab=96.79 E-value=0.0059 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.++|.|++|+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998775
No 349
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.79 E-value=0.0064 Score=55.21 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=67.9
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
+.+.-.....+.+.++|.... .....++|.|+.|+||||++..++..+...-..++-+.+..+..... ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~---------~~ 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG---------PN 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC---------SS
T ss_pred hhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc---------cc
Confidence 344444555566666665432 34578999999999999999999988766623333333111110000 00
Q ss_pred HHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEe
Q 015918 128 TLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 188 (398)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTs 188 (398)
....... .......+.+...++..|=.|+++++.+.+....+... ..|..+.+||
T Consensus 174 ~~~~~~~--~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT 228 (270)
T PF00437_consen 174 QIQIQTR--RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTT 228 (270)
T ss_dssp EEEEEEE--TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEE
T ss_pred eEEEEee--cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeee
Confidence 0000000 11112556677778888889999999877766664333 2355552444
No 350
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.79 E-value=0.0057 Score=53.82 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|-+.|.++- +...++.|.|++|+|||+++.+++.....+-..+.|++
T Consensus 4 ~LD~~l~gGi-~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGF-PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3444554433 56789999999999999999999987545555566765
No 351
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.79 E-value=0.0049 Score=62.10 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.++.+|+|.+|+||||+++.++..+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887643
No 352
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0015 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|+||+|+|||||++.+..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999876
No 353
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.78 E-value=0.01 Score=50.58 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++|-..|.++- +-...+.|-|+-|.|||.|++++++-.-.+-..+.+++
T Consensus 15 delDkrLGGGi-P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvs 63 (235)
T COG2874 15 DELDKRLGGGI-PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVS 63 (235)
T ss_pred HHHHhhccCCC-ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEE
Confidence 34555665554 67789999999999999999999999766666666765
No 354
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0022 Score=55.71 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHHhc----------cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 50 LVGVDSRIEEILSLLG----------VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 50 fvGR~~el~~l~~~L~----------~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+=|-+-.-+++.+... ....+.++-+.++||+|+|||-|++.++++....|
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4455555666665542 12226778899999999999999999998755443
No 355
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0023 Score=53.96 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
...+++|.|++|+||||+++.++..+......+.++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 456899999999999999999999876543334444
No 356
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.78 E-value=0.0019 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+|+|.|++|+||||||..+...+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~ 27 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNG 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999876443
No 357
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.78 E-value=0.0054 Score=60.23 Aligned_cols=92 Identities=13% Similarity=0.051 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
...+++|+|+.|+||||++..+.+.+......++-+.+..+ .... .+ .+.. ............+...+
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE----~~~~----~~-~q~~---v~~~~g~~f~~~lr~~L 308 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE----YQIE----GI-GQIQ---VNPKIGLTFAAGLRAIL 308 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee----eecC----CC-ceEE---EccccCccHHHHHHHHH
Confidence 44689999999999999999888876543223333321100 0000 00 0100 00011122556777888
Q ss_pred CCceEEEEEeCCCChHhHHHHHcc
Q 015918 151 TRKKVLIVFDDVNHPRQIEFLIGN 174 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~~~~~~l~~~ 174 (398)
+..|=+|++.++.+.+........
T Consensus 309 R~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 309 RQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred hcCCCEEEEeCCCCHHHHHHHHHH
Confidence 888999999999888765544433
No 358
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.77 E-value=0.002 Score=52.08 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=25.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceE
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY 104 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~ 104 (398)
+++.|+|+.|+|||||++.+++.+.++.-.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47899999999999999999999875543344
No 359
>PRK03839 putative kinase; Provisional
Probab=96.77 E-value=0.0012 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998863
No 360
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.77 E-value=0.047 Score=53.41 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=37.8
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..++|+...++.+...+.... .....+.|+|++|+||+++|+.+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a-~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIA-PSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 468999999999888776433 333557799999999999999987653
No 361
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.77 E-value=0.0025 Score=56.39 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
++..+++|.|++|+|||||++.++..+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 5678999999999999999999998876554
No 362
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.012 Score=54.13 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=39.7
Q ss_pred cccCcccccchhHHHHHHHhcc---------CCC--CCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 45 ETENKLVGVDSRIEEILSLLGV---------GLT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~---------~~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
..-.++-|-+...+++.+..-- ... ..++-|.++||+|+|||-||+.+++.....|
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f 155 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF 155 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc
Confidence 3444566677777777765421 000 4567899999999999999999998866555
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=96.76 E-value=0.005 Score=59.24 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
..+.++.++|++|+||||++..++..+..+ ...+..+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346899999999999999999999887666 33344443
No 364
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.76 E-value=0.0023 Score=59.90 Aligned_cols=49 Identities=33% Similarity=0.333 Sum_probs=40.9
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE 101 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~ 101 (398)
..++|+++.+..+...+..+ +.+.+.|++|+|||+||+.+++.+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34999999998888877543 47889999999999999999999876653
No 365
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.76 E-value=0.002 Score=64.95 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=53.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEeechhhhhcCCHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
..-+.++|.+..++.|...+... +.++++|++|+||||+++.+++.+... +....|+.+ +......++.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~ 97 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIR 97 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHH
Confidence 44567999999999988877642 479999999999999999999886433 366677653 3344555555
Q ss_pred HHHHHH
Q 015918 124 ELLSTL 129 (398)
Q Consensus 124 ~i~~~l 129 (398)
.+...+
T Consensus 98 ~v~~~~ 103 (637)
T PRK13765 98 TVPAGK 103 (637)
T ss_pred HHHHhc
Confidence 554433
No 366
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.76 E-value=0.0025 Score=52.34 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=18.4
Q ss_pred EEcCCCccHHHHHHHHHHHh
Q 015918 77 IWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 77 I~G~~G~GKTtLa~~~~~~~ 96 (398)
|.|+||+||||+|..+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 367
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0047 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....++|.|+.|+|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999988653
No 368
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.75 E-value=0.01 Score=50.81 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
...++.|.|++|+|||+++.+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988654
No 369
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.017 Score=59.76 Aligned_cols=105 Identities=15% Similarity=0.230 Sum_probs=66.8
Q ss_pred cCcccccchhHHHHHHHhccCC---CC--CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGL---TM--DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~---~~--~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 121 (398)
...++|.++.+..|.+.+..-. .. ....+.+.||.|+|||.||+.++..+.+..+..+-+. +.+.
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~ 630 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEF 630 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhh
Confidence 3558999999999999885211 12 4567889999999999999999999876665544443 1222
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCce-EEEEEeCCCC
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK-VLIVFDDVNH 164 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDd~~~ 164 (398)
.. ...+...... -........+...++.+| .+|+|||++.
T Consensus 631 ~e--vskligsp~g-yvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 631 QE--VSKLIGSPPG-YVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hh--hhhccCCCcc-cccchhHHHHHHHHhcCCceEEEEechhh
Confidence 21 1222111111 011114446667777776 4888999974
No 370
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.73 E-value=0.0035 Score=59.51 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.....+.|.|++|+|||+|.+.+.+.++.....+...
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 3456889999999999999999999887754444443
No 371
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.72 E-value=0.0079 Score=61.69 Aligned_cols=53 Identities=21% Similarity=0.141 Sum_probs=40.7
Q ss_pred chhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 54 DSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 54 ~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..-+..|-..|. ++- +..+++.|+|++|+|||||+.+++......-..++|+.
T Consensus 42 sTGi~~LD~lLg~GGi-p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 42 PTGSIALDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cCCcHHHHHhhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 344556666676 444 67889999999999999999998877656666678876
No 372
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.015 Score=55.25 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+..+-+.+.||+|.|||-|++.++-.....
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcce
Confidence 456778899999999999999998764333
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.70 E-value=0.0029 Score=52.06 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=30.5
Q ss_pred cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 53 VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 53 R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-...+++|.+++. + +++++.|++|+|||||+..+...
T Consensus 22 ~~~g~~~l~~~l~-----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 22 TGEGIEELKELLK-----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTTHHHHHHHHT-----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCcCHHHHHHHhc-----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 3466788888884 3 78999999999999999998754
No 374
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.70 E-value=0.013 Score=46.60 Aligned_cols=34 Identities=15% Similarity=-0.036 Sum_probs=26.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhc--cCcceEEEe
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAH 107 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~--~f~~~~~~~ 107 (398)
.++|+|++|+|||+.+..++..... ....+++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4789999999999999998887544 445666665
No 375
>PRK10436 hypothetical protein; Provisional
Probab=96.70 E-value=0.0038 Score=60.68 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.....++|+|+.|+||||++..+...+.... ..++.. -++... .+.. ..+.. ............+...
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~-~~i~Ti----EDPvE~---~l~g-i~Q~~---v~~~~g~~f~~~lr~~ 283 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQ-INICSV----EDPVEI---PLAG-INQTQ---IHPKAGLTFQRVLRAL 283 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCCC-CEEEEe----cCCccc---cCCC-cceEe---eCCccCcCHHHHHHHH
Confidence 3457999999999999999988777764432 222221 111000 0000 00110 0001112256777888
Q ss_pred hCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEe
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 188 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTs 188 (398)
++..|=+|++.++.+.+......... ..++.++||
T Consensus 284 LR~dPDvI~vGEIRD~eta~~al~AA----~TGHlVlsT 318 (462)
T PRK10436 284 LRQDPDVIMVGEIRDGETAEIAIKAA----QTGHLVLST 318 (462)
T ss_pred hcCCCCEEEECCCCCHHHHHHHHHHH----HcCCcEEEe
Confidence 88899999999998877665443332 122356665
No 376
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.68 E-value=0.0045 Score=53.44 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....++|.|+.|+|||||++.++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999999999998865
No 377
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.68 E-value=0.0076 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|+|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998764
No 378
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.68 E-value=0.0046 Score=57.38 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..+.+.+.... ++..+|.|+|++|+|||||+..+...+...-..+..+.
T Consensus 43 ~~l~~~~~~~~-~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 43 QELLDALLPHT-GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred HHHHHHHhhcC-CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34444443322 56789999999999999999999988776533344443
No 379
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0024 Score=54.89 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
++-+|+|.|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45789999999999999999999998766
No 380
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0015 Score=52.83 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+|.|.|++|+||||+++.+++++.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 58899999999999999999886444
No 381
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.01 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999853
No 382
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0031 Score=54.37 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+..+++|+|++|+|||||++.+...+.......+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 46679999999999999999999998755443445553
No 383
>PLN02674 adenylate kinase
Probab=96.67 E-value=0.013 Score=51.91 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....++|.|++|+||||+++.+++++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998764
No 384
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.65 E-value=0.017 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|+|.|++|+||||+|+.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998774
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.017 Score=56.50 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHhccCC-C--CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 51 VGVDSRIEEILSLLGVGL-T--MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~-~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
-++...+..|.+.+.... + ....+++|+|++|+||||++..++..+..+
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344555555555442111 1 456899999999999999999999876544
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0018 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+.++++|+||+|+|||||++.++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 356889999999999999999998764
No 387
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.65 E-value=0.0036 Score=57.95 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=41.4
Q ss_pred cccCcccccchhHHHHH---HHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceE
Q 015918 45 ETENKLVGVDSRIEEIL---SLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY 104 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~---~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~ 104 (398)
.....+||..+..+... +++.... -..+.+++.||+|+|||+||..+++.+..+.++..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred eccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 45678999998887744 3444433 34689999999999999999999999987766433
No 388
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.65 E-value=0.0068 Score=55.94 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=44.6
Q ss_pred cCcccccchhHHHHHHHhccCC---CCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 47 ENKLVGVDSRIEEILSLLGVGL---TMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~---~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...|+|-++.++++.+.+.... +.+.+++.+.||.|.|||||+..+.+.+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4589999999999999886322 2678999999999999999999998887555
No 389
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.64 E-value=0.017 Score=56.12 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=47.1
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh-ccCcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
...|-..-+..|-+.+.+ - .+..+++|.|.+|+|||+++..++.... .+...+.|++ ...+..++...++.
T Consensus 173 ~~~gi~tG~~~LD~~~~G-~-~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTNG-L-VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLA 244 (421)
T ss_pred CCcceeCCChhHHHHhcC-C-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 355666666667666652 2 4567899999999999999999997754 3333455655 12344555555544
Q ss_pred H
Q 015918 128 T 128 (398)
Q Consensus 128 ~ 128 (398)
.
T Consensus 245 ~ 245 (421)
T TIGR03600 245 S 245 (421)
T ss_pred H
Confidence 3
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.64 E-value=0.0073 Score=58.09 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999999998865
No 391
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.64 E-value=0.0014 Score=52.76 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.++|.||+|+|||||++.+++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999999875444
No 392
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.64 E-value=0.0021 Score=56.95 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred EEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 77 IWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 77 I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
|.||+|+||||+++.+.+.+......+..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEE
Confidence 6799999999999999998766654444444
No 393
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0091 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 394
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.61 E-value=0.0038 Score=52.12 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=26.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...+++.|+|++|+|||||+..+...+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 356789999999999999999999987664
No 395
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.60 E-value=0.0068 Score=59.81 Aligned_cols=49 Identities=22% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh-hccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI-SRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~-~~~f~~~~~~~ 107 (398)
..|-+.|.+.- ++.++++|.|++|+||||||.+++..- .+.-...+|++
T Consensus 8 ~gLD~il~GGl-p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 8 EGFDDISHGGL-PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hhHHHhcCCCC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34445555544 678899999999999999999998763 33245677776
No 396
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.60 E-value=0.0075 Score=56.11 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc------CcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~------f~~~~~~~ 107 (398)
...+-+.|.++- +...++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 88 ~~~lD~~l~GGi-~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 88 SKELDELLGGGI-ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred CHHHHHHhcCCc-cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 345555665544 667899999999999999999999774322 13577776
No 397
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.59 E-value=0.002 Score=54.54 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.59 E-value=0.0017 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+++|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998773
No 399
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.59 E-value=0.0021 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+..+.++|+||+|+|||||+..+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56789999999999999999998754
No 400
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.5 Score=42.14 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=35.4
Q ss_pred ceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHhc-CCCeeEEcCCC
Q 015918 153 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKEL 208 (398)
Q Consensus 153 ~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L 208 (398)
..=++|||+++. ......++..+-+-+++..+|++|.++ .+.+.. +.+..+.+++.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 345789999974 456777777776656677666666544 344333 34456666665
No 401
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.58 E-value=0.0028 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+++|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998875
No 402
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.22 Score=45.43 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=43.4
Q ss_pred CceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHhc-CCCeeEEcCCCChhhhHHHHHH
Q 015918 152 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKELVHVDALKLLNQ 219 (398)
Q Consensus 152 ~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~-~~~~~~~l~~L~~~e~~~Ll~~ 219 (398)
+++-++|||+++. ......++..+-+-+.+..+|++|.+. .+.+.. +.+..+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3455999999974 445677777776655666666666544 344433 4567788877 67777777753
No 403
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.015 Score=60.21 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=67.3
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCC
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN 134 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 134 (398)
....+|.+.+. ..++++|.|+.|+||||-.-+++....-.....+-+..-+.+ ...++...+...++....
T Consensus 53 ~~~~~i~~ai~-----~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRl----AArsvA~RvAeel~~~~G 123 (845)
T COG1643 53 AVRDEILKAIE-----QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRL----AARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHH-----hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHH----HHHHHHHHHHHHhCCCcC
Confidence 44555666663 456999999999999999999997743333334444422222 233444444455543210
Q ss_pred --------CC-CC--Cc-c---chHHHHHhhC-----CceEEEEEeCCCChHh-HHHHHcc----CCCCCCCcEEEEEeC
Q 015918 135 --------MN-KF--PN-I---GLNFQSKRLT-----RKKVLIVFDDVNHPRQ-IEFLIGN----LDWFASGSRILITAR 189 (398)
Q Consensus 135 --------~~-~~--~~-~---~~~~l~~~l~-----~~~~LlvlDd~~~~~~-~~~l~~~----l~~~~~~~~iliTsR 189 (398)
.+ .. .. . --..+.+.+. .+--+||||++++-.. .+.++.. +....+..+|||+|=
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 00 00 00 0 1122222222 2334899999985432 2222222 222234689999885
Q ss_pred Ch
Q 015918 190 DK 191 (398)
Q Consensus 190 ~~ 191 (398)
.-
T Consensus 204 Tl 205 (845)
T COG1643 204 TL 205 (845)
T ss_pred cc
Confidence 43
No 404
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.58 E-value=0.012 Score=59.19 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.++++|+|.+|+||||++..++..+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999877644
No 405
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.57 E-value=0.0091 Score=55.39 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~ 107 (398)
..+...|.++- +...++.|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 82 ~~lD~~l~GGi-~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGI-ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 44555565444 56788999999999999999999977432 112677876
No 406
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=96.57 E-value=0.1 Score=50.49 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=42.3
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....++|+...++++.+.+..-. +....|.|+|++|+||-.+|+.+.+.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA-~s~a~VLI~GESGtGKElvAr~IH~~ 187 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVA-PSDASVLITGESGTGKELVARAIHQA 187 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHhh
Confidence 457789999999999999887554 45567889999999999999998766
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.002 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.|+|.|++|+||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988
No 408
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0074 Score=53.67 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=38.8
Q ss_pred cccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 49 KLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
++=|-+..+++|.+...-+ ....++-|.++|++|.|||-||+.++++....
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 4567888889988876422 12456788899999999999999998774333
No 409
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.55 E-value=0.0036 Score=59.28 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=40.4
Q ss_pred CcccccchhHHHHHHHhccC---------C--CCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 48 NKLVGVDSRIEEILSLLGVG---------L--TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~---------~--~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
..++|.+...+.+..++... . .-.++.++++||+|+|||+||+.+++.+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45899999999988877431 0 01246789999999999999999999865443
No 410
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.54 E-value=0.0032 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+++|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 411
>PRK00625 shikimate kinase; Provisional
Probab=96.54 E-value=0.0022 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|+|++|+||||+++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988864
No 412
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0019 Score=53.02 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFF 93 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~ 93 (398)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 413
>PRK14527 adenylate kinase; Provisional
Probab=96.53 E-value=0.0025 Score=54.63 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|++|+||||+|+.+++.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998775
No 414
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0042 Score=51.33 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=60.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
...+++|.|+.|+|||||++.++..+.. ....+++.... .. ...... ....+..... -+..+...-.+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~-~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IA-KLPLEE----LRRRIGYVPQ-LSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-cc-cCCHHH----HHhceEEEee-CCHHHHHHHHHHHHH
Confidence 4468999999999999999999876532 33344443110 00 000011 1111110000 022222333445555
Q ss_pred CCceEEEEEeCCC---ChHhHHHHHccCCCC-CCCcEEEEEeCChhHHHh
Q 015918 151 TRKKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQALIN 196 (398)
Q Consensus 151 ~~~~~LlvlDd~~---~~~~~~~l~~~l~~~-~~~~~iliTsR~~~~~~~ 196 (398)
...+-++++|+.. +......+...+... ..+..++++|-+......
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6678899999984 333333333333211 224567777776655444
No 415
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.016 Score=50.17 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|+.|+|||||++.++....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4556899999999999999999987644
No 416
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.52 E-value=0.0055 Score=56.71 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=51.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCcc-chHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKR 149 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~ 149 (398)
....++|.|+.|+|||||++.++..+.... .++.+.+..+..... . ... .+............ ..+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~-~-----~~~-~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH-P-----NYV-HLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC-C-----CEE-EEEecCCCCCcCccCHHHHHHHH
Confidence 446899999999999999999987765433 233333221111100 0 000 00000000011111 45566667
Q ss_pred hCCceEEEEEeCCCChHhHHH
Q 015918 150 LTRKKVLIVFDDVNHPRQIEF 170 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~ 170 (398)
++..+-.|++|++...+.+..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~ 235 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDF 235 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHH
Confidence 788888999999987665543
No 417
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.52 E-value=0.039 Score=46.11 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.++.+|+|..|+|||||+..++-.
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh
Confidence 5689999999999999999988864
No 418
>PRK15453 phosphoribulokinase; Provisional
Probab=96.52 E-value=0.0043 Score=55.66 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+..+|+|.|.+|+||||+++.+.+.+........+++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~ 40 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVE 40 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEe
Confidence 45689999999999999999999987754433344443
No 419
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.51 E-value=0.0094 Score=60.59 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++...++|+|++|+|||||++-++.-+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999998765
No 420
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.51 E-value=0.0063 Score=55.65 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=44.5
Q ss_pred cccCcccccchhHHH---HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc
Q 015918 45 ETENKLVGVDSRIEE---ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE 101 (398)
Q Consensus 45 ~~~~~fvGR~~el~~---l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~ 101 (398)
.....|||..+..+. +.+++.+.. -..+.|++.||+|+|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk-~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGK-MAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCc-ccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 567789999887776 444555544 56688999999999999999999999877744
No 421
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.51 E-value=0.0089 Score=59.92 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
++...++|+|++|+|||||++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999865
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.51 E-value=0.0015 Score=55.61 Aligned_cols=22 Identities=18% Similarity=-0.100 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+++|+|+.|.||||+++.++-.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999843
No 423
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.50 E-value=0.0053 Score=54.48 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+...+++|.||.|+|||||.+.++.-
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999999874
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.50 E-value=0.024 Score=54.38 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++.++.++|++|+||||++..++..+..+...+..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4689999999999999999999988766544444443
No 425
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.49 E-value=0.11 Score=51.11 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..++|....+.++.+.+.... .....+.|.|.+|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-RSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-CcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 458998888888887775433 3445688999999999999988876533
No 426
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.49 E-value=0.0053 Score=61.64 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=58.0
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCC
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN 136 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 136 (398)
++.+.+.+. .....++|+|+.|+||||+...+.+.+... ...++.. -++. +..+..+ .+... . .
T Consensus 305 ~~~l~~~~~----~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~ti----Edpv---E~~~~~~-~q~~v--~-~ 368 (564)
T TIGR02538 305 KALFLEAIH----KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTA----EDPV---EINLPGI-NQVNV--N-P 368 (564)
T ss_pred HHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEe----cCCc---eecCCCc-eEEEe--c-c
Confidence 444544443 345789999999999999998888776433 2222221 0010 0000000 11100 0 0
Q ss_pred CCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHcc
Q 015918 137 KFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGN 174 (398)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~ 174 (398)
.........+...++..|=+|++.++.+.+........
T Consensus 369 ~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~a 406 (564)
T TIGR02538 369 KIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA 406 (564)
T ss_pred ccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHH
Confidence 11122566778888889999999999888766544333
No 427
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.49 E-value=0.023 Score=50.98 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=33.1
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++.+...+......++-++.++|.+|+||+..++.+++.+...
T Consensus 93 ~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~ 137 (344)
T KOG2170|consen 93 LVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG 137 (344)
T ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhc
Confidence 344445555555554677888999999999999999999885444
No 428
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0091 Score=52.76 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....+.|.||.|.|||||.+.++--
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999974
No 429
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.48 E-value=0.027 Score=58.57 Aligned_cols=34 Identities=18% Similarity=-0.050 Sum_probs=26.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
++++|+|++|+||||+++.+...+......+.++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5889999999999999999988776654334443
No 430
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.47 E-value=0.0024 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 431
>PRK14529 adenylate kinase; Provisional
Probab=96.47 E-value=0.012 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
|+|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998864
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.46 E-value=0.0028 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...+++|+|++|+|||||++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457899999999999999999998753
No 433
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.46 E-value=0.0044 Score=57.15 Aligned_cols=35 Identities=34% Similarity=0.409 Sum_probs=28.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+++++.|.||+||||+|..++-...++...+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 68999999999999999999988777665566655
No 434
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.45 E-value=0.0037 Score=52.36 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..+.|-|++|+|||+|..+.++.++++|...+-..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 68999999999999999999999999988666654
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.45 E-value=0.01 Score=60.81 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+....++|+|.+|+|||||++-+..-
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44568999999999999999998864
No 436
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.079 Score=43.68 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=70.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH-------------------------hhccCcceEEEe-----echh---------
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK-------------------------ISRRFEGSYFAH-----NVRE--------- 111 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~-------------------------~~~~f~~~~~~~-----~~~~--------- 111 (398)
....+.|+|++|+|||||...++-- ++.+.-..+|-+ .+..
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPle 114 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLE 114 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhh
Confidence 3456889999999999999877641 222222233322 0110
Q ss_pred hhh--cCCHHHHHHHHHHHHhcCCCCCCC------CccchHHHHHhhCCceEEEEEeCCC-C-----hHhHHHHHccCCC
Q 015918 112 AEE--TGKLADLRKELLSTLLNDGNMNKF------PNIGLNFQSKRLTRKKVLIVFDDVN-H-----PRQIEFLIGNLDW 177 (398)
Q Consensus 112 ~~~--~~~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~l~~~l~~~~~LlvlDd~~-~-----~~~~~~l~~~l~~ 177 (398)
+.. ..+..+....++...+........ .+++.-.+.+.+...|-+++-|+-- + -..+..++..+..
T Consensus 115 L~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr 194 (228)
T COG4181 115 LRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194 (228)
T ss_pred hcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh
Confidence 111 223344455555555443322222 2225566677788899999999862 1 2234444444332
Q ss_pred CCCCcEEEEEeCChhHHHhcC
Q 015918 178 FASGSRILITARDKQALINCG 198 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~~~~~ 198 (398)
..+..+++.|-++..+..+.
T Consensus 195 -e~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 195 -ERGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred -hcCceEEEEeCCHHHHHhhh
Confidence 45667777777776666554
No 437
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.45 E-value=0.0081 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....++|.|+.|+|||||++.++.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 445689999999999999999998654
No 438
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.45 E-value=0.0063 Score=55.06 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
.+..++.|.|++|+|||||+..+++.+......++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 567899999999999999999999998766544443
No 439
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0055 Score=50.45 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
.+..++.++|.+|+||||+|..+.+.+....-....
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 456799999999999999999999998777544433
No 440
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.43 E-value=0.0025 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999885
No 441
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.43 E-value=0.0032 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFF 93 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~ 93 (398)
....++|.|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44689999999999999999986
No 442
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.43 E-value=0.0029 Score=53.89 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.+.++|.||+|+||+|++..++......|
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 36899999999999999999988764444
No 443
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.42 E-value=0.0022 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++|+|++|+||||+++.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 444
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.42 E-value=0.012 Score=55.54 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=30.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh--hccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI--SRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~--~~~f~~~~~~~ 107 (398)
++++|.|.||+|||.||..+++.+ ........+++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 589999999999999999999998 66666677766
No 445
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.41 E-value=0.0061 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+|++.|+=|+|||||++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 455799999999999999999999985
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.41 E-value=0.0037 Score=42.27 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+.+|+|+.|+|||||...+..-+-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999998876543
No 447
>PRK13808 adenylate kinase; Provisional
Probab=96.41 E-value=0.011 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|+|.|+||+||||++..++..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998764
No 448
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.41 E-value=0.0051 Score=63.81 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.+.++|+||.|.|||||.+.++-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3478999999999999999999865
No 449
>PRK14530 adenylate kinase; Provisional
Probab=96.40 E-value=0.003 Score=55.23 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.|+|.|++|+||||+++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998876
No 450
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.40 E-value=0.013 Score=51.96 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=52.6
Q ss_pred HHHHhccCCccccCCCcchHHHHHHHHHHHHhccccccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHH
Q 015918 8 LTEVANLSGFNSHVIRPESKLIEEIVSEVLERLDDTFETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTA 87 (398)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTt 87 (398)
.+++..+.|.+=+-.. .-++.+.--+.+.+.-. ..-++.-...+...|.......+-+|+|.|++|+||||
T Consensus 27 ~~e~~~~~~ln~~~~l---~eV~~iylpL~~l~~~~------~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST 97 (283)
T COG1072 27 EEELKRLRGLNEPISL---DEVEDIYLPLSRLLQLY------VEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKST 97 (283)
T ss_pred HHHHHHhccCCCCCCH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHH
Confidence 3444445544333222 33444444444444333 23344445556666654443677889999999999999
Q ss_pred HHHHHHHHhhccCcc
Q 015918 88 IAGAFFSKISRRFEG 102 (398)
Q Consensus 88 La~~~~~~~~~~f~~ 102 (398)
+|+.+..-+...++.
T Consensus 98 ~ar~L~~ll~~~~~~ 112 (283)
T COG1072 98 TARILQALLSRWPES 112 (283)
T ss_pred HHHHHHHHHhhCCCC
Confidence 999999988777655
No 451
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.40 E-value=0.0043 Score=53.54 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..+.++++.|++|+||||++..+...+. ....+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~ 48 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID 48 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe
Confidence 5778899999999999999999988764 33344443
No 452
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.40 E-value=0.0028 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+-|+|+|.||+|||||+..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568899999999999999998663
No 453
>PRK13947 shikimate kinase; Provisional
Probab=96.39 E-value=0.0029 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.|+|.|++|+||||+++.+++.+.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999988643
No 454
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.39 E-value=0.011 Score=54.30 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=51.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC--cceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.+.++|+|+.|+||||+++.++..+.... ..++.+.+..+..... . ...... .. .......+.+...
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~-~--------~~v~~~-~~-~~~~~~~~~l~~a 200 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA-P--------NVVQLR-TS-DDAISMTRLLKAT 200 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC-C--------CEEEEE-ec-CCCCCHHHHHHHH
Confidence 35788999999999999999998876532 2233322111111000 0 000000 00 0011245677777
Q ss_pred hCCceEEEEEeCCCChHhHHHH
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFL 171 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l 171 (398)
++..|=.|++.++...+.+..+
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHH
Confidence 8888889999999877665543
No 455
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.39 E-value=0.0026 Score=54.99 Aligned_cols=24 Identities=21% Similarity=-0.057 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..+++|+|+.|+|||||++.++..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 368999999999999999999843
No 456
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.39 E-value=0.14 Score=50.31 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=36.8
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..++|....+..+.+.+.... .....+.|.|++|+||+++|+.+....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGK~~lA~~ih~~s 190 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIA-LSQASVLISGESGTGKELIARAIHYNS 190 (457)
T ss_pred cceecccHHHhHHHHHHHHHc-CCCcEEEEEcCCCccHHHHHHHHHHhC
Confidence 358888888888777665443 344578899999999999999987653
No 457
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.38 E-value=0.0098 Score=51.02 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=24.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..|+|.|+.|+||||+++.+.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 458
>PRK13764 ATPase; Provisional
Probab=96.38 E-value=0.011 Score=59.11 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=48.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT 151 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 151 (398)
...++|+|++|+||||+++.++..+..+...+..+.+..+...... ..+.. .............+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~--------i~q~~------~~~~~~~~~~~~lLR 322 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPE--------ITQYS------KLEGSMEETADILLL 322 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCc--------ceEEe------eccccHHHHHHHHHh
Confidence 3568999999999999999999887654322223322111111000 00000 000001112222356
Q ss_pred CceEEEEEeCCCChHhHHHH
Q 015918 152 RKKVLIVFDDVNHPRQIEFL 171 (398)
Q Consensus 152 ~~~~LlvlDd~~~~~~~~~l 171 (398)
.+|=.|++|++.+.+.++.+
T Consensus 323 ~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hCCCEEEECCCCCHHHHHHH
Confidence 67889999999888877654
No 459
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.38 E-value=0.0051 Score=53.44 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+.+.++|.|++|+|||+|+.++++.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred cCCEEEEEcCcccccchhhHHHHhccccc
Confidence 44678899999999999999999987543
No 460
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.034 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..++++.|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999764
No 461
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.37 E-value=0.0091 Score=55.06 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
....+++|.|++|+|||||+..+...+......+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i 68 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVI 68 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5678999999999999999999998866553333333
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.37 E-value=0.0027 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++++|.||+|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999998754
No 463
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.028 Score=49.01 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=33.2
Q ss_pred ccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 52 GVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 52 GR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|-+..+++|.+.+.- -....++-+.++||+|.|||-||+.++++.
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 446666776665431 112567889999999999999999998763
No 464
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.077 Score=49.67 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+-|..+||||.|||-+|++++.+-
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~S 408 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHS 408 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhc
Confidence 567889999999999999999999873
No 465
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.35 E-value=0.0039 Score=54.56 Aligned_cols=24 Identities=17% Similarity=-0.093 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
..++++|+|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999987
No 466
>PRK13949 shikimate kinase; Provisional
Probab=96.34 E-value=0.0035 Score=52.50 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|.|++|+||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.34 E-value=0.012 Score=58.51 Aligned_cols=53 Identities=26% Similarity=0.230 Sum_probs=40.3
Q ss_pred chhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 54 DSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
..-+..|-+.|.++- +..++++|.|++|+|||+|+.+++.....+ ...+.|++
T Consensus 14 ~TGI~~LD~~l~GG~-p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 14 PTGIEGFDDITHGGL-PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred cCCchhHHHhhcCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 444556666676544 678899999999999999999999875444 55677776
No 468
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.34 E-value=0.0035 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 015918 75 LGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~ 95 (398)
|+|.|++|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999976
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.34 E-value=0.0062 Score=56.40 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+..++++.||+|+||||++..++..+...-..+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5689999999999999999999998776544444443
No 470
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.34 E-value=0.0095 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+|+|.|+.|+||||+++.+++.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g 28 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARG 28 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999986543
No 471
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.34 E-value=0.0041 Score=53.40 Aligned_cols=25 Identities=40% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+++|.|.+|+||||+|+.++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 472
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.33 E-value=0.04 Score=58.16 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=138.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccC----cceEEEeech-hhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF----EGSYFAHNVR-EAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNF 145 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f----~~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 145 (398)
...-+.|.|.+|+||||++..++-...++. ...+++.... ...........+.+.+........ ........
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~---~~~~~~~~ 297 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG---IAKQLIEA 297 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC---CcchhhHH
Confidence 345788999999999999999987644432 2223332110 000011111022223333322211 11112222
Q ss_pred HHHhhCCceEEEEEeCCCChH------hHHHHHccCCCCCCCcEEEEEeCChhHHHhcCCCeeEEcCCCChhhhHHHHHH
Q 015918 146 QSKRLTRKKVLIVFDDVNHPR------QIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQ 219 (398)
Q Consensus 146 l~~~l~~~~~LlvlDd~~~~~------~~~~l~~~l~~~~~~~~iliTsR~~~~~~~~~~~~~~~l~~L~~~e~~~Ll~~ 219 (398)
....+...++++++|.++... .... ...+...-+...+|+|+|.............+++..+.++....++..
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHH
Confidence 246778899999999997532 1222 122222235778999999876555555566677777777766655442
Q ss_pred hh-----cCC-CCCC-c---chHH---HHHHHHHHcCCChHHHHHHHHHhcc------CCHHHHHHHHHHhccCChhhHH
Q 015918 220 CA-----FGR-DHPD-A---SYIE---LTHEAIKYAQGVPIALKILGRFLFR------KRKEVWENAISKLEMVPQMEIQ 280 (398)
Q Consensus 220 ~~-----~~~-~~~~-~---~~~~---~~~~i~~~~~g~Pl~i~~l~~~l~~------~~~~~~~~~~~~l~~~~~~~v~ 280 (398)
.. ... .... . .... -.....+....+|+.|.+.|..-.. ...+-+....+.+-...+..=.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~ 456 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRG 456 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhh
Confidence 11 010 0000 0 0000 0122233347889999888754431 2233444443333221111111
Q ss_pred HHHHHhHhcCch-HHHH-HHHHhhcCcCCc---------ChHHHHHHHHhc-Ccc-----ccccHHHHh---hccCeeec
Q 015918 281 EVLKISYDGLDD-KEKN-IFLDIACFLVGE---------DRDIVTKYLNAC-EFF-----ATSGIEVLV---DKSLITIS 340 (398)
Q Consensus 281 ~~l~~~~~~L~~-~~~~-~l~~la~~~~~~---------~~~~l~~~~~~~-~~~-----~~~~l~~L~---~~~Ll~~~ 340 (398)
......+..+.. .... ++..++.+-... ..+.+....... ... ....+..+. +.|++...
T Consensus 457 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~~~~~~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~glL~~~ 536 (824)
T COG5635 457 IKWSKTYAKLTTDQQDKWLLQLLAALLFEKLDEEFTEFLLKDDIVDYLLNQAEDEDDLIALALALEALLKLLQHGLLVER 536 (824)
T ss_pred hcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHhcchHHHH
Confidence 123445555543 3444 666666553221 111111111110 000 112344444 78888877
Q ss_pred cCCceEe-cHHHHHHHHHH
Q 015918 341 EYNKIRM-HDLMRNMGREI 358 (398)
Q Consensus 341 ~~~~~~~-H~lir~~~~~~ 358 (398)
+.+.|.+ |..+++|-...
T Consensus 537 ~~~~~~F~~~tFqey~~a~ 555 (824)
T COG5635 537 AKIVYAFAHATFQEYFAAK 555 (824)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 7777777 77788886544
No 473
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.33 E-value=0.016 Score=58.88 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+...++|+|++|+|||||++.++.-
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999999865
No 474
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.31 E-value=0.016 Score=51.62 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
....+++|.|++|+|||+++.+++.....+ -..+.|++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 456799999999999999999998875544 45567765
No 475
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.31 E-value=0.0094 Score=59.72 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=42.4
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
..++..+.|.+-.+.|.++..... ....+|+|+|++|+||||+++.++..+..
T Consensus 366 ~~pP~~f~rpeV~~iL~~~~~~r~-~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 366 LEIPEWFSFPEVVAELRRTYPPRH-KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCChhhcHHHHHHHHHHHhcccc-CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 445567778888887777766554 55668999999999999999999998765
No 476
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.31 E-value=0.0075 Score=55.62 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.++++++|-||+||||++..++-........+.-++ .++..++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhc
Confidence 478999999999999999998888777765555555 555556555544
No 477
>PLN02200 adenylate kinase family protein
Probab=96.30 E-value=0.0043 Score=54.89 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+..++|.|++|+||||+|+.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998764
No 478
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.27 E-value=0.042 Score=47.63 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++..
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45568999999999999999999864
No 479
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.26 E-value=0.03 Score=50.20 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccccc---cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 29 IEEIVSEVLERLDDTF---ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 29 i~~~~~~~~~~l~~~~---~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
++.......++-+... +..+.|+|-..-.+.+.. +.... ...+.+.++|.+|+|||+-+.++++. .+..+.
T Consensus 50 ~~a~ia~~le~~~~q~~~~~~~~~~l~tkt~r~~~~~-~~~A~-k~g~l~~vyg~~g~gKt~a~~~y~~s----~p~~~l 123 (297)
T COG2842 50 NEAKIAAFLEKKGVQAALEKLAPDFLETKTVRRIFFR-TRPAS-KTGSLVVVYGYAGLGKTQAAKNYAPS----NPNALL 123 (297)
T ss_pred HHHHHHHHHcCCCcccccccccccccccchhHhHhhh-hhhhh-hcCceEEEeccccchhHHHHHhhccc----Ccccee
Confidence 4444444444433332 567788887765433332 22221 23348999999999999999999855 343344
Q ss_pred EeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC
Q 015918 106 AHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH 164 (398)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 164 (398)
+. .++..+...++..+.......... ........+...+.+..-+|+.|+.+.
T Consensus 124 ~~----~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 124 IE----ADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred ec----CChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCcceeeeehhhc
Confidence 44 555556666666666555443321 112244455555677777999999864
No 480
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.26 E-value=0.051 Score=57.65 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.+++|+|.+|+||||+++.+...+...
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~ 389 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAA 389 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 477899999999999988877666544
No 481
>PRK06761 hypothetical protein; Provisional
Probab=96.25 E-value=0.006 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.++++|.|++|+||||+++.+++.+...
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 3589999999999999999999997654
No 482
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.027 Score=49.87 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....++|.|+.|+|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998763
No 483
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.24 E-value=0.0041 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
|+|+|++|+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 484
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.24 E-value=0.023 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+.|.||+|+|||||++.+.-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcc
Confidence 3457899999999999999998754
No 485
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.24 E-value=0.022 Score=51.79 Aligned_cols=28 Identities=25% Similarity=0.513 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.....++|.|+.|+|||||++.++.-..
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 4556899999999999999999987653
No 486
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.24 E-value=0.006 Score=52.17 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=31.9
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.++|.+.....+.-...+ ..-+++.|++|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG-----~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG-----GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC-----C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC-----CCCeEEECCCCCCHHHHHHHHHHh
Confidence 4677887777777666643 358999999999999999998864
No 487
>PRK13768 GTPase; Provisional
Probab=96.23 E-value=0.0072 Score=54.21 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+++|.|++|+||||++..+...+......+..+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 57899999999999999999988766554455543
No 488
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.23 E-value=0.0038 Score=51.95 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 015918 75 LGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~ 95 (398)
|+|+|.+|+|||||+..+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 489
>PLN02459 probable adenylate kinase
Probab=96.23 E-value=0.025 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.++|.|+||+||||++..+++.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47778999999999999998875
No 490
>PRK14526 adenylate kinase; Provisional
Probab=96.23 E-value=0.021 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++|.|++|+||||+++.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998664
No 491
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.23 E-value=0.007 Score=54.72 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+++.|.|++|+|||||+..++..++++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 4799999999999999999999998887 455554
No 492
>PRK10646 ADP-binding protein; Provisional
Probab=96.23 E-value=0.0082 Score=48.90 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=32.9
Q ss_pred chhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 54 DSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++.+++.+.|.... ....+|.+.|.=|+|||||++.+++.+.
T Consensus 11 ~~~t~~l~~~la~~l-~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKAC-DGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 455666666665433 4456899999999999999999999853
No 493
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.22 E-value=0.0053 Score=57.11 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=37.5
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+-..++|.+...+.+.-.+.. .+...+++.|++|+||||+|+.+..-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~---~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAID---PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhc---cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 345789999998887754432 233569999999999999999998875
No 494
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0051 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|+|++|+|||||++.++--
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 45568999999999999999999864
No 495
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.21 E-value=0.038 Score=53.86 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=46.2
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
...|-..-+..|-+.+. +- .+..+++|.|.+|+|||+++.+++..... .-..+.|++ ...+..++...+..
T Consensus 174 ~~~gi~tG~~~LD~~~~-G~-~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S------lEm~~~~i~~R~~~ 245 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS-GL-QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS------LEMSAEQLAMRMLS 245 (434)
T ss_pred CCCcccCCchhhHhhcC-CC-CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe------CcCCHHHHHHHHHH
Confidence 34455556666666553 22 45679999999999999999999987543 233456655 23344555555544
Q ss_pred H
Q 015918 128 T 128 (398)
Q Consensus 128 ~ 128 (398)
.
T Consensus 246 ~ 246 (434)
T TIGR00665 246 S 246 (434)
T ss_pred H
Confidence 3
No 496
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.21 E-value=0.02 Score=50.93 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+.+|.|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999998743
No 497
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.21 E-value=0.0057 Score=57.11 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=39.9
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+-+.+||.++....|...+.. ++..-++|.|+.|+||||+|+.+++.+.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~---p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID---PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC---CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 446789999888888777765 4566788999999999999999987643
No 498
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.20 E-value=0.0057 Score=53.85 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.++..+++.|++|+||||+++.+...+..+......+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYvi 53 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVI 53 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEE
Confidence 5667888999999999999999998877776543333
No 499
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.20 E-value=0.022 Score=57.62 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+....++|+|++|+|||||++.++..
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999875
No 500
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.19 E-value=0.027 Score=61.04 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=27.0
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++|.+.+.. .++++|+|++|+||||.+=+++....
T Consensus 73 ~~Il~~l~~-----~~vvii~g~TGSGKTTqlPq~lle~~ 107 (1283)
T TIGR01967 73 EDIAEAIAE-----NQVVIIAGETGSGKTTQLPKICLELG 107 (1283)
T ss_pred HHHHHHHHh-----CceEEEeCCCCCCcHHHHHHHHHHcC
Confidence 555565533 45999999999999999988887643
Done!