Query 015918
Match_columns 398
No_of_seqs 140 out of 1838
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 04:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.9E-38 1.3E-42 313.1 19.8 299 51-363 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.5E-35 1.5E-39 318.1 25.3 306 43-362 119-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-34 3.9E-39 291.6 23.0 299 43-359 119-449 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.4E-33 4.6E-38 286.6 22.4 278 48-354 128-435 (1221)
5 2qen_A Walker-type ATPase; unk 99.9 3E-21 1E-25 181.0 21.2 290 45-356 9-349 (350)
6 2fna_A Conserved hypothetical 99.9 3.9E-20 1.4E-24 173.7 22.5 286 45-355 10-356 (357)
7 1w5s_A Origin recognition comp 99.8 3.7E-18 1.3E-22 163.6 20.4 286 45-340 19-371 (412)
8 2qby_B CDC6 homolog 3, cell di 99.7 2.3E-15 7.8E-20 142.8 26.9 279 46-340 18-339 (384)
9 1fnn_A CDC6P, cell division co 99.7 2E-15 6.7E-20 143.4 25.2 305 46-361 15-386 (389)
10 2qby_A CDC6 homolog 1, cell di 99.7 8.6E-16 2.9E-20 145.6 20.9 284 45-340 17-348 (386)
11 2v1u_A Cell division control p 99.7 8.4E-15 2.9E-19 138.9 22.4 284 46-340 17-351 (387)
12 1njg_A DNA polymerase III subu 99.6 1.8E-13 6.2E-18 120.8 18.2 198 46-256 21-231 (250)
13 2chg_A Replication factor C sm 99.5 9E-13 3.1E-17 114.6 18.2 189 45-255 14-206 (226)
14 1sxj_B Activator 1 37 kDa subu 99.4 8.8E-12 3E-16 115.0 18.2 185 46-254 19-211 (323)
15 1iqp_A RFCS; clamp loader, ext 99.3 5.3E-11 1.8E-15 109.9 19.1 219 46-288 23-248 (327)
16 2chq_A Replication factor C sm 99.3 1.8E-10 6.1E-15 106.0 19.6 186 46-255 15-206 (319)
17 1hqc_A RUVB; extended AAA-ATPa 99.3 3.5E-10 1.2E-14 104.3 21.4 258 45-345 9-303 (324)
18 1jr3_A DNA polymerase III subu 99.3 2.4E-10 8.4E-15 107.5 19.3 197 46-255 14-223 (373)
19 3pfi_A Holliday junction ATP-d 99.2 1.9E-09 6.5E-14 100.1 21.3 258 46-347 27-320 (338)
20 3te6_A Regulatory protein SIR3 99.2 1.1E-10 3.7E-15 106.3 10.3 173 45-221 17-211 (318)
21 1jbk_A CLPB protein; beta barr 99.1 2.3E-10 8E-15 96.8 9.9 50 46-98 20-69 (195)
22 1sxj_D Activator 1 41 kDa subu 99.1 5.7E-09 1.9E-13 97.3 19.5 196 45-254 34-236 (353)
23 3uk6_A RUVB-like 2; hexameric 99.1 3.7E-09 1.3E-13 99.3 16.6 204 47-255 43-305 (368)
24 3bos_A Putative DNA replicatio 99.1 8.5E-10 2.9E-14 97.0 11.4 176 47-256 27-220 (242)
25 1sxj_A Activator 1 95 kDa subu 99.0 1.1E-08 3.9E-13 100.3 18.9 193 46-253 37-252 (516)
26 3pvs_A Replication-associated 99.0 1E-08 3.4E-13 98.4 16.8 182 45-256 23-218 (447)
27 3h4m_A Proteasome-activating n 99.0 5.5E-09 1.9E-13 94.5 13.4 185 45-255 14-233 (285)
28 3eie_A Vacuolar protein sortin 98.9 4.6E-08 1.6E-12 90.0 18.4 183 47-256 17-231 (322)
29 1sxj_E Activator 1 40 kDa subu 98.9 1.3E-08 4.6E-13 94.9 14.3 200 46-256 12-240 (354)
30 2z4s_A Chromosomal replication 98.9 1.1E-08 3.9E-13 98.1 14.0 186 48-256 105-309 (440)
31 3u61_B DNA polymerase accessor 98.9 2.1E-08 7.2E-13 92.4 15.3 183 46-256 24-219 (324)
32 2qp9_X Vacuolar protein sortin 98.9 1.1E-07 3.7E-12 88.7 19.8 186 46-255 49-263 (355)
33 1d2n_A N-ethylmaleimide-sensit 98.9 9.3E-08 3.2E-12 85.8 18.7 171 47-245 32-229 (272)
34 1a5t_A Delta prime, HOLB; zinc 98.9 6.9E-08 2.4E-12 89.3 18.1 181 54-252 8-204 (334)
35 3d8b_A Fidgetin-like protein 1 98.9 8.8E-08 3E-12 89.5 18.1 185 45-256 81-298 (357)
36 1sxj_C Activator 1 40 kDa subu 98.9 2.9E-07 9.8E-12 85.4 20.5 184 47-252 24-211 (340)
37 1in4_A RUVB, holliday junction 98.8 6.8E-07 2.3E-11 82.6 22.7 265 46-348 23-318 (334)
38 2qz4_A Paraplegin; AAA+, SPG7, 98.8 5E-08 1.7E-12 86.9 14.6 186 48-256 6-225 (262)
39 1l8q_A Chromosomal replication 98.8 2.7E-07 9.2E-12 85.0 19.5 182 48-254 11-209 (324)
40 1xwi_A SKD1 protein; VPS4B, AA 98.8 3.4E-07 1.2E-11 84.2 19.5 186 48-256 12-226 (322)
41 3syl_A Protein CBBX; photosynt 98.8 2.1E-08 7.3E-13 91.7 11.3 169 49-241 32-235 (309)
42 2zan_A Vacuolar protein sortin 98.8 4.1E-07 1.4E-11 87.4 20.1 189 45-256 131-348 (444)
43 3vfd_A Spastin; ATPase, microt 98.8 1.2E-07 4E-12 89.8 15.9 184 47-255 114-328 (389)
44 2p65_A Hypothetical protein PF 98.8 2.3E-08 8E-13 83.9 9.8 50 46-98 20-69 (187)
45 3b9p_A CG5977-PA, isoform A; A 98.7 2.4E-07 8.2E-12 84.2 15.9 185 45-255 18-235 (297)
46 3cf0_A Transitional endoplasmi 98.7 9.2E-07 3.2E-11 80.5 17.3 176 48-248 15-223 (301)
47 3pxg_A Negative regulator of g 98.7 1.8E-07 6.1E-12 90.6 12.8 148 47-221 179-338 (468)
48 3hu3_A Transitional endoplasmi 98.6 4.6E-07 1.6E-11 87.8 14.6 181 48-254 204-416 (489)
49 1ofh_A ATP-dependent HSL prote 98.6 3.3E-07 1.1E-11 83.6 12.5 51 48-98 15-76 (310)
50 3n70_A Transport activator; si 98.6 5.8E-08 2E-12 78.3 5.9 47 49-96 2-48 (145)
51 4fcw_A Chaperone protein CLPB; 98.6 8.4E-07 2.9E-11 81.0 14.4 60 48-107 17-82 (311)
52 1qvr_A CLPB protein; coiled co 98.6 2.1E-07 7.2E-12 96.8 11.4 154 46-221 168-345 (854)
53 1ojl_A Transcriptional regulat 98.6 6.8E-07 2.3E-11 81.4 12.8 48 48-96 2-49 (304)
54 4b4t_J 26S protease regulatory 98.5 2E-06 6.7E-11 80.3 15.8 171 48-246 148-354 (405)
55 1r6b_X CLPA protein; AAA+, N-t 98.5 7.3E-07 2.5E-11 91.8 13.0 151 47-221 185-362 (758)
56 3pxi_A Negative regulator of g 98.5 7.7E-07 2.6E-11 91.5 12.4 148 47-221 179-338 (758)
57 4b4t_L 26S protease subunit RP 98.5 2.2E-06 7.4E-11 81.3 14.0 172 48-246 181-387 (437)
58 2gno_A DNA polymerase III, gam 98.5 1.3E-06 4.5E-11 79.3 12.0 145 52-221 1-152 (305)
59 2bjv_A PSP operon transcriptio 98.5 2E-06 6.9E-11 76.6 13.0 50 48-98 6-55 (265)
60 4b4t_H 26S protease regulatory 98.4 4.4E-06 1.5E-10 79.1 15.7 170 49-245 210-414 (467)
61 1lv7_A FTSH; alpha/beta domain 98.4 2.5E-06 8.5E-11 75.7 13.1 184 46-254 10-226 (257)
62 3ec2_A DNA replication protein 98.4 1.1E-06 3.7E-11 73.5 9.4 45 53-97 19-63 (180)
63 4b4t_K 26S protease regulatory 98.4 2.9E-06 9.9E-11 80.3 12.1 51 48-99 172-233 (428)
64 2c9o_A RUVB-like 1; hexameric 98.3 2.5E-05 8.5E-10 75.3 18.7 97 155-254 297-411 (456)
65 4b4t_I 26S protease regulatory 98.3 5.4E-06 1.9E-10 77.7 13.0 171 48-245 182-387 (437)
66 2r62_A Cell division protease 98.3 7.2E-07 2.5E-11 79.7 6.4 176 46-247 9-219 (268)
67 2ce7_A Cell division protein F 98.3 1.1E-05 3.7E-10 77.6 14.6 180 48-252 16-228 (476)
68 4b4t_M 26S protease regulatory 98.3 4.8E-06 1.6E-10 78.9 11.2 179 48-253 181-395 (434)
69 3co5_A Putative two-component 98.3 2.8E-07 9.6E-12 74.0 2.3 48 48-96 4-51 (143)
70 3pxi_A Negative regulator of g 98.2 4.9E-06 1.7E-10 85.5 11.8 152 47-221 490-675 (758)
71 3cf2_A TER ATPase, transitiona 98.2 7.4E-06 2.5E-10 83.4 12.3 180 48-252 204-414 (806)
72 3t15_A Ribulose bisphosphate c 98.2 2E-05 7E-10 71.2 13.8 30 70-99 34-63 (293)
73 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 4.1E-05 1.4E-09 74.1 13.6 46 48-98 22-67 (500)
74 1ixz_A ATP-dependent metallopr 98.1 0.00011 3.7E-09 64.8 15.3 179 48-252 16-228 (254)
75 2w58_A DNAI, primosome compone 98.1 1.2E-05 4E-10 68.4 8.6 62 46-107 23-89 (202)
76 1um8_A ATP-dependent CLP prote 98.1 3.5E-05 1.2E-09 72.3 12.5 49 49-97 22-97 (376)
77 3m6a_A ATP-dependent protease 98.0 5.2E-05 1.8E-09 74.6 13.6 158 49-221 82-266 (543)
78 1iy2_A ATP-dependent metallopr 98.0 0.00011 3.8E-09 65.8 14.6 182 45-252 37-252 (278)
79 2dhr_A FTSH; AAA+ protein, hex 98.0 9.8E-05 3.4E-09 71.4 15.0 179 45-252 28-243 (499)
80 2kjq_A DNAA-related protein; s 98.0 5.6E-06 1.9E-10 66.8 4.4 37 71-107 35-71 (149)
81 3hws_A ATP-dependent CLP prote 97.9 3.1E-05 1.1E-09 72.3 9.3 49 49-97 16-76 (363)
82 1ypw_A Transitional endoplasmi 97.9 7.8E-05 2.7E-09 76.8 11.8 50 48-98 204-264 (806)
83 1r6b_X CLPA protein; AAA+, N-t 97.8 3.6E-05 1.2E-09 79.1 8.9 51 47-97 457-513 (758)
84 1qvr_A CLPB protein; coiled co 97.8 0.00017 5.7E-09 75.1 12.3 52 48-99 558-615 (854)
85 2qgz_A Helicase loader, putati 97.7 0.00022 7.5E-09 64.8 10.3 60 48-107 124-188 (308)
86 1jr3_D DNA polymerase III, del 97.6 0.002 6.7E-08 59.4 16.3 157 70-252 16-184 (343)
87 2x8a_A Nuclear valosin-contain 97.6 0.0016 5.5E-08 58.0 15.0 125 74-221 46-191 (274)
88 2cvh_A DNA repair and recombin 97.6 0.00028 9.7E-09 60.4 9.6 45 59-107 8-52 (220)
89 1g5t_A COB(I)alamin adenosyltr 97.5 0.00019 6.4E-09 60.0 6.8 120 72-192 28-164 (196)
90 1rz3_A Hypothetical protein rb 97.4 0.00028 9.5E-09 59.8 6.9 47 52-98 2-48 (201)
91 2r44_A Uncharacterized protein 97.4 0.00017 6E-09 66.2 5.5 48 47-99 26-73 (331)
92 2b8t_A Thymidine kinase; deoxy 97.4 9.5E-05 3.2E-09 63.6 3.4 38 70-107 10-47 (223)
93 3cf2_A TER ATPase, transitiona 97.4 0.0002 6.9E-09 72.9 6.3 50 49-98 478-537 (806)
94 3hr8_A Protein RECA; alpha and 97.4 0.00092 3.1E-08 61.7 10.1 80 27-107 9-96 (356)
95 1ex7_A Guanylate kinase; subst 97.2 0.00013 4.5E-09 60.9 2.7 28 73-100 2-29 (186)
96 2orw_A Thymidine kinase; TMTK, 97.2 5.8E-05 2E-09 63.1 0.4 34 73-106 4-37 (184)
97 1xp8_A RECA protein, recombina 97.2 0.0019 6.5E-08 59.9 10.5 82 25-107 21-109 (366)
98 3jvv_A Twitching mobility prot 97.2 0.00086 2.9E-08 62.0 8.0 109 71-191 122-231 (356)
99 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00025 8.6E-09 64.0 4.0 26 70-95 121-146 (331)
100 3bh0_A DNAB-like replicative h 97.1 0.0018 6.1E-08 58.9 9.6 55 51-107 49-103 (315)
101 3sr0_A Adenylate kinase; phosp 97.1 0.00074 2.5E-08 57.4 6.5 23 74-96 2-24 (206)
102 1tue_A Replication protein E1; 97.1 0.00044 1.5E-08 58.1 4.8 43 54-98 42-84 (212)
103 3io5_A Recombination and repai 97.1 0.00081 2.8E-08 60.5 6.6 34 74-107 30-65 (333)
104 1qhx_A CPT, protein (chloramph 97.1 0.0003 1E-08 58.2 3.6 25 73-97 4-28 (178)
105 1v5w_A DMC1, meiotic recombina 97.1 0.002 6.8E-08 59.4 9.4 50 57-107 108-163 (343)
106 3umf_A Adenylate kinase; rossm 97.1 0.0024 8.4E-08 54.5 9.2 27 70-96 27-53 (217)
107 3dzd_A Transcriptional regulat 97.1 0.018 6.1E-07 53.5 15.7 52 47-99 128-179 (368)
108 3c8u_A Fructokinase; YP_612366 97.0 0.00064 2.2E-08 57.9 5.0 42 56-98 7-48 (208)
109 4a1f_A DNAB helicase, replicat 97.0 0.0022 7.4E-08 58.7 8.7 72 48-127 24-95 (338)
110 1ny5_A Transcriptional regulat 96.9 0.025 8.7E-07 52.9 15.6 48 48-96 137-184 (387)
111 1nks_A Adenylate kinase; therm 96.9 0.00093 3.2E-08 55.8 5.1 27 73-99 2-28 (194)
112 3uie_A Adenylyl-sulfate kinase 96.9 0.0011 3.7E-08 56.0 5.5 29 70-98 23-51 (200)
113 3kb2_A SPBC2 prophage-derived 96.9 0.00057 2E-08 56.0 3.7 25 73-97 2-26 (173)
114 1vma_A Cell division protein F 96.9 0.00098 3.3E-08 60.3 5.2 38 70-107 102-139 (306)
115 3tlx_A Adenylate kinase 2; str 96.9 0.00091 3.1E-08 58.4 4.8 41 55-96 13-53 (243)
116 1g8p_A Magnesium-chelatase 38 96.8 0.00053 1.8E-08 63.3 3.4 49 46-97 22-70 (350)
117 1kht_A Adenylate kinase; phosp 96.8 0.0012 4E-08 55.1 5.1 27 73-99 4-30 (192)
118 1ly1_A Polynucleotide kinase; 96.8 0.0007 2.4E-08 55.9 3.7 22 73-94 3-24 (181)
119 1odf_A YGR205W, hypothetical 3 96.8 0.0015 5.2E-08 58.6 6.1 29 70-98 29-57 (290)
120 3vaa_A Shikimate kinase, SK; s 96.8 0.00079 2.7E-08 56.8 4.0 26 71-96 24-49 (199)
121 2yvu_A Probable adenylyl-sulfa 96.8 0.0014 4.8E-08 54.5 5.4 37 70-106 11-47 (186)
122 2rhm_A Putative kinase; P-loop 96.8 0.00085 2.9E-08 56.1 4.0 26 71-96 4-29 (193)
123 3tau_A Guanylate kinase, GMP k 96.8 0.00069 2.4E-08 57.7 3.5 29 70-98 6-34 (208)
124 1kgd_A CASK, peripheral plasma 96.8 0.00078 2.7E-08 55.9 3.7 26 72-97 5-30 (180)
125 1gvn_B Zeta; postsegregational 96.8 0.0015 5.1E-08 58.6 5.7 28 70-97 31-58 (287)
126 3trf_A Shikimate kinase, SK; a 96.8 0.00085 2.9E-08 55.8 3.7 25 72-96 5-29 (185)
127 3a00_A Guanylate kinase, GMP k 96.8 0.00075 2.6E-08 56.3 3.4 28 73-100 2-29 (186)
128 1u94_A RECA protein, recombina 96.8 0.003 1E-07 58.3 7.8 81 26-107 11-98 (356)
129 2zr9_A Protein RECA, recombina 96.8 0.0028 9.7E-08 58.4 7.5 80 27-107 10-96 (349)
130 3upu_A ATP-dependent DNA helic 96.7 0.0082 2.8E-07 57.6 11.0 49 55-107 32-81 (459)
131 2q6t_A DNAB replication FORK h 96.7 0.0069 2.4E-07 57.9 10.3 70 50-127 180-250 (444)
132 2r6a_A DNAB helicase, replicat 96.7 0.0034 1.1E-07 60.3 8.1 55 51-107 184-239 (454)
133 3e1s_A Exodeoxyribonuclease V, 96.7 0.009 3.1E-07 58.9 11.3 36 72-107 204-239 (574)
134 1zp6_A Hypothetical protein AT 96.7 0.00092 3.1E-08 55.8 3.6 26 70-95 7-32 (191)
135 2dr3_A UPF0273 protein PH0284; 96.7 0.0016 5.4E-08 56.7 5.2 38 70-107 21-58 (247)
136 1kag_A SKI, shikimate kinase I 96.7 0.00091 3.1E-08 54.9 3.4 25 73-97 5-29 (173)
137 3lw7_A Adenylate kinase relate 96.7 0.00092 3.2E-08 54.7 3.5 22 73-95 2-23 (179)
138 3t61_A Gluconokinase; PSI-biol 96.7 0.00098 3.3E-08 56.3 3.6 25 72-96 18-42 (202)
139 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0013 4.5E-08 56.6 4.4 38 70-107 21-58 (235)
140 3ney_A 55 kDa erythrocyte memb 96.7 0.00094 3.2E-08 56.1 3.2 27 71-97 18-44 (197)
141 2qor_A Guanylate kinase; phosp 96.7 0.001 3.5E-08 56.4 3.6 28 70-97 10-37 (204)
142 2r2a_A Uncharacterized protein 96.7 0.0044 1.5E-07 52.2 7.4 23 73-95 6-28 (199)
143 2plr_A DTMP kinase, probable t 96.7 0.002 6.8E-08 54.6 5.4 29 72-100 4-32 (213)
144 3iij_A Coilin-interacting nucl 96.7 0.0011 3.8E-08 54.8 3.7 26 71-96 10-35 (180)
145 3tqc_A Pantothenate kinase; bi 96.7 0.002 6.7E-08 58.6 5.5 48 50-97 69-117 (321)
146 4eun_A Thermoresistant glucoki 96.6 0.0013 4.3E-08 55.6 4.0 26 71-96 28-53 (200)
147 3bgw_A DNAB-like replicative h 96.6 0.0034 1.2E-07 59.9 7.3 55 51-107 178-232 (444)
148 1nn5_A Similar to deoxythymidy 96.6 0.0019 6.6E-08 54.9 5.0 30 71-100 8-37 (215)
149 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.6E-08 54.8 4.0 25 72-96 3-27 (196)
150 3tr0_A Guanylate kinase, GMP k 96.6 0.0013 4.5E-08 55.5 3.8 26 71-96 6-31 (205)
151 3cm0_A Adenylate kinase; ATP-b 96.6 0.0015 5.1E-08 54.2 4.1 25 72-96 4-28 (186)
152 2c95_A Adenylate kinase 1; tra 96.6 0.0014 4.7E-08 54.9 3.8 26 71-96 8-33 (196)
153 3dm5_A SRP54, signal recogniti 96.6 0.0067 2.3E-07 57.4 8.8 37 71-107 99-135 (443)
154 3e70_C DPA, signal recognition 96.6 0.0067 2.3E-07 55.3 8.6 37 70-106 127-163 (328)
155 1xjc_A MOBB protein homolog; s 96.6 0.0024 8.3E-08 52.1 5.1 29 71-99 3-31 (169)
156 2ze6_A Isopentenyl transferase 96.6 0.0014 4.9E-08 57.5 3.9 25 73-97 2-26 (253)
157 1knq_A Gluconate kinase; ALFA/ 96.6 0.0018 6.1E-08 53.3 4.2 26 71-96 7-32 (175)
158 1y63_A LMAJ004144AAA protein; 96.6 0.0016 5.4E-08 54.2 3.9 26 70-95 8-33 (184)
159 1sky_E F1-ATPase, F1-ATP synth 96.5 0.0077 2.6E-07 57.3 8.9 29 72-100 151-179 (473)
160 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.5E-08 55.0 3.9 26 71-96 5-30 (207)
161 1via_A Shikimate kinase; struc 96.5 0.0013 4.5E-08 54.1 3.2 24 74-97 6-29 (175)
162 1zu4_A FTSY; GTPase, signal re 96.5 0.0077 2.6E-07 54.7 8.5 38 70-107 103-140 (320)
163 1n0w_A DNA repair protein RAD5 96.5 0.0026 8.9E-08 55.2 5.2 48 59-107 12-65 (243)
164 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6.1E-08 52.9 3.8 26 72-97 7-32 (168)
165 2p5t_B PEZT; postsegregational 96.5 0.0022 7.6E-08 56.3 4.6 28 70-97 30-57 (253)
166 2iyv_A Shikimate kinase, SK; t 96.5 0.0014 4.9E-08 54.3 3.2 25 73-97 3-27 (184)
167 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.6E-08 54.5 4.1 27 70-96 13-39 (203)
168 1lvg_A Guanylate kinase, GMP k 96.5 0.0013 4.6E-08 55.4 3.1 26 72-97 4-29 (198)
169 2cdn_A Adenylate kinase; phosp 96.5 0.002 6.7E-08 54.4 4.0 27 70-96 18-44 (201)
170 2z0h_A DTMP kinase, thymidylat 96.5 0.0043 1.5E-07 51.9 6.2 26 74-99 2-27 (197)
171 1u0j_A DNA replication protein 96.5 0.0032 1.1E-07 55.3 5.4 35 60-95 93-127 (267)
172 2vli_A Antibiotic resistance p 96.5 0.0011 3.7E-08 54.9 2.4 26 72-97 5-30 (183)
173 2bwj_A Adenylate kinase 5; pho 96.5 0.0017 5.8E-08 54.5 3.6 26 72-97 12-37 (199)
174 4a74_A DNA repair and recombin 96.4 0.003 1E-07 54.3 5.2 27 70-96 23-49 (231)
175 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0029 9.9E-08 55.8 5.2 27 71-97 3-29 (260)
176 2i1q_A DNA repair and recombin 96.4 0.009 3.1E-07 54.4 8.6 39 57-96 84-122 (322)
177 2wwf_A Thymidilate kinase, put 96.4 0.0019 6.5E-08 54.8 3.8 29 71-99 9-37 (212)
178 1qf9_A UMP/CMP kinase, protein 96.4 0.0022 7.5E-08 53.4 4.1 26 71-96 5-30 (194)
179 1e6c_A Shikimate kinase; phosp 96.4 0.0018 6E-08 53.1 3.4 25 73-97 3-27 (173)
180 3asz_A Uridine kinase; cytidin 96.4 0.0022 7.6E-08 54.4 4.0 28 70-97 4-31 (211)
181 2j9r_A Thymidine kinase; TK1, 96.4 0.0092 3.2E-07 50.5 7.7 111 70-191 26-138 (214)
182 2jaq_A Deoxyguanosine kinase; 96.4 0.0021 7.2E-08 54.1 3.8 24 74-97 2-25 (205)
183 3kl4_A SRP54, signal recogniti 96.4 0.0081 2.8E-07 56.8 8.0 37 71-107 96-132 (433)
184 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.5E-08 56.0 3.9 26 71-96 26-51 (246)
185 1ye8_A Protein THEP1, hypothet 96.4 0.0024 8.1E-08 52.9 3.9 24 74-97 2-25 (178)
186 3ice_A Transcription terminati 96.4 0.0016 5.4E-08 60.2 3.0 31 70-100 172-202 (422)
187 2bdt_A BH3686; alpha-beta prot 96.4 0.0022 7.5E-08 53.4 3.7 22 73-94 3-24 (189)
188 2ewv_A Twitching motility prot 96.4 0.009 3.1E-07 55.6 8.1 108 70-189 134-242 (372)
189 1rj9_A FTSY, signal recognitio 96.3 0.0038 1.3E-07 56.3 5.4 35 71-105 101-135 (304)
190 1cke_A CK, MSSA, protein (cyti 96.3 0.0026 8.8E-08 54.7 4.1 24 73-96 6-29 (227)
191 2z43_A DNA repair and recombin 96.3 0.0067 2.3E-07 55.3 7.1 50 57-107 93-148 (324)
192 1g41_A Heat shock protein HSLU 96.3 0.0026 8.9E-08 60.3 4.3 52 48-99 15-77 (444)
193 1s96_A Guanylate kinase, GMP k 96.3 0.0023 7.9E-08 54.8 3.7 28 70-97 14-41 (219)
194 1zak_A Adenylate kinase; ATP:A 96.3 0.0022 7.4E-08 55.1 3.5 27 71-97 4-30 (222)
195 4gp7_A Metallophosphoesterase; 96.3 0.0017 6E-08 53.3 2.7 22 71-92 8-29 (171)
196 3zvl_A Bifunctional polynucleo 96.3 0.011 3.9E-07 55.8 8.7 27 70-96 256-282 (416)
197 3fb4_A Adenylate kinase; psych 96.3 0.0026 8.8E-08 54.3 3.8 23 74-96 2-24 (216)
198 1aky_A Adenylate kinase; ATP:A 96.3 0.0027 9.3E-08 54.4 3.9 27 71-97 3-29 (220)
199 2pbr_A DTMP kinase, thymidylat 96.3 0.0027 9.2E-08 53.0 3.8 25 74-98 2-26 (195)
200 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.6E-08 55.6 4.0 28 70-97 20-47 (252)
201 2pt5_A Shikimate kinase, SK; a 96.3 0.0029 9.8E-08 51.5 3.8 24 74-97 2-25 (168)
202 1zd8_A GTP:AMP phosphotransfer 96.3 0.0022 7.7E-08 55.2 3.3 26 71-96 6-31 (227)
203 3k1j_A LON protease, ATP-depen 96.3 0.0046 1.6E-07 61.6 5.9 50 46-100 39-88 (604)
204 1uf9_A TT1252 protein; P-loop, 96.3 0.0028 9.5E-08 53.3 3.8 26 70-95 6-31 (203)
205 2ehv_A Hypothetical protein PH 96.2 0.0035 1.2E-07 54.6 4.5 38 70-107 28-66 (251)
206 3p32_A Probable GTPase RV1496/ 96.2 0.009 3.1E-07 55.2 7.5 49 57-106 65-113 (355)
207 2v54_A DTMP kinase, thymidylat 96.2 0.0028 9.6E-08 53.4 3.7 25 72-96 4-28 (204)
208 1z6g_A Guanylate kinase; struc 96.2 0.0024 8.3E-08 54.7 3.3 27 70-96 21-47 (218)
209 2qt1_A Nicotinamide riboside k 96.2 0.003 1E-07 53.5 3.6 26 70-95 19-44 (207)
210 1np6_A Molybdopterin-guanine d 96.2 0.0059 2E-07 50.2 5.3 29 71-99 5-33 (174)
211 1znw_A Guanylate kinase, GMP k 96.2 0.003 1E-07 53.6 3.5 28 70-97 18-45 (207)
212 1m7g_A Adenylylsulfate kinase; 96.2 0.0039 1.3E-07 53.0 4.2 28 70-97 23-50 (211)
213 1gtv_A TMK, thymidylate kinase 96.2 0.0022 7.4E-08 54.6 2.7 25 74-98 2-26 (214)
214 3dl0_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 53.7 3.7 23 74-96 2-24 (216)
215 3b9q_A Chloroplast SRP recepto 96.2 0.0054 1.8E-07 55.3 5.3 30 70-99 98-127 (302)
216 2pez_A Bifunctional 3'-phospho 96.1 0.0067 2.3E-07 50.0 5.4 28 71-98 4-31 (179)
217 2if2_A Dephospho-COA kinase; a 96.1 0.0029 1E-07 53.4 3.3 21 74-94 3-23 (204)
218 3lda_A DNA repair protein RAD5 96.1 0.0073 2.5E-07 56.6 6.2 50 57-107 164-219 (400)
219 2jeo_A Uridine-cytidine kinase 96.1 0.0042 1.5E-07 54.2 4.3 27 70-96 23-49 (245)
220 4e22_A Cytidylate kinase; P-lo 96.1 0.0038 1.3E-07 54.8 3.9 26 71-96 26-51 (252)
221 2eyu_A Twitching motility prot 96.1 0.006 2E-07 53.8 5.2 111 70-191 23-133 (261)
222 3cmu_A Protein RECA, recombina 96.1 0.0054 1.9E-07 68.1 5.8 48 59-107 1414-1462(2050)
223 1htw_A HI0065; nucleotide-bind 96.1 0.0044 1.5E-07 50.1 3.9 27 70-96 31-57 (158)
224 2wsm_A Hydrogenase expression/ 96.1 0.0071 2.4E-07 51.6 5.5 30 70-99 28-57 (221)
225 2zts_A Putative uncharacterize 96.1 0.0035 1.2E-07 54.5 3.6 38 70-107 28-66 (251)
226 4eaq_A DTMP kinase, thymidylat 96.1 0.0094 3.2E-07 51.4 6.2 28 71-98 25-52 (229)
227 1cr0_A DNA primase/helicase; R 96.1 0.0062 2.1E-07 54.7 5.2 38 70-107 33-71 (296)
228 2hf9_A Probable hydrogenase ni 96.1 0.008 2.7E-07 51.4 5.7 30 70-99 36-65 (226)
229 2xxa_A Signal recognition part 96.0 0.029 1E-06 53.1 10.0 37 71-107 99-136 (433)
230 3aez_A Pantothenate kinase; tr 96.0 0.0046 1.6E-07 56.0 4.3 28 70-97 88-115 (312)
231 3exa_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 56.1 3.6 25 72-96 3-27 (322)
232 1jjv_A Dephospho-COA kinase; P 96.0 0.0038 1.3E-07 52.8 3.5 22 73-94 3-24 (206)
233 1sq5_A Pantothenate kinase; P- 96.0 0.012 4.1E-07 53.2 7.0 28 70-97 78-105 (308)
234 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0057 1.9E-07 56.0 4.8 46 54-99 5-51 (359)
235 3r20_A Cytidylate kinase; stru 96.0 0.0045 1.5E-07 53.4 3.8 26 71-96 8-33 (233)
236 4edh_A DTMP kinase, thymidylat 96.0 0.014 4.7E-07 49.7 6.8 30 71-100 5-34 (213)
237 2yhs_A FTSY, cell division pro 96.0 0.012 4.1E-07 56.4 7.0 36 70-105 291-326 (503)
238 1nlf_A Regulatory protein REPA 96.0 0.0074 2.5E-07 53.7 5.3 29 70-98 28-56 (279)
239 3foz_A TRNA delta(2)-isopenten 96.0 0.0052 1.8E-07 55.1 4.1 27 70-96 8-34 (316)
240 2px0_A Flagellar biosynthesis 95.9 0.0081 2.8E-07 54.0 5.4 38 70-107 103-141 (296)
241 2og2_A Putative signal recogni 95.9 0.0074 2.5E-07 55.7 5.3 29 71-99 156-184 (359)
242 3llm_A ATP-dependent RNA helic 95.9 0.14 4.9E-06 44.0 13.3 23 73-95 77-99 (235)
243 1vht_A Dephospho-COA kinase; s 95.9 0.0053 1.8E-07 52.4 4.0 23 72-94 4-26 (218)
244 4akg_A Glutathione S-transfera 95.9 0.022 7.7E-07 65.3 10.0 137 73-221 1268-1431(2695)
245 2xb4_A Adenylate kinase; ATP-b 95.9 0.0049 1.7E-07 52.9 3.8 23 74-96 2-24 (223)
246 2fz4_A DNA repair protein RAD2 95.9 0.14 4.9E-06 44.1 13.2 48 51-107 93-140 (237)
247 2grj_A Dephospho-COA kinase; T 95.9 0.005 1.7E-07 51.6 3.7 27 70-96 10-36 (192)
248 1w36_D RECD, exodeoxyribonucle 95.9 0.03 1E-06 55.6 10.0 26 72-97 164-189 (608)
249 1ak2_A Adenylate kinase isoenz 95.9 0.0056 1.9E-07 52.9 4.1 27 71-97 15-41 (233)
250 3a8t_A Adenylate isopentenyltr 95.9 0.0033 1.1E-07 57.2 2.7 26 71-96 39-64 (339)
251 2qmh_A HPR kinase/phosphorylas 95.9 0.0037 1.3E-07 52.2 2.6 25 72-96 34-58 (205)
252 1e4v_A Adenylate kinase; trans 95.9 0.005 1.7E-07 52.4 3.6 23 74-96 2-24 (214)
253 3lnc_A Guanylate kinase, GMP k 95.9 0.0032 1.1E-07 54.4 2.3 26 71-96 26-52 (231)
254 3crm_A TRNA delta(2)-isopenten 95.9 0.006 2.1E-07 55.2 4.1 25 72-96 5-29 (323)
255 3d3q_A TRNA delta(2)-isopenten 95.8 0.0054 1.8E-07 55.9 3.8 25 73-97 8-32 (340)
256 2r8r_A Sensor protein; KDPD, P 95.8 0.0089 3E-07 51.0 4.9 35 73-107 7-41 (228)
257 3be4_A Adenylate kinase; malar 95.8 0.0054 1.9E-07 52.4 3.6 24 73-96 6-29 (217)
258 3ake_A Cytidylate kinase; CMP 95.8 0.006 2E-07 51.5 3.8 24 74-97 4-27 (208)
259 1a7j_A Phosphoribulokinase; tr 95.8 0.004 1.4E-07 55.9 2.7 27 71-97 4-30 (290)
260 2i3b_A HCR-ntpase, human cance 95.8 0.0057 1.9E-07 51.1 3.4 24 74-97 3-26 (189)
261 3nwj_A ATSK2; P loop, shikimat 95.8 0.0054 1.9E-07 53.6 3.4 26 72-97 48-73 (250)
262 1pzn_A RAD51, DNA repair and r 95.8 0.012 4.3E-07 54.1 6.0 37 59-96 119-155 (349)
263 2f6r_A COA synthase, bifunctio 95.7 0.0058 2E-07 54.5 3.5 25 70-94 73-97 (281)
264 2f1r_A Molybdopterin-guanine d 95.7 0.0044 1.5E-07 50.8 2.5 27 73-99 3-29 (171)
265 3lv8_A DTMP kinase, thymidylat 95.7 0.015 5.1E-07 50.3 6.0 30 71-100 26-55 (236)
266 1ltq_A Polynucleotide kinase; 95.7 0.0066 2.3E-07 54.6 3.8 23 73-95 3-25 (301)
267 3tif_A Uncharacterized ABC tra 95.7 0.0055 1.9E-07 53.1 3.1 26 70-95 29-54 (235)
268 3fwy_A Light-independent proto 95.7 0.012 4.1E-07 53.3 5.4 38 70-107 46-83 (314)
269 1j8m_F SRP54, signal recogniti 95.7 0.015 5.1E-07 52.2 6.0 36 72-107 98-133 (297)
270 2ged_A SR-beta, signal recogni 95.6 0.0086 2.9E-07 49.7 4.1 26 70-95 46-71 (193)
271 2onk_A Molybdate/tungstate ABC 95.6 0.0069 2.3E-07 52.7 3.5 25 70-95 23-47 (240)
272 2ck3_D ATP synthase subunit be 95.6 0.032 1.1E-06 52.9 8.3 37 70-106 151-188 (482)
273 1svm_A Large T antigen; AAA+ f 95.6 0.011 3.8E-07 54.9 5.1 27 70-96 167-193 (377)
274 4tmk_A Protein (thymidylate ki 95.6 0.019 6.6E-07 48.8 6.1 29 72-100 3-31 (213)
275 2v9p_A Replication protein E1; 95.6 0.0075 2.6E-07 54.3 3.7 27 70-96 124-150 (305)
276 3hjn_A DTMP kinase, thymidylat 95.6 0.022 7.7E-07 47.7 6.3 34 74-107 2-35 (197)
277 1yrb_A ATP(GTP)binding protein 95.5 0.016 5.3E-07 50.9 5.6 36 70-106 12-47 (262)
278 2cbz_A Multidrug resistance-as 95.5 0.0069 2.4E-07 52.6 3.1 27 70-96 29-55 (237)
279 3v9p_A DTMP kinase, thymidylat 95.5 0.015 5.3E-07 49.9 5.3 29 71-99 24-52 (227)
280 3ld9_A DTMP kinase, thymidylat 95.5 0.02 6.7E-07 49.1 5.9 29 70-98 19-47 (223)
281 2v3c_C SRP54, signal recogniti 95.5 0.0098 3.4E-07 56.4 4.3 37 71-107 98-134 (432)
282 3end_A Light-independent proto 95.5 0.015 5.2E-07 52.4 5.5 38 70-107 39-76 (307)
283 1ls1_A Signal recognition part 95.5 0.015 5.2E-07 52.2 5.4 37 71-107 97-133 (295)
284 4hlc_A DTMP kinase, thymidylat 95.5 0.016 5.4E-07 49.0 5.1 29 73-101 3-31 (205)
285 2pcj_A ABC transporter, lipopr 95.5 0.0058 2E-07 52.5 2.4 25 71-95 29-53 (224)
286 4b3f_X DNA-binding protein smu 95.4 0.036 1.2E-06 55.6 8.4 45 55-104 193-237 (646)
287 3eph_A TRNA isopentenyltransfe 95.4 0.0095 3.3E-07 55.5 3.8 25 73-97 3-27 (409)
288 2ocp_A DGK, deoxyguanosine kin 95.4 0.0094 3.2E-07 51.7 3.7 26 72-97 2-27 (241)
289 1b0u_A Histidine permease; ABC 95.4 0.0078 2.7E-07 53.1 3.1 26 70-95 30-55 (262)
290 2qm8_A GTPase/ATPase; G protei 95.4 0.028 9.6E-07 51.5 6.9 37 70-106 53-89 (337)
291 3tqf_A HPR(Ser) kinase; transf 95.4 0.0094 3.2E-07 48.5 3.2 24 72-95 16-39 (181)
292 3io3_A DEHA2D07832P; chaperone 95.4 0.021 7.1E-07 52.5 6.0 38 70-107 16-55 (348)
293 3iqw_A Tail-anchored protein t 95.4 0.021 7.2E-07 52.2 6.0 38 70-107 14-51 (334)
294 1mv5_A LMRA, multidrug resista 95.4 0.0088 3E-07 52.1 3.3 26 70-95 26-51 (243)
295 2zu0_C Probable ATP-dependent 95.3 0.011 3.6E-07 52.4 3.6 26 70-95 44-69 (267)
296 3b85_A Phosphate starvation-in 95.3 0.0068 2.3E-07 51.4 2.3 23 73-95 23-45 (208)
297 2olj_A Amino acid ABC transpor 95.3 0.009 3.1E-07 52.7 3.1 26 70-95 48-73 (263)
298 1q3t_A Cytidylate kinase; nucl 95.3 0.013 4.5E-07 50.7 4.1 27 70-96 14-40 (236)
299 1q57_A DNA primase/helicase; d 95.3 0.044 1.5E-06 53.1 8.2 38 70-107 240-278 (503)
300 2ghi_A Transport protein; mult 95.2 0.0096 3.3E-07 52.4 3.1 27 70-96 44-70 (260)
301 2d2e_A SUFC protein; ABC-ATPas 95.2 0.011 3.8E-07 51.7 3.5 25 71-95 28-52 (250)
302 3gfo_A Cobalt import ATP-bindi 95.2 0.0089 3E-07 53.1 2.9 25 71-95 33-57 (275)
303 2ixe_A Antigen peptide transpo 95.2 0.0097 3.3E-07 52.7 3.1 26 70-95 43-68 (271)
304 1sgw_A Putative ABC transporte 95.2 0.0081 2.8E-07 51.2 2.5 25 71-95 34-58 (214)
305 1g8f_A Sulfate adenylyltransfe 95.2 0.018 6.1E-07 55.6 5.2 49 49-98 373-421 (511)
306 1vpl_A ABC transporter, ATP-bi 95.2 0.0097 3.3E-07 52.2 3.1 26 70-95 39-64 (256)
307 1ji0_A ABC transporter; ATP bi 95.2 0.0084 2.9E-07 52.1 2.6 25 71-95 31-55 (240)
308 2ff7_A Alpha-hemolysin translo 95.2 0.0084 2.9E-07 52.4 2.6 25 71-95 34-58 (247)
309 1p9r_A General secretion pathw 95.2 0.036 1.2E-06 52.2 7.1 37 70-106 165-201 (418)
310 2pze_A Cystic fibrosis transme 95.2 0.0086 3E-07 51.6 2.6 26 71-96 33-58 (229)
311 1g6h_A High-affinity branched- 95.2 0.0086 2.9E-07 52.6 2.6 25 71-95 32-56 (257)
312 3cr8_A Sulfate adenylyltranfer 95.2 0.017 5.9E-07 56.4 4.9 29 71-99 368-396 (552)
313 1oix_A RAS-related protein RAB 95.2 0.012 4E-07 49.0 3.3 24 72-95 29-52 (191)
314 4g1u_C Hemin import ATP-bindin 95.1 0.01 3.5E-07 52.4 3.0 25 71-95 36-60 (266)
315 2p67_A LAO/AO transport system 95.1 0.035 1.2E-06 50.9 6.7 37 70-106 54-90 (341)
316 2f9l_A RAB11B, member RAS onco 95.1 0.012 4.2E-07 49.2 3.3 24 72-95 5-28 (199)
317 2axn_A 6-phosphofructo-2-kinas 95.1 0.022 7.6E-07 55.4 5.6 31 70-100 33-63 (520)
318 2wji_A Ferrous iron transport 95.1 0.014 5E-07 47.1 3.7 23 73-95 4-26 (165)
319 2yz2_A Putative ABC transporte 95.1 0.011 3.8E-07 52.2 3.1 26 70-95 31-56 (266)
320 2www_A Methylmalonic aciduria 95.1 0.025 8.6E-07 52.0 5.5 29 71-99 73-101 (349)
321 2j37_W Signal recognition part 95.0 0.023 7.9E-07 54.8 5.4 37 71-107 100-136 (504)
322 2dyk_A GTP-binding protein; GT 95.0 0.016 5.5E-07 46.2 3.7 23 73-95 2-24 (161)
323 2qi9_C Vitamin B12 import ATP- 95.0 0.012 4E-07 51.4 3.0 26 71-96 25-50 (249)
324 2gks_A Bifunctional SAT/APS ki 95.0 0.035 1.2E-06 54.3 6.6 48 51-99 352-399 (546)
325 2ffh_A Protein (FFH); SRP54, s 95.0 0.027 9.4E-07 53.1 5.6 36 71-106 97-132 (425)
326 1fx0_B ATP synthase beta chain 95.0 0.025 8.5E-07 53.9 5.3 37 70-106 163-200 (498)
327 2zej_A Dardarin, leucine-rich 95.0 0.011 3.8E-07 48.8 2.6 21 74-94 4-24 (184)
328 3fvq_A Fe(3+) IONS import ATP- 95.0 0.014 4.8E-07 53.7 3.4 26 70-95 28-53 (359)
329 3f9v_A Minichromosome maintena 94.9 0.0066 2.3E-07 60.2 1.3 52 45-96 292-351 (595)
330 2nq2_C Hypothetical ABC transp 94.9 0.011 3.7E-07 51.8 2.6 25 71-95 30-54 (253)
331 3ug7_A Arsenical pump-driving 94.9 0.039 1.3E-06 50.8 6.4 38 70-107 24-61 (349)
332 3zq6_A Putative arsenical pump 94.9 0.027 9.3E-07 51.3 5.3 36 72-107 14-49 (324)
333 2ihy_A ABC transporter, ATP-bi 94.9 0.013 4.4E-07 52.2 3.0 25 71-95 46-70 (279)
334 2yv5_A YJEQ protein; hydrolase 94.8 0.024 8.3E-07 51.0 4.6 31 57-93 156-186 (302)
335 2gk6_A Regulator of nonsense t 94.8 0.042 1.4E-06 54.9 6.8 35 73-107 196-230 (624)
336 2yyz_A Sugar ABC transporter, 94.8 0.018 6.1E-07 53.1 3.7 26 70-95 27-52 (359)
337 2vp4_A Deoxynucleoside kinase; 94.8 0.012 4.1E-07 50.7 2.4 26 70-95 18-43 (230)
338 2it1_A 362AA long hypothetical 94.8 0.018 6.1E-07 53.2 3.6 26 70-95 27-52 (362)
339 1ypw_A Transitional endoplasmi 94.8 0.014 4.8E-07 60.0 3.3 52 48-99 477-538 (806)
340 1c9k_A COBU, adenosylcobinamid 94.8 0.014 4.9E-07 48.0 2.7 21 75-95 2-22 (180)
341 3nh6_A ATP-binding cassette SU 94.8 0.013 4.5E-07 52.8 2.7 26 70-95 78-103 (306)
342 3rlf_A Maltose/maltodextrin im 94.8 0.018 6.2E-07 53.4 3.6 26 70-95 27-52 (381)
343 2wjg_A FEOB, ferrous iron tran 94.8 0.02 6.9E-07 47.1 3.7 25 71-95 6-30 (188)
344 3kta_A Chromosome segregation 94.7 0.017 5.9E-07 47.5 3.2 25 73-97 27-51 (182)
345 1z2a_A RAS-related protein RAB 94.7 0.018 6.2E-07 46.2 3.3 24 72-95 5-28 (168)
346 3d31_A Sulfate/molybdate ABC t 94.7 0.016 5.5E-07 53.2 3.2 26 70-95 24-49 (348)
347 3sop_A Neuronal-specific septi 94.7 0.017 5.8E-07 51.1 3.2 23 74-96 4-26 (270)
348 1p5z_B DCK, deoxycytidine kina 94.7 0.0089 3E-07 52.7 1.4 28 70-97 22-49 (263)
349 1cp2_A CP2, nitrogenase iron p 94.7 0.032 1.1E-06 49.1 5.1 35 73-107 2-36 (269)
350 2h92_A Cytidylate kinase; ross 94.7 0.018 6E-07 49.1 3.2 24 73-96 4-27 (219)
351 1v43_A Sugar-binding transport 94.7 0.02 6.7E-07 53.1 3.6 26 70-95 35-60 (372)
352 3cmw_A Protein RECA, recombina 94.7 0.042 1.4E-06 60.4 6.7 95 59-162 1418-1518(1706)
353 2bbs_A Cystic fibrosis transme 94.7 0.016 5.4E-07 51.9 2.9 26 70-95 62-87 (290)
354 1nij_A Hypothetical protein YJ 94.7 0.016 5.3E-07 52.7 2.9 26 71-96 3-28 (318)
355 1z47_A CYSA, putative ABC-tran 94.7 0.017 5.7E-07 53.2 3.1 25 71-95 40-64 (355)
356 3tui_C Methionine import ATP-b 94.7 0.02 6.8E-07 52.8 3.6 26 70-95 52-77 (366)
357 2ce2_X GTPase HRAS; signaling 94.7 0.018 6.2E-07 46.0 3.1 22 74-95 5-26 (166)
358 3kjh_A CO dehydrogenase/acetyl 94.6 0.034 1.2E-06 48.2 5.0 33 75-107 3-35 (254)
359 1tq4_A IIGP1, interferon-induc 94.6 0.015 5.2E-07 54.6 2.9 25 71-95 68-92 (413)
360 2pjz_A Hypothetical protein ST 94.6 0.016 5.5E-07 51.0 2.8 25 72-96 30-54 (263)
361 2lkc_A Translation initiation 94.6 0.024 8.1E-07 46.1 3.7 26 70-95 6-31 (178)
362 1nrj_B SR-beta, signal recogni 94.6 0.024 8.3E-07 48.0 3.8 26 70-95 10-35 (218)
363 1kao_A RAP2A; GTP-binding prot 94.6 0.021 7.3E-07 45.7 3.3 23 73-95 4-26 (167)
364 2nzj_A GTP-binding protein REM 94.6 0.02 6.8E-07 46.4 3.1 24 72-95 4-27 (175)
365 3tmk_A Thymidylate kinase; pho 94.5 0.026 8.8E-07 48.1 3.8 28 71-98 4-31 (216)
366 1bif_A 6-phosphofructo-2-kinas 94.5 0.038 1.3E-06 53.1 5.4 31 70-100 37-67 (469)
367 1g29_1 MALK, maltose transport 94.5 0.019 6.5E-07 53.2 3.1 25 71-95 28-52 (372)
368 1r8s_A ADP-ribosylation factor 94.5 0.024 8.3E-07 45.4 3.5 21 75-95 3-23 (164)
369 4gzl_A RAS-related C3 botulinu 94.5 0.023 8E-07 47.7 3.5 41 52-95 13-53 (204)
370 1m8p_A Sulfate adenylyltransfe 94.5 0.04 1.4E-06 54.2 5.6 28 71-98 395-422 (573)
371 1tf7_A KAIC; homohexamer, hexa 94.5 0.042 1.5E-06 53.6 5.8 38 70-107 279-316 (525)
372 1u8z_A RAS-related protein RAL 94.5 0.023 7.8E-07 45.5 3.3 24 72-95 4-27 (168)
373 3gmt_A Adenylate kinase; ssgci 94.5 0.025 8.4E-07 48.5 3.6 24 73-96 9-32 (230)
374 1z08_A RAS-related protein RAB 94.5 0.023 7.9E-07 45.7 3.3 25 71-95 5-29 (170)
375 1oxx_K GLCV, glucose, ABC tran 94.5 0.016 5.5E-07 53.4 2.5 26 70-95 29-54 (353)
376 1xx6_A Thymidine kinase; NESG, 94.4 0.055 1.9E-06 45.1 5.6 36 71-106 7-42 (191)
377 1ek0_A Protein (GTP-binding pr 94.4 0.024 8.2E-07 45.5 3.3 22 74-95 5-26 (170)
378 1c1y_A RAS-related protein RAP 94.4 0.024 8.4E-07 45.4 3.3 22 74-95 5-26 (167)
379 1z0j_A RAB-22, RAS-related pro 94.4 0.024 8.3E-07 45.6 3.3 23 73-95 7-29 (170)
380 2woo_A ATPase GET3; tail-ancho 94.4 0.054 1.8E-06 49.4 5.9 38 70-107 17-54 (329)
381 1lw7_A Transcriptional regulat 94.4 0.024 8.2E-07 52.6 3.6 26 72-97 170-195 (365)
382 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.025 8.4E-07 46.0 3.3 24 72-95 7-30 (177)
383 3q85_A GTP-binding protein REM 94.4 0.024 8.1E-07 45.7 3.1 21 74-94 4-24 (169)
384 3fdi_A Uncharacterized protein 94.3 0.026 9E-07 47.5 3.5 26 72-97 6-31 (201)
385 3con_A GTPase NRAS; structural 94.3 0.025 8.7E-07 46.6 3.3 23 73-95 22-44 (190)
386 3ihw_A Centg3; RAS, centaurin, 94.3 0.026 8.8E-07 46.6 3.3 25 71-95 19-43 (184)
387 1g16_A RAS-related protein SEC 94.3 0.024 8.2E-07 45.6 3.1 23 73-95 4-26 (170)
388 3gd7_A Fusion complex of cysti 94.3 0.025 8.4E-07 52.8 3.4 26 70-95 45-70 (390)
389 1ky3_A GTP-binding protein YPT 94.3 0.032 1.1E-06 45.4 3.8 26 70-95 6-31 (182)
390 2afh_E Nitrogenase iron protei 94.3 0.04 1.4E-06 49.2 4.7 35 73-107 3-37 (289)
391 1m7b_A RND3/RHOE small GTP-bin 94.3 0.024 8.4E-07 46.6 3.1 25 71-95 6-30 (184)
392 2woj_A ATPase GET3; tail-ancho 94.3 0.071 2.4E-06 49.1 6.4 38 70-107 16-55 (354)
393 2erx_A GTP-binding protein DI- 94.3 0.025 8.7E-07 45.5 3.1 23 73-95 4-26 (172)
394 2gj8_A MNME, tRNA modification 94.3 0.024 8.1E-07 46.2 2.9 23 73-95 5-27 (172)
395 4dzz_A Plasmid partitioning pr 94.2 0.051 1.7E-06 45.5 5.1 35 73-107 2-37 (206)
396 1r2q_A RAS-related protein RAB 94.2 0.028 9.4E-07 45.2 3.3 23 73-95 7-29 (170)
397 1upt_A ARL1, ADP-ribosylation 94.2 0.035 1.2E-06 44.7 3.9 25 71-95 6-30 (171)
398 1ihu_A Arsenical pump-driving 94.2 0.052 1.8E-06 53.8 5.8 38 70-107 6-43 (589)
399 2rcn_A Probable GTPase ENGC; Y 94.2 0.043 1.5E-06 50.4 4.7 33 57-95 206-238 (358)
400 1fzq_A ADP-ribosylation factor 94.2 0.041 1.4E-06 45.2 4.2 25 71-95 15-39 (181)
401 2fn4_A P23, RAS-related protei 94.2 0.034 1.2E-06 45.2 3.7 26 70-95 7-32 (181)
402 1x6v_B Bifunctional 3'-phospho 94.1 0.047 1.6E-06 54.0 5.2 28 71-98 51-78 (630)
403 3q72_A GTP-binding protein RAD 94.1 0.024 8.2E-07 45.5 2.7 21 74-94 4-24 (166)
404 1svi_A GTP-binding protein YSX 94.1 0.029 9.9E-07 46.4 3.3 26 70-95 21-46 (195)
405 3c5c_A RAS-like protein 12; GD 94.1 0.029 9.9E-07 46.3 3.3 25 71-95 20-44 (187)
406 1z0f_A RAB14, member RAS oncog 94.1 0.03 1E-06 45.5 3.3 25 71-95 14-38 (179)
407 1u0l_A Probable GTPase ENGC; p 94.1 0.043 1.5E-06 49.4 4.6 33 57-95 160-192 (301)
408 2hxs_A RAB-26, RAS-related pro 94.1 0.026 8.8E-07 45.9 2.9 25 71-95 5-29 (178)
409 3bc1_A RAS-related protein RAB 94.1 0.03 1E-06 46.1 3.3 25 71-95 10-34 (195)
410 2cjw_A GTP-binding protein GEM 94.1 0.032 1.1E-06 46.3 3.5 24 72-95 6-29 (192)
411 1m2o_B GTP-binding protein SAR 94.1 0.028 9.7E-07 46.6 3.1 24 72-95 23-46 (190)
412 2gza_A Type IV secretion syste 94.1 0.024 8.2E-07 52.5 2.8 36 71-107 174-209 (361)
413 2iwr_A Centaurin gamma 1; ANK 94.0 0.024 8.3E-07 46.1 2.6 24 72-95 7-30 (178)
414 2qe7_A ATP synthase subunit al 94.0 0.14 4.6E-06 49.0 7.9 27 70-96 160-187 (502)
415 2oil_A CATX-8, RAS-related pro 94.0 0.032 1.1E-06 46.2 3.3 24 72-95 25-48 (193)
416 3cmu_A Protein RECA, recombina 94.0 0.096 3.3E-06 58.4 7.8 58 49-107 360-418 (2050)
417 2y8e_A RAB-protein 6, GH09086P 94.0 0.03 1E-06 45.5 3.1 23 73-95 15-37 (179)
418 2xau_A PRE-mRNA-splicing facto 94.0 0.28 9.6E-06 50.1 10.9 23 73-95 110-132 (773)
419 2r9v_A ATP synthase subunit al 94.0 0.05 1.7E-06 52.0 4.9 27 70-96 173-200 (515)
420 3pqc_A Probable GTP-binding pr 94.0 0.033 1.1E-06 46.0 3.3 25 71-95 22-46 (195)
421 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.033 1.1E-06 45.6 3.3 23 73-95 6-28 (186)
422 4dsu_A GTPase KRAS, isoform 2B 94.0 0.033 1.1E-06 45.7 3.3 23 73-95 5-27 (189)
423 2orv_A Thymidine kinase; TP4A 94.0 0.088 3E-06 45.0 5.9 108 71-190 18-125 (234)
424 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.041 1.4E-06 43.8 3.7 25 72-96 23-47 (149)
425 3kkq_A RAS-related protein M-R 93.9 0.034 1.2E-06 45.5 3.3 25 71-95 17-41 (183)
426 2efe_B Small GTP-binding prote 93.9 0.034 1.2E-06 45.3 3.3 24 72-95 12-35 (181)
427 2bme_A RAB4A, RAS-related prot 93.9 0.031 1.1E-06 45.8 3.1 25 71-95 9-33 (186)
428 2cxx_A Probable GTP-binding pr 93.9 0.028 9.7E-07 46.2 2.8 22 74-95 3-24 (190)
429 1zj6_A ADP-ribosylation factor 93.9 0.059 2E-06 44.3 4.7 26 70-95 14-39 (187)
430 2g6b_A RAS-related protein RAB 93.9 0.035 1.2E-06 45.2 3.3 25 71-95 9-33 (180)
431 3clv_A RAB5 protein, putative; 93.9 0.034 1.2E-06 46.2 3.3 24 72-95 7-30 (208)
432 3bwd_D RAC-like GTP-binding pr 93.9 0.035 1.2E-06 45.2 3.3 24 72-95 8-31 (182)
433 2a9k_A RAS-related protein RAL 93.9 0.035 1.2E-06 45.4 3.3 24 72-95 18-41 (187)
434 3oaa_A ATP synthase subunit al 93.9 0.12 4.2E-06 49.2 7.3 26 70-95 160-186 (513)
435 3cmw_A Protein RECA, recombina 93.9 0.054 1.9E-06 59.5 5.5 56 51-107 362-418 (1706)
436 1pui_A ENGB, probable GTP-bind 93.8 0.021 7.1E-07 48.1 1.8 25 70-94 24-48 (210)
437 2ck3_A ATP synthase subunit al 93.8 0.047 1.6E-06 52.2 4.4 28 70-97 160-188 (510)
438 3cph_A RAS-related protein SEC 93.8 0.041 1.4E-06 46.2 3.7 25 71-95 19-43 (213)
439 3dz8_A RAS-related protein RAB 93.8 0.035 1.2E-06 45.9 3.2 23 73-95 24-46 (191)
440 3bfv_A CAPA1, CAPB2, membrane 93.8 0.12 4.2E-06 45.5 6.9 53 55-107 64-118 (271)
441 2wjy_A Regulator of nonsense t 93.8 0.089 3.1E-06 53.9 6.7 26 73-98 372-397 (800)
442 2atv_A RERG, RAS-like estrogen 93.8 0.037 1.3E-06 46.0 3.3 25 71-95 27-51 (196)
443 2gf9_A RAS-related protein RAB 93.8 0.038 1.3E-06 45.5 3.3 24 72-95 22-45 (189)
444 1zd9_A ADP-ribosylation factor 93.7 0.039 1.3E-06 45.5 3.3 24 72-95 22-45 (188)
445 2bov_A RAla, RAS-related prote 93.7 0.038 1.3E-06 46.1 3.3 25 71-95 13-37 (206)
446 2a5j_A RAS-related protein RAB 93.7 0.039 1.3E-06 45.6 3.3 24 72-95 21-44 (191)
447 2ew1_A RAS-related protein RAB 93.7 0.036 1.2E-06 46.5 3.1 25 71-95 25-49 (201)
448 4f4c_A Multidrug resistance pr 93.7 0.043 1.5E-06 59.6 4.4 26 70-95 1103-1128(1321)
449 3t5g_A GTP-binding protein RHE 93.7 0.037 1.2E-06 45.2 3.1 25 71-95 5-29 (181)
450 1tf7_A KAIC; homohexamer, hexa 93.7 0.047 1.6E-06 53.3 4.3 38 70-107 37-75 (525)
451 2obl_A ESCN; ATPase, hydrolase 93.7 0.049 1.7E-06 50.0 4.1 29 70-98 69-97 (347)
452 3tw8_B RAS-related protein RAB 93.7 0.035 1.2E-06 45.1 2.9 26 70-95 7-32 (181)
453 1vg8_A RAS-related protein RAB 93.7 0.04 1.4E-06 46.1 3.3 26 70-95 6-31 (207)
454 3cbq_A GTP-binding protein REM 93.6 0.03 1E-06 46.7 2.4 23 71-93 22-44 (195)
455 1z06_A RAS-related protein RAB 93.6 0.041 1.4E-06 45.3 3.3 25 71-95 19-43 (189)
456 3hdt_A Putative kinase; struct 93.6 0.05 1.7E-06 46.5 3.9 26 72-97 14-39 (223)
457 2fg5_A RAB-22B, RAS-related pr 93.6 0.038 1.3E-06 45.8 3.0 24 72-95 23-46 (192)
458 1gwn_A RHO-related GTP-binding 93.6 0.038 1.3E-06 46.5 3.1 25 71-95 27-51 (205)
459 3vkg_A Dynein heavy chain, cyt 93.6 0.1 3.6E-06 60.6 7.4 151 71-242 1303-1490(3245)
460 3reg_A RHO-like small GTPase; 93.6 0.042 1.4E-06 45.5 3.3 24 72-95 23-46 (194)
461 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.029 9.9E-07 51.2 2.4 85 73-169 172-256 (330)
462 2fh5_B SR-beta, signal recogni 93.6 0.045 1.5E-06 46.1 3.5 25 71-95 6-30 (214)
463 3t1o_A Gliding protein MGLA; G 93.6 0.042 1.5E-06 45.4 3.3 25 72-96 14-38 (198)
464 4dkx_A RAS-related protein RAB 93.6 0.043 1.5E-06 46.7 3.3 22 74-95 15-36 (216)
465 1h65_A Chloroplast outer envel 93.5 0.072 2.5E-06 47.0 4.9 26 70-95 37-62 (270)
466 1fx0_A ATP synthase alpha chai 93.5 0.033 1.1E-06 53.2 2.7 27 70-96 161-188 (507)
467 2p5s_A RAS and EF-hand domain 93.5 0.044 1.5E-06 45.7 3.3 25 71-95 27-51 (199)
468 3tkl_A RAS-related protein RAB 93.5 0.044 1.5E-06 45.3 3.3 24 72-95 16-39 (196)
469 2g3y_A GTP-binding protein GEM 93.5 0.041 1.4E-06 46.7 3.1 23 72-94 37-59 (211)
470 3def_A T7I23.11 protein; chlor 93.5 0.074 2.5E-06 46.7 4.9 26 70-95 34-59 (262)
471 3oes_A GTPase rhebl1; small GT 93.5 0.041 1.4E-06 45.9 3.1 25 71-95 23-47 (201)
472 1x3s_A RAS-related protein RAB 93.5 0.045 1.5E-06 45.2 3.3 23 73-95 16-38 (195)
473 1zbd_A Rabphilin-3A; G protein 93.5 0.043 1.5E-06 45.8 3.1 24 72-95 8-31 (203)
474 3e2i_A Thymidine kinase; Zn-bi 93.4 0.081 2.8E-06 44.7 4.7 27 71-97 27-53 (219)
475 1f6b_A SAR1; gtpases, N-termin 93.4 0.04 1.4E-06 46.0 2.9 23 72-94 25-47 (198)
476 1ega_A Protein (GTP-binding pr 93.4 0.041 1.4E-06 49.5 3.1 25 71-95 7-31 (301)
477 2oze_A ORF delta'; para, walke 93.4 0.073 2.5E-06 47.6 4.8 48 56-107 22-72 (298)
478 4bas_A ADP-ribosylation factor 93.4 0.05 1.7E-06 45.1 3.5 26 70-95 15-40 (199)
479 2gf0_A GTP-binding protein DI- 93.4 0.044 1.5E-06 45.5 3.0 25 71-95 7-31 (199)
480 3fkq_A NTRC-like two-domain pr 93.4 0.086 2.9E-06 48.9 5.3 38 70-107 141-179 (373)
481 2npi_A Protein CLP1; CLP1-PCF1 93.4 0.04 1.4E-06 52.6 3.1 26 71-96 137-162 (460)
482 2dpy_A FLII, flagellum-specifi 93.3 0.056 1.9E-06 51.3 4.0 28 70-97 155-182 (438)
483 3bs4_A Uncharacterized protein 93.3 0.24 8.1E-06 43.3 7.7 49 58-107 8-56 (260)
484 2bcg_Y Protein YP2, GTP-bindin 93.3 0.045 1.5E-06 45.8 3.1 25 71-95 7-31 (206)
485 2iut_A DNA translocase FTSK; n 93.3 0.51 1.7E-05 46.0 10.6 38 72-109 214-254 (574)
486 1byi_A Dethiobiotin synthase; 93.3 0.087 3E-06 44.8 4.9 34 73-106 2-36 (224)
487 2qnr_A Septin-2, protein NEDD5 93.3 0.036 1.2E-06 49.8 2.5 21 74-94 20-40 (301)
488 3lxx_A GTPase IMAP family memb 93.2 0.057 1.9E-06 46.6 3.6 26 70-95 27-52 (239)
489 2qu8_A Putative nucleolar GTP- 93.2 0.052 1.8E-06 46.4 3.4 25 71-95 28-52 (228)
490 2q3h_A RAS homolog gene family 93.2 0.049 1.7E-06 45.4 3.1 25 71-95 19-43 (201)
491 3k53_A Ferrous iron transport 93.2 0.051 1.8E-06 48.0 3.4 24 72-95 3-26 (271)
492 3cio_A ETK, tyrosine-protein k 93.2 0.15 5.1E-06 45.7 6.5 53 55-107 86-140 (299)
493 2o52_A RAS-related protein RAB 93.2 0.046 1.6E-06 45.6 2.9 25 71-95 24-48 (200)
494 2xzl_A ATP-dependent helicase 93.2 0.098 3.3E-06 53.7 5.8 26 73-98 376-401 (802)
495 1ksh_A ARF-like protein 2; sma 93.2 0.052 1.8E-06 44.5 3.2 25 71-95 17-41 (186)
496 3igf_A ALL4481 protein; two-do 93.1 0.067 2.3E-06 49.5 4.2 35 73-107 3-37 (374)
497 2fv8_A H6, RHO-related GTP-bin 93.1 0.05 1.7E-06 45.7 3.0 24 72-95 25-48 (207)
498 2fu5_C RAS-related protein RAB 93.1 0.03 1E-06 45.8 1.6 24 72-95 8-31 (183)
499 2atx_A Small GTP binding prote 93.1 0.051 1.7E-06 44.9 3.0 23 73-95 19-41 (194)
500 1moz_A ARL1, ADP-ribosylation 93.1 0.041 1.4E-06 44.9 2.4 24 71-94 17-40 (183)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.9e-38 Score=313.10 Aligned_cols=299 Identities=16% Similarity=0.184 Sum_probs=223.3
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHH----HhhccCcceEEEeechhhhhc--CCHHHHHHH
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFS----KISRRFEGSYFAHNVREAEET--GKLADLRKE 124 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~ 124 (398)
+||+.++++|.++|........++|+|+|+||+||||||+++++ .+..+|+..+|++ ++.. .++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999754324679999999999999999999997 5888999999997 4443 367888999
Q ss_pred HHHHHhcCCC---CCCCCcc----chHHHHHhhCCc-eEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHHHh
Q 015918 125 LLSTLLNDGN---MNKFPNI----GLNFQSKRLTRK-KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN 196 (398)
Q Consensus 125 i~~~l~~~~~---~~~~~~~----~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~~~ 196 (398)
++.++..... .....+. ....+...+.++ ++||||||+|+..++ .+... ++++||||||+..+...
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-----~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE-----LRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-----TTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc-----CCCEEEEEcCCHHHHHH
Confidence 9998876532 1111111 367788888896 999999999998765 33221 69999999999988876
Q ss_pred cC-CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHH-HhccC
Q 015918 197 CG-VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAIS-KLEMV 274 (398)
Q Consensus 197 ~~-~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~~~~-~l~~~ 274 (398)
.. ....+++++|+.+++++||.+.++.... .+...+.+.+|++.|+|+||||+.+|..++... +.|...+. .+...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc
Confidence 54 3357999999999999999998755432 356677899999999999999999999987764 22322222 11110
Q ss_pred C-----------hhhHHHHHHHhHhcCchHHHHHHHHhhcCcCCcChHHHHHHHHhc--Cc-----------cccccHHH
Q 015918 275 P-----------QMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNAC--EF-----------FATSGIEV 330 (398)
Q Consensus 275 ~-----------~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~~~~~~l~~~~~~~--~~-----------~~~~~l~~ 330 (398)
. -..+...++.+|..|++.++.+|.++|+||.+.+.+ ..+|.+. +. +...+++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 1 134555666677777777777777999999886555 4566554 21 12247999
Q ss_pred HhhccCeeecc---CCceEecHHHHHHHHHHHhhcC
Q 015918 331 LVDKSLITISE---YNKIRMHDLMRNMGREIVRQES 363 (398)
Q Consensus 331 L~~~~Ll~~~~---~~~~~~H~lir~~~~~~~~~~~ 363 (398)
|++++|++... .++|+||+++|+||++++.+.+
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999998653 3469999999999998776654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.5e-35 Score=318.15 Aligned_cols=306 Identities=18% Similarity=0.246 Sum_probs=237.1
Q ss_pred cccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH---hhccCcceE-EEeechhhhhcCCH
Q 015918 43 TFETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSY-FAHNVREAEETGKL 118 (398)
Q Consensus 43 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~~ 118 (398)
.|+.++.||||+.++++|.+.|.... +..++++|+|+||+||||||++++++ ....|...+ |+. .... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~-~~~~~ 195 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQ-DKSGL 195 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSC-CHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCc-CchHH
Confidence 34567789999999999999997554 67899999999999999999999977 345566555 665 2111 12223
Q ss_pred HHHHHHHHHHHhcCCCCCCCC----ccchHHHHHhhCCc--eEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChh
Q 015918 119 ADLRKELLSTLLNDGNMNKFP----NIGLNFQSKRLTRK--KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 192 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~----~~~~~~l~~~l~~~--~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 192 (398)
...+..++..+.......... +.....+...+.++ ++||||||+|+..++..+ .++++||+|||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 344555666665443221111 12556666667666 999999999998776654 57899999999997
Q ss_pred HHHh-cCCCeeEEcCC-CChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHHHHHH
Q 015918 193 ALIN-CGVNKIYQIKE-LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISK 270 (398)
Q Consensus 193 ~~~~-~~~~~~~~l~~-L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~~~~~ 270 (398)
+... ......+.+++ |+.+++++||...+.... ....+.+.+|++.|+|+||||+.+|.+++..+ ..|...+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 7643 34556788986 999999999998773322 22335688999999999999999999998765 467777777
Q ss_pred hccCC-----------hhhHHHHHHHhHhcCchHHHHHHHHhhcCcCC--cChHHHHHHHHhcCccccccHHHHhhccCe
Q 015918 271 LEMVP-----------QMEIQEVLKISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVDKSLI 337 (398)
Q Consensus 271 l~~~~-----------~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll 337 (398)
+.... ...+..++..+|+.|+++++.+|.++|+||.+ ++.+.+..+|..+....+..++.|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 65432 24689999999999999999999999999986 889999999988777788999999999999
Q ss_pred eeccCCc---eEecHHHHHHHHHHHhhc
Q 015918 338 TISEYNK---IRMHDLMRNMGREIVRQE 362 (398)
Q Consensus 338 ~~~~~~~---~~~H~lir~~~~~~~~~~ 362 (398)
+...++. |+||+++|+|+++.+.++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9876664 999999999999987654
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=291.62 Aligned_cols=299 Identities=19% Similarity=0.224 Sum_probs=223.2
Q ss_pred cccccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh---hccCc-ceEEEeechhhhhcCCH
Q 015918 43 TFETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI---SRRFE-GSYFAHNVREAEETGKL 118 (398)
Q Consensus 43 ~~~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 118 (398)
.|+.++.||||+.+++.|.++|.... +..++++|+|++|+||||||.++++.. ...|+ .++|++. +.. +.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~----~~~-~~ 192 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV----GKQ-DK 192 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE----ESC-CH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC----CCC-ch
Confidence 34677889999999999999998644 567899999999999999999999764 67785 5777762 221 22
Q ss_pred HHHHHH---HHHHHhcCCCC----CCCCccchHHHHHhhCC--ceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeC
Q 015918 119 ADLRKE---LLSTLLNDGNM----NKFPNIGLNFQSKRLTR--KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 119 ~~~~~~---i~~~l~~~~~~----~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
..+... +...+...... ....+.....+...+.+ +++||||||+|+...+..+ .++++||+|||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR 265 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECC
Confidence 223333 33333321111 01111144555555554 7899999999987766543 56899999999
Q ss_pred ChhHHHhcCCCeeEEc---CCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCCHHHHHH
Q 015918 190 DKQALINCGVNKIYQI---KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWEN 266 (398)
Q Consensus 190 ~~~~~~~~~~~~~~~l---~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~~~~~~~ 266 (398)
+..+..... ...+++ ++|+.+|+.+||...++.. .....+.+..+++.|+|+|++|++++..+...+ ..|..
T Consensus 266 ~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 987765533 234444 5899999999999887432 112235588999999999999999999998754 35777
Q ss_pred HHHHhccCC-----------hhhHHHHHHHhHhcCchHHHHHHHHhhcCcCC--cChHHHHHHHHhcCccccccHHHHhh
Q 015918 267 AISKLEMVP-----------QMEIQEVLKISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVD 333 (398)
Q Consensus 267 ~~~~l~~~~-----------~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~ 333 (398)
.+..+.... ..++..++..+|+.|++..+.+|.++|+||.+ ++.+.+..+|+.+.......++.|++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHh
Confidence 777665332 24789999999999999999999999999875 88889999998766667889999999
Q ss_pred ccCeeeccCC---ceEecHHHHHHHHHHH
Q 015918 334 KSLITISEYN---KIRMHDLMRNMGREIV 359 (398)
Q Consensus 334 ~~Ll~~~~~~---~~~~H~lir~~~~~~~ 359 (398)
++|+....++ +|+||+++|+|+++..
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999865432 6999999999999883
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-33 Score=286.57 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=210.5
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH--hhccCcc-eEEEeechhhhhcCCHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK--ISRRFEG-SYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
+..|||+.++++|.++|... ...++++|+|++|+||||||++++++ +..+|+. ++|++ ++...+...++..
T Consensus 128 k~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHH
Confidence 34599999999999999753 34789999999999999999999974 6788987 78887 5555566666666
Q ss_pred HHHHHhcCCC--CCCCC---------ccchHHHHHhh---CCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCC
Q 015918 125 LLSTLLNDGN--MNKFP---------NIGLNFQSKRL---TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 125 i~~~l~~~~~--~~~~~---------~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
+...+..... ..... +.....+...+ .++++||||||+|+...++.+. ++++||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 6654432210 00000 01234455544 6799999999999988888762 68999999999
Q ss_pred hhHHHhcCCCeeEEcC------CCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccC--CHH
Q 015918 191 KQALINCGVNKIYQIK------ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK--RKE 262 (398)
Q Consensus 191 ~~~~~~~~~~~~~~l~------~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~--~~~ 262 (398)
..+.........+.++ +|+.+|+++||.+.. +.. . .++.. +.|+|+|+||+.+|..++.. ...
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-~----eeL~~---eICgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-P----QDLPR---EVLTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-T----TTHHH---HHCCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-H----HHHHH---HHhCCCHHHHHHHHHHHhCCCCCHH
Confidence 9876533222234555 899999999999885 322 1 12233 34999999999999999875 566
Q ss_pred HHHHHHHHhccCChhhHHHHHHHhHhcCchHH-HHHHHHhhcCcCC--cChHHHHHHHHhcC-ccccccHHHHhhccCee
Q 015918 263 VWENAISKLEMVPQMEIQEVLKISYDGLDDKE-KNIFLDIACFLVG--EDRDIVTKYLNACE-FFATSGIEVLVDKSLIT 338 (398)
Q Consensus 263 ~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~-~~~l~~la~~~~~--~~~~~l~~~~~~~~-~~~~~~l~~L~~~~Ll~ 338 (398)
.|... ....+..++..+|+.|+++. |.||+++|+||.+ ++.+.+..+|..++ ......++.|++++|++
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 67542 35779999999999999999 9999999999976 77888999998763 34678899999999999
Q ss_pred ecc-CCceEecHHHHHH
Q 015918 339 ISE-YNKIRMHDLMRNM 354 (398)
Q Consensus 339 ~~~-~~~~~~H~lir~~ 354 (398)
..+ .++|+||+++++.
T Consensus 419 ~d~~~~rYrMHDLllEL 435 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLEL 435 (1221)
T ss_dssp BCSSSSEEBCCCHHHHH
T ss_pred EeCCCCEEEehHHHHHH
Confidence 763 5689999998873
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.88 E-value=3e-21 Score=180.95 Aligned_cols=290 Identities=14% Similarity=0.102 Sum_probs=178.0
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhh--hhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA--EETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~ 122 (398)
..++.|+||+.+++.|.+++.. + ++++|+|++|+|||||++++++... .+|+...... ....+...+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~---~--~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN---Y--PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH---C--SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhc---C--CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHH
Confidence 5677899999999999999864 2 6999999999999999999998751 5666521111 0012444555
Q ss_pred HHHHHHHhc---------------CCCCC-CCCcc--chHHHHHhhCC-ceEEEEEeCCCChH--------hHHHHHccC
Q 015918 123 KELLSTLLN---------------DGNMN-KFPNI--GLNFQSKRLTR-KKVLIVFDDVNHPR--------QIEFLIGNL 175 (398)
Q Consensus 123 ~~i~~~l~~---------------~~~~~-~~~~~--~~~~l~~~l~~-~~~LlvlDd~~~~~--------~~~~l~~~l 175 (398)
..+...+.. ....+ ..... ....+...... ++++|||||++... .+..++..+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 444443321 00000 00011 22233333322 38999999997532 222222221
Q ss_pred CCCCCCcEEEEEeCChhHHHh-----------c-CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcC
Q 015918 176 DWFASGSRILITARDKQALIN-----------C-GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ 243 (398)
Q Consensus 176 ~~~~~~~~iliTsR~~~~~~~-----------~-~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 243 (398)
....+++++|+|++....... . .....+.+.||+.+|+.+++.......... ...+.+..+++.|+
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tg 236 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLD 236 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhC
Confidence 111247889999887643111 1 123579999999999999998754222211 22456889999999
Q ss_pred CChHHHHHHHHHhcc-CCHHHHHHHHHHhccCChhhHHHHHHHhHhcC---chHHHHHHHHhhcCcCCcChHHHHHHHH-
Q 015918 244 GVPIALKILGRFLFR-KRKEVWENAISKLEMVPQMEIQEVLKISYDGL---DDKEKNIFLDIACFLVGEDRDIVTKYLN- 318 (398)
Q Consensus 244 g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L---~~~~~~~l~~la~~~~~~~~~~l~~~~~- 318 (398)
|+|+++..++..+.. .....+ ...+ ...+...+...+..+ ++..+.++..+|+ + ..+.+.+...+.
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~~~ 307 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRA---MKRT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRDYLAV 307 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHH---HHHH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccHhHH---HHHH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHHHHHH
Confidence 999999999876533 222111 1111 111222233334444 7888999998988 3 466677766652
Q ss_pred ----hcCccccccHHHHhhccCeeeccCCceEe-cHHHHHHHH
Q 015918 319 ----ACEFFATSGIEVLVDKSLITISEYNKIRM-HDLMRNMGR 356 (398)
Q Consensus 319 ----~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~-H~lir~~~~ 356 (398)
.+......+++.|.+.+||... ++.|++ ||++++|.+
T Consensus 308 ~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 308 KGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 2223345789999999999987 566766 999999864
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.86 E-value=3.9e-20 Score=173.72 Aligned_cols=286 Identities=13% Similarity=0.101 Sum_probs=171.4
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhh-hhcCCHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA-EETGKLADLRK 123 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~ 123 (398)
..+..|+||+.+++.|.+ +.. ++++|+|++|+|||+|++++++..... .+|+...... ....+...+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHH
Confidence 567789999999999999 753 599999999999999999999886533 4666522110 00122333333
Q ss_pred HHHHHHhc-------------CCC---CCC----C-----CccchHHHHHhhCC---ceEEEEEeCCCChH-----hHHH
Q 015918 124 ELLSTLLN-------------DGN---MNK----F-----PNIGLNFQSKRLTR---KKVLIVFDDVNHPR-----QIEF 170 (398)
Q Consensus 124 ~i~~~l~~-------------~~~---~~~----~-----~~~~~~~l~~~l~~---~~~LlvlDd~~~~~-----~~~~ 170 (398)
.+...+.. ... .+. . .......+...+.. ++++|||||++... .+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 33332210 000 000 0 01112222222211 49999999996432 2222
Q ss_pred HHccCCCCCCCcEEEEEeCChhHHHh-----------cCC-CeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHH
Q 015918 171 LIGNLDWFASGSRILITARDKQALIN-----------CGV-NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEA 238 (398)
Q Consensus 171 l~~~l~~~~~~~~iliTsR~~~~~~~-----------~~~-~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i 238 (398)
++..+....++.++|+|++....... ... ...+.+.+|+.+|+.+++............. ...+
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHH
Confidence 22221111246789999987643221 111 3679999999999999998754211111111 3789
Q ss_pred HHHcCCChHHHHHHHHHhcc-CCHHHHHHHHHHhccCChhhHHHHHHHhHh-------cCchHHHHHHHHhhcCcCCcCh
Q 015918 239 IKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMVPQMEIQEVLKISYD-------GLDDKEKNIFLDIACFLVGEDR 310 (398)
Q Consensus 239 ~~~~~g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~-------~L~~~~~~~l~~la~~~~~~~~ 310 (398)
++.|+|+|+++..++..+.. .....+. ..+. ..+...+...+. .+++..+.++..+|+ + . +.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTL----EYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHH---HHHH----HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 99999999999999887643 2222221 1110 111122222222 688899999999998 3 3 66
Q ss_pred HHHHHHH----H--hcCccccccHHHHhhccCeeeccCCceEe-cHHHHHHH
Q 015918 311 DIVTKYL----N--ACEFFATSGIEVLVDKSLITISEYNKIRM-HDLMRNMG 355 (398)
Q Consensus 311 ~~l~~~~----~--~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~-H~lir~~~ 355 (398)
+.+...+ + .+.......++.|.+.+||... ++.|++ ||+++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHhh
Confidence 7766443 2 1223356789999999999987 466776 99999875
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.79 E-value=3.7e-18 Score=163.63 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=169.9
Q ss_pred cccCcccccchhHHHHHHHh-ccC-CC--CCceEEEE--EcCCCccHHHHHHHHHHHhhcc-----Cc-ceEEEeechhh
Q 015918 45 ETENKLVGVDSRIEEILSLL-GVG-LT--MDTCKLGI--WGIGGVGKTAIAGAFFSKISRR-----FE-GSYFAHNVREA 112 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L-~~~-~~--~~~~~i~I--~G~~G~GKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~ 112 (398)
..+..|+||+.+++.|.+++ ... .. ...+.++| +|++|+|||||++.+++..... +. ..+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34578999999999999988 421 10 23567888 9999999999999999886553 12 245555 3
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCC-CccchHHHHHhhC--CceEEEEEeCCCCh--------HhHHHHHccCCCC---
Q 015918 113 EETGKLADLRKELLSTLLNDGNMNKF-PNIGLNFQSKRLT--RKKVLIVFDDVNHP--------RQIEFLIGNLDWF--- 178 (398)
Q Consensus 113 ~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~--~~~~LlvlDd~~~~--------~~~~~l~~~l~~~--- 178 (398)
........++..++..+......... .......+...+. +++++|||||++.. ..+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 34456778888888877543221011 1112334444443 67999999999643 2333332222111
Q ss_pred C--CCcEEEEEeCChhHHH--------h-cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcC----
Q 015918 179 A--SGSRILITARDKQALI--------N-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---- 243 (398)
Q Consensus 179 ~--~~~~iliTsR~~~~~~--------~-~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---- 243 (398)
. ....+|+||+...... . ......+.+++++.+++.+++..++...........+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 4456777886554221 1 11233499999999999999976542111111233567889999999
Q ss_pred --CChHHHHHHHHHhcc------C---CHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCc----CCc
Q 015918 244 --GVPIALKILGRFLFR------K---RKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGE 308 (398)
Q Consensus 244 --g~Pl~i~~l~~~l~~------~---~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~----~~~ 308 (398)
|+|..+..++..... . ....+........ . ...+...+..|++..+.++..++.+. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE---A---ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 999877766543311 0 1122222222110 0 23344566889999999998888753 235
Q ss_pred ChHHHHH----HH-HhcC------ccccccHHHHhhccCeeec
Q 015918 309 DRDIVTK----YL-NACE------FFATSGIEVLVDKSLITIS 340 (398)
Q Consensus 309 ~~~~l~~----~~-~~~~------~~~~~~l~~L~~~~Ll~~~ 340 (398)
+...+.. +. ...+ .....+++.|.+.|||...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 5543322 22 1111 1234679999999999864
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=2.3e-15 Score=142.79 Aligned_cols=279 Identities=13% Similarity=0.003 Sum_probs=171.3
Q ss_pred ccCcccccchhHHHHHHHhccC-CCCCceEEEEEcCCCccHHHHHHHHHHHhhcc--------CcceEEEeechhhhhcC
Q 015918 46 TENKLVGVDSRIEEILSLLGVG-LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETG 116 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~-~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 116 (398)
.+..|+||+.+++.+.+++... .....+.++|+|++|+|||+||+.+++.+... ....+|+. .....
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ 93 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVG 93 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCC
Confidence 3478999999999999887642 11456789999999999999999999886443 23345555 33444
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCC--ccchHHHHHhhCCceEEEEEeCCCChHh-------HHHHHccCCCCCCCcEEEE
Q 015918 117 -KLADLRKELLSTLLNDGNMNKFP--NIGLNFQSKRLTRKKVLIVFDDVNHPRQ-------IEFLIGNLDWFASGSRILI 186 (398)
Q Consensus 117 -~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~LlvlDd~~~~~~-------~~~l~~~l~~~~~~~~ili 186 (398)
+...++..++..+.......... ......+...+...+.+|+|||++.... +..+.... .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 67777788877774332211111 1234555566666656999999975432 22332222 6778888
Q ss_pred EeCChhHHH----h--cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcC---CChHHHHHHHHHhc
Q 015918 187 TARDKQALI----N--CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLF 257 (398)
Q Consensus 187 TsR~~~~~~----~--~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~i~~l~~~l~ 257 (398)
||+...... . ......+.+++++.++..+++...+...........+..+.+++.++ |+|..+..++....
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 887653111 1 12234899999999999999998753111111222356778888888 99985543333321
Q ss_pred c-------CCHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhc-Cc-CCcChHHHHHHHHhcC------c
Q 015918 258 R-------KRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIAC-FL-VGEDRDIVTKYLNACE------F 322 (398)
Q Consensus 258 ~-------~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~-~~-~~~~~~~l~~~~~~~~------~ 322 (398)
. -....+..++... ....+...+..|++..+.++..++. .. .++ .+....+...-+ .
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~-------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDY-------EQERLIEAVKALPFHYKLALRSLIESEDVMSA-HKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHH-HHHHHHHHHHTTCCCCCHH
T ss_pred HHhcCCCccCHHHHHHHHHHH-------hcchHHHHHHcCCHHHHHHHHHHHHhcccChH-HHHHHHHHHHcCCCCCCHH
Confidence 1 1234444444332 1234566778899999998887776 21 111 112223332211 1
Q ss_pred cccccHHHHhhccCeeec
Q 015918 323 FATSGIEVLVDKSLITIS 340 (398)
Q Consensus 323 ~~~~~l~~L~~~~Ll~~~ 340 (398)
....+++.|...|+++..
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 234578999999999864
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=2e-15 Score=143.43 Aligned_cols=305 Identities=12% Similarity=0.040 Sum_probs=184.0
Q ss_pred ccCcccccchhHHHHHHHhccC---CCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-cceEEEeechhhhhcCCHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVG---LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~---~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 121 (398)
.++.|+||+.+++.+..++... ..+..+.++|+|++|+|||||++.+++...... ...+++. .....+...+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 3478999999999999988642 112334899999999999999999999876552 3345555 3444556677
Q ss_pred HHHHHHHHhcCCCCCCCC-ccchHHHHHhh--CCceEEEEEeCCCC--hHhHHHHHccCCCCC----CCcEEEEEeCChh
Q 015918 122 RKELLSTLLNDGNMNKFP-NIGLNFQSKRL--TRKKVLIVFDDVNH--PRQIEFLIGNLDWFA----SGSRILITARDKQ 192 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l--~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~----~~~~iliTsR~~~ 192 (398)
...++..+.......... ......+...+ .+++.+|+||+++. ......+...+.... .+..+|++++...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 777777664332110111 11223333333 35689999999974 344555544443221 3667888877653
Q ss_pred HHHhcC-------CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHc---------CCChHHHHHHHHHh
Q 015918 193 ALINCG-------VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYA---------QGVPIALKILGRFL 256 (398)
Q Consensus 193 ~~~~~~-------~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Pl~i~~l~~~l 256 (398)
...... ....+.+++++.++..+++...+...........+....+++.+ .|+|..+..++...
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322221 22369999999999999998876321111233457788999999 79998777665543
Q ss_pred cc---------CCHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCc----C-CcChHHHHHHHHh---
Q 015918 257 FR---------KRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----V-GEDRDIVTKYLNA--- 319 (398)
Q Consensus 257 ~~---------~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~----~-~~~~~~l~~~~~~--- 319 (398)
.. -.............. ..+...+..|++..+.++..++.+. . .++.+.+......
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 21 112233333222211 1223446788899998888777653 1 3555555443322
Q ss_pred ----cC---ccccccHHHHhhccCeeeccC-------Cce-------EecHHHHHHHHHHHhh
Q 015918 320 ----CE---FFATSGIEVLVDKSLITISEY-------NKI-------RMHDLMRNMGREIVRQ 361 (398)
Q Consensus 320 ----~~---~~~~~~l~~L~~~~Ll~~~~~-------~~~-------~~H~lir~~~~~~~~~ 361 (398)
.. ......++.|...|++..... |++ ..|++...+..+++.+
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 11 123467999999999997533 322 2356666665555543
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=8.6e-16 Score=145.60 Aligned_cols=284 Identities=15% Similarity=0.058 Sum_probs=168.6
Q ss_pred cccCcccccchhHHHHHHHhccC--CCCCceEEEEEcCCCccHHHHHHHHHHHhhccC---cceEEEeechhhhhcCCHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG--LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~--~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~ 119 (398)
..+..|+||+.+++.+.+++... . ...+.++|+|++|+|||||++.+++.+...+ ...+|+. ........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~-~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYRE-EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGT-CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHH
Confidence 34578999999999999998742 2 4567899999999999999999999876542 2345555 33344555
Q ss_pred HHHHHHHHHHhcCCCCCCC-CccchHHHHHhh--CCceEEEEEeCCCCh------HhHHHHHccCCC-CCCCcEEEEEeC
Q 015918 120 DLRKELLSTLLNDGNMNKF-PNIGLNFQSKRL--TRKKVLIVFDDVNHP------RQIEFLIGNLDW-FASGSRILITAR 189 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l--~~~~~LlvlDd~~~~------~~~~~l~~~l~~-~~~~~~iliTsR 189 (398)
.+...++..+......... .......+...+ .+++.+||||+++.. ..+..+...+.. ...+..+|++|+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 6666665555322111010 011233333333 245899999999642 233333332211 134566777887
Q ss_pred ChhHHHhc------C-CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcC---CChHHHHHHHHHhcc-
Q 015918 190 DKQALINC------G-VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLFR- 258 (398)
Q Consensus 190 ~~~~~~~~------~-~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~i~~l~~~l~~- 258 (398)
........ . ....+.+++++.++..+++...+...........+....+++.++ |+|..+..++.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 65432221 1 125899999999999999987652111112233566788888888 999965554443311
Q ss_pred --------CCHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCc----CCcChHHH-------HHHHHh
Q 015918 259 --------KRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIV-------TKYLNA 319 (398)
Q Consensus 259 --------~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~----~~~~~~~l-------~~~~~~ 319 (398)
-....+..+.... ....+...+..+++..+.++..++.+. ..++.+.+ ...++.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI-------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1223333333322 234566778889999998888777532 11334322 222221
Q ss_pred cC---ccccccHHHHhhccCeeec
Q 015918 320 CE---FFATSGIEVLVDKSLITIS 340 (398)
Q Consensus 320 ~~---~~~~~~l~~L~~~~Ll~~~ 340 (398)
.. .....+++.|...|+++..
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 22 2245679999999999864
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=8.4e-15 Score=138.85 Aligned_cols=284 Identities=13% Similarity=0.045 Sum_probs=168.3
Q ss_pred ccCcccccchhHHHHHHHhccCC-CCCceEEEEEcCCCccHHHHHHHHHHHhhcc------CcceEEEeechhhhhcCCH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 118 (398)
.++.|+||+.+++.+..++.... ....+.++|+||+|+|||||++.+++.+... ....+|+. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 34789999999999999985431 1456789999999999999999999886443 22344554 4445566
Q ss_pred HHHHHHHHHHHhcCCCCCCC-CccchHHHHHhh--CCceEEEEEeCCCChHh----HHHH---HccCCCC--CCCcEEEE
Q 015918 119 ADLRKELLSTLLNDGNMNKF-PNIGLNFQSKRL--TRKKVLIVFDDVNHPRQ----IEFL---IGNLDWF--ASGSRILI 186 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~----~~~l---~~~l~~~--~~~~~ili 186 (398)
..++..++..+......... .......+...+ .+++.+|+||+++.... .+.+ ....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 77777888777443221111 111234444444 35689999999975432 1222 2222111 34566777
Q ss_pred EeCChhHHH-----hcCCC--eeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcC---CChHHHHHHHHHh
Q 015918 187 TARDKQALI-----NCGVN--KIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFL 256 (398)
Q Consensus 187 TsR~~~~~~-----~~~~~--~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl~i~~l~~~l 256 (398)
+|+..+... ..+.. ..+.+++++.++..+++...+...........+..+.+++.++ |+|..+..++...
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 776552211 11122 5789999999999999987752100111122345778888888 9996555444333
Q ss_pred cc---------CCHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhc-CcC--CcChHHHHHH----HHhc
Q 015918 257 FR---------KRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIAC-FLV--GEDRDIVTKY----LNAC 320 (398)
Q Consensus 257 ~~---------~~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~-~~~--~~~~~~l~~~----~~~~ 320 (398)
.. -....+..+.... ....+...+..|++..+.++..++. +.. .+....+.+. +...
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~-------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEI-------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL 325 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHH-------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHH-------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 11 1234444443332 1234566788999999988877774 321 2434422222 2111
Q ss_pred C------ccccccHHHHhhccCeeec
Q 015918 321 E------FFATSGIEVLVDKSLITIS 340 (398)
Q Consensus 321 ~------~~~~~~l~~L~~~~Ll~~~ 340 (398)
+ .....+++.|...|+++..
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 326 GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 1234678999999999964
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.56 E-value=1.8e-13 Score=120.76 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=120.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
....|+||+.+++.+..++.... ..+.++|+|++|+|||||++.+++.+...+......+ ..... +..+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR--IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDN-CREI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC--CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHH-HHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHH-HHHH
Confidence 44579999999999999997532 3458899999999999999999988654432110000 00000 0000
Q ss_pred HHHH----hcCCCCCCCCccchHHHHHh-----hCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChhHH
Q 015918 126 LSTL----LNDGNMNKFPNIGLNFQSKR-----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL 194 (398)
Q Consensus 126 ~~~l----~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~~ 194 (398)
.... ................+... ..+++.+|||||++. ...+..+...+.....+..+|+||+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 00000000000001111111 134678999999964 445555655554445677888888665321
Q ss_pred --HhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 195 --INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 195 --~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
........+.+++++.++..+++...+..... ....+....+++.++|+|..+..++..+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12234578999999999999999877633221 2335668899999999999998877654
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.51 E-value=9e-13 Score=114.64 Aligned_cols=189 Identities=14% Similarity=0.048 Sum_probs=117.2
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..-..++||+..++.+.+++... ..+.++|+|++|+|||++++.+++.+........++... .........+. .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~ 87 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVR-H 87 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHH-H
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHH-H
Confidence 34467999999999999999763 333489999999999999999998864433222222211 11112222221 2
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChhH--HHhcCCC
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQA--LINCGVN 200 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~--~~~~~~~ 200 (398)
....+..... ....++.+|+|||++.. .....+...+.....++.+|+|++.... .......
T Consensus 88 ~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 88 KIKEFARTAP--------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHTSCC--------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhcccC--------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 2222211100 11356889999999743 3344444433333457778888876531 1122345
Q ss_pred eeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 015918 201 KIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 255 (398)
Q Consensus 201 ~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~ 255 (398)
..+.+++++.++..+++...+...... ...+....+++.++|+|..+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 689999999999999998766321211 33466888999999999976554443
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=8.8e-12 Score=115.02 Aligned_cols=185 Identities=17% Similarity=0.184 Sum_probs=114.2
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc--ceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-..|+||+..++.+.+++... ..+.++|+|++|+|||++|+.+++.+..... ..+++. ....... +...
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~i~ 90 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGI-DVVR 90 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSH-HHHH
T ss_pred CHHHHHCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccCh-HHHH
Confidence 3467999999999999999763 3334899999999999999999988643321 122322 1111122 2222
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChhH--HHhcC
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQA--LINCG 198 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~--~~~~~ 198 (398)
++...+..... .+ .+++.+|||||++.. .....+...+.....++.+|++|..... ....+
T Consensus 91 ~~~~~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 22222221100 01 345889999999742 3333333333223456777877765421 11224
Q ss_pred CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHH-HHHHHH
Q 015918 199 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA-LKILGR 254 (398)
Q Consensus 199 ~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~-i~~l~~ 254 (398)
....+.+++++.++..+++...+..... ....+....+++.++|+|.. +..+..
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678999999999999999876532111 12346688999999999965 444433
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5.3e-11 Score=109.91 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=128.1
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcc--eEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-..++|++..++.+..++... ..+.++|+|++|+|||++|+.+++.+...... .+.+. .+..... +...
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~~~ 94 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDERGI-NVIR 94 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTCHHHH-HTTH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccccCch-HHHH
Confidence 3467999999999999999763 33458999999999999999999886433211 22222 1100000 0111
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChhH-H-HhcCC
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQA-L-INCGV 199 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~~-~-~~~~~ 199 (398)
.....+..... ...+++.+++|||++.. .....+...+......+.+|+|+..... . ...+.
T Consensus 95 ~~~~~~~~~~~--------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 95 EKVKEFARTKP--------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHSCC--------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHhhCC--------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11111111000 11256789999999743 3344444443333456778888765421 1 11124
Q ss_pred CeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc-CCHHHHHHHHHHhccCChhh
Q 015918 200 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMVPQME 278 (398)
Q Consensus 200 ~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~-~~~~~~~~~~~~l~~~~~~~ 278 (398)
...+.+++++.++..+++...+..... ....+....+++.++|+|..+..+...+.. ....................
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~ 238 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPED 238 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHH
Confidence 467899999999999999877633221 234577889999999999976655544432 21111222333333344455
Q ss_pred HHHHHHHhHh
Q 015918 279 IQEVLKISYD 288 (398)
Q Consensus 279 v~~~l~~~~~ 288 (398)
++.++...+.
T Consensus 239 i~~l~~~~~~ 248 (327)
T 1iqp_A 239 IREMMLLALK 248 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6555555444
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.30 E-value=1.8e-10 Score=105.96 Aligned_cols=186 Identities=13% Similarity=0.032 Sum_probs=115.0
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-c-ceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-E-GSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-..++|++..++.+.+++... ..+.++++||+|+|||++|+.+++.+.... . ..+.+... .........+...
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS-DERGIDVVRHKIK 90 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT---CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT-STTCTTTSSHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCC---CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc-cccChHHHHHHHH
Confidence 3456999999999999998763 333489999999999999999998863321 1 11222210 0000001111111
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChh-H-HHhcCC
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-A-LINCGV 199 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~-~~~~~~ 199 (398)
... ... ....+++.++|||+++.. .....+...+......+.+|+++.... . ....+.
T Consensus 91 ~~~----~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 91 EFA----RTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp HHH----HSC--------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred HHH----hcC--------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 100 000 001256789999999743 334555555554456677777776543 1 112245
Q ss_pred CeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 015918 200 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 255 (398)
Q Consensus 200 ~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~ 255 (398)
...+.+.+++.++..+++...+..... ....+....+++.++|++..+......
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 678999999999999999877643222 234567888999999999876554443
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.29 E-value=3.5e-10 Score=104.34 Aligned_cols=258 Identities=14% Similarity=0.092 Sum_probs=150.0
Q ss_pred cccCcccccchhHHHHHHHhccCC--CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL--TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~--~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 122 (398)
..-..|+|++..++.+..++.... ......++|+|++|+|||++|+.+++..... ..++. ........++.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~~~l~ 81 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKPGDLA 81 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCChHHHH
Confidence 345679999999999988875211 0234678899999999999999999886433 23333 11111111111
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--hHHHHHccCCCC------------------CCCc
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--QIEFLIGNLDWF------------------ASGS 182 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~------------------~~~~ 182 (398)
..+.. . ...+.+|+||+++... ....+...+... .+..
T Consensus 82 ----~~l~~-----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 82 ----AILAN-----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HHHTT-----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----HHHHH-----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11110 0 1345699999997532 223332211100 1235
Q ss_pred EEEEEeCChh-HHHh-cCC-CeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccC
Q 015918 183 RILITARDKQ-ALIN-CGV-NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK 259 (398)
Q Consensus 183 ~iliTsR~~~-~~~~-~~~-~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~ 259 (398)
.+|.+|.... .... ... ...+.+++++.++..+++...+..... ....+....+++.+.|+|..+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5666665432 1111 122 357899999999999999887633222 2335778999999999999988777665431
Q ss_pred C---------HHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhh-cCc-CCcChHHHHHHHHhcCccccccH
Q 015918 260 R---------KEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIA-CFL-VGEDRDIVTKYLNACEFFATSGI 328 (398)
Q Consensus 260 ~---------~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la-~~~-~~~~~~~l~~~~~~~~~~~~~~l 328 (398)
. ...+...... +......+++.++..+..+. .+. .+++...+...++.+.......+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 1 1122221111 11223456666767765544 333 33677777777765444334434
Q ss_pred HH-HhhccCeeeccCCce
Q 015918 329 EV-LVDKSLITISEYNKI 345 (398)
Q Consensus 329 ~~-L~~~~Ll~~~~~~~~ 345 (398)
+. +++.+++.....|+.
T Consensus 286 ~~~~i~~~li~~~~~g~~ 303 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRV 303 (324)
T ss_dssp HHHHHHTTSEEEETTEEE
T ss_pred hHHHHHhcchhcCCccce
Confidence 44 888999987766643
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.27 E-value=2.4e-10 Score=107.54 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=116.6
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-..++||+.+++.+...+... ...+.++|+|++|+||||+|+.+++.+....... ... ..... .+..+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-------~~~~~-~~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-------CGVCD-NCREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-------CSSSH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-------CcccH-HHHHH
Confidence 3456999999999999998753 2345789999999999999999998864332110 000 00000 00111
Q ss_pred HHH----HhcCCCCCCCCccchHHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChhH-
Q 015918 126 LST----LLNDGNMNKFPNIGLNFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA- 193 (398)
Q Consensus 126 ~~~----l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~~- 193 (398)
... +................+...+ .+++.+|||||++. ......+...+........+|++|.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 100 0000000000011222222222 34578999999974 34455555554443456667777764421
Q ss_pred -HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 015918 194 -LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF 255 (398)
Q Consensus 194 -~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~ 255 (398)
....+....+.+.+++.++..+++...+..... ....+....+++.++|+|..+..+...
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 122245678999999999999999876522111 223466888999999999988766543
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.20 E-value=1.9e-09 Score=100.10 Aligned_cols=258 Identities=13% Similarity=0.099 Sum_probs=151.2
Q ss_pred ccCcccccchhHHHHHHHhccCC--CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL--TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~--~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-..|+|++..++.+..++.... ....+.++|+|++|+|||+||+.+++.....| +.+. .........+ .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~----~~~~~~~~~~-~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA----APMIEKSGDL-A 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE----GGGCCSHHHH-H
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec----chhccchhHH-H
Confidence 45679999999999999886421 13456789999999999999999988864442 2222 1111111111 1
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCC------------------CCCcE
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWF------------------ASGSR 183 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~------------------~~~~~ 183 (398)
..+ .. ...+.+|+||+++.. .....+...+... .+...
T Consensus 99 ~~~--------------------~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 99 AIL--------------------TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp HHH--------------------HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred HHH--------------------Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111 00 235679999999743 2233332222110 11245
Q ss_pred EEEEeCChh-HHH-hc-CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcc--
Q 015918 184 ILITARDKQ-ALI-NC-GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-- 258 (398)
Q Consensus 184 iliTsR~~~-~~~-~~-~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~-- 258 (398)
+|.+|.... ..+ .. .....+.+++++.++..+++...+.... .....+....+++.+.|+|..+..+...+..
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 665554432 111 11 2337899999999999999987763222 2234577888999999999877665544311
Q ss_pred ----C---CHHHHHHHHHHhccCChhhHHHHHHHhHhcCchHHHHHHHHhhcCcCC-cChHHHHHHHHhcCccccccHH-
Q 015918 259 ----K---RKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVG-EDRDIVTKYLNACEFFATSGIE- 329 (398)
Q Consensus 259 ----~---~~~~~~~~~~~l~~~~~~~v~~~l~~~~~~L~~~~~~~l~~la~~~~~-~~~~~l~~~~~~~~~~~~~~l~- 329 (398)
. ........... +......+....+.++..++..... ++...+...++.+.......++
T Consensus 235 ~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~ 302 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEP 302 (338)
T ss_dssp HHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHH
T ss_pred HhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 0 11111111111 1122233555556666666555332 6777887777665555555666
Q ss_pred HHhhccCeeeccCCceEe
Q 015918 330 VLVDKSLITISEYNKIRM 347 (398)
Q Consensus 330 ~L~~~~Ll~~~~~~~~~~ 347 (398)
.|++.|++.....|+...
T Consensus 303 ~l~~~gli~~~~~g~~~t 320 (338)
T 3pfi_A 303 YLLANGYIERTAKGRIAS 320 (338)
T ss_dssp HHHHTTSEEEETTEEEEC
T ss_pred HHHHcCceecCCCccccc
Confidence 899999999887776543
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.1e-10 Score=106.33 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=102.4
Q ss_pred cccCcccccchhHHHHHHHhccCC-CCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----c--ceEEEeechhhhhcC
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGL-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----E--GSYFAHNVREAEETG 116 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~ 116 (398)
.+...+.||++|++.|...|...- .+..+.+.|+|++|+|||++++.+++.+.... + ..++++ .....
T Consensus 17 ~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~ 92 (318)
T 3te6_A 17 QKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC
T ss_pred CCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccC
Confidence 444558999999999998876321 15677899999999999999999999975432 1 234444 33445
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh---CCceEEEEEeCCCChHhHHHHHccCC---CCCCCcEEEEEeCC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL---TRKKVLIVFDDVNHPRQIEFLIGNLD---WFASGSRILITARD 190 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~l~~~l~---~~~~~~~iliTsR~ 190 (398)
+...++..+..++................+...+ .+++++++||+++....-+.+...+. .......+|.++..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecC
Confidence 6677777888887544221111111222222222 45789999999975432122221111 11122334444433
Q ss_pred hhH-HHhc------C-CCeeEEcCCCChhhhHHHHHHhh
Q 015918 191 KQA-LINC------G-VNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 191 ~~~-~~~~------~-~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
.+. ...+ + ....+.++|++.+|..+++..++
T Consensus 173 ~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 173 NVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp SCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 211 1111 1 22579999999999999998876
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.12 E-value=2.3e-10 Score=96.75 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=42.9
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.-..|+||+.+++.+.+.+.. ...+.++|+|++|+|||+|++.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 446799999999999999876 34567899999999999999999988644
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=5.7e-09 Score=97.34 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=113.6
Q ss_pred cccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc--Cc-ceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR--FE-GSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~--f~-~~~~~~~~~~~~~~~~~~~~ 121 (398)
..-..++|++..++.+..++... ..+.++|+|++|+||||+|+.+++.+... +. ....+. .+...... .
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~-~ 105 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGIS-I 105 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHH-H
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC---CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchH-H
Confidence 34567999999999999999763 22348999999999999999999886421 21 122222 11111222 2
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChh-HHH-hc
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALI-NC 197 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~~~-~~ 197 (398)
+.+....+...... .. ........-...+.+|+||+++.. .....+...+.......++|+++.... ..+ ..
T Consensus 106 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 106 VREKVKNFARLTVS-KP---SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp HTTHHHHHHHSCCC-CC---CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhhccc-cc---chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 22222222211110 00 000111111235579999999643 333444433332244566777665442 111 11
Q ss_pred CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 198 GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 198 ~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
+....+.+.+++.++..+.+...+..... ...++....+++.++|+|..+..+..
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 23468899999999999999887633222 23357789999999999987554443
No 23
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.06 E-value=3.7e-09 Score=99.29 Aligned_cols=204 Identities=11% Similarity=-0.010 Sum_probs=111.7
Q ss_pred cCcccccchhHHHHH---HHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 47 ENKLVGVDSRIEEIL---SLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 47 ~~~fvGR~~el~~l~---~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
-..|+|++...+.+. +.+.... ...+.++|+||+|+|||++|+.+++.+....+... +.+..-.+........+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTA-IAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEE-EEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccc-ccchhhhhcccchhHHHH
Confidence 457999999977754 4444433 33468999999999999999999999865433222 221111111222223333
Q ss_pred HHHHHHhcC--------------------C------CCCC----CCccchHHHHHhh-----CCc----eEEEEEeCCCC
Q 015918 124 ELLSTLLND--------------------G------NMNK----FPNIGLNFQSKRL-----TRK----KVLIVFDDVNH 164 (398)
Q Consensus 124 ~i~~~l~~~--------------------~------~~~~----~~~~~~~~l~~~l-----~~~----~~LlvlDd~~~ 164 (398)
..+...... . .... ........+.... .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 332221100 0 0000 0111111111111 122 56999999974
Q ss_pred h--HhHHHHHccCCCCCCCcEEEEEeCC------------h-hH-HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCC
Q 015918 165 P--RQIEFLIGNLDWFASGSRILITARD------------K-QA-LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD 228 (398)
Q Consensus 165 ~--~~~~~l~~~l~~~~~~~~iliTsR~------------~-~~-~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~ 228 (398)
. .....+...+....... +++++.. . .+ ....+....+.+++++.++..+++...+.... .
T Consensus 201 l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~--~ 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED--V 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT--C
T ss_pred cChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence 3 34445554444323333 4434321 1 01 12223456689999999999999987763322 2
Q ss_pred cchHHHHHHHHHHcC-CChHHHHHHHHH
Q 015918 229 ASYIELTHEAIKYAQ-GVPIALKILGRF 255 (398)
Q Consensus 229 ~~~~~~~~~i~~~~~-g~Pl~i~~l~~~ 255 (398)
....+....+++.+. |+|..+..+...
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 234577889999998 999877666554
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.06 E-value=8.5e-10 Score=96.99 Aligned_cols=176 Identities=14% Similarity=0.051 Sum_probs=104.4
Q ss_pred cCcccccc---hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 47 ENKLVGVD---SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 47 ~~~fvGR~---~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
-+.|+|+. ..++.+..++.. +..+.++|+|++|+||||||+.+++........+.|+... .... ..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-~~~~--~~----- 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-IHAS--IS----- 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-GGGG--SC-----
T ss_pred hhhccCCCCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-HHHH--HH-----
Confidence 35688743 556666666654 3467899999999999999999999876554445565521 1000 00
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--h--HHHHHccCCCC-C-CCcEEEEEeCChhH----
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--Q--IEFLIGNLDWF-A-SGSRILITARDKQA---- 193 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~--~~~l~~~l~~~-~-~~~~iliTsR~~~~---- 193 (398)
.+ .+ ..+ .++.+|+|||++... . ...+...+... . ....+|+|++....
T Consensus 96 ---------------~~----~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ---------------TA----LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ---------------GG----GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ---------------HH----HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 00 011 345699999996432 1 22232221110 1 22247777764321
Q ss_pred --HHhc---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 194 --LINC---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 194 --~~~~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.... .....+.+++++.++..+++...+..... ....+....+++.+.|++..+..+...+
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 220 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDRL 220 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1111 12278999999999999999887632221 2335778899999999998776655433
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.1e-08 Score=100.33 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=106.6
Q ss_pred ccCcccccchhHHHHHHHhccCC--------------CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGL--------------TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE 111 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~--------------~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~ 111 (398)
.-..++|++..++.|.+++.... .+..+.++|+||+|+|||++|+.+++.+. ++ .+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in---- 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN---- 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----
Confidence 44679999999999999986410 01347899999999999999999998872 22 22332
Q ss_pred hhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHH-HHhhCCceEEEEEeCCCChH-----hHHHHHccCCCCCCCcEEE
Q 015918 112 AEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ-SKRLTRKKVLIVFDDVNHPR-----QIEFLIGNLDWFASGSRIL 185 (398)
Q Consensus 112 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDd~~~~~-----~~~~l~~~l~~~~~~~~il 185 (398)
.+.... .......+....... .......... ......++.+|+||+++... .+..+...+.. ....+|
T Consensus 110 ~s~~~~-~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 110 ASDVRS-KTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp TTSCCC-HHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred CCCcch-HHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 221112 122222211111111 0111000000 00123568899999996321 12223222211 223344
Q ss_pred EEeCCh---hHHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 015918 186 ITARDK---QALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 253 (398)
Q Consensus 186 iTsR~~---~~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~ 253 (398)
+++... ...+.......+.+++++.++..+++...+...... ...+....+++.++|++..+..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 444322 223333456789999999999999987765321111 112457889999999776544443
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.00 E-value=1e-08 Score=98.45 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=110.8
Q ss_pred cccCcccccchhH---HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHH
Q 015918 45 ETENKLVGVDSRI---EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 45 ~~~~~fvGR~~el---~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 121 (398)
..-..++|.+..+ +.|...+.. +..+.++|+||+|+||||||+.+++.....|. .+. .. .....++
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~---~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~----a~-~~~~~~i 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA---GHLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS----AV-TSGVKEI 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH---TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE----TT-TCCHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc---CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE----ec-cCCHHHH
Confidence 3446799999998 778888876 34578999999999999999999988654421 111 10 1111111
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH--hHHHHHccCCCCCCCcEEEEEe-CChh---HHH
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR--QIEFLIGNLDWFASGSRILITA-RDKQ---ALI 195 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~--~~~~l~~~l~~~~~~~~iliTs-R~~~---~~~ 195 (398)
..++... .......++.+|+||+++... ..+.|+..+.. ....+|.+| .+.. ...
T Consensus 92 -r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 -REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp -HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred -HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 1111111 011124567899999997532 23333333321 334455444 3331 122
Q ss_pred hcCCCeeEEcCCCChhhhHHHHHHhhcCCC-----CCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 196 NCGVNKIYQIKELVHVDALKLLNQCAFGRD-----HPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 196 ~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
..+....+.+++++.++...++...+.... .......+..+.+++.++|++..+..+...+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 234567889999999999999988763311 2223456788999999999998776554443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.98 E-value=5.5e-09 Score=94.48 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=105.6
Q ss_pred cccCcccccchhHHHHHHHhccC-----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhh
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG-----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE 113 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~-----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 113 (398)
..-..++|.+..++.|.+.+... . ...+.++|+|++|+|||+||+.+++.+...+ +.+. .....
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHHH
Confidence 34567999999999998887431 1 3456799999999999999999998864432 2222 11110
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----------------HhHHHHHccCC-
Q 015918 114 ETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----------------RQIEFLIGNLD- 176 (398)
Q Consensus 114 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~- 176 (398)
.. ..... .......+.......+.+|+||+++.. ..+..++..+.
T Consensus 89 ~~-~~~~~-----------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 89 KK-FIGEG-----------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CC-STTHH-----------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred Hh-ccchH-----------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 00 00000 000111222223456789999999543 11222222211
Q ss_pred -CCCCCcEEEEEeCChhHHH---hc--CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHH
Q 015918 177 -WFASGSRILITARDKQALI---NC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIAL 249 (398)
Q Consensus 177 -~~~~~~~iliTsR~~~~~~---~~--~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i 249 (398)
....+..+|.||..+.... .. .....+.+++.+.++..+++...+........ .....+++.+.| .|..+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHH
Confidence 1134566777776542211 11 22347889999999999999887633222111 115677888877 56666
Q ss_pred HHHHHH
Q 015918 250 KILGRF 255 (398)
Q Consensus 250 ~~l~~~ 255 (398)
..++..
T Consensus 228 ~~l~~~ 233 (285)
T 3h4m_A 228 KAICTE 233 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.94 E-value=4.6e-08 Score=90.03 Aligned_cols=183 Identities=13% Similarity=0.050 Sum_probs=106.5
Q ss_pred cCcccccchhHHHHHHHhc----------cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc-
Q 015918 47 ENKLVGVDSRIEEILSLLG----------VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET- 115 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~----------~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~- 115 (398)
-..++|.+...+.|...+. ... ...+.++|+||+|+|||+||+.+++.....| +.+. .......
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~~~~ 91 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLVSKW 91 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHHTTT
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHhhcc
Confidence 3568999999999988772 111 3456799999999999999999998864432 2222 1110000
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-------------hHHHHHccC---CCC
Q 015918 116 -GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-------------QIEFLIGNL---DWF 178 (398)
Q Consensus 116 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l---~~~ 178 (398)
...... ....+.......+.+|+||+++... ....++..+ ...
T Consensus 92 ~g~~~~~--------------------~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 151 (322)
T 3eie_A 92 MGESEKL--------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 151 (322)
T ss_dssp GGGHHHH--------------------HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS
T ss_pred cchHHHH--------------------HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc
Confidence 000111 1111222223567899999996321 122222222 122
Q ss_pred CCCcEEEEEeCChhHHH---hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 015918 179 ASGSRILITARDKQALI---NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGR 254 (398)
Q Consensus 179 ~~~~~iliTsR~~~~~~---~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~~ 254 (398)
..+..||.||..+.... .......+.++..+.++-.+++..++..... .........+++.+.| .+-.|..+++
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666665542111 1124467888999999999999887733221 2234567888899887 5666666655
Q ss_pred Hh
Q 015918 255 FL 256 (398)
Q Consensus 255 ~l 256 (398)
..
T Consensus 230 ~a 231 (322)
T 3eie_A 230 DA 231 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.92 E-value=1.3e-08 Score=94.92 Aligned_cols=200 Identities=10% Similarity=0.032 Sum_probs=109.1
Q ss_pred ccCcccccchhHHHHHHHh-ccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEee----------------
Q 015918 46 TENKLVGVDSRIEEILSLL-GVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN---------------- 108 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L-~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~---------------- 108 (398)
.-..++|++..++.+.+++ ... .... ++|+||+|+||||+++.+++.+.......+++..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~--~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPR--DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTT--CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CHHHhcCCHHHHHHHHHHHhhCC--CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 3467999999999999988 542 2233 8999999999999999999864322111111100
Q ss_pred -------chhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCC
Q 015918 109 -------VREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFA 179 (398)
Q Consensus 109 -------~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~ 179 (398)
...............+.+..+...... .... .+ .-+..++-++|||+++.. .....+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~--~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV---DFQD--SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc---cccc--cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000000000000122222222111100 0000 00 002336779999999753 23334443333223
Q ss_pred CCcEEEEEeCChh-H-HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcch-HHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 180 SGSRILITARDKQ-A-LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASY-IELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 180 ~~~~iliTsR~~~-~-~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
.+..+|++|.... + ....+....+.+++++.++..+.+...+..... ... ++.+..+++.++|++..+..+...+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4667777775532 2 222345688999999999999999876532111 122 3568889999999998776555433
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.92 E-value=1.1e-08 Score=98.11 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=107.7
Q ss_pred Cccc-ccchhH--HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcc--eEEEeechhhhhcCCHHHHH
Q 015918 48 NKLV-GVDSRI--EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLR 122 (398)
Q Consensus 48 ~~fv-GR~~el--~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~ 122 (398)
..|+ |....+ ..+........ . ...++|+|++|+||||||+.+++.+...++. ++++. . ..+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~------~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPG-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTT-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----H------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCC-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----H------HHHH
Confidence 3455 765544 33344443322 2 6789999999999999999999987665432 34443 1 1122
Q ss_pred HHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----HhHHHHHccCCC-CCCCcEEEEEeCChh-----
Q 015918 123 KELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQ----- 192 (398)
Q Consensus 123 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----~~~~~l~~~l~~-~~~~~~iliTsR~~~----- 192 (398)
.++...+... ....+...+...+.+|+|||++.. ...+.+...+.. ...+..+|+||..+.
T Consensus 173 ~~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 173 NDLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 2333333211 122333334436779999999632 223333333211 134667888886532
Q ss_pred ----HHHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 015918 193 ----ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 193 ----~~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
+...+.....+.+++++.++..+++...+...... ...+....+++.+.|++.-+..+...+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAIIKL 309 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11112233678899999999999998776321111 122557889999999998776554433
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.92 E-value=2.1e-08 Score=92.43 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=107.7
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKEL 125 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i 125 (398)
.-.+++|++..++.+.+++... ...+.++++||+|+|||++|+.+++.+... .+.+. .+. .. .+.+...
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~~-~~-~~~i~~~ 92 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GSD-CK-IDFVRGP 92 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TTT-CC-HHHHHTH
T ss_pred CHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----ccc-cC-HHHHHHH
Confidence 4467999999999999999853 344678889999999999999999887422 23333 111 11 2222222
Q ss_pred HHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH---hHHHHHccCCCCCCCcEEEEEeCChhHH--HhcCCC
Q 015918 126 LSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR---QIEFLIGNLDWFASGSRILITARDKQAL--INCGVN 200 (398)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~---~~~~l~~~l~~~~~~~~iliTsR~~~~~--~~~~~~ 200 (398)
+........ ..+++.+|+|||++... ....+...+......+.+|+|+...... ...+..
T Consensus 93 ~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 93 LTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 222211111 12467899999998654 3344433332223456777777654311 111234
Q ss_pred eeEEcCCCChhhhHHHH-------HHhhcCCCCCCcchH-HHHHHHHHHcCCChHHHHHHHHHh
Q 015918 201 KIYQIKELVHVDALKLL-------NQCAFGRDHPDASYI-ELTHEAIKYAQGVPIALKILGRFL 256 (398)
Q Consensus 201 ~~~~l~~L~~~e~~~Ll-------~~~~~~~~~~~~~~~-~~~~~i~~~~~g~Pl~i~~l~~~l 256 (398)
..+.+++++.++-.+++ ...+..... ...+ +....+++.++|++..+......+
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 67999999988743332 222211111 1122 668889999999888655444333
No 32
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.91 E-value=1.1e-07 Score=88.74 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=105.8
Q ss_pred ccCcccccchhHHHHHHHhcc---------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 46 TENKLVGVDSRIEEILSLLGV---------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~---------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
.-..++|.+...+.|.+.+.. ......+.++|+||+|+|||+||+.+++.+...| +.+. ..
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~----~~--- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS----SS--- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE----HH---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee----HH---
Confidence 345699999999999987631 1113345689999999999999999999874331 2222 10
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-------------hHHHHHccC---CCCCC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-------------QIEFLIGNL---DWFAS 180 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l---~~~~~ 180 (398)
++ ...... .........+.......+.+|+||+++... ....++..+ .....
T Consensus 119 ---~l--------~~~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 ---DL--------VSKWMG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---HH--------HSCC----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ---HH--------hhhhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 000000 001111111222223578899999996432 122232222 11234
Q ss_pred CcEEEEEeCChhH---HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHHH
Q 015918 181 GSRILITARDKQA---LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF 255 (398)
Q Consensus 181 ~~~iliTsR~~~~---~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~~~ 255 (398)
+..||.||..+.. .........+.+++.+.++-.+++..++..... .........+++.+.| .+..|..+++.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~~ 263 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVKD 263 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5556666654421 111134467889999999999999877633221 1224557889999987 56667666654
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.91 E-value=9.3e-08 Score=85.75 Aligned_cols=171 Identities=12% Similarity=0.014 Sum_probs=95.5
Q ss_pred cCcccccchhHHHHHHH-------hccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHH
Q 015918 47 ENKLVGVDSRIEEILSL-------LGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLA 119 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~-------L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 119 (398)
...++|+...++.+... +........+.++|+|++|+|||+||+.+++..... .+.+.+ ..... .....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~--~~~i~~-~~~~~-g~~~~ 107 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP--FIKICS-PDKMI-GFSET 107 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCS--EEEEEC-GGGCT-TCCHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCC--EEEEeC-HHHhc-CCchH
Confidence 45689998887777763 222111567889999999999999999999885332 222221 10000 00000
Q ss_pred HHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh------------HhHHHHHccCCC---CCCCcEE
Q 015918 120 DLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP------------RQIEFLIGNLDW---FASGSRI 184 (398)
Q Consensus 120 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------------~~~~~l~~~l~~---~~~~~~i 184 (398)
..... ....+.......+.+|+||+++.. ..+..+...+.. ......|
T Consensus 108 ~~~~~-----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 108 AKCQA-----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHH-----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHH-----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 111222223456889999998542 123333333322 2234456
Q ss_pred EEEeCChhHHHh---c-CCCeeEEcCCCCh-hhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC
Q 015918 185 LITARDKQALIN---C-GVNKIYQIKELVH-VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 245 (398)
Q Consensus 185 liTsR~~~~~~~---~-~~~~~~~l~~L~~-~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 245 (398)
|.||..+..... . .....+.+++++. ++...++.... . ...+....+++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N----FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C----SCHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C----CCHHHHHHHHHHhcCC
Confidence 667766643332 1 2356789999988 66666665432 1 1235578888888873
No 34
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.90 E-value=6.9e-08 Score=89.31 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=102.2
Q ss_pred chhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHH----H
Q 015918 54 DSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLST----L 129 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~----l 129 (398)
+...+.+...+..+ .-.+.++++|++|+|||++|+.+++.+....... ... ..... .+..+... +
T Consensus 8 ~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~-------c~~c~-~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS-------CGHCR-GCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC-------CSCSH-HHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC-------CCCCH-HHHHHhcCCCCCE
Confidence 44556667766543 2356799999999999999999999865332110 000 00000 00010000 0
Q ss_pred hcCCCCCCCCccc---hHHHHHhh-----CCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCChh-HH-Hhc
Q 015918 130 LNDGNMNKFPNIG---LNFQSKRL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-AL-INC 197 (398)
Q Consensus 130 ~~~~~~~~~~~~~---~~~l~~~l-----~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~~-~~-~~~ 197 (398)
..-.......... +..+...+ .+++-++|||+++. ......++..+........+|++|.++. +. ...
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 0000000000111 11122222 24567999999974 3445556555554455667777766542 22 223
Q ss_pred CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 198 GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 198 ~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
+.+..+.+++++.++..+.+.... ....+.+..+++.++|.|..+..+
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 466789999999999999998765 112355788999999999866443
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.88 E-value=8.8e-08 Score=89.46 Aligned_cols=185 Identities=11% Similarity=0.007 Sum_probs=106.6
Q ss_pred cccCcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhh
Q 015918 45 ETENKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE 114 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 114 (398)
..-..++|.+..++.|.+.+.. .. ...+.++|+|++|+|||+||+.+++..... .+.+.. .....
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~~-~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSISA-SSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEEG-GGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEeh-HHhhc
Confidence 3445799999999999988742 11 345789999999999999999999876332 222221 11100
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHccCC---
Q 015918 115 TG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIGNLD--- 176 (398)
Q Consensus 115 ~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~--- 176 (398)
.. ..... ....+.......+.+|+||+++.. .....++..+.
T Consensus 156 ~~~g~~~~~--------------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 156 KWVGEGEKM--------------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp SSTTHHHHH--------------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred cccchHHHH--------------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 00 00011 111111222356789999999532 11222322221
Q ss_pred -CCCCCcEEEEEeCChh-H--HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHH
Q 015918 177 -WFASGSRILITARDKQ-A--LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKI 251 (398)
Q Consensus 177 -~~~~~~~iliTsR~~~-~--~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~ 251 (398)
.......||.||.... + .........+.++..+.++..+++...+...... ...+....+++.+.| .+..|..
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHH
Confidence 1123455665665432 1 1111334577899999999999987766332211 224568889999988 6667777
Q ss_pred HHHHh
Q 015918 252 LGRFL 256 (398)
Q Consensus 252 l~~~l 256 (398)
++...
T Consensus 294 l~~~a 298 (357)
T 3d8b_A 294 LCREA 298 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=2.9e-07 Score=85.41 Aligned_cols=184 Identities=11% Similarity=0.142 Sum_probs=106.7
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL 126 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~ 126 (398)
-..++|.+..++.|...+..+ +.+.++++||+|+||||+++.+++.+........+.. .. .+.......+ ....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g---~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~-~~-~~~~~~~~~i-r~~i 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE-LN-ASDDRGIDVV-RNQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE-EC-TTSCCSHHHH-HTHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE-Ec-CcccccHHHH-HHHH
Confidence 356889999999999988763 3334899999999999999999998643321111111 00 1111122211 1122
Q ss_pred HHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCCCCCcEEEEEeCChh-H-HHhcCCCee
Q 015918 127 STLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-A-LINCGVNKI 202 (398)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~~~~~~iliTsR~~~-~-~~~~~~~~~ 202 (398)
..+...... ..+.+-++|+|+++.. .....+...+........+++++.... + ....+.+..
T Consensus 98 ~~~~~~~~~--------------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 98 KDFASTRQI--------------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHHBCCS--------------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhhccc--------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 222111100 1234678999999642 233333333322234556666665432 1 112245568
Q ss_pred EEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 203 YQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 203 ~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
+.+.+++.++..+.+...+..... ...++....+++.++|.+.-+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999988776622221 233566888999999999854433
No 37
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.85 E-value=6.8e-07 Score=82.62 Aligned_cols=265 Identities=12% Similarity=0.115 Sum_probs=141.3
Q ss_pred ccCcccccchhHHHHHHHhccC--CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHH
Q 015918 46 TENKLVGVDSRIEEILSLLGVG--LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRK 123 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~--~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 123 (398)
.-..++|.+..++.+...+... .......++|+||+|+|||||++.++..+...+. ... +.. .....++ .
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~--~~~~~~l-~ 94 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV--LVKQGDM-A 94 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT--CCSHHHH-H
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH--hcCHHHH-H
Confidence 4457899998888888777532 0023467899999999999999999988744321 111 000 0011111 0
Q ss_pred HHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh--HhHHHHHccCCCC------------------CCCcE
Q 015918 124 ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP--RQIEFLIGNLDWF------------------ASGSR 183 (398)
Q Consensus 124 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~--~~~~~l~~~l~~~------------------~~~~~ 183 (398)
. +...+ .++.++++|+++.. ...+.+...+... -+...
T Consensus 95 ~---------------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 95 A---------------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp H---------------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred H---------------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0 01111 23347888998632 2222222111000 01122
Q ss_pred EEEEeCCh-hHHH--hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhccCC
Q 015918 184 ILITARDK-QALI--NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKR 260 (398)
Q Consensus 184 iliTsR~~-~~~~--~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~~l~~~~ 260 (398)
++-.++.. .... .........+++.+.++..+++.+.+.... .....+.+..+++.+.|.|..+..+...+....
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 33333332 2111 112334688999999999999987653211 223457789999999999987765554432100
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHH---hHhcCchHHHHHHHHhh-cC-cCCcChHHHHHHHHhcCccccccHH-HHhhc
Q 015918 261 KEVWENAISKLEMVPQMEIQEVLKI---SYDGLDDKEKNIFLDIA-CF-LVGEDRDIVTKYLNACEFFATSGIE-VLVDK 334 (398)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~v~~~l~~---~~~~L~~~~~~~l~~la-~~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~ 334 (398)
....-.......+..++.. .-..++...+.++..++ .| ..++..+.+...++.+....++..+ .|...
T Consensus 231 ------~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~ 304 (334)
T 1in4_A 231 ------TVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQA 304 (334)
T ss_dssp ------HHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHT
T ss_pred ------HHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 0000001112223333322 11235555555554433 23 3347777777777654333333344 88899
Q ss_pred cCeeeccCCceEec
Q 015918 335 SLITISEYNKIRMH 348 (398)
Q Consensus 335 ~Ll~~~~~~~~~~H 348 (398)
|+++....|++-..
T Consensus 305 g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 305 GFLARTPRGRIVTE 318 (334)
T ss_dssp TSEEEETTEEEECH
T ss_pred CCeecccccHHhhH
Confidence 99998877876443
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.85 E-value=5e-08 Score=86.86 Aligned_cols=186 Identities=11% Similarity=0.028 Sum_probs=99.4
Q ss_pred CcccccchhHHHHHHHhcc---CC------CCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEEILSLLGV---GL------TMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~---~~------~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
..++|.+...+.+.+++.. .. ....+.++|+|++|+|||++|+.+++..... .+.+.. ........
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~-~~~~~~~~- 80 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAG-AEFVEVIG- 80 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEET-TTTSSSST-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEech-HHHHhhcc-
Confidence 4678888887777665431 10 0344678999999999999999999886443 222221 01000000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-----------------hHHHHHccCCC--CC
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-----------------QIEFLIGNLDW--FA 179 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-----------------~~~~l~~~l~~--~~ 179 (398)
.. ........+.......+.+|+||+++... .+..++..+.. ..
T Consensus 81 ~~-----------------~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 81 GL-----------------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TH-----------------HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred Ch-----------------hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00 00001112222223457899999997531 12223222211 12
Q ss_pred CCcEEEEEeCChhHHH--hc---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 015918 180 SGSRILITARDKQALI--NC---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILG 253 (398)
Q Consensus 180 ~~~~iliTsR~~~~~~--~~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~l~ 253 (398)
.+..+|.||....... .. .....+.+++.+.++-.+++...+...... .........+++.+.|++- .|..++
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 3556666665543211 11 233678899999999999988766322221 1122234678888887654 565555
Q ss_pred HHh
Q 015918 254 RFL 256 (398)
Q Consensus 254 ~~l 256 (398)
...
T Consensus 223 ~~a 225 (262)
T 2qz4_A 223 NEA 225 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.83 E-value=2.7e-07 Score=84.96 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=102.1
Q ss_pred Cccc-ccchh--HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 48 NKLV-GVDSR--IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 48 ~~fv-GR~~e--l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
..|+ |.... ...+...+.... ...+.++|+|++|+||||||+.+++.+.......+++. . .++...
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~ 79 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQA 79 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHH
Confidence 3454 64443 334555554432 34578999999999999999999998755433344544 1 112222
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----hHHHHHccCCC-CCCCcEEEEEeCChhH------
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----QIEFLIGNLDW-FASGSRILITARDKQA------ 193 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----~~~~l~~~l~~-~~~~~~iliTsR~~~~------ 193 (398)
+...+... ....+..... ++.+|+|||++... ....+...+.. ...+..+|+|+..+..
T Consensus 80 ~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 80 MVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 22222111 1112222222 36699999996432 22222222211 1235567777754311
Q ss_pred ---HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 015918 194 ---LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 254 (398)
Q Consensus 194 ---~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l~~ 254 (398)
.........+.+++ +.++..+++...+..... ...++....+++.+ |++..+..+..
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~l~ 209 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGKIK 209 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHHHH
Confidence 11112336789999 999999999887632222 23357788899999 98876554433
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.82 E-value=3.4e-07 Score=84.15 Aligned_cols=186 Identities=11% Similarity=0.015 Sum_probs=102.8
Q ss_pred CcccccchhHHHHHHHhcc---------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEEILSLLGV---------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~---------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
.+++|-+...+.|.+.+.. ......+.++|+||+|+|||+||+.+++..... ..+.+.. ....
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~-~~l~----- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISS-SDLV----- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEEC-CSSC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEh-HHHH-----
Confidence 4677888777777766521 111345789999999999999999999886221 1122221 0000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-------------hHHHHHccC---CCCCCCc
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-------------QIEFLIGNL---DWFASGS 182 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l---~~~~~~~ 182 (398)
..... .........+.......+.+|+||+++... ....++..+ .....+.
T Consensus 84 ------------~~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 84 ------------SKWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------CSSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------hhhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 00000 000001111222223568899999997431 122222222 1123455
Q ss_pred EEEEEeCChhH-HH--hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHHHHh
Q 015918 183 RILITARDKQA-LI--NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRFL 256 (398)
Q Consensus 183 ~iliTsR~~~~-~~--~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~l~~~l 256 (398)
.||.||..+.. .+ .......+.++..+.++-.+++..++..... .........+++.+.|. +..|..+++..
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55656644311 11 1134467889999999999999877632221 12345688899999886 65677666544
No 41
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.82 E-value=2.1e-08 Score=91.67 Aligned_cols=169 Identities=10% Similarity=0.037 Sum_probs=94.2
Q ss_pred cccccchhHHHHHHHhccC------------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc----ceEEEeechhh
Q 015918 49 KLVGVDSRIEEILSLLGVG------------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE----GSYFAHNVREA 112 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~------------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 112 (398)
.++|.+...+.|.+.+... .......++|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 4899999999988765421 0144567999999999999999999988644321 122222 1000
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC-----------hHhHHHHHccCCCCCCC
Q 015918 113 EETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH-----------PRQIEFLIGNLDWFASG 181 (398)
Q Consensus 113 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~-----------~~~~~~l~~~l~~~~~~ 181 (398)
. ..... .........+... .+.+|+||+++. ......+...+......
T Consensus 111 ~-----------------~~~~g-~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 111 V-----------------GQYIG-HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp C-----------------CSSTT-CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred h-----------------hhccc-ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 0 00000 0000011111111 345999999972 23344444444333456
Q ss_pred cEEEEEeCChhHHHh-------c-CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHH
Q 015918 182 SRILITARDKQALIN-------C-GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKY 241 (398)
Q Consensus 182 ~~iliTsR~~~~~~~-------~-~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~ 241 (398)
..+|+|+........ . .....+.+++++.++..+++...+.... .....+....+.+.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~--~~~~~~~~~~l~~~ 235 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN--YQMTPEAETALRAY 235 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 677777754321111 1 1237889999999999999987763211 12233445555554
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.80 E-value=4.1e-07 Score=87.37 Aligned_cols=189 Identities=15% Similarity=0.081 Sum_probs=107.5
Q ss_pred cccCcccccchhHHHHHHHhcc---------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLGV---------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~---------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
..-..++|.+...+.|.+.+.. ......+.++|+||+|+|||+||+.+++.... ..|+. .+..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~~ 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISSS 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeHH
Confidence 3446799999999999887631 00034578999999999999999999988621 12222 1110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHccCCC---CC
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIGNLDW---FA 179 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~~---~~ 179 (398)
. +. ..... .........+.......+.+|+||+++.. .....++..+.. ..
T Consensus 203 -~---l~----~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 -D---LV----SKWLG-----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -H---HH----hhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 0 10 01000 11111222222222456889999999743 123334444332 13
Q ss_pred CCcEEEEEeCChhHH-H--hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHHH
Q 015918 180 SGSRILITARDKQAL-I--NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF 255 (398)
Q Consensus 180 ~~~~iliTsR~~~~~-~--~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l~~~ 255 (398)
.+..||.||..+... + .......+.++..+.++-..++..++.... ..........+++.+.| .+..|..+++.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 455666666544211 1 112345778888888888899887763221 11234557888999988 56566666554
Q ss_pred h
Q 015918 256 L 256 (398)
Q Consensus 256 l 256 (398)
.
T Consensus 348 a 348 (444)
T 2zan_A 348 A 348 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.79 E-value=1.2e-07 Score=89.77 Aligned_cols=184 Identities=13% Similarity=0.036 Sum_probs=102.0
Q ss_pred cCcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 47 ENKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
-..++|.+..++.|..++.. .. ...+.++|+|++|+|||+||+.+++..... .+.+.+ ....
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~---~~~v~~-~~l~--- 185 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNAT---FFNISA-ASLT--- 185 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEECS-CCC----
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCc---EEEeeH-HHhh---
Confidence 45799999999999998731 11 235789999999999999999998875432 122221 0000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHccC---C-CCC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIGNL---D-WFA 179 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l---~-~~~ 179 (398)
.... . .........+.......+.+|+||+++.. .....++..+ . ...
T Consensus 186 --~~~~--------g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 --SKYV--------G-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred --cccc--------c-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0000 0 00000111112222345679999999643 0111222111 1 112
Q ss_pred CCcEEEEEeCChhHH-H-hc-CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 015918 180 SGSRILITARDKQAL-I-NC-GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGRF 255 (398)
Q Consensus 180 ~~~~iliTsR~~~~~-~-~~-~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~l~~~ 255 (398)
....||.||...... . .. .....+.++..+.++-.+++...+..... ....+....+++.+.|..- .|..++..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345566566543211 1 11 23356889999999999999877633222 2234567889999987554 66666554
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.78 E-value=2.3e-08 Score=83.87 Aligned_cols=50 Identities=28% Similarity=0.369 Sum_probs=42.7
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.-..++||+.+++.+.+.+.. ...+.++|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345799999999999999976 34567899999999999999999998754
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.75 E-value=2.4e-07 Score=84.16 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=102.9
Q ss_pred cccCcccccchhHHHHHHHhccC---------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhh-
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG---------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE- 114 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~---------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~- 114 (398)
..-..++|.+..++.+.+.+... .....+.++|+||+|+|||++|+.+++.....| +.+.. .....
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~~-~~l~~~ 93 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNISA-ASLTSK 93 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEES-TTTSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEeeH-HHHhhc
Confidence 34467999999999999877321 002357899999999999999999998764321 22221 00000
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHc---cCCC
Q 015918 115 -TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIG---NLDW 177 (398)
Q Consensus 115 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~---~l~~ 177 (398)
....... ....+.......+.+|+||+++.. .....++. ....
T Consensus 94 ~~~~~~~~--------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 94 YVGDGEKL--------------------VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SCSCHHHH--------------------HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred ccchHHHH--------------------HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 0001111 111122222356789999999532 11112221 1111
Q ss_pred C--CCCcEEEEEeCChhH-HH--hcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH-HHHH
Q 015918 178 F--ASGSRILITARDKQA-LI--NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKI 251 (398)
Q Consensus 178 ~--~~~~~iliTsR~~~~-~~--~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-~i~~ 251 (398)
. .....+|.||..+.. .+ .......+.++..+.++-..++...+..... ....+....+++.+.|++- .+..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 1 134556666665421 11 1123466778888888888888776532111 1224567889999988875 6655
Q ss_pred HHHH
Q 015918 252 LGRF 255 (398)
Q Consensus 252 l~~~ 255 (398)
+++.
T Consensus 232 l~~~ 235 (297)
T 3b9p_A 232 LAKD 235 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.67 E-value=9.2e-07 Score=80.46 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=98.5
Q ss_pred CcccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
..++|.+...+.|.+++... .-...+.++|+||+|+|||+||+.+++..... .+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~---------- 81 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK---------- 81 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC----------
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE----------
Confidence 45888888888887766421 00345679999999999999999999886432 12222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHh----------------HHHHHccCC--CCC
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQ----------------IEFLIGNLD--WFA 179 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------------~~~l~~~l~--~~~ 179 (398)
..++. ....... .......+.......+.+|+||+++.... ...++..+. ...
T Consensus 82 ~~~l~----~~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELL----TMWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHH----HHHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHH----hhhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 11221 1121111 11122233333345689999999974211 223332221 113
Q ss_pred CCcEEEEEeCChhHH-H-hc---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChHH
Q 015918 180 SGSRILITARDKQAL-I-NC---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 248 (398)
Q Consensus 180 ~~~~iliTsR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~ 248 (398)
.+..||.||..+... + .. .....+.++..+.++-.+++...+......... ....++..+.|+|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 355666677554221 1 11 234578899999999889887766322211111 145566777777653
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.66 E-value=1.8e-07 Score=90.57 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=84.7
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechhhhhcCCHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 121 (398)
-..++||+.+++.+...+.. .....++|+|++|+|||++|+.+++.+.... ....++. .+..
T Consensus 179 ld~iiGr~~~i~~l~~~l~r---~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~----l~~~------ 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDMG------ 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C---------
T ss_pred CCCccCcHHHHHHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE----eeCC------
Confidence 34699999999999999976 2345678999999999999999999864432 1122222 1000
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhH-------H
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA-------L 194 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~-------~ 194 (398)
..... .........+.......+.+|+|| -..+....+.+.+. ....++|.+|..... .
T Consensus 246 ---------~~~~g-~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 246 ---------TKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ---------ccccc-hHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCH
Confidence 00000 111112233333334567899999 22222222333332 334566665554431 1
Q ss_pred HhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 195 INCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 195 ~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
...+....+.+++.+.++..+++....
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111245679999999999999998654
No 48
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.63 E-value=4.6e-07 Score=87.81 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=102.1
Q ss_pred CcccccchhHHHHHHHhccC-----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 48 NKLVGVDSRIEEILSLLGVG-----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
..++|.+..+++|.+++... . ...+.++|+|++|+|||++|+.+++..... .+.+. ...... .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn-~~~l~~-~ 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPEIMS-K 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEE-HHHHHT-S
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEE-chHhhh-h
Confidence 46899999999999887532 2 445679999999999999999998875322 22222 111110 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------HhHHHHHccCC--CCCCC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------RQIEFLIGNLD--WFASG 181 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~~~~~l~~~l~--~~~~~ 181 (398)
...... ......+.....+.+.+|+||+++.. .....|+..+. .....
T Consensus 278 ~~g~~~-----------------~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 278 LAGESE-----------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp CTTHHH-----------------HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred hcchhH-----------------HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 000000 00122233333566889999999411 11222322221 11335
Q ss_pred cEEEEEeCChhH-HHhc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHHH
Q 015918 182 SRILITARDKQA-LINC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGR 254 (398)
Q Consensus 182 ~~iliTsR~~~~-~~~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~l~~ 254 (398)
..||.||..+.. .+.. .....+.++..+.++-.+++..++........ .....+++.+.|. +..|..++.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHHH
Confidence 566666655421 1111 23456889999999999999877632221111 1156677777764 555655544
No 49
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.61 E-value=3.3e-07 Score=83.63 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=39.8
Q ss_pred CcccccchhHHHHHHHhccC-----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 48 NKLVGVDSRIEEILSLLGVG-----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~-----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+.++|++..++.+...+... .......++|+|++|+|||++|+.+++.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45899999999998877530 0023467889999999999999999988743
No 50
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.58 E-value=5.8e-08 Score=78.31 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=37.7
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.++|+...++.+.+.+.... .....+.|+|++|+|||++|+.+.+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999886433 344568899999999999999998764
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.58 E-value=8.4e-07 Score=81.02 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=43.6
Q ss_pred CcccccchhHHHHHHHhccCC----C--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 48 NKLVGVDSRIEEILSLLGVGL----T--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~----~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..++|.+..++.+...+.... + .....++|+|++|+|||++|+.+++.+.......+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 348999999999988875321 0 12357999999999999999999998754433334443
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.57 E-value=2.1e-07 Score=96.84 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=83.3
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cc-eEEEeechhhhhcCCH
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EG-SYFAHNVREAEETGKL 118 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~-~~~~~~~~~~~~~~~~ 118 (398)
.-..++||+.+++.+.+.+.. ...+.++|+|++|+|||++|+.+++.+.... .. ++++. ......
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~---~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l~~---- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSLLA---- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC---SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C---------
T ss_pred CCcccCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHhhc----
Confidence 345699999999999999976 3345678999999999999999999864321 11 22222 111000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhC-CceEEEEEeCCCChH---------h-HHHHHccCCCCCCCcEEEEE
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT-RKKVLIVFDDVNHPR---------Q-IEFLIGNLDWFASGSRILIT 187 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~~---------~-~~~l~~~l~~~~~~~~iliT 187 (398)
.. .... .........+..... +.+.+|+||+++... . ...+...+. .....+|.+
T Consensus 240 ---------g~--~~~g-~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 240 ---------GA--KYRG-EFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred ---------cC--ccch-HHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 00 0000 000001111222222 467899999997532 1 111222221 234445655
Q ss_pred eCChhH------HHhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 188 ARDKQA------LINCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 188 sR~~~~------~~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
|..... ....+....+.+++++.++..+++....
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 544332 1112344568999999999999987543
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.55 E-value=6.8e-07 Score=81.39 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=39.6
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.++|+...++.+.+.+.... .....++|+|++|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999998876533 345678899999999999999998864
No 54
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2e-06 Score=80.33 Aligned_cols=171 Identities=14% Similarity=0.165 Sum_probs=96.9
Q ss_pred CcccccchhHHHHHHHhcc-----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 48 NKLVGVDSRIEEILSLLGV-----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
.++.|-++..++|.+.+.- +. ..++-++++||||+|||.||+.+++.....| +.+. ........
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~sk~ 222 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELVQKY 222 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGSCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhhccc
Confidence 4578888888888876531 11 4567899999999999999999998865542 2222 11111100
Q ss_pred --CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCC--
Q 015918 117 --KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLD-- 176 (398)
Q Consensus 117 --~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~-- 176 (398)
.....+..+ +...-...|++|+||+++... .+..++..+.
T Consensus 223 vGese~~vr~l--------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 223 IGEGSRMVREL--------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp TTHHHHHHHHH--------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHH--------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111222222 222224578999999996310 1222322221
Q ss_pred CCCCCcEEEEEeCChhH-HHh----cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 177 WFASGSRILITARDKQA-LIN----CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 177 ~~~~~~~iliTsR~~~~-~~~----~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
....+..||.||..+.. .+. ......+.++.-+.++-.++|+.++......... -...+++.|.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 12345556666654421 111 1345678898888888889988776332221111 1667888887643
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.50 E-value=7.3e-07 Score=91.76 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC------cceEEEeechhhh----hcC
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAE----ETG 116 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~----~~~ 116 (398)
-..++||+.+++.+.+.|.. .....++|+|++|+|||++|+.+++.+.... ...+|........ ...
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~---~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCR---RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 35799999999999999976 3456678999999999999999998864321 2223322111110 000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----------HhHHHHHccCCCCCCCcEEEE
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILI 186 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------~~~~~l~~~l~~~~~~~~ili 186 (398)
.+... ....+......++.+|+||+++.. .....++..+.. .....+|.
T Consensus 262 ~~e~~--------------------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~ 320 (758)
T 1r6b_X 262 DFEKR--------------------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIG 320 (758)
T ss_dssp CHHHH--------------------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEE
T ss_pred hHHHH--------------------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEE
Confidence 11111 112222222345789999999744 122223322222 34555666
Q ss_pred EeCChhHHH-------hcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 187 TARDKQALI-------NCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 187 TsR~~~~~~-------~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
+|..+.... .......+.+++.+.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 665433211 11234578899999999998887644
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.48 E-value=7.7e-07 Score=91.52 Aligned_cols=148 Identities=13% Similarity=0.090 Sum_probs=85.5
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC-----cceEEEeechhhhhcCCHHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLADL 121 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 121 (398)
-..++||+.+++.+...+.. .....++|+|++|+|||++|+.+++.+.... ....++. .+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~---~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~~------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDM------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C---------
T ss_pred CCCccCchHHHHHHHHHHhC---CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ecc-------
Confidence 35699999999999999976 3345688999999999999999999864321 1111221 000
Q ss_pred HHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCChhHH-------
Q 015918 122 RKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQAL------- 194 (398)
Q Consensus 122 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~~~~------- 194 (398)
+....+ .........+.......+.+|+|| ...+....+.+.+. .....+|.+|......
T Consensus 245 --------g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 --------GTKYRG-EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred --------cccccc-hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000000 111223333333444678899999 22222223333332 3455666666544311
Q ss_pred HhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 195 INCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 195 ~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
...+....+.+++.+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111244679999999999999998654
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=2.2e-06 Score=81.29 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=95.3
Q ss_pred CcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC-
Q 015918 48 NKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG- 116 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 116 (398)
.++.|-++..++|.+.+.- ..-..++-++++||||+|||.||+.+++.....| +.+. ........
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhhccccc
Confidence 4577888888888776531 0114568899999999999999999999865442 2222 11111100
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------H---hHHHHHccCC--C
Q 015918 117 -KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------R---QIEFLIGNLD--W 177 (398)
Q Consensus 117 -~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~--~ 177 (398)
.....+. ......-...|++|+||+++.. . .+..++..+. .
T Consensus 257 Gese~~ir--------------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 257 GESARIIR--------------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SHHHHHHH--------------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHH--------------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0011111 1122222457899999999521 0 1222332221 1
Q ss_pred CCCCcEEEEEeCChhHHH-hc-C---CCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh
Q 015918 178 FASGSRILITARDKQALI-NC-G---VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 246 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~~-~~-~---~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 246 (398)
...+..||.||..+.... .+ + ....+.++.-+.++-.++|..++......... -...+++.|.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 134556777775543221 11 1 23467788778888888887766332211111 1567788887643
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.3e-06 Score=79.33 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=87.7
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh---ccCcceEEEeechhhhh-cCCHHHHHHHHHH
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS---RRFEGSYFAHNVREAEE-TGKLADLRKELLS 127 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 127 (398)
|-++.++.|...+.. ++.+..+++||+|+||||+|..+++... ...+...++. .+. .....++ .++..
T Consensus 1 g~~~~~~~L~~~i~~---~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEK---SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHC---CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHH
Confidence 445667778888775 3367899999999999999999987521 1233444443 111 2222222 22333
Q ss_pred HHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEeCCh-hHHHhcCCCeeEE
Q 015918 128 TLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALINCGVNKIYQ 204 (398)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTsR~~-~~~~~~~~~~~~~ 204 (398)
...... ..+++-++|||+++. ......|+..+...++.+.+|++|.++ .+.+..... .++
T Consensus 73 ~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 73 FLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred HHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 332111 123456899999974 344555555554445566677666444 333333333 899
Q ss_pred cCCCChhhhHHHHHHhh
Q 015918 205 IKELVHVDALKLLNQCA 221 (398)
Q Consensus 205 l~~L~~~e~~~Ll~~~~ 221 (398)
+.+++.++..+.+...+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998776
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.45 E-value=2e-06 Score=76.62 Aligned_cols=50 Identities=26% Similarity=0.222 Sum_probs=37.0
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
..|+|+...++.+.+.+.... .....++|+|++|+|||++|+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 458999999999887765432 33467889999999999999999987543
No 60
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.4e-06 Score=79.10 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=94.9
Q ss_pred cccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC--
Q 015918 49 KLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG-- 116 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~-- 116 (398)
++.|-++..++|.+.+.- ..-..++-++++||+|+|||.||+.++......| +.+. ...+....
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~sk~vG 285 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQKYVG 285 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCCCSSS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhcccCC
Confidence 688888888888775421 1115678899999999999999999998865542 2222 11111100
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH----------------hHHHHHccCC--CC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR----------------QIEFLIGNLD--WF 178 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------------~~~~l~~~l~--~~ 178 (398)
.....+.. .+...-...|++|+||+++... .+..++..+. ..
T Consensus 286 esek~ir~--------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 286 EGARMVRE--------------------LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp HHHHHHHH--------------------HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHH--------------------HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 11111111 2222234578999999995310 1111222221 11
Q ss_pred CCCcEEEEEeCChhH-HHh----cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC
Q 015918 179 ASGSRILITARDKQA-LIN----CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 245 (398)
Q Consensus 179 ~~~~~iliTsR~~~~-~~~----~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 245 (398)
..+..||.||..+.. .+. .+....+.++..+.++-.++|+.++......... -...+++.|.|.
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv---dl~~LA~~T~Gf 414 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNS 414 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHHCCSC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHHCCCC
Confidence 334555666644421 111 1345678888888888888887776332211111 156778888764
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.44 E-value=2.5e-06 Score=75.67 Aligned_cols=184 Identities=13% Similarity=0.013 Sum_probs=96.1
Q ss_pred ccCcccccchhHHHHHHHhcc---C------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC
Q 015918 46 TENKLVGVDSRIEEILSLLGV---G------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG 116 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~---~------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 116 (398)
.-..++|.+...+.+.+.+.. . .....+.++|+|++|+||||||+.+++.....| +.+.. .....
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~-~~~~~-- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG-SDFVE-- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECS-CSSTT--
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeH-HHHHH--
Confidence 335688888777777665421 0 002245689999999999999999998764332 22221 00000
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----------------HhHHHHHccCC--CC
Q 015918 117 KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----------------RQIEFLIGNLD--WF 178 (398)
Q Consensus 117 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~--~~ 178 (398)
.... .........+.......+.+++||+++.. ..+..++..+. ..
T Consensus 84 ---------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 ---------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp ---------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred ---------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0000 00000112222233456789999998321 11222322221 11
Q ss_pred CCCcEEEEEeCChh-HHHhc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCC-ChHHHHHH
Q 015918 179 ASGSRILITARDKQ-ALINC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKIL 252 (398)
Q Consensus 179 ~~~~~iliTsR~~~-~~~~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pl~i~~l 252 (398)
..+..+|.||..+. +.+.. .....+.++..+.++-.+++...+........ .....++..+.| ++.-|..+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHHH
Confidence 33455666665542 11111 22356778888888888888766522211111 114556777888 77777655
Q ss_pred HH
Q 015918 253 GR 254 (398)
Q Consensus 253 ~~ 254 (398)
+.
T Consensus 225 ~~ 226 (257)
T 1lv7_A 225 VN 226 (257)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 62
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.41 E-value=1.1e-06 Score=73.49 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=33.0
Q ss_pred cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 53 VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 53 R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+...++.+.+++..-.......++|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555555555443223457899999999999999999999875
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.9e-06 Score=80.27 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=40.1
Q ss_pred CcccccchhHHHHHHHhcc-----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 48 NKLVGVDSRIEEILSLLGV-----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.++.|-+...+.|.+.+.- +. ..++-++++||||+|||+||+.+++...-.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678888888888776531 11 456789999999999999999999887544
No 64
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.35 E-value=2.5e-05 Score=75.27 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=60.5
Q ss_pred EEEEEeCCCC--hHhHHHHHccCCCCCCCcEEEEEe---------CC----h--hHHHhcCCCeeEEcCCCChhhhHHHH
Q 015918 155 VLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITA---------RD----K--QALINCGVNKIYQIKELVHVDALKLL 217 (398)
Q Consensus 155 ~LlvlDd~~~--~~~~~~l~~~l~~~~~~~~iliTs---------R~----~--~~~~~~~~~~~~~l~~L~~~e~~~Ll 217 (398)
-+++||+++. .+....+...+....... +|+.| .+ + -.....+.+..+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCE-EEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 4999999974 445666666665444443 44333 11 1 11122345567899999999999999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHc-CCChHHHHHHHH
Q 015918 218 NQCAFGRDHPDASYIELTHEAIKYA-QGVPIALKILGR 254 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Pl~i~~l~~ 254 (398)
..++.... ....++....+++.+ .|.|.....+..
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 87752111 123356678888888 888886655544
No 65
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=5.4e-06 Score=77.70 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=92.7
Q ss_pred CcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC-
Q 015918 48 NKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG- 116 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 116 (398)
.++.|-++..++|.+.+.- .....++-++++||+|+|||.||+.++......| +.+. ...+....
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f---i~v~-~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF---LRIV-GSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE---EEEE-SGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE---EEEE-HHHhhhccC
Confidence 3577888888887775521 1114568899999999999999999998865542 1222 11111100
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------H---hHHHHHccCC--C
Q 015918 117 -KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------R---QIEFLIGNLD--W 177 (398)
Q Consensus 117 -~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~--~ 177 (398)
.....+..+ +...-...|++|+||+++.. . .+..++..+. .
T Consensus 258 Gesek~ir~l--------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 258 GDGPRLCRQI--------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SHHHHHHHHH--------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHH--------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111122221 22222456899999998521 0 1122222211 1
Q ss_pred CCCCcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC
Q 015918 178 FASGSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV 245 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 245 (398)
...+..||.||..+.... .+ .....+.++.-+.++-.++|..++......... -...+++.+.|.
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~Gf 387 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDL 387 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCC
Confidence 234555666665443222 11 122457777778888888887766332211110 156677787664
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.31 E-value=7.2e-07 Score=79.66 Aligned_cols=176 Identities=14% Similarity=0.139 Sum_probs=92.7
Q ss_pred ccCcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 46 TENKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
.-..++|.+...+.+.+.+.. .. ...+.++|+|++|+|||+||+.+++.....|- .+.. .....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~~-~~~~~- 82 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMGG-SSFIE- 82 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCCS-CTTTT-
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eech-HHHHH-
Confidence 345789999988888876641 11 22345889999999999999999988654321 1110 00000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHh-----------------HHHHHccCCCC
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQ-----------------IEFLIGNLDWF 178 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------------~~~l~~~l~~~ 178 (398)
..... ........+.......+.+|+||+++.... +..++..+...
T Consensus 83 ------------~~~~~-----~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 ------------MFVGL-----GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp ------------SCSSS-----CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred ------------hhcch-----HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 00000 011111222222234678999999964321 12222222211
Q ss_pred ---CCCcEEEEEeCChhHH-H-hc---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCChH
Q 015918 179 ---ASGSRILITARDKQAL-I-NC---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 247 (398)
Q Consensus 179 ---~~~~~iliTsR~~~~~-~-~~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 247 (398)
.....+|.||..+... + .. .....+.+++.+.++-.+++...+......... ....+++.+.|+|-
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~g~~g 219 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV---NLQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC---CTTTTTSSSCSSCH
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc---CHHHHHHHcCCCCH
Confidence 1234566666544211 1 11 123567888889999999987765322111110 13445666666654
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.29 E-value=1.1e-05 Score=77.62 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=96.6
Q ss_pred CcccccchhHHHHHHHhccC---------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEEILSLLGVG---------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~---------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
..++|.+..++++.+.+..- ....++.++|+||+|+|||+||+.++......| +.++. ...... ..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is~-~~~~~~-~~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHISG-SDFVEL-FV 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEG-GGTTTC-CT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCH-HHHHHH-Hh
Confidence 46888888777766654310 002345688999999999999999998764332 22221 011000 00
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh----------------HhHHHHHccCC--CCCC
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP----------------RQIEFLIGNLD--WFAS 180 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~--~~~~ 180 (398)
. .........+.......+.+|+||+++.. ..+..++..+. ....
T Consensus 91 g-----------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 91 G-----------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp T-----------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred c-----------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00000122233334467899999999532 11223332221 1123
Q ss_pred CcEEEEEeCChhHHH--hc---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHH
Q 015918 181 GSRILITARDKQALI--NC---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKIL 252 (398)
Q Consensus 181 ~~~iliTsR~~~~~~--~~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~l 252 (398)
+..||.+|..+.... .. .....+.+++.+.++-.+++..++......... ....+++.+.|+. .-|..+
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~sgadL~~l 228 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFVGADLENL 228 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCcHHHHHHH
Confidence 556666666553221 11 233477888888888888887665332211111 1555888888887 344443
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=4.8e-06 Score=78.87 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=96.7
Q ss_pred CcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcC-
Q 015918 48 NKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG- 116 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 116 (398)
.++.|-++..++|.+.+.- .....++-++++||||+|||.||+.++......| +.+. ........
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLA-APQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEe-hhhhhhccc
Confidence 4688888888888776421 1114568899999999999999999998865442 2222 11111100
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCCh-------------H---hHHHHHccCCC--
Q 015918 117 -KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHP-------------R---QIEFLIGNLDW-- 177 (398)
Q Consensus 117 -~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------------~---~~~~l~~~l~~-- 177 (398)
.....+..++ ...-...|++|+||+++.. . .+..++..+..
T Consensus 257 Gese~~ir~lF--------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 257 GEGAKLVRDAF--------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp SHHHHHHHHHH--------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHH--------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 1111222221 1122346899999999421 0 11223333221
Q ss_pred CCCCcEEEEEeCChhHHH-hc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCC-hHHHHH
Q 015918 178 FASGSRILITARDKQALI-NC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKI 251 (398)
Q Consensus 178 ~~~~~~iliTsR~~~~~~-~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Pl~i~~ 251 (398)
...+..||.||..+.... .+ .....+.++.-+.++-.++|+.++......... -...+++.|.|. +--|..
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCCHHHHHH
Confidence 133455666665543221 11 123567888888888888887665322211110 056778888764 333443
Q ss_pred HH
Q 015918 252 LG 253 (398)
Q Consensus 252 l~ 253 (398)
++
T Consensus 394 l~ 395 (434)
T 4b4t_M 394 VT 395 (434)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.26 E-value=2.8e-07 Score=74.03 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=35.4
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
-.++|++..++++.+.+.... .....+.|+|++|+|||++|+.+.+..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999988876422 234568899999999999999987654
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.25 E-value=4.9e-06 Score=85.54 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=85.1
Q ss_pred cCcccccchhHHHHHHHhccCC----C--CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHH
Q 015918 47 ENKLVGVDSRIEEILSLLGVGL----T--MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLAD 120 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~----~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 120 (398)
...++|.+..++.+...+.... + .....++++||+|+|||++|+.+++.+.......+.+.+ ..........
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~-s~~~~~~~~~- 567 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM-SEYMEKHSTS- 567 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG-GGGCSSCCCC-
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec-hhcccccccc-
Confidence 3568999999998888775321 1 112369999999999999999999987544333344431 1111111100
Q ss_pred HHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCC--hHhHHHHHccCCC-----------CCCCcEEEEE
Q 015918 121 LRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDW-----------FASGSRILIT 187 (398)
Q Consensus 121 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~~~~~~l~~~l~~-----------~~~~~~iliT 187 (398)
.......+.. ....+|+||+++. ......|+..+.. ...++.+|+|
T Consensus 568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 0011122211 2345999999974 3333333322211 1245678888
Q ss_pred eCChh-----H---------HHhcC-CCeeEEcCCCChhhhHHHHHHhh
Q 015918 188 ARDKQ-----A---------LINCG-VNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 188 sR~~~-----~---------~~~~~-~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
|.... . ..... ....+.+++++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 86311 0 01112 33688999999999988886654
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.22 E-value=7.4e-06 Score=83.35 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=97.6
Q ss_pred CcccccchhHHHHHHHhcc----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCC
Q 015918 48 NKLVGVDSRIEEILSLLGV----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK 117 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 117 (398)
.++.|-++.+++|.+.+.- .....++-|+++||+|+|||+||+.+++..... .+.+. ...
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~-~~~------ 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPE------ 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEE-HHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEE-hHH------
Confidence 3577888888888876531 111456789999999999999999999775433 22222 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChH-------------hHHHHHccCCC--CCCCc
Q 015918 118 LADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPR-------------QIEFLIGNLDW--FASGS 182 (398)
Q Consensus 118 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-------------~~~~l~~~l~~--~~~~~ 182 (398)
+...... ..+......+.......|++|+||+++... ....|+..+.. ...+.
T Consensus 274 -----------l~sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----------HHSSCTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----------hhcccch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 1110000 001112222333345679999999995210 12222222211 12344
Q ss_pred EEEEEeCChh-HHHhc----CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHH
Q 015918 183 RILITARDKQ-ALINC----GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKIL 252 (398)
Q Consensus 183 ~iliTsR~~~-~~~~~----~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~l 252 (398)
.||.+|..+. +.+.+ .....++++..+.++=.++++.++........ -....+++.+.|+. .-|..+
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~GfsgaDL~~L 414 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCCHHHHHHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCCHHHHHHH
Confidence 4555554432 22211 23457888888888888888776532211111 11667888887754 334433
No 72
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.21 E-value=2e-05 Score=71.18 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++.++|+||+|+|||+||+.+++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456789999999999999999999988444
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.07 E-value=4.1e-05 Score=74.09 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=38.8
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+.++|++..++.+...+... ..++|+|++|+|||+||+.+++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 44999999999998887653 37889999999999999999887643
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.06 E-value=0.00011 Score=64.77 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=88.2
Q ss_pred CcccccchhHHHHHHHhcc---------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCH
Q 015918 48 NKLVGVDSRIEEILSLLGV---------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL 118 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~---------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 118 (398)
..++|.+....++.+.... ..-.-.+-++|+|++|+|||||++.++...... .+.+.. ..... ...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~~-~~~~~-~~~ 90 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVE-MFV 90 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH-HHHHH-SCT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEeeH-HHHHH-HHh
Confidence 4577776665555443321 000112348999999999999999999886522 233321 00000 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccchHHHHHhh-CCceEEEEEeCCCChH----------------hHHHHHccCCCC--C
Q 015918 119 ADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TRKKVLIVFDDVNHPR----------------QIEFLIGNLDWF--A 179 (398)
Q Consensus 119 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~----------------~~~~l~~~l~~~--~ 179 (398)
... ......+.+.. ...+.++++||++... ....+...+... .
T Consensus 91 ~~~------------------~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 91 GVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp THH------------------HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred hHH------------------HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 000 00111122222 2457899999984211 122232222211 2
Q ss_pred CCcEEEEEeCChhHHHh-----cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHHHH
Q 015918 180 SGSRILITARDKQALIN-----CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALKIL 252 (398)
Q Consensus 180 ~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~~l 252 (398)
....++.++..+..... ......+.++..+.++-.+++............ .....+++.+.|+- .-|..+
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~~~dl~~~ 228 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGADLENL 228 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc---cCHHHHHHHcCCCCHHHHHHH
Confidence 22344455555533221 123457888888888888888766522211111 11456777777764 334433
No 75
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.06 E-value=1.2e-05 Score=68.39 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=42.0
Q ss_pred ccCcccccch----hHHHHHHHhccCCCC-CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 46 TENKLVGVDS----RIEEILSLLGVGLTM-DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 46 ~~~~fvGR~~----el~~l~~~L~~~~~~-~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.-..|++... .++.+.+++...... ..+.++|+|++|+|||+||+.+++........+.|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3455776543 445556666543211 2278999999999999999999998766655566655
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.06 E-value=3.5e-05 Score=72.31 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=36.2
Q ss_pred cccccchhHHHHHHHhc----c-----------------------CCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 49 KLVGVDSRIEEILSLLG----V-----------------------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~----~-----------------------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++|.+...+.|...+. . ........++++|++|+|||++|+.+++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 47888888877776661 0 0002345789999999999999999998873
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.03 E-value=5.2e-05 Score=74.59 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=79.1
Q ss_pred cccccchhHHHHHHHhc----cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHH
Q 015918 49 KLVGVDSRIEEILSLLG----VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE 124 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~----~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 124 (398)
.++|-++..+.+...+. ... .....++|+||+|+||||||+.++..+...|- .+.. ... .....+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~-~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~---~i~~-~~~---~~~~~~~g~ 153 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKS-LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV---RISL-GGV---RDESEIRGH 153 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSS-CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE---EECC-CC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhccc-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE---EEEe-ccc---chhhhhhhH
Confidence 47888777777765442 111 24568999999999999999999988744421 1110 000 011111100
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHhhCCceEEEEEeCCCChHh------HHHHHccCCCC---------------CCCcE
Q 015918 125 LLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQ------IEFLIGNLDWF---------------ASGSR 183 (398)
Q Consensus 125 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~~l~~~l~~~---------------~~~~~ 183 (398)
.....+ .........+.. ......+++||+++.... ...++..+... ...+.
T Consensus 154 ~~~~ig------~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 154 RRTYVG------AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHHhc------cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 000000 001111222222 222333889999974321 12233332110 03455
Q ss_pred EEEEeCChhH--HHhcCCCeeEEcCCCChhhhHHHHHHhh
Q 015918 184 ILITARDKQA--LINCGVNKIYQIKELVHVDALKLLNQCA 221 (398)
Q Consensus 184 iliTsR~~~~--~~~~~~~~~~~l~~L~~~e~~~Ll~~~~ 221 (398)
+|.||..... .+..+....+.+++++.++-.+++..++
T Consensus 227 iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6666654321 1111233678999999999999887754
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.02 E-value=0.00011 Score=65.77 Aligned_cols=182 Identities=15% Similarity=0.085 Sum_probs=92.9
Q ss_pred cccCcccccchhHHHHHHHhccC---------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLGVG---------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~---------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
..-..++|.+...+++.+....- .-.-.+-++|+|++|+|||||++.++...... .+.+.. ......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~~-~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH-HHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEecH-HHHHHH
Confidence 34457899888777776654210 00112338999999999999999999886522 233331 000000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHH-HHHhhCCceEEEEEeCCCCh----------------HhHHHHHccCCCC
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNF-QSKRLTRKKVLIVFDDVNHP----------------RQIEFLIGNLDWF 178 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDd~~~~----------------~~~~~l~~~l~~~ 178 (398)
..... ...... +.......+.++++||++.. ..+..+...+...
T Consensus 113 -~~~~~------------------~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 113 -FVGVG------------------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp -TTTHH------------------HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred -HhhHH------------------HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 00000 001111 11112245789999998421 1122233222211
Q ss_pred --CCCcEEEEEeCChhHHH---h--cCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-HHHH
Q 015918 179 --ASGSRILITARDKQALI---N--CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-IALK 250 (398)
Q Consensus 179 --~~~~~iliTsR~~~~~~---~--~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l~i~ 250 (398)
.....++.++..+.... . ......+.+++.+.++-.+++...+........ .....++..+.|+. .-|.
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc---cCHHHHHHHcCCCCHHHHH
Confidence 12233444555443211 1 124457888888988888888766532211111 11456777777766 4444
Q ss_pred HH
Q 015918 251 IL 252 (398)
Q Consensus 251 ~l 252 (398)
.+
T Consensus 251 ~l 252 (278)
T 1iy2_A 251 NL 252 (278)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.02 E-value=9.8e-05 Score=71.39 Aligned_cols=179 Identities=15% Similarity=0.094 Sum_probs=95.0
Q ss_pred cccCcccccchhHHHHHHHhc---cC------CCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhc
Q 015918 45 ETENKLVGVDSRIEEILSLLG---VG------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET 115 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~---~~------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 115 (398)
..-.+++|.+....++.+... .. .-.-.+-++|+||+|+|||+||+.++...... .+.+.. .....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g-~~~~~- 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVE- 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEG-GGGTS-
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeh-hHHHH-
Confidence 344578999888777766542 11 00123458999999999999999999876422 233331 11100
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh----CCceEEEEEeCCCCh----------------HhHHHHHccC
Q 015918 116 GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL----TRKKVLIVFDDVNHP----------------RQIEFLIGNL 175 (398)
Q Consensus 116 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDd~~~~----------------~~~~~l~~~l 175 (398)
..... ....+...+ ...+.+++||+++.. ..+..++..+
T Consensus 103 ~~~g~---------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 103 MFVGV---------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp SCTTH---------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred hhhhh---------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 00000 011111111 234689999999521 1122333322
Q ss_pred CC--CCCCcEEEEEeCChhHHHh--c---CCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHcCCCh-H
Q 015918 176 DW--FASGSRILITARDKQALIN--C---GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP-I 247 (398)
Q Consensus 176 ~~--~~~~~~iliTsR~~~~~~~--~---~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-l 247 (398)
.. ......++.+|..+..... . .....+.++..+.++-.+++..++........ .....++..+.|+. .
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d---v~l~~lA~~t~G~~ga 238 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED---VDLALLAKRTPGFVGA 238 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS---STTHHHHTTSCSCCHH
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHhcCCCCHH
Confidence 21 1233445556655543221 1 13357788888888888888766532221111 11556778888876 4
Q ss_pred HHHHH
Q 015918 248 ALKIL 252 (398)
Q Consensus 248 ~i~~l 252 (398)
-|..+
T Consensus 239 dL~~l 243 (499)
T 2dhr_A 239 DLENL 243 (499)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 80
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=5.6e-06 Score=66.80 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....++|+|++|+|||||++.++..........+|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3468999999999999999999998755322255654
No 81
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.92 E-value=3.1e-05 Score=72.29 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=38.0
Q ss_pred cccccchhHHHHHHHhc------------cCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 49 KLVGVDSRIEEILSLLG------------VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~------------~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++|.+..++.+...+. .......+.++++||+|+|||++|+.+++.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 37899999888888772 11102456789999999999999999998873
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.86 E-value=7.8e-05 Score=76.77 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=40.3
Q ss_pred CcccccchhHHHHHHHhcc-----------CCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 48 NKLVGVDSRIEEILSLLGV-----------GLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~-----------~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
..++|.+..++.|.+++.. .. .....++|+|++|+||||||+.++..+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 5689999999999888742 11 44567999999999999999999887543
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.83 E-value=3.6e-05 Score=79.07 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=39.1
Q ss_pred cCcccccchhHHHHHHHhccCC----C--CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 47 ENKLVGVDSRIEEILSLLGVGL----T--MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~----~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...++|.+..++.+...+.... + .....++++||+|+|||++|+.+++.+.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3468999999988888764211 0 1234789999999999999999998873
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=0.00017 Score=75.07 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=40.2
Q ss_pred CcccccchhHHHHHHHhccC----CC--CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 48 NKLVGVDSRIEEILSLLGVG----LT--MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----~~--~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++|.+..++.+...+... .+ .....++|+||+|+|||++|+.+++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45899999999988877531 11 123578999999999999999999987543
No 85
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.66 E-value=0.00022 Score=64.79 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred Ccccc----cchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh-ccCcceEEEe
Q 015918 48 NKLVG----VDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 107 (398)
Q Consensus 48 ~~fvG----R~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~-~~f~~~~~~~ 107 (398)
..|++ +...++.+.+++........+.+.|+|++|+|||+||..+++.+. .....+.++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45664 334455566666543212257899999999999999999999876 5544455554
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.62 E-value=0.002 Score=59.40 Aligned_cols=157 Identities=8% Similarity=-0.067 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh-ccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 148 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 148 (398)
.-.++.+++|+.|.||++.+..+.+.+. ..|.....+. .....++.++...+... .
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-------------------p 72 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM-------------------S 72 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH-------------------H
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc-------------------C
Confidence 3457899999999999999999998754 3332211111 11124444444332111 1
Q ss_pred hhCCceEEEEEeCCCC-h--HhHHHHHccCCCCCCCcEEEEEeCC-------hhHHHh-cCCCeeEEcCCCChhhhHHHH
Q 015918 149 RLTRKKVLIVFDDVNH-P--RQIEFLIGNLDWFASGSRILITARD-------KQALIN-CGVNKIYQIKELVHVDALKLL 217 (398)
Q Consensus 149 ~l~~~~~LlvlDd~~~-~--~~~~~l~~~l~~~~~~~~iliTsR~-------~~~~~~-~~~~~~~~l~~L~~~e~~~Ll 217 (398)
+-+.+-++|+|+++. . .....+...+...++++.+|+++.. ..+... .+.+..++..+++.++....+
T Consensus 73 -lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 73 -LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp -HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred -CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 123455889999865 3 3455565555544556666666533 122222 356688999999999999988
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 015918 218 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 252 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl~i~~l 252 (398)
...+...+ .....+.+..+++.++|++..+...
T Consensus 152 ~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 152 AARAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 87763222 2234577899999999999877643
No 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.61 E-value=0.0016 Score=57.98 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=66.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh-hCC
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-LTR 152 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~ 152 (398)
-++|+||+|+|||||++.++....-. .+++.. .... .......... +..+.+. ...
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~-~~~~~~~~~~------------------i~~vf~~a~~~ 102 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELL-NMYVGESERA------------------VRQVFQRAKNS 102 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTC-SSTTHHHHHH------------------HHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHH-hhhhhHHHHH------------------HHHHHHHHHhc
Confidence 39999999999999999999875432 233331 0110 0011111100 1111111 134
Q ss_pred ceEEEEEeCCCChH-------------hHHHHHccCCC--CCCCcEEEEEeCChhHHHh-----cCCCeeEEcCCCChhh
Q 015918 153 KKVLIVFDDVNHPR-------------QIEFLIGNLDW--FASGSRILITARDKQALIN-----CGVNKIYQIKELVHVD 212 (398)
Q Consensus 153 ~~~LlvlDd~~~~~-------------~~~~l~~~l~~--~~~~~~iliTsR~~~~~~~-----~~~~~~~~l~~L~~~e 212 (398)
.+.++++|+++... ....+...+.. ......++.++..+..... ......+.++..+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 57899999996321 11222222211 1223445556655533221 1345678888889888
Q ss_pred hHHHHHHhh
Q 015918 213 ALKLLNQCA 221 (398)
Q Consensus 213 ~~~Ll~~~~ 221 (398)
-.+++....
T Consensus 183 r~~il~~~~ 191 (274)
T 2x8a_A 183 RLAILKTIT 191 (274)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888887765
No 88
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=0.00028 Score=60.41 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|-..+.+.- ....++.|.|++|+|||||+..++. . ....++|+.
T Consensus 8 ~LD~~l~Ggi-~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGF-APGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSB-CTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCC-cCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 3444443333 5567999999999999999999998 2 223466665
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.51 E-value=0.00019 Score=60.03 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhc--CCCCCCCCc----c----
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNMNKFPN----I---- 141 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~----~---- 141 (398)
...|.|++..|.||||+|..++-+...+--.+.++...... .......++..+.-.+.. .+..-...+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 35677788888999999999998866666566666533221 112222232222000000 011000100 0
Q ss_pred -chHHHHHhhCC-ceEEEEEeCCC-----ChHhHHHHHccCCCCCCCcEEEEEeCChh
Q 015918 142 -GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ 192 (398)
Q Consensus 142 -~~~~l~~~l~~-~~~LlvlDd~~-----~~~~~~~l~~~l~~~~~~~~iliTsR~~~ 192 (398)
........+.+ +-=|||||++. ..-..+.++..+........||+|+|..+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 22223334433 34499999982 22223333333333356778999999863
No 90
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.41 E-value=0.00028 Score=59.81 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=36.5
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.|++.++.|.+.+.........+++|.|++|+||||+++.+...+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35667777777776533245689999999999999999999987643
No 91
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00017 Score=66.16 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=40.4
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...++|++..++.+...+... ..++++|++|+|||+||+.+++.+...
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 356999999999998888652 368899999999999999999887544
No 92
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.36 E-value=9.5e-05 Score=63.60 Aligned_cols=38 Identities=16% Similarity=-0.215 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+..+++++|++|+||||++..++++...+...+.++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34578999999999999999999998776655555554
No 93
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.36 E-value=0.0002 Score=72.92 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHhccC----------CCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 49 KLVGVDSRIEEILSLLGVG----------LTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~----------~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+.|-++..+.|.+.+.-. .....+-++++||+|+|||.||+.++.....
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 4556666666666654311 1134567899999999999999999987543
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.35 E-value=0.00092 Score=61.66 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhccccc------cccCc-ccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 27 KLIEEIVSEVLERLDDTF------ETENK-LVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 27 ~~i~~~~~~~~~~l~~~~------~~~~~-fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+-++....++..+...-. ..... .-.-..-+..|-..|. +.- +...++.|.|++|+|||||+.+++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi-~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 9 SVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGY-PRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp HHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSE-ETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345566666666653321 11111 2233444566666676 433 56789999999999999999999988765
Q ss_pred cCcceEEEe
Q 015918 99 RFEGSYFAH 107 (398)
Q Consensus 99 ~f~~~~~~~ 107 (398)
.-..++|+.
T Consensus 88 ~gg~VlyId 96 (356)
T 3hr8_A 88 MGGVAAFID 96 (356)
T ss_dssp TTCCEEEEE
T ss_pred cCCeEEEEe
Confidence 545567776
No 95
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.23 E-value=0.00013 Score=60.88 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=24.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+.|+|+||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999988765554
No 96
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.21 E-value=5.8e-05 Score=63.10 Aligned_cols=34 Identities=18% Similarity=-0.144 Sum_probs=25.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+++++|++|+||||++..++++.......+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5788999999999999988887754433334444
No 97
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.19 E-value=0.0019 Score=59.88 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=53.1
Q ss_pred chHHHHHHHHHHHHhccccc------cccCcccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 25 ESKLIEEIVSEVLERLDDTF------ETENKLVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 25 ~~~~i~~~~~~~~~~l~~~~------~~~~~fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..+.++....++..+..... ......-+-..-+..|-..|. +.- +...++.|+|++|+||||||.+++....
T Consensus 21 ~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 21 RSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 34556666666666543321 111223334445666766675 333 5667899999999999999999998866
Q ss_pred ccCcceEEEe
Q 015918 98 RRFEGSYFAH 107 (398)
Q Consensus 98 ~~f~~~~~~~ 107 (398)
.....++|+.
T Consensus 100 ~~g~~vlyi~ 109 (366)
T 1xp8_A 100 KAGGTCAFID 109 (366)
T ss_dssp HTTCCEEEEE
T ss_pred HCCCeEEEEE
Confidence 5555677876
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.18 E-value=0.00086 Score=62.03 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE-EeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF-AHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
....++|.||.|+|||||++.++..+.......++ +.+......... ...................+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~---------~~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK---------KCLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS---------SSEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc---------ccceeeeeeccccCCHHHHHHHH
Confidence 34599999999999999999998876544222332 221100000000 00000000000011144577788
Q ss_pred hCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCCh
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 191 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 191 (398)
+...|=+|++|+..+.+....+.... ..+..+++|+-..
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTT 231 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCS
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccC
Confidence 88889999999998766655544332 2355677777544
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00025 Score=63.98 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++.|+|++|+|||+||.+++..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34567889999999999999999987
No 100
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.13 E-value=0.0018 Score=58.93 Aligned_cols=55 Identities=22% Similarity=0.108 Sum_probs=39.2
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|-..-+..|-..+ ++- ....+++|.|++|+|||||+.+++.....+...+.|++
T Consensus 49 ~~i~TG~~~LD~~l-gGl-~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 49 TGVPSGFTELDRMT-YGY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CSBCCSCHHHHHHH-SSB-CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCccCChHHHHhhc-CCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34444455555555 323 56679999999999999999999987655445677766
No 101
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.13 E-value=0.00074 Score=57.35 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+|+|.||||+||+|.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998775
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.11 E-value=0.00044 Score=58.08 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=32.8
Q ss_pred chhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 54 DSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 54 ~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
..-+..+..++.+ . ++.+.++|+||+|+||||+|..+++.+..
T Consensus 42 ~~f~~~l~~~~~~-i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 42 ITFLGALKSFLKG-T-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHT-C-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc-C-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445666666654 2 45567999999999999999999988754
No 103
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.10 E-value=0.00081 Score=60.46 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=28.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhcc--CcceEEEe
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRR--FEGSYFAH 107 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~--f~~~~~~~ 107 (398)
++.|.|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999999886654 34577776
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.0003 Score=58.16 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 105
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.002 Score=59.39 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~ 107 (398)
+..|-..|.+.- +...++.|+|++|+|||+||.+++..... .-..++|+.
T Consensus 108 ~~~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 108 SQEFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp CHHHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred ChhHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 445555554433 56789999999999999999999987432 234567776
No 106
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.07 E-value=0.0024 Score=54.50 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+.++|+|.||||+||||.|..+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 677899999999999999999998875
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.05 E-value=0.018 Score=53.48 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=38.2
Q ss_pred cCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 47 ENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 47 ~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...++|....+.++...+.... .....+.|+|++|+||+++|+.+.+.....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s~r~ 179 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYSGRK 179 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccccccchHHHHHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhcccc
Confidence 4578999988888877664322 333457899999999999999887654333
No 108
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.01 E-value=0.00064 Score=57.87 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.1
Q ss_pred hHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 56 RIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 56 el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+++|.+.+.... ....+++|.|++|+|||||++.++..+..
T Consensus 7 ~~~~~~~~~~~~~-~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 7 LCQGVLERLDPRQ-PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHSCTTC-CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445555544322 56689999999999999999999988653
No 109
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.00 E-value=0.0022 Score=58.72 Aligned_cols=72 Identities=13% Similarity=-0.011 Sum_probs=47.8
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
....|-..-+..|-..+.+- ....+++|.|++|+|||||+.+++......-..+.|++ ...+..++...++.
T Consensus 24 ~~~~gi~TG~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls 95 (338)
T 4a1f_A 24 LEVTGIPTGFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALS 95 (338)
T ss_dssp TCCCSBCCSCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHH
T ss_pred CCcCcccCCChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHH
Confidence 34555555566666666432 45679999999999999999999988665545566665 12344455544443
No 110
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.92 E-value=0.025 Score=52.86 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=37.3
Q ss_pred CcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 48 NKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..++|....++++.+.+.... .....+.|+|++|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-CAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhc-CCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 468999999999888776443 233446899999999999998877653
No 111
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.90 E-value=0.00093 Score=55.76 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..|+|.|++|+||||+++.+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987644
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.90 E-value=0.0011 Score=56.00 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
....+++|.|++|+||||+++.++..+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999988763
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.90 E-value=0.00057 Score=55.96 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+|+|.|++|+||||+++.+.+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988764
No 114
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.86 E-value=0.00098 Score=60.26 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....+++|+|++|+||||++..++..+......+.++.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 35679999999999999999999988765544444443
No 115
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.86 E-value=0.00091 Score=58.45 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=29.4
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+.++...+.... .....|+|.|++|+||||+++.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLS-KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHT-SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444433322 456789999999999999999998775
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.85 E-value=0.00053 Score=63.27 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=36.3
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.-..++|.+...+.+...+.. +....++|+|++|+|||+||+.+++.+.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~---~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVD---PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHC---GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhC---CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334699999876665544432 2234599999999999999999998764
No 117
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.83 E-value=0.0012 Score=55.06 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..|+|.|++|+||||+++.+.+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 579999999999999999999887643
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.83 E-value=0.0007 Score=55.87 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.+|+|.|++|+||||+++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.83 E-value=0.0015 Score=58.58 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+..+|+|.|++|+|||||++.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988654
No 120
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.82 E-value=0.00079 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....|+|.|++|+||||+++.+++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44689999999999999999999886
No 121
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.81 E-value=0.0014 Score=54.55 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.....++|.|++|+||||+++.++..+......+.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3557899999999999999999999876543333444
No 122
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.80 E-value=0.00085 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....|+|.|++|+||||+++.+.+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 123
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.80 E-value=0.00069 Score=57.66 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
....+++|.||+|+|||||++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35578999999999999999999987643
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.00078 Score=55.89 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++++|.||+|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988754
No 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.0015 Score=58.62 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|++|+||||+++.+...+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999987753
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.00085 Score=55.76 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+.|+|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 127
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.77 E-value=0.00075 Score=56.29 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=24.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
++++|.||+|+|||||++.++..+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765444
No 128
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.77 E-value=0.003 Score=58.31 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHhccccc------cccCcccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 26 SKLIEEIVSEVLERLDDTF------ETENKLVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 26 ~~~i~~~~~~~~~~l~~~~------~~~~~fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+-++....++..+...-. ......-+-..-+..|-..|. +.- +..+++.|.|++|+||||||.+++.....
T Consensus 11 ~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 11 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp HHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3456666666666543321 111223333444556666665 333 56689999999999999999999988665
Q ss_pred cCcceEEEe
Q 015918 99 RFEGSYFAH 107 (398)
Q Consensus 99 ~f~~~~~~~ 107 (398)
....++|+.
T Consensus 90 ~g~~vlyid 98 (356)
T 1u94_A 90 EGKTCAFID 98 (356)
T ss_dssp TTCCEEEEE
T ss_pred CCCeEEEEe
Confidence 555677776
No 129
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.76 E-value=0.0028 Score=58.42 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhccccc------cccCcccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 27 KLIEEIVSEVLERLDDTF------ETENKLVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 27 ~~i~~~~~~~~~~l~~~~------~~~~~fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+.++....++..+...-. ......-+-..-+..|-..|. +.- +...++.|.|++|+||||||.+++......
T Consensus 10 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~ 88 (349)
T 2zr9_A 10 KALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAA 88 (349)
T ss_dssp HHHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445566666655543221 111222333444556666665 333 567899999999999999999999876655
Q ss_pred CcceEEEe
Q 015918 100 FEGSYFAH 107 (398)
Q Consensus 100 f~~~~~~~ 107 (398)
-..+.|+.
T Consensus 89 g~~vlyi~ 96 (349)
T 2zr9_A 89 GGIAAFID 96 (349)
T ss_dssp TCCEEEEE
T ss_pred CCeEEEEE
Confidence 55677776
No 130
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.75 E-value=0.0082 Score=57.62 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCc-ceEEEe
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~-~~~~~~ 107 (398)
..+..+...+... .+.++|.|++|+||||++..++..+..... .+..+.
T Consensus 32 ~av~~~~~~i~~~----~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 32 NAFNIVMKAIKEK----KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp HHHHHHHHHHHSS----SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHhcC----CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 3344444445432 248999999999999999999988765544 344443
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0069 Score=57.89 Aligned_cols=70 Identities=20% Similarity=0.097 Sum_probs=43.8
Q ss_pred ccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEeechhhhhcCCHHHHHHHHHH
Q 015918 50 LVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLS 127 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 127 (398)
..|-..-+..|-..+ ++- ....+++|.|++|+|||||+.+++...... -..+.|++ . ..+..++...+..
T Consensus 180 ~~~i~tG~~~LD~~l-gGl-~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l--E~~~~~l~~R~~~ 250 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTL-GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L--EMPAAQLTLRMMC 250 (444)
T ss_dssp ---CCCSCHHHHHHH-CCC-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S--SSCHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C--CCCHHHHHHHHHH
Confidence 334444455565555 333 556799999999999999999999886542 33466665 1 2344555555443
No 132
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.73 E-value=0.0034 Score=60.26 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEEe
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~~ 107 (398)
.|-..-+..|-..+. +- ....+++|.|++|+|||||+.+++..... ....+.|++
T Consensus 184 ~~i~tG~~~LD~~~g-Gl-~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 184 TGIPTGFTELDRMTS-GF-QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CSBCCSCHHHHHHHS-SB-CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCcHHHHhhcC-CC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 333344445555552 22 45679999999999999999999988654 233466665
No 133
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.009 Score=58.93 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.++++|+|++|+||||++..+...+......+....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 368999999999999999999988766554455443
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.72 E-value=0.00092 Score=55.84 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|++|+|||||++.++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999865
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0016 Score=56.68 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....++.|.|++|+|||||+.+++......-..++|+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45578999999999999999999887655545567765
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.70 E-value=0.00091 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..++|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988753
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.00092 Score=54.74 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+|+|.|++|+||||+++.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.70 E-value=0.00098 Score=56.33 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+|+|.|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 139
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.0013 Score=56.59 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....+++|.|++|+|||||++.++......-..+.|+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34578999999999999999999977554434456654
No 140
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.67 E-value=0.00094 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+.++++|.||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997754
No 141
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.67 E-value=0.001 Score=56.36 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...++++|.|++|+||||+++.+...+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3557899999999999999999988764
No 142
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.67 E-value=0.0044 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-+.+|+|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47789999999999999886554
No 143
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.002 Score=54.64 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
...|+|.|++|+||||+++.+.+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 36899999999999999999999876543
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.66 E-value=0.0011 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+.|+|+|++|+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999998876
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.65 E-value=0.002 Score=58.58 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHhccC-CCCCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 50 LVGVDSRIEEILSLLGVG-LTMDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 50 fvGR~~el~~l~~~L~~~-~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++|....+..+...+... ....+.+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 566666777666655433 225667999999999999999999987765
No 146
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.64 E-value=0.0013 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998876
No 147
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.64 E-value=0.0034 Score=59.93 Aligned_cols=55 Identities=22% Similarity=0.090 Sum_probs=39.0
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|-..-+..|-..+. +- ....+++|.|++|+|||||+.+++.....+...+.|++
T Consensus 178 ~gi~TG~~~LD~~lg-Gl-~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSBCCSCHHHHHHHS-SB-CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcCCCcHHHHhhcC-CC-CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 344444555555553 22 45679999999999999999999988665544566665
No 148
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.62 E-value=0.0019 Score=54.89 Aligned_cols=30 Identities=10% Similarity=0.136 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+...|+|.|++|+||||+++.+.+.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999998876543
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0014 Score=54.84 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+..|+|.|++|+||||+++.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998775
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.61 E-value=0.0013 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.||+|+|||||++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 151
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.60 E-value=0.0015 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998775
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.59 E-value=0.0014 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+...|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 153
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.59 E-value=0.0067 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.147 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++.+++++|++|+||||++..++..+..+...+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999998776654444443
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.59 E-value=0.0067 Score=55.31 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+..+++|.|+.|+||||+++.++..+...-..+.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 3568999999999999999999998765544334443
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.59 E-value=0.0024 Score=52.13 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..+++.|.|++|+|||||+..++..+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999987655
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.57 E-value=0.0014 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++++|.|++|+||||||+.++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 157
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.56 E-value=0.0018 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|+|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998765
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.0016 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+...|+|+|++|+||||+++.+.+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999876
No 159
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.55 E-value=0.0077 Score=57.28 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.+.++|+|++|+|||||+..++.....++
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 34688999999999999999998765443
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.52 E-value=0.0016 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|++|+||||+++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44689999999999999999998775
No 161
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.51 E-value=0.0013 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|.|++|+||||+++.+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.51 E-value=0.0077 Score=54.74 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....+++|+|++|+||||++..++..+...-..+.++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45679999999999999999999988776544455443
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0026 Score=55.17 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEe
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 107 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~ 107 (398)
.|-..|.+.- +...++.|.|++|+|||||+..++..... ....++|+.
T Consensus 12 ~LD~~l~ggi-~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGI-ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSE-ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCC-cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3444453332 45679999999999999999999986322 134566765
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0018 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+.|+|.|++|+||||+++.+.+.+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 165
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.49 E-value=0.0022 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.....++|.|++|+||||+++.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567899999999999999999988764
No 166
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0014 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 167
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.49 E-value=0.0019 Score=54.45 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....|+|.|++|+||||+++.+++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 455789999999999999999998764
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.48 E-value=0.0013 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+.++|.||+|+|||||++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46789999999999999999987654
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.47 E-value=0.002 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....|+|+|++|+||||+++.+.+.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344589999999999999999998876
No 170
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.47 E-value=0.0043 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.|+|.|++|+||||+++.+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999887543
No 171
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.47 E-value=0.0032 Score=55.26 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 60 ILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 60 l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+..|+.... ++...++++||+|+|||.||..+++.
T Consensus 93 l~~~l~~~~-~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKF-GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCS-TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCC-CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 444554432 44567999999999999999999886
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.47 E-value=0.0011 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...|+|.|++|+||||+++.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987754
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.46 E-value=0.0017 Score=54.51 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...|+|.|++|+||||+++.+++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 174
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.003 Score=54.26 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|++|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999753
No 175
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.45 E-value=0.0029 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+...|+|.|++|+||||+++.+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998864
No 176
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.44 E-value=0.009 Score=54.41 Aligned_cols=39 Identities=31% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+..|-..|.+.- +...++.|+|++|+|||+||.+++...
T Consensus 84 ~~~LD~~l~GGl-~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGL-ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSE-ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554333 566899999999999999999999763
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0019 Score=54.81 Aligned_cols=29 Identities=10% Similarity=0.112 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
....|+|.|++|+||||+++.+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999886544
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.42 E-value=0.0022 Score=53.42 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+|+|.|++|+||||+++.+.+.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998875
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.42 E-value=0.0018 Score=53.08 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.41 E-value=0.0022 Score=54.45 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|+.|+|||||++.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988764
No 181
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.40 E-value=0.0092 Score=50.48 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=54.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
.+..+.+++|+-|+||||.+...+++.......+..+....+ ...... .+...++.........+ . ..+...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~----~i~s~~g~~~~a~~~~~-~-~~~~~~ 97 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEE----DVVSHNGLKVKAVPVSA-S-KDIFKH 97 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSS-G-GGGGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHH----HHHhhcCCeeEEeecCC-H-HHHHHH
Confidence 345788899999999999999999886655544555441111 111111 22222211111000000 1 112222
Q ss_pred hCCceEEEEEeCCC--ChHhHHHHHccCCCCCCCcEEEEEeCCh
Q 015918 150 LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK 191 (398)
Q Consensus 150 l~~~~~LlvlDd~~--~~~~~~~l~~~l~~~~~~~~iliTsR~~ 191 (398)
..++--+|+||++. +.+.++.+.. +. ..+..||++.++.
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~-l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQV-LA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHH-HH--HTTCEEEEEECSB
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHH-Hh--hCCCEEEEEeccc
Confidence 23333499999985 3344533332 21 2377899999853
No 182
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.40 E-value=0.0021 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998864
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.38 E-value=0.0081 Score=56.79 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.+++++|++|+||||++..++..+..+-..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999988776654454443
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.38 E-value=0.0022 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+...++|.|++|+|||||++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999775
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.38 E-value=0.0024 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.++|.|++|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 186
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.38 E-value=0.0016 Score=60.17 Aligned_cols=31 Identities=16% Similarity=-0.022 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.+.+.++|.|++|+|||||+..+++.+.++.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 4557899999999999999999998765543
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.36 E-value=0.0022 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 188
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.36 E-value=0.009 Score=55.60 Aligned_cols=108 Identities=11% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceE-EEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK 148 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 148 (398)
.....++|+|+.|+|||||++.++..+.......+ ++..... ..... .+ .+................+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~~---~~--~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----YVFKH---KK--SIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCCC---SS--SEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh----hhhcc---Cc--eEEEeeecCCCHHHHHHHHHH
Confidence 45578999999999999999999987654322233 3321000 00000 00 000000000011124556666
Q ss_pred hhCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeC
Q 015918 149 RLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 189 (398)
Q Consensus 149 ~l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR 189 (398)
.+...|-+|++|+..+.+......... ..+..++.|+-
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H 242 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLH 242 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCC
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEEC
Confidence 777778899999997666554443332 23444555553
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.35 E-value=0.0038 Score=56.34 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
+..+++|.|++|+|||||++.++..+...-..+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999886654333333
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.34 E-value=0.0026 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.34 E-value=0.0067 Score=55.34 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc------CcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~------f~~~~~~~ 107 (398)
+..|-..|.+.- +...++.|+|++|+|||+||.+++...... -..++|+.
T Consensus 93 ~~~LD~~L~GGl-~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 93 SQALDGLLAGGI-ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred chhHHHhcCCCC-CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344555554333 456799999999999999999999875332 34567776
No 192
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.33 E-value=0.0026 Score=60.29 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=37.6
Q ss_pred CcccccchhHHHHHHHhccC----------C-CCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 48 NKLVGVDSRIEEILSLLGVG----------L-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~----------~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++|.+...+.+...+... . ....+.++++||+|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45788888777776655211 0 0134569999999999999999999886443
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.33 E-value=0.0023 Score=54.84 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+...+++|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4557899999999999999999988754
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.32 E-value=0.0022 Score=55.09 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....|+|.|++|+||||+++.+++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999998764
No 195
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0017 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.3
Q ss_pred CceEEEEEcCCCccHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAF 92 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~ 92 (398)
...+++|.|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999963
No 196
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.30 E-value=0.011 Score=55.80 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+|+|+|++|+||||+++.+++.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456889999999999999999988654
No 197
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.30 E-value=0.0026 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 198
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.29 E-value=0.0027 Score=54.36 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+...|+|.|++|+||||+++.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999988763
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0027 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988743
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0028 Score=55.60 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+..+|+|.|++|+||||+++.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988754
No 201
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.27 E-value=0.0029 Score=51.52 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.|+|+|++|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.26 E-value=0.0022 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+...|+|.|++|+||||+++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998765
No 203
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.25 E-value=0.0046 Score=61.56 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=41.2
Q ss_pred ccCcccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 46 TENKLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 46 ~~~~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.-..++|.+..++.+...+... ..++|+|++|+||||||+.++..+....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3456899999999998888643 4889999999999999999998765443
No 204
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.25 E-value=0.0028 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
++..+|+|+|++|+||||+++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 205
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.25 E-value=0.0035 Score=54.59 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=27.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh-ccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~-~~f~~~~~~~ 107 (398)
....+++|.||+|+|||||++.++.... ..-....|+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4567999999999999999999985422 2233445544
No 206
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.24 E-value=0.009 Score=55.24 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=34.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+.+...+.... ++..+|+|+|.+|+|||||+..++..+......+..+
T Consensus 65 ~~~~~~~~~~~~-~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 65 AQQLLLRLLPDS-GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp HHHHHHHHGGGC-CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhHhhc-CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 444455444333 5678999999999999999999998875544434443
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.23 E-value=0.0028 Score=53.40 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...|+|.|++|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.23 E-value=0.0024 Score=54.70 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999998765
No 209
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.003 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|+|++|+||||+++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999998764
No 210
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0059 Score=50.19 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++++|.|++|+|||||+..+...+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 35789999999999999999999886543
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.17 E-value=0.003 Score=53.60 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.||+|+|||||++.++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4556899999999999999999987753
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.17 E-value=0.0039 Score=53.04 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|++|+||||+++.+...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998865
No 213
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.17 E-value=0.0022 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+|+|.|++|+||||+++.+.+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988754
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.17 E-value=0.0031 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.15 E-value=0.0054 Score=55.33 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
....+++|.|+.|+||||+++.++..+...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 345799999999999999999999886544
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0067 Score=49.97 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+...++|+|++|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999987643
No 217
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.13 E-value=0.0029 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 218
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.0073 Score=56.63 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc------cCcceEEEe
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH 107 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~------~f~~~~~~~ 107 (398)
+..|-..|.+.- ....++.|.|++|+|||||+.+++-.... ....++|+.
T Consensus 164 ~~~LD~lLgGGI-~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 164 SKNLDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChhHHHHhcCCc-CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 445555554433 56679999999999999999988754322 223467765
No 219
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.11 E-value=0.0042 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|+.|+|||||++.++..+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999998765
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.09 E-value=0.0038 Score=54.78 Aligned_cols=26 Identities=19% Similarity=0.251 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+|+|.|++|+||||+++.+++.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44689999999999999999999775
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.09 E-value=0.006 Score=53.79 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR 149 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 149 (398)
....+++|+||.|+|||||++.++..+...+...+++.... .. ...... ..+................+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~--~~~~~~-----~~~v~q~~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IE--YVFKHK-----KSIVNQREVGEDTKSFADALRAA 94 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CC--SCCCCS-----SSEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ce--eecCCc-----ceeeeHHHhCCCHHHHHHHHHHH
Confidence 45579999999999999999999987654323334332100 00 000000 00000000000001123445555
Q ss_pred hCCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCCh
Q 015918 150 LTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 191 (398)
Q Consensus 150 l~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~~ 191 (398)
+...|-+|++|+..+.+....+.... ..+..|++|+-..
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 133 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCS
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcc
Confidence 55567799999997655544433322 2355567666543
No 222
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.08 E-value=0.0054 Score=68.06 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 59 EILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 59 ~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|-..|. +.- .+.+.+.|+||+|+|||+||.+++.....+-..+.|+.
T Consensus 1414 ~LD~lLG~GGi-~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4555554 322 56789999999999999999999988776666777876
No 223
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.08 E-value=0.0044 Score=50.10 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|+.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999876
No 224
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0071 Score=51.58 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.+.+.++|.|.+|+|||||+..++......
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 356789999999999999999999886544
No 225
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.06 E-value=0.0035 Score=54.53 Aligned_cols=38 Identities=26% Similarity=0.264 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH-hhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK-ISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~-~~~~f~~~~~~~ 107 (398)
+...++.|.|++|+|||+||.+++.. ..+....+.|++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 45679999999999999999998866 333334455654
No 226
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.06 E-value=0.0094 Score=51.41 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
....|+|.|++|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5578999999999999999999998765
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.05 E-value=0.0062 Score=54.73 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCc-ceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~-~~~~~~ 107 (398)
....+++|.|++|+|||||++.++..+..... .+.|+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45579999999999999999999988654422 455654
No 228
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.05 E-value=0.008 Score=51.45 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
.....++|.|.+|+|||||+..++......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 356788899999999999999999875444
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.05 E-value=0.029 Score=53.13 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
++++|.++|++|+||||++..++..+..+ ...+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 46789999999999999999999998766 44444443
No 230
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.05 E-value=0.0046 Score=56.02 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|++|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 5668999999999999999999988765
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.04 E-value=0.0038 Score=56.12 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.++++|.||+|+|||||+..+++.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 232
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.03 E-value=0.0038 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.+++|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 233
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.03 E-value=0.012 Score=53.22 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557999999999999999999988765
No 234
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.03 E-value=0.0057 Score=56.01 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=30.8
Q ss_pred chhHHHHHHHhccCC-CCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 54 DSRIEEILSLLGVGL-TMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 54 ~~el~~l~~~L~~~~-~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+...+.+.+.+.... .+....++|.|++|+||||+++.++..+.-.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 334444545443211 1345668999999999999999999876544
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.99 E-value=0.0045 Score=53.41 Aligned_cols=26 Identities=15% Similarity=0.357 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|++|+||||+++.+++.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998876
No 236
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.99 E-value=0.014 Score=49.72 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+...|+|.|+.|+||||+++.+.+.+....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999887653
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.99 E-value=0.012 Score=56.38 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF 105 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~ 105 (398)
....+++|.|+.|+|||||++.++..+......+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 456799999999999999999999887654333333
No 238
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.97 E-value=0.0074 Score=53.74 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
....++.|.|++|+|||||+.+++..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45579999999999999999999986554
No 239
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.97 E-value=0.0052 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...++++|.||+|+|||||+..+++.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 345789999999999999999998774
No 240
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.95 E-value=0.0081 Score=54.00 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~~ 107 (398)
.+..+++|+|++|+||||++..++..+.. ....+.++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34679999999999999999999988763 333444444
No 241
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0074 Score=55.66 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...+++|.|+.|+||||+++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 56799999999999999999999886644
No 242
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.94 E-value=0.14 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.++|.|+.|+||||++..++-.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 57899999999999877766543
No 243
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.93 E-value=0.0053 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 244
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.93 E-value=0.022 Score=65.30 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=69.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCC
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 152 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 152 (398)
+.++++||+|+|||++|+.+..... .+. ...+. .+...+...+...+-..+..... ....... ..-.+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~-~~~-~~~in----fsa~ts~~~~~~~i~~~~~~~~~--~~g~~~~----P~~~g 1335 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS-LYD-VVGIN----FSKDTTTEHILSALHRHTNYVTT--SKGLTLL----PKSDI 1335 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS-SCE-EEEEE----CCTTCCHHHHHHHHHHHBCCEEE--TTTEEEE----EBSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC-CCc-eEEEE----eecCCCHHHHHHHHHHHhhhccc--cCCcccc----CCCCC
Confidence 6788999999999999988876542 222 22333 22233333333333222211000 0000000 00145
Q ss_pred ceEEEEEeCCCCh-----------HhHHHHHcc--CCCCC-------CCcEEEEEeCChh-------HHHhcCCCeeEEc
Q 015918 153 KKVLIVFDDVNHP-----------RQIEFLIGN--LDWFA-------SGSRILITARDKQ-------ALINCGVNKIYQI 205 (398)
Q Consensus 153 ~~~LlvlDd~~~~-----------~~~~~l~~~--l~~~~-------~~~~iliTsR~~~-------~~~~~~~~~~~~l 205 (398)
++++++|||++-+ +.++.++.. +.... .+..+|.++..+. .....+....+.+
T Consensus 1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Confidence 7889999997421 112323221 00001 1234444443321 1122346678999
Q ss_pred CCCChhhhHHHHHHhh
Q 015918 206 KELVHVDALKLLNQCA 221 (398)
Q Consensus 206 ~~L~~~e~~~Ll~~~~ 221 (398)
+..+.++-..+|...+
T Consensus 1416 ~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998887665
No 245
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.93 E-value=0.0049 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 246
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.93 E-value=0.14 Score=44.10 Aligned_cols=48 Identities=21% Similarity=0.039 Sum_probs=31.6
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
-=|....+.+..++.. +-++|+|+.|+|||.++..++.... ..+++++
T Consensus 93 ~l~~~Q~~ai~~~~~~------~~~ll~~~tG~GKT~~a~~~~~~~~---~~~liv~ 140 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD------KRGCIVLPTGSGKTHVAMAAINELS---TPTLIVV 140 (237)
T ss_dssp CCCHHHHHHHHHHTTT------SEEEEEESSSTTHHHHHHHHHHHSC---SCEEEEE
T ss_pred CcCHHHHHHHHHHHhC------CCEEEEeCCCCCHHHHHHHHHHHcC---CCEEEEe
Confidence 3345555555555532 2388999999999999998887652 2355554
No 247
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.93 E-value=0.005 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+|+|+|+.|+||||+++.+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998764
No 248
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.92 E-value=0.03 Score=55.64 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+.++|+|++|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999887765
No 249
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.92 E-value=0.0056 Score=52.95 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
....|+|.|++|+||||+++.+++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998863
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.91 E-value=0.0033 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.++|+|.||.|+|||||+..+++.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44689999999999999999998765
No 251
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.88 E-value=0.0037 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+.++|.|++|+||||||..++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998763
No 252
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.87 E-value=0.005 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|+|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.87 E-value=0.0032 Score=54.37 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=16.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHH-HHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFF-SKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~-~~~ 96 (398)
...+++|.||.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44689999999999999999998 654
No 254
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.86 E-value=0.006 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.++++|+||+|+|||||+..+++.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.84 E-value=0.0054 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+|+|.|++|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 256
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.84 E-value=0.0089 Score=51.04 Aligned_cols=35 Identities=20% Similarity=-0.063 Sum_probs=27.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
-.|++.|+||+||||++..++..+..+...+.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34889999999999999999988766644454444
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.81 E-value=0.0054 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..|+|.|++|+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999876
No 258
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.81 E-value=0.006 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+|+|.|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988763
No 259
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.004 Score=55.87 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+..+|+|.|++|+||||+++.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988764
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.78 E-value=0.0057 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+++|.|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 688999999999999999998765
No 261
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.76 E-value=0.0054 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998763
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.75 E-value=0.012 Score=54.12 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.|-..|...- +...++.|+|++|+|||||+.+++...
T Consensus 119 ~LD~lL~ggi-~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGI-ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSE-ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444333 567899999999999999999999875
No 263
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0058 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
+...+|+|+|++|+||||+++.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999983
No 264
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.73 E-value=0.0044 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+++.|+|++|+|||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999886543
No 265
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.73 E-value=0.015 Score=50.32 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
+...|+|.|++|+||||+++.+.+.+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999876543
No 266
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.70 E-value=0.0066 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+|+|.|++|+||||+++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 267
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.70 E-value=0.0055 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++.-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 34568999999999999999988754
No 268
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.69 E-value=0.012 Score=53.33 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++.++|.|+|-|||||||.+..++..+......+.-+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57799999999999999999999999877665566554
No 269
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.67 E-value=0.015 Score=52.25 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..++++.|++|+||||++..++..+......+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999999999999988766544455554
No 270
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0086 Score=49.71 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|++|+|||||+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999865
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.64 E-value=0.0069 Score=52.66 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.. .+++|.|+.|+|||||++.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999998864
No 272
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.63 E-value=0.032 Score=52.94 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~ 106 (398)
.+.+.++|.|++|+|||+|+.++++..... .+..+|.
T Consensus 151 gkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 151 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred ccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 355778999999999999999999886433 2334443
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.63 E-value=0.011 Score=54.90 Aligned_cols=27 Identities=22% Similarity=0.088 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999764
No 274
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.60 E-value=0.019 Score=48.79 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
...|++.|+.|+||||+++.+.+.+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999876553
No 275
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.59 E-value=0.0075 Score=54.26 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
++...++|+|++|+|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456789999999999999999999765
No 276
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.56 E-value=0.022 Score=47.73 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.|+|-|+.|+||||.++.+.+.+..+...+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4788999999999999999999877765555544
No 277
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.55 E-value=0.016 Score=50.87 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+..++++.|.+|+||||++..++..+. ....+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 3567888999999999999999998877 43334333
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.53 E-value=0.0069 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|+.|+|||||++.++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999988653
No 279
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.53 E-value=0.015 Score=49.89 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+...|+|.|++|+||||+++.+.+.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45689999999999999999999987654
No 280
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.52 E-value=0.02 Score=49.06 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+...|+|.|+.|+||||+++.+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999998765
No 281
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.51 E-value=0.0098 Score=56.41 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+++|+|+|++|+||||++..++..+..+...+.++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999988765544445543
No 282
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.50 E-value=0.015 Score=52.43 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.++|+|+|-||+||||++..++..+......+..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46688888899999999999999999877655555554
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.49 E-value=0.015 Score=52.18 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...+++|+|++|+||||++..++..+...-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4578999999999999999999988765544444443
No 284
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.46 E-value=0.016 Score=49.02 Aligned_cols=29 Identities=17% Similarity=0.457 Sum_probs=25.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFE 101 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~ 101 (398)
+.|+|-|+.|+||||+++.+.+.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999876544
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.46 E-value=0.0058 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998754
No 286
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.43 E-value=0.036 Score=55.60 Aligned_cols=45 Identities=22% Similarity=0.117 Sum_probs=30.6
Q ss_pred hhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceE
Q 015918 55 SRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY 104 (398)
Q Consensus 55 ~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~ 104 (398)
...+++...|.. ..+.+|+||||+|||+.+.++...+..+...+.
T Consensus 193 ~Q~~AV~~al~~-----~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~IL 237 (646)
T 4b3f_X 193 SQKEAVLFALSQ-----KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVL 237 (646)
T ss_dssp HHHHHHHHHHHC-----SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhcC-----CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 345566666643 247899999999999887777766544443333
No 287
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.0095 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
++|+|.||+|+|||||+..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998764
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0094 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
+..|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.42 E-value=0.0078 Score=53.08 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999998764
No 290
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.41 E-value=0.028 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+..+++|.|++|+|||||+..++..+......+.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~ 89 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVL 89 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEE
Confidence 5668999999999999999999997754433333333
No 291
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.40 E-value=0.0094 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+.++|.|++|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357889999999999999999985
No 292
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.39 E-value=0.021 Score=52.50 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh--ccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~--~~f~~~~~~~ 107 (398)
...+++++.|-||+||||++..++..+. .....+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4568999999999999999999999887 6655555555
No 293
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.38 E-value=0.021 Score=52.19 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...+++++.|-||+||||++..++..+.+....+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45688999999999999999999999887766666665
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.37 E-value=0.0088 Score=52.10 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999998864
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.31 E-value=0.011 Score=52.38 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999999874
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.31 E-value=0.0068 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+++|.|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999865
No 297
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.30 E-value=0.009 Score=52.66 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 45568999999999999999998864
No 298
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.29 E-value=0.013 Score=50.66 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.....|+|.|++|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998765
No 299
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.26 E-value=0.044 Score=53.14 Aligned_cols=38 Identities=5% Similarity=-0.185 Sum_probs=31.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhcc-CcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~-f~~~~~~~ 107 (398)
....+++|.|++|+|||||+.+++.....+ -..+.|++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 456789999999999999999999887654 44567765
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.25 E-value=0.0096 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
....+++|.|+.|+|||||++.++.-+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 445689999999999999999988653
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.24 E-value=0.011 Score=51.70 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999873
No 302
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.24 E-value=0.0089 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.||.|+|||||++.++.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999998764
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.24 E-value=0.0097 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999998864
No 304
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.24 E-value=0.0081 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458899999999999999998764
No 305
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.23 E-value=0.018 Score=55.63 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 49 KLVGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
....|.+-.+.+.+...... ....+|++.|++|+||||+++.+++++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~-~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRP-KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGG-GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhccccc-ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34455555556666553222 34578999999999999999999999864
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.23 E-value=0.0097 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998864
No 307
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.22 E-value=0.0084 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998864
No 308
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.21 E-value=0.0084 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999998764
No 309
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.20 E-value=0.036 Score=52.24 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
....+++|+|+.|+|||||++.++..+...-..+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 3456899999999999999999998865443334443
No 310
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.19 E-value=0.0086 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999988653
No 311
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.18 E-value=0.0086 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998764
No 312
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.16 E-value=0.017 Score=56.44 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+..+++|.|++|+|||||++.++..+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 45789999999999999999999987643
No 313
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.15 E-value=0.012 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.-.++|.|++|+|||||++.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999875
No 314
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.14 E-value=0.01 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999998864
No 315
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.13 E-value=0.035 Score=50.94 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
.+..+++|.|++|+|||||+..++..+......+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~ 90 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI 90 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5668899999999999999999998765443333333
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.12 E-value=0.012 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.-.++|.|++|+|||||+..++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 317
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.12 E-value=0.022 Score=55.41 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
....+|+++|.+|+||||+++.+++.+.-.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3557899999999999999999998875444
No 318
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.12 E-value=0.014 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..++|.|++|+|||||...++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999753
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.11 E-value=0.011 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999998764
No 320
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.06 E-value=0.025 Score=52.05 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
...+++|.|++|+|||||...++......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 46789999999999999999999875444
No 321
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.04 E-value=0.023 Score=54.82 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.++|+|+|.+|+||||++..++..+...-..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4678999999999999999999988766533344443
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.02 E-value=0.016 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.++|.|++|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999865
No 323
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.01 E-value=0.012 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|+.|+|||||++.++.-+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999987654
No 324
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.00 E-value=0.035 Score=54.34 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 51 VGVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 51 vGR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
+.|.+..+.+.+...... ....+|+++|++|+||||+++.+.+.+...
T Consensus 352 ~~r~eV~~~lr~~~~~~~-~~~~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKH-KQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp TSCHHHHHHHHHHSCCGG-GCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHhhcccc-ccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 334444444444442211 345789999999999999999999886543
No 325
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.99 E-value=0.027 Score=53.06 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
...++.|.|++|+||||++..++..+......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467899999999999999999999877654444444
No 326
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.99 E-value=0.025 Score=53.92 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=28.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc-cCcceEEE
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFA 106 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~f~~~~~~ 106 (398)
.+.+.++|.|++|+|||+|+.++++.... +.+..+|.
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 45567899999999999999999998643 33444554
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.97 E-value=0.011 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~ 94 (398)
-++|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.97 E-value=0.014 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||+|+|||||++.++--
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34568999999999999999999864
No 329
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.0066 Score=60.19 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=36.5
Q ss_pred cccCcccccchhHHHHHHHhccCCC--------CCceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 45 ETENKLVGVDSRIEEILSLLGVGLT--------MDTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 45 ~~~~~fvGR~~el~~l~~~L~~~~~--------~~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.-.+.++|.+...+.+...+.+... .+...++++|++|+|||+||+.+++..
T Consensus 292 ~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 292 SIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp HTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 3456799999877776555543210 001168899999999999999987654
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.94 E-value=0.011 Score=51.85 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998865
No 331
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.93 E-value=0.039 Score=50.80 Aligned_cols=38 Identities=24% Similarity=0.157 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+...++++.|.||+||||++..++..+...-..+..+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678888999999999999999999877755555555
No 332
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.93 E-value=0.027 Score=51.25 Aligned_cols=36 Identities=33% Similarity=0.287 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..+++..|.||+||||+|..++..+.+....+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 578888999999999999999999877765566665
No 333
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.91 E-value=0.013 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.|+.|+|||||++.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999998864
No 334
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.83 E-value=0.024 Score=51.02 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=25.2
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFF 93 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~ 93 (398)
+++|.+.+. ..+++|.|++|+|||||++.+.
T Consensus 156 i~~L~~~l~------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc------CcEEEEECCCCCCHHHHHHHHH
Confidence 556666653 2578999999999999999998
No 335
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.82 E-value=0.042 Score=54.85 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=26.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.++|+||+|+|||+++..+...+.......+.++
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 47889999999999999998887654333344443
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.79 E-value=0.018 Score=53.13 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 34568999999999999999999864
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.79 E-value=0.012 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45578999999999999999998765
No 338
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.018 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 34568999999999999999998864
No 339
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.77 E-value=0.014 Score=60.03 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=38.7
Q ss_pred CcccccchhHHHHHHHhccCC----------CCCceEEEEEcCCCccHHHHHHHHHHHhhcc
Q 015918 48 NKLVGVDSRIEEILSLLGVGL----------TMDTCKLGIWGIGGVGKTAIAGAFFSKISRR 99 (398)
Q Consensus 48 ~~fvGR~~el~~l~~~L~~~~----------~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 99 (398)
..++|-+...+.|.+.+.-.. -...+.++++||+|+|||+||+.++......
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456788888888877664210 0244668899999999999999999987544
No 340
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.77 E-value=0.014 Score=47.99 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 015918 75 LGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.|+|.+|+||||+|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 341
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.76 E-value=0.013 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....++|+|+.|+|||||++.++.-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45578999999999999999988764
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.76 E-value=0.018 Score=53.42 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||+|+|||||++.++--
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 34568999999999999999999864
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.76 E-value=0.02 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+...++|.|++|+|||||+..++..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467899999999999999999863
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.75 E-value=0.017 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+.+|+|+.|+|||||+..++.-+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999877643
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.74 E-value=0.018 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.-.|+|.|++|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999999865
No 346
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.73 E-value=0.016 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++--
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 34568999999999999999998864
No 347
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.++|.|+.|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999763
No 348
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.70 E-value=0.0089 Score=52.69 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+...|+|.|+.|+||||+++.+.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4557899999999999999999877653
No 349
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.70 E-value=0.032 Score=49.07 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++|.|.|-||+||||++..++..+......+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46777899999999999999999876654555554
No 350
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.69 E-value=0.018 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.+++|+|++|+||||+++.+.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998764
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.67 E-value=0.02 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++--
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34568999999999999999998864
No 352
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.67 E-value=0.042 Score=60.37 Aligned_cols=95 Identities=20% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCC-----
Q 015918 59 EILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDG----- 133 (398)
Q Consensus 59 ~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----- 133 (398)
.|-..|....-++.++|-|+||.|+||||||.++....+..-...+|+. .....++.. ++.++-..
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~~~~~~~-----~~~~Gv~~~~l~~ 1488 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNLLC 1488 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-----HHHTTCCGGGCEE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCCCCCHHH-----HHHcCCCHHHeEE
Confidence 4444554322267789999999999999999999988777777788887 333333322 22322111
Q ss_pred CCCCCCccchHHHHHhhC-CceEEEEEeCC
Q 015918 134 NMNKFPNIGLNFQSKRLT-RKKVLIVFDDV 162 (398)
Q Consensus 134 ~~~~~~~~~~~~l~~~l~-~~~~LlvlDd~ 162 (398)
..++..+.........++ +..-+||+|.+
T Consensus 1489 ~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1489 SQPDTGEQALEICDALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred eCCCcHHHHHHHHHHHHHcCCCCEEEEccH
Confidence 011222223333444443 45669999998
No 353
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.67 E-value=0.016 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45568999999999999999998865
No 354
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.66 E-value=0.016 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
+.++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998763
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.66 E-value=0.017 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.||.|+|||||++.++--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4468999999999999999998854
No 356
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.66 E-value=0.02 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.|+.|+|||||++.++.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 45568999999999999999988764
No 357
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.66 E-value=0.018 Score=45.98 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 358
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.64 E-value=0.034 Score=48.17 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=26.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 75 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
|.|.|-||+||||++..++..+......+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999999877755555554
No 359
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.63 E-value=0.015 Score=54.62 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....++|.|++|+|||||.+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999873
No 360
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.62 E-value=0.016 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.334 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+++|.|+.|+|||||++.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999988653
No 361
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.59 E-value=0.024 Score=46.12 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+...|+|.|++|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667899999999999999999764
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.58 E-value=0.024 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|++|+|||||+..++..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567889999999999999999875
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.56 E-value=0.021 Score=45.65 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998865
No 364
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.56 E-value=0.02 Score=46.41 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998754
No 365
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.53 E-value=0.026 Score=48.08 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+...|++.|+.|+||||++..+.+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3468999999999999999999998866
No 366
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.51 E-value=0.038 Score=53.11 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccC
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF 100 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f 100 (398)
.....|+++|.+|+||||+++.+++.+...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 3456889999999999999999998865444
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.50 E-value=0.019 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...+++|.||.|+|||||++.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 4468999999999999999998864
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.49 E-value=0.024 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 015918 75 LGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 75 i~I~G~~G~GKTtLa~~~~~~ 95 (398)
|+|.|.+|+|||||+..++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999865
No 369
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.49 E-value=0.023 Score=47.70 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=20.9
Q ss_pred ccchhHHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 52 GVDSRIEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 52 GR~~el~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
++..-.+.+.+.... .+.-.|+|.|.+|+|||||+..++..
T Consensus 13 ~~~~~~~~m~~~~~~---~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQ---GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccchhHHHhHhhc---CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344444444444333 33456789999999999999998864
No 370
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.49 E-value=0.04 Score=54.21 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
...+|+|+|++|+||||+++.+.+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4568999999999999999999998764
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.49 E-value=0.042 Score=53.59 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....+++|.|++|+|||||++.++......-..++|+.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45678999999999999999999987654433345554
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.49 E-value=0.023 Score=45.53 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999865
No 373
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.47 E-value=0.025 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHh
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
-.++|.|++|+||||+|+.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998875
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.46 E-value=0.023 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..-.|+|.|++|+|||||+..+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3446889999999999999999865
No 375
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.45 E-value=0.016 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||.|+|||||++.++--
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999998854
No 376
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.44 E-value=0.055 Score=45.05 Aligned_cols=36 Identities=11% Similarity=-0.201 Sum_probs=28.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
+.++.+++|+.|+||||.+...+++...+...+..+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999998865544444444
No 377
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.024 Score=45.55 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-|+|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 378
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.40 E-value=0.024 Score=45.39 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-|+|.|.+|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.40 E-value=0.024 Score=45.57 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 380
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.39 E-value=0.054 Score=49.39 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+...++++.|-||+||||++..++..+.+....+..+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44578888999999999999999999887765566555
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.38 E-value=0.024 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...++|.|++|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56889999999999999999987743
No 382
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.37 E-value=0.025 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 383
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.35 E-value=0.024 Score=45.66 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~ 94 (398)
-|+|.|++|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 384
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.35 E-value=0.026 Score=47.45 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..+|+|.|+.|+||||+++.+++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999864
No 385
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.32 E-value=0.025 Score=46.63 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.|+|.|.+|+|||||+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 386
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.31 E-value=0.026 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446889999999999999988865
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.31 E-value=0.024 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999999854
No 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.30 E-value=0.025 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....+++|.||+|+|||||++.++.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45568999999999999999998864
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.30 E-value=0.032 Score=45.45 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|++|+|||||+..++..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999999865
No 390
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.28 E-value=0.04 Score=49.15 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=27.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++|.|.|-||+||||++..++..+......+..+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57778999999999999999999876644455444
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.27 E-value=0.024 Score=46.56 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999875
No 392
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.26 E-value=0.071 Score=49.12 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh--ccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~--~~f~~~~~~~ 107 (398)
....+++..|-||+||||++..++..+. .....+..+.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3456788899999999999999999988 6655566655
No 393
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.025 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.25 E-value=0.024 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..++|.|++|+|||||...++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 395
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.25 E-value=0.051 Score=45.47 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=27.0
Q ss_pred eEEEEE-cCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~-G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
++|.|+ +-||+||||++..++..+......+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 456665 77889999999999999877655566555
No 396
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.25 E-value=0.028 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|.+|+|||||+..++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 397
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.22 E-value=0.035 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+...|+|.|++|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999764
No 398
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.19 E-value=0.052 Score=53.77 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=31.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...+++++.|.+|+||||++..++..+.+....+..+.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 35678999999999999999999998776655556654
No 399
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.17 E-value=0.043 Score=50.44 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
++.|...+. ..+++|.|++|+|||||+..++..
T Consensus 206 l~~L~~~~~------G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 206 LKPLEEALT------GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HHHHHHHHT------TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHhcC------CCEEEEECCCCccHHHHHHHHhcc
Confidence 455555442 247899999999999999988754
No 400
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.15 E-value=0.041 Score=45.16 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....|+|.|++|+|||||+..++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998754
No 401
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.15 E-value=0.034 Score=45.22 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999999875
No 402
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.15 E-value=0.047 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+..+|+|+|++|+||||+++.+.+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999998743
No 403
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.15 E-value=0.024 Score=45.48 Aligned_cols=21 Identities=43% Similarity=0.575 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~ 94 (398)
-|+|.|++|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998863
No 404
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.14 E-value=0.029 Score=46.44 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+...|+|.|++|+|||||+..++..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999754
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.14 E-value=0.029 Score=46.33 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3446889999999999999999865
No 406
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.12 E-value=0.03 Score=45.45 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..-.|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 407
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.12 E-value=0.043 Score=49.37 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=25.4
Q ss_pred HHHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 57 IEEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 57 l~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
++++.+++.+ .+++|.|++|+|||||++.++..
T Consensus 160 v~~lf~~l~g------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC------CeEEEECCCCCcHHHHHHHhccc
Confidence 5555555532 47899999999999999998644
No 408
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.12 E-value=0.026 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999854
No 409
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.09 E-value=0.03 Score=46.11 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.07 E-value=0.032 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||...++..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998853
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.07 E-value=0.028 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...|+|.|++|+|||||+..++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 412
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.05 E-value=0.024 Score=52.47 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
....++|+|+.|+|||||++.++..+.. ....+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 3458999999999999999999876543 23444443
No 413
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.04 E-value=0.024 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..++..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 414
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.04 E-value=0.14 Score=48.97 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCccHHHHHH-HHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAG-AFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~-~~~~~~ 96 (398)
.+.+.++|.|++|+|||+|+. .+++..
T Consensus 160 grGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 160 GRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp BTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred ccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 455678899999999999965 555543
No 415
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.02 E-value=0.032 Score=46.19 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.02 E-value=0.096 Score=58.41 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=43.7
Q ss_pred cccccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 49 KLVGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 49 ~fvGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
...+-..-...|-..|. +.- ....++.|+|++|+||||||.+++......-..++|++
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl-~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCceeeCCCHHHHHHhccCCc-cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34455555666766675 333 56789999999999999999999998776655677876
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.02 E-value=0.03 Score=45.47 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.|+|.|++|+|||||+..++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999999864
No 418
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.01 E-value=0.28 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=19.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..++|.|+.|+||||++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999977777544
No 419
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.99 E-value=0.05 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.134 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCccHHHHHH-HHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAG-AFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~-~~~~~~ 96 (398)
.+.+.++|.|++|+|||+|+. .+++..
T Consensus 173 grGQR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 173 GRGQRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp ETTCBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred ccCCEEEEEcCCCCCccHHHHHHHHHhh
Confidence 355678899999999999965 555543
No 420
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.99 E-value=0.033 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....|+|.|++|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457889999999999999999865
No 421
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.98 E-value=0.033 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 422
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.95 E-value=0.033 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|++|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999865
No 423
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.95 E-value=0.088 Score=44.96 Aligned_cols=108 Identities=10% Similarity=-0.048 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
...+.+++|+-|.||||.+...+++.......+..+.... +.... ..+... ++.......... ..+ +....
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~--D~Ryg-~~i~sr----~G~~~~a~~i~~-~~d-i~~~~ 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK--DTRYS-SSFCTH----DRNTMEALPACL-LRD-VAQEA 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT--CCCC----------------CEEEEESS-GGG-GHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC--Cccch-HHHHhh----cCCeeEEEecCC-HHH-HHHHh
Confidence 3578899999999999888888877655544444444221 11222 222222 211110000000 111 11122
Q ss_pred CCceEEEEEeCCCChHhHHHHHccCCCCCCCcEEEEEeCC
Q 015918 151 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARD 190 (398)
Q Consensus 151 ~~~~~LlvlDd~~~~~~~~~l~~~l~~~~~~~~iliTsR~ 190 (398)
+.--+|+||++.-...+..+...+. ..+..||+|.++
T Consensus 89 -~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALD 125 (234)
T ss_dssp -TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCS
T ss_pred -ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEecc
Confidence 2233999999842222444443333 257789999987
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.95 E-value=0.041 Score=43.81 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
..+.+|+|+.|+||||+...++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999987654
No 425
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.95 E-value=0.034 Score=45.50 Aligned_cols=25 Identities=52% Similarity=0.732 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..-.|+|.|.+|+|||||+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999999865
No 426
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.94 E-value=0.034 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..++..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999865
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.93 E-value=0.031 Score=45.80 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..++..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999865
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.92 E-value=0.028 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-|+|.|++|+|||||+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998854
No 429
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.90 E-value=0.059 Score=44.30 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+.-.|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999843
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.035 Score=45.16 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999865
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.88 E-value=0.034 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.-.|+|.|++|+|||||+..++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445889999999999999999875
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.88 E-value=0.035 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998754
No 433
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.88 E-value=0.035 Score=45.38 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...|+|.|++|+|||||+..++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999999865
No 434
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.87 E-value=0.12 Score=49.18 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCceEEEEEcCCCccHHHHHH-HHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAG-AFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~-~~~~~ 95 (398)
.+.+.++|.|.+|+|||+|+. .+.+.
T Consensus 160 grGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 160 GRGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp BTTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred ccCCEEEeecCCCCCcchHHHHHHHhh
Confidence 355678899999999999964 44443
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.87 E-value=0.054 Score=59.50 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=41.8
Q ss_pred cccchhHHHHHHHhc-cCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 51 VGVDSRIEEILSLLG-VGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 51 vGR~~el~~l~~~L~-~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+-..-+..|-..|. +.- +..+++.|+|++|+||||||.+++......-..++|++
T Consensus 362 ~~isTGi~~LD~lLg~GGl-~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis 418 (1706)
T 3cmw_A 362 ETISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (1706)
T ss_dssp CEECCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceeccCcHHHHHHhccCCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 334444556666665 333 56789999999999999999999988766666778876
No 436
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.83 E-value=0.021 Score=48.09 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.....++|.|++|+|||||+..++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4456799999999999999998764
No 437
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.83 E-value=0.047 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCccHHHHHH-HHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAG-AFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~-~~~~~~~ 97 (398)
.+.+.++|.|++|+|||+||. .+++...
T Consensus 160 grGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 160 GRGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 455678899999999999954 5555544
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.83 E-value=0.041 Score=46.21 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...-|+|.|++|+|||||+..++..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999864
No 439
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.035 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|.+|+|||||+..+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 35889999999999999999875
No 440
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.82 E-value=0.12 Score=45.53 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=37.2
Q ss_pred hhHHHHHHHhccC-CCCCceEEEEEcC-CCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLGVG-LTMDTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~~~-~~~~~~~i~I~G~-~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.++.|...|.-. .+...++|.|+|. +|+||||++..++..+.+....+..+.
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4455565555421 1245678888876 899999999999999877655566665
No 441
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.80 E-value=0.089 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
++++|+|++|+|||+++..++..+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999998887655
No 442
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.037 Score=45.99 Aligned_cols=25 Identities=44% Similarity=0.747 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.75 E-value=0.038 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..++..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 444
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.74 E-value=0.039 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..++..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999864
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.74 E-value=0.038 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...-|+|.|++|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999999865
No 446
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.72 E-value=0.039 Score=45.61 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..++..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999864
No 447
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.036 Score=46.52 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999865
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.71 E-value=0.043 Score=59.60 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+....++|+|++|+|||||+..+.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34567999999999999999998763
No 449
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.71 E-value=0.037 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+...|+|.|.+|+|||||+..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999999854
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.70 E-value=0.047 Score=53.30 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHH-HHhhccCcceEEEe
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFF-SKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~-~~~~~~f~~~~~~~ 107 (398)
....+++|.|++|+|||||++.++ .-+.......+++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 455789999999999999999963 33332223466665
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.69 E-value=0.049 Score=50.03 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
.+...++|.|+.|+|||||++.++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45578999999999999999999988543
No 452
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.68 E-value=0.035 Score=45.09 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...--|+|.|++|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34456889999999999999998753
No 453
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.66 E-value=0.04 Score=46.09 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...-.|+|.|++|+|||||+..+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34557889999999999999999865
No 454
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.64 E-value=0.03 Score=46.69 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFF 93 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~ 93 (398)
..-.|+|.|.+|+|||||+..++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44578899999999999999985
No 455
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.63 E-value=0.041 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999999864
No 456
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.63 E-value=0.05 Score=46.52 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
..+|+|.|+.|+||||+++.+++.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998863
No 457
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.038 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..++..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999865
No 458
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.62 E-value=0.038 Score=46.51 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..++..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999999875
No 459
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.62 E-value=0.1 Score=60.62 Aligned_cols=151 Identities=11% Similarity=-0.010 Sum_probs=0.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL 150 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 150 (398)
..+.+.++||+|+|||+++..+...+.+ ...+.++ .+...+...+...+-..+......
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~--~~~~~in----fS~~Tta~~l~~~~e~~~e~~~~~--------------- 1361 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPD--FEVVSLN----FSSATTPELLLKTFDHHCEYKRTP--------------- 1361 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTT--EEEEEEC----CCTTCCHHHHHHHHHHHEEEEECT---------------
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCC--CceEEEE----eeCCCCHHHHHHHHhhcceEEecc---------------
Q ss_pred C----------CceEEEEEeCCCChH--------hHHHHHccCCCC------------CCCcEEEEE-------eCChhH
Q 015918 151 T----------RKKVLIVFDDVNHPR--------QIEFLIGNLDWF------------ASGSRILIT-------ARDKQA 193 (398)
Q Consensus 151 ~----------~~~~LlvlDd~~~~~--------~~~~l~~~l~~~------------~~~~~iliT-------sR~~~~ 193 (398)
+ +++.++++||++-+. .++.+...+... ..+..+|.| .|.+-.
T Consensus 1362 ~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~ 1441 (3245)
T 3vkg_A 1362 SGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLT 1441 (3245)
T ss_dssp TSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCC
T ss_pred CCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCC
Q ss_pred HHhcCCCeeEEcCCCChhhhHHHHHHhhcCCCCCCcchHHHHHHHHHHc
Q 015918 194 LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYA 242 (398)
Q Consensus 194 ~~~~~~~~~~~l~~L~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~i~~~~ 242 (398)
....+....+.++..+.++...+|...........+........+++.+
T Consensus 1442 ~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~at 1490 (3245)
T 3vkg_A 1442 HRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAM 1490 (3245)
T ss_dssp HHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHH
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.61 E-value=0.042 Score=45.53 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..++..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 461
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.60 E-value=0.029 Score=51.20 Aligned_cols=85 Identities=12% Similarity=0.037 Sum_probs=49.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEeechhhhhcCCHHHHHHHHHHHHhcCCCCCCCCccchHHHHHhhCC
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR 152 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 152 (398)
..++|.|+.|+|||||++.++..+... ...+.+.......... .. ..... ...........+...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~-~~-------~~i~~---~~ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKH-HK-------NYTQL---FFGGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSS-CS-------SEEEE---ECBTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeecccccc-ch-------hEEEE---EeCCChhHHHHHHHHhhh
Confidence 489999999999999999998765432 3445544221110000 00 00000 000122255666677778
Q ss_pred ceEEEEEeCCCChHhHH
Q 015918 153 KKVLIVFDDVNHPRQIE 169 (398)
Q Consensus 153 ~~~LlvlDd~~~~~~~~ 169 (398)
.|-+|++|+....+.++
T Consensus 240 ~p~ilildE~~~~e~~~ 256 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYD 256 (330)
T ss_dssp CCSEEEECCCCSTHHHH
T ss_pred CCCEEEEcCCChHHHHH
Confidence 88899999997654444
No 462
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.59 E-value=0.045 Score=46.12 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....|+|.|.+|+|||||+..++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999865
No 463
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.58 E-value=0.042 Score=45.36 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
.--|+|.|.+|+|||||++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468899999999999997665543
No 464
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.55 E-value=0.043 Score=46.73 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-|+|.|.+|+|||+|+..++..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3778999999999999998854
No 465
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.54 E-value=0.072 Score=46.96 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|.+|+|||||...++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999854
No 466
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.54 E-value=0.033 Score=53.25 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCccHHHHHH-HHHHHh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAG-AFFSKI 96 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~-~~~~~~ 96 (398)
.+.+.++|.|++|+|||+|+. .+++..
T Consensus 161 grGQR~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 161 GRGQRELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp BTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred ccCCEEEEecCCCCCccHHHHHHHHHhh
Confidence 455678899999999999965 555543
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.53 E-value=0.044 Score=45.67 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..++..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4457889999999999999999864
No 468
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.52 E-value=0.044 Score=45.30 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..++..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999999865
No 469
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.041 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
.--|+|.|.+|+|||||+..++.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34588999999999999998873
No 470
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.49 E-value=0.074 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.+.-.|+|.|.+|+|||||+..+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.48 E-value=0.041 Score=45.92 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...-|+|.|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4556889999999999999999875
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.045 Score=45.16 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
-.|+|.|++|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.46 E-value=0.043 Score=45.81 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 474
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.45 E-value=0.081 Score=44.65 Aligned_cols=27 Identities=15% Similarity=-0.189 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
...+.+|+|+-|+||||.+...+++..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999995544455433
No 475
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.44 E-value=0.04 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
...|+|.|++|+|||||+..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999864
No 476
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.42 E-value=0.041 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+...++|.|++|+|||||+..++..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999864
No 477
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.42 E-value=0.073 Score=47.59 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred hHHHHHHHhccCCCCCceEEEEEc---CCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 56 RIEEILSLLGVGLTMDTCKLGIWG---IGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 56 el~~l~~~L~~~~~~~~~~i~I~G---~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.++.+.+.. +.++++|.+ -||+||||++..++..+......+..+.
T Consensus 22 ~~~~~~r~~~~----~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN----KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH----HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC----CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34444444442 234566664 9999999999999998876544455554
No 478
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.41 E-value=0.05 Score=45.08 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|.+|+|||||+..++..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45677999999999999999998754
No 479
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.38 E-value=0.044 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456889999999999999999864
No 480
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.38 E-value=0.086 Score=48.93 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCceEEEEEc-CCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 70 MDTCKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 70 ~~~~~i~I~G-~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
.+.++|+|+| -||+||||++..++..+......+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4567787765 8999999999999998877655566655
No 481
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.36 E-value=0.04 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHHh
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSKI 96 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 96 (398)
...+++|.|+.|+|||||++.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44689999999999999999998764
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.34 E-value=0.056 Score=51.32 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHHhh
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSKIS 97 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 97 (398)
.+...++|.|++|+|||||++.++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4557899999999999999999988754
No 483
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=93.33 E-value=0.24 Score=43.29 Aligned_cols=49 Identities=12% Similarity=-0.169 Sum_probs=37.7
Q ss_pred HHHHHHhccCCCCCceEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 58 EEILSLLGVGLTMDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 58 ~~l~~~L~~~~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
..|-+.|.+.- .+.++++|.|.+|.|||+|+.+++..-..+-+.++++.
T Consensus 8 ~~LD~~l~GGl-~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~ 56 (260)
T 3bs4_A 8 EELDREIGKIK-KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS 56 (260)
T ss_dssp HHHHHHHCCBC-TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCC-CCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45556676655 67788999999999999999999987556666667765
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.33 E-value=0.045 Score=45.81 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|++|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999865
No 485
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.28 E-value=0.51 Score=46.02 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=28.1
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHHhhccC---cceEEEeec
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNV 109 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~f---~~~~~~~~~ 109 (398)
.+.++|.|.+|+|||++++.++..+...+ ...+|+.+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDp 254 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDP 254 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCC
Confidence 35689999999999999999888765443 244555543
No 486
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.27 E-value=0.087 Score=44.76 Aligned_cols=34 Identities=18% Similarity=-0.031 Sum_probs=25.7
Q ss_pred eEEEEEc-CCCccHHHHHHHHHHHhhccCcceEEE
Q 015918 73 CKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFA 106 (398)
Q Consensus 73 ~~i~I~G-~~G~GKTtLa~~~~~~~~~~f~~~~~~ 106 (398)
+++.|+| -+|+||||++..++..+.++...+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 4666766 489999999999999987665445544
No 487
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.27 E-value=0.036 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHH
Q 015918 74 KLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 74 ~i~I~G~~G~GKTtLa~~~~~ 94 (398)
-|+|.|++|+|||||+..++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999763
No 488
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.25 E-value=0.057 Score=46.60 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCccHHHHHHHHHHH
Q 015918 70 MDTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 70 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.....|+|.|++|+|||||+..++..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999998864
No 489
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.25 E-value=0.052 Score=46.38 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
....|+|.|.+|+|||||+..++..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998754
No 490
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.24 E-value=0.049 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998854
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.22 E-value=0.051 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
...|+|.|++|+|||||...++..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999754
No 492
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.21 E-value=0.15 Score=45.72 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=36.1
Q ss_pred hhHHHHHHHhcc-CCCCCceEEEEEcC-CCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 55 SRIEEILSLLGV-GLTMDTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 55 ~el~~l~~~L~~-~~~~~~~~i~I~G~-~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+.++.|...|.- ..+...++|.|+|. +|+||||++..++..+......+..+.
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 344555444431 11145678888886 799999999999999877655566654
No 493
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.19 E-value=0.046 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..--|+|.|.+|+|||||+..+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999998743
No 494
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.098 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhc
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISR 98 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~ 98 (398)
+.++|+||+|+|||+++..+...+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999998888776543
No 495
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.16 E-value=0.052 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
+.-.|+|.|++|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998854
No 496
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.15 E-value=0.067 Score=49.53 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=29.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHhhccCcceEEEe
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH 107 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~~~~~f~~~~~~~ 107 (398)
+++++.|.+|+||||++..++..+......+..+.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd 37 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG 37 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence 67889999999999999999998777665666665
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.13 E-value=0.05 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
..-|+|.|.+|+|||||+..++..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.13 E-value=0.03 Score=45.84 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=10.2
Q ss_pred ceEEEEEcCCCccHHHHHHHHHHH
Q 015918 72 TCKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 72 ~~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
.--|+|.|++|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998754
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.051 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHHH
Q 015918 73 CKLGIWGIGGVGKTAIAGAFFSK 95 (398)
Q Consensus 73 ~~i~I~G~~G~GKTtLa~~~~~~ 95 (398)
--|+|.|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999865
No 500
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.11 E-value=0.041 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCccHHHHHHHHHH
Q 015918 71 DTCKLGIWGIGGVGKTAIAGAFFS 94 (398)
Q Consensus 71 ~~~~i~I~G~~G~GKTtLa~~~~~ 94 (398)
....|+|.|++|+|||||+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446788999999999999988763
Done!